Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chrUn_random
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10571689
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.28
Warning! 1662808 characters in sequence are not A, C, G, or T
File 30 of 30
Found at i:10440067 original size:28 final size:29
Alignment explanation
Indices: 10440026--10440090 Score: 69
Period size: 30 Copynumber: 2.2 Consensus size: 29
10440016 GTCTATGGGC
* *
10440026 AATTTTTCAGTTTT-TGGGGTAAAAATGT
1 AATTTTTCACTTTTAGGGGGTAAAAATGT
* *
10440054 AATTTTTGACTTTTACGGGGGTAAAAGTGT
1 AATTTTTCACTTTTA-GGGGGTAAAAATGT
*
10440084 AAATTTT
1 AATTTTT
10440091 AAAAATTACT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
28 12 0.40
30 18 0.60
ACGTcount: A:0.29, C:0.05, G:0.22, T:0.45
Consensus pattern (29 bp):
AATTTTTCACTTTTAGGGGGTAAAAATGT
Found at i:10441697 original size:171 final size:171
Alignment explanation
Indices: 10441309--10443414 Score: 1904
Period size: 171 Copynumber: 12.4 Consensus size: 171
10441299 NNNNNNNNNN
* **
10441309 TGAGACTATAAAACCATTTAAAGCGAGTAATAATGCTTTTGAAGGCATG-GCTGAAAATAAATA-
1 TGAGACTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGAG-TGACTATAAA-AG
* ** * * * * * *
10441372 GACTTTTCCTACCAATAGAGGGTTTTTGCTACACGTTTCTCGAGGTAAACATTCAATTATAATCT
64 GACTTTTCTTGTCAATGGATGGCTTTTGCTTCAAGTTTCTCGAGGCAAACATTCAATTATAATCT
* * * * *
10441437 -ATTTGACCAAAAATTTAAGAAAAGTTCA-CTTAAAATCAATAA
129 GTTTTAACAAAAAATGTAA-AAAAATTCATCTTAAAATCAATAA
* * **
10441479 TGAGACTATAAAACCATTTAAATCGAGTAATAAGGCTTTCGAAGGCATGAACGACTATAAAAGGA
1 TGAGACTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGAGTGACTATAAAAGGA
** *
10441544 CTTTTCTTGTCAATGGATCACTTTTGCTTCAAGTTTCTCGAGGCAAACATTCGATTATAATCTGT
66 CTTTTCTTGTCAATGGATGGCTTTTGCTTCAAGTTTCTCGAGGCAAACATTCAATTATAATCTGT
*
10441609 TTTAACAAAAAATGTAAAAAAATTCATCTTAAAATCAGTAA
131 TTTAACAAAAAATGTAAAAAAATTCATCTTAAAATCAATAA
* ** * * * *
10441650 TCAGTTTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGCATGAGTAACTATAAATGAA
1 TGAGACTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGAGTGACTATAAAAGGA
* ** * * * *
10441715 CTTTCCTTCCCATTGGAAGGCTTTCGCTTCACA-TTTC-CTGAGGCAAACTTTCAATTATAATCT
66 CTTTTCTTGTCAATGGATGGCTTTTGCTTCA-AGTTTCTC-GAGGCAAACATTCAATTATAATCT
* * *
10441778 GTTTTAACCAAAAATGTAAAAAAAATTAAAT-TTAAAATGAATAA
129 GTTTTAACAAAAAATGT-AAAAAAATT-CATCTTAAAATCAATAA
* ** * *
10441822 TGAG-CTATAAAACAATTTAGGGTC-AGTAATAAGTCTTCTGAAGGCATGAGTGACTATAAACA-
1 TGAGACTATAAAACCATTTAAAG-CGAGTAATAAGGCTTTTGAAGGCATGAGTGACTATAAA-AG
* * * * * *
10441884 GACTTTTCTTTTCAATGGATGGCTTTCGCTTCATGTTTCTCAAGGCAAAC-TTATAATTATAA-A
64 GACTTTTCTTGTCAATGGATGGCTTTTGCTTCAAGTTTCTCGAGGCAAACATT-CAATTATAATC
* ** * * *
10441947 AGTCATAACCAAAAAA-CTAAAAAAATTCAACTTAAAATCAATTA
128 TGTTTTAA-CAAAAAATGTAAAAAAATTCATCTTAAAATCAATAA
* * * * * * *
10441991 TGAGA-T-TATAACCATTTTAAGCGAGTAATAAGGCTTCTAAAGGAATGAGTGACTATAAATGGT
1 TGAGACTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGAGTGACTATAAAAGGA
* * * * ** * *
10442054 CTTTTCCTGTCAACT-GAAGG-TTTTAGCCTCACGTTTC-CTGAGATAAACATTCAATAATATTC
66 CTTTTCTTGTCAA-TGGATGGCTTTT-GCTTCAAGTTTCTC-GAGGCAAACATTCAATTATAATC
*
10442116 TGTTTTAGTA-AAAAAATGTAAAACAATTCATCTTAAAATCAATAA
128 TGTTTTA--ACAAAAAATGTAAAAAAATTCATCTTAAAATCAATAA
**
10442161 TGAGACTATAAAACCATTTAAAGCTG-GTAATAAGGCTTTTGAAGGCATGAGTGAAAATAAATA-
1 TGAGACTATAAAACCATTTAAAGC-GAGTAATAAGGCTTTTGAAGGCATGAGTGACTATAAA-AG
*** * * * *
10442224 GACTTTTCTCACCAACT-GA-GGGTTTTAGCTACACGTTTCCCGA-GCTAAACATTCAATTATAA
64 GACTTTTCTTGTCAA-TGGATGGCTTTT-GCTTCAAGTTTCTCGAGGC-AAACATTCAATTATAA
* * * * * *
10442286 TCTG-TTTGACCAAAAATTTAAGAAAATTCAACTTAATATCAATAA
126 TCTGTTTTAACAAAAAATGTAAAAAAATTCATCTTAAAATCAATAA
** **
10442331 TGAGACTATAAAACCATTTAAAGCGAGTAATAAGGCTTACGAAGGCATGACCGACTATAAAAGGA
1 TGAGACTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGAGTGACTATAAAAGGA
** * *
10442396 CTTTTCTTGTCAATGGATCACTTTTGCTTCAAGTTTCACGAGGCAAACATTCGATTATAATCTGT
66 CTTTTCTTGTCAATGGATGGCTTTTGCTTCAAGTTTCTCGAGGCAAACATTCAATTATAATCTGT
* * * *
10442461 TTTAACAAAAAATGTAAAAACATTCAGCTTAAACTCAGTAA
131 TTTAACAAAAAATGTAAAAAAATTCATCTTAAAATCAATAA
* * * * *
10442502 TCAGATTATAAAACCATTTGAAA-CGAGTAATAAGGCTTTTAAAGGCATGAGTAACTAT-AAATG
1 TGAGACTATAAAACCATTT-AAAGCGAGTAATAAGGCTTTTGAAGGCATGAGTGACTATAAAAGG
* ** * * **
10442565 AATTTTCCTTCCCATTGGAAGGCTTTTGCTTCACA-TTTC-CTGAGGCAAACCCTCAATTATAAT
65 ACTTTT-CTTGTCAATGGATGGCTTTTGCTTCA-AGTTTCTC-GAGGCAAACATTCAATTATAAT
* * *
10442628 CTGTTTTAATCAAAAATAT-AAAAAAAATTAAAT-TTAAAATGAATAA
127 CTGTTTTAA-CAAAAA-ATGTAAAAAAATT-CATCTTAAAATCAATAA
* * * *
10442674 TGAG-CTATAAAACAATTTAGAGCGAGTAATAAGACTTCTGAAGGCATGAGTGACTATAAACA-G
1 TGAGACTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGAGTGACTATAAA-AGG
* ** * * * **
10442737 ACTTCTCCTT-TCAATGGATGGCTTTCACTTCACGTTTCTCGAGGTAAAC-TTATAATTATAAAA
65 ACTT-TTCTTGTCAATGGATGGCTTTTGCTTCAAGTTTCTCGAGGCAAACATT-CAATTATAATC
** ** * * **
10442800 T-TCATAACAAAAAAACTAAAAAAATTCAACTGAAAATCAATTT
128 TGTTTTAACAAAAAATGTAAAAAAATTCATCTTAAAATCAATAA
* * * * * * *
10442843 TGAGA-T-TATAACCATTTTAAGCGAGTAATAAGGCTTCTAAAGGAATGAGTGACTATAAATGGT
1 TGAGACTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGAGTGACTATAAAAGGA
* * * * ** *
10442906 CTTTTCTTGTCAACT-GA-GGCTTTTAACCTCACGTTTCCCGAGATAAACATTCAATAATAATCT
66 CTTTTCTTGTCAA-TGGATGGCTTTT-GCTTCAAGTTTCTCGAGGCAAACATTCAATTATAATCT
* *
10442969 GTTTTAGCAAAAAAGTGTAAAACAATTCATCTTAAAATCAATAA
129 GTTTTAACAAAAAA-TGTAAAAAAATTCATCTTAAAATCAATAA
* ** **
10443013 TGAGACTATAAAACCATTTAAAGCGAGCAATAATACTTTTGAAGGCATGAGTGAAAATAAATA-G
1 TGAGACTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGAGTGACTATAAA-AGG
* ** * * ** * * *
10443077 ACTTTTCCTACCAATAGA-GGGTTTTAGCAACATGTTTCTCGAGGTAAACATTTAATTATAATCT
65 ACTTTTCTTGTCAATGGATGGCTTTT-GCTTCAAGTTTCTCGAGGCAAACATTCAATTATAATCT
* * * * *
10443141 G-TTTGACCAAAAATTTAAGAAAATTCAACTTAAAATCAATAA
129 GTTTTAACAAAAAATGTAAAAAAATTCATCTTAAAATCAATAA
* * * *
10443183 TGAGACTATAAAACTATTTAAATCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAAAGGA
1 TGAGACTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGAGTGACTATAAAAGGA
* ** *
10443248 CATTTCTTGTCAATGGATCCCTTTTGCTTCAAGTTTCTCGAGGCAAACATTCGATTATAATCTGT
66 CTTTTCTTGTCAATGGATGGCTTTTGCTTCAAGTTTCTCGAGGCAAACATTCAATTATAATCTGT
* *
10443313 TTTAACAAAAAATGTAAAAAAATTCAGCTTAAAATCAGTAA
131 TTTAACAAAAAATGTAAAAAAATTCATCTTAAAATCAATAA
* * * *
10443354 TCAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGCATGAGTAACTATAAA
1 TGAGACTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGAGTGACTATAAA
10443415 TGAACTTTCC
Statistics
Matches: 1552, Mismatches: 313, Indels: 141
0.77 0.16 0.07
Matches are distributed among these distances:
167 15 0.01
168 168 0.11
169 86 0.06
170 448 0.29
171 572 0.37
172 254 0.16
173 9 0.01
ACGTcount: A:0.39, C:0.15, G:0.14, T:0.31
Consensus pattern (171 bp):
TGAGACTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGAGTGACTATAAAAGGA
CTTTTCTTGTCAATGGATGGCTTTTGCTTCAAGTTTCTCGAGGCAAACATTCAATTATAATCTGT
TTTAACAAAAAATGTAAAAAAATTCATCTTAAAATCAATAA
Found at i:10442716 original size:852 final size:852
Alignment explanation
Indices: 10441309--10443456 Score: 3718
Period size: 852 Copynumber: 2.5 Consensus size: 852
10441299 NNNNNNNNNN
10441309 TGAGACTATAAAACCATTTAAAGCGAGTAATAATGCTTTTGAAGGCATG-GCTGAAAATAAATAG
1 TGAGACTATAAAACCATTTAAAGCGAGTAATAATGCTTTTGAAGGCATGAG-TGAAAATAAATAG
* *
10441373 ACTTTTCCTACCAATAGAGGGTTTTTGCTACACGTTTCTCGAGGTAAACATTCAATTATAATCTA
65 ACTTTTCCTACCAATAGAGGGTTTTAGCTACACGTTTCTCGAGGTAAACATTCAATTATAATCTG
10441438 TTTGACCAAAAATTTAAGAAAAGTTC-ACTTAAAATCAATAATGAGACTATAAAACCATTTAAAT
130 TTTGACCAAAAATTTAAGAAAA-TTCAACTTAAAATCAATAATGAGACTATAAAACCATTTAAAT
10441502 CGAGTAATAAGGCTTTCGAAGGCATGAACGACTATAAAAGGACTTTTCTTGTCAATGGATCACTT
194 CGAGTAATAAGGCTTTCGAAGGCATGAACGACTATAAAAGGACTTTTCTTGTCAATGGATCACTT
10441567 TTGCTTCAAGTTTCTCGAGGCAAACATTCGATTATAATCTGTTTTAACAAAAAATGTAAAAAAAT
259 TTGCTTCAAGTTTCTCGAGGCAAACATTCGATTATAATCTGTTTTAACAAAAAATGTAAAAAAAT
* *
10441632 TCATCTTAAAATCAGTAATCAGTTTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGCA
324 TCAGCTTAAAATCAGTAATCAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGCA
10441697 TGAGTAACTATAAATGAACTTTCCTTCCCATTGGAAGGCTTTCGCTTCACATTTCCTGAGGCAAA
389 TGAGTAACTATAAATGAACTTTCCTTCCCATTGGAAGGCTTTCGCTTCACATTTCCTGAGGCAAA
** *
10441762 CTTTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAAATTAAATTTAAAATGAATAATGAGC
454 CCCTCAATTATAATCTGTTTTAACCAAAAATATAAAAAAAATTAAATTTAAAATGAATAATGAGC
* * *
10441827 TATAAAACAATTTAGGGTCAGTAATAAGTCTTCTGAAGGCATGAGTGACTATAAACAGACTTTTC
519 TATAAAACAATTTAGAGTCAGTAATAAGACTTCTGAAGGCATGAGTGACTATAAACAGACTTCTC
* * * *
10441892 TTTTCAATGGATGGCTTTCGCTTCATGTTTCTCAAGGCAAACTTATAATTATAAAAGTCATAACC
584 CTTTCAATGGATGGCTTTCACTTCACGTTTCTCAAGGCAAACTTATAATTATAAAAGTCATAACA
*
10441957 AAAAAACTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAACCATTTTAAGCGAGTAATAA
649 AAAAAACTAAAAAAATTCAACTGAAAATCAATTATGAGATTATAACCATTTTAAGCGAGTAATAA
*
10442022 GGCTTCTAAAGGAATGAGTGACTATAAATGGTCTTTTCCTGTCAACTGAAGG-TTTTAGCCTCAC
714 GGCTTCTAAAGGAATGAGTGACTATAAATGGTCTTTTCCTGTCAACTG-AGGCTTTTAACCTCAC
* * *
10442086 GTTTCCTGAGATAAACATTCAATAATATTCTGTTTTAGTAAAAAAATGTAAAACAATTCATCTTA
778 GTTTCCCGAGATAAACATTCAATAATAATCTGTTTTAGCAAAAAAATGTAAAACAATTCATCTTA
10442151 AAATCAATAA
843 AAATCAATAA
*
10442161 TGAGACTATAAAACCATTTAAAGCTG-GTAATAAGGCTTTTGAAGGCATGAGTGAAAATAAATAG
1 TGAGACTATAAAACCATTTAAAGC-GAGTAATAATGCTTTTGAAGGCATGAGTGAAAATAAATAG
* *
10442225 ACTTTT-CTCACCAACT-GAGGGTTTTAGCTACACGTTTCCCGAGCTAAACATTCAATTATAATC
65 ACTTTTCCT-ACCAA-TAGAGGGTTTTAGCTACACGTTTCTCGAGGTAAACATTCAATTATAATC
*
10442288 TGTTTGACCAAAAATTTAAGAAAATTCAACTTAATATCAATAATGAGACTATAAAACCATTTAAA
128 TGTTTGACCAAAAATTTAAGAAAATTCAACTTAAAATCAATAATGAGACTATAAAACCATTTAAA
* * *
10442353 GCGAGTAATAAGGCTTACGAAGGCATGACCGACTATAAAAGGACTTTTCTTGTCAATGGATCACT
193 TCGAGTAATAAGGCTTTCGAAGGCATGAACGACTATAAAAGGACTTTTCTTGTCAATGGATCACT
* *
10442418 TTTGCTTCAAGTTTCACGAGGCAAACATTCGATTATAATCTGTTTTAACAAAAAATGTAAAAACA
258 TTTGCTTCAAGTTTCTCGAGGCAAACATTCGATTATAATCTGTTTTAACAAAAAATGTAAAAAAA
*
10442483 TTCAGCTTAAACTCAGTAATCAGATTATAAAACCATTTGAAA-CGAGTAATAAGGCTTTTAAAGG
323 TTCAGCTTAAAATCAGTAATCAGATTATAAAACCATTT-AAAGCGAGTAATAAGGCTTTTAAAGG
* *
10442547 CATGAGTAACTATAAATGAATTTTCCTTCCCATTGGAAGGCTTTTGCTTCACATTTCCTGAGGCA
387 CATGAGTAACTATAAATGAACTTTCCTTCCCATTGGAAGGCTTTCGCTTCACATTTCCTGAGGCA
*
10442612 AACCCTCAATTATAATCTGTTTTAATCAAAAATATAAAAAAAATTAAATTTAAAATGAATAATGA
452 AACCCTCAATTATAATCTGTTTTAACCAAAAATATAAAAAAAATTAAATTTAAAATGAATAATGA
10442677 GCTATAAAACAATTTAGAG-CGAGTAATAAGACTTCTGAAGGCATGAGTGACTATAAACAGACTT
517 GCTATAAAACAATTTAGAGTC-AGTAATAAGACTTCTGAAGGCATGAGTGACTATAAACAGACTT
* * *
10442741 CTCCTTTCAATGGATGGCTTTCACTTCACGTTTCTCGAGGTAAACTTATAATTATAAAATTCATA
581 CTCCTTTCAATGGATGGCTTTCACTTCACGTTTCTCAAGGCAAACTTATAATTATAAAAGTCATA
*
10442806 ACAAAAAAACTAAAAAAATTCAACTGAAAATCAATTTTGAGATTATAACCATTTTAAGCGAGTAA
646 ACAAAAAAACTAAAAAAATTCAACTGAAAATCAATTATGAGATTATAACCATTTTAAGCGAGTAA
*
10442871 TAAGGCTTCTAAAGGAATGAGTGACTATAAATGGTCTTTTCTTGTCAACTGAGGCTTTTAACCTC
711 TAAGGCTTCTAAAGGAATGAGTGACTATAAATGGTCTTTTCCTGTCAACTGAGGCTTTTAACCTC
*
10442936 ACGTTTCCCGAGATAAACATTCAATAATAATCTGTTTTAGCAAAAAAGTGTAAAACAATTCATCT
776 ACGTTTCCCGAGATAAACATTCAATAATAATCTGTTTTAGCAAAAAAATGTAAAACAATTCATCT
10443001 TAAAATCAATAA
841 TAAAATCAATAA
* *
10443013 TGAGACTATAAAACCATTTAAAGCGAGCAATAATACTTTTGAAGGCATGAGTGAAAATAAATAGA
1 TGAGACTATAAAACCATTTAAAGCGAGTAATAATGCTTTTGAAGGCATGAGTGAAAATAAATAGA
* * *
10443078 CTTTTCCTACCAATAGAGGGTTTTAGCAACATGTTTCTCGAGGTAAACATTTAATTATAATCTGT
66 CTTTTCCTACCAATAGAGGGTTTTAGCTACACGTTTCTCGAGGTAAACATTCAATTATAATCTGT
*
10443143 TTGACCAAAAATTTAAGAAAATTCAACTTAAAATCAATAATGAGACTATAAAACTATTTAAATCG
131 TTGACCAAAAATTTAAGAAAATTCAACTTAAAATCAATAATGAGACTATAAAACCATTTAAATCG
*** * *
10443208 AGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAAAGGACATTTCTTGTCAATGGATCCCTTTT
196 AGTAATAAGGCTTTCGAAGGCATGAACGACTATAAAAGGACTTTTCTTGTCAATGGATCACTTTT
10443273 GCTTCAAGTTTCTCGAGGCAAACATTCGATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTC
261 GCTTCAAGTTTCTCGAGGCAAACATTCGATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTC
10443338 AGCTTAAAATCAGTAATCAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGCATG
326 AGCTTAAAATCAGTAATCAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGCATG
*
10443403 AGTAACTATAAATGAACTTTCCTTCACATTGGAAGGCTTTCGCTTCACATTTCC
391 AGTAACTATAAATGAACTTTCCTTCCCATTGGAAGGCTTTCGCTTCACATTTCC
10443457 NNNNNNNNNN
Statistics
Matches: 1223, Mismatches: 61, Indels: 24
0.94 0.05 0.02
Matches are distributed among these distances:
851 14 0.01
852 1201 0.98
853 8 0.01
ACGTcount: A:0.39, C:0.15, G:0.14, T:0.31
Consensus pattern (852 bp):
TGAGACTATAAAACCATTTAAAGCGAGTAATAATGCTTTTGAAGGCATGAGTGAAAATAAATAGA
CTTTTCCTACCAATAGAGGGTTTTAGCTACACGTTTCTCGAGGTAAACATTCAATTATAATCTGT
TTGACCAAAAATTTAAGAAAATTCAACTTAAAATCAATAATGAGACTATAAAACCATTTAAATCG
AGTAATAAGGCTTTCGAAGGCATGAACGACTATAAAAGGACTTTTCTTGTCAATGGATCACTTTT
GCTTCAAGTTTCTCGAGGCAAACATTCGATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTC
AGCTTAAAATCAGTAATCAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGCATG
AGTAACTATAAATGAACTTTCCTTCCCATTGGAAGGCTTTCGCTTCACATTTCCTGAGGCAAACC
CTCAATTATAATCTGTTTTAACCAAAAATATAAAAAAAATTAAATTTAAAATGAATAATGAGCTA
TAAAACAATTTAGAGTCAGTAATAAGACTTCTGAAGGCATGAGTGACTATAAACAGACTTCTCCT
TTCAATGGATGGCTTTCACTTCACGTTTCTCAAGGCAAACTTATAATTATAAAAGTCATAACAAA
AAAACTAAAAAAATTCAACTGAAAATCAATTATGAGATTATAACCATTTTAAGCGAGTAATAAGG
CTTCTAAAGGAATGAGTGACTATAAATGGTCTTTTCCTGTCAACTGAGGCTTTTAACCTCACGTT
TCCCGAGATAAACATTCAATAATAATCTGTTTTAGCAAAAAAATGTAAAACAATTCATCTTAAAA
TCAATAA
Found at i:10444844 original size:19 final size:19
Alignment explanation
Indices: 10444817--10444862 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
10444807 AGGAGACAAG
*
10444817 ATAAAATTTT-TAGAATAAA
1 ATAATATTTTATA-AATAAA
10444836 ATAATATTTTATAAATAAA
1 ATAATATTTTATAAATAAA
10444855 ATAATATT
1 ATAATATT
10444863 AAAATATTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 23 0.92
20 2 0.08
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (19 bp):
ATAATATTTTATAAATAAA
Found at i:10445670 original size:23 final size:24
Alignment explanation
Indices: 10445629--10445674 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
10445619 TGGCTAGAAA
*
10445629 AAAAAATGAATTAATATAATATTC
1 AAAAAATGAATTAAAATAATATTC
*
10445653 AAAATATGAA-TAAAATAATATT
1 AAAAAATGAATTAAAATAATATT
10445675 ATTTCATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (24 bp):
AAAAAATGAATTAAAATAATATTC
Found at i:10455641 original size:3 final size:3
Alignment explanation
Indices: 10455633--10455696 Score: 60
Period size: 3 Copynumber: 21.3 Consensus size: 3
10455623 TCTCTTGCAT
* *
10455633 TTA TTA TTA TTA TTA TTA TTA -TA TTTA TTA TTA TCA TTA TT- TCA
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA
* *
10455677 TTA TTTA TTT TTA TTT TTA T
1 TTA -TTA TTA TTA TTA TTA T
10455697 ATTTTCATTT
Statistics
Matches: 49, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
2 3 0.06
3 41 0.84
4 5 0.10
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:10455663 original size:24 final size:24
Alignment explanation
Indices: 10455631--10455696 Score: 80
Period size: 24 Copynumber: 2.8 Consensus size: 24
10455621 GTTCTCTTGC
*
10455631 ATTTATTATTATTATTATTATTA-T
1 ATTTATTATTATTATTATT-TCATT
*
10455655 ATTTATTATTATCATTATTTCATT
1 ATTTATTATTATTATTATTTCATT
* *
10455679 ATTTATTTTTATTTTTAT
1 ATTTATTATTATTATTAT
10455697 ATTTTCATTT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
23 2 0.06
24 34 0.94
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (24 bp):
ATTTATTATTATTATTATTTCATT
Found at i:10456248 original size:32 final size:32
Alignment explanation
Indices: 10456203--10456321 Score: 125
Period size: 32 Copynumber: 3.6 Consensus size: 32
10456193 TTTTACACTA
* *
10456203 GTTTTT-CACAGGCTAAACTAAAACCTAAAGTG
1 GTTTTTCCA-AGGCTCAACCAAAACCTAAAGTG
* *
10456235 GTTTTTCCAAGGCTCAACCACAACCTACAACAATG
1 GTTTTTCCAAGGCTCAACCAAAACCT--AA-AGTG
*
10456270 GTTTTTCACAA-GCTCAACCAAAACCCAAAGTG
1 GTTTTTC-CAAGGCTCAACCAAAACCTAAAGTG
*
10456302 GTTTTTCAAAGGCTCAACCA
1 GTTTTTCCAAGGCTCAACCA
10456322 CAATCTACAA
Statistics
Matches: 73, Mismatches: 8, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
31 2 0.03
32 39 0.53
33 4 0.05
34 2 0.03
35 23 0.32
36 3 0.04
ACGTcount: A:0.35, C:0.26, G:0.13, T:0.25
Consensus pattern (32 bp):
GTTTTTCCAAGGCTCAACCAAAACCTAAAGTG
Found at i:10456285 original size:35 final size:36
Alignment explanation
Indices: 10456233--10456345 Score: 157
Period size: 35 Copynumber: 3.3 Consensus size: 36
10456223 AAACCTAAAG
10456233 TGGTTTTTC-CAAGGCTCAACCACAACCTACAACAA
1 TGGTTTTTCACAAGGCTCAACCACAACCTACAACAA
* *
10456268 TGGTTTTTCACAA-GCTCAACCAAAACC--CAA-AG
1 TGGTTTTTCACAAGGCTCAACCACAACCTACAACAA
*
10456300 TGGTTTTTCA-AAGGCTCAACCACAATCTACAACAA
1 TGGTTTTTCACAAGGCTCAACCACAACCTACAACAA
10456335 TGGTTTTTCAC
1 TGGTTTTTCAC
10456346 GGGATCAACC
Statistics
Matches: 67, Mismatches: 5, Indels: 11
0.81 0.06 0.13
Matches are distributed among these distances:
31 2 0.03
32 23 0.34
33 3 0.04
34 3 0.04
35 33 0.49
36 3 0.04
ACGTcount: A:0.34, C:0.27, G:0.12, T:0.27
Consensus pattern (36 bp):
TGGTTTTTCACAAGGCTCAACCACAACCTACAACAA
Found at i:10456354 original size:35 final size:35
Alignment explanation
Indices: 10456233--10456367 Score: 147
Period size: 35 Copynumber: 4.0 Consensus size: 35
10456223 AAACCTAAAG
*
10456233 TGGTTTTTC-CAAGGCTCAACCACAACCTACAACAA
1 TGGTTTTTCAC-AGGCTCAACCACAAACTACAACAA
* * *
10456268 TGGTTTTTCACAAGCTCAACCA-AAAC-CCAA-AG
1 TGGTTTTTCACAGGCTCAACCACAAACTACAACAA
* *
10456300 TGGTTTTTCAAAGGCTCAACCACAATCTACAACAA
1 TGGTTTTTCACAGGCTCAACCACAAACTACAACAA
* *
10456335 TGGTTTTTCACGGGATCAACCA-AAACT-CAACAA
1 TGGTTTTTCACAGGCTCAACCACAAACTACAACAA
10456368 CTAACTTTTC
Statistics
Matches: 83, Mismatches: 13, Indels: 10
0.78 0.12 0.09
Matches are distributed among these distances:
32 21 0.25
33 12 0.14
34 10 0.12
35 39 0.47
36 1 0.01
ACGTcount: A:0.36, C:0.27, G:0.13, T:0.24
Consensus pattern (35 bp):
TGGTTTTTCACAGGCTCAACCACAAACTACAACAA
Found at i:10456354 original size:67 final size:67
Alignment explanation
Indices: 10456203--10456360 Score: 244
Period size: 67 Copynumber: 2.4 Consensus size: 67
10456193 TTTTACACTA
* * * *
10456203 GTTTTTCACAGGCTAAACTAAAACCTAAAGTGGTTTTTCCAAGGCTCAACCACAACCTACAACAA
1 GTTTTTCACAGGCTCAACCAAAACCCAAAGTGGTTTTTCAAAGGCTCAACCACAACCTACAACAA
10456268 TG
66 TG
* *
10456270 GTTTTTCACAAGCTCAACCAAAACCCAAAGTGGTTTTTCAAAGGCTCAACCACAATCTACAACAA
1 GTTTTTCACAGGCTCAACCAAAACCCAAAGTGGTTTTTCAAAGGCTCAACCACAACCTACAACAA
10456335 TG
66 TG
* *
10456337 GTTTTTCACGGGATCAACCAAAAC
1 GTTTTTCACAGGCTCAACCAAAAC
10456361 TCAACAACTA
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
67 82 1.00
ACGTcount: A:0.36, C:0.26, G:0.13, T:0.25
Consensus pattern (67 bp):
GTTTTTCACAGGCTCAACCAAAACCCAAAGTGGTTTTTCAAAGGCTCAACCACAACCTACAACAA
TG
Found at i:10460995 original size:144 final size:143
Alignment explanation
Indices: 10460725--10461139 Score: 591
Period size: 144 Copynumber: 2.9 Consensus size: 143
10460715 GGAAGTATTC
* * *
10460725 CTTCGATAGGAAATTTAATAAACTTAT-CTGTTCTTTACCTTTACAACAACAAACTCTCTGGTTC
1 CTTCAATAGGAAATTTGATAAACTTATCCT-TTCTTTACCTTTACAACAACAAACTCTCTAGTTC
* * *
10460789 CATTCCCCAAGAAATTGGGTTATTAAGATCTCTTTCT-AGCCTTGCATTGTCTGACAACAATTTC
65 CATTCCTCAAGAAATTGGGTTGTTAAGATCTCTTTCTGA-TCTT-CATTGTCTGACAACAATTTC
*
10460853 ACAGGTCCAATCCCTG
128 ACAGGTCCAATCCCGG
*
10460869 CTTCAATAGGAAATTTGACAAACTTATCCTTTCTTTACCTTTACAACAACAAACTCTCTAGTTCC
1 CTTCAATAGGAAATTTGATAAACTTATCCTTTCTTTACCTTTACAACAACAAACTCTCTAGTTCC
* * * *
10460934 ATTCCTCAAGAAATTGGATTGTTAAGATCACTTTCTGATCTTCAATTGTCTTACAATAATTTCAC
66 ATTCCTCAAGAAATTGGGTTGTTAAGATCTCTTTCTGATCTTC-ATTGTCTGACAACAATTTCAC
10460999 AGGTCCAATCCCGG
130 AGGTCCAATCCCGG
* * * * * * *
10461013 CTTCAATAGGAAATATGATACACTTATCCGTTCTTTACCTTAATAACAACAAACTCTCTAATTTC
1 CTTCAATAGGAAATTTGATAAACTTATCCTTTCTTTACCTTTACAACAACAAACTCTCTAGTTCC
*
10461078 ATTCCTCAAGAAATTGGGTTGTTAAGATCTCTTTCTGATCTTGGATTGTCTGACAACAATTT
66 ATTCCTCAAGAAATTGGGTTGTTAAGATCTCTTTCTGATCTT-CATTGTCTGACAACAATTT
10461140 ANNNNNNNNN
Statistics
Matches: 242, Mismatches: 25, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
143 1 0.00
144 238 0.98
145 3 0.01
ACGTcount: A:0.30, C:0.23, G:0.12, T:0.36
Consensus pattern (143 bp):
CTTCAATAGGAAATTTGATAAACTTATCCTTTCTTTACCTTTACAACAACAAACTCTCTAGTTCC
ATTCCTCAAGAAATTGGGTTGTTAAGATCTCTTTCTGATCTTCATTGTCTGACAACAATTTCACA
GGTCCAATCCCGG
Found at i:10461673 original size:32 final size:31
Alignment explanation
Indices: 10461632--10461700 Score: 95
Period size: 32 Copynumber: 2.2 Consensus size: 31
10461622 TTTCAAGAAA
10461632 TTTTAAGGATTTTTAAAGT-TTGTTAAAGCAAT
1 TTTTAAGGATTTTTAAAGTATT-TTAAAGC-AT
* *
10461664 TTTTAAGGATTTTTTAAGTATTTTGAAGCAT
1 TTTTAAGGATTTTTAAAGTATTTTAAAGCAT
10461695 TTTTAA
1 TTTTAA
10461701 AGTTTTTTTC
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
31 8 0.24
32 24 0.71
33 2 0.06
ACGTcount: A:0.32, C:0.03, G:0.14, T:0.51
Consensus pattern (31 bp):
TTTTAAGGATTTTTAAAGTATTTTAAAGCAT
Found at i:10461686 original size:21 final size:21
Alignment explanation
Indices: 10461556--10461854 Score: 76
Period size: 21 Copynumber: 14.2 Consensus size: 21
10461546 TTCAAACCAT
*
10461556 TTTTTAAAGATTTTTGAAA-TA
1 TTTTTAAGGATTTTT-AAAGTA
* * * *
10461577 TTTTGAAGCATTTTTAAGGTTT
1 TTTTTAAGGATTTTTAAAG-TA
*
10461599 TTTTTCATA-GATTTTT-AAGGA
1 TTTTT-A-AGGATTTTTAAAGTA
* * * *
10461620 GTTTTCAAGAAATTTT-AAGGA
1 -TTTTTAAGGATTTTTAAAGTA
* *
10461641 TTTTTAAAG-TTTGTTAAAGCAA
1 TTTTTAAGGATTT-TTAAAG-TA
*
10461663 TTTTTAAGGATTTTTTAAGTA
1 TTTTTAAGGATTTTTAAAGTA
* * *
10461684 TTTTGAAGCATTTTTAAAGTT
1 TTTTTAAGGATTTTTAAAGTA
* * * *
10461705 TTTTTCATGGA-TTTCAAGGGA
1 TTTTT-AAGGATTTTTAAAGTA
* * *
10461726 TTGTTAAGGTTTTTTTAAGGT-
1 TTTTTAAGG-ATTTTTAAAGTA
* * * *
10461747 TTTTTAAGCAATTTTAAGGTC
1 TTTTTAAGGATTTTTAAAGTA
* * * *
10461768 TTTTGAAGCATTTTTAAGGTT
1 TTTTTAAGGATTTTTAAAGTA
* * * *
10461789 TTTTTCATGGA-TTTCAATGGA
1 TTTTT-AAGGATTTTTAAAGTA
* * * * *
10461810 TTTTGAAAGAGTTTTCAAGGA
1 TTTTTAAGGATTTTTAAAGTA
*
10461831 ATTTTAAGGATTTTTAAAGT-
1 TTTTTAAGGATTTTTAAAGTA
10461851 TTTT
1 TTTT
10461855 GAAAGCACTT
Statistics
Matches: 198, Mismatches: 64, Indels: 33
0.67 0.22 0.11
Matches are distributed among these distances:
19 2 0.01
20 29 0.15
21 118 0.60
22 38 0.19
23 10 0.05
24 1 0.01
ACGTcount: A:0.29, C:0.04, G:0.17, T:0.50
Consensus pattern (21 bp):
TTTTTAAGGATTTTTAAAGTA
Found at i:10461751 original size:84 final size:83
Alignment explanation
Indices: 10461662--10461876 Score: 245
Period size: 84 Copynumber: 2.5 Consensus size: 83
10461652 TGTTAAAGCA
10461662 ATTTTTAAGGATTTTTTAAGTATTTTGAAGCATTTTTAAAGTTTTTTTCATGGATTTCAAGGGAT
1 ATTTTTAAGGATTTTTTAAGT-TTTTGAAGCATTTTTAAAGTTTTTTTCATGGATTTCAAGGGAT
* ** *
10461727 TGTT-AAGGTTTTTTTAAGG
65 T-TTGAAAGAGTTTTCAAGG
* * * * *
10461746 TTTTTTAAGCA-ATTTTAAGGTCTTTTGAAGCATTTTTAAGGTTTTTTTCATGGATTTCAATGGA
1 ATTTTTAAGGATTTTTTAA-GT-TTTTGAAGCATTTTTAAAGTTTTTTTCATGGATTTCAAGGGA
10461810 TTTTGAAAGAGTTTTCAAGG
64 TTTTGAAAGAGTTTTCAAGG
* * * *
10461830 AATTTTAAGGATTTTTAAAGTTTTTGAAAGCACTTTTGAAAGATTTT
1 ATTTTTAAGGATTTTTTAAGTTTTTG-AAGCA-TTTTTAAAGTTTTT
10461877 CGAAGTATTT
Statistics
Matches: 108, Mismatches: 18, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
83 13 0.12
84 79 0.73
85 16 0.15
ACGTcount: A:0.28, C:0.05, G:0.18, T:0.49
Consensus pattern (83 bp):
ATTTTTAAGGATTTTTTAAGTTTTTGAAGCATTTTTAAAGTTTTTTTCATGGATTTCAAGGGATT
TTGAAAGAGTTTTCAAGG
Found at i:10461763 original size:20 final size:20
Alignment explanation
Indices: 10461738--10461792 Score: 83
Period size: 21 Copynumber: 2.7 Consensus size: 20
10461728 GTTAAGGTTT
10461738 TTTTAAGGTTTTTTAAGCAA
1 TTTTAAGGTTTTTTAAGCAA
* *
10461758 TTTTAAGGTCTTTTGAAGCAT
1 TTTTAAGGT-TTTTTAAGCAA
10461779 TTTTAAGGTTTTTT
1 TTTTAAGGTTTTTT
10461793 TCATGGATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
20 13 0.42
21 18 0.58
ACGTcount: A:0.24, C:0.05, G:0.16, T:0.55
Consensus pattern (20 bp):
TTTTAAGGTTTTTTAAGCAA
Found at i:10461814 original size:42 final size:41
Alignment explanation
Indices: 10461683--10461816 Score: 130
Period size: 42 Copynumber: 3.2 Consensus size: 41
10461673 TTTTTTAAGT
*
10461683 ATTTTGAAGCATTTTTAAAGTTTTTTTCATGGATTTCAAGGG
1 ATTTTGAAGCATTTTTAAGGTTTTTTTCATGGATTTCAA-GG
** * * *
10461725 ATTGTT-AAGGTTTTTTTAAGG-TTTTTT-AAGCAATTTTAAGG
1 ATT-TTGAA-GCATTTTTAAGGTTTTTTTCATG-GATTTCAAGG
*
10461766 TCTTTTGAAGCATTTTTAAGGTTTTTTTCATGGATTTCAATGG
1 -ATTTTGAAGCATTTTTAAGGTTTTTTTCATGGATTTCAA-GG
10461809 ATTTTGAA
1 ATTTTGAA
10461817 AGAGTTTTCA
Statistics
Matches: 71, Mismatches: 13, Indels: 16
0.71 0.13 0.16
Matches are distributed among these distances:
41 16 0.23
42 40 0.56
43 15 0.21
ACGTcount: A:0.25, C:0.06, G:0.19, T:0.50
Consensus pattern (41 bp):
ATTTTGAAGCATTTTTAAGGTTTTTTTCATGGATTTCAAGG
Found at i:10461825 original size:31 final size:31
Alignment explanation
Indices: 10461790--10461849 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
10461780 TTTAAGGTTT
*
10461790 TTTTCATGG-ATTTCAATGGATTTTGAAAGAG
1 TTTTCAAGGAATTTCAA-GGATTTTGAAAGAG
* *
10461821 TTTTCAAGGAATTTTAAGGATTTTTAAAG
1 TTTTCAAGGAATTTCAAGGATTTTGAAAG
10461850 TTTTTGAAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 19 0.76
32 6 0.24
ACGTcount: A:0.32, C:0.05, G:0.20, T:0.43
Consensus pattern (31 bp):
TTTTCAAGGAATTTCAAGGATTTTGAAAGAG
Found at i:10461845 original size:10 final size:10
Alignment explanation
Indices: 10461502--10461932 Score: 100
Period size: 10 Copynumber: 40.8 Consensus size: 10
10461492 TTTCAATGTT
10461502 TTTTTAATGGA
1 TTTTTAA-GGA
**
10461513 TTTCAAAGGA
1 TTTTTAAGGA
*
10461523 TTTTCAAGGA
1 TTTTTAAGGA
10461533 GTTTTTAAGGAA
1 -TTTTTAAGG-A
** **
10461545 TTTCAAACCA
1 TTTTTAAGGA
*
10461555 TTTTTTAAAGA
1 -TTTTTAAGGA
**
10461566 TTTTTGAAATA
1 TTTTT-AAGGA
* *
10461577 TTTTGAAGCA
1 TTTTTAAGGA
*
10461587 TTTTTAAGGTTT
1 TTTTTAAGG--A
10461599 TTTTTCATA-GA
1 TTTTT-A-AGGA
10461610 TTTTTAAGGA
1 TTTTTAAGGA
* *
10461620 GTTTTCAAGAA
1 -TTTTTAAGGA
*
10461631 ATTTTAAGGA
1 TTTTTAAGGA
*
10461641 TTTTTAAAG-
1 TTTTTAAGGA
*
10461650 TTTGTTAAAGCAA
1 TTT-TT-AAG-GA
10461663 TTTTTAAGGA
1 TTTTTAAGGA
*
10461673 TTTTTTAAGTA
1 -TTTTTAAGGA
* *
10461684 TTTTGAAGCA
1 TTTTTAAGGA
**
10461694 TTTTTAAAGTT
1 TTTTT-AAGGA
*
10461705 TTTTTCATGGA
1 TTTTT-AAGGA
*
10461716 -TTTCAAGGGA
1 TTTTTAA-GGA
* *
10461726 TTGTTAAGGTT
1 TTTTTAAGG-A
*
10461737 TTTTTAAGGT
1 TTTTTAAGGA
*
10461747 TTTTTAAGCA
1 TTTTTAAGGA
*
10461757 ATTTTAAGG-
1 TTTTTAAGGA
*
10461766 TCTTTTGAAGCA
1 T-TTTT-AAGGA
*
10461778 TTTTTAAGGTT
1 TTTTTAAGG-A
*
10461789 TTTTTCATGGA
1 TTTTT-AAGGA
*
10461800 -TTTCAATGGA
1 TTTTTAA-GGA
* *
10461810 TTTTGAAAGA
1 TTTTTAAGGA
*
10461820 GTTTTCAAGGA
1 -TTTTTAAGGA
*
10461831 ATTTTAAGGA
1 TTTTTAAGGA
*
10461841 TTTTTAAAG-
1 TTTTTAAGGA
*
10461850 TTTTTGAAAGCA
1 TTTTT--AAGGA
* *
10461862 CTTTTGAAAGA
1 -TTTTTAAGGA
* *
10461873 TTTTCGAAGTA
1 TTTT-TAAGGA
* *
10461884 TTTTGAAGCA
1 TTTTTAAGGA
**
10461894 TTTTTAAAGTT
1 TTTTT-AAGGA
*
10461905 TTTTTATGGA
1 TTTTTAAGGA
**
10461915 TTTTTAAGCT
1 TTTTTAAGGA
10461925 TTTTTAAG
1 TTTTTAAG
10461933 ATCCTTTAAA
Statistics
Matches: 303, Mismatches: 84, Indels: 67
0.67 0.19 0.15
Matches are distributed among these distances:
9 11 0.04
10 143 0.47
11 127 0.42
12 12 0.04
13 9 0.03
14 1 0.00
ACGTcount: A:0.29, C:0.05, G:0.17, T:0.48
Consensus pattern (10 bp):
TTTTTAAGGA
Found at i:10461876 original size:32 final size:31
Alignment explanation
Indices: 10461831--10461908 Score: 79
Period size: 32 Copynumber: 2.5 Consensus size: 31
10461821 TTTTCAAGGA
*
10461831 ATTTT-AAGGATTTTTAAAGT-TTTTGAAAGC
1 ATTTTGAAAGATTTTTAAAGTATTTTG-AAGC
**
10461861 ACTTTTGAAAGATTTTCGAAGTATTTTGAAGC
1 A-TTTTGAAAGATTTTTAAAGTATTTTGAAGC
* *
10461893 ATTTTTAAAGTTTTTT
1 ATTTTGAAAGATTTTT
10461909 TATGGATTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
30 1 0.03
31 16 0.41
32 17 0.44
33 5 0.13
ACGTcount: A:0.31, C:0.05, G:0.15, T:0.49
Consensus pattern (31 bp):
ATTTTGAAAGATTTTTAAAGTATTTTGAAGC
Found at i:10462189 original size:21 final size:20
Alignment explanation
Indices: 10462143--10462241 Score: 81
Period size: 21 Copynumber: 4.8 Consensus size: 20
10462133 TTTGAGTATA
* * *
10462143 TTTAAGGTCATTTTAAGCATT
1 TTTAAGGT-TTTTTAAGGAAT
*
10462164 TTTAAGGTTATTTTAATGAAT
1 TTTAAGGTT-TTTTAAGGAAT
* * *
10462185 ATTAAAGGATTTTTAAGGAGT
1 -TTTAAGGTTTTTTAAGGAAT
* *
10462206 TTTAAAGTACTTTTAAGGAAT
1 TTTAAGGT-TTTTTAAGGAAT
10462227 TTTAAGGTTTTTTAA
1 TTTAAGGTTTTTTAA
10462242 AAGCATTTTT
Statistics
Matches: 60, Mismatches: 15, Indels: 7
0.73 0.18 0.09
Matches are distributed among these distances:
20 11 0.18
21 42 0.70
22 7 0.12
ACGTcount: A:0.33, C:0.03, G:0.16, T:0.47
Consensus pattern (20 bp):
TTTAAGGTTTTTTAAGGAAT
Found at i:10462199 original size:42 final size:41
Alignment explanation
Indices: 10462153--10462255 Score: 109
Period size: 42 Copynumber: 2.4 Consensus size: 41
10462143 TTTAAGGTCA
* *
10462153 TTTTAAGCATTTTTAAGGTTA-TTTTAATGAATATTAAAGGAT
1 TTTTAAGCATTTTTAAAG-TACTTTTAAGGAAT-TTAAAGGAT
* * * *
10462195 TTTTAAGGAGTTTTAAAGTACTTTTAAGGAATTTTAAGGTT
1 TTTTAAGCATTTTTAAAGTACTTTTAAGGAATTTAAAGGAT
10462236 TTTTAAAAGCATTTTTAAAG
1 TTTT--AAGCATTTTTAAAG
10462256 ATTTTTGAAA
Statistics
Matches: 50, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
41 13 0.26
42 25 0.50
43 12 0.24
ACGTcount: A:0.35, C:0.03, G:0.16, T:0.47
Consensus pattern (41 bp):
TTTTAAGCATTTTTAAAGTACTTTTAAGGAATTTAAAGGAT
Found at i:10462208 original size:11 final size:10
Alignment explanation
Indices: 10462153--10462398 Score: 73
Period size: 10 Copynumber: 23.4 Consensus size: 10
10462143 TTTAAGGTCA
*
10462153 TTTTAAGCAT
1 TTTTAAGGAT
*
10462163 TTTTAAGGTT
1 TTTTAAGGAT
*
10462173 ATTTTAATGAAT
1 -TTTTAA-GGAT
* *
10462185 ATTAAAGGAT
1 TTTTAAGGAT
10462195 TTTTAAGGAGT
1 TTTTAAGGA-T
* * *
10462206 TTTAAAGTAC
1 TTTTAAGGAT
*
10462216 TTTTAAGGAA
1 TTTTAAGGAT
*
10462226 TTTTAAGGTT
1 TTTTAAGGAT
*
10462236 TTTTAAAAGCAT
1 TTTT--AAGGAT
*
10462248 TTTTAAAGAT
1 TTTTAAGGAT
10462258 TTTTGAA--AT
1 TTTT-AAGGAT
*
10462267 CTTTTGAAGCAT
1 -TTTT-AAGGAT
* *
10462279 TTATAAGGTT
1 TTTTAAGGAT
**
10462289 TTTTCCCTGGAT
1 TTTT--AAGGAT
**
10462301 TTCAAAGGAAT
1 TTTTAAGG-AT
* *
10462312 TTTCAAGGAA
1 TTTTAAGGAT
10462322 TTTTAAGGAT
1 TTTTAAGGAT
* *
10462332 TTTTAAAGTT
1 TTTTAAGGAT
*
10462342 TTTTAAAGCATT
1 TTTT-AAGGA-T
**
10462354 TTTTAAATAT
1 TTTTAAGGAT
* *
10462364 TTTTGAAGTAC
1 TTTT-AAGGAT
* *
10462375 TTTGAAGCAT
1 TTTTAAGGAT
*
10462385 TTTTAAGGCT
1 TTTTAAGGAT
10462395 TTTT
1 TTTT
10462399 TTTATATATA
Statistics
Matches: 169, Mismatches: 52, Indels: 30
0.67 0.21 0.12
Matches are distributed among these distances:
9 2 0.01
10 102 0.60
11 43 0.25
12 22 0.13
ACGTcount: A:0.32, C:0.06, G:0.15, T:0.48
Consensus pattern (10 bp):
TTTTAAGGAT
Found at i:10462224 original size:31 final size:32
Alignment explanation
Indices: 10462189--10462261 Score: 85
Period size: 31 Copynumber: 2.3 Consensus size: 32
10462179 ATGAATATTA
*
10462189 AAGGATTTTTAAGGAGTTTT-AAAGTACTTTT
1 AAGGATTTTTAAGGAGTTTTAAAAGCACTTTT
* ** *
10462220 AAGGAATTTTAAGGTTTTTTAAAAGCATTTTT
1 AAGGATTTTTAAGGAGTTTTAAAAGCACTTTT
*
10462252 AAAGATTTTT
1 AAGGATTTTT
10462262 GAAATCTTTT
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
31 17 0.50
32 17 0.50
ACGTcount: A:0.34, C:0.03, G:0.16, T:0.47
Consensus pattern (32 bp):
AAGGATTTTTAAGGAGTTTTAAAAGCACTTTT
Found at i:10462250 original size:53 final size:52
Alignment explanation
Indices: 10462186--10462399 Score: 148
Period size: 53 Copynumber: 4.0 Consensus size: 52
10462176 TTAATGAATA
* * *
10462186 TTAAAGGATTTTTAAGGAGTTTTAAAGTACTTTTAAGGAATTTTAAGGTTTT
1 TTAAAGCATTTTTAAAGATTTTTAAAGTACTTTTAAGGAATTTTAAGGTTTT
*
10462238 TTAAAAGCATTTTTAAAGATTTTTGAAA-T-CTTTTGAA-GCATTTATAAGGTTTT
1 TT-AAAGCATTTTTAAAGATTTTT-AAAGTACTTTT-AAGGAATTT-TAAGGTTTT
*** * * * * * * * *
10462291 TTCCCTGGA-TTTCAAAGGAATTTTCAAGGAATTTTAAGGATTTTTAAAGTTTT
1 TT-AAAGCATTTTTAAA-GATTTTTAAAGTACTTTTAAGGAATTTTAAGGTTTT
* * * * *
10462344 TTAAAGCATTTTTTAAATATTTTTGAAGTACTTTGAAGCATTTTTAAGGCTTTT
1 TTAAAGCA-TTTTTAAAGATTTTTAAAGTACTTTTAAGGAATTTTAAGG-TTTT
10462398 TT
1 TT
10462400 TTATATATAG
Statistics
Matches: 121, Mismatches: 30, Indels: 20
0.71 0.18 0.12
Matches are distributed among these distances:
52 22 0.18
53 76 0.63
54 23 0.19
ACGTcount: A:0.31, C:0.06, G:0.15, T:0.47
Consensus pattern (52 bp):
TTAAAGCATTTTTAAAGATTTTTAAAGTACTTTTAAGGAATTTTAAGGTTTT
Found at i:10462309 original size:106 final size:107
Alignment explanation
Indices: 10462199--10462399 Score: 282
Period size: 106 Copynumber: 1.9 Consensus size: 107
10462189 AAGGATTTTT
* * * *
10462199 AAGGAGTTTTAAAGTACTTTTAAGGAATTTTAAGGTTTTTTAAAAGCA-TTTTTAAAGATTTTTG
1 AAGGAATTTTAAAGGAATTTTAAGGAATTTTAAAGTTTTTT-AAAGCATTTTTTAAAGATTTTTG
10462263 AAAT-CTTTTGAAGCATTTATAAGG-TTTTTTCCCTGGATTTCA
65 AAATAC-TTTGAAGCATTTATAAGGCTTTTTTCCCTGGATTTCA
* * *
10462305 AAGGAATTTTCAAGGAATTTTAAGGATTTTTAAAGTTTTTTAAAGCATTTTTTAAATATTTTTGA
1 AAGGAATTTTAAAGGAATTTTAAGGAATTTTAAAGTTTTTTAAAGCATTTTTTAAAGATTTTTGA
* *
10462370 AGTACTTTGAAGCATTTTTAAGGCTTTTTT
66 AATACTTTGAAGCATTTATAAGGCTTTTTT
10462400 TTATATATAG
Statistics
Matches: 83, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
105 6 0.07
106 70 0.84
107 7 0.08
ACGTcount: A:0.31, C:0.06, G:0.15, T:0.47
Consensus pattern (107 bp):
AAGGAATTTTAAAGGAATTTTAAGGAATTTTAAAGTTTTTTAAAGCATTTTTTAAAGATTTTTGA
AATACTTTGAAGCATTTATAAGGCTTTTTTCCCTGGATTTCA
Found at i:10462359 original size:32 final size:31
Alignment explanation
Indices: 10462322--10462398 Score: 82
Period size: 32 Copynumber: 2.5 Consensus size: 31
10462312 TTTCAAGGAA
**
10462322 TTTTAAGGATTTTTAAAGTTTTTTAAAGCATT
1 TTTTAAGGATTTTTAAAGTACTTTAAAGCA-T
** * *
10462354 TTTTAAATATTTTTGAAGTACTTTGAAGCAT
1 TTTTAAGGATTTTTAAAGTACTTTAAAGCAT
*
10462385 TTTTAAGGCTTTTT
1 TTTTAAGGATTTTT
10462399 TTTATATATA
Statistics
Matches: 36, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
31 12 0.33
32 24 0.67
ACGTcount: A:0.29, C:0.05, G:0.13, T:0.53
Consensus pattern (31 bp):
TTTTAAGGATTTTTAAAGTACTTTAAAGCAT
Found at i:10462476 original size:10 final size:10
Alignment explanation
Indices: 10462463--10462509 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
10462453 TTCAAAAGAT
*
10462463 TTTTAAGGAGT
1 TTTTAAGGA-A
10462474 TTTTAAGGAA
1 TTTTAAGGAA
*
10462484 TCTTAAGGAA
1 TTTTAAGGAA
10462494 TTTTAA-GATA
1 TTTTAAGGA-A
10462504 TTTTAA
1 TTTTAA
10462510 AACCTTTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
9 2 0.06
10 21 0.66
11 9 0.28
ACGTcount: A:0.36, C:0.02, G:0.17, T:0.45
Consensus pattern (10 bp):
TTTTAAGGAA
Found at i:10462529 original size:10 final size:10
Alignment explanation
Indices: 10462516--10462748 Score: 68
Period size: 10 Copynumber: 22.4 Consensus size: 10
10462506 TTAAAACCTT
10462516 TTTTTAAAGA
1 TTTTTAAAGA
*
10462526 TTTTTTAAG-
1 TTTTTAAAGA
*
10462535 TCTTTTGAAGCA
1 T-TTTTAAAG-A
*
10462547 ATTTT-AAGTA
1 TTTTTAAAG-A
* *
10462557 GTTTTCAAGGA
1 -TTTTTAAAGA
*
10462568 ATTTTAAAGA
1 TTTTTAAAGA
* *
10462578 TTTTGAAAGT
1 TTTTTAAAGA
*
10462588 TTTTTCAAACA
1 TTTTT-AAAGA
10462599 TTTTTTAAAGA
1 -TTTTTAAAGA
* *
10462610 TTTTTGAAGC
1 TTTTTAAAGA
* *
10462620 GTTTTGAAGTA
1 TTTTTAAAG-A
10462631 TTTTT-AAGA
1 TTTTTAAAGA
* *
10462640 CTTTTTTCATGAA
1 --TTTTTAAAG-A
10462653 TTTTT-AAGCA
1 TTTTTAAAG-A
10462663 -TTTTAAAGA
1 TTTTTAAAGA
10462672 TCGTTTT-AAGTA
1 T--TTTTAAAG-A
*
10462684 TATTT-AAGA
1 TTTTTAAAGA
10462693 TTTTTAAGAGA
1 TTTTTAA-AGA
* *
10462704 TTTTTCATGAA
1 TTTTTAAAG-A
* *
10462715 ATTTGAAAGA
1 TTTTTAAAGA
*
10462725 TTTTTAATG-
1 TTTTTAAAGA
10462734 TTTTTAAAGGA
1 TTTTTAAA-GA
10462745 TTTT
1 TTTT
10462749 AAATTTCTTT
Statistics
Matches: 164, Mismatches: 37, Indels: 43
0.67 0.15 0.18
Matches are distributed among these distances:
9 19 0.12
10 78 0.48
11 51 0.31
12 15 0.09
13 1 0.01
ACGTcount: A:0.32, C:0.05, G:0.14, T:0.49
Consensus pattern (10 bp):
TTTTTAAAGA
Found at i:10462551 original size:20 final size:21
Alignment explanation
Indices: 10462528--10462574 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
10462518 TTTAAAGATT
*
10462528 TTTTAAGT-CTTTTGAAGCAA
1 TTTTAAGTACTTTTCAAGCAA
* *
10462548 TTTTAAGTAGTTTTCAAGGAA
1 TTTTAAGTACTTTTCAAGCAA
10462569 TTTTAA
1 TTTTAA
10462575 AGATTTTGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 8 0.35
21 15 0.65
ACGTcount: A:0.32, C:0.06, G:0.15, T:0.47
Consensus pattern (21 bp):
TTTTAAGTACTTTTCAAGCAA
Found at i:10462654 original size:84 final size:84
Alignment explanation
Indices: 10462463--10462670 Score: 201
Period size: 84 Copynumber: 2.5 Consensus size: 84
10462453 TTCAAAAGAT
* * * * * * * *
10462463 TTTTAAGGAGTTTTTAAGGAATCTTAAGGAATTTT-AAGATATTTTAAAACCTTTTTTTAAAGAT
1 TTTTAAGTAGTTTTCAAGGAATTTTAAAGCATTTTAAAG-TTTTTTCAAA-CATTTTTTAAAGAT
*
10462527 TTTTTAAGTCTTTTGAAGCAA
64 TTTTGAAGTCTTTTGAAGCAA
10462548 TTTTAAGTAGTTTTCAAGGAATTTTAAAG-ATTTTGAAAGTTTTTTCAAACATTTTTTAAAGATT
1 TTTTAAGTAGTTTTCAAGGAATTTTAAAGCATTTT-AAAGTTTTTTCAAACATTTTTTAAAGATT
* *
10462612 TTTGAAG-CGTTTTGAAGTAT
65 TTTGAAGTC-TTTTGAAGCAA
* * *
10462632 TTTTAAG-ACTTTTTTC-ATGAATTTTTAAGCATTTTAAAG
1 TTTTAAGTA--GTTTTCAAGGAATTTTAAAGCATTTTAAAG
10462671 ATCGTTTTAA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
83 2 0.02
84 56 0.54
85 43 0.41
86 3 0.03
ACGTcount: A:0.33, C:0.06, G:0.14, T:0.48
Consensus pattern (84 bp):
TTTTAAGTAGTTTTCAAGGAATTTTAAAGCATTTTAAAGTTTTTTCAAACATTTTTTAAAGATTT
TTGAAGTCTTTTGAAGCAA
Found at i:10462666 original size:32 final size:30
Alignment explanation
Indices: 10462621--10462731 Score: 80
Period size: 32 Copynumber: 3.5 Consensus size: 30
10462611 TTTTGAAGCG
*
10462621 TTTTGAAGTATTTTTAAGACTTTTTTCATGAA
1 TTTTTAAG-ATTTTTAAGA-TTTTTTCATGAA
* * * *
10462653 TTTTTAAGCATTTTAAAGATCGTTTT-AAGTA
1 TTTTTAAG-ATTTTTAAGAT-TTTTTCATGAA
* *
10462684 TATTTAAGATTTTTAAGAGATTTTTCATGAAA
1 TTTTTAAGATTTTTAAGA-TTTTTTCATG-AA
**
10462716 TTTGAAAGATTTTTAA
1 TTTTTAAGATTTTTAA
10462732 TGTTTTTAAA
Statistics
Matches: 60, Mismatches: 15, Indels: 8
0.72 0.18 0.10
Matches are distributed among these distances:
30 13 0.22
31 13 0.22
32 34 0.57
ACGTcount: A:0.33, C:0.05, G:0.13, T:0.50
Consensus pattern (30 bp):
TTTTTAAGATTTTTAAGATTTTTTCATGAA
Found at i:10462889 original size:11 final size:11
Alignment explanation
Indices: 10462873--10462948 Score: 52
Period size: 10 Copynumber: 7.2 Consensus size: 11
10462863 TGAGTGGACA
10462873 TTAAAGGATTT
1 TTAAAGGATTT
*
10462884 TTAAA-GAGTT
1 TTAAAGGATTT
* *
10462894 TTGAAGGAATT
1 TTAAAGGATTT
**
10462905 TT-AAGGAACT
1 TTAAAGGATTT
*
10462915 TT-AAGGTTTT
1 TTAAAGGATTT
*
10462925 TTAAAGCATTTT
1 TTAAAGGA-TTT
10462937 TTAAA-GATTT
1 TTAAAGGATTT
10462947 TT
1 TT
10462949 GAAGTCTTTT
Statistics
Matches: 52, Mismatches: 10, Indels: 7
0.75 0.14 0.10
Matches are distributed among these distances:
10 29 0.56
11 15 0.29
12 8 0.15
ACGTcount: A:0.34, C:0.03, G:0.17, T:0.46
Consensus pattern (11 bp):
TTAAAGGATTT
Found at i:10463253 original size:12 final size:11
Alignment explanation
Indices: 10463225--10463252 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
10463215 ATTTTGAGCA
10463225 TTTTTTAAGGT
1 TTTTTTAAGGT
10463236 TTTTTTAAGGT
1 TTTTTTAAGGT
10463247 TTTTTT
1 TTTTTT
10463253 TTTGCTCTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.14, C:0.00, G:0.14, T:0.71
Consensus pattern (11 bp):
TTTTTTAAGGT
Found at i:10464338 original size:172 final size:171
Alignment explanation
Indices: 10463418--10465479 Score: 2467
Period size: 171 Copynumber: 12.1 Consensus size: 171
10463408 NNNNNNNNNC
* *
10463418 ATTATGAAACCATTTAAAGCGAGTAATAGGGCTT-CGAAGGCATCAATGACTATAAATGGACTTT
1 ATTATGAAACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATCAATGACTATAAATGAACTTT
* * * *
10463482 TCTTGTCAATGGATGGCTTTCGCGTCATGTTTCTAGAGGTAAACATTCAACTATAATCTGTTGTC
66 TCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTAGAGGTAAACATTCAATTATAATCTGTTTTA
* * * *
10463547 ACCAAAAAGGTAAAAAAACTCATCATAAAATCAATT-CTGAG
131 ACCAAAAAGGAAAAAAAATTCAACTTAAAATCAATTAC-GAG
* * * * * *
10463588 ATTAT-ACAACAATTTAAATCGAATAATAAGGGTTTCC-AAGGCATGAGTGACTATAAATGAACT
1 ATTATGA-AACCATTTAAAGCGAGTAATAA-GGCTTCCGAAGGCATCAATGACTATAAATGAACT
** * * * * * * *
10463651 TTTCTTCCCAATGGATGGCTTTCACTTCACGTTTCTCGAGGCAAAAAATCAATTATAGTCTGTTT
64 TTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTAGAGGTAAACATTCAATTATAATCTGTTT
* * * * * * *
10463716 TAACCAAAAACGTAAATAAATTGAACTGAAAATCAATTATGAA
129 TAACCAAAAAGGAAAAAAAATTCAACTTAAAATCAATTACGAG
* * * *
10463759 ACTATAAAACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATGAATGACTATAAAGGAACTTT
1 ATTATGAAACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATCAATGACTATAAATGAACTTT
* * ** * *
10463824 TCTTCTCAATGAATATCTTTCGCTTCATGTTTTTCGAGGTAAACATTCAATTATAATCTGTTTTA
66 TCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTAGAGGTAAACATTCAATTATAATCTGTTTTA
* *
10463889 GCCAAAAA-GATCAAAAAATTCAACTTAAAATCAATTACGAG
131 ACCAAAAAGGA-AAAAAAATTCAACTTAAAATCAATTACGAG
* * * * * *
10463930 ATTATGAAACCATTTAAAGCAAGTAATAAGGCTTTCGAAGGTATGAGTGACTATAAATGGACCTT
1 ATTATGAAACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATCAATGACTATAAAT-GAACTT
* * * ** * * *
10463995 TT-TTGTCAATGGATGGCTTTTGCTTCATGTTTTTCGAGAAAAATATTCAATTATAATTTATTTT
65 TTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTAGAGGTAAACATTCAATTATAATCTGTTTT
* **
10464059 AGCCAAAAAGTG--AAAAAATTCAACTTAAAATCAATTATAAG
130 AACCAAAAAG-GAAAAAAAATTCAACTTAAAATCAATTACGAG
* * * * * * *
10464100 ATTATAAAACCACTTAAAGCGAGTAATAAGGCTTTCAAAGGCATCAGTGACTACAAATGGACTTT
1 ATTATGAAACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATCAATGACTATAAATGAACTTT
* *
10464165 TCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTAGAGGTAAACATTCAACTATAATTTGTTTTA
66 TCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTAGAGGTAAACATTCAATTATAATCTGTTTTA
10464230 ACCAAAAAGGCAAAAAAAATTCAACTTAAAATCAATTACGAG
131 ACCAAAAAGG-AAAAAAAATTCAACTTAAAATCAATTACGAG
* *
10464272 ATTATGAAACCATTTAAAGCGAGTAATAGGGCTTCCAAAGGCATCAATGACTATAAATGAACTTT
1 ATTATGAAACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATCAATGACTATAAATGAACTTT
* * * *
10464337 TCTTGTCAATGGATGGCTTTCGCTTTAGGTTTCTAAAGGTAAACATTCAATTATAATATGTTTTA
66 TCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTAGAGGTAAACATTCAATTATAATCTGTTTTA
* *
10464402 ACCAAAAAGGCAACAAAAATTCAACTTAAAATCAATTATGAG
131 ACCAAAAAGG-AAAAAAAATTCAACTTAAAATCAATTACGAG
*
10464444 ATTATGAAACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATCAATGACTATAAATGTACTTT
1 ATTATGAAACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATCAATGACTATAAATGAACTTT
* *
10464509 TCTTGTTAATGGATGGCTTTCGCTTCACGTTTCTAGAGGTAAACATTCAATTATAATCTGTTTTA
66 TCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTAGAGGTAAACATTCAATTATAATCTGTTTTA
* * * * *
10464574 ACCAAAAACGTAAATAAATTCAA-TTGAAAATCAATTATGAA
131 ACCAAAAAGGAAAAAAAATTCAACTT-AAAATCAATTACGAG
* * * * * *
10464615 ACTATAAAACCATTTAAAGCGAGTAATAAGGCTTCCAAAGGCATGAGTGACTATAAAGGAACTTT
1 ATTATGAAACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATCAATGACTATAAATGAACTTT
* * ** * *
10464680 TCTTCTCAATGAATATCTTTTGCTTCATGTTTCTCGAGGTAAACATTCAATTATAATCTGTTTTA
66 TCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTAGAGGTAAACATTCAATTATAATCTGTTTTA
** *
10464745 AGTAAAAAGGTAAAAAAATTCAACTTAAAATCAATTACGAG
131 ACCAAAAAGGAAAAAAAATTCAACTTAAAATCAATTACGAG
* * ** * * * *
10464786 ATTATGAAACCATTTAAAGCAAGTAAGAAGGCTTTTGAAGGCATGAGTGACTAGAAATGGACTTT
1 ATTATGAAACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATCAATGACTATAAATGAACTTT
* * * *** * * *
10464851 TTTTGTCAATGGATGGCTTTCGCTTCATGTTTTTCGAAAAAAATATTCAATTATAATTTATTTTA
66 TCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTAGAGGTAAACATTCAATTATAATCTGTTTTA
* * **
10464916 GCCAAAAAGGTAAAAAAATTCAACTTAAAATCAATTATAAG
131 ACCAAAAAGGAAAAAAAATTCAACTTAAAATCAATTACGAG
* * * * * * *
10464957 ATTGTAAAACCACTTAAAGCGAGTAATAAGGCTTTCGAAGGCATCAAGGACTACAAATGGACTTT
1 ATTATGAAACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATCAATGACTATAAATGAACTTT
* * * ** * * *
10465022 TCTTATCAATAGATGGCTTTCGCTTCATGTTTTTCA-AGAAAAATATTCAATTATAATTTATTTT
66 TCTTGTCAATGGATGGCTTTCGCTTCATGTTTCT-AGAGGTAAACATTCAATTATAATCTGTTTT
* * * **
10465086 AGCCAAAAA-GATAAAAAATTTAACTTAAAATCAATTATAAG
130 AACCAAAAAGGAAAAAAAATTCAACTTAAAATCAATTACGAG
* * * * *
10465127 ATTGTAAAACCACTTAAAGCGAGTAATAAGGCTTTCGAAGGCATCAGA-GACTACAAAT-AGACT
1 ATTATGAAACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATCA-ATGACTATAAATGA-ACT
* *
10465190 TTTCTTGTCAATGGATGGCTTTCACTTCATGTTTCTAGAGGTAAACAATCAATTATAATCTGTTT
64 TTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTAGAGGTAAACATTCAATTATAATCTGTTT
* * * *
10465255 TAACCAAAAAGGCAAAAAACATTGAACTTGAAATCAATTACAAG
129 TAACCAAAAAGG-AAAAAAAATTCAACTTAAAATCAATTACGAG
* * *
10465299 ATTATGAAACCATTTAAAACGAGTAATAAGGCTTCCGAACGCATCAATGACTATAAATGGACTTT
1 ATTATGAAACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATCAATGACTATAAATGAACTTT
* *
10465364 TCTTGTCAATGGATGGCTTTTGCTTCAAGTTTCTAGAGGTAAACATTCAATTATAATCTGTTTTA
66 TCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTAGAGGTAAACATTCAATTATAATCTGTTTTA
* *
10465429 ACCAAAAAGGCAAAAAAATTTCAACTTAAAATCGATTACGAG
131 ACCAAAAAGG-AAAAAAAATTCAACTTAAAATCAATTACGAG
10465471 ATTATGAAA
1 ATTATGAAA
10465480 TCNNNNNNNN
Statistics
Matches: 1643, Mismatches: 225, Indels: 46
0.86 0.12 0.02
Matches are distributed among these distances:
169 9 0.01
170 323 0.20
171 797 0.49
172 513 0.31
173 1 0.00
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.32
Consensus pattern (171 bp):
ATTATGAAACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATCAATGACTATAAATGAACTTT
TCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTAGAGGTAAACATTCAATTATAATCTGTTTTA
ACCAAAAAGGAAAAAAAATTCAACTTAAAATCAATTACGAG
Found at i:10465810 original size:24 final size:24
Alignment explanation
Indices: 10465767--10465817 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
10465757 TATATTATAT
* **
10465767 ATTTTTTATTGATTCTTCAAAATA
1 ATTTTTTATTGAATAATCAAAATA
*
10465791 ATTTTTTATTGAATAATCAATATA
1 ATTTTTTATTGAATAATCAAAATA
10465815 ATT
1 ATT
10465818 AAAAAATAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.37, C:0.06, G:0.04, T:0.53
Consensus pattern (24 bp):
ATTTTTTATTGAATAATCAAAATA
Found at i:10472346 original size:18 final size:18
Alignment explanation
Indices: 10472323--10472357 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
10472313 AACATAATCT
10472323 TGCATTCCTTTACGCACG
1 TGCATTCCTTTACGCACG
* *
10472341 TGCATTTCTTTATGCAC
1 TGCATTCCTTTACGCAC
10472358 TAGATGCATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.29, G:0.14, T:0.40
Consensus pattern (18 bp):
TGCATTCCTTTACGCACG
Found at i:10473364 original size:22 final size:22
Alignment explanation
Indices: 10473339--10473425 Score: 174
Period size: 22 Copynumber: 4.0 Consensus size: 22
10473329 TTCACTCTCA
10473339 ATAAGCACACAAATTCTCTTGT
1 ATAAGCACACAAATTCTCTTGT
10473361 ATAAGCACACAAATTCTCTTGT
1 ATAAGCACACAAATTCTCTTGT
10473383 ATAAGCACACAAATTCTCTTGT
1 ATAAGCACACAAATTCTCTTGT
10473405 ATAAGCACACAAATTCTCTTG
1 ATAAGCACACAAATTCTCTTG
10473426 ATTTACACAC
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 65 1.00
ACGTcount: A:0.37, C:0.23, G:0.09, T:0.31
Consensus pattern (22 bp):
ATAAGCACACAAATTCTCTTGT
Found at i:10482651 original size:171 final size:170
Alignment explanation
Indices: 10482359--10484215 Score: 1937
Period size: 171 Copynumber: 10.8 Consensus size: 170
10482349 CCGTTCCCCA
*
10482359 AGGTAAACATTCAGTTATAATCTGTTTTAAACAAAAAATAGTAAAAATAATTCAACTTAAAATCA
1 AGGTAAACATTCAATTATAATCTGTTTT-AACAAAAAAT-GTAAAAA-AATTCAACTTAAAATCA
* * * * *
10482424 ATAATGAGACTATAAAACCAATTAAAGCAAGTAATAAGGCTTTTGAAGGCATGAATGACTATAAA
63 ATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAA
** * * * * *
10482489 TAAACTTTTCTTGTCAGTCGATGGCTTTCGCTTCACGTTTGCCT
128 TGGACTTTTCTTGTTAATCGAGGGCTTTAGCCTCACGTTT-CCT
* * * * * *
10482533 AGGCAAACATTCAATTGTTATCTGTTTCAACAACAAATGTAAGAAAATTCAACTTAAAATCAATA
1 AGGTAAACATTCAATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATA
* * *
10482598 ATGAGATTATAAAAGCATTTAAAGCGAGTAATAAGGCATTCGAAGGCATGAATGACTATAAATGG
66 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGG
** * * * * *
10482663 ACTTTTCTAATTAATGGATGACTTTCGCCTCACGTTTCACG
131 ACTTTTCTTGTTAATCGAGGGCTTTAGCCTCACGTTTC-CT
* **
10482704 AGGTAAACATTCAATTATAACCT-TTCTTAACCGAAAATGTAAAAAAATTCAACTTAAAATCAAT
1 AGGTAAACATTCAATTATAATCTGTT-TTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAAT
* * * *** *
10482768 TATGAGATTATAAAACCATTTTAAGCGAGTAATAAGGCTTTTGAAAAAATGAGTGACTATAAATT
65 AATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATG
* * * * *
10482833 GACTTTTCCTGTTAA-CGGAGGGTTTTAGCCACACAGTTCCCG
130 GACTTTTCTTGTTAATC-GAGGGCTTTAGCCTCAC-GTTTCCT
* *
10482875 AGGTTAACATTCAATTATAATCTGTTTTAACAAAAAATATAAAAAAATTCAACTTAAAATCAATA
1 AGGTAAACATTCAATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATA
* * * * *
10482940 ATGAGATTATAAAAGCATTTAAAGCGAGTAATAAGGTTTTTGAAGGCAAGAGTGACTATGAATGG
66 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGG
** * * *
10483005 GGTTTTCTTATCAA-CGGAGGGTTTTAGCCTCACGTTTCCT
131 ACTTTTCTTGTTAATC-GAGGGCTTTAGCCTCACGTTTCCT
* * * *
10483045 AAGGTATACATTCAATTATAACCTGTTTTCACAAAATAATG-ATAAAAATTTCAACTTAAAATCA
1 -AGGTAAACATTCAATTATAATCTGTTTTAACAAAA-AATGTA-AAAAAATTCAACTTAAAATCA
* * * * * *
10483109 ATAATCAAATGATAAAACCTTTTAAAGCGAGTAATAAGGCTTTTGAAGGTATGAGTGACTATAAA
63 ATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAA
* ** * * * *
10483174 TGGACTTTTCTTGTTAATGGATAGCTTTCGCTTTACGTTTCTT
128 TGGACTTTTCTTGTTAATCGAGGGCTTTAGCCTCACGTTTCCT
* * * * * *
10483217 GAGGCAAACATTTAATTATAAACT-TTCTTAATC-AAAAATGTAAGAAAATTCAACTTGAAATCG
1 -AGGTAAACATTCAATTATAATCTGTT-TTAA-CAAAAAATGTAAAAAAATTCAACTTAAAATCA
* * * *
10483280 ATTATGAGATTATAAAACCATTTTAAGCGACTAATAAGGC-TTCTGAAGGCATGGGTGACTATAA
63 ATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTC-GAAGGCATGAGTGACTATAA
* * * *
10483344 ATGGACTTTT-TCTATTAATGGAGGGTTTTAGCCTCACGTTTCCCA
127 ATGGACTTTTCT-TGTTAATCGAGGGCTTTAGCCTCACGTTT-CCT
* * ** *
10483389 AGGTAAACAGTCAATTATAATCTATGGTAACAAAAAATGTAAAAATATTCAACTTAAAATCAATA
1 AGGTAAACATTCAATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATA
* ** * * *
10483454 ATGAGATTATAAAACCAATTAAAGTAAGTAATAAGGCTTTCGAAGACATGAATGGCTATAAATGG
66 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGG
* * * ** * *
10483519 GCTTTTCTTGTCAGTCGATAGCTTTCGCTTCACGTTTGCCT
131 ACTTTTCTTGTTAATCGAGGGCTTTAGCCTCACGTTT-CCT
* * * * *
10483560 AGGCAAACATTCAATTATAATCTGTTTCAACAAAAAATGTAAGAAAATTCAACTTAAAATTAATT
1 AGGTAAACATTCAATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATA
* * * *
10483625 ATGAGATTATAAAATCATTTAAAGCAAGTAATAAGGCATTCGAAGGCATGAATGACTATAAATGG
66 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGG
** * * * * *
10483690 ACTTTTCTAATTAATGGATGGCTTTCA-CCTTACATTTCAT
131 ACTTTTCTTGTTAATCGAGGGCTTT-AGCCTCACGTTTCCT
* * * *
10483730 GAGGTAAACATTCAGTTATAACCT-TTCTTAACCAAAAATATAAAAAAATTCAACTTAAAATCAA
1 -AGGTAAACATTCAATTATAATCTGTT-TTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAA
***
10483794 TAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC-TTCTGAAAAAATGAGTGACTATAAA
64 TAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTC-GAAGGCATGAGTGACTATAAA
* * * * * * *
10483858 TTGACTTTTCCTATTAATGGAGGGTTTTAGCCACACGTTTCCCA
128 TGGACTTTTCTTGTTAATCGAGGGCTTTAGCCTCACGTTT-CCT
*
10483902 AGGTTAACATTCAATTATAAT-TCGTTTTAACAAAAACA--TAAAAAAATTCAACTTAAAATCAA
1 AGGTAAACATTCAATTATAATCT-GTTTTAACAAAAA-ATGTAAAAAAATTCAACTTAAAATCAA
* * * * * *
10483964 TAATGAGATTATAAAACCATTTAAAGCGAGTAGTAAAGTTTTTGAAGGCAAGAGTGACTATGAAT
64 TAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAAT
* * * *
10484029 GGGCTTTTCTTGTCAA-CGGAGGGTTTTAGCCTTACGTTTCCT
129 GGACTTTTCTTGTTAATC-GAGGGCTTTAGCCTCACGTTTCCT
* * * *
10484071 AAGGTATACATTCAATTATAACCTGTTTTCACAAAATAATG-ATAAAAATTTCAACTTAAAATCA
1 -AGGTAAACATTCAATTATAATCTGTTTTAACAAAA-AATGTA-AAAAAATTCAACTTAAAATCA
* * * *
10484135 ATAATTAGATGATAAAACCTTTTAAAGCGAGTAATAGGGCTTTCGAAGGCATGAGTGACTATAAA
63 ATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAA
10484200 TGGACTTTTTCTTGTT
128 TGGAC-TTTTCTTGTT
10484216 NNNNNNNNNN
Statistics
Matches: 1391, Mismatches: 255, Indels: 75
0.81 0.15 0.04
Matches are distributed among these distances:
169 2 0.00
170 158 0.11
171 953 0.69
172 236 0.17
173 19 0.01
174 23 0.02
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.32
Consensus pattern (170 bp):
AGGTAAACATTCAATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATA
ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGG
ACTTTTCTTGTTAATCGAGGGCTTTAGCCTCACGTTTCCT
Found at i:10483743 original size:685 final size:678
Alignment explanation
Indices: 10482358--10484214 Score: 2171
Period size: 685 Copynumber: 2.7 Consensus size: 678
10482348 ACCGTTCCCC
*
10482358 AAGGTAAACATTCAGTTATAATCTGTTTTAAACAAAAAATAGTAAAAATAATTCAACTTAAAATC
1 AAGGTAAACATTCAGTTATAACCTGTTTT-AACAAAAAATA-TAAAAAT--TTCAACTTAAAATC
* * * * *
10482423 AATAATGAGACTATAAAACCAATTAAAGCAAGTAATAAGGCTTTTGAAGGCATGAATGACTATAA
62 AATAATGA-AATATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGACTATAA
* * * * * *
10482488 ATAAACTTTTCTTGTCAGTCGATGGCTTTCGCTTCACGTTTGCCTAGGCAAACATTCAATTGTTA
126 ATAGACTTTTCTTGTTAATGGATGGCTTTCGCTTCACGTTT-CCTAGGCAAACATTCAATTATAA
* *
10482553 TCTGTTTCAACAACAAATGTAAGAAAATTCAACTTAAAATCAATAATGAGATTATAAAAGCATTT
190 TCT-TTTTAACAA-AAATGTAAGAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTT
* *
10482618 AAAGCGAGTAATAAGGCATTC-GAAGGCATGAATGACTATAAATGGACTTTTCTAATTAATGGAT
253 AAAGCGAGTAATAAGGC-TTCTGAAGGCATGAGTGACTATAAATGGACTTTTCT-ATTAATGGAG
** * * * * **
10482682 GACTTTCGCCTCACGTTTCACGAGGTAAACATTCAATTATAACCTTTCTTAACCGAAAATGTAAA
316 GGTTTTAGCCTCACGTTTCCCAAGGTAAACATTCAATTATAACCTATCTTAACAAAAAATGTAAA
* * * *
10482747 AAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTTAAGCGAGTAATAAGGCTTTTGA
381 AATATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGA
* * * * * * *
10482812 AAAAATGAGTGACTATAAATTGACTTTTCCTGTTAACGGAGGGTTTTAGCCACACAGTTCCCGAG
446 AGACATGAGTGACTATAAATGGACTTTTCTTGTCAACGGAGAGCTTTAGCCACACAGTTCCCGAG
** *
10482877 GTTAACATTCAATTATAATCTGTTTTAACAAAAAATATAAAAAAATTCAACTTAAAATCAATAAT
511 GCAAACATTCAATTATAATCTGTTTCAACAAAAAATATAAAAAAATTCAACTTAAAATCAATAAT
* ** * * * **
10482942 GAGATTATAAAAGCATTTAAAGCGAGTAATAAGGTTTTTGAAGGCAAGAGTGACTATGAATGGGG
576 GAGATTATAAAAGCATTTAAAGCAAGTAATAAGGCATTCGAAGGCAAGAATGACTATAAATGGAC
* * * * *
10483007 TTTTCTTATCAACGGAGGGTTTTAGCCTCACGTTTCCT
641 TTTTCTAATCAACGGAGGCTTTCAGCCTCACATTTCAT
* * *
10483045 AAGGTATACATTCAATTATAACCTGTTTTCACAAAATAATGATAAAAATTTCAACTTAAAATCAA
1 AAGGTAAACATTCAGTTATAACCTGTTTTAACAAAA-AAT-ATAAAAATTTCAACTTAAAATCAA
* * *
10483110 TAATCAAATGATAAAACCTTTTAAAGCGAGTAATAAGGCTTTTGAAGGTATGAGTGACTATAAAT
64 TAATGAAAT-ATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAAT
* * * * * *
10483175 GGACTTTTCTTGTTAATGGATAGCTTTCGCTTTACGTTTCTTGAGGCAAACATTTAATTATAAAC
128 AGACTTTTCTTGTTAATGGATGGCTTTCGCTTCACGTTTCCT-AGGCAAACATTCAATTATAATC
* * * *
10483240 TTTCTTAATCAAAAATGTAAGAAAATTCAACTTGAAATCGATTATGAGATTATAAAACCATTTTA
192 TTT-TTAA-CAAAAATGTAAGAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAA
* *
10483305 AGCGACTAATAAGGCTTCTGAAGGCATGGGTGACTATAAATGGACTTTTTCTATTAATGGAGGGT
255 AGCGAGTAATAAGGCTTCTGAAGGCATGAGTGACTATAAATGGAC-TTTTCTATTAATGGAGGGT
* * **
10483370 TTTAGCCTCACGTTTCCCAAGGTAAACAGTCAATTATAATCTATGGTAACAAAAAATGTAAAAAT
319 TTTAGCCTCACGTTTCCCAAGGTAAACATTCAATTATAACCTATCTTAACAAAAAATGTAAAAAT
* **
10483435 ATTCAACTTAAAATCAATAATGAGATTATAAAACCAATTAAAGTAAGTAATAAGGCTTTCGAAGA
384 ATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGA
* * * * * * ** * *
10483500 CATGAATGGCTATAAATGGGCTTTTCTTGTCAGTC-GATAGCTTTCGCTTCAC-GTTTGCCTAGG
449 CATGAGTGACTATAAATGGACTTTTCTTGTCA-ACGGAGAGCTTTAGCCACACAG-TTCCCGAGG
* * * *
10483563 CAAACATTCAATTATAATCTGTTTCAACAAAAAATGTAAGAAAATTCAACTTAAAATTAATTATG
512 CAAACATTCAATTATAATCTGTTTCAACAAAAAATATAAAAAAATTCAACTTAAAATCAATAATG
* *
10483628 AGATTATAAAATCATTTAAAGCAAGTAATAAGGCATTCGAAGGCATGAATGACTATAAATGGACT
577 AGATTATAAAAGCATTTAAAGCAAGTAATAAGGCATTCGAAGGCAAGAATGACTATAAATGGACT
* * *
10483693 TTTCTAATTAATGGATGGCTTTCA-CCTTACATTTCAT
642 TTTCTAATCAACGGA-GGCTTTCAGCCTCACATTTCAT
* * *
10483730 GAGGTAAACATTCAGTTATAACCT-TTCTTAACCAAAAATATAAAAAAATTCAACTTAAAATCAA
1 AAGGTAAACATTCAGTTATAACCTGTT-TTAACAAAAAATAT-AAAAATTTCAACTTAAAATCAA
* * **
10483794 TAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTCTGAAAAAATGAGTGACTATAAAT
64 TAATGA-AATATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAAT
* * * * * * ** * **
10483859 TGACTTTTCCTATTAATGGAGGGTTTTAGCCACACGTTTCCCAAGGTTAACATTCAATTATAATT
128 AGACTTTTCTTGTTAATGGATGGCTTTCGCTTCACGTTT-CCTAGGCAAACATTCAATTATAA-T
* ** *
10483924 CGTTTTAACAAAAACATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAA
191 CTTTTTAACAAAAATGTAAGAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAA
* * * * * * * *
10483989 GCGAGTAGTAAAGTTTTTGAAGGCAAGAGTGACTATGAATGGGCTTTTCT-TGTCAACGGAGGGT
256 GCGAGTAATAAGGCTTCTGAAGGCATGAGTGACTATAAATGGACTTTTCTAT-T-AATGGAGGGT
* * * * * *
10484053 TTTAGCCTTACGTTTCCTAAGGTATACATTCAATTATAACCTGTTTTCACAAAATAATGATAAAA
319 TTTAGCCTCACGTTTCCCAAGGTAAACATTCAATTATAACCTATCTTAACAAAA-AATG-TAAAA
* * * *
10484118 AT-TTCAACTTAAAATCAATAATTAGATGATAAAACCTTTTAAAGCGAGTAATAGGGCTTTCGAA
382 ATATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAA
*
10484182 GGCATGAGTGACTATAAATGGACTTTTTCTTGT
447 GACATGAGTGACTATAAATGGAC-TTTTCTTGT
10484215 TNNNNNNNNN
Statistics
Matches: 988, Mismatches: 161, Indels: 44
0.83 0.13 0.04
Matches are distributed among these distances:
681 1 0.00
682 7 0.01
683 141 0.14
684 219 0.22
685 561 0.57
686 22 0.02
687 36 0.04
688 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.32
Consensus pattern (678 bp):
AAGGTAAACATTCAGTTATAACCTGTTTTAACAAAAAATATAAAAATTTCAACTTAAAATCAATA
ATGAAATATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAATAGA
CTTTTCTTGTTAATGGATGGCTTTCGCTTCACGTTTCCTAGGCAAACATTCAATTATAATCTTTT
TAACAAAAATGTAAGAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAG
TAATAAGGCTTCTGAAGGCATGAGTGACTATAAATGGACTTTTCTATTAATGGAGGGTTTTAGCC
TCACGTTTCCCAAGGTAAACATTCAATTATAACCTATCTTAACAAAAAATGTAAAAATATTCAAC
TTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGACATGAGT
GACTATAAATGGACTTTTCTTGTCAACGGAGAGCTTTAGCCACACAGTTCCCGAGGCAAACATTC
AATTATAATCTGTTTCAACAAAAAATATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAA
AAGCATTTAAAGCAAGTAATAAGGCATTCGAAGGCAAGAATGACTATAAATGGACTTTTCTAATC
AACGGAGGCTTTCAGCCTCACATTTCAT
Found at i:10483835 original size:513 final size:514
Alignment explanation
Indices: 10482334--10484208 Score: 2502
Period size: 513 Copynumber: 3.6 Consensus size: 514
10482324 NNNNNNNNNN
* * * *
10482334 AGGGTTTTAACCTCACCGTTCCCCAAGGTAAACATTCAGTTATAATCTGTTTTAAACAAAAAATA
1 AGGGTTTTAGCCACA-CGTTTCCCAAGGTAAACATTCAATTATAATCTGTTTT-AACAAAAAAT-
*
10482399 GTAAAAATAATTCAACTTAAAATCAATAATGAGACTATAAAACCAATTAAAGCAAGTAATAAGGC
63 GTAAAAA-AATTCAACTTAAAATCAATAATGAGATTATAAAACCAATTAAAGCAAGTAATAAGGC
* *** * * *
10482464 TTTTGAAGGCATGAATGACTATAAATAAACTTTTCTTGTCAGTC-GATGGCTTTCGCTTCACGTT
127 TTTTGAAGGCAAGAATGACTATAAATGGGCTTTTCTTGTCA-ACGGAGGGCTTTAGCTTCACGTT
* * * *
10482528 TGCCT-AGGCAAACATTCAATTGTTATCTG-TTTCAACAACA-AATG-TAAGAAAATTCAACTTA
191 T-CCTAAGGCAAACATTCAATTATAACCTGTTTTC-ACAAAATAATGATAA-AAAATTCAACTTA
* *
10482589 AAATCAATAATGAGATTATAAAAGCATTTAAAGCGAGTAATAAGGCATTCGAAGGCATGAATGAC
253 AAATCAATAATGAGATGATAAAACCATTTAAAGCGAGTAATAAGGCATTCGAAGGCATGAATGAC
* * *
10482654 TATAAATGGACTTTTCTAATTAATGGATGACTTTCGCCTCACGTTTCACGAGGTAAACATTCAAT
318 TATAAATGGACTTTTCTAATTAATGGATGGCTTTCGCCTTACGTTTCATGAGGTAAACATTCAAT
*
10482719 TATAACCTTTCTTAACCGAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAAC
383 TATAACCTTTCTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAAC
* * *
10482784 CATTTTAAGCGAGTAATAAGGCTTTTGAAAAAATGAGTGACTATAAATTGACTTTTCCTGTTAAC
448 CATTTTAAGCGAGTAATAAGGCTTCTGAAAAAATGAGTGACTATAAATTGACTTTTCCTATTAAT
10482849 GG
513 GG
* * *
10482851 AGGGTTTTAGCCACACAG-TTCCCGAGGTTAACATTCAATTATAATCTGTTTTAACAAAAAATAT
1 AGGGTTTTAGCCACAC-GTTTCCCAAGGTAAACATTCAATTATAATCTGTTTTAACAAAAAATGT
* * * *
10482915 AAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAAGCATTTAAAGCGAGTAATAAGGTTTT
65 AAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCAATTAAAGCAAGTAATAAGGCTTT
* * * * * *
10482980 TGAAGGCAAGAGTGACTATGAATGGGGTTTTCTTATCAACGGAGGGTTTTAGCCTCACGTTTCCT
130 TGAAGGCAAGAATGACTATAAATGGGCTTTTCTTGTCAACGGAGGGCTTTAGCTTCACGTTTCCT
* * *
10483045 AAGGTATACATTCAATTATAACCTGTTTTCACAAAATAATGATAAAAATTTCAACTTAAAATCAA
195 AAGGCAAACATTCAATTATAACCTGTTTTCACAAAATAATGATAAAAAATTCAACTTAAAATCAA
* * * * * * *
10483110 TAATCAAATGATAAAACCTTTTAAAGCGAGTAATAAGGCTTTTGAAGGTATGAGTGACTATAAAT
260 TAATGAGATGATAAAACCATTTAAAGCGAGTAATAAGGCATTCGAAGGCATGAATGACTATAAAT
** * * * * * *
10483175 GGACTTTTCTTGTTAATGGATAGCTTTCGCTTTACGTTTCTTGAGGCAAACATTTAATTATAAAC
325 GGACTTTTCTAATTAATGGATGGCTTTCGCCTTACGTTTCATGAGGTAAACATTCAATTATAACC
* * * *
10483240 TTTCTTAATCAAAAATGTAAGAAAATTCAACTTGAAATCGATTATGAGATTATAAAACCATTTTA
390 TTTCTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTTA
* *** * * *
10483305 AGCGACTAATAAGGCTTCTGAAGGCATGGGTGACTATAAATGGACTTTTTCTATTAATGG
455 AGCGAGTAATAAGGCTTCTGAAAAAATGAGTGACTATAAATTGACTTTTCCTATTAATGG
* * * **
10483365 AGGGTTTTAGCCTCACGTTTCCCAAGGTAAACAGTCAATTATAATCTATGGTAACAAAAAATGTA
1 AGGGTTTTAGCCACACGTTTCCCAAGGTAAACATTCAATTATAATCTGTTTTAACAAAAAATGTA
* * *
10483430 AAAATATTCAACTTAAAATCAATAATGAGATTATAAAACCAATTAAAGTAAGTAATAAGGCTTTC
66 AAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCAATTAAAGCAAGTAATAAGGCTTTT
* * * * ** *
10483495 GAAGACATGAATGGCTATAAATGGGCTTTTCTTGTCAGTC-GATAGCTTTCGCTTCACGTTTGCC
131 GAAGGCAAGAATGACTATAAATGGGCTTTTCTTGTCA-ACGGAGGGCTTTAGCTTCACGTTT-CC
*
10483559 T-AGGCAAACATTCAATTATAATCTG-TTTCAACAAAA-AATG-TAAGAAAATTCAACTTAAAAT
194 TAAGGCAAACATTCAATTATAACCTGTTTTC-ACAAAATAATGATAA-AAAATTCAACTTAAAAT
* * * * *
10483620 TAATTATGAGATTATAAAATCATTTAAAGCAAGTAATAAGGCATTCGAAGGCATGAATGACTATA
257 CAATAATGAGATGATAAAACCATTTAAAGCGAGTAATAAGGCATTCGAAGGCATGAATGACTATA
* * *
10483685 AATGGACTTTTCTAATTAATGGATGGCTTTCACCTTACATTTCATGAGGTAAACATTCAGTTATA
322 AATGGACTTTTCTAATTAATGGATGGCTTTCGCCTTACGTTTCATGAGGTAAACATTCAATTATA
* *
10483750 ACCTTTCTTAACCAAAAATATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATT
387 ACCTTTCTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
*
10483815 TAAAGCGAGTAATAAGGCTTCTGAAAAAATGAGTGACTATAAATTGACTTTTCCTATTAATGG
452 TTAAGCGAGTAATAAGGCTTCTGAAAAAATGAGTGACTATAAATTGACTTTTCCTATTAATGG
*
10483878 AGGGTTTTAGCCACACGTTTCCCAAGGTTAACATTCAATTATAAT-TCGTTTTAACAAAAACA--
1 AGGGTTTTAGCCACACGTTTCCCAAGGTAAACATTCAATTATAATCT-GTTTTAACAAAAA-ATG
* * * * *
10483940 TAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAGTAAAGTTT
64 TAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCAATTAAAGCAAGTAATAAGGCTT
* * *
10484005 TTGAAGGCAAGAGTGACTATGAATGGGCTTTTCTTGTCAACGGAGGGTTTTAGCCTT-ACGTTTC
129 TTGAAGGCAAGAATGACTATAAATGGGCTTTTCTTGTCAACGGAGGGCTTTAG-CTTCACGTTTC
* * *
10484069 CTAAGGTATACATTCAATTATAACCTGTTTTCACAAAATAATGATAAAAATTTCAACTTAAAATC
193 CTAAGGCAAACATTCAATTATAACCTGTTTTCACAAAATAATGATAAAAAATTCAACTTAAAATC
* * * * *
10484134 AATAATTAGATGATAAAACCTTTTAAAGCGAGTAATAGGGCTTTCGAAGGCATGAGTGACTATAA
258 AATAATGAGATGATAAAACCATTTAAAGCGAGTAATAAGGCATTCGAAGGCATGAATGACTATAA
10484199 ATGGACTTTT
323 ATGGACTTTT
10484209 TCTTGTTNNN
Statistics
Matches: 1165, Mismatches: 174, Indels: 42
0.84 0.13 0.03
Matches are distributed among these distances:
511 4 0.00
512 139 0.12
513 517 0.44
514 443 0.38
515 17 0.01
516 31 0.03
517 14 0.01
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.32
Consensus pattern (514 bp):
AGGGTTTTAGCCACACGTTTCCCAAGGTAAACATTCAATTATAATCTGTTTTAACAAAAAATGTA
AAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCAATTAAAGCAAGTAATAAGGCTTTT
GAAGGCAAGAATGACTATAAATGGGCTTTTCTTGTCAACGGAGGGCTTTAGCTTCACGTTTCCTA
AGGCAAACATTCAATTATAACCTGTTTTCACAAAATAATGATAAAAAATTCAACTTAAAATCAAT
AATGAGATGATAAAACCATTTAAAGCGAGTAATAAGGCATTCGAAGGCATGAATGACTATAAATG
GACTTTTCTAATTAATGGATGGCTTTCGCCTTACGTTTCATGAGGTAAACATTCAATTATAACCT
TTCTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTTAA
GCGAGTAATAAGGCTTCTGAAAAAATGAGTGACTATAAATTGACTTTTCCTATTAATGG
Found at i:10485428 original size:22 final size:22
Alignment explanation
Indices: 10485400--10485447 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
10485390 ACGACCCAAG
*
10485400 GAAGAGAGGAAGCCACGGTGGT
1 GAAGAGAGGAAGACACGGTGGT
*
10485422 GAAGAGAGGAAGACATGGTGGT
1 GAAGAGAGGAAGACACGGTGGT
10485444 GAAG
1 GAAG
10485448 GGAGTGACGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.35, C:0.08, G:0.46, T:0.10
Consensus pattern (22 bp):
GAAGAGAGGAAGACACGGTGGT
Found at i:10485536 original size:28 final size:28
Alignment explanation
Indices: 10485503--10485622 Score: 144
Period size: 28 Copynumber: 4.5 Consensus size: 28
10485493 AGAAAAGAAG
** *
10485503 TAGAAAATAAAAATATGCATGGCCCAAA
1 TAGAAAATAAAAATGGGCATGACCCAAA
10485531 TAGAAAATAAAAATGGGCATGACCCAAA
1 TAGAAAATAAAAATGGGCATGACCCAAA
10485559 TAGAAAAT--AAATGGGCATGACCC-AA
1 TAGAAAATAAAAATGGGCATGACCCAAA
* * *
10485584 TAGAAAAT--AAGTGGGCATG-GCCTAA
1 TAGAAAATAAAAATGGGCATGACCCAAA
10485609 TAGAAAATAAAAAT
1 TAGAAAATAAAAAT
10485623 AAATAGATTT
Statistics
Matches: 83, Mismatches: 6, Indels: 7
0.86 0.06 0.07
Matches are distributed among these distances:
24 2 0.02
25 30 0.36
26 15 0.18
27 3 0.04
28 33 0.40
ACGTcount: A:0.52, C:0.12, G:0.18, T:0.17
Consensus pattern (28 bp):
TAGAAAATAAAAATGGGCATGACCCAAA
Found at i:10485591 original size:25 final size:26
Alignment explanation
Indices: 10485519--10485619 Score: 134
Period size: 25 Copynumber: 3.9 Consensus size: 26
10485509 ATAAAAATAT
*
10485519 GCATGGCCCAAATAGAAAATAAAAATGG
1 GCATGACCCAAATAGAAAAT--AAATGG
10485547 GCATGACCCAAATAGAAAATAAATGG
1 GCATGACCCAAATAGAAAATAAATGG
*
10485573 GCATGACCC-AATAGAAAATAAGTGG
1 GCATGACCCAAATAGAAAATAAATGG
* *
10485598 GCATG-GCCTAATAGAAAATAAA
1 GCATGACCCAAATAGAAAATAAA
10485620 AATAAATAGA
Statistics
Matches: 68, Mismatches: 4, Indels: 5
0.88 0.05 0.06
Matches are distributed among these distances:
24 2 0.03
25 32 0.47
26 15 0.22
28 19 0.28
ACGTcount: A:0.49, C:0.15, G:0.21, T:0.16
Consensus pattern (26 bp):
GCATGACCCAAATAGAAAATAAATGG
Found at i:10486863 original size:19 final size:19
Alignment explanation
Indices: 10486839--10486876 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
10486829 CTGCAAAACT
*
10486839 CTCAAATTATACTCCAATA
1 CTCAAATCATACTCCAATA
10486858 CTCAAATCATACTCCAATA
1 CTCAAATCATACTCCAATA
10486877 AGTTAAATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.29, G:0.00, T:0.29
Consensus pattern (19 bp):
CTCAAATCATACTCCAATA
Found at i:10489130 original size:34 final size:35
Alignment explanation
Indices: 10489092--10489165 Score: 82
Period size: 36 Copynumber: 2.1 Consensus size: 35
10489082 TTCTTTTTCT
*
10489092 ATTTTTTATCAATTT-ATATT-G-ATTATTTTTAAAA
1 ATTTTTAAT-AATTTAATATTAGAATT-TTTTTAAAA
*
10489126 ATTTTTAATTATTTAAATATTAGAATTTTTTTAAAA
1 ATTTTTAATAATTT-AATATTAGAATTTTTTTAAAA
10489162 ATTT
1 ATTT
10489166 CCTTAACACT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
33 4 0.12
34 8 0.24
35 5 0.15
36 14 0.41
37 3 0.09
ACGTcount: A:0.38, C:0.01, G:0.03, T:0.58
Consensus pattern (35 bp):
ATTTTTAATAATTTAATATTAGAATTTTTTTAAAA
Found at i:10489629 original size:14 final size:14
Alignment explanation
Indices: 10489610--10489643 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
10489600 ACTCAAAATT
*
10489610 AATTAATTAACTAC
1 AATTAATTAACTAA
10489624 AATTAATTAACTAA
1 AATTAATTAACTAA
10489638 AATTAA
1 AATTAA
10489644 ACCAACAAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (14 bp):
AATTAATTAACTAA
Found at i:10492337 original size:171 final size:170
Alignment explanation
Indices: 10492065--10493736 Score: 1443
Period size: 171 Copynumber: 9.8 Consensus size: 170
10492055 ATTATAATTC
* * * * *
10492065 GTTTTAAAGAAAAATGTAGAAAAATTCAACTTAAAATCAATAATAAGATTATAAAATCATTTAAA
1 GTTTTAACG-AAAATATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAA
* * * *
10492130 GTGAGTAATAAAGCTTTTGAAGACATGAGTGACTATAAATGGACTTTTCTTGTCAAT-GATTGGC
65 GCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGA-TGGC
* * *
10492194 TTTTGCTTCACGTTTCTCAAGGAAAACATTTATTTCTAGCCT
129 TTTTGCTTCAAGTTTCTCAAGGTAAACATTTATTTCTAACCT
*
10492236 -TTCCTAACCGAAAATATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAA
1 GTT-TTAA-CGAAAATATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAA
* * * * *
10492300 AGCGAGTAATAAGGCTTTCAAAGGCAT-AGCCGACTATAAATAGACTTTTCTTGCCATTGGATGG
64 AGCGAGTAATAAGGCTTTCGAAGGCATGAG-TGACTATAAATGGACTTTTCTTGTCAATGGATGG
* * * * * * * *
10492364 CTTTTTCTTGATGTTTCTCGAGGTAAACATTCAATTATAATCT
128 CTTTTGCTTCAAGTTTCTCAAGGTAAACATTTATTTCTAACCT
* * * * * * *
10492407 ATTTTTATGAAAA-AGGTAAAACAATTCAACTTAAAATTAGTAATGAGATTATAAAACAATTTAA
1 GTTTTAACGAAAATA--TAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAA
* ** * * * * *
10492471 CA-CAAGTAATAAGGCACTCGAAGGTATGGGCT-ACTATATATGAAAC-TTTCTTGTCAATTGAT
64 -AGCGAGTAATAAGGCTTTCGAAGGCATGAG-TGACTATAAATG-GACTTTTCTTGTCAATGGAT
* * * * *
10492533 GGCTTTTGCTTCAAGTTTCCCAAGGCAAATATTTAATTAC-AATCT
126 GGCTTTTGCTTCAAGTTTCTCAAGGTAAACATTT-ATTTCTAACCT
* * * * *
10492578 GTTTTAACAAAAAT-TCAAAAAAATACAACATAAAACCAATAATGAGATCATAAAACCATTTAAA
1 GTTTTAACGAAAATAT-AAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAA
* * * * * * *
10492642 GCGAGTAATAAGCCTTTTGAAGTCATGAGTGACTATAAATTGACTTTTCTTGTTAATAGATGTCT
65 GCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCT
* * ** *
10492707 TTCGCTTCATGTTTCTTGAGGCAAACATTTATTTCTAACCT
130 TTTGCTTCAAGTTTCTCAAGGTAAACATTTATTTCTAACCT
* *
10492748 -TTTTGAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAA
1 GTTTT-AA-CGAAAATATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAA
* * * * * * *
10492812 AGAGAGTAATAAGGATTTCGAAGGCATGGGTGACTATAAATGGTCTTTTCTTGTTAATGGGTCGC
64 AGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC
** * * * * * * *
10492877 TTTCACTT-AGAGTTTCCCTAGGTAAACACTCAATTATAAACT
129 TTTTGCTTCA-AGTTTCTCAAGGTAAACATTTATTTCTAACCT
* * * * * * *
10492919 GTTTTAATGAAAAAAGTAAAAAAATTCAACTTAAAATTAGTAATGAGATTACAATACAATTTAAC
1 GTTTTAACGAAAATA-TAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAA-
* ** * * * ** * *
10492984 A-CAAGTAATAAGGCACTCGAACGCATGAGTGACTATATATGAAAATTTCTTCTCAATTGATGGC
64 AGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC
* * *
10493048 TTTTGCTTCAAGTTTCTCAAGGCAAACATTTAATTAC-AATCT
129 TTTTGCTTCAAGTTTCTCAAGGTAAACATTT-ATTTCTAACCT
* * * * * * *
10493090 ATTTCAACCAAAAATGTGAAAAAATTCAACATAAAA-AAATAATGAGATTAT-AAACCATTTAAC
1 GTTTTAA-CGAAAATATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAA-
* * * * * * **
10493153 A-CGAGTAATGAGGCATTCGAAGGCCTGAGTGATTATAAATTGACTTTCCTTGTCAATCAATGGC
64 AGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC
* * * * * *
10493217 TTTTGCTTCATGTTTCCCGAGGTGAACATTTAATAC--ACTCT
129 TTTTGCTTCAAGTTTCTCAAGGTAAACATTTATTTCTAAC-CT
* * * * *
10493258 GTTTTAATC-AAAAAAGTAAAAAAAATCAACATGAAATCAATAATAAGATTATAAAACCATTTAA
1 GTTTTAA-CGAAAATA-TAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAA
** * * * * *
10493322 AATGAGTAATAAGGATTTCAAAGGCATGGGTGACTATAAATGGACTTTTCTCGTTAATGGATGGC
64 AGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC
* * * ** * *
10493387 TTTCGC-TCAGAGTTTCCCAAGGTCAACACTCAATTAC-AA-AT
129 TTTTGCTTCA-AGTTTCTCAAGGTAAACA-TTTATTTCTAACCT
* * *
10493428 AGTTTTAATGAAAAAAGTAAAAAAATTCAACTTAAAATCAATAACGAGATTATAAAACCATTTAA
1 -GTTTTAACGAAAATA-TAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAA
* * *
10493493 AGC-ACGTAATAAGCCTTTCGAAGGCATGAGTGACTACAAATAGACTTTTCTTGAT-AATGGATG
64 AGCGA-GTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTG-TCAATGGATG
* * * **
10493556 GCATTTGCTTCACGTTTCTCGAGACAAACATTTATTTCTAACCT
127 GCTTTTGCTTCAAGTTTCTCAAGGTAAACATTTATTTCTAACCT
* *
10493600 -TCTTTAATCGAAAATGTAAAAAAATTCAACTTCAAATCAATAATGAGATTATAAAACCATTTAA
1 GT-TTTAA-CGAAAATATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAA
* * **
10493664 AGCGAGTAATAAGCCTTTCGATGGCATGAGTGACTATAAATATA-TGTTTCTTGTCAATGGATGG
64 AGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACT-TTTCTTGTCAATGGATGG
*
10493728 CTTTCGCTT
128 CTTTTGCTT
10493737 AATGCTACTT
Statistics
Matches: 1196, Mismatches: 258, Indels: 94
0.77 0.17 0.06
Matches are distributed among these distances:
167 5 0.00
168 29 0.02
169 116 0.10
170 230 0.19
171 779 0.65
172 37 0.03
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.32
Consensus pattern (170 bp):
GTTTTAACGAAAATATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAG
CGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTT
TTGCTTCAAGTTTCTCAAGGTAAACATTTATTTCTAACCT
Found at i:10493071 original size:512 final size:512
Alignment explanation
Indices: 10492046--10493736 Score: 2022
Period size: 512 Copynumber: 3.3 Consensus size: 512
10492036 NNNNNNNNNN
* ** * * *
10492046 AAACATTTAATTATAAT-TCGTTTTAAAGAAAAATGTAGAAAAATTCAACTTAAAATCAATAATA
1 AAACATTTAATTACAATCT-GTTTTAACCAAAAATGTAAAAAAATTCAACATAAAATCAATAATG
* * * * *
10492110 AGATTATAAAATCATTTAAAGTGAGTAATAAAG-CTTTTGAAGACATGAGTGACTATAAATGGAC
65 AGATTATAAAACCATTTAAAGCGAGTAAT-AAGCCTTTCGAAGGCATGAGTGACTATAAATTGAC
* * * *
10492174 TTTTCTTGTCAAT-GATTGGCTTTTGCTTCACGTTTCTCAAGGAAAACATTTATTTCTAGCCTTT
129 TTTTCTTGTCAATAGA-TGGCTTTCGCTTCATGTTTCTCGAGGAAAACATTTATTTCTAACCTTT
* * * *
10492238 CCTAACCGAAAATATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGC
193 -TTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGA
* * ** * ** *
10492303 GAGTAATAAGGCTTTCAAAGGCATAGCCGACTATAAATAGACTTTTCTTGCCATTGGATGGCTTT
257 GAGTAATAAGGATTTCAAAGGCATGGGTGACTATAAATGGACTTTTCTTGTTAATGGATGGCTTT
** * * * * * * * *
10492368 TTCTT-GATGTTTCTCGAGGTAAACATTCAATTATAATCTATTTTTATGAAAAAGGTAAAACAAT
322 CACTTAGA-GTTTCCCAAGGTAAACACTCAATTATAAACTGTTTTAATGAAAAAAGTAAAAAAAT
*
10492432 TCAACTTAAAATTAGTAATGAGATTATAAAACAATTTAACACAAGTAATAAGGCACTCGAAGGTA
386 TCAACTTAAAATTAGTAATGAGATTATAAAACAATTTAACACAAGTAATAAGGCACTCGAAGGCA
* * * *
10492497 TGGGCT-ACTATATATGAAACTTTCTTGTCAATTGATGGCTTTTGCTTCAAGTTTCCCAAGGC
451 TGAG-TGACTATATATGAAAATTTCTTATCAATTGATGGCTTTTGCTTCAAGTTTCTCAAGGC
* * *
10492559 AAATATTTAATTACAATCTGTTTTAA-CAAAAAT-TCAAAAAAATACAACATAAAACCAATAATG
1 AAACATTTAATTACAATCTGTTTTAACCAAAAATGT-AAAAAAATTCAACATAAAATCAATAATG
* * *
10492622 AGATCATAAAACCATTTAAAGCGAGTAATAAGCCTTTTGAAGTCATGAGTGACTATAAATTGACT
65 AGATTATAAAACCATTTAAAGCGAGTAATAAGCCTTTCGAAGGCATGAGTGACTATAAATTGACT
* * * *
10492687 TTTCTTGTTAATAGATGTCTTTCGCTTCATGTTTCTTGAGGCAAACATTTATTTCTAACCTTTTT
130 TTTCTTGTCAATAGATGGCTTTCGCTTCATGTTTCTCGAGGAAAACATTTATTTCTAACCTTTTT
10492752 GAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGAGA
195 -AACCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGAGA
* * * *
10492817 GTAATAAGGATTTCGAAGGCATGGGTGACTATAAATGGTCTTTTCTTGTTAATGGGTCGCTTTCA
259 GTAATAAGGATTTCAAAGGCATGGGTGACTATAAATGGACTTTTCTTGTTAATGGATGGCTTTCA
*
10492882 CTTAGAGTTTCCCTAGGTAAACACTCAATTATAAACTGTTTTAATGAAAAAAGTAAAAAAATTCA
324 CTTAGAGTTTCCCAAGGTAAACACTCAATTATAAACTGTTTTAATGAAAAAAGTAAAAAAATTCA
* * *
10492947 ACTTAAAATTAGTAATGAGATTACAATACAATTTAACACAAGTAATAAGGCACTCGAACGCATGA
389 ACTTAAAATTAGTAATGAGATTATAAAACAATTTAACACAAGTAATAAGGCACTCGAAGGCATGA
*
10493012 GTGACTATATATGAAAATTTCTTCTCAATTGATGGCTTTTGCTTCAAGTTTCTCAAGGC
454 GTGACTATATATGAAAATTTCTTATCAATTGATGGCTTTTGCTTCAAGTTTCTCAAGGC
* * * *
10493071 AAACATTTAATTACAATCTATTTCAACCAAAAATGTGAAAAAATTCAACATAAAA-AAATAATGA
1 AAACATTTAATTACAATCTGTTTTAACCAAAAATGTAAAAAAATTCAACATAAAATCAATAATGA
* * * * *
10493135 GATTAT-AAACCATTTAACA-CGAGTAATGAGGCATTCGAAGGCCTGAGTGATTATAAATTGACT
66 GATTATAAAACCATTTAA-AGCGAGTAATAAGCCTTTCGAAGGCATGAGTGACTATAAATTGACT
* * * ** * *
10493198 TTCCTTGTCAATCA-ATGGCTTTTGCTTCATGTTTCCCGAGGTGAACATTTAATAC--ACTCTGT
130 TTTCTTGTCAAT-AGATGGCTTTCGCTTCATGTTTCTCGAGGAAAACATTTATTTCTAAC-CT-T
* * * * * *
10493260 TTTAATCAAAAAAGTAAAAAAAATCAACATGAAATCAATAATAAGATTATAAAACCATTTAAA-A
192 TTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGA
*
10493324 TGAGTAATAAGGATTTCAAAGGCATGGGTGACTATAAATGGACTTTTCTCGTTAATGGATGGCTT
257 -GAGTAATAAGGATTTCAAAGGCATGGGTGACTATAAATGGACTTTTCTTGTTAATGGATGGCTT
* * * *
10493389 TCGCTCAGAGTTTCCCAAGGTCAACACTCAATTACAAA-TAGTTTTAATGAAAAAAGTAAAAAAA
321 TCACTTAGAGTTTCCCAAGGTAAACACTCAATTATAAACT-GTTTTAATGAAAAAAGTAAAAAAA
* * * * * * **
10493453 TTCAACTTAAAATCAATAACGAGATTATAAAACCATTTAA-AGCACGTAATAAGCCTTTCGAAGG
385 TTCAACTTAAAATTAGTAATGAGATTATAAAACAATTTAACA-CAAGTAATAAGGCACTCGAAGG
* * ** * * * * *
10493517 CATGAGTGACTACAAAT-AGACTTTTCTTGAT-AATGGATGGCATTTGCTTCACGTTTCTCGAGA
449 CATGAGTGACTATATATGA-AAATTTCTT-ATCAATTGATGGCTTTTGCTTCAAGTTTCTCAAGG
10493580 C
512 C
* * * * * *
10493581 AAACATTT-ATTTCTAACCT-TCTTTAATCGAAAATGTAAAAAAATTCAACTTCAAATCAATAAT
1 AAACATTTAATTAC-AATCTGT-TTTAACCAAAAATGTAAAAAAATTCAACATAAAATCAATAAT
*
10493644 GAGATTATAAAACCATTTAAAGCGAGTAATAAGCCTTTCGATGGCATGAGTGACTATAAATAT-A
64 GAGATTATAAAACCATTTAAAGCGAGTAATAAGCCTTTCGAAGGCATGAGTGACTATAAAT-TGA
*
10493708 -TGTTTCTTGTCAATGGATGGCTTTCGCTT
128 CT-TTTCTTGTCAATAGATGGCTTTCGCTT
10493737 AATGCTACTT
Statistics
Matches: 1018, Mismatches: 134, Indels: 53
0.84 0.11 0.04
Matches are distributed among these distances:
509 11 0.01
510 313 0.31
511 118 0.12
512 523 0.51
513 51 0.05
514 2 0.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.32
Consensus pattern (512 bp):
AAACATTTAATTACAATCTGTTTTAACCAAAAATGTAAAAAAATTCAACATAAAATCAATAATGA
GATTATAAAACCATTTAAAGCGAGTAATAAGCCTTTCGAAGGCATGAGTGACTATAAATTGACTT
TTCTTGTCAATAGATGGCTTTCGCTTCATGTTTCTCGAGGAAAACATTTATTTCTAACCTTTTTA
ACCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGAGAGT
AATAAGGATTTCAAAGGCATGGGTGACTATAAATGGACTTTTCTTGTTAATGGATGGCTTTCACT
TAGAGTTTCCCAAGGTAAACACTCAATTATAAACTGTTTTAATGAAAAAAGTAAAAAAATTCAAC
TTAAAATTAGTAATGAGATTATAAAACAATTTAACACAAGTAATAAGGCACTCGAAGGCATGAGT
GACTATATATGAAAATTTCTTATCAATTGATGGCTTTTGCTTCAAGTTTCTCAAGGC
Found at i:10493621 original size:681 final size:674
Alignment explanation
Indices: 10492065--10493736 Score: 1812
Period size: 681 Copynumber: 2.4 Consensus size: 674
10492055 ATTATAATTC
* * *
10492065 GTTTTAAAGAAAAATGTAGAAAAATTCAACTTAAAATCAATAATAAGATTATAAAATCATTTAAA
1 GTTTTAAAGAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAA
* *
10492130 GTGAGTAATAAAGCTTTTGAAGACATGAGTGACTATAAATGGACTTTTCTTGTCAAT-GATTGGC
66 --GAGTAAT-AAGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGT-AATGGA-TGGC
* * * *
10492194 TTTTGCTTCACGTTTCTCAAGGAAAACATTTATTTCTAGCCTTTCCTAACCGAAAATATAAAAAA
126 -TTTGCTTCACGTTTCTCAA-GAAAACATTTATTTCTAACCTTT-TTAATCGAAAATGTAAAAAA
*
10492259 ATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGG
188 ATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGG
* ** * * * *
10492324 CAT-AGCCGACTATAAATAGACTTTTCTTGC-C-ATTGGATGGCTTTTTCTTGATGTTTCTCGAG
253 CATGAG-TGACTATAAATAGAAATTTCTT-CTCAATT-GATGGCTTTTGCTTCAAGTTTCTCAAG
* * ** ** * * *
10492386 GTAAACATTCAATTATAATCTATTTTTATGAAAAAGGTAAAACAATTCAACTTAAAATTAGTAAT
315 GCAAACATTCAATTACAATCTATTTCAACCAAAAAGGTAAAACAATTCAACATAAAATAAATAAT
* * *
10492451 GAGATTATAAAACAATTTAACACAAGTAATAAGGCACTCGAAGGTATGGGCTACTATATATGAAA
380 GAGATTATAAAACAATTTAACACAAGTAATAAGGCACTCGAAGGCATGAGCTACTATAAATG-AA
** *
10492516 CTTTCTTGTCAATTGATGGCTTTTGCTTCAAGTTTCCCAAGGCAAATATTTAATTACAATCTGTT
444 CTTTCTTGTCAATCAATGGCTTTTGCTTCAAGTTTCCCAAGGCAAACATTTAATTACAATCTGTT
* * * *
10492581 TTAACAAAAATTCAAAAAAATACAACATAAAACCAATAATGAGATCATAAAACCATTTAAAGCGA
509 TTAACAAAAAGTAAAAAAAATACAACATAAAACCAATAATAAGATCATAAAACCATTTAAAACGA
* ** * * * *
10492646 GTAATAAGCCTTTTGAAGTCATGAGTGACTATAAATTGACTTTTCTTGTTAATAGATGTCTTTCG
574 GTAATAAGCATTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTCGTTAATAGATGGCTTTCG
* *** ** * * *
10492711 CTTCATGTTTCTTGAGGCAAACATTTATTTCTAACC
639 CTTCAAGTTTCCCAAGGCAAACATCAATTACAAACA
* **
10492747 TTTTTGAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAA
1 GTTTT-AAAGAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTT-A
* * * * *
10492812 AGAGAGTAATAAGGATTTCGAAGGCATGGGTGACTATAAATGGTCTTTTCTTGTTAATGGGTCGC
64 A-AGAGTAATAA-GCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTG-TAATGGATGGC
* * * * * * * * * * *
10492877 TTTCACTT-AGAGTTTCCCTAGGTAAACACTCAATTATAAACTGTTTTAAT-GAAAAAAGTAAAA
126 TTT-GCTTCA-CGTTTCTC-AAGAAAACATTTATTTCTAACCT-TTTTAATCG-AAAATGTAAAA
* * * * * * **
10492940 AAATTCAACTTAAAATTAGTAATGAGATTACAATACAATTTAACA-CAAGTAATAAGGCACTCGA
186 AAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAA-AGCGAGTAATAAGGCTTTCGA
* *
10493004 ACGCATGAGTGACTATATAT-GAAAATTTCTTCTCAATTGATGGCTTTTGCTTCAAGTTTCTCAA
250 AGGCATGAGTGACTATAAATAG-AAATTTCTTCTCAATTGATGGCTTTTGCTTCAAGTTTCTCAA
* *
10493068 GGCAAACATTTAATTACAATCTATTTCAACCAAAAATGTGAAAA-AATTCAACATAAAA-AAATA
314 GGCAAACATTCAATTACAATCTATTTCAACCAAAAAGGT-AAAACAATTCAACATAAAATAAATA
* * * * * *
10493131 ATGAGATTAT-AAACCATTTAACACGAGTAATGAGGCATTCGAAGGCCTGAG-TGATTATAAATT
378 ATGAGATTATAAAACAATTTAACACAAGTAATAAGGCACTCGAAGGCATGAGCT-ACTATAAA-T
* * ** *
10493194 G-ACTTTCCTTGTCAATCAATGGCTTTTGCTTCATGTTTCCCGAGGTGAACATTTAA-TACACTC
441 GAACTTT-CTTGTCAATCAATGGCTTTTGCTTCAAGTTTCCCAAGGCAAACATTTAATTACAATC
* * *
10493257 TGTTTTAATCAAAAAAGTAAAAAAAAT-CAACATGAAATCAATAATAAGATTATAAAACCATTTA
505 TGTTTTAA-C-AAAAAGTAAAAAAAATACAACATAAAACCAATAATAAGATCATAAAACCATTTA
* * * *
10493321 AAATGAGTAATAAGGATTTCAAAGGCATGGGTGACTATAAATGGACTTTTCTCGTTAATGGATGG
568 AAACGAGTAATAAGCATTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTCGTTAATAGATGG
*
10493386 CTTTCGC-TCAGAGTTTCCCAAGGTC-AACACTCAATTACAAATA
633 CTTTCGCTTCA-AGTTTCCCAAGG-CAAACA-TCAATTACAAACA
* * *
10493429 GTTTTAATGAAAAAAGTAAAAAAATTCAACTTAAAATCAATAACGAGATTATAAAACCATTTAAA
1 GTTTTAAAGAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAA
* *
10493494 GCACGTAATAAGCCTTTCGAAGGCATGAGTGACTACAAATAGACTTTTCTTGATAATGGATGGCA
66 G-A-GTAATAAG-CTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTG-TAATGGATGGC-
*
10493559 TTTGCTTCACGTTTCTCGAGACAAACATTTATTTCTAACCTTCTTTAATCGAAAATGTAAAAAAA
126 TTTGCTTCACGTTTCTCAAGA-AAACATTTATTTCTAACCTT-TTTAATCGAAAATGTAAAAAAA
* * *
10493624 TTCAACTTCAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGCCTTTCGATGGC
189 TTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGC
* ** * * *
10493689 ATGAGTGACTATAAATATATGTTTCTTGTCAATGGATGGCTTTCGCTT
254 ATGAGTGACTATAAATAGAAATTTCTTCTCAATTGATGGCTTTTGCTT
10493737 AATGCTACTT
Statistics
Matches: 809, Mismatches: 146, Indels: 71
0.79 0.14 0.07
Matches are distributed among these distances:
679 2 0.00
680 30 0.04
681 424 0.52
682 59 0.07
683 276 0.34
684 17 0.02
685 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.32
Consensus pattern (674 bp):
GTTTTAAAGAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAA
GAGTAATAAGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTAATGGATGGCTTTGC
TTCACGTTTCTCAAGAAAACATTTATTTCTAACCTTTTTAATCGAAAATGTAAAAAAATTCAACT
TAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTG
ACTATAAATAGAAATTTCTTCTCAATTGATGGCTTTTGCTTCAAGTTTCTCAAGGCAAACATTCA
ATTACAATCTATTTCAACCAAAAAGGTAAAACAATTCAACATAAAATAAATAATGAGATTATAAA
ACAATTTAACACAAGTAATAAGGCACTCGAAGGCATGAGCTACTATAAATGAACTTTCTTGTCAA
TCAATGGCTTTTGCTTCAAGTTTCCCAAGGCAAACATTTAATTACAATCTGTTTTAACAAAAAGT
AAAAAAAATACAACATAAAACCAATAATAAGATCATAAAACCATTTAAAACGAGTAATAAGCATT
TCAAAGGCATGAGTGACTATAAATGGACTTTTCTCGTTAATAGATGGCTTTCGCTTCAAGTTTCC
CAAGGCAAACATCAATTACAAACA
Found at i:10493751 original size:31 final size:31
Alignment explanation
Indices: 10493713--10493771 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
10493703 ATATATGTTT
10493713 CTTGTCAATGGATGGCTTTCGCTTAATGCTA
1 CTTGTCAATGGATGGCTTTCGCTTAATGCTA
10493744 CTTGTCAATGGATGGCTTTCGCTTAATG
1 CTTGTCAATGGATGGCTTTCGCTTAATG
10493772 TTTCTTGAGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.19, C:0.19, G:0.24, T:0.39
Consensus pattern (31 bp):
CTTGTCAATGGATGGCTTTCGCTTAATGCTA
Found at i:10495738 original size:2 final size:2
Alignment explanation
Indices: 10495731--10495760 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
10495721 NNNNNNNATA
10495731 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10495761 CAATATTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10496381 original size:22 final size:22
Alignment explanation
Indices: 10496339--10496382 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
10496329 ACTTATGTCA
*
10496339 AACACTTTCTAAGTTTTCATGT
1 AACACTTTCTAAGTTTACATGT
*
10496361 AACACTATTCTCA-TTTACATGT
1 AACACT-TTCTAAGTTTACATGT
10496383 TGCCACCAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.30, C:0.20, G:0.07, T:0.43
Consensus pattern (22 bp):
AACACTTTCTAAGTTTACATGT
Found at i:10496928 original size:19 final size:19
Alignment explanation
Indices: 10496901--10496946 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
10496891 GGGAGCAAGA
10496901 AAAAAAAGGAAATGAAAA-G
1 AAAAAAAGGAAA-GAAAATG
*
10496920 AAAACAAGGAAAGAAAATG
1 AAAAAAAGGAAAGAAAATG
10496939 AAAGAAAA
1 AAA-AAAA
10496947 CTAACTTTCC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 5 0.22
19 15 0.65
20 3 0.13
ACGTcount: A:0.74, C:0.02, G:0.20, T:0.04
Consensus pattern (19 bp):
AAAAAAAGGAAAGAAAATG
Found at i:10500149 original size:170 final size:171
Alignment explanation
Indices: 10499973--10500299 Score: 399
Period size: 170 Copynumber: 1.9 Consensus size: 171
10499963 CCGAATTTGG
* * *
10499973 TGTTTGCATTGAG-AAACATGAAGCACAAGCCATCCATTCACAAGAAAAT-TCCATCTATAATCT
1 TGTTTGCATT-AGTAAACATGAAGCAAAAGCCATCCATTCAC-AGAAAATGTCAATCTATAATCA
* * * * *
10500036 CTAATGCCTTTGAAAGCATTGTTACTTACTTTAAGTGGTTTTATAACTTTAGAAATGA-TTTTAA
64 CTAATGCCGTCGAAAGCATAGTTACTTACTTTAAATGGTTTTAAAACTTTAGAAATGATTTTTAA
** *
10500100 ATTAAATTTTTTTCATTTTTTCTTAAAACTTATAATAATTAGT
129 ATTAAATTTTACTCATTTTTGCTTAAAACTTATAATAATTAGT
* * ** * * *
10500143 TGTTTGCATTAGTAAGCATGAAGCAAAAGCCATCCATTGACAGGCAATGTCAATTTATAGTGACT
1 TGTTTGCATTAGTAAACATGAAGCAAAAGCCATCCATTCACAGAAAATGTCAATCTATAATCACT
* * * **
10500208 TATGCCGTCGAAAGCCTAGTTACTTACTTTAAATGGTTTTAAAACTTTATAAATGATTTTTGTAT
66 AATGCCGTCGAAAGCATAGTTACTTACTTTAAATGGTTTTAAAACTTTAGAAATGATTTTTAAAT
*
10500273 TGAATTTTACTCATTTTTGCTTAAAAC
131 TAAATTTTACTCATTTTTGCTTAAAAC
10500300 AAATTGTAAT
Statistics
Matches: 130, Mismatches: 24, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
169 7 0.05
170 94 0.72
171 29 0.22
ACGTcount: A:0.33, C:0.14, G:0.13, T:0.39
Consensus pattern (171 bp):
TGTTTGCATTAGTAAACATGAAGCAAAAGCCATCCATTCACAGAAAATGTCAATCTATAATCACT
AATGCCGTCGAAAGCATAGTTACTTACTTTAAATGGTTTTAAAACTTTAGAAATGATTTTTAAAT
TAAATTTTACTCATTTTTGCTTAAAACTTATAATAATTAGT
Found at i:10500590 original size:170 final size:167
Alignment explanation
Indices: 10500405--10500726 Score: 387
Period size: 167 Copynumber: 1.9 Consensus size: 167
10500395 TACTCACTTG
* * ** * *
10500405 AAATAGTTTTATAATCTTATAAATGAGCTTAAATTAATTTTTTTTTCTTCATTTCTGGTTAAAAC
1 AAATAGTTCTATAATCTTATAAATGAGCTTAAATCAA--AATTGTT-TTCATTTCTGATTAAAAC
* * *
10500470 AAATCATGATTTGATGTTTGCA-TCATAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAAGT
63 AAATCATAATTTGATGCTTGCATTCAGAAACATGAAGCAAAAGCCATCCATTGACAAG-AAAAGT
*
10500534 CAATTTA-TAGTCACTTATGACTTCGAAAACCTAATCTCTTT
127 CAATTTATTA-TCACTCATGACTTCGAAAACCTAATCTCTTT
* * ** **
10500575 AAATTGTTCTATAATCTTATAATTGATTTTAAATCAAAATTGTTTTCATTTCTGATTAAAACAGG
1 AAATAGTTCTATAATCTTATAAATGAGCTTAAATCAAAATTGTTTTCATTTCTGATTAAAACAAA
** * * *
10500640 TCATAATTTGATGCTTGCATTGGGAAACATGAAGCGAAAGCCATTCATTGACAAGAAAAGTCCAT
66 TCATAATTTGATGCTTGCATTCAGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCAAT
*
10500705 TTATTATCACTCATGCCTTCGA
131 TTATTATCACTCATGACTTCGA
10500727 CAGGCTTATG
Statistics
Matches: 128, Mismatches: 22, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
167 61 0.48
168 36 0.28
170 31 0.24
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (167 bp):
AAATAGTTCTATAATCTTATAAATGAGCTTAAATCAAAATTGTTTTCATTTCTGATTAAAACAAA
TCATAATTTGATGCTTGCATTCAGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCAAT
TTATTATCACTCATGACTTCGAAAACCTAATCTCTTT
Found at i:10500768 original size:341 final size:340
Alignment explanation
Indices: 10499331--10500999 Score: 1100
Period size: 341 Copynumber: 4.9 Consensus size: 340
10499321 NNNNNNNNCT
* * *
10499331 ATCCATTGACAA-AAAAATCCATTTA-TAGTCACTCATGCTTTCAACAGGCTTATTACTCACTTT
1 ATCCATTGACAAGAAAAGTCCATTTATTA-TCACTCATGCCTTCGACAGGCTTATTACTCACTTT
* * * **
10499394 ATGTGATTTTATAACTTTATAAATGATTGTAAATTAATTTTTTTTATTCATTTTTAGTTGAAATG
65 AAGTGGTTTTATAACTTTATAAATGATTTTAAATTAATTTTTTTT-TTCA-TTTTAGTT-AAAAC
* * * * ** ** * *
10499459 GAAT-ATAATTTGTTGTTTGCATTAGGAGACGCGAAGTGAAACCCATTCATTGACAAGAAAAGTC
127 AAATCATAATTTGATGTTTGCATCA-GAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTC
* * * * * * * * *
10499523 CATTTATAGACACTTAGGCCTCCTAAAGCATTA-TTACTCT-CTTTAAATGGTTTTAAAATCTTA
191 AATTTATAGTCACTTATGCCTTCGAAAAC-CTAGATACT-TACTTTAAATGGTTTTATAATCTTA
* * ** * * *
10499586 TAAATGGTTTTGAATTGAATTTTGTTTTCATTTTAGGCTCAAACAGATCATAATTTGTTGTTTGC
254 TAAATGATTTT-AAAT-AAAATTGTTTTCATTTTTGGCTAAAACAGATCATAATTTGATGTTTGC
* * *
10499651 CTTGAAAAACATGAAGCTAAAGCC
317 ATTGAGAAACATGAAGCGAAAGCC
* * * * * * * *
10499675 ATCCATTGAGAAGAAAAGTCCACTTATAATCACTCATGCTTTCAACAAGCTTGTTACTTGA-TTT
1 ATCCATTGACAAGAAAAGTCCATTTATTATCACTCATGCCTTCGACAGGCTTATTAC-TCACTTT
* * ** *
10499739 AAGTGGTTTTATTACTTTATAAATGATTTTTAATTAA-ACTTTTTTTCATTTTTGTT---A-AAA
65 AAGTGGTTTTATAACTTTATAAATGATTTTAAATTAATTTTTTTTTTCATTTTAGTTAAAACAAA
* * * **
10499799 -C---A--TGATGTTTCCATCAAGAAACGTGAGGCAAAA-CCTATCCATTGACAAG-AAAGTTTA
130 TCATAATTTGATGTTTGCATC-AGAAACATGAAGCAAAAGCC-ATCCATTGACAAGAAAAGTCAA
* ** * * *
10499856 TTTATAGTCACTCATGCCTTC-AAAAGTGTAGGTACTTGCTTTAAATGGTTTTATAATCTTACAA
193 TTTATAGTCACTTATGCCTTCGAAAA-CCTAGATACTTACTTTAAATGGTTTTATAATCTTATAA
* * * *** * * ** *
10499920 ATGACTTTCAGTTGCATTGTTTTCATTTTTGGCTAAATCATATCCGAATTTGGTGTTTGCATTGA
257 ATGATTTTAAATAAAATTGTTTTCATTTTTGGCTAAAACAGATCATAATTTGATGTTTGCATTGA
10499985 GAAACATGAAGC-ACAAGCC
322 GAAACATGAAGCGA-AAGCC
* * * * * * * * * *
10500004 ATCCATTCACAAGAAAATTCCATCTATAATCTCTAATGCCTTTGA-AAGCATTGTTACTTACTTT
1 ATCCATTGACAAGAAAAGTCCATTTATTATCACTCATGCCTTCGACAGGC-TTATTACTCACTTT
* * ** **
10500068 AAGTGGTTTTATAACTTTAGAAATGATTTTAAATTAA--ATTTTTTTCATTTTTTCTTAAAACTT
65 AAGTGGTTTTATAACTTTATAAATGATTTTAAATTAATTTTTTTTTTCA-TTTTAGTTAAAACAA
* * * * * * * *
10500131 ATAATAATTAGTTGTTTGCATTAGTAAGCATGAAGCAAAAGCCATCCATTGACAGGCAATGTCAA
129 ATCATAATTTGATGTTTGCATCAG-AAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCAA
* * * * *
10500196 TTTATAGTGACTTATGCCGTCGAAAGCCTAGTTACTTACTTTAAATGGTTTTA-AAACTTTATAA
193 TTTATAGTCACTTATGCCTTCGAAAACCTAGATACTTACTTTAAATGGTTTTATAATC-TTATAA
** ** * * ** * *
10500260 ATGATTTTTGTATTGAATT-TTACTCATTTTT-GCTTAAAACAAATTGTAATTTTAT-TTGTCTC
257 ATGA-TTTTAAATAAAATTGTT-TTCATTTTTGGC-TAAAACAGATCATAATTTGATGTT-T-GC
* * *
10500322 A-TCAGGAAACGTGAAGTGAAAG-C
317 ATTGA-GAAACATGAAGCGAAAGCC
* * * * * * ** *
10500345 A---A-TGACAAGGAAAGCCCATTTA-TAGTCACTCATACCTTTGAAAGCCTTGCTACTCACTTG
1 ATCCATTGACAAGAAAAGTCCATTTATTA-TCACTCATGCCTTCGACAGGCTTATTACTCACTTT
* * ** *
10500405 AAATAGTTTTATAA-TCTTATAAATGAGCTTAAATTAATTTTTTTTTCTTCATTTCTGGTTAAAA
65 AAGTGGTTTTATAACT-TTATAAATGATTTTAAATTAA-TTTTTTTT-TTCATTT-TAGTTAAAA
* *
10500469 CAAATCATGATTTGATGTTTGCATCATAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAAGT
126 CAAATCATAATTTGATGTTTGCATCAGAAACATGAAGCAAAAGCCATCCATTGACAAG-AAAAGT
* * *
10500534 CAATTTATAGTCACTTATGACTTCGAAAACCTA-AT-C-T-CTTTAAATTGTTCTATAATCTTAT
190 CAATTTATAGTCACTTATGCCTTCGAAAACCTAGATACTTACTTTAAATGGTTTTATAATCTTAT
* * ** * *
10500595 AATTGATTTTAAATCAAAATTGTTTTCATTTCTGATTAAAACAGGTCATAATTTGATGCTTGCAT
255 AAATGATTTTAAAT-AAAATTGTTTTCATTTTTGGCTAAAACAGATCATAATTTGATGTTTGCAT
*
10500660 TGGGAAACATGAAGCGAAAGCC
319 TGAGAAACATGAAGCGAAAGCC
* * *
10500682 ATTCATTGACAAGAAAAGTCCATTTATTATCACTCATGCCTTCGACAGGCTTATGACTCGCTTTA
1 ATCCATTGACAAGAAAAGTCCATTTATTATCACTCATGCCTTCGACAGGCTTATTACTCACTTTA
* ** * * * * * * *
10500747 AGTGGTTTTTTAACTTTATAAACAATTGTAAATTGATTTTGTTTAT-ATTTTTAGTCAAAATAGA
66 AGTGGTTTTATAACTTTATAAATGATTTTAAATTAATTTTTTTTTTCA-TTTTAGTTAAAACAAA
* * *
10500811 TCATAATTTGCTGTTTGCATCGAGAAACATGAAGCAAAAACCATCCATTGACAA-ATAAAGTCTA
130 TCATAATTTGATGTTTGCATC-AGAAACATGAAGCAAAAGCCATCCATTGACAAGA-AAAGTCAA
* * * * * *** * * * * ** * *
10500875 TCTATAATCACTCATTCCATCGAAAGTGTTGTTACTTGCATTAAATTATTTTAAAATCTCATAAA
193 TTTATAGTCACTTATGCCTTCGAAAACCTAGATACTTACTTTAAATGGTTTTATAATCTTATAAA
* * * * * * * * *
10500940 TGATTTGAAATTGAATTTTTTTTCATTTTAGGTTCAAACATATCATAATTTGTTGTTTGC
258 TGATTTTAAA-TAAAATTGTTTTCATTTTTGGCTAAAACAGATCATAATTTGATGTTTGC
10501000 CTTGGNNNNN
Statistics
Matches: 1026, Mismatches: 234, Indels: 132
0.74 0.17 0.09
Matches are distributed among these distances:
328 16 0.02
329 143 0.14
330 8 0.01
331 59 0.06
332 34 0.03
333 2 0.00
334 1 0.00
336 25 0.02
337 126 0.12
338 68 0.07
339 72 0.07
340 110 0.11
341 173 0.17
342 92 0.09
343 6 0.01
344 16 0.02
345 72 0.07
346 3 0.00
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.39
Consensus pattern (340 bp):
ATCCATTGACAAGAAAAGTCCATTTATTATCACTCATGCCTTCGACAGGCTTATTACTCACTTTA
AGTGGTTTTATAACTTTATAAATGATTTTAAATTAATTTTTTTTTTCATTTTAGTTAAAACAAAT
CATAATTTGATGTTTGCATCAGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCAATTT
ATAGTCACTTATGCCTTCGAAAACCTAGATACTTACTTTAAATGGTTTTATAATCTTATAAATGA
TTTTAAATAAAATTGTTTTCATTTTTGGCTAAAACAGATCATAATTTGATGTTTGCATTGAGAAA
CATGAAGCGAAAGCC
Found at i:10503158 original size:170 final size:170
Alignment explanation
Indices: 10502883--10504553 Score: 1523
Period size: 170 Copynumber: 9.9 Consensus size: 170
10502873 NNNNNNNNAG
* * * * * *
10502883 GAAACGTGACGCGAAAGCCATC-CATTGACAGGAAAAGTCCTTTTATAGTCGCTCATGCCTTC-G
1 GAAACGTGAAGCGAAAGCCATCTGATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAG
* * *
10502946 AAAGCC---TTA-----TTTAAATGTTTTTATAGTCTCATTATTGATTTTAAGCTGAATTTTCTT
66 -AAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTT-TT
* * * *
10503003 ACATTATTGGTCAAACAGATTATAATTGAATGTTTACCTTGG
129 ACATTTTTGGTAAAACAGATTATAATTGAATGTTTACCTCGA
* * * * * * * *
10503045 GAAACGTGAAGCTAAAACCCTCTGTTTG-TAGGAAAAGTCCATTTATTGTCACTCATACCTTCAA
1 GAAACGTGAAGCGAAAGCCATCTGATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAG
*
10503109 AAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGATGAATTGTTTTA
66 AAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATT-TTTTA
* * * *
10503174 CATGTTTTTGTTAAAACAGATTATTATTGAATTTTTATCTCGA
130 CA--TTTTTGGTAAAACAGATTATAATTGAATGTTTACCTCGA
* * * * * * * * * *
10503217 GAAACGTGAGGCTAAAACCCTC-AATTGACAGGAAAAGACCATTTATAGTCACTCATTCCTTTAG
1 GAAACGTGAAGCGAAAGCCATCTGATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAG
** * * * *
10503281 AAGCCTTATTGGTCGATTCAAATGG--TTATAATCTCATAATTGATTTTAAGTTAAATTTTTTTA
66 AAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAA-TTTTTTA
** ** ** * *
10503344 CATTTTTTATTATGA-ATTTTATAATT-ATATGTTTGA-GTAGA
130 CA-TTTTTGGTAAAACAGATTATAATTGA-ATGTTT-ACCTCGA
* * ** *
10503385 GAAACGTGAAGCGAAAGCCAT-TCG-TTGACAA-AAAAATCTGTTTATAGTCACTCATGCCTTTA
1 GAAACGTGAAGCGAAAGCCATCT-GATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCA
* * * *
10503447 GAAGCCTTATTACTCGCTTTAAATAGTTTTACAGTCTCATTATTGATTTTAAATTGAATTTTTTT
65 GAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAA-TTTTTT
* *
10503512 ACATTTTTGGTTAAAACAAATTATAATTGAAAGTTTACCTC-A
129 ACATTTTTGG-TAAAACAGATTATAATTGAATGTTTACCTCGA
* * * ** * *
10503554 GGAAATGTGAAGCGAAAGCCTTCT-AATGGGAAGGAAAGTTCATTTATAGTCACTCATGCCTGT-
1 -GAAACGTGAAGCGAAAGCCATCTGATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCT-TC
* * * *
10503617 AAAAACCTTATTACTCGCTTTAAATGGTTTTATAATCTGATTATTGATTTTAAGCTGAATTTTTT
64 AGAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAA-TTTTT
* * *
10503682 TACATTTTTGGTTAAAATAGATAATAATTGAATGTTTGCCTCGA
128 TACATTTTTGG-TAAAACAGATTATAATTGAATGTTTACCTCGA
* * * * *
10503726 GAAACGTGACA-CGAAAGCCATC-CATTGACAAGAAAAGTCC-TTTTTAGTCGCTCATGCCTTCG
1 GAAACGTGA-AGCGAAAGCCATCTGATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCA
* **
10503788 GAAGCCTTATTCCTTACTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTG
65 GAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTT-
* * * *
10503853 GA-ATTTTTGATCAAACAGATGATAATTGAATGTTTACCTCGG
129 -ACATTTTTGGTAAAACAGATTATAATTGAATGTTTACCTCGA
* * * * * *
10503895 GAAACGT-ATAGCTTAAA-CTC-TCTG-TTGGT-CGAAAAAGTCCATTTATTGTCATTCATGTCT
1 GAAACGTGA-AGC-GAAAGC-CATCTGATTGATAAG-AAAAGTCCATTTATAGTCACTCATGCCT
* * *
10503955 TCAAAAGCCTTATTACTCCCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTGGAATTAT
62 TCAGAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATT-T
* * * *
10504020 TTTACTTTTTTTTGTTAAAACAGATTATTATTGAATGTTTATCTCGA
126 TTTAC--ATTTTTGGTAAAACAGATTATAATTGAATGTTTACCTCGA
* * * * * * * * * * *
10504067 GAACCGTGAGGCTAAAACCCTC-AATTGACAAGAAAAGACCGTTTATAGTCACTCATTCCTTTAG
1 GAAACGTGAAGCGAAAGCCATCTGATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAG
* * *
10504131 AAGCCTTATTACTCGCTTAAAATGG--TTATAATCTCATAATTGATTTGAAGTTGAATTTTTTTA
66 AAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAA-TTTTTTA
** ** * * * *
10504194 CATTTTTGGTTATGA-ATTTTATAATT-ATGTGTTTGCATCAA
130 CATTTTTGG-TAAAACAGATTATAATTGA-ATGTTTACCTCGA
* * *
10504235 GAAACGTGAAGCGAAAGCCAT-TCG-TTGGTTAGAAAAGTCCGTTTATAGTCACTCATGCCTTCA
1 GAAACGTGAAGCGAAAGCCATCT-GATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCA
* * * *
10504298 GAAGCCTTATTGCTCGCTTTAAAAGGTTTGATAGTCTCATTATTGATTTTAAGTTGAATTTTCTT
65 GAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTT-TT
* * * * *
10504363 ACATTTTTAGTTAAAAAAGATTATAAATGAATGTTTGCCTCGG
129 ACATTTTT-GGTAAAACAGATTATAATTGAATGTTTACCTCGA
* *
10504406 GAAACATGAAGCGAAAGCCATC-GATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGG
1 GAAACGTGAAGCGAAAGCCATCTGATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAG
**
10504470 AAGCCTTATTACTCGCTTTAAATACTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTAC
66 AAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTAC
10504535 ATTTTTGGTTAAAACAGAT
131 ATTTTTGG-TAAAACAGAT
10504554 NNNNNNNNNN
Statistics
Matches: 1222, Mismatches: 222, Indels: 122
0.78 0.14 0.08
Matches are distributed among these distances:
162 52 0.04
163 3 0.00
165 3 0.00
167 49 0.04
168 141 0.12
169 115 0.09
170 359 0.29
171 297 0.24
172 201 0.16
173 2 0.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.39
Consensus pattern (170 bp):
GAAACGTGAAGCGAAAGCCATCTGATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAG
AAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTAC
ATTTTTGGTAAAACAGATTATAATTGAATGTTTACCTCGA
Found at i:10508644 original size:23 final size:25
Alignment explanation
Indices: 10508615--10508670 Score: 66
Period size: 23 Copynumber: 2.4 Consensus size: 25
10508605 GGAGATAAAT
10508615 AATAAATATAA-AAA-AGAAAAAAA
1 AATAAATATAATAAATAGAAAAAAA
* *
10508638 AATAAATA-AATAAATAGTAAAAAT
1 AATAAATATAATAAATAGAAAAAAA
10508662 AAT-AATATA
1 AATAAATATA
10508671 GGGGTAGCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
22 2 0.07
23 15 0.54
24 11 0.39
ACGTcount: A:0.75, C:0.00, G:0.04, T:0.21
Consensus pattern (25 bp):
AATAAATATAATAAATAGAAAAAAA
Found at i:10509157 original size:13 final size:11
Alignment explanation
Indices: 10509133--10509195 Score: 51
Period size: 11 Copynumber: 5.6 Consensus size: 11
10509123 TTTTAATTTT
10509133 AAATAAATAAA
1 AAATAAATAAA
10509144 AAATATAATGAAA
1 AAATA-AAT-AAA
*
10509157 AGATAAA-AAA
1 AAATAAATAAA
*
10509167 ATAT-AATAATA
1 AAATAAATAA-A
10509178 AAA-AAATAATA
1 AAATAAATAA-A
10509189 AAATAAA
1 AAATAAA
10509196 AATAAACTTC
Statistics
Matches: 43, Mismatches: 3, Indels: 11
0.75 0.05 0.19
Matches are distributed among these distances:
9 2 0.05
10 8 0.19
11 18 0.42
12 8 0.19
13 7 0.16
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (11 bp):
AAATAAATAAA
Found at i:10509162 original size:24 final size:25
Alignment explanation
Indices: 10509133--10509200 Score: 70
Period size: 24 Copynumber: 2.8 Consensus size: 25
10509123 TTTTAATTTT
*
10509133 AAATAAATAAAAAAT-ATAATGAAA
1 AAATAAATAAAAAATAATAATAAAA
* *
10509157 AGATAAA-AAAATATAATAATAAAA
1 AAATAAATAAAAAATAATAATAAAA
*
10509181 AAAT-AATAAAATAAAAATAA
1 AAATAAATAAAA-AATAATAA
10509201 ACTTCAAAAG
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
23 8 0.23
24 21 0.60
25 6 0.17
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (25 bp):
AAATAAATAAAAAATAATAATAAAA
Found at i:10509180 original size:16 final size:16
Alignment explanation
Indices: 10509137--10509197 Score: 70
Period size: 16 Copynumber: 3.6 Consensus size: 16
10509127 AATTTTAAAT
10509137 AAATAAAAAATATAATGAA
1 AAATAAAAAA-ATAAT--A
10509156 AAGATAAAAAAAT-ATA
1 AA-ATAAAAAAATAATA
10509172 ATAATAAAAAAATAATA
1 A-AATAAAAAAATAATA
10509189 AAATAAAAA
1 AAATAAAAA
10509198 TAAACTTCAA
Statistics
Matches: 39, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
16 20 0.51
17 5 0.13
18 2 0.05
19 4 0.10
20 8 0.21
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (16 bp):
AAATAAAAAAATAATA
Found at i:10509186 original size:14 final size:13
Alignment explanation
Indices: 10509159--10509200 Score: 57
Period size: 14 Copynumber: 3.1 Consensus size: 13
10509149 TAATGAAAAG
*
10509159 ATAAAAAAATATA
1 ATAAAAAAAAATA
10509172 ATAATAAAAAAATA
1 ATAA-AAAAAAATA
10509186 ATAAAATAAAAATA
1 ATAAAA-AAAAATA
10509200 A
1 A
10509201 ACTTCAAAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 6 0.23
14 20 0.77
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (13 bp):
ATAAAAAAAAATA
Found at i:10518156 original size:35 final size:35
Alignment explanation
Indices: 10518110--10518188 Score: 122
Period size: 35 Copynumber: 2.3 Consensus size: 35
10518100 AACTTTAACT
10518110 GCTGATTTTGAAGGCTGAAAGGTGCAATTTTGGTG
1 GCTGATTTTGAAGGCTGAAAGGTGCAATTTTGGTG
* * *
10518145 GCTGATTTTGAAGGTTGAAAGGTGCGATTTTGGTT
1 GCTGATTTTGAAGGCTGAAAGGTGCAATTTTGGTG
*
10518180 GCTAATTTT
1 GCTGATTTT
10518189 TGTAGCTTTG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 40 1.00
ACGTcount: A:0.22, C:0.08, G:0.32, T:0.39
Consensus pattern (35 bp):
GCTGATTTTGAAGGCTGAAAGGTGCAATTTTGGTG
Found at i:10518259 original size:33 final size:32
Alignment explanation
Indices: 10518216--10518278 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 32
10518206 ATTTTTTGAG
* *
10518216 GGAGAATAGAGTAGCTTAGCTGCTGATTTTAA
1 GGAGAATAGAGCAGCTTAGCTACTGATTTTAA
*
10518248 GGAGAAATAGAGCAGCTTGGCTACTGATTTT
1 GGAG-AATAGAGCAGCTTAGCTACTGATTTT
10518279 GATGTGGATA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 4 0.15
33 23 0.85
ACGTcount: A:0.30, C:0.11, G:0.29, T:0.30
Consensus pattern (32 bp):
GGAGAATAGAGCAGCTTAGCTACTGATTTTAA
Found at i:10518544 original size:25 final size:25
Alignment explanation
Indices: 10518497--10518553 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
10518487 ATATGCATAT
*
10518497 AAATGGACATGGCCCAATAAGAAA-
1 AAATGGGCATGGCCCAATAAGAAAG
10518521 AGAATGGGCATGGCCCAA-ATAGAAAG
1 A-AATGGGCATGGCCCAATA-AGAAAG
10518547 AAATGGG
1 AAATGGG
10518554 AAAAGCCCAT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
24 2 0.07
25 26 0.90
26 1 0.03
ACGTcount: A:0.46, C:0.14, G:0.28, T:0.12
Consensus pattern (25 bp):
AAATGGGCATGGCCCAATAAGAAAG
Found at i:10522754 original size:13 final size:13
Alignment explanation
Indices: 10522738--10522767 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
10522728 TATTATTTAT
10522738 TTTTATCAAGTAA
1 TTTTATCAAGTAA
10522751 TTTTATCAAGTAA
1 TTTTATCAAGTAA
10522764 TTTT
1 TTTT
10522768 TTTTGTATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.53
Consensus pattern (13 bp):
TTTTATCAAGTAA
Found at i:10523085 original size:10 final size:10
Alignment explanation
Indices: 10523070--10523097 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
10523060 CTTAACATAA
10523070 TATATTTATT
1 TATATTTATT
10523080 TATATTTATT
1 TATATTTATT
10523090 TATATTTA
1 TATATTTA
10523098 CTTTTTATCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (10 bp):
TATATTTATT
Found at i:10524044 original size:41 final size:43
Alignment explanation
Indices: 10523964--10524075 Score: 104
Period size: 41 Copynumber: 2.7 Consensus size: 43
10523954 NNNNNNNNNN
* * *
10523964 GTGTGGGAGTGCACATGAGTTGATGATGACCCAATTATGTGCG
1 GTGTGGGAGTGCACATGAGCTAATGATGACCCAACTATGTGCG
* * * *
10524007 GTGT-GGAGTGCAC-TGAGCTAATGATGACCTAGCTATGTTCAA
1 GTGTGGGAGTGCACATGAGCTAATGATGACCCAACTATGTGC-G
* * *
10524049 GTG-GGGAATGCACATGAGTTGATGATG
1 GTGTGGGAGTGCACATGAGCTAATGATG
10524076 GTGGGATGGT
Statistics
Matches: 56, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
41 21 0.38
42 20 0.36
43 15 0.27
ACGTcount: A:0.25, C:0.13, G:0.34, T:0.28
Consensus pattern (43 bp):
GTGTGGGAGTGCACATGAGCTAATGATGACCCAACTATGTGCG
Found at i:10525701 original size:30 final size:28
Alignment explanation
Indices: 10525667--10525728 Score: 70
Period size: 28 Copynumber: 2.1 Consensus size: 28
10525657 TTTTTGAAAT
* *
10525667 TTACACTTTTGCCCCCGTAAAAGTCAAAAA
1 TTACA-TTTTGCCCCC-AAAAACTCAAAAA
* *
10525697 TTACATTTTGGCCCCAAAAACTGAAAAA
1 TTACATTTTGCCCCCAAAAACTCAAAAA
10525725 TTAC
1 TTAC
10525729 CCATAGACAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 14 0.50
29 9 0.32
30 5 0.18
ACGTcount: A:0.39, C:0.24, G:0.10, T:0.27
Consensus pattern (28 bp):
TTACATTTTGCCCCCAAAAACTCAAAAA
Found at i:10526532 original size:19 final size:19
Alignment explanation
Indices: 10526508--10526545 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
10526498 CTGCCAAAAC
* *
10526508 CTCAAATTATACTTCAATA
1 CTCAAATCATACTCCAATA
10526527 CTCAAATCATACTCCAATA
1 CTCAAATCATACTCCAATA
10526546 AGTCAAATGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.42, C:0.26, G:0.00, T:0.32
Consensus pattern (19 bp):
CTCAAATCATACTCCAATA
Found at i:10527833 original size:172 final size:171
Alignment explanation
Indices: 10526947--10528317 Score: 1449
Period size: 171 Copynumber: 8.0 Consensus size: 171
10526937 NNNNNNNNNN
* *
10526947 AAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCC
1 AAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCT
* * *
10527012 CACT-AGATGGA-C-TTCGCTTCACGTTTCCTT--AGGAAAACATTCAATTATAATTTGTTTTAA
66 CAATGA-AT--ATCTTTCGCTTCATGTTT--TTCAAGGTAAACATTCAATTATAATTTGTTTTAA
* * * * *
10527072 CCAAAAACGCAAAAGAATTCAACTTCAAATCGATTATGAGATTATA
126 CCAAAAAGGAAAAAAAATTCAACTTAAAATCAATTATGAGATTATA
* *
10527118 AAATCATTTAAAGCGAGTAATAAAGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCT
1 AAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCT
* * * * * ** * **
10527183 TAAAGAATATCCTTCACTTCACG-TTTGAAGAGGTAAATATTCAATTGCAATTTGTTTTAGA-CA
66 CAATGAATATCTTTCGCTTCATGTTTTTCA-AGGTAAACATTCAATTATAATTTGTTTTA-ACCA
10527246 AAATAGGAAAAAAAAGTTCAACTTAAAATCAATTATGAGATTATA
129 AAA-AGGAAAAAAAA-TTCAACTTAAAATCAATTATGAGATTATA
* * *
10527291 AAACTATTGAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCT
1 AAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCT
* * * * *
10527356 CAATGAATATCTTTCGCTTCATG-TTTCCTAAGGCAAATATTCAATTATGATTTCTTTTAACCAA
66 CAATGAATATCTTTCGCTTCATGTTTTTC-AAGGTAAACATTCAATTATAATTTGTTTTAACCAA
** *
10527420 AAAGTTAAAATAATTCAACTTAAAATCAATTATGAGATTATA
130 AAAGGAAAAAAAATTCAACTTAAAATCAATTATGAGATTATA
* * * * *
10527462 TAACCTTTTAAAGCTAGTAATAAGGCTTTCG-AGGGATGAGTGACTATAAATGGACTATTTC-TC
1 AAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACT-TTTCTTC
* * ** * * **
10527525 GCCAATGGATGGCTTTCG-TCTCATGTTTCCTGAA-GTAAACATTCAATTATAATCCGTTTTAAC
65 -TCAATGAATATCTTTCGCT-TCATGTTT-TTCAAGGTAAACATTCAATTATAATTTGTTTTAAC
* * * * *
10527588 CAAAAAGG-TAAAATATTCAACTTAAAAGCAATTATGAAACTATA
127 CAAAAAGGAAAAAAAATTCAACTTAAAATCAATTATGAGATTATA
* * * * *
10527632 AAACCATTTAAAGCAAGTAATAAAGCTTTCGAAGGTATAAGTGACTATAAATGAATTTTTCTTCT
1 AAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCT
* * * * *
10527697 CAATGAATATCTTTCGTTTTATGTTTTTCGAGGTAAACACTCAATTATAATTTGTTGTAACCAAA
66 CAATGAATATCTTTCGCTTCATGTTTTTCAAGGTAAACATTCAATTATAATTTGTTTTAACCAAA
* *
10527762 AAGGCAAAAAAAATTCAACTTAAAATCAATTACGAGATTATG
131 AAGG-AAAAAAAATTCAACTTAAAATCAATTATGAGATTATA
* * * * *
10527804 AAACCATTTAAAGCGAGTAATAAAGCTTTCAAAGGAATGAGTGACTATAAATGAACTTTTTTTGT
1 AAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCT
** * * * **
10527869 CAAT-AGATGGCTTTCGCTTCGTGTTTCTCCAGGTAAACATTCAATTATAATTTGTTTTAACCTG
66 CAATGA-ATATCTTTCGCTTCATGTTTTTCAAGGTAAACATTCAATTATAATTTGTTTTAACCAA
* *
10527933 AAAGGAAAAACAAATTCAACATAAAATCAATTCTGAGATTATA
130 AAAGGAAAAA-AAATTCAACTTAAAATCAATTATGAGATTATA
* * * * *
10527976 CAACCATTTAAAGCGAATAATAAGGCTTTTGAAGGCATGCGTGACTATAAATGAACTTTTCTTCC
1 AAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCT
* * ** * * * * * * * * * *
10528041 CAAAGGATGGCTTTTGCTTCACGTTTCTCAAGGGAAATAATCGATTGTAATCTGTTTTATCCAAA
66 CAATGAATATCTTTCGCTTCATGTTTTTCAAGGTAAACATTCAATTATAATTTGTTTTAACCAAA
* *
10528106 AA-AAGAAAAAAATTCAACTTAAAATCATTTATGAGATTATA
131 AAGGA-AAAAAAATTCAACTTAAAATCAATTATGAGATTATA
* * * * ** * *
10528147 AAATCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAAGCGACTACGAATGAAGTTTTCTTTT
1 AAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCT
* * * **
10528212 AAATAAATATCTTTCGCTTCATGTTTTTCAAGGTAAACATTCAATTATAATCTGTTTTAATTAAA
66 CAATGAATATCTTTCGCTTCATGTTTTTCAAGGTAAACATTCAATTATAATTTGTTTTAACCAAA
* *
10528277 AATGTAAAAACAATTCAACTTAAAATCAATTATGAGATTAT
131 AA-GGAAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
10528318 NNNNNNNNNN
Statistics
Matches: 997, Mismatches: 175, Indels: 55
0.81 0.14 0.04
Matches are distributed among these distances:
168 1 0.00
169 3 0.00
170 143 0.14
171 374 0.38
172 337 0.34
173 138 0.14
174 1 0.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.33
Consensus pattern (171 bp):
AAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCT
CAATGAATATCTTTCGCTTCATGTTTTTCAAGGTAAACATTCAATTATAATTTGTTTTAACCAAA
AAGGAAAAAAAATTCAACTTAAAATCAATTATGAGATTATA
Found at i:10528257 original size:685 final size:685
Alignment explanation
Indices: 10526947--10528311 Score: 1622
Period size: 685 Copynumber: 2.0 Consensus size: 685
10526937 NNNNNNNNNN
** * *
10526947 AAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCC
1 AAACCATTTAAAGCAAGTAATAAAGCTTTCGAAGGCATAAGTGACTATAAATGAACTTTTCTTCC
* * *
10527012 CACTAGATGGACTTCGCTTCACGTTTCCTTAGGAAAACATTCAATTATAATTTGTTTTAACCAAA
66 CAATAGAT-GACTTCGCTTCACGTTT-CTTAGGAAAACACTCAATTATAATTTGTTGTAACCAAA
* * * * *
10527077 AACGCAAAAGAATTCAACTTCAAATCGATTATGAGATTATAAAATCATTTAAAGCGAGTAATAAA
129 AACGCAAAAAAATTCAACTTAAAATCAATTACGAGATTATAAAACCATTTAAAGCGAGTAATAAA
* * * *
10527142 GCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTTAAAGAATATCCTTCACTTCACGT
194 GCTTTCAAAGGAATGAGTGACTATAAATGAACTTTTCTTCTCAAAGAATAGCCTTCACTTCACGT
* * * * *
10527207 TTGAAGAGGTAAATATTCAATTGCAATTTGTTTTAGACAAAATAGGAAAAAAAAGTTCAACTTAA
259 TTCAACAGGTAAACATTCAATTACAATTTGTTTTAGACAAAATAGGAAAAAAAAGTTCAACATAA
* * *
10527272 AATCAATTATGAGATTATAAAACTATTGAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACT
324 AATCAATTATGAGATTATAAAACCATTGAAAGCGAATAATAAGGCTTTCGAAGGCATGAGTGACT
* * * * *
10527337 ATAAATGAACTTTTCTTCTCAATGAATATCTTTCGCTTCATGTTTCCTAAGGCAAATATTCAATT
389 ATAAATGAACTTTTCTTCCCAAAGAATAGCTTTCGCTTCACGTTTCCTAAGGCAAATAATCAATT
* * *** * *
10527402 ATGATTTCTTTTAACCAAAAAGTTAAAATAATTCAACTTAAAATCAATTATGAGATTATATAACC
454 ATAATCTCTTTTAACCAAAAAAAGAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACC
* * * * * * * * *
10527467 TTTTAAAGCTAGTAATAAGGCTTTCGAGGGATGAGTGACTATAAATGGACTATTTCTCGCCAATG
519 ATTTAAAGCGAGTAATAAGGCTTTCGAGGCATAAGCGACTACAAATGAACTATTTCTCGCAAATA
* * *
10527532 GATGGCTTTCGTCTCATGTTTCCTGAAGTAAACATTCAATTATAATCCGTTTTAACCAAAAAGGT
584 AATAGCTTTCGTCTCATGTTTCCTCAAGTAAACATTCAATTATAATCCGTTTTAACCAAAAAGGT
*
10527597 -AAAA-TATTCAACTTAAAAGCAATTATGAAACTATA
649 AAAAACAATTCAACTTAAAAGCAATTATGAAACTATA
* * *
10527632 AAACCATTTAAAGCAAGTAATAAAGCTTTCGAAGGTATAAGTGACTATAAATGAATTTTTCTTCT
1 AAACCATTTAAAGCAAGTAATAAAGCTTTCGAAGGCATAAGTGACTATAAATGAACTTTTCTTCC
* * * *
10527697 CAAT-GAAT-ATCTTTCGTTTTATGTTT-TTCGAGGTAAACACTCAATTATAATTTGTTGTAACC
66 CAATAG-ATGA-C-TTCGCTTCACGTTTCTT--AGGAAAACACTCAATTATAATTTGTTGTAACC
* *
10527759 AAAAAGGCAAAAAAAATTCAACTTAAAATCAATTACGAGATTATGAAACCATTTAAAGCGAGTAA
126 AAAAACGC-AAAAAAATTCAACTTAAAATCAATTACGAGATTATAAAACCATTTAAAGCGAGTAA
* * * * *
10527824 TAAAGCTTTCAAAGGAATGAGTGACTATAAATGAACTTTTTTTGTCAATAG-ATGGCTTTCGCTT
190 TAAAGCTTTCAAAGGAATGAGTGACTATAAATGAACTTTTCTTCTCAA-AGAATAGCCTTCACTT
** ** * **
10527888 CGTGTTTCTCCAGGTAAACATTCAATTATAATTTGTTTTA-ACCTGAA-AGGAAAAACAAA-TTC
254 CACGTTTCAACAGGTAAACATTCAATTACAATTTGTTTTAGA-CAAAATAGGAAAAA-AAAGTTC
* * * *
10527950 AACATAAAATCAATTCTGAGATTATACAACCATTTAAAGCGAATAATAAGGCTTTTGAAGGCATG
317 AACATAAAATCAATTATGAGATTATAAAACCATTGAAAGCGAATAATAAGGCTTTCGAAGGCATG
* * * * *
10528015 CGTGACTATAAATGAACTTTTCTTCCCAAAGGATGGCTTTTGCTTCACGTTT-CTCAAGGGAAAT
382 AGTGACTATAAATGAACTTTTCTTCCCAAAGAATAGCTTTCGCTTCACGTTTCCT-AAGGCAAAT
* * * * *
10528079 AATCGATTGTAATCTGTTTTATCCAAAAAAAGAAAAAAATTCAACTTAAAATCATTTATGAGATT
446 AATCAATTATAATCTCTTTTAACCAAAAAAAGAAAAAAATTCAACTTAAAATCAATTATGAGATT
* * * *
10528144 ATAAAATCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAAGCGACTACGAATGAAGT-TTTC
511 ATAAAACCATTTAAAGCGAGTAATAAGGCTTTCG-AGGCATAAGCGACTACAAATGAACTATTTC
*** * * *
10528208 TTTTAAATAAATATCTTTCG-CTTCATGTTT-TTCAAGGTAAACATTCAATTATAATCTGTTTTA
575 TCGCAAATAAATAGCTTTCGTC-TCATGTTTCCTCAA-GTAAACATTCAATTATAATCCGTTTTA
** * *
10528271 ATTAAAAATGTAAAAACAATTCAACTTAAAATCAATTATGA
638 ACCAAAAAGGTAAAAACAATTCAACTTAAAAGCAATTATGA
10528312 GATTATNNNN
Statistics
Matches: 567, Mismatches: 98, Indels: 28
0.82 0.14 0.04
Matches are distributed among these distances:
683 3 0.01
684 8 0.01
685 371 0.65
686 161 0.28
687 24 0.04
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.33
Consensus pattern (685 bp):
AAACCATTTAAAGCAAGTAATAAAGCTTTCGAAGGCATAAGTGACTATAAATGAACTTTTCTTCC
CAATAGATGACTTCGCTTCACGTTTCTTAGGAAAACACTCAATTATAATTTGTTGTAACCAAAAA
CGCAAAAAAATTCAACTTAAAATCAATTACGAGATTATAAAACCATTTAAAGCGAGTAATAAAGC
TTTCAAAGGAATGAGTGACTATAAATGAACTTTTCTTCTCAAAGAATAGCCTTCACTTCACGTTT
CAACAGGTAAACATTCAATTACAATTTGTTTTAGACAAAATAGGAAAAAAAAGTTCAACATAAAA
TCAATTATGAGATTATAAAACCATTGAAAGCGAATAATAAGGCTTTCGAAGGCATGAGTGACTAT
AAATGAACTTTTCTTCCCAAAGAATAGCTTTCGCTTCACGTTTCCTAAGGCAAATAATCAATTAT
AATCTCTTTTAACCAAAAAAAGAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCAT
TTAAAGCGAGTAATAAGGCTTTCGAGGCATAAGCGACTACAAATGAACTATTTCTCGCAAATAAA
TAGCTTTCGTCTCATGTTTCCTCAAGTAAACATTCAATTATAATCCGTTTTAACCAAAAAGGTAA
AAACAATTCAACTTAAAAGCAATTATGAAACTATA
Found at i:10534534 original size:169 final size:168
Alignment explanation
Indices: 10534107--10535389 Score: 1050
Period size: 169 Copynumber: 7.6 Consensus size: 168
10534097 NNNNNNNNNN
** * * * * * * *
10534107 TTTTTTCATTTCTATTTAAAACGGATCATAACTGGATGTTTGCATAGGAAACGTGAAGAAAAAAC
1 TTTTTTCATTTCTGGTTAAAACAGATCATAATTGAATGTTCGCATTGGAAACGTGAAGCAAAAGC
** * * * * * *
10534172 CATTGATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCTACGAAAACC-TAGTTTCTCGCTT
66 CATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTC-AAAGCCTTA-TTACTCACTT
*
10534236 TAAGTAGTTTTCTAACTTTATAAATGATTTTAAATTGAAT
129 TAAGTAGTTTTATAACTTTATAAATGATTTTAAATTGAAT
* * * *
10534276 TTTTTTACATTTCTGGTTAAGACTGATCATAATTGAATGTTCACATTAGGAAATGTGAAGCGAAA
1 TTTTTT-CATTTCTGGTTAAAACAGATCATAATTGAATGTTCGCATT-GGAAACGTGAAGC-AAA
* * * *
10534341 A-CCATCCATTGATAAGAAAAGTCTATTTATAGCCACTCATGCCTTCAAAGGCCTTATTACACGC
63 AGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCAAA-GCCTTATTACTCAC
* * *
10534405 TTTAAATAGTTTTATAACTTTATAAATGATTTTGAACT-AAT
127 TTTAAGTAGTTTTATAACTTTATAAATGATTTTAAATTGAAT
*
10534446 TTTTTTCATTTCTGGTTAAAATAGATCATAATTGAATGTTCGCATTGAGAAACGTGAAGCAAAAG
1 TTTTTTCATTTCTGGTTAAAACAGATCATAATTGAATGTTCGCATTG-GAAACGTGAAGCAAAAG
* * * * * *
10534511 CTATCCATTGGCAAGAAAAGTCTATTTATAGCCACTCATGCCTTCGAAGGCCTAATTACACACTT
65 CCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTC-AAAGCCTTATTACTCACTT
* * *
10534576 TAAATAGTTTTACAACTTTATAAATGATTTTAAATT-TAT
129 TAAGTAGTTTTATAACTTTATAAATGATTTTAAATTGAAT
* * * ** **
10534615 TTTCTTT-ATTTCTAGTTAAAACATATCGTAATTGAATACTCGC-TTCGGAAGTGTGAAGCAAAA
1 TTT-TTTCATTTCTGGTTAAAACAGATCATAATTGAATGTTCGCATT-GGAAACGTGAAGCAAAA
* * * * * * * * * *
10534678 GCTATCTATTCACAAGAAAAGTCTATTTACAGTCACTTATGCCTTTGAATGCCTTGTCACTCATT
64 GCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCC-TTCAAAGCCTTATTACTCACT
* ** *
10534743 TTAAGTAGTTTTATAACTTTATAAATCAAGTTATATTGAATT
128 TTAAGTAGTTTTATAACTTTATAAATGATTTTAAATTGAA-T
* * * * ** *
10534785 TTTTTTACATTTCTAGTTAAAATAGATCATAATTGAATGTTTGCATTGGTATATATGAAGCGAAA
1 TTTTTT-CATTTCTGGTTAAAACAGATCATAATTGAATGTTCGCATTGG-AAACGTGAAGCAAAA
** * * * * *
10534850 GTTATCCATAGATAAGAAAAGTCCATTTATAGTCGCTCATG---T---A--C----T--T-GCTT
64 GCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCAAAGCCTTATTACTCACTT
* * * * * *
10534900 TAAATCGTTTTATAACTTTATAAATGACTTTCAACTAAAT
129 TAAGTAGTTTTATAACTTTATAAATGATTTTAAATTGAAT
* ** * * * * * * * *
10534940 TTTTTTCATTTCTGGTCAAAGTAAATCCTAATTGGATGTTTGCATCAGGAAACATGTAGCGAAAG
1 TTTTTTCATTTCTGGTTAAAACAGATCATAATTGAATGTTCGCAT-TGGAAACGTGAAGCAAAAG
* * * * * *
10535005 CCACCCATTGACAAGAAAAGTATTTTTATAGTCACTCATGCCTTCAAATGCCTTGTCACTCATTT
65 CCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCAAA-GCCTTATTACTCACTT
* * * *
10535070 TATGTGGTTTTATAAATTTATAAAATGATTTTGAATTGAATT
129 TAAGTAGTTTTATAACTTTAT-AAATGATTTTAAATTGAA-T
* * * * **
10535112 TTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTT-TCATTGGAAAACATGAAGTGAAAG
1 TTTTTTCATTTCTGGTTAAAACAGATCATAATTGAATGTTCGCATTGG-AAACGTGAAGCAAAAG
* * * * * *
10535176 CCATCCATTAACAAGAAAAAT-TAATTTATAGTCGCTTATGCCTTCGAAAGTC-TAGTTGCTCAC
65 CCATCCATTGACAAGAAAAGTCT-ATTTATAGTCACTCATGCCTTC-AAAGCCTTA-TTACTCAC
* * *
10535239 TTTAAGTTGTTTT-TAACTTTAAAAACGATTTTAAATTGAAT
127 TTTAAGTAGTTTTATAACTTTATAAATGATTTTAAATTGAAT
* ** **
10535280 TTTTTTACATTTCTGGTTAAAACAGATCATAATTAAATGTTCGCATTGGGAATTGTGAAGTGAAA
1 TTTTTT-CATTTCTGGTTAAAACAGATCATAATTGAATGTTCGCATT-GGAAACGTGAAGCAAAA
* * * *
10535345 GCCATCTATTGACAAGAAAGGTCCATTTATAGTCGCTCATGCCTT
64 GCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTT
10535390 TAANNNNNNN
Statistics
Matches: 902, Mismatches: 168, Indels: 87
0.78 0.15 0.08
Matches are distributed among these distances:
154 77 0.09
155 9 0.01
156 32 0.04
157 2 0.00
160 1 0.00
163 2 0.00
168 109 0.12
169 232 0.26
170 136 0.15
171 213 0.24
172 89 0.10
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (168 bp):
TTTTTTCATTTCTGGTTAAAACAGATCATAATTGAATGTTCGCATTGGAAACGTGAAGCAAAAGC
CATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCAAAGCCTTATTACTCACTTTA
AGTAGTTTTATAACTTTATAAATGATTTTAAATTGAAT
Found at i:10534798 original size:340 final size:339
Alignment explanation
Indices: 10534107--10535389 Score: 1189
Period size: 340 Copynumber: 3.8 Consensus size: 339
10534097 NNNNNNNNNN
* * * * * * * *
10534107 TTTTTTCATTTCTATTTAAAACGGATCATAACTGGATGTTTGCATAGG-AAACGTGAAGAAAAAA
1 TTTTTTCATTTCTAGTTAAAACAGATCATAATTGAATGTTTGCATTGGAAAACATGAAGCAAAAG
** * * * *
10534171 CCATTGATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCTACGAAAACCTAGTTTCTCGCTT
66 CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTAG-TTCTCACTT
* *
10534236 TAAGTAGTTTTCTAACTTTATAAATGATTTTAAATTGAATTTTTTTACATTTCTGGTTAAGAC-T
130 TAAATAGTTTTC-AACTTTATAAATGATTTTAAATTGAATTTTTTT-CATTTCTGGTTAAAACAT
* * *
10534300 GATCATAATTGAATGTTCACATTAGGAAATGTGAAGCGAAAA-CCATCCATTGATAAGAAAAGTC
193 -ATCATAATTGAATGTTCGCATTCGGAAATGTGAAGC-AAAAGCCATCCATTGACAAGAAAAGTC
* * * * * ** *
10534364 TATTTATAGCCACTCATGCCTTCAAAGGCCTTATTACACGCTTTAAATAGTTTTATAACTTTATA
256 TATTTATAGTCACTCATGCCTTCAAATGCCTTGTCACTCATTTTAAGTAGTTTTATAACTTTATA
*
10534429 AATGATTTTGAACT-AA-T
321 AATGATTTTGAATTGAATT
* * * *
10534446 TTTTTTCATTTCTGGTTAAAATAGATCATAATTGAATGTTCGCATT-GAGAAACGTGAAGCAAAA
1 TTTTTTCATTTCTAGTTAAAACAGATCATAATTGAATGTTTGCATTGGA-AAACATGAAGCAAAA
* * * * * * *
10534510 GCTATCCATTGGCAAGAAAAGTCTATTTATAGCCACTCATGCCTTCGAAGGCCTAATTACACACT
65 GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTAGTT-CTCACT
* *
10534575 TTAAATAGTTTTACAACTTTATAAATGATTTTAAATT-TATTTTCTTT-ATTTCTAGTTAAAACA
129 TTAAATAGTTTT-CAACTTTATAAATGATTTTAAATTGAATTTT-TTTCATTTCTGGTTAAAACA
* ** * * * *
10534638 TATCGTAATTGAATACTCGC-TTCGGAAGTGTGAAGCAAAAGCTATCTATTCACAAGAAAAGTCT
192 TATCATAATTGAATGTTCGCATTCGGAAATGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCT
* * **
10534702 ATTTACAGTCACTTATGCCTTTGAATGCCTTGTCACTCATTTTAAGTAGTTTTATAACTTTATAA
257 ATTTATAGTCACTCATGCCTTCAAATGCCTTGTCACTCATTTTAAGTAGTTTTATAACTTTATAA
* **
10534767 ATCAAGTT-ATATTGAATT
322 ATGATTTTGA-ATTGAATT
* * * * *
10534785 TTTTTTACATTTCTAGTTAAAATAGATCATAATTGAATGTTTGCATTGGTATATATGAAGCGAAA
1 TTTTTT-CATTTCTAGTTAAAACAGATCATAATTGAATGTTTGCATTGGAAAACATGAAGCAAAA
** * * * *
10534850 GTTATCCATAGATAAGAAAAGTCCATTTATAGTCGCTCATG---T----A--C----T-T-GCTT
65 GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTAGTTCTCACTT
* * * * * * * ** *
10534900 TAAATCGTTTTATAACTTTATAAATGACTTTCAACTAAATTTTTTTCATTTCTGGTCAAAGTAAA
130 TAAATAGTTTT-CAACTTTATAAATGATTTTAAATTGAATTTTTTTCATTTCTGGTTAAAACATA
* * * ** * * * * *
10534965 TCCTAATTGGATGTTTGCA-TCAGGAAACATGTAGCGAAAGCCACCCATTGACAAGAAAAGTATT
194 TCATAATTGAATGTTCGCATTC-GGAAATGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTA
* * *
10535029 TTTATAGTCACTCATGCCTTCAAATGCCTTGTCACTCATTTTATGTGGTTTTATAAATTTATAAA
258 TTTATAGTCACTCATGCCTTCAAATGCCTTGTCACTCATTTTAAGTAGTTTTATAACTTTAT-AA
10535094 ATGATTTTGAATTGAATT
322 ATGATTTTGAATTGAATT
* * * **
10535112 TTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTT-CATTGGAAAACATGAAGTGAAAG
1 TTTTTTCATTTCTAGTTAAAACAGATCATAATTGAATGTTTGCATTGGAAAACATGAAGCAAAAG
* * ** * * *
10535176 CCATCCATTAACAAGAAAAATTAATTTATAGTCGCTTATGCCTTCGAAAGTCTAGTTGCTCACTT
66 CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTAGTT-CTCACTT
* * * * * *
10535241 TAAGTTGTTTTTAACTTTAAAAACGATTTTAAATTGAATTTTTTTACATTTCTGGTTAAAACAGA
130 TAAATAGTTTTCAACTTTATAAATGATTTTAAATTGAATTTTTTT-CATTTCTGGTTAAAACATA
* * * ** * * *
10535306 TCATAATTAAATGTTCGCATTGGGAATTGTGAAGTGAAAGCCATCTATTGACAAGAAAGGTCCAT
194 TCATAATTGAATGTTCGCATTCGGAAATGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTAT
*
10535371 TTATAGTCGCTCATGCCTT
259 TTATAGTCACTCATGCCTT
10535390 TAANNNNNNN
Statistics
Matches: 754, Mismatches: 154, Indels: 70
0.77 0.16 0.07
Matches are distributed among these distances:
324 37 0.05
325 83 0.11
326 117 0.16
327 22 0.03
328 2 0.00
331 1 0.00
332 1 0.00
334 1 0.00
336 5 0.01
337 94 0.12
338 32 0.04
339 53 0.07
340 211 0.28
341 94 0.12
342 1 0.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (339 bp):
TTTTTTCATTTCTAGTTAAAACAGATCATAATTGAATGTTTGCATTGGAAAACATGAAGCAAAAG
CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTAGTTCTCACTTT
AAATAGTTTTCAACTTTATAAATGATTTTAAATTGAATTTTTTTCATTTCTGGTTAAAACATATC
ATAATTGAATGTTCGCATTCGGAAATGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTATTT
ATAGTCACTCATGCCTTCAAATGCCTTGTCACTCATTTTAAGTAGTTTTATAACTTTATAAATGA
TTTTGAATTGAATT
Found at i:10535805 original size:171 final size:169
Alignment explanation
Indices: 10535493--10536766 Score: 1154
Period size: 171 Copynumber: 7.3 Consensus size: 169
10535483 NNNNNNNNNN
* * * *
10535493 GGACTTTTTTTGTCAATGGATGGCTTTGGCTTCACGTTTCTCAAGGTAAACATTCAATTATAATC
1 GGACTTTTCTAGTCAATGGATGGCTTTCGCTTCACGTTTCTCGAGGTAAACATTCAATTATAATC
* * *
10535558 TGTTTTAACTAAAAATGTAAGAAAATTCAACTTGAAATGAATAATGAGATTATAAAACAATTTAA
66 TGTTTTAAC-AAAAATGTAAGAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTT-A
*
10535623 AGCGAGTAATAAGCCTTTCGAAGGCATGAGCGACTATAAAT
129 AGCGAGTAATAAGCCTTTCGAAGGCATGAGTGACTATAAAT
* * * * * ** *
10535664 GAACTTTTCTAGTTAATGGATGGCTTTCTCGTCAAGTTTCTCGAGGCGAACATTCAATTATAACC
1 GGACTTTTCTAGTCAATGGATGGCTTTCGCTTCACGTTTCTCGAGGTAAACATTCAATTATAATC
* * * * * * * *
10535729 T-TTCTTAATCGAGAATGTAAAAAAATTCAACTCAAGATTAATTATGAGATTATAAAACTATTTT
66 TGTT-TTAA-CAAAAATGTAAGAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCA-TTT
* * * * *
10535793 AAAC-AGGTAATAATG-CTTTTGAATGTATGAGTGACCATAAAT
128 AAGCGA-GTAATAA-GCCTTTCGAAGGCATGAGTGACTATAAAT
* * * * * * * **
10535835 GGACTTTTCCTA-ACAACGGAGGGTTTTAGCCTCACGTTTCTCAAGGTAAACATTCAATGGTAAT
1 GGACTTTT-CTAGTCAATGGATGGCTTTCGCTTCACGTTTCTCGAGGTAAACATTCAATTATAAT
*
10535899 TTGTTTTAACCAAAAATGTAAGAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTA
65 CTGTTTTAA-CAAAAATGTAAGAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTA
* * * * *
10535964 CAGCGTGTAATAAAACCATTTAC-AACGTGTAATAAGT--CTTTCAAAGGCAT
129 -AGCGAGTAAT-AAGCC-TTT-CGAA-G-G-CATGAGTGACTAT--AA---AT
* * * *
10536014 GAGTGACTATAAATGGATTTTTCTTGCCAATGGATGGCTTTCGCTTCACGTTTCTTGAGGCAAAC
1 --G-GAC--T---T------TTCTAGTCAATGGATGGCTTTCGCTTCACGTTTCTCGAGGTAAAC
*
10536079 ATTCAATTATAATCTGTTTTAACCAAAAATGTAAGAAAATTCAACTTAAAATCAATAATGAGATA
52 ATTCAATTATAATCTGTTTTAA-CAAAAATGTAAGAAAATTCAACTTAAAATCAATAATGAGATT
* * *
10536144 ATGAAACCATTTAATGCAAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAAT
116 ATAAAACCATTTAA-GCGAGTAATAAGCCTTTCGAAGGCATGAGTGACTATAAAT
* * **
10536199 GGACTTTTCTTGTCAATCGATGGCTTTCGCTTCACGTTTCTTAAGGTAAACATTCAATTATAATC
1 GGACTTTTCTAGTCAATGGATGGCTTTCGCTTCACGTTTCTCGAGGTAAACATTCAATTATAATC
* * **
10536264 TGTTTTAAATAAAAATATAAGAAAATTCAACTTGGAATGC-ATAATGAGATTATAAAACCATTTA
66 TGTTTT-AACAAAAATGTAAGAAAATTCAACTTAAAAT-CAATAATGAGATTATAAAACCATTT-
* *
10536328 AAACGAGTAATAAGCCTTTCGAAGGCATGAGCGACTATAAAT
128 AAGCGAGTAATAAGCCTTTCGAAGGCATGAGTGACTATAAAT
** * *
10536370 GGACTTTTCTAGTTTATGGATGGCTTTTC-CTTCACGTTTCTCGAGGTGAACATTCAATTATAAC
1 GGACTTTTCTAGTCAATGGATGGC-TTTCGCTTCACGTTTCTCGAGGTAAACATTCAATTATAAT
* * * *
10536434 CT-TTCTTAGCGAAAAAAGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTT
65 CTGTT-TTAAC-AAAAATGTAAGAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCA-TT
* * *
10536498 TAAGC-AGGTAATAAGAC-TTCTGAAGGAATGAGTGACTATAAAC
127 TAAGCGA-GTAATAAGCCTTTC-GAAGGCATGAGTGACTATAAAT
* * ** * *
10536541 GGAATTTTTGTA-TCAATCAATGGCTTTCACTTCACGTTT-TCTGAGGTAAACATTCAATTATAT
1 GG-ACTTTTCTAGTCAATGGATGGCTTTCGCTTCACGTTTCTC-GAGGTAAACATTCAATTATAA
* * * * *
10536604 TCTGTTTTAACCAAAAGTGGAAAAAACATTCAACTCAAAATCAATAATCAGATTATAAAACCATT
64 TCTGTTTTAA-CAAAAATGTAAGAAA-ATTCAACTTAAAATCAATAATGAGATTATAAAACCATT
* * * *
10536669 TAATGCGAGTAATAAGACTTTCGAAGGCATAAGTAACAATAAAT
127 TAA-GCGAGTAATAAGCCTTTCGAAGGCATGAGTGACTATAAAT
* * * * *
10536713 GGACTTTTCTTGTCAATCGATAGCTTTCGCTTCACGTTTCTAGAGGCAAACATT
1 GGACTTTTCTAGTCAATGGATGGCTTTCGCTTCACGTTTCTCGAGGTAAACATT
10536767 TNNNNNNNNN
Statistics
Matches: 894, Mismatches: 148, Indels: 121
0.77 0.13 0.10
Matches are distributed among these distances:
170 21 0.02
171 567 0.63
172 134 0.15
173 10 0.01
174 2 0.00
175 1 0.00
176 7 0.01
177 1 0.00
179 2 0.00
180 1 0.00
181 1 0.00
182 6 0.01
183 1 0.00
184 1 0.00
185 2 0.00
187 1 0.00
188 7 0.01
189 1 0.00
190 5 0.01
191 5 0.01
192 6 0.01
193 112 0.13
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (169 bp):
GGACTTTTCTAGTCAATGGATGGCTTTCGCTTCACGTTTCTCGAGGTAAACATTCAATTATAATC
TGTTTTAACAAAAATGTAAGAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAG
CGAGTAATAAGCCTTTCGAAGGCATGAGTGACTATAAAT
Found at i:10535979 original size:22 final size:22
Alignment explanation
Indices: 10535951--10535998 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
10535941 TAATGAGATT
*
10535951 ATAAAACCATTTACAGCGTGTA
1 ATAAAACCATTTACAACGTGTA
10535973 ATAAAACCATTTACAACGTGTA
1 ATAAAACCATTTACAACGTGTA
10535995 ATAA
1 ATAA
10535999 GTCTTTCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.46, C:0.17, G:0.10, T:0.27
Consensus pattern (22 bp):
ATAAAACCATTTACAACGTGTA
Found at i:10536169 original size:193 final size:193
Alignment explanation
Indices: 10535819--10536169 Score: 506
Period size: 193 Copynumber: 1.8 Consensus size: 193
10535809 TTTTGAATGT
* *
10535819 ATGAGTGACCATAAATGGACTTTTCCTAACAACGGAGGGTTTTAGCCTCACGTTTCTCAAGGTAA
1 ATGAGTGACCATAAATGGACTTTTCCTAACAACGGAGGGCTTTAGCCTCACGTTTCTCAAGGCAA
* *
10535884 ACATTCAATGGTAATTTGTTTTAACCAAAAATGTAAGAAAATTCAACTTAAAATCAATAATGAGA
66 ACATTCAATGATAATCTGTTTTAACCAAAAATGTAAGAAAATTCAACTTAAAATCAATAATGAGA
* **
10535949 TTATAAAACCATTTACAGCGTGTAATAAAACCATTTACAACGTGTAATAAGTCTTTCAAAGGC
131 TAATAAAACCATTTACAGCAAGTAATAAAACCATTTACAACGTGTAATAAGTCTTTCAAAGGC
* * * ** * * * * **
10536012 ATGAGTGACTATAAATGGATTTTTCTTGCCAATGGATGGCTTTCGCTTCACGTTTCTTGAGGCAA
1 ATGAGTGACCATAAATGGACTTTTCCTAACAACGGAGGGCTTTAGCCTCACGTTTCTCAAGGCAA
*
10536077 ACATTCAATTATAATCTGTTTTAACCAAAAATGTAAGAAAATTCAACTTAAAATCAATAATGAGA
66 ACATTCAATGATAATCTGTTTTAACCAAAAATGTAAGAAAATTCAACTTAAAATCAATAATGAGA
*
10536142 TAATGAAACCATTTA-ATGCAAGTAATAA
131 TAATAAAACCATTTACA-GCAAGTAATAA
10536170 GGCTTTCGAA
Statistics
Matches: 137, Mismatches: 20, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
192 1 0.01
193 136 0.99
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.31
Consensus pattern (193 bp):
ATGAGTGACCATAAATGGACTTTTCCTAACAACGGAGGGCTTTAGCCTCACGTTTCTCAAGGCAA
ACATTCAATGATAATCTGTTTTAACCAAAAATGTAAGAAAATTCAACTTAAAATCAATAATGAGA
TAATAAAACCATTTACAGCAAGTAATAAAACCATTTACAACGTGTAATAAGTCTTTCAAAGGC
Found at i:10536287 original size:364 final size:361
Alignment explanation
Indices: 10535609--10536683 Score: 1207
Period size: 364 Copynumber: 3.0 Consensus size: 361
10535599 TAATGAGATT
*
10535609 ATAAAACAATTTAAAGCGAGTAATAAGCCTTTCGAAGGCATGAGCGACTATAAATGAACTTTTCT
1 ATAAAAC-ATTTAAA-CGAGTAATAAGCCTTTCGAAGGCATGAGCGACTATAAATGGACTTTTCT
* * *
10535674 AGTTAATGGATGGCTTTCTCGTCAAGTTTCTCGAGGCGAACATTCAATTATAACCTTTCTTAATC
64 AGTTAATGGATGGCTTTC-CTTCACGTTTCTCGAGGCGAACATTCAATTATAACCTTTCTTAACC
* * * * * * *
10535739 GAGAATGTAAAAAAATTCAACTCAAGATTAATTATGAGATTATAAAACTATTTTAAACAGGTAAT
128 AAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTTAAGCAGGTAAT
* * * * * * * * * * *
10535804 AATGCTTTTGAATGTATGAGTGACCATAAATGGACTTTTCCTAACAA-CGGAGGGTTTTAGCCTC
193 AAGGCTTTCGAAGGAATGAGTGACTATAAATGGACTTTTCTTATCAATC-GATGGCTTTCGCTTC
* ** *
10535868 ACGTTTCTCAAGGTAAACATTCAATGGTAATTTGTTTTAACCAAAAATGTAAGAAAATTCAACTT
257 ACGTTTCTTAAGGTAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAGAAAATTCAACTT
10535933 AAAATCAATAATGAGATTATAAAACCATTTACAGCGTGTA
322 AAAATCAATAATGAGATTATAAAACCATTTACAGCGTGTA
* * * * *
10535973 ATAAAACCATTTACAACGTGTAATAAGTCTTTCAAAGGCATGAGTGACTATAAATGGATTTTTCT
1 ATAAAA-CATTTA-AACGAGTAATAAGCCTTTCGAAGGCATGAGCGACTATAAATGGACTTTTCT
* ** * * *
10536038 TGCCAATGGATGGCTTTCGCTTCACGTTTCTTGAGGCAAACATTCAATTATAATCTGTT-TTAAC
64 AGTTAATGGATGGCTTTC-CTTCACGTTTCTCGAGGCGAACATTCAATTATAACCT-TTCTTAAC
* * * * *
10536102 CAAAAATGTAAGAAAATTCAACTTAAAATCAATAATGAGATAATGAAACCA-TTTAATGCAAGTA
127 CAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTTAA-GCAGGTA
* *
10536166 ATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATCGATGGCTTTCGCTT
191 ATAAGGCTTTCGAAGGAATGAGTGACTATAAATGGACTTTTCTTATCAATCGATGGCTTTCGCTT
** *
10536231 CACGTTTCTTAAGGTAAACATTCAATTATAATCTGTTTTAAATAAAAATATAAGAAAATTCAACT
256 CACGTTTCTTAAGGTAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAGAAAATTCAACT
**
10536296 TGGAATGC-ATAATGAGATTATAAAA-C-----CA---T-T-
321 TAAAAT-CAATAATGAGATTATAAAACCATTTACAGCGTGTA
10536326 -T-----A---AAACGAGTAATAAGCCTTTCGAAGGCATGAGCGACTATAAATGGACTTTTCTAG
1 ATAAAACATTTAAACGAGTAATAAGCCTTTCGAAGGCATGAGCGACTATAAATGGACTTTTCTAG
* * * *
10536382 TTTATGGATGGCTTTTCCTTCACGTTTCTCGAGGTGAACATTCAATTATAACCTTTCTTAGCGAA
66 TTAATGGATGGC-TTTCCTTCACGTTTCTCGAGGCGAACATTCAATTATAACCTTTCTTAACCAA
*
10536447 AAAAGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTTAAGCAGGTAATAA
130 AAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTTAAGCAGGTAATAA
* * * * *
10536512 GAC-TTCTGAAGGAATGAGTGACTATAAACGGAATTTT-TGTATCAATCAATGGCTTTCACTTCA
195 GGCTTTC-GAAGGAATGAGTGACTATAAATGGACTTTTCT-TATCAATCGATGGCTTTCGCTTCA
* * * * *
10536575 CGTTT-TCTGAGGTAAACATTCAATTATATTCTGTTTTAACCAAAAGTGGAAAAAACATTCAACT
258 CGTTTCT-TAAGGTAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAGAAA-ATTCAACT
* * *
10536639 CAAAATCAATAATCAGATTATAAAACCATTTA-ATGCGAGTA
321 TAAAATCAATAATGAGATTATAAAACCATTTACA-GCGTGTA
10536680 ATAA
1 ATAA
10536684 GACTTTCGAA
Statistics
Matches: 592, Mismatches: 90, Indels: 65
0.79 0.12 0.09
Matches are distributed among these distances:
341 7 0.01
342 244 0.41
343 37 0.06
344 1 0.00
346 1 0.00
348 1 0.00
352 1 0.00
353 1 0.00
354 1 0.00
355 2 0.00
358 2 0.00
363 6 0.01
364 281 0.47
365 7 0.01
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (361 bp):
ATAAAACATTTAAACGAGTAATAAGCCTTTCGAAGGCATGAGCGACTATAAATGGACTTTTCTAG
TTAATGGATGGCTTTCCTTCACGTTTCTCGAGGCGAACATTCAATTATAACCTTTCTTAACCAAA
AATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTTAAGCAGGTAATAAG
GCTTTCGAAGGAATGAGTGACTATAAATGGACTTTTCTTATCAATCGATGGCTTTCGCTTCACGT
TTCTTAAGGTAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAGAAAATTCAACTTAAAA
TCAATAATGAGATTATAAAACCATTTACAGCGTGTA
Found at i:10537394 original size:171 final size:169
Alignment explanation
Indices: 10536868--10538115 Score: 1347
Period size: 171 Copynumber: 7.3 Consensus size: 169
10536858 NNNNNNNNNN
10536868 ATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGG
1 ATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGG
* * * *
10536933 CATGAGTGACTATAAATGGACTTTTGTTGTTAATGGATGGCTTTCGCTTCATGTTTCACGAGGCA
66 CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTT-GCTTCATGTTTCTCGAGGTA
10536998 AACATTCAATT-TCAATCTGTTTTAACGAAAAATGTAAAAA
130 AACATTCAATTAT-AATCTGTTTTAACGAAAAATGTAAAAA
* * * * * *
10537038 ACTTCAACTTGAAATCAAGAATGAGATTATAAAACCATTTAGAGCAAGTAATAAAG-TTGTCGAA
1 A-TTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTT-TCAAA
* * * **
10537102 GGCATGAGT--C-ATAAATGGACCTTTCTTGTCAATGAAAGTGCTTTCGCTTCACATTTCAT-GA
64 GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG-GCTTT-GCTTCATGTTTC-TCGA
* * * *
10537163 GGTAAACATTTATTTATAACCT-TTCTTAACCGAAAACAT-AAAAAA
126 GGTAAACATTCAATTATAATCTGTT-TTAA-CGAAAA-ATGTAAAAA
*
10537208 ATTCAACTTAAAATCAATAATGAGATTATAAAATCATTTAAAGCGAGTAATAAGGCTTTCAAAGG
1 ATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGG
* * * *
10537273 CATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTGTGCTTAACGTTTCTTGAGGTA
66 CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTT-TGCTTCATGTTTCTCGAGGTA
* * * *
10537338 AACATTCAATTATAATCTATTTTTATGAAAAAGGTAAAACA
130 AACATTCAATTATAATCTGTTTTAACGAAAAATGTAAAA-A
* * * ** *
10537379 ATTCAACTTAAAATCAGTAATGAGATTATAAAACAATTTAACA-CAAGTAATAAGGCACTCGAAG
1 ATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAA-AGCGAGTAATAAGGCTTTCAAAG
* * * * * * * *
10537443 GCATGGGCGACTATATAT-GAATCTTTCTTGTCAATTGATGGCTTTTGCTTCAAGTTTCCCAAGG
65 GCATGAGTGACTATAAATGGACT-TTTCTTGTCAATGGATGGC-TTTGCTTCATGTTTCTCGAGG
* * * *
10537507 CAAACATTTAATTATAATTTGTTTTTAACAAAAAATGTAAAAAA
128 TAAACATTCAATTATAATCTG-TTTTAACGAAAAATGT-AAAAA
* * * * * ** *
10537551 ATTCAACAT-AAACCAATAATGAGATTATAAAACCATTTACAGCGAGTGATCAGGCTTTTGAAGT
1 ATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGG
* * * *
10537615 CATGAGTGACTATAAATGGACTTTTCTTATTAATAGATGGCTTTTGCTTCATGTTTCTCGAGGCA
66 CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC-TTTGCTTCATGTTTCTCGAGGTA
* * * * * *
10537680 AACATTTATTTCTAACCT-TTCTGAACCAAAAATGTAAAAA
130 AACATTCAATTATAATCTGTT-TTAACGAAAAATGTAAAAA
* *
10537720 TATTCAACTCAAAATCAATAATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAG
1 -ATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAG
* * * * *
10537785 GCATGAGTGACTATAAATAGACTTTTCTTGCCGATGGATAGCTTTTACTTCATGTTTCTCGAGGT
65 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC-TTTGCTTCATGTTTCTCGAGGT
* * * * *
10537850 AAACATTCAATTCT-ATGCTATTTTTATGAAAAAAGTAAGAAA
129 AAACATTCAATTATAAT-CTGTTTTAACGAAAAATGTAA-AAA
* * *
10537892 ATTCAACTTAAAATCAGTAATGAGATTATAGAACCATTTAAATCGAGTAATAAGGCTTTCAAAGG
1 ATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGG
* * * * *
10537957 CATGAGTGACTATAAATAGAGTTTTCTTCGT-AATGGATGGCTTTCACTCCATGTTTCCCGAGGT
66 CATGAGTGACTATAAATGGACTTTTCTT-GTCAATGGATGGCTTT-GCTTCATGTTTCTCGAGGT
* *
10538021 AAACATGCAATT-TCAATATGTTTTAACGAAAAATGTAAAAAA
129 AAACATTCAATTAT-AATCTGTTTTAACGAAAAATGT-AAAAA
* * *
10538063 ATTCAACTTAAAATCAATCATGAGATTATAAAACCGTTTAAAGCAAGTAATAA
1 ATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAA
10538116 AGCTGTCGAN
Statistics
Matches: 900, Mismatches: 143, Indels: 69
0.81 0.13 0.06
Matches are distributed among these distances:
168 25 0.03
169 107 0.12
170 56 0.06
171 643 0.71
172 65 0.07
173 4 0.00
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.32
Consensus pattern (169 bp):
ATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGG
CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTGCTTCATGTTTCTCGAGGTAA
ACATTCAATTATAATCTGTTTTAACGAAAAATGTAAAAA
Found at i:10537851 original size:513 final size:510
Alignment explanation
Indices: 10536868--10538124 Score: 1645
Period size: 513 Copynumber: 2.5 Consensus size: 510
10536858 NNNNNNNNNN
*
10536868 ATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGG
1 ATTCAACTTAAAATCAGTAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGG
* * *
10536933 CATGAGTGACTATAAATGGA-CTTTTGTTGTTAATGGATGGCTTTCGCTTCATGTTTCACGAGGC
66 CATGAGTGACTATAAATGAATC-TTTCTTG-TAATGGATGGCTTTCGCTTCATGTTTCCCGAGGC
* * * *
10536997 AAACATTCAATTTCAATCTGTTTTAACGAAAAATGTAAAAAACTTCAACTTGAAATCAAGAATGA
129 AAACATTCAATTTCAATATGTTTTAACGAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGA
*
10537062 GATTATAAAACCATTTAGAGCAAGTAATAAAGTTGTCGAAGGCATGAGTCATAAATGGACCTTTC
194 GATTATAAAACCATTTACAGCAAGTAATAAAGTTGTCGAAGGCATGAGTCATAAATGGACCTTTC
* * *
10537127 TTGTCAATGAAAGTGCTTTCGCTTCACATTTCATGAGGTAAACATTTATTTATAACCTTTCTTAA
259 TTATCAATGAAAGTGCTTTCGCTTCACATTTCATGAGGCAAACATTTATTTATAACCTTTCTGAA
* * *
10537192 CCGAAAACATAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAATCATTTAAAGCGAGTA
324 CCAAAAACATAAAAAAATTCAACTCAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTA
* * * *
10537257 ATAAGGCTTTCAAAGGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTGTGCTT
389 ATAAGGCTTTCAAAGGCATAAGTGACTATAAATAGACTTTTCTTGCCAATGGATAGCTTGTACTT
* *
10537322 AACGTTTCTTGAGGTAAACATTCAATTATAAT-CTATTTTTATGAAAAAGGTAA-AACA
454 AACGTTTCTCGAGGTAAACATTCAATTAT-ATGCTATTTTTATGAAAAAAGTAAGAA-A
* * ** *
10537379 ATTCAACTTAAAATCAGTAATGAGATTATAAAACAATTTAACA-CAAGTAATAAGGCACTCGAAG
1 ATTCAACTTAAAATCAGTAATGAGATTATAAAACCATTTAA-AGCGAGTAATAAGGCTTTCAAAG
* * * * * * *
10537443 GCATGGGCGACTATATATGAATCTTTCTTGTCAATTGATGGCTTTTGCTTCAAGTTTCCCAAGGC
65 GCATGAGTGACTATAAATGAATCTTTCTTGT-AATGGATGGCTTTCGCTTCATGTTTCCCGAGGC
* * * * *
10537508 AAACATTTAATTAT-AATTTGTTTTTAACAAAAAATGTAAAAAAATTCAACAT-AAACCAATAAT
129 AAACATTCAATT-TCAATATG-TTTTAACGAAAAATGTAAAAAAATTCAACTTAAAATCAATAAT
* * * * * *
10537571 GAGATTATAAAACCATTTACAGCGAGTGATCAGGCTT-TTGAAGTCATGAGTGACTATAAATGGA
192 GAGATTATAAAACCATTTACAGCAAGTAATAAAG-TTGTCGAAGGCATGAGT--C-ATAAATGGA
* * * * ** *
10537635 CTTTTCTTATTAAT-AGA-TGGCTTTTGCTTCATGTTTC-TCGAGGCAAACATTTATTTCTAACC
253 CCTTTCTTATCAATGAAAGT-GCTTTCGCTTCACATTTCAT-GAGGCAAACATTTATTTATAACC
** *
10537697 TTTCTGAACCAAAAATGTAAAAATATTCAACTCAAAATCAATAATGAGATTATAAAACCATTTAA
316 TTTCTGAACCAAAAACATAAAAAAATTCAACTCAAAATCAATAATGAGATTATAAAACCATTTAA
* * *
10537762 AGTGAGTAATAAGGCTTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGCCGATGGATAGC
381 AGCGAGTAATAAGGCTTTCAAAGGCATAAGTGACTATAAATAGACTTTTCTTGCCAATGGATAGC
* * * *
10537827 TTTTACTTCATGTTTCTCGAGGTAAACATTCAATTCTATGCTATTTTTATGAAAAAAGTAAGAAA
446 TTGTACTTAACGTTTCTCGAGGTAAACATTCAATTATATGCTATTTTTATGAAAAAAGTAAGAAA
* *
10537892 ATTCAACTTAAAATCAGTAATGAGATTATAGAACCATTTAAATCGAGTAATAAGGCTTTCAAAGG
1 ATTCAACTTAAAATCAGTAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGG
* * * *
10537957 CATGAGTGACTATAAATAGAGT-TTTCTTCGTAATGGATGGCTTTCACTCCATGTTTCCCGAGGT
66 CATGAGTGACTATAAAT-GAATCTTTCTT-GTAATGGATGGCTTTCGCTTCATGTTTCCCGAGGC
* *
10538021 AAACATGCAATTTCAATATGTTTTAACGAAAAATGTAAAAAAATTCAACTTAAAATCAATCATGA
129 AAACATTCAATTTCAATATGTTTTAACGAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGA
* * *
10538086 GATTATAAAACCGTTTAAAGCAAGTAATAAAGCTGTCGA
194 GATTATAAAACCATTTACAGCAAGTAATAAAGTTGTCGA
10538125 NNNNNNNNNN
Statistics
Matches: 636, Mismatches: 91, Indels: 36
0.83 0.12 0.05
Matches are distributed among these distances:
510 1 0.00
511 173 0.27
512 69 0.11
513 366 0.58
514 27 0.04
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.32
Consensus pattern (510 bp):
ATTCAACTTAAAATCAGTAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGG
CATGAGTGACTATAAATGAATCTTTCTTGTAATGGATGGCTTTCGCTTCATGTTTCCCGAGGCAA
ACATTCAATTTCAATATGTTTTAACGAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGA
TTATAAAACCATTTACAGCAAGTAATAAAGTTGTCGAAGGCATGAGTCATAAATGGACCTTTCTT
ATCAATGAAAGTGCTTTCGCTTCACATTTCATGAGGCAAACATTTATTTATAACCTTTCTGAACC
AAAAACATAAAAAAATTCAACTCAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAAT
AAGGCTTTCAAAGGCATAAGTGACTATAAATAGACTTTTCTTGCCAATGGATAGCTTGTACTTAA
CGTTTCTCGAGGTAAACATTCAATTATATGCTATTTTTATGAAAAAAGTAAGAAA
Found at i:10538615 original size:20 final size:20
Alignment explanation
Indices: 10538590--10538635 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
10538580 TTTTGATCCC
*
10538590 ATTTGACTTATTAGAGTATA
1 ATTTGACTTAATAGAGTATA
* *
10538610 ATTTGACTTAATGGAGTATG
1 ATTTGACTTAATAGAGTATA
10538630 ATTTGA
1 ATTTGA
10538636 GGTTTAGAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.33, C:0.04, G:0.20, T:0.43
Consensus pattern (20 bp):
ATTTGACTTAATAGAGTATA
Found at i:10540489 original size:22 final size:23
Alignment explanation
Indices: 10540464--10540522 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 23
10540454 CTCTTTTTTT
*
10540464 TTTTAATTTATTTTACTTT-ATA
1 TTTTAATTTATTTTAATTTAATA
* * *
10540486 TTTTATTTTATTATAATTTAATT
1 TTTTAATTTATTTTAATTTAATA
*
10540509 TTTTCATTTATTTT
1 TTTTAATTTATTTT
10540523 TTAGGTGTCT
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
22 16 0.55
23 13 0.45
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.71
Consensus pattern (23 bp):
TTTTAATTTATTTTAATTTAATA
Found at i:10544039 original size:38 final size:38
Alignment explanation
Indices: 10543977--10544055 Score: 90
Period size: 38 Copynumber: 2.1 Consensus size: 38
10543967 AATTTTTTAT
** *
10543977 TAAAAATAATTTAAAATTATATAATATTATAAA-TAAAAA
1 TAAAAATAATTTAAAAAGAAATAAT-TT-TAAATTAAAAA
10544016 TAAAAATAA-TTAAAAAGAAATAATTTTAAATTTAAAAA
1 TAAAAATAATTTAAAAAGAAATAATTTTAAA-TTAAAAA
10544054 TA
1 TA
10544056 TTATAAACAA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
36 4 0.11
37 2 0.06
38 20 0.57
39 9 0.26
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.34
Consensus pattern (38 bp):
TAAAAATAATTTAAAAAGAAATAATTTTAAATTAAAAA
Found at i:10544092 original size:14 final size:14
Alignment explanation
Indices: 10544073--10544110 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
10544063 CAATAGTTAT
*
10544073 AATAATAATTTTAA
1 AATAATTATTTTAA
10544087 AATAATTA-TTTAA
1 AATAATTATTTTAA
10544100 AA-AATTATTTT
1 AATAATTATTTT
10544111 TTAAAAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
12 5 0.23
13 10 0.45
14 7 0.32
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
AATAATTATTTTAA
Found at i:10544558 original size:20 final size:23
Alignment explanation
Indices: 10544532--10544590 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 23
10544522 TAGGTTGAGA
10544532 AATTTAAAATATTAATAA-T-AT
1 AATTTAAAATATTAATAATTGAT
10544553 -ATTTAAAATATTAATAATTGAT
1 AATTTAAAATATTAATAATTGAT
10544575 AATTT-AAATATTAATA
1 AATTTAAAATATTAATA
10544591 TGTTATTTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
20 17 0.49
21 1 0.03
22 13 0.37
23 4 0.11
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (23 bp):
AATTTAAAATATTAATAATTGAT
Found at i:10545235 original size:15 final size:14
Alignment explanation
Indices: 10545191--10545236 Score: 65
Period size: 15 Copynumber: 3.1 Consensus size: 14
10545181 AGATCAGAGA
10545191 TTTTGATTTTAAAG
1 TTTTGATTTTAAAG
*
10545205 CTTTGGATTTTAAAG
1 -TTTTGATTTTAAAG
10545220 TTTTCGATTTTAAAG
1 TTTT-GATTTTAAAG
10545235 TT
1 TT
10545237 GTTTTAAGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
14 3 0.11
15 25 0.89
ACGTcount: A:0.26, C:0.04, G:0.15, T:0.54
Consensus pattern (14 bp):
TTTTGATTTTAAAG
Found at i:10549863 original size:11 final size:11
Alignment explanation
Indices: 10549823--10549868 Score: 51
Period size: 11 Copynumber: 4.3 Consensus size: 11
10549813 TTTTCATAGA
10549823 TTTCAAAGGAT
1 TTTCAAAGGAT
*
10549834 TTT-TAAGGTAT
1 TTTCAAAGG-AT
*
10549845 TGTC-AAGGAT
1 TTTCAAAGGAT
10549855 TTTCAAAGGAT
1 TTTCAAAGGAT
10549866 TTT
1 TTT
10549869 TTAATTTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
10 9 0.31
11 20 0.69
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.43
Consensus pattern (11 bp):
TTTCAAAGGAT
Found at i:10549973 original size:11 final size:10
Alignment explanation
Indices: 10549928--10549996 Score: 50
Period size: 10 Copynumber: 6.7 Consensus size: 10
10549918 TTTTCATAGA
10549928 TTTCAAAGGAT
1 TTTC-AAGGAT
* *
10549939 TTTTAATGTAT
1 TTTCAA-GGAT
*
10549950 TGTCAAGGAT
1 TTTCAAGGAT
10549960 TTTCAAGAGAT
1 TTTCAAG-GAT
*
10549971 TTT-ATGGAT
1 TTTCAAGGAT
* *
10549980 TTTTAAGGTT
1 TTTCAAGGAT
10549990 TTTCAAG
1 TTTCAAG
10549997 TCATTTTTAA
Statistics
Matches: 45, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
9 6 0.13
10 23 0.51
11 16 0.36
ACGTcount: A:0.29, C:0.06, G:0.19, T:0.46
Consensus pattern (10 bp):
TTTCAAGGAT
Found at i:10549983 original size:105 final size:105
Alignment explanation
Indices: 10549791--10549983 Score: 298
Period size: 105 Copynumber: 1.8 Consensus size: 105
10549781 TGTTTAAGGC
* **
10549791 CATTTTAAGCATTTTTTAGGTTTTTTCATAGATTTCAAAGGATTTTTAAGGTATTGTCAAGGATT
1 CATTCTAAGCATTTTAAAGGTTTTTTCATAGATTTCAAAGGATTTTTAAGGTATTGTCAAGGATT
*
10549856 TTCAAAGGATTTTTTAATTTTTTTCGTTGATTTTTAGGGT
66 TTCAAAGGATTTTTGAATTTTTTTCGTTGATTTTTAGGGT
* *
10549896 CATTCTAAGCATTTTAAAGTTTTTTTCATAGATTTCAAAGGATTTTTAATGTATTGTCAAGGATT
1 CATTCTAAGCATTTTAAAGGTTTTTTCATAGATTTCAAAGGATTTTTAAGGTATTGTCAAGGATT
*
10549961 TTC-AAGAGATTTTATGGATTTTT
66 TTCAAAG-GATTTT-TGAATTTTT
10549984 AAGGTTTTTC
Statistics
Matches: 79, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
104 3 0.04
105 69 0.87
106 7 0.09
ACGTcount: A:0.27, C:0.07, G:0.16, T:0.50
Consensus pattern (105 bp):
CATTCTAAGCATTTTAAAGGTTTTTTCATAGATTTCAAAGGATTTTTAAGGTATTGTCAAGGATT
TTCAAAGGATTTTTGAATTTTTTTCGTTGATTTTTAGGGT
Found at i:10550272 original size:10 final size:10
Alignment explanation
Indices: 10550259--10550314 Score: 58
Period size: 10 Copynumber: 5.4 Consensus size: 10
10550249 TTTAAAGTTT
*
10550259 TTTTCATGGA
1 TTTTCAAGGA
*
10550269 TTTTAAAGGA
1 TTTTCAAGGA
* *
10550279 TTTTTAAGATA
1 TTTTCAAG-GA
10550290 TTTTCAAGGA
1 TTTTCAAGGA
10550300 TTTTCAAAGGA
1 TTTTC-AAGGA
10550311 TTTT
1 TTTT
10550315 ACGAATTTTA
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
10 21 0.55
11 17 0.45
ACGTcount: A:0.30, C:0.05, G:0.16, T:0.48
Consensus pattern (10 bp):
TTTTCAAGGA
Found at i:10550283 original size:11 final size:11
Alignment explanation
Indices: 10550269--10550459 Score: 70
Period size: 11 Copynumber: 18.3 Consensus size: 11
10550259 TTTTCATGGA
10550269 TTTTAAAGGAT
1 TTTTAAAGGAT
10550280 TTTT-AA-GAT
1 TTTTAAAGGAT
*
10550289 ATTTTCAAGGAT
1 -TTTTAAAGGAT
*
10550301 TTTCAAAGGA-
1 TTTTAAAGGAT
* *
10550311 TTTT--ACGAA
1 TTTTAAAGGAT
*
10550320 TTTTAAAAG-T
1 TTTTAAAGGAT
*
10550330 TTTTAAAGTCA-
1 TTTTAAAG-GAT
*
10550341 TTTTAAAAGAT
1 TTTTAAAGGAT
**
10550352 TTTTAAAGTCT
1 TTTTAAAGGAT
10550363 TTTT-AAGGAT
1 TTTTAAAGGAT
*
10550373 TTTT-AAGGTGT
1 TTTTAAAGG-AT
* *
10550384 TTTTAATGTAT
1 TTTTAAAGGAT
10550395 TTTT--AGGCAT
1 TTTTAAAGG-AT
*
10550405 TTTT-AAGGCCT
1 TTTTAAAGG-AT
10550416 TTTT-AAGGA-
1 TTTTAAAGGAT
* *
10550425 TATTAAAGGTT
1 TTTTAAAGGAT
* *
10550436 TTTTAGA-TAT
1 TTTTAAAGGAT
*
10550446 TTTTCAAGGAT
1 TTTTAAAGGAT
10550457 TTT
1 TTT
10550460 GAGGGATTTT
Statistics
Matches: 132, Mismatches: 32, Indels: 32
0.67 0.16 0.16
Matches are distributed among these distances:
8 3 0.02
9 11 0.08
10 45 0.34
11 68 0.52
12 5 0.04
ACGTcount: A:0.31, C:0.05, G:0.15, T:0.49
Consensus pattern (11 bp):
TTTTAAAGGAT
Found at i:10550379 original size:10 final size:10
Alignment explanation
Indices: 10550266--10550470 Score: 87
Period size: 10 Copynumber: 19.8 Consensus size: 10
10550256 TTTTTTTCAT
*
10550266 GGATTTTAAA
1 GGATTTTTAA
10550276 GGATTTTTAA
1 GGATTTTTAA
10550286 -GATATTTTCAA
1 GGAT-TTTT-AA
*
10550297 GGATTTTCAAA
1 GGATTTT-TAA
*
10550308 GGA-TTTTAC
1 GGATTTTTAA
* *
10550317 GAATTTTAAA
1 GGATTTTTAA
*
10550327 AG-TTTTTAAA
1 GGATTTTT-AA
* *
10550337 GTCATTTTAAA
1 G-GATTTTTAA
*
10550348 AGATTTTTAAA
1 GGATTTTT-AA
**
10550359 GTCTTTTTAA
1 GGATTTTTAA
10550369 GGATTTTTAA
1 GGATTTTTAA
*
10550379 GGTGTTTTTAA
1 GG-ATTTTTAA
*
10550390 TGTATTTTT-A
1 -GGATTTTTAA
10550400 GGCATTTTTAA
1 GG-ATTTTTAA
*
10550411 GGCCTTTTTAA
1 GG-ATTTTTAA
* *
10550422 GGATATTAAA
1 GGATTTTTAA
*
10550432 GG-TTTTTTA
1 GGATTTTTAA
*
10550441 GATATTTTTCAA
1 G-GATTTTT-AA
* *
10550453 GGATTTTGAG
1 GGATTTTTAA
10550463 GGATTTTT
1 GGATTTTT
10550471 TATGTTTTTA
Statistics
Matches: 141, Mismatches: 38, Indels: 32
0.67 0.18 0.15
Matches are distributed among these distances:
9 16 0.11
10 61 0.43
11 54 0.38
12 10 0.07
ACGTcount: A:0.30, C:0.04, G:0.17, T:0.48
Consensus pattern (10 bp):
GGATTTTTAA
Found at i:10550386 original size:21 final size:21
Alignment explanation
Indices: 10550248--10550459 Score: 91
Period size: 21 Copynumber: 10.1 Consensus size: 21
10550238 TTTCTAAGCA
* * *
10550248 TTTTAAAGTTTTTTTCATGGAT
1 TTTTAAGGTATTTTT-AAGGAT
*
10550270 TTTAAAGG-ATTTTTAA-GAT
1 TTTTAAGGTATTTTTAAGGAT
*
10550289 ATTTTCAAGG-ATTTTCAAAGGA-
1 -TTTT-AAGGTATTTT-TAAGGAT
* * * *
10550311 TTTT-ACGAATTTTAAAAG-T
1 TTTTAAGGTATTTTTAAGGAT
* * *
10550330 TTTTAAAGTCATTTTAAAAGAT
1 TTTTAAGGT-ATTTTTAAGGAT
* *
10550352 TTTTAAAGTCTTTTTAAGGAT
1 TTTTAAGGTATTTTTAAGGAT
* *
10550373 TTTTAAGGTGTTTTTAATGTAT
1 TTTTAAGGTATTTTTAA-GGAT
* *
10550395 TTTT-AGGCATTTTTAAGGCCT
1 TTTTAAGGTATTTTTAAGG-AT
* *
10550416 TTTTAAGG-ATATTAAAGG-T
1 TTTTAAGGTATTTTTAAGGAT
* *
10550435 TTTTTAGATATTTTTCAAGGAT
1 TTTTAAGGTATTTTT-AAGGAT
10550457 TTT
1 TTT
10550460 GAGGGATTTT
Statistics
Matches: 149, Mismatches: 26, Indels: 30
0.73 0.13 0.15
Matches are distributed among these distances:
19 20 0.13
20 16 0.11
21 79 0.53
22 32 0.21
23 2 0.01
ACGTcount: A:0.30, C:0.05, G:0.15, T:0.50
Consensus pattern (21 bp):
TTTTAAGGTATTTTTAAGGAT
Found at i:10550387 original size:32 final size:32
Alignment explanation
Indices: 10550351--10550421 Score: 90
Period size: 32 Copynumber: 2.2 Consensus size: 32
10550341 TTTTAAAAGA
* **
10550351 TTTTTAAAGTCTTTTTAAGG-ATTTTTAAGGTG
1 TTTTTAAAGTATTTTT-AGGCATTTTTAAGGCC
*
10550383 TTTTTAATGTATTTTTAGGCATTTTTAAGGCC
1 TTTTTAAAGTATTTTTAGGCATTTTTAAGGCC
10550415 TTTTTAA
1 TTTTTAA
10550422 GGATATTAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
31 3 0.09
32 31 0.91
ACGTcount: A:0.24, C:0.06, G:0.15, T:0.55
Consensus pattern (32 bp):
TTTTTAAAGTATTTTTAGGCATTTTTAAGGCC
Found at i:10550565 original size:21 final size:21
Alignment explanation
Indices: 10550362--10550569 Score: 64
Period size: 21 Copynumber: 10.1 Consensus size: 21
10550352 TTTTAAAGTC
*
10550362 TTTTTAAGGATTTTTAAGG-T
1 TTTTTAAGGCTTTTTAAGGAT
* *
10550382 GTTTTTAATG-TATTTTTAGGCA-
1 -TTTTTAAGGCT-TTTTAAGG-AT
10550404 TTTTTAAGGCCTTTTTAAGGA-
1 TTTTTAAGG-CTTTTTAAGGAT
* * *
10550425 TATTAAAGG-TTTTTTA-GAT
1 TTTTTAAGGCTTTTTAAGGAT
* * *
10550444 ATTTTTCAAGGATTTTGAGGGAT
1 -TTTTT-AAGGCTTTTTAAGGAT
*
10550467 TTTTT-ATG-TTTTTAA-GAT
1 TTTTTAAGGCTTTTTAAGGAT
* **
10550485 ATATTTAA---TTTTTAATTAT
1 -TTTTTAAGGCTTTTTAAGGAT
* * * * *
10550504 TTATTACGACATTTTAAAGAT
1 TTTTTAAGGCTTTTTAAGGAT
*
10550525 TTTTTAAGGCTTCTTCAAGGAT
1 TTTTTAAGGCTT-TTTAAGGAT
*
10550547 TTTTT-GGGTCTTTTTAAGGAT
1 TTTTTAAGG-CTTTTTAAGGAT
10550568 TT
1 TT
10550570 AGGTTTTTTT
Statistics
Matches: 138, Mismatches: 31, Indels: 36
0.67 0.15 0.18
Matches are distributed among these distances:
18 16 0.12
19 17 0.12
20 7 0.05
21 63 0.46
22 31 0.22
23 4 0.03
ACGTcount: A:0.26, C:0.05, G:0.16, T:0.53
Consensus pattern (21 bp):
TTTTTAAGGCTTTTTAAGGAT
Found at i:10550607 original size:21 final size:21
Alignment explanation
Indices: 10550586--10550631 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
10550576 TTTTTATGAA
10550586 TTTCAA-AAGATTTTCAAGGAAT
1 TTTCAAGAA-ATTTT-AAGGAAT
*
10550608 TTTCAAGAAATTTTAAGGACT
1 TTTCAAGAAATTTTAAGGAAT
10550629 TTT
1 TTT
10550632 AAGGTTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 9 0.41
22 11 0.50
23 2 0.09
ACGTcount: A:0.37, C:0.09, G:0.13, T:0.41
Consensus pattern (21 bp):
TTTCAAGAAATTTTAAGGAAT
Found at i:10550836 original size:10 final size:10
Alignment explanation
Indices: 10550823--10550860 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
10550813 ATTTATTACT
10550823 ATTTTTAAGG
1 ATTTTTAAGG
10550833 ATTTTTAAGG
1 ATTTTTAAGG
*
10550843 CTTTTTGAAGG
1 ATTTTT-AAGG
10550854 ATTTTTA
1 ATTTTTA
10550861 GGTTCATTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 16 0.64
11 9 0.36
ACGTcount: A:0.26, C:0.03, G:0.18, T:0.53
Consensus pattern (10 bp):
ATTTTTAAGG
Found at i:10551741 original size:19 final size:19
Alignment explanation
Indices: 10551714--10551751 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
10551704 CCATTTGACT
10551714 TATTAGAGTATGATTTGAG
1 TATTAGAGTATGATTTGAG
*
10551733 TATTGGAGTATGATTTGAG
1 TATTAGAGTATGATTTGAG
10551752 GTTTAGAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.42
Consensus pattern (19 bp):
TATTAGAGTATGATTTGAG
Found at i:10553504 original size:20 final size:20
Alignment explanation
Indices: 10553447--10553509 Score: 101
Period size: 20 Copynumber: 3.2 Consensus size: 20
10553437 TATATACCCA
*
10553447 TCATCATCATC-TCACCAAC
1 TCATCATCATCATCACCAGC
*
10553466 CCATCATCATCATCACCAGC
1 TCATCATCATCATCACCAGC
10553486 TCATCATCATCATCACCAGC
1 TCATCATCATCATCACCAGC
10553506 TCAT
1 TCAT
10553510 GCGCACTCCC
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
19 10 0.25
20 30 0.75
ACGTcount: A:0.30, C:0.41, G:0.03, T:0.25
Consensus pattern (20 bp):
TCATCATCATCATCACCAGC
Found at i:10553556 original size:43 final size:43
Alignment explanation
Indices: 10553508--10553626 Score: 177
Period size: 43 Copynumber: 2.8 Consensus size: 43
10553498 TCACCAGCTC
* * *
10553508 ATGCGCACTCCCTACTCGCACATGGCTGAGTCATCAC-CGGGTT
1 ATGCGCACTCCCTACTCGCACATAGCCGAGTCATC-CTCGGCTT
* *
10553551 ATGCGCACTCCCTACTCGCACATAACCGGGTCATCCTCGGCTT
1 ATGCGCACTCCCTACTCGCACATAGCCGAGTCATCCTCGGCTT
10553594 ATGCGCACTCCCTACTCGCACATAGCCGAGTCA
1 ATGCGCACTCCCTACTCGCACATAGCCGAGTCA
10553627 ACATAATTAC
Statistics
Matches: 68, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
42 1 0.01
43 67 0.99
ACGTcount: A:0.20, C:0.38, G:0.20, T:0.22
Consensus pattern (43 bp):
ATGCGCACTCCCTACTCGCACATAGCCGAGTCATCCTCGGCTT
Found at i:10556962 original size:2 final size:2
Alignment explanation
Indices: 10556955--10556994 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
10556945 NNNNNNNNNN
10556955 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10556995 GTACTACCAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10558424 original size:171 final size:170
Alignment explanation
Indices: 10558130--10559063 Score: 987
Period size: 171 Copynumber: 5.5 Consensus size: 170
10558120 NNNNNNNNNN
* * *
10558130 GAAGGCATGAGTGACTATAAACGCACTTTTC-TTCTCAAT-GAGTGGCCTTCGCTTCACGA-TTC
1 GAAGGCATGAGTGACTATAAATGAACTTTTCTTTC-CAATGGA-TGGCTTTCGCTTCAC-ATTTC
* * * *
10558192 CTGAGGCAAATATTAAATTGTGATCTGTTTTAATCAAAACGGTAAGAAAATTCAACTTAAAATCA
63 CTAAGGCAAATATTCAATTATGATCTGTTTTAACCAAAACGGTAA-AAAATTCAACTTAAAATCA
*
10558257 ATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGACTTTC
127 ATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGACTTTC
*
10558301 GAAGGCATGAGTGACTATAAATGAACTTTTCTTTCCAATGGATGGCTTTCGCTTCACATTTCCTG
1 GAAGGCATGAGTGACTATAAATGAACTTTTCTTTCCAATGGATGGCTTTCGCTTCACATTTCCTA
* * * * * *
10558366 AGGCAAATATTCACTTATAATCTGTTTCAACCAAAACGGTCAAAGAATTTATCTTAAAATCAATT
66 AGGCAAATATTCAATTATGATCTGTTTTAACCAAAACGGT-AAAAAATTCAACTTAAAATCAATT
* ** * *
10558431 ATGAGGTTATAAAACCATTTCGAGTGAGTAA-AAAAGCTTTC
130 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGA-CTTTC
* * * * * * * *
10558472 GAAGGCATGAGTGAGTATAAA-CAGACTTTTATTACCAACGAATGGCTTTTGCTTCACATTT-TT
1 GAAGGCATGAGTGACTATAAATGA-ACTTTTCTTTCCAATGGATGGCTTTCGCTTCACATTTCCT
* * * *
10558535 CAAAGCAAATATTCAATTATGACCTGTTTTAACCAAAAAGGTAAAAAAATTCAACTTAGAATCAA
65 -AAGGCAAATATTCAATTATGATCTGTTTTAACCAAAACGGT-AAAAAATTCAACTTAAAATCAA
* * * *
10558600 TTATGA-CTGTATAAAACCATTGAAAGCTAGTAATAAGGA-TTTT
128 TTATGAGAT-TATAAAACCATTTAAAGCGAGTAATAA-GACTTTC
* * * * * ** *
10558643 GAAGGCATGAGTAACTATAAATGGACTTTTCTTACCAATAGATGGCTTTTGCTTCATGTTTCTTG
1 GAAGGCATGAGTGACTATAAATGAACTTTTCTTTCCAATGGATGGCTTTCGCTTCACATTTCCT-
* * * * * *
10558708 AA-GTAAATATTCAATTATGATCTATTTGAAGCAAAAAGGTAAAAAAATCAACTTAAAATCAATT
65 AAGGCAAATATTCAATTATGATCTGTTTTAACCAAAACGGTAAAAAATTCAACTTAAAATCAATT
* *
10558772 ATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTC
130 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGACTTTC
* * * **
10558813 GAAGGCATGAATGACTATAAATGAAGTTTT-TTTCTCAATGAATGGCTTTCATTTCACATTT-CT
1 GAAGGCATGAGTGACTATAAATGAACTTTTCTTTC-CAATGGATGGCTTTCGCTTCACATTTCCT
* *
10558876 CAAGGCAAATATTCAATTATGATCTCTTTTAACCAAAAAC-GTAAAAAAGATCAACTTAAAATCA
65 -AAGGCAAATATTCAATTATGATCTGTTTTAACC-AAAACGGTAAAAAA-TTCAACTTAAAATCA
* * * *
10558940 ATTATGAGATTACAAAACCATTTAAAGCAAGTAATAAGGCTTTT
127 ATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGACTTTC
* * * * *
10558984 GAATGCGTGGGAGACTATAAATG-ACTTTTCTTGT-CAATGGATGGCTTTCGCTTCACGTTTCCT
1 GAAGGCATGAGTGACTATAAATGAACTTTTCTT-TCCAATGGATGGCTTTCGCTTCACATTTCCT
* *
10559047 AAGGGAAACATTCAATT
65 AAGGCAAATATTCAATT
10559064 GCAATTTGTG
Statistics
Matches: 637, Mismatches: 105, Indels: 43
0.81 0.13 0.05
Matches are distributed among these distances:
169 7 0.01
170 181 0.28
171 434 0.68
172 14 0.02
173 1 0.00
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.33
Consensus pattern (170 bp):
GAAGGCATGAGTGACTATAAATGAACTTTTCTTTCCAATGGATGGCTTTCGCTTCACATTTCCTA
AGGCAAATATTCAATTATGATCTGTTTTAACCAAAACGGTAAAAAATTCAACTTAAAATCAATTA
TGAGATTATAAAACCATTTAAAGCGAGTAATAAGACTTTC
Found at i:10558908 original size:341 final size:341
Alignment explanation
Indices: 10558130--10559063 Score: 1121
Period size: 342 Copynumber: 2.7 Consensus size: 341
10558120 NNNNNNNNNN
* * * * *
10558130 GAAGGCATGAGTGACTATAAACGCACTTTTCTTCTCAATGAGTGGCCTTCGCTTCACGATTCCT-
1 GAAGGCATGAGTGACTATAAA-GAACTTTTTTTCTCAATGAATGGCTTTCGCTTCAC-ATTTCTC
* * * * * *
10558194 GAGGCAAATATTAAATTGTGATCTGTTTTAATCAAAACGGTAAGAAAATTCAACTTAAAATCAAT
64 AAGGCAAATATTCAATTATGATCTGTTTTAACCAAAAAGGTAAAAAAATTCAACTTAAAATCAAT
* * * *
10558259 TATGAGATTATAAAACTATTTAAAGCGAGTAATAA-GACTTTCGAAGGCATGAGTGACTATAAAT
129 TATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGA-TTTTGAAGGCATGAGTAACTATAAAT
* * * * *
10558323 GAACTTTTCTTTCCAATGGATGGCTTTCGCTTCACATTTCCTGAGGCAAATATTCACTTATAATC
193 GGACTTTTCTTACCAATGGATGGCTTTCGCTTCACGTTTCCTGAAGCAAATATTCAATTATAATC
* * * * * * * **
10558388 TGTTTCAACCAAAACGGTCAAAGAATTTATCTTAAAATCAATTATGAGGTTATAAAACCATTTCG
258 TATTTCAACCAAAAAGGTCAAAAAAATCAACTTAAAATCAATTATGAGATTATAAAACCATTTAA
10558453 AGTGAGTAAAAAAGCTTTC
323 AGTGAGTAAAAAAGCTTTC
* * * * * *
10558472 GAAGGCATGAGTGAGTATAAACAGACTTTTATTAC-CAACGAATGGCTTTTGCTTCACATTTTTC
1 GAAGGCATGAGTGACTATAAAGA-ACTTTT-TTTCTCAATGAATGGCTTTCGCTTCACATTTCTC
* * *
10558536 AAAGCAAATATTCAATTATGACCTGTTTTAACCAAAAAGGTAAAAAAATTCAACTTAGAATCAAT
64 AAGGCAAATATTCAATTATGATCTGTTTTAACCAAAAAGGTAAAAAAATTCAACTTAAAATCAAT
* * *
10558601 TATGA-CTGTATAAAACCATTGAAAGCTAGTAATAAGGATTTTGAAGGCATGAGTAACTATAAAT
129 TATGAGAT-TATAAAACCATTTAAAGCAAGTAATAAGGATTTTGAAGGCATGAGTAACTATAAAT
* * * * * *
10558665 GGACTTTTCTTACCAATAGATGGCTTTTGCTTCATGTTTCTTGAAGTAAATATTCAATTATGATC
193 GGACTTTTCTTACCAATGGATGGCTTTCGCTTCACGTTTCCTGAAGCAAATATTCAATTATAATC
* *
10558730 TATTTGAAGCAAAAAGGT-AAAAAAATCAACTTAAAATCAATTATGAGATTATAAAACCATTTAA
258 TATTTCAACCAAAAAGGTCAAAAAAATCAACTTAAAATCAATTATGAGATTATAAAACCATTTAA
* *
10558794 AGTGAGTAATAAGGCTTTC
323 AGTGAGTAAAAAAGCTTTC
* * **
10558813 GAAGGCATGAATGACTATAAATGAAGTTTTTTTCTCAATGAATGGCTTTCATTTCACATTTCTCA
1 GAAGGCATGAGTGACTATAAA-GAACTTTTTTTCTCAATGAATGGCTTTCGCTTCACATTTCTCA
* *
10558878 AGGCAAATATTCAATTATGATCTCTTTTAACCAAAAACGTAAAAAAGA-TCAACTTAAAATCAAT
65 AGGCAAATATTCAATTATGATCTGTTTTAACCAAAAAGGTAAAAAA-ATTCAACTTAAAATCAAT
* * * * *
10558942 TATGAGATTACAAAACCATTTAAAGCAAGTAATAAGGCTTTTGAATGCGTG-GGAGACTATAAAT
129 TATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGATTTTGAAGGCATGAGTA-ACTATAAAT
** * *
10559006 -GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCT-AAGGGAAACATTCAATT
193 GGACTTTTCTTACCAATGGATGGCTTTCGCTTCACGTTTCCTGAA-GCAAATATTCAATT
10559064 GCAATTTGTG
Statistics
Matches: 500, Mismatches: 81, Indels: 24
0.83 0.13 0.04
Matches are distributed among these distances:
339 2 0.00
340 52 0.10
341 218 0.44
342 224 0.45
343 4 0.01
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.33
Consensus pattern (341 bp):
GAAGGCATGAGTGACTATAAAGAACTTTTTTTCTCAATGAATGGCTTTCGCTTCACATTTCTCAA
GGCAAATATTCAATTATGATCTGTTTTAACCAAAAAGGTAAAAAAATTCAACTTAAAATCAATTA
TGAGATTATAAAACCATTTAAAGCAAGTAATAAGGATTTTGAAGGCATGAGTAACTATAAATGGA
CTTTTCTTACCAATGGATGGCTTTCGCTTCACGTTTCCTGAAGCAAATATTCAATTATAATCTAT
TTCAACCAAAAAGGTCAAAAAAATCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGT
GAGTAAAAAAGCTTTC
Found at i:10561025 original size:172 final size:171
Alignment explanation
Indices: 10560719--10561521 Score: 804
Period size: 172 Copynumber: 4.7 Consensus size: 171
10560709 TATATGAAAC
* * * * * *
10560719 TTTCTTGTCAATTGATGTCTTTTGCTTCAAGTTTC-CAAAAGTAAACATT-TAATTAC-AATCTG
1 TTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-AAGGTAAACATTCAAATT-CTAATCTG
* * * * * * * *
10560781 TTTTAACCAGAAATGCAAACAAATTCAACATAAAACCAATAATGAGATCATAAAATCGTTTAAAA
64 -TTTAATCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAATCATTTAAAA
* * ** *
10560846 TGAGTAATAAGCCTTTTGAAGGCATGAATGACTATAAATAGACTT
128 CGAGTAATAAGGCTTTCAAAGGCATGAGTGACTATAAATAGAC-T
** * * * * * *
10560891 TTTCTTGTCAATAAATGGCTTTGGCTTCATGTTTCTCGAGGTAAACATT-TATTTCTAACCT-TT
1 TTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAGGTAAACATTCAAATTCTAATCTGTT
* * * * *
10560954 CTGAA-CTAAAAATGTAAAAAAATTCACCTCAAAATTAATAATGAGATTATAAAACCATTTAAAG
66 -T-AATC-AAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAATCATTTAAAA
10561018 CGAGTAATAAGGCTTTCAAAGGCATGAGTGACTATAAATAGACT
128 CGAGTAATAAGGCTTTCAAAGGCATGAGTGACTATAAATAGACT
* * * * **
10561062 TTTCTTGTCAATGGATGGTTTTCGCTTCACGTTTCTCGAGATAAACATTC-AATTATAGGCTAGT
1 TTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAGGTAAACATTCAAATTCTAATCT-GT
* * * *
10561126 TTTATGAAAAATGTAAAAAAAATTCAACTTAAAATCAGTAATGAGATTATAAAATCATTTAAAGC
65 TTAATCAAAAATGT-AAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAATCATTTAAAAC
* *
10561191 GAGTAATAAGGGTTTCAAAGGCATGAGTGACTATAAATGGACT
129 GAGTAATAAGGCTTTCAAAGGCATGAGTGACTATAAATAGACT
* * * * * *
10561234 TTTCTT-CCTAATGGATGGCTTTCGATCCATGTTTC-CTAAGGTTAACATTCAAATT-GAATCTG
1 TTTCTTGTC-AATGGATGGCTTTCGCTTCACGTTTCTC-AAGGTAAACATTCAAATTCTAATCTG
* * *
10561296 TTTCAATTAAAAATGTAAGAAAATTCAACTTAAAATCAATAATGAGATTATAAAATCGTTTAAAA
64 TTT-AATCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAATCATTTAAAA
** * * * *
10561361 AAAGTAATAAAGCTGTCGAAA-GCATGAGTGATTATAAATAGACC
128 CGAGTAATAAGGCTTTC-AAAGGCATGAGTGACTATAAATAGACT
* *
10561405 TTTCTTGTCAATGGATGGCTTTTGCTTCACGTTT-TCCAAGGTAAACATTCAATTTC-AATCTGT
1 TTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCT-CAAGGTAAACATTCAAATTCTAATCTG-
* * *
10561468 TTTAATCAAAAAAGTAAAAAAATTCAACATAAAATCAATAATAAGATTATAAAA
64 TTTAATCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAA
10561522 NNNNNNNNNN
Statistics
Matches: 529, Mismatches: 82, Indels: 41
0.81 0.13 0.06
Matches are distributed among these distances:
170 2 0.00
171 241 0.46
172 279 0.53
173 7 0.01
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.33
Consensus pattern (171 bp):
TTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAGGTAAACATTCAAATTCTAATCTGTT
TAATCAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAATCATTTAAAACGA
GTAATAAGGCTTTCAAAGGCATGAGTGACTATAAATAGACT
Found at i:10561339 original size:343 final size:335
Alignment explanation
Indices: 10560460--10561521 Score: 1082
Period size: 343 Copynumber: 3.1 Consensus size: 335
10560450 NNNNNNNNNN
* *
10560460 AAAATGT-AAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATA
1 AAAATGTAAAAAAATTCAACATAAAATCAATAATGAGATTATAAAATCATTTAAAGCGAGTAATA
* * *
10560524 AGGCTTTCAAAAGCATTG-GTGACTATAAATGGACTTTTTTTGTCAATGGATGGCTTTTGCTTCA
66 AGGCTTTCAAAGGCA-TGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCA
* * * * *
10560588 TGTTTCTTGAGG-T-ACTAATTCAATTATAATCTGTTTTATGAGAAATGTAAAAAAATTAAACTT
130 TGTTTCCTGAGGTTAAC--ATTCAATTATAATCTGTTTAATTAAAAATGTAAAAAAATTCAACTT
* * * * * *
10560651 AAAATCAGTAATGATATTATAAAACAATTTAACACAAGTGATAAG------A-CACGAGTGACCA
193 AAAATCAATAATGAGATTATAAAACCATTTAA-ACAAGTAATAAGCTTCAAAGCATGAGTGACTA
* * * * * * *
10560709 TATATGAAACTTTCTTGTCAATTGATGTCTTTTGCTTCAAGTTTC-CAAAAGTAAACATTTAATT
257 TAAAT-AGACTTTCTTGTCAATGGATG-GTTTTGCTTCACGTTTCTCAAGA-TAAACATTCAATT
* *
10560773 ACAATCTGTTTTAACCA
319 ATAATCTGTTTTAATCA
* * * * * * **
10560790 GAAATGCAAACAAATTCAACATAAAACCAATAATGAGATCATAAAATCGTTTAAAATGAGTAATA
1 AAAATGTAAAAAAATTCAACATAAAATCAATAATGAGATTATAAAATCATTTAAAGCGAGTAATA
* ** * * ** *
10560855 AGCCTTTTGAAGGCATGAATGACTATAAATAGACTTTTTCTTGTCAATAAATGGCTTTGGCTTCA
66 AGGCTTTCAAAGGCATGAGTGACTATAAATGGAC-TTTTCTTGTCAATGGATGGCTTTCGCTTCA
* * * * * * *
10560920 TGTTT-CTCGAGGTAAACATTTATTTCTAACCT-TTCTGAACTAAAAATGTAAAAAAATTCACCT
130 TGTTTCCT-GAGGTTAACATTCAATTATAATCTGTT-T-AATTAAAAATGTAAAAAAATTCAACT
* * *
10560983 CAAAATTAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATGAGTG
192 TAAAATCAATAATGAGATTATAAAACCATTTAAA-CAAGTAATAA-GC-TTCAAA-GCATGAGTG
*
10561048 ACTATAAATAGACTTTTCTTGTCAATGGATGGTTTTCGCTTCACGTTTCTCGAGATAAACATTCA
253 ACTATAAATAGAC-TTTCTTGTCAATGGATGGTTTT-GCTTCACGTTTCTCAAGATAAACATTCA
** *
10561113 ATTATAGGCTAGTTTT-ATGA
316 ATTATAATCT-GTTTTAATCA
* *
10561133 AAAATGTAAAAAAAATTCAACTTAAAATCAGTAATGAGATTATAAAATCATTTAAAGCGAGTAAT
1 AAAATGT-AAAAAAATTCAACATAAAATCAATAATGAGATTATAAAATCATTTAAAGCGAGTAAT
* * * *
10561198 AAGGGTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTT-CCTAATGGATGGCTTTCGATCC
65 AAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTC-AATGGATGGCTTTCGCTTC
* * *
10561262 ATGTTTCCTAAGGTTAACATTCAAATT-GAATCTGTTTCAATTAAAAATGTAAGAAAATTCAACT
129 ATGTTTCCTGAGGTTAACATTC-AATTATAATCTGTTT-AATTAAAAATGTAAAAAAATTCAACT
* * *
10561326 TAAAATCAATAATGAGATTATAAAATCGTTTAAAAAAAGTAATAAAGCTGTCGAAAGCATGAGTG
192 TAAAATCAATAATGAGATTATAAAACCATTT-AAACAAGTAAT-AAGCT-TC-AAAGCATGAGTG
* *
10561391 ATTATAAATAGACCTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTT-TCCAAGGTAAACATTC
253 ACTATAAATAGA-CTTTCTTGTCAATGGATGG-TTTTGCTTCACGTTTCT-CAAGATAAACATTC
10561455 AATT-TCAATCTGTTTTAATCA
315 AATTAT-AATCTGTTTTAATCA
* *
10561476 AAAAAGTAAAAAAATTCAACATAAAATCAATAATAAGATTATAAAA
1 AAAATGTAAAAAAATTCAACATAAAATCAATAATGAGATTATAAAA
10561522 NNNNNNNNNN
Statistics
Matches: 593, Mismatches: 102, Indels: 62
0.78 0.13 0.08
Matches are distributed among these distances:
330 7 0.01
331 77 0.13
332 48 0.08
333 56 0.09
334 3 0.01
341 1 0.00
342 52 0.09
343 243 0.41
344 106 0.18
ACGTcount: A:0.40, C:0.13, G:0.14, T:0.33
Consensus pattern (335 bp):
AAAATGTAAAAAAATTCAACATAAAATCAATAATGAGATTATAAAATCATTTAAAGCGAGTAATA
AGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCAT
GTTTCCTGAGGTTAACATTCAATTATAATCTGTTTAATTAAAAATGTAAAAAAATTCAACTTAAA
ATCAATAATGAGATTATAAAACCATTTAAACAAGTAATAAGCTTCAAAGCATGAGTGACTATAAA
TAGACTTTCTTGTCAATGGATGGTTTTGCTTCACGTTTCTCAAGATAAACATTCAATTATAATCT
GTTTTAATCA
Found at i:10562073 original size:19 final size:19
Alignment explanation
Indices: 10562049--10562086 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
10562039 CTGCCAAACC
*
10562049 CTCAAATTATACTCCAATA
1 CTCAAATCATACTCCAATA
10562068 CTCAAATCATACTCCAATA
1 CTCAAATCATACTCCAATA
10562087 AGTCAAATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.29, G:0.00, T:0.29
Consensus pattern (19 bp):
CTCAAATCATACTCCAATA
Found at i:10563514 original size:342 final size:340
Alignment explanation
Indices: 10562973--10563635 Score: 766
Period size: 342 Copynumber: 1.9 Consensus size: 340
10562963 TTCTTGAAGT
* * * *
10562973 GAACATTCAATTATGATATGCTTTAACCAGAAACAAAAGAAATTCAATTAAAATCATTTCTAAAG
1 GAACATTCAATTATAATACGCTTTAACCAGAAACAAAAAAAATTCAATTAAAATCATTTATAAAG
* * ** *
10563038 TTATAAAACCATTTAAAGTAAGTAACGAGGCCTTCGAAGGTATGAGTGACTATAAATAGACTTTT
66 TTATAAAACAACTTAAAACAAGTAACGAGGCCTTCGAAGGCATGAGTGACTATAAATAGACTTTT
* * * * * * *
10563103 CTTATCAATGGATGACTTTCCTTTTATGTTTCTTGATGCGAACATCCAATGATGAGCTGTTTTAA
131 CTTATCAATGGATGACTTTCCTTTCATCTTTCTTCATGCAAACAGCCAATGATGAGATGTTTCAA
* * * *
10563168 CCAAAAAATGAAAA-AACATTCAGTTTGAAAA-GA-TTTATAAAGTTGTAAAACCACTCAAAATG
196 CC-AAAAATGAAAATAA-ATGCAATTT-AAAATCATTTTATAAAGTTATAAAACCACTCAAAATG
* * * * *
10563230 AGTGAGAAGGCATTCGAAGGTATGAGCGATTATAAATGGACTTCTCTTGTCAATGGGTAGCTTTC
258 AGTGACAAGGCATTCAAAGGCATGAGCGACTATAAATAGACTTCTCTTGTCAATGGGTAGCTTTC
10563295 GTTGTACGTTTTCAGATA
323 GTTGTACGTTTTCAGATA
* * * * *
10563313 GAACATTCAATTATAATACGTTTTAATCATAAATATAAAAAAATTCAATTCAAAATGATTTATAA
1 GAACATTCAATTATAATACGCTTTAACCAGAAACA-AAAAAAATTCAATT-AAAATCATTTATAA
* * * *
10563378 AGTTTTAAAATAACTTAAAACAAGTAACTAGG-CTTCAGAAGGCATGAGTGACTATAAATGGACT
64 AGTTATAAAACAACTTAAAACAAGTAACGAGGCCTTC-GAAGGCATGAGTGACTATAAATAGACT
* * * * *
10563442 TTTCTTTTTAATGGATG-GTTTGCGC-TTCATCTTTC-TCATTGCAAATAGCCAATTG-TGATAT
128 TTTCTTATCAATGGATGACTTT-C-CTTTCATCTTTCTTCA-TGCAAACAGCCAA-TGATGAGAT
* * *
10563503 GTTTCAACCAAAAATGAAAATTAATGCAATTTAAAATCATTTTATAAAGTTATAAAATCACTTAA
189 GTTTCAACCAAAAATGAAAATAAATGCAATTTAAAATCATTTTATAAAGTTATAAAACCACTCAA
* * * *
10563568 AATGAGTGACAAGGCATTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTTTCAATGGGTGGC
254 AATGAGTGACAAGGCATTCAAAGGCATGAGCGACTATAAATAGACTTCTCTTGTCAATGGGTAGC
10563633 TTT
319 TTT
10563636 TATTACACTT
Statistics
Matches: 267, Mismatches: 46, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
340 33 0.12
341 41 0.15
342 190 0.71
343 3 0.01
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.33
Consensus pattern (340 bp):
GAACATTCAATTATAATACGCTTTAACCAGAAACAAAAAAAATTCAATTAAAATCATTTATAAAG
TTATAAAACAACTTAAAACAAGTAACGAGGCCTTCGAAGGCATGAGTGACTATAAATAGACTTTT
CTTATCAATGGATGACTTTCCTTTCATCTTTCTTCATGCAAACAGCCAATGATGAGATGTTTCAA
CCAAAAATGAAAATAAATGCAATTTAAAATCATTTTATAAAGTTATAAAACCACTCAAAATGAGT
GACAAGGCATTCAAAGGCATGAGCGACTATAAATAGACTTCTCTTGTCAATGGGTAGCTTTCGTT
GTACGTTTTCAGATA
Found at i:10563690 original size:172 final size:169
Alignment explanation
Indices: 10562796--10563813 Score: 765
Period size: 172 Copynumber: 6.0 Consensus size: 169
10562786 CATGTTTCCT
* * * * * *
10562796 AATGCAAACATCCAATTATGATGTATTTTAACAATAAATGAAAAACAAATTCGATTTGAAATAAT
1 AATGCAAACATCCAATTATGATATGTTTTAACAAAAAATG-AAAA-AAATTCAATTTAAAATCAT
* * ** * * * *
10562861 TTAT-AAGACTATTAAACCACTTAAAGCGAGTAATAATGCCTTCGAAGGCATGAGTGACTATGAA
64 TTATAAAG-TTATAAAACCACTTAAAATGAGTAACAAGGCATTCGAAGGCATGAGTGACTATAAA
* *
10562925 T-GTACTTTTCTTATCAATGGATGGCTTTCGCTTCACATTTCTTG
128 TAG-ACTTTTCTTATCAATGGATGGCTTTC-CTTCACTTTTC-TC
* * * * *
10562969 AAGTG--AACATTCAATTATGATATGCTTTAACCAGAAA-CAAAAGAAATTCAA-TTAAAATCAT
1 AA-TGCAAACATCCAATTATGATATGTTTTAACAAAAAATGAAAA-AAATTCAATTTAAAATCAT
* * * * * * *
10563030 TTCTAAAGTTATAAAACCATTTAAAGTAAGTAACGAGGCCTTCGAAGGTATGAGTGACTATAAAT
64 TTATAAAGTTATAAAACCACTTAAAATGAGTAACAAGGCATTCGAAGGCATGAGTGACTATAAAT
* * *
10563095 AGACTTTTCTTATCAATGGATGACTTTCCTTTTA-TGTTTCTT
129 AGACTTTTCTTATCAATGGATGGCTTTCC-TTCACT-TTTCTC
* * * ** * *
10563137 GATGCGAACATCCAATGATGAGCTGTTTTAACCAAAAAATGAAAAAACATTCAGTTTGAAAA-GA
1 AATGCAAACATCCAATTATGATATGTTTTAA-CAAAAAATGAAAAAA-ATTCAATTT-AAAATCA
* * * * * * *
10563201 TTTATAAAGTTGTAAAACCACTCAAAATGAGTGAGAAGGCATTCGAAGGTATGAGCGATTATAAA
63 TTTATAAAGTTATAAAACCACTTAAAATGAGTAACAAGGCATTCGAAGGCATGAGTGACTATAAA
* * * * * * * *
10563266 TGGACTTCTCTTGTCAATGGGTAGCTTTCGTTGTACGTTT-TC
128 TAGACTTTTCTTATCAATGGATGGCTTTCCTT-CACTTTTCTC
* * * * * *
10563308 AGAT--AGAACATTCAATTATAATACGTTTTAATCATAAATAT-AAAAAAATTCAATTCAAAATG
1 A-ATGCA-AACATCCAATTATGATATGTTTTAA-CA-AAAAATGAAAAAAATTCAATTTAAAATC
* ** ** *
10563370 ATTTATAAAGTTTTAAAATAACTTAAAACAAGTAACTAGGC-TTCAGAAGGCATGAGTGACTATA
62 ATTTATAAAGTTATAAAACCACTTAAAATGAGTAACAAGGCATTC-GAAGGCATGAGTGACTATA
* * *
10563434 AATGGACTTTTCTTTTTAATGGATGG-TTTGCGCTTCA-TCTTTCTC
126 AATAGACTTTTCTTATCAATGGATGGCTTT-C-CTTCACT-TTTCTC
* * * * * * * *
10563479 ATTGCAAATAGCCAATTGTGATATGTTTCAACCAAAAATGAAAATTAATGCAATTTAAAATCATT
1 AATGCAAACATCCAATTATGATATGTTTTAACAAAAAATGAAAA-AAATTCAATTTAAAATCA-T
* * *
10563544 TTATAAAGTTATAAAATCACTTAAAATGAGTGACAAGGCATTCAAAGGCATGAGTGACTATAAAT
64 TTATAAAGTTATAAAACCACTTAAAATGAGTAACAAGGCATTCGAAGGCATGAGTGACTATAAAT
* * **
10563609 AGACTTTTCTTTTCAATGGGTGGCTTTTATTACACTTTTCTC
129 AGACTTTTCTTATCAATGGATGGCTTTCCTT-CACTTTTCTC
* * *
10563651 AATGCAAACATCCAATTATGATGTGTTTTAACAAAAAATGAAAACAAATTTAAATTTAAAATAAT
1 AATGCAAACATCCAATTATGATATGTTTTAACAAAAAATGAAAA-AAA-TTCAATTTAAAATCAT
* * * * * * * * *
10563716 TTATAAA-CTATCAAACCACTTAAAACGAGTAATAATGCCTTCGAAGGTATGAATGACTGTAAAT
64 TTATAAAGTTATAAAACCACTTAAAATGAGTAACAAGGCATTCGAAGGCATGAGTGACTATAAAT
* * **
10563780 -GCACTTTCCTTGTCAATGGACAGCTTTCGCTTCA
129 AG-ACTTTTCTTATCAATGGATGGCTTTC-CTTCA
10563814 TGTTTCATGA
Statistics
Matches: 663, Mismatches: 147, Indels: 72
0.75 0.17 0.08
Matches are distributed among these distances:
167 2 0.00
168 3 0.00
169 125 0.19
170 111 0.17
171 145 0.22
172 250 0.38
173 25 0.04
174 2 0.00
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33
Consensus pattern (169 bp):
AATGCAAACATCCAATTATGATATGTTTTAACAAAAAATGAAAAAAATTCAATTTAAAATCATTT
ATAAAGTTATAAAACCACTTAAAATGAGTAACAAGGCATTCGAAGGCATGAGTGACTATAAATAG
ACTTTTCTTATCAATGGATGGCTTTCCTTCACTTTTCTC
Done.