Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chrUn_random
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10571689
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.28
Warning! 1662808 characters in sequence are not A, C, G, or T
File 8 of 30
Found at i:2691336 original size:67 final size:67
Alignment explanation
Indices: 2691200--2691347 Score: 154
Period size: 67 Copynumber: 2.2 Consensus size: 67
2691190 TGTGGTTGCA
* * * * ** * * * * *
2691200 CCTTTGAAAAACCACTTTGGGTTTTGGTTGAGCTTGTGAAAAACCATTGTGAACGGTTGTGGTTG
1 CCTTTGAAAAGCCACTTTGGGTTATAGTTAAGCCCGAGAAAAACCAGTGTGAAAGGTTGTGGCTA
2691265 AG
66 AG
* * *
2691267 CCTTTGAAAAGCCACTTTGGGTTATAGTTAAGCCCGAGAAAAACTAGTGTTAAAGGTTTTGGCTA
1 CCTTTGAAAAGCCACTTTGGGTTATAGTTAAGCCCGAGAAAAACCAGTGTGAAAGGTTGTGGCTA
2691332 AG
66 AG
2691334 CC-TTGTAAAAGCCA
1 CCTTTG-AAAAGCCA
2691348 TTGTAAAGCT
Statistics
Matches: 66, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
66 3 0.05
67 63 0.95
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (67 bp):
CCTTTGAAAAGCCACTTTGGGTTATAGTTAAGCCCGAGAAAAACCAGTGTGAAAGGTTGTGGCTA
AG
Found at i:2695092 original size:43 final size:43
Alignment explanation
Indices: 2695039--2695164 Score: 153
Period size: 43 Copynumber: 2.9 Consensus size: 43
2695029 GATGATATTG
* * *
2695039 ACCCGGCTATGTACGAGTAGGGAGTGCACATAAGCCGATGCTG
1 ACCCAGCTATGTGCGAGTAGGGAGTGCACATAAGCCGATGCTA
* * * * *
2695082 ATCTAGCTATGTGTGAGTAGGGAGTGCGCATAAGCCAATGCTA
1 ACCCAGCTATGTGCGAGTAGGGAGTGCACATAAGCCGATGCTA
* * *
2695125 ACCCAGCTATGTGCGAGTAGAGAGTGCACATGAGCTGATG
1 ACCCAGCTATGTGCGAGTAGGGAGTGCACATAAGCCGATG
2695165 ATGAGGGGGT
Statistics
Matches: 67, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
43 67 1.00
ACGTcount: A:0.27, C:0.20, G:0.32, T:0.21
Consensus pattern (43 bp):
ACCCAGCTATGTGCGAGTAGGGAGTGCACATAAGCCGATGCTA
Found at i:2700697 original size:61 final size:61
Alignment explanation
Indices: 2700599--2700721 Score: 167
Period size: 61 Copynumber: 2.0 Consensus size: 61
2700589 TTGCTTGGGT
* *
2700599 TTAGTGGATTACGTCCATTGGACCGATGCGCCAGTCATGGCCCGGAATTTGGGTCGTGACA
1 TTAGTGGACTACGTCCATTGGACCCATGCGCCAGTCATGGCCCGGAATTTGGGTCGTGACA
* ** **
2700660 TTAGTGGACTACGTCCATT-GAGCCCATGTGCTGGTCATGGCTTGGAATTTGGGTCGTGACA
1 TTAGTGGACTACGTCCATTGGA-CCCATGCGCCAGTCATGGCCCGGAATTTGGGTCGTGACA
2700721 T
1 T
2700722 CAACAGAGCA
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
60 2 0.04
61 52 0.96
ACGTcount: A:0.19, C:0.21, G:0.31, T:0.29
Consensus pattern (61 bp):
TTAGTGGACTACGTCCATTGGACCCATGCGCCAGTCATGGCCCGGAATTTGGGTCGTGACA
Found at i:2701342 original size:20 final size:22
Alignment explanation
Indices: 2701317--2701372 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
2701307 ATAGTTGTTA
* *
2701317 ATGTATCAATACATT-AAC-CC
1 ATGTATCGATACATTCAACAAC
*
2701337 ATGTATTGATACATTCAACAAC
1 ATGTATCGATACATTCAACAAC
2701359 ATGTATCGATACAT
1 ATGTATCGATACAT
2701373 CTCTACTTGT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 13 0.43
21 3 0.10
22 14 0.47
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (22 bp):
ATGTATCGATACATTCAACAAC
Found at i:2710516 original size:42 final size:42
Alignment explanation
Indices: 2710423--2710540 Score: 155
Period size: 42 Copynumber: 2.8 Consensus size: 42
2710413 CAAGTCATCA
* *
2710423 TCATCATCGGCTTATGCACACTCCCTACTCGCACATGGCCAGG
1 TCATCATCGGCTTATGCGCACTCCC-ACTCGCACATAGCCAGG
* * * *
2710466 TCAGCATCGGCTTATGCGCACTCCCACTCGTACATAGTCGGG
1 TCATCATCGGCTTATGCGCACTCCCACTCGCACATAGCCAGG
* *
2710508 TCATCATCGACTTATGCGCACTCCTACTCGCAC
1 TCATCATCGGCTTATGCGCACTCCCACTCGCAC
2710541 TTAGGCTGGT
Statistics
Matches: 65, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
42 42 0.65
43 23 0.35
ACGTcount: A:0.20, C:0.36, G:0.19, T:0.25
Consensus pattern (42 bp):
TCATCATCGGCTTATGCGCACTCCCACTCGCACATAGCCAGG
Found at i:2731051 original size:12 final size:12
Alignment explanation
Indices: 2731034--2731083 Score: 73
Period size: 12 Copynumber: 4.2 Consensus size: 12
2731024 AACTTCCTAT
*
2731034 TACATAAATATA
1 TACATATATATA
2731046 TACATATATATA
1 TACATATATATA
*
2731058 TATATATATATA
1 TACATATATATA
*
2731070 TATATATATATA
1 TACATATATATA
2731082 TA
1 TA
2731084 TACACTTACA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 36 1.00
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (12 bp):
TACATATATATA
Found at i:2731054 original size:2 final size:2
Alignment explanation
Indices: 2731041--2731085 Score: 81
Period size: 2 Copynumber: 22.5 Consensus size: 2
2731031 TATTACATAA
*
2731041 AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2731083 AT A
1 AT A
2731086 CACTTACATA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:2734426 original size:35 final size:35
Alignment explanation
Indices: 2734385--2734479 Score: 111
Period size: 35 Copynumber: 2.7 Consensus size: 35
2734375 GGAGTGTGTG
* *
2734385 AGTAGGGAGTGCGCATGATGATATTGAAGCGTGCA
1 AGTAGGGAGTGCACATGATGATATTGAAACGTGCA
* * * *
2734420 ATTAGGGAGTGCACACT-ATGATATAGAAATGTGCG
1 AGTAGGGAGTGCACA-TGATGATATTGAAACGTGCA
*
2734455 AGTAGGGAGTGCACGTGATGATATT
1 AGTAGGGAGTGCACATGATGATATT
2734480 ACCTTATACG
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
34 1 0.02
35 47 0.96
36 1 0.02
ACGTcount: A:0.31, C:0.11, G:0.34, T:0.25
Consensus pattern (35 bp):
AGTAGGGAGTGCACATGATGATATTGAAACGTGCA
Found at i:2734789 original size:21 final size:21
Alignment explanation
Indices: 2734763--2734822 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 21
2734753 ACGGTTATAC
2734763 TTCTCACTGTAGCAAGAATCA
1 TTCTCACTGTAGCAAGAATCA
* *
2734784 TTCTCACTGCAGCGAGAATCA
1 TTCTCACTGTAGCAAGAATCA
* **
2734805 TGCTCGTTGTAGCAAGAA
1 TTCTCACTGTAGCAAGAA
2734823 AACTCCTGTC
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (21 bp):
TTCTCACTGTAGCAAGAATCA
Found at i:2738387 original size:19 final size:19
Alignment explanation
Indices: 2738363--2738402 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
2738353 GCTCAAATTA
*
2738363 TCAACTGGACTAGGGTTTC
1 TCAACTGGACAAGGGTTTC
*
2738382 TCAACTGGCCAAGGGTTTC
1 TCAACTGGACAAGGGTTTC
2738401 TC
1 TC
2738403 TTTAAAACCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.20, C:0.25, G:0.25, T:0.30
Consensus pattern (19 bp):
TCAACTGGACAAGGGTTTC
Found at i:2738975 original size:42 final size:43
Alignment explanation
Indices: 2738892--2739062 Score: 231
Period size: 42 Copynumber: 4.0 Consensus size: 43
2738882 TCCCACCATT
* *
2738892 ATCAGCTCATGTGCACTCCCCACTTGCACATAGCTGGGTCATC
1 ATCAGCTCATGTGCACTCCACACATGCACATAGCTGGGTCATC
* *
2738935 ATCAGCTCATGGGCACTCCACAC-TGCACATAGCTAGGTCATC
1 ATCAGCTCATGTGCACTCCACACATGCACATAGCTGGGTCATC
* * *
2738977 ATCAGCTCTTGTGCATTCC-CACACGCACATAGCTGGGTCATC
1 ATCAGCTCATGTGCACTCCACACATGCACATAGCTGGGTCATC
* * *
2739019 ATCAACTCATGTGCACTCC-CACATTCACATAGTTGGGTCATC
1 ATCAGCTCATGTGCACTCCACACATGCACATAGCTGGGTCATC
2739061 AT
1 AT
2739063 TATCACATAA
Statistics
Matches: 113, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
41 3 0.03
42 89 0.79
43 21 0.19
ACGTcount: A:0.24, C:0.33, G:0.18, T:0.26
Consensus pattern (43 bp):
ATCAGCTCATGTGCACTCCACACATGCACATAGCTGGGTCATC
Found at i:2743785 original size:5 final size:5
Alignment explanation
Indices: 2743775--2743799 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
2743765 TATGTGTATG
2743775 AAATA AAATA AAATA AAATA AAATA
1 AAATA AAATA AAATA AAATA AAATA
2743800 TTATAGGACC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAATA
Found at i:2744233 original size:34 final size:34
Alignment explanation
Indices: 2744195--2744274 Score: 105
Period size: 31 Copynumber: 2.4 Consensus size: 34
2744185 CCATTTAAAG
2744195 GCTGGTTTTGGAGGCT-GAAAAGAGCCATTTTTCT
1 GCTGGTTTTGGAGGCTAG-AAAGAGCCATTTTTCT
*
2744229 GCTGGTTTT---GGCTAGAAAGTGCCATTTTTCT
1 GCTGGTTTTGGAGGCTAGAAAGAGCCATTTTTCT
*
2744260 GCTGATTTTGGAGGC
1 GCTGGTTTTGGAGGC
2744275 CAAAAAGTGC
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
31 27 0.68
32 1 0.03
34 12 0.30
ACGTcount: A:0.17, C:0.15, G:0.30, T:0.38
Consensus pattern (34 bp):
GCTGGTTTTGGAGGCTAGAAAGAGCCATTTTTCT
Found at i:2744459 original size:34 final size:33
Alignment explanation
Indices: 2744362--2744461 Score: 105
Period size: 34 Copynumber: 3.0 Consensus size: 33
2744352 TTCAAATTTT
*
2744362 TTTGAAGG--AAAGGTGCAGCTTAGCTGCTGAAA
1 TTTGAAGGAAAAAGGAGCAGCTTAGCTGCTG-AA
* * *
2744394 TTTGAAGGAAAAACAGAGCAGCATAGCTGCTGAT
1 TTTGAAGGAAAAA-GGAGCAGCTTAGCTGCTGAA
* *
2744428 TTTGAAGTAAAAAGGAGCAGCTTTAGTTGCTGAA
1 TTTGAAGGAAAAAGGAGCAGC-TTAGCTGCTGAA
2744462 AATTTCTAGA
Statistics
Matches: 55, Mismatches: 9, Indels: 6
0.79 0.13 0.09
Matches are distributed among these distances:
32 8 0.15
33 7 0.13
34 25 0.45
35 15 0.27
ACGTcount: A:0.35, C:0.12, G:0.28, T:0.25
Consensus pattern (33 bp):
TTTGAAGGAAAAAGGAGCAGCTTAGCTGCTGAA
Found at i:2744617 original size:5 final size:5
Alignment explanation
Indices: 2744594--2744654 Score: 81
Period size: 5 Copynumber: 12.4 Consensus size: 5
2744584 AGGAAGAAGG
*
2744594 AAGAGA AAG-A AAG-A AAGAA AAGAA AAGAA AATAA AAGAA AAGAA AAGAA
1 AAGA-A AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA
*
2744643 AGGAA AAGAA AA
1 AAGAA AAGAA AA
2744655 TAACAAGGAA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
4 8 0.16
5 39 0.78
6 3 0.06
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.02
Consensus pattern (5 bp):
AAGAA
Found at i:2751602 original size:34 final size:34
Alignment explanation
Indices: 2751554--2751636 Score: 103
Period size: 34 Copynumber: 2.4 Consensus size: 34
2751544 TTCAAGAAGG
2751554 GAAACAGAGCCATTTAAGGGCTGGTTTTGGAGGCT
1 GAAA-AGAGCCATTTAAGGGCTGGTTTTGGAGGCT
****
2751589 GAAAAGAGCCATTTTTTTGCTGGTTTTGGAGGCT
1 GAAAAGAGCCATTTAAGGGCTGGTTTTGGAGGCT
* *
2751623 GGAAAGTGCCATTT
1 GAAAAGAGCCATTT
2751637 TTCTGCTGAT
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
34 38 0.90
35 4 0.10
ACGTcount: A:0.24, C:0.13, G:0.31, T:0.31
Consensus pattern (34 bp):
GAAAAGAGCCATTTAAGGGCTGGTTTTGGAGGCT
Found at i:2751637 original size:34 final size:34
Alignment explanation
Indices: 2751573--2751652 Score: 124
Period size: 34 Copynumber: 2.4 Consensus size: 34
2751563 CCATTTAAGG
*
2751573 GCTGGTTTTGGAGGCTGAAAAGAGCCATTTTTTT
1 GCTGGTTTTGGAGGCTGAAAAGAGCCATTTTTCT
* *
2751607 GCTGGTTTTGGAGGCTGGAAAGTGCCATTTTTCT
1 GCTGGTTTTGGAGGCTGAAAAGAGCCATTTTTCT
*
2751641 GCTGATTTTGGA
1 GCTGGTTTTGGA
2751653 AGCCAAAAAG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 42 1.00
ACGTcount: A:0.17, C:0.12, G:0.31, T:0.39
Consensus pattern (34 bp):
GCTGGTTTTGGAGGCTGAAAAGAGCCATTTTTCT
Found at i:2751663 original size:34 final size:34
Alignment explanation
Indices: 2751590--2751665 Score: 89
Period size: 34 Copynumber: 2.2 Consensus size: 34
2751580 TTGGAGGCTG
* * * * **
2751590 AAAAGAGCCATTTTTTTGCTGGTTTTGGAGGCTG
1 AAAAGTGCCATTTTTCTGCTGATTTTGGAAGCCA
*
2751624 GAAAGTGCCATTTTTCTGCTGATTTTGGAAGCCA
1 AAAAGTGCCATTTTTCTGCTGATTTTGGAAGCCA
2751658 AAAAGTGC
1 AAAAGTGC
2751666 AGAATTTTGC
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.25, C:0.14, G:0.26, T:0.34
Consensus pattern (34 bp):
AAAAGTGCCATTTTTCTGCTGATTTTGGAAGCCA
Found at i:2751821 original size:34 final size:34
Alignment explanation
Indices: 2751757--2751847 Score: 103
Period size: 34 Copynumber: 2.6 Consensus size: 34
2751747 AAGGAAAGGT
*
2751757 GCAGCTTAGCTGTTGAAATTTGAAGGAAAAACAGA
1 GCAGCTTAGCTGCTGAAATTTGAAGGAAAAA-AGA
* * * *
2751792 GCAGCATAGCTGCTG-ATTTTGAAGTAAAAAGGA
1 GCAGCTTAGCTGCTGAAATTTGAAGGAAAAAAGA
2751825 GCAGCTTTAGCTGCTGGAAATTT
1 GCAGC-TTAGCTGCT-GAAATTT
2751848 CTGGACTGAA
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
33 7 0.15
34 21 0.46
35 14 0.30
36 4 0.09
ACGTcount: A:0.34, C:0.13, G:0.26, T:0.26
Consensus pattern (34 bp):
GCAGCTTAGCTGCTGAAATTTGAAGGAAAAAAGA
Found at i:2751998 original size:5 final size:5
Alignment explanation
Indices: 2751975--2752035 Score: 81
Period size: 5 Copynumber: 12.4 Consensus size: 5
2751965 AGGAAGAAGG
*
2751975 AAGAGA AAG-A AAG-A AAGAA AAGAA AAGAA AATAA AAGAA AAGAA AAGAA
1 AAGA-A AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA
*
2752024 AGGAA AAGAA AA
1 AAGAA AAGAA AA
2752036 TAACAAGGAA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
4 8 0.16
5 39 0.78
6 3 0.06
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.02
Consensus pattern (5 bp):
AAGAA
Found at i:2754982 original size:35 final size:35
Alignment explanation
Indices: 2754943--2755094 Score: 187
Period size: 35 Copynumber: 4.3 Consensus size: 35
2754933 GGAGTGCGTG
** *
2754943 TGATGATATTGAAGTGTGCGAGTAGATAGTGCATA
1 TGATGATATTGAAGTGTGCGAGTAGGGAGTGCACA
* *
2754978 TGATGATATTGAAGTGTGCGATTAGGGAGTACACA
1 TGATGATATTGAAGTGTGCGAGTAGGGAGTGCACA
* * * *
2755013 CGATGATATTGAAGTGTGCAAGTATGGACTGCACA
1 TGATGATATTGAAGTGTGCGAGTAGGGAGTGCACA
* * *
2755048 CGATGATATAGAAATGTGCGAGTAGGGAGTGCACAA
1 TGATGATATTGAAGTGTGCGAGTAGGGAGTGCAC-A
2755084 TGATGATATTG
1 TGATGATATTG
2755095 CCTTGTGATT
Statistics
Matches: 98, Mismatches: 18, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
35 88 0.90
36 10 0.10
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (35 bp):
TGATGATATTGAAGTGTGCGAGTAGGGAGTGCACA
Found at i:2761694 original size:12 final size:12
Alignment explanation
Indices: 2761677--2761701 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
2761667 ACAGAAATTG
2761677 TGATTTTATAAA
1 TGATTTTATAAA
2761689 TGATTTTATAAA
1 TGATTTTATAAA
2761701 T
1 T
2761702 TTTTTGGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (12 bp):
TGATTTTATAAA
Found at i:2763751 original size:13 final size:13
Alignment explanation
Indices: 2763733--2763757 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2763723 TTTCAGAAAA
2763733 TTTATAAAATCAT
1 TTTATAAAATCAT
2763746 TTTATAAAATCA
1 TTTATAAAATCA
2763758 CAATTTCTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTATAAAATCAT
Found at i:2770831 original size:13 final size:13
Alignment explanation
Indices: 2770813--2770837 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2770803 TTTCAGAAAA
2770813 TTTATAAAATCAT
1 TTTATAAAATCAT
2770826 TTTATAAAATCA
1 TTTATAAAATCA
2770838 CAATTTCTCG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTATAAAATCAT
Found at i:2776205 original size:5 final size:5
Alignment explanation
Indices: 2776197--2776227 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
2776187 CTAACCTGAT
2776197 TTAAC TTAAC -TAAC TTAAC TTAAC TTAAC TT
1 TTAAC TTAAC TTAAC TTAAC TTAAC TTAAC TT
2776228 GAGCCACGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.16
5 21 0.84
ACGTcount: A:0.39, C:0.19, G:0.00, T:0.42
Consensus pattern (5 bp):
TTAAC
Found at i:2776216 original size:14 final size:15
Alignment explanation
Indices: 2776197--2776227 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
2776187 CTAACCTGAT
2776197 TTAACTTAAC-TAAC
1 TTAACTTAACTTAAC
2776211 TTAACTTAACTTAAC
1 TTAACTTAACTTAAC
2776226 TT
1 TT
2776228 GAGCCACGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.39, C:0.19, G:0.00, T:0.42
Consensus pattern (15 bp):
TTAACTTAACTTAAC
Found at i:2776282 original size:15 final size:15
Alignment explanation
Indices: 2776262--2776307 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
2776252 TTCTTAAAAC
2776262 AACTTTAAAACCAAA
1 AACTTTAAAACCAAA
2776277 AACTTTAAAATCC-AA
1 AACTTTAAAA-CCAAA
* *
2776292 AGCTTTAAAATCAAA
1 AACTTTAAAACCAAA
2776307 A
1 A
2776308 TCTCTGATCT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
14 1 0.04
15 24 0.89
16 2 0.07
ACGTcount: A:0.57, C:0.17, G:0.02, T:0.24
Consensus pattern (15 bp):
AACTTTAAAACCAAA
Found at i:2777526 original size:13 final size:13
Alignment explanation
Indices: 2777508--2777532 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2777498 TTTCAGAAAA
2777508 TTTATAAAATCAT
1 TTTATAAAATCAT
2777521 TTTATAAAATCA
1 TTTATAAAATCA
2777533 CAATTTCTCG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTATAAAATCAT
Found at i:2783894 original size:28 final size:27
Alignment explanation
Indices: 2783858--2783910 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
2783848 ATATCCTGGT
*
2783858 GGTGGAAAATTACAATTTTGCCCCTGA
1 GGTGGAAAATTACAATTTTACCCCTGA
*
2783885 GGTGGCAAAATTACCATTTTACCCCT
1 GGTGG-AAAATTACAATTTTACCCCT
2783911 ATACTCCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 5 0.22
28 18 0.78
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (27 bp):
GGTGGAAAATTACAATTTTACCCCTGA
Found at i:2783978 original size:20 final size:20
Alignment explanation
Indices: 2783955--2784000 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
2783945 CTTCTAAACC
2783955 TCAAATCATACT-TCAATAAG
1 TCAAATCATACTCT-AATAAG
*
2783975 TCAAATTATACTCTAATAAG
1 TCAAATCATACTCTAATAAG
2783995 TCAAAT
1 TCAAAT
2784001 GGGGTCAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 23 0.96
21 1 0.04
ACGTcount: A:0.46, C:0.17, G:0.04, T:0.33
Consensus pattern (20 bp):
TCAAATCATACTCTAATAAG
Found at i:2788802 original size:27 final size:27
Alignment explanation
Indices: 2788751--2788802 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
2788741 ATGTCCTGAT
*
2788751 GGTGGAAAATTACAATTTTGCCCCTGG
1 GGTGGAAAATTACAATTTTGACCCTGG
*
2788778 GGTGGCAAAATTACCATTTT-ACCCT
1 GGTGG-AAAATTACAATTTTGACCCT
2788803 TTTACTCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 9 0.41
28 13 0.59
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (27 bp):
GGTGGAAAATTACAATTTTGACCCTGG
Found at i:2788878 original size:20 final size:20
Alignment explanation
Indices: 2788850--2788893 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
2788840 TTTAAACCTT
2788850 AAATCATACTCCAATAAGTC
1 AAATCATACTCCAATAAGTC
*
2788870 AAATTATACTCCAATAAGTC
1 AAATCATACTCCAATAAGTC
2788890 AAAT
1 AAAT
2788894 GGGGTCAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.48, C:0.20, G:0.05, T:0.27
Consensus pattern (20 bp):
AAATCATACTCCAATAAGTC
Found at i:2792426 original size:20 final size:21
Alignment explanation
Indices: 2792398--2792441 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
2792388 TATGGCATAC
*
2792398 AAAATTGCAT-TGTTTTCAAA
1 AAAAGTGCATATGTTTTCAAA
2792418 AAAAGTGCATCATGTTTTCAAA
1 AAAAGTGCAT-ATGTTTTCAAA
2792440 AA
1 AA
2792442 CTTTCAGTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 9 0.43
22 12 0.57
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.34
Consensus pattern (21 bp):
AAAAGTGCATATGTTTTCAAA
Found at i:2794581 original size:20 final size:20
Alignment explanation
Indices: 2794556--2794601 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
2794546 TTTTGGCCCC
2794556 ATTTGACTTATTGGAGTATA
1 ATTTGACTTATTGGAGTATA
*
2794576 ATTTGACTTATTGGAGTATG
1 ATTTGACTTATTGGAGTATA
2794596 ATTTGA
1 ATTTGA
2794602 GGTTTAGAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.28, C:0.04, G:0.22, T:0.46
Consensus pattern (20 bp):
ATTTGACTTATTGGAGTATA
Found at i:2803041 original size:20 final size:20
Alignment explanation
Indices: 2803018--2803061 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
2803008 ATTGAGAAAC
2803018 AGAAAAGACTTAGTCGACCA
1 AGAAAAGACTTAGTCGACCA
** * *
2803038 AGAAGCGAGTTAGTCGACTA
1 AGAAAAGACTTAGTCGACCA
2803058 AGAA
1 AGAA
2803062 GTTACTGCCA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.43, C:0.16, G:0.25, T:0.16
Consensus pattern (20 bp):
AGAAAAGACTTAGTCGACCA
Found at i:2803166 original size:73 final size:72
Alignment explanation
Indices: 2803014--2803206 Score: 185
Period size: 73 Copynumber: 2.6 Consensus size: 72
2803004 GAGTATTGAG
* ** * * *
2803014 AAACAGAAAAGACTTAGTCGACCAAGAAGCGAGTTAGTCGACTAAGAAGTTACTGCCAGAAATCT
1 AAACAG-AACGACTTAGTCGACCAAGAAGTAAGTTAGTCGACTAAGAACTAACTACCAGAAATCT
*
2803079 GGACTTCA
65 GGACTACA
* * *
2803087 AGACAGAACTGACTTAGTCGACCAAGAAGTAAGTTAGTCGACTAAGTACTAACTACCATAAA-CT
1 AAACAGAAC-GACTTAGTCGACCAAGAAGTAAGTTAGTCGACTAAGAACTAACTACCAGAAATCT
*
2803151 GGAAAC-AGA
65 GG--ACTACA
* * *
2803160 AAACAGAGACAACTTAGTTGACTAAGACA-TAAGTTAGTCGACTAAGA
1 AAACAGA-ACGACTTAGTCGACCAAGA-AGTAAGTTAGTCGACTAAGA
2803207 GCATTTTGCC
Statistics
Matches: 99, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
72 6 0.06
73 88 0.89
74 5 0.05
ACGTcount: A:0.42, C:0.18, G:0.20, T:0.20
Consensus pattern (72 bp):
AAACAGAACGACTTAGTCGACCAAGAAGTAAGTTAGTCGACTAAGAACTAACTACCAGAAATCTG
GACTACA
Found at i:2810564 original size:20 final size:21
Alignment explanation
Indices: 2810499--2810560 Score: 106
Period size: 21 Copynumber: 2.9 Consensus size: 21
2810489 CCTAGGTGGA
2810499 AAAATTCAAGGGAAAAGTGTG
1 AAAATTCAAGGGAAAAGTGTG
2810520 AAAATTCAAGGGAAAAGTGTG
1 AAAATTCAAGGGAAAAGTGTG
*
2810541 AAAATTCAAGGAAACAAGTG
1 AAAATTCAAGGGAA-AAGTG
2810561 AAAAAAAGGT
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
21 34 0.87
22 5 0.13
ACGTcount: A:0.50, C:0.06, G:0.26, T:0.18
Consensus pattern (21 bp):
AAAATTCAAGGGAAAAGTGTG
Found at i:2810565 original size:21 final size:21
Alignment explanation
Indices: 2810498--2810566 Score: 93
Period size: 21 Copynumber: 3.2 Consensus size: 21
2810488 CCCTAGGTGG
2810498 AAAAATTCAAGGGAAAAGTGT
1 AAAAATTCAAGGGAAAAGTGT
*
2810519 GAAAATTCAAGGGAAAAGTGT
1 AAAAATTCAAGGGAAAAGTGT
* * *
2810540 GAAAATTCAAGGAAACAAGTGA
1 AAAAATTCAAGGGAA-AAGTGT
2810562 AAAAA
1 AAAAA
2810567 AGGTAAGATT
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
21 34 0.79
22 9 0.21
ACGTcount: A:0.55, C:0.06, G:0.23, T:0.16
Consensus pattern (21 bp):
AAAAATTCAAGGGAAAAGTGT
Found at i:2847534 original size:60 final size:61
Alignment explanation
Indices: 2847391--2847528 Score: 188
Period size: 60 Copynumber: 2.3 Consensus size: 61
2847381 ATAAGAGACC
* * * *
2847391 AAAACAGAAAGTTTTTCGTTGCAGCGAGATTGAATCTCGCTACAACGAAATTTCTACCCAG
1 AAAACAGAAAGTTTCTCGTTGCAGCGAGATTCAATCTCGCTACAACGAAATTGCAACCCAG
* ** *
2847452 -AAACAGAATGTTTCTCGTTGCAGCGAGATTCAATCTCGCTGTAGCGAAATTGCAACCCAG
1 AAAACAGAAAGTTTCTCGTTGCAGCGAGATTCAATCTCGCTACAACGAAATTGCAACCCAG
*
2847512 AAAATAGAAAGTTTCTC
1 AAAACAGAAAGTTTCTC
2847529 ATGCAGGAAT
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
60 52 0.79
61 14 0.21
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (61 bp):
AAAACAGAAAGTTTCTCGTTGCAGCGAGATTCAATCTCGCTACAACGAAATTGCAACCCAG
Found at i:2853878 original size:60 final size:60
Alignment explanation
Indices: 2853784--2853933 Score: 185
Period size: 60 Copynumber: 2.5 Consensus size: 60
2853774 GATAAGAGAC
* * * * * *
2853784 AAAACAGAAAGTTTTTCACTGCAGCGAGATTGAATCTCGTTGCAGCGAAATTGTAACCCA
1 AAAACAGAAAGTTTCTCGCTGCAGCAAGAATGAATCTCGCTGCAGCAAAATTGTAACCCA
* *
2853844 TAAACA-AAAGGTTTCTCGCTGCAGCAAGAATGAATTTCGCTGCAGCAAAATTGTAACCCA
1 AAAACAGAAA-GTTTCTCGCTGCAGCAAGAATGAATCTCGCTGCAGCAAAATTGTAACCCA
* * *
2853904 AAAATAGAAAGTTTCTCGCTGTAGCCAGAA
1 AAAACAGAAAGTTTCTCGCTGCAGCAAGAA
2853934 GCTACAGTGT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
59 3 0.04
60 70 0.92
61 3 0.04
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.24
Consensus pattern (60 bp):
AAAACAGAAAGTTTCTCGCTGCAGCAAGAATGAATCTCGCTGCAGCAAAATTGTAACCCA
Found at i:2854283 original size:20 final size:20
Alignment explanation
Indices: 2854252--2854301 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
2854242 ATACGTATAC
2854252 CCATCATCATCATCATGCA-CA
1 CCATC-TCATCATCAT-CATCA
2854273 CCATCTCATCATCATCATCA
1 CCATCTCATCATCATCATCA
*
2854293 CCAGCTCAT
1 CCATCTCAT
2854302 GCGCACTCCC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 2 0.07
20 20 0.74
21 5 0.19
ACGTcount: A:0.30, C:0.40, G:0.04, T:0.26
Consensus pattern (20 bp):
CCATCTCATCATCATCATCA
Found at i:2854348 original size:43 final size:43
Alignment explanation
Indices: 2854300--2854409 Score: 132
Period size: 43 Copynumber: 2.6 Consensus size: 43
2854290 TCACCAGCTC
**** **
2854300 ATGCGCACTCCCTACTCGCACATGGTTGGGTCATCAC-CGGGTT
1 ATGCGCACTCCCTACTCGCACATAACCGGGTCATC-CTCGACTT
* *
2854343 ATGCGCACTCCCTACTCACACATAACCGGGTCATCCTTGACTT
1 ATGCGCACTCCCTACTCGCACATAACCGGGTCATCCTCGACTT
2854386 ATGCGCACTCCCTACTCGCACATA
1 ATGCGCACTCCCTACTCGCACATA
2854410 GCCAAGTCAA
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
42 1 0.02
43 56 0.98
ACGTcount: A:0.21, C:0.36, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCGCACTCCCTACTCGCACATAACCGGGTCATCCTCGACTT
Found at i:2867670 original size:21 final size:20
Alignment explanation
Indices: 2867645--2867683 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
2867635 CGGCCATAAG
2867645 GAGAGAATAAGAAAGAAAATA
1 GAGAGAA-AAGAAAGAAAATA
* *
2867666 GAGAGGAAAGGAAGAAAA
1 GAGAGAAAAGAAAGAAAA
2867684 GAGAAAAACC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.64, C:0.00, G:0.31, T:0.05
Consensus pattern (20 bp):
GAGAGAAAAGAAAGAAAATA
Found at i:2875381 original size:139 final size:138
Alignment explanation
Indices: 2875222--2875503 Score: 503
Period size: 139 Copynumber: 2.0 Consensus size: 138
2875212 ACCCACGGAT
2875222 AAAATTTGAGATTTTGAGAGAATTTAGATCAAATTTGACAAATTGGAAAATGGTATGAGTATAAG
1 AAAATTTGAGATTTTGAGAGAATTTAGATCAAATTTGACAAATTGGAAAATGGTATGAGTATAAG
*
2875287 GGATGAAAAATATGTCTATGGGCAATTTTTCAG-TTTTTGGGGCAAAAATGTAATTTTTGACTTT
66 GGATGAAAAATATGTCTATGGGCAATTTTTCAGTTTTTTGGGGCAAAAATGTAATTTTTCACTTT
2875351 TACGGGGG
131 TACGGGGG
* *
2875359 NNAAAATTTGAGATTTTGAGAGAATTTAGATCACATTTGACAAATTGGAGAATGGTATGAGTATA
1 --AAAATTTGAGATTTTGAGAGAATTTAGATCAAATTTGACAAATTGGAAAATGGTATGAGTATA
2875424 AGGGATGAAAAATATGTCTATGGGCAATTTTTCAGTTTTTTGGGGCAAAAATGTAATTTTTCACT
64 AGGGATGAAAAATATGTCTATGGGCAATTTTTCAGTTTTTTGGGGCAAAAATGTAATTTTTCACT
2875489 TTTACGGGGG
129 TTTACGGGGG
2875499 CAAAA
1 -AAAA
2875504 GTGTAAATTT
Statistics
Matches: 138, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
139 100 0.72
140 38 0.28
ACGTcount: A:0.35, C:0.07, G:0.23, T:0.34
Consensus pattern (138 bp):
AAAATTTGAGATTTTGAGAGAATTTAGATCAAATTTGACAAATTGGAAAATGGTATGAGTATAAG
GGATGAAAAATATGTCTATGGGCAATTTTTCAGTTTTTTGGGGCAAAAATGTAATTTTTCACTTT
TACGGGGG
Found at i:2875756 original size:21 final size:20
Alignment explanation
Indices: 2875731--2875769 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
2875721 CGGCCATAAG
2875731 GAGAGAACAAGAAAGAAAATA
1 GAGAGAA-AAGAAAGAAAATA
* *
2875752 GAGAGGAAAGGAAGAAAA
1 GAGAGAAAAGAAAGAAAA
2875770 GAGAAAAACC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.64, C:0.03, G:0.31, T:0.03
Consensus pattern (20 bp):
GAGAGAAAAGAAAGAAAATA
Found at i:2878420 original size:170 final size:170
Alignment explanation
Indices: 2878052--2880709 Score: 1322
Period size: 170 Copynumber: 15.9 Consensus size: 170
2878042 AAGGCATATG
* * * * *
2878052 AGGCTTTCGAATGTATGAGTGACTATAAAAGGACTTTTCTTGTCAATGGATGGCTTTCACTTCAT
1 AGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCAT
* * * * * * * * * *
2878117 GTTTCCCAATACAAACATCCAATTGTGCTCTGTTTTAAAT-GAAAATGACAAAACATTCAATTCA
66 GTTTCTCAATGCGAACATTCAATTATGATCT-TTTTAACTAG-AAATGAAAAAAAATTCAGTTCA
* * * * * *
2878181 AATTTATTTATAAAGTTATTAAACCACTCAAA---A-T---G
129 AAATCATTTATAAAGTTATAAAACCATTTAAAGCGAGTAACA
** * * * *
2878216 A-G--TGAGAAGGCATGAGTGACTATAAATCGACTTTTCTTGTGAATGGATGGCTTTTGCTTCAC
1 AGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCAT
* * * * * *
2878278 GTTTCTCAATGCAAACATTAAATTATGATCTGTTTAACCAAAAATGAAAAATAATTCAGTTCAAA
66 GTTTCTCAATGCGAACATTCAATTATGATCTTTTTAACTAGAAATGAAAAAAAATTCAGTTCAAA
*
2878343 ATCATTTCTAAAGTTATAAAACCATTTAAAGCGAGTAACA
131 ATCATTTATAAAGTTATAAAACCATTTAAAGCGAGTAACA
* ** * *
2878383 TGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTC-CATCAATGGATGGCTTTCACTTTAT
1 AGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCAT
* * * * * * * * *
2878447 GTTTTTCGATGCTAACATTGAATTATAATATTTTTTAGCTAGAAATGAAAGAAAATTCA-ATCTA
66 GTTTCTCAATGCGAACATTCAATTATGAT-CTTTTTAACTAGAAATGAAAAAAAATTCAGTTC-A
* * * * * * *
2878511 AAATCACTTACATAGTTGTAAAACCACTTAAGGAGAGTAACA
129 AAATCATTTATAAAGTTATAAAACCATTTAAAGCGAGTAACA
* * * * * * * * * * *
2878553 AGGCCTTTGAAGGCACGAATGACTATAAATGAACTTTTCTTTTTAACGAATTGCTTTCGTTTGAT
1 AGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCAT
* * * * * *
2878618 GTTTCTCGATGTGAACATCCAATGATGAT-TTGTTTGAA-TGAAAAAT-AAAAACAAATTCAATT
66 GTTTCTCAATGCGAACATTCAATTATGATCTT-TTT-AACT-AGAAATGAAAAA-AAATTCAGTT
* * * * * *
2878680 TAAAATGATTTATAAAGTTA-AAAGACC---CAAA-TGAATGACA
127 CAAAATCATTTATAAAGTTATAAA-ACCATTTAAAGCGAGTAACA
* * * * * *
2878720 AGGCATTCAAAGGTATAAGTGACTATAAATGGACTTTTCTAGTCAATGGATGGCTTTCGCTTTAT
1 AGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCAT
2878785 GTTT-TCCAATGCGAACATTCAATTATGATCTATTTTAACTAGAAAT-AAAAACAAATTCAGTTC
66 GTTTCT-CAATGCGAACATTCAATTATGATCT-TTTTAACTAGAAATGAAAAA-AAATTCAGTTC
* *
2878848 AAAATCATTTATAAAGTTATAAAACCATTTAAAGCAAGAAACA
128 AAAATCATTTATAAAGTTATAAAACCATTTAAAGCGAGTAACA
* *
2878891 AGGCCTAT-GAAGGCATGAGTGACTATAAATGGACTTCTCTTGTCAAT-GATGGCTTTTGCTTCA
1 AGGCCT-TCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCA
*
2878954 TGTTTCTCAATGCGAACATTCAACTATGATCTATTTTAACTAGAAATGAAAAAAAATTCAGTTCA
65 TGTTTCTCAATGCGAACATTCAATTATGATCT-TTTTAACTAGAAATGAAAAAAAATTCAGTTCA
* *
2879019 AAATCATTTATAAAGTAATAAAATCATTTAAAGCGAGT-A-A
129 AAATCATTTATAAAGTTATAAAACCATTTAAAGCGAGTAACA
* ** ** * * * *** ** * * *** *
2879059 TGGATTTTTC-TTGTCAATGGATTG-CTTTCGTTTCACGTATCTTG---ATGCGAACAACTAAT-
1 AGG--CCTTCGAAGGC-AT-GAGTGACTATAAATGGACTTTTCTTGTCAATG-G-ATGGCT-TTC
* * ** **** * * **
2879118 GATGATC-TGTTT-T-AA--CCAA-A---AA-TAAAAAAAATTCAA-TTGAAAGTGATTTAAAAA
59 GCT--TCATGTTTCTCAATGCGAACATTCAATTATGATCTTTTTAACTAGAAA-TGA-AAAAAAA
* * * * ** * *
2879172 GT-A-AT-AAAACCATTTA-AAA-TGAGTGACAAGGCATTTGAAG-GCA-T---G
120 TTCAGTTCAAAATCATTTATAAAGTTA-T-A-AAACCATTTAAAGCG-AGTAACA
* * ** * * * ** ** **
2879217 AGTGAC-T-GTAA---ATAGACTTTTCTTGTTAGTGGA--TGGCTT-TCGCTCCAT-G-TTTC-C
1 AG-GCCTTCG-AAGGCAT-GA-GTGAC-TATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGC
* * *** * * * ** *
2879271 --CAAGGTAAAC-ATGC-AATTATGATCTATT-TGAAC--TAGAA--ACAAA-G-AAAA---TTC
61 TTCATGTTTCTCAATGCGAA-CAT--TCAATTATGATCTTTTTAACTAGAAATGAAAAAAAATTC
* *
2879322 AGTTCAAAGTTATTTATAAAGTTATAAAACCATTTAAAGCGAGTAACA
123 AGTTCAAAATCATTTATAAAGTTATAAAACCATTTAAAGCGAGTAACA
* * * * * * * * * *
2879370 AGGCCTTTGAAGGCATGAGTGTCTATCAATAGACTTTGCTTGTCAATGGATAGCTTTCACATGAC
1 AGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCAT
* ** * * * * ** *
2879435 ATTTC-CTGTGTGAACATTCAATTATGATTTGTTTTAACCAAAAATGTAAAAAAAATAAATTTC-
66 GTTTCTCAATGCGAACATTCAATTATGATCT-TTTTAACTAGAAATG-AAAAAAAATTCAGTTCA
* * * * * *
2879498 AATTGATTTATAAAGTTATAAAACCACTTAAAACAAGTGACA
129 AAATCATTTATAAAGTTATAAAACCATTTAAAGCGAGTAACA
* * * * * *
2879540 AGGCATTCAAAGGCATGAATGACTATAAATGGACTTTTCTTGTGAATGGATAGCTTTCGCTTCAC
1 AGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCAT
* * * * * * * * * * * *
2879605 ATTTC-CGAAAGCAAACGTTCAATTATAATCTGTATGAACCAGAAA-CAAAAAACATTTAGTTTA
66 GTTTCTC-AATGCGAACATTCAATTATGATCT-TTTTAACTAGAAATGAAAAAAAATTCAGTTCA
* * *
2879668 AAATCATTTATATAGTCATAAAATCATTTAAAGCGAGTAACA
129 AAATCATTTATAAAGTTATAAAACCATTTAAAGCGAGTAACA
* * *
2879710 AGGCCTTCAAAGGCATGAGTGACTATAATTGGACTTTTCTTGTCAATGGATGGCATTCGCTTCAT
1 AGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCAT
* * * * *
2879775 GTTTC-CTTATGCGAACATTCAATTATGATATGTTTTAACAAGAAATGTAAAAAAATTCAGTTTA
66 GTTTCTC-AATGCGAACATTCAATTATGATCT-TTTTAACTAGAAATGAAAAAAAATTCAGTTCA
*
2879839 AAATCATTTAT-AAGTTAT-AAACCATTTAAAGTGAGTAACA
129 AAATCATTTATAAAGTTATAAAACCATTTAAAGCGAGTAACA
* * * * * ** *
2879879 AGGCCTTTGAA-GCATGAGCGACTATAAATTGACTTTTATTGTCAATTGATGGCTTTCATTTCAC
1 AGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCAT
* * * * *
2879943 ATTTC-CTGATGCGAACATTCAATTATGATTTGTTTTAAATAGAAATGTAAAAAAATTCAGTTTC
66 GTTTCTC-AATGCGAACATTCAATTATGATCT-TTTTAACTAGAAATGAAAAAAAATTCAG-TTC
* * * * * * *
2880007 -AATTGATTTATAAAGTCATAAAAGCACTTAAAACGAGTGACA
128 AAAATCATTTATAAAGTTATAAAACCATTTAAAGCGAGTAACA
* * * *
2880049 AGACATTCGAAGGCATGAATGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCAC
1 AGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCAT
* * * * * * * * * *
2880114 GTTTCCCAATGCAAACATCCAATTGTGATCCGTTTTAACCACAAATGAAAAACAATTCAATTTAA
66 GTTTCTCAATGCGAACATTCAATTATGAT-CTTTTTAACTAGAAATGAAAAAAAATTCAGTTCAA
** ** * *
2880179 AATCATTTTATAAAGTTATAAAACCACATAAAATGAGTGA-T
130 AATCA-TTTATAAAGTTATAAAACCATTTAAAGCGAGTAACA
* * * * ** *
2880220 AGAGCATTCAAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGGTGGCTTTTACTGCA
1 AG-GCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCA
* * * * * * * * *
2880285 CGTTTCTCGATGCAAACATCCAATTATGATGTGTTTTAACCAAAAATGAAAAAAAAATTGA-ATC
65 TGTTTCTCAATGCGAACATTCAATTATGATCT-TTTTAACTAGAAATG-AAAAAAAATTCAGTTC
* **
2880349 AAAATAATTTATAAAACTATAAAACCATTT-AA---AGT----
128 AAAATCATTTATAAAGTTATAAAACCATTTAAAGCGAGTAACA
* * ** ** * * **
2880384 AGGCTTTTGTCGGCATGAGCCACTATGAATAGACTTTTCTTGTCAATGGATGGCTTTTACTTCAT
1 AGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCAT
* * * * * * * * * *
2880449 GTTTCCCGATGCGAACATTGAATTATGATATGTTTTAGCTAGAAATGAAAGAAAGTTTAATTTAA
66 GTTTCTCAATGCGAACATTCAATTATGATCT-TTTTAACTAGAAATGAAAAAAAATTCAGTTCAA
* * *
2880514 AATCATTTATAAAGTTATAGATCCATTTAAAGTGAGTAACA
130 AATCATTTATAAAGTTATAAAACCATTTAAAGCGAGTAACA
* * * * * *
2880555 AAGCCTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTATCAATGGATAGCTATT-ACTTCA
1 AGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCT-TTCGCTTCA
** * * * * * * * * *
2880619 TGTTTCTTGATGCAAACATCCAATGATGAGCTGTTTTAACCAAAAATGAAAAAATATTCAATTTA
65 TGTTTCTCAATGCGAACATTCAATTATGATCT-TTTTAACTAGAAATGAAAAAAAATTCAGTTCA
*
2880684 AAATGATTTATAAAGTTATAAAACCA
129 AAATCATTTATAAAGTTATAAAACCA
2880710 CTCAAAACGA
Statistics
Matches: 1895, Mismatches: 466, Indels: 259
0.72 0.18 0.10
Matches are distributed among these distances:
147 2 0.00
148 3 0.00
149 13 0.01
150 15 0.01
151 6 0.00
152 7 0.00
153 15 0.01
154 14 0.01
155 11 0.01
156 13 0.01
157 6 0.00
158 10 0.01
159 20 0.01
160 70 0.04
161 89 0.05
162 20 0.01
163 122 0.06
164 6 0.00
165 4 0.00
166 3 0.00
167 132 0.07
168 126 0.07
169 102 0.05
170 515 0.27
171 422 0.22
172 139 0.07
173 10 0.01
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.33
Consensus pattern (170 bp):
AGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCAT
GTTTCTCAATGCGAACATTCAATTATGATCTTTTTAACTAGAAATGAAAAAAAATTCAGTTCAAA
ATCATTTATAAAGTTATAAAACCATTTAAAGCGAGTAACA
Found at i:2879904 original size:987 final size:988
Alignment explanation
Indices: 2878221--2880044 Score: 2217
Period size: 987 Copynumber: 1.8 Consensus size: 988
2878211 AAATGAGTGA
* * * *
2878221 GAAGGCATGAGTGACTATAAATCGACTTTTCTTGTGAATGGATGGCTTTTGCTTCACGTTTCTCA
1 GAAGGCATGAGTGACTATAAATAGACTTTTCTTGTGAATGGATGGCTTTCGCTCCACGTTTCCCA
* * * * *
2878286 ATGCAAACATTAAATTATGATCTGTTTAACCAAAAATGAAAAATAATTCAGTTCAAAATCATTTC
66 AGGCAAACATGAAATTATGATCTATTTAACCAAAAATCAAAAATAATTCAGTTCAAAATCATTTA
* *
2878351 TAAAGTTATAAAACCATTTAAAGCGAGTAACATGGCCTTCGAAGGCATGAGTGACTATAAATGGA
131 TAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCCTTCGAAGGCATGAGTGACTATAAATAGA
* * * * ** * *
2878416 CTTTTCCATCAATGGATGGCTTTCACTTTATGTTTTTCGATGCTAACATTGAATTATAATATTTT
196 CTTTGCCATCAATGGATAGCTTTCACATGACATTTCTCGATGCTAACATTCAATTATAATATTTT
* * * * * * * * *
2878481 TTAGCTAGAAATGAAAGAAAATTCAATCTAAAATCACTTACATAGTTGTAAAACCACTTAAGGAG
261 TTAACCAAAAATGAAAGAAAAATAAATCTAAAATCACTTACAAAGTTATAAAACCACTTAAGAAA
* ** * * *
2878546 AGTAACAAGGCCTTTGAAGGCACGAATGACTATAAATGAACTTTTCTTTTTAACGAATTGCTTTC
326 AGTAACAAGGCATTCAAAGGCACGAATGACTATAAATGAACTTTTCTTGTGAACGAATAGCTTTC
* * ** * ** * * * ** *
2878611 GTTTGATGTTTCTCGATGTGAACATCCAATGATGATTTGTTTGAATGAAAAATAAAAACAAATTC
391 GCTTCACATTTCTCGAAGCAAACATCCAATGATAATCTGTATGAACCAAAAACAAAAACAAATTC
* * * * *
2878676 AATTTAAAATGATTTATAAAGTTAAAAGACCCAAATGAATGACAAGGCATTCAAAGGTATAAGTG
456 AATTTAAAATCATTTATAAAGTTAAAACACCCAAACGAATAACAAGGCATTCAAAGGCATAAGTG
* *
2878741 ACTATAAATGGACTTTTCTAGTCAATGGATGGCTTTCGCTTTATGTTTTCCAATGCGAACATTCA
521 ACTATAAATGGACTTTTCTAGTCAATGGATGGCATTCGCTTCATGTTTTCCAATGCGAACATTCA
* *
2878806 ATTATGATCTATTTTAACTAGAAATAAAAACAAATTCAGTTCAAAATCATTTATAAAGTTATAAA
586 ATTATGATATATTTTAACAAGAAATAAAAACAAATTCAGTTCAAAATCATTTATAAAGTTATAAA
* *
2878871 ACCATTTAAAGCAAGAAACAAGGCCTATGAAGGCATGAGTGACTATAAATGGACTTCTCTTGTCA
651 ACCATTTAAAGCAAGAAACAAGGCCTATGAAGGCATGAGCGACTATAAATGGACTTCTATTGTCA
** ** *
2878936 A-TGATGGCTTTTGCTTCATGTTT-CTCAATGCGAACATTCAACTATGATCTATTTTAACTAGAA
716 ATTGATGGCTTTCACTTCACATTTCCT-AATGCGAACATTCAACTATGATCTATTTTAAATAGAA
* * *
2878999 ATGAAAAAAAATTCAG-TTCAAAATCATTTATAAAGTAATAAAATCATTTAAAGCGAGTAATGGA
780 ATGAAAAAAAATTCAGTTTC-AAATCATTTATAAAGTAATAAAAGCACTTAAAACGAGTAATGGA
2879063 TTTTTCTTGTCAATGGATTGCTTTCGTTTCACGTATCTTGATGCGAACAACTAATGATGATCTGT
844 TTTTTCTTGTCAATGGATTGCTTTCGTTTCACGTATCTTGATGCGAACAACTAATGATGATCTGT
2879128 TTTAACCAAAAATAAAAAAAATTCAATTGAAAGTGATTTAAAAAGTAATAAAACCATTTAAAATG
909 TTTAACCAAAAATAAAAAAAATTCAATTGAAAGTGATTTAAAAAGTAATAAAACCATTTAAAATG
2879193 AGTGACAAGGCATTT
974 AGTGACAAGGCATTT
* * * *
2879208 GAAGGCATGAGTGACTGTAAATAGACTTTTCTTGTTAGTGGATGGCTTTCGCTCCATGTTTCCCA
1 GAAGGCATGAGTGACTATAAATAGACTTTTCTTGTGAATGGATGGCTTTCGCTCCACGTTTCCCA
* * * * * *
2879273 AGGTAAACATGCAATTATGATCTATTTGAACTAGAAA-CAAAGAA-AATTCAGTTCAAAGTTATT
66 AGGCAAACATGAAATTATGATCTATTT-AACCAAAAATCAAA-AATAATTCAGTTCAAAATCATT
* * *
2879336 TATAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCCTTTGAAGGCATGAGTGTCTATCAATA
129 TATAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCCTTCGAAGGCATGAGTGACTATAAATA
** *
2879401 GACTTTGCTTGTCAATGGATAGCTTTCACATGACATTTC-CTG-TG-TGAACATTCAATTATGAT
194 GACTTTGC-CATCAATGGATAGCTTTCACATGACATTTCTC-GATGCT-AACATTCAATTATAAT
* * * * * *
2879463 -TTGTTTTAACCAAAAATGTAAA-AAAAATAAATTTCAATTGATTTATAAAGTTATAAAACCACT
256 ATT-TTTTAACCAAAAATG-AAAGAAAAATAAATCTAAAATCACTTACAAAGTTATAAAACCACT
* * * * *
2879526 TAA-AACAAGTGACAAGGCATTCAAAGGCATGAATGACTATAAATGGACTTTTCTTGTGAATGGA
319 TAAGAA-AAGTAACAAGGCATTCAAAGGCACGAATGACTATAAATGAACTTTTCTTGTGAACGAA
* * * *
2879590 TAGCTTTCGCTTCACATTTC-CGAAAGCAAACGTTCAATTATAATCTGTATGAACCAGAAACAAA
383 TAGCTTTCGCTTCACATTTCTCG-AAGCAAACATCCAATGATAATCTGTATGAACCAAAAACAAA
* * * * *** * *
2879654 AA-ACATTTAGTTTAAAATCATTTATATAGTCATAAAATCATTTAAAGCGAGTAACAAGGCCTTC
447 AACAAATTCAATTTAAAATCATTTATAAAGT--TAAAA-CACCCAAA-CGAATAACAAGGCATTC
* * *
2879718 AAAGGCATGAGTGACTATAATTGGACTTTTCTTGTCAATGGATGGCATTCGCTTCATG-TTTCCT
508 AAAGGCATAAGTGACTATAAATGGACTTTTCTAGTCAATGGATGGCATTCGCTTCATGTTTTCC-
* * * *
2879782 TATGCGAACATTCAATTATGATATGTTTTAACAAGAAATGTAAAA-AAATTCAGTTTAAAATCAT
572 AATGCGAACATTCAATTATGATATATTTTAACAAGAAAT-AAAAACAAATTCAGTTCAAAATCAT
** * *
2879846 TTAT-AAGTTAT-AAACCATTTAAAGTGAGTAACAAGGCCTTTGAA-GCATGAGCGACTATAAAT
636 TTATAAAGTTATAAAACCATTTAAAGCAAGAAACAAGGCCTATGAAGGCATGAGCGACTATAAAT
* * * * * *
2879908 TGACTTTTATTGTCAATTGATGGCTTTCATTTCACATTTCCTGATGCGAACATTCAATTATGATT
701 GGACTTCTATTGTCAATTGATGGCTTTCACTTCACATTTCCTAATGCGAACATTCAACTATGATC
* * * * *
2879973 TGTTTTAAATAGAAATGTAAAAAAATTCAGTTTCAATTGATTTATAAAGTCATAAAAGCACTTAA
766 TATTTTAAATAGAAATGAAAAAAAATTCAGTTTCAAATCATTTATAAAGTAATAAAAGCACTTAA
2880038 AACGAGT
831 AACGAGT
2880045 GACAAGACAT
Statistics
Matches: 691, Mismatches: 128, Indels: 35
0.81 0.15 0.04
Matches are distributed among these distances:
986 29 0.04
987 350 0.51
988 165 0.24
989 21 0.03
990 122 0.18
991 4 0.01
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.33
Consensus pattern (988 bp):
GAAGGCATGAGTGACTATAAATAGACTTTTCTTGTGAATGGATGGCTTTCGCTCCACGTTTCCCA
AGGCAAACATGAAATTATGATCTATTTAACCAAAAATCAAAAATAATTCAGTTCAAAATCATTTA
TAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCCTTCGAAGGCATGAGTGACTATAAATAGA
CTTTGCCATCAATGGATAGCTTTCACATGACATTTCTCGATGCTAACATTCAATTATAATATTTT
TTAACCAAAAATGAAAGAAAAATAAATCTAAAATCACTTACAAAGTTATAAAACCACTTAAGAAA
AGTAACAAGGCATTCAAAGGCACGAATGACTATAAATGAACTTTTCTTGTGAACGAATAGCTTTC
GCTTCACATTTCTCGAAGCAAACATCCAATGATAATCTGTATGAACCAAAAACAAAAACAAATTC
AATTTAAAATCATTTATAAAGTTAAAACACCCAAACGAATAACAAGGCATTCAAAGGCATAAGTG
ACTATAAATGGACTTTTCTAGTCAATGGATGGCATTCGCTTCATGTTTTCCAATGCGAACATTCA
ATTATGATATATTTTAACAAGAAATAAAAACAAATTCAGTTCAAAATCATTTATAAAGTTATAAA
ACCATTTAAAGCAAGAAACAAGGCCTATGAAGGCATGAGCGACTATAAATGGACTTCTATTGTCA
ATTGATGGCTTTCACTTCACATTTCCTAATGCGAACATTCAACTATGATCTATTTTAAATAGAAA
TGAAAAAAAATTCAGTTTCAAATCATTTATAAAGTAATAAAAGCACTTAAAACGAGTAATGGATT
TTTCTTGTCAATGGATTGCTTTCGTTTCACGTATCTTGATGCGAACAACTAATGATGATCTGTTT
TAACCAAAAATAAAAAAAATTCAATTGAAAGTGATTTAAAAAGTAATAAAACCATTTAAAATGAG
TGACAAGGCATTT
Found at i:2880069 original size:509 final size:512
Alignment explanation
Indices: 2879131--2880731 Score: 1621
Period size: 506 Copynumber: 3.2 Consensus size: 512
2879121 GATCTGTTTT
* * * * * * *
2879131 AACCAAAAATAAAAAA-AATTCAATTGAAAGTGA-TTTAAAAAGTAATAAAACCATTTAAAATGA
1 AACCACAAACAAAAAACAATTCAATTTAAAATCATTTTATAAAGTCATAAAACCATTTAAAATGA
** * * * *
2879194 GTGACAAGGCATTTGAAGGCATGAGTGACTGTAAATAGACTTTTCTTGTTAGTGGATGGCTTTCG
66 GTGACAAGGCATTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCG
* * * * * * * * * *
2879259 CTCCATGTTTCCCAAGGTAAACATGCAATTATGATCTATTTGAACTAGAAA-CAAAGAAAATTCA
131 CTCCATGTTTCCTAATGCAAACATCCAATTATGATATGTTTTAACAAGAAATGAAAAAAAATTCA
* *
2879323 GTTCAAAGTTATTTATAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCCTTTGAAGGCATGA
196 GTTCAAAATAATTTATAAAGTTATAAAACCATTTAAAG-GAGTAACAAGGCCTTTGAA-GCATGA
* * * * * * * *
2879388 GTGTCTATCAATAGACTTTGCTTGTCAATGGATAGCTTTCACATGACATTTCCTG-TGTGAACAT
259 GCGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCACTTCACATTTCCTGATGCGAACAT
* * *
2879452 TCAATTATGATTTGTTTTAACCAAAAATGTAAAAAAAATAAATTTCAATTGATTTATAAAGTTAT
324 TCAATTATGATTTGTTTTAACTAGAAATGTAAAAAAATTAAATTTCAATTGATTTATAAAGTTAT
* *
2879517 AAAACCACTTAAAACAAGTGACAAGGCATTCAAAGGCATGAATGACTATAAATGGACTTTTCTTG
389 AAAACCACTTAAAACGAGTGACAAGACATTCAAAGGCATGAATGACTATAAATGGACTTTTCTTG
* * * * *
2879582 TGAATGGATAGCTTTCGCTTCACATTTCCGAAAGCAAACGTTCAATTATAATCTGTATG
454 TCAATGGATAGCTTTCGCTTCACATTTCCCAAAGCAAACATCCAATTATAATCCGTATG
* * * * * **
2879641 AACCAGAAACAAAAAAC-ATTTAGTTTAAAATCA-TTTATATAGTCATAAAATCATTTAAAGCGA
1 AACCACAAACAAAAAACAATTCAATTTAAAATCATTTTATAAAGTCATAAAACCATTTAAAATGA
* * * *
2879704 GTAACAAGGCCTTCAAAGGCATGAGTGACTATAATTGGACTTTTCTTGTCAATGGATGGCATTCG
66 GTGACAAGGCATTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCG
* * * * *
2879769 CTTCATGTTTCCTTATGCGAACATTCAATTATGATATGTTTTAACAAGAAATGTAAAAAAATTCA
131 CTCCATGTTTCCTAATGCAAACATCCAATTATGATATGTTTTAACAAGAAATGAAAAAAAATTCA
* *
2879834 GTTTAAAATCATTTAT-AAGTTAT-AAACCATTTAAAGTGAGTAACAAGGCCTTTGAAGCATGAG
196 GTTCAAAATAATTTATAAAGTTATAAAACCATTTAAAG-GAGTAACAAGGCCTTTGAAGCATGAG
* * * *
2879897 CGACTATAAATTGACTTTTATTGTCAATTGATGGCTTTCATTTCACATTTCCTGATGCGAACATT
260 CGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCACTTCACATTTCCTGATGCGAACATT
* * * *
2879962 CAATTATGATTTGTTTTAAATAGAAATGTAAAAAAATTCAGTTTCAATTGATTTATAAAGTCATA
325 CAATTATGATTTGTTTTAACTAGAAATGTAAAAAAATTAAATTTCAATTGATTTATAAAGTTATA
* *
2880027 AAAGCACTTAAAACGAGTGACAAGACATTCGAAGGCATGAATGACTATAAATGGACTTTTCTTGT
390 AAACCACTTAAAACGAGTGACAAGACATTCAAAGGCATGAATGACTATAAATGGACTTTTCTTGT
* * * * * * *
2880092 CAATGGATGGCTTTCGCTTCACGTTTCCCAATGCAAACATCCAATTGTGATCCGTTTT
455 CAATGGATAGCTTTCGCTTCACATTTCCCAAAGCAAACATCCAATTATAATCCGTATG
** * **
2880150 AACCACAAATGAAAAACAATTCAATTTAAAATCATTTTATAAAGTTATAAAACCACATAAAATGA
1 AACCACAAACAAAAAACAATTCAATTTAAAATCATTTTATAAAGTCATAAAACCATTTAAAATGA
* * * *
2880215 GTGA-TAGAGCATTCAAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGGTGGCTTTT
66 GTGACAAG-GCATTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTC
* * * * *
2880279 ACTGCACGTTT-CTCGATGCAAACATCCAATTATGATGTGTTTTAACCAA-AAATGAAAAAAAAA
130 GCTCCATGTTTCCT-AATGCAAACATCCAATTATGATATGTTTTAA-CAAGAAATG-AAAAAAAA
* * ** * **
2880342 TTGA-ATCAAAATAATTTATAAAACTATAAAACCATTT-AA--AGT----AGGCTTTTGTCGGCA
192 TTCAGTTCAAAATAATTTATAAAGTTATAAAACCATTTAAAGGAGTAACAAGGCCTTTG-AAGCA
* * * ** *
2880399 TGAGCCACTATGAATAGACTTTTCTTGTCAATGGATGGCTTTTACTTCATGTTTCCCGATGCGAA
256 TGAGCGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCACTTCACATTTCCTGATGCGAA
* * * * * * * *
2880464 CATTGAATTATGATATGTTTTAGCTAGAAATG-AAAGAAAGTTTAATTTAAAATCATTTATAAAG
321 CATTCAATTATGATTTGTTTTAACTAGAAATGTAAA-AAAATTAAATTTCAATTGATTTATAAAG
* * * ** * * * *
2880528 TTATAGATCCATTTAAAGTGAGTAACAA-AGCCTTCAAAGGCATGAGTGACTATAAATAGACTTT
385 TTATAAAACCACTTAAAACGAGTGACAAGA-CATTCAAAGGCATGAATGACTATAAATGGACTTT
* * ** *** * * * * * * *
2880592 TCTTATCAATGGATAGCTATT-ACTTCATGTTTCTTGATGCAAACATCCAATGATGAGCTGTTTT
449 TCTTGTCAATGGATAGCT-TTCGCTTCACATTTCCCAAAGCAAACATCCAATTATAATCCGTATG
* * * * * * * *
2880656 AACCAAAAATGAAAAAA-TATTCAATTTAAAATGA-TTTATAAAGTTATAAAACCACTCAAAACG
1 AACCACAAA-CAAAAAACAATTCAATTTAAAATCATTTTATAAAGTCATAAAACCATTTAAAATG
*
2880719 AGTGAGAAGGCAT
65 AGTGACAAGGCAT
2880732 GAGTGACTAT
Statistics
Matches: 909, Mismatches: 165, Indels: 39
0.82 0.15 0.04
Matches are distributed among these distances:
505 47 0.05
506 233 0.26
507 7 0.01
508 50 0.06
509 223 0.25
510 169 0.19
511 151 0.17
512 20 0.02
513 9 0.01
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.32
Consensus pattern (512 bp):
AACCACAAACAAAAAACAATTCAATTTAAAATCATTTTATAAAGTCATAAAACCATTTAAAATGA
GTGACAAGGCATTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCG
CTCCATGTTTCCTAATGCAAACATCCAATTATGATATGTTTTAACAAGAAATGAAAAAAAATTCA
GTTCAAAATAATTTATAAAGTTATAAAACCATTTAAAGGAGTAACAAGGCCTTTGAAGCATGAGC
GACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCACTTCACATTTCCTGATGCGAACATTC
AATTATGATTTGTTTTAACTAGAAATGTAAAAAAATTAAATTTCAATTGATTTATAAAGTTATAA
AACCACTTAAAACGAGTGACAAGACATTCAAAGGCATGAATGACTATAAATGGACTTTTCTTGTC
AATGGATAGCTTTCGCTTCACATTTCCCAAAGCAAACATCCAATTATAATCCGTATG
Found at i:2880623 original size:171 final size:170
Alignment explanation
Indices: 2879064--2880709 Score: 1433
Period size: 170 Copynumber: 9.7 Consensus size: 170
2879054 AGTAATGGAT
* ** * ** * * *
2879064 TTTTCTTGTCAATGGATTGCTTTCGTTTCACGTATCTTGATGCGAACA-ACTAATGATGATCTGT
1 TTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTCCCGATGCAAACATTC-AATTATGATCTGT
* * * * * * * *
2879128 TTTAACCAAAAATAAAAAAAATTCAATTGAAAGTGATTTAAAAAGTAATAAAACCATTTAAAATG
65 TTTAACCAGAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAAGTG
* * *
2879193 AGTGACAAGGCATTTGAAGGCATGAGTGACTGTAAATAGAC
130 AGTAACAAGGCATTCGAAGGCATGAGTGACTATAAATAGAC
* * * * * * * * * *
2879234 TTTTCTTGTTAGTGGATGGCTTTCGCTCCATGTTTCCCAAGGTAAACATGCAATTATGATCTATT
1 TTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTCCCGATGCAAACATTCAATTATGATCTGTT
* * * * * * * *
2879299 TGAACTAGAAA-CAAAGAAAATTCAGTTCAAAGTTATTTATAAAGTTATAAAACCATTTAAAGCG
66 TTAACCAGAAATGAAA-AAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAAGTG
* * * *
2879363 AGTAACAAGGCCTTTGAAGGCATGAGTGTCTATCAATAGAC
130 AGTAACAAGGCATTCGAAGGCATGAGTGACTATAAATAGAC
* * * * * * ** *
2879404 TTTGCTTGTCAATGGATAGCTTTCACATGACATTTCCTG-TGTGAACATTCAATTATGATTTGTT
1 TTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTCCCGATGCAAACATTCAATTATGATCTGTT
* * * * * * * ***
2879468 TTAACCAAAAATGTAAAAAAAATAAATTTCAATTGATTTATAAAGTTATAAAACCACTTAAAACA
66 TTAACCAGAAATG-AAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAAGTG
* * * *
2879533 AGTGACAAGGCATTCAAAGGCATGAATGACTATAAATGGAC
130 AGTAACAAGGCATTCGAAGGCATGAGTGACTATAAATAGAC
* * * * * * *
2879574 TTTTCTTGTGAATGGATAGCTTTCGCTTCACATTT-CCGAAAGCAAACGTTCAATTATAATCTGT
1 TTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTCCCG-ATGCAAACATTCAATTATGATCTGT
* * * * * * * * *
2879638 ATGAACCAGAAA-CAAAAAACATTTAGTTTAAAATCATTTATATAGTCATAAAATCATTTAAAGC
65 TTTAACCAGAAATGAAAAAA-ATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAAGT
* * * *
2879702 GAGTAACAAGGCCTTCAAAGGCATGAGTGACTATAATTGGAC
129 GAGTAACAAGGCATTCGAAGGCATGAGTGACTATAAATAGAC
* * * ** * *
2879744 TTTTCTTGTCAATGGATGGCATTCGCTTCATGTTTCCTTATGCGAACATTCAATTATGATATGTT
1 TTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTCCCGATGCAAACATTCAATTATGATCTGTT
* *
2879809 TTAACAAGAAATGTAAAAAAATTCAGTTTAAAATCATTTAT-AAGTTAT-AAACCATTTAAAGTG
66 TTAACCAGAAATG-AAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAAGTG
* * * *
2879872 AGTAACAAGGCCTTTGAA-GCATGAGCGACTATAAATTGAC
130 AGTAACAAGGCATTCGAAGGCATGAGTGACTATAAATAGAC
* * * * * * *
2879912 TTTTATTGTCAATTGATGGCTTTCATTTCACATTTCCTGATGCGAACATTCAATTATGATTTGTT
1 TTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTCCCGATGCAAACATTCAATTATGATCTGTT
** * * * * * * * **
2879977 TTAAATAGAAATGTAAAAAAATTCAGTTTCAATTGATTTATAAAGTCATAAAAGCACTTAAAACG
66 TTAACCAGAAATG-AAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAAGTG
* * * *
2880042 AGTGACAAGACATTCGAAGGCATGAATGACTATAAATGGAC
130 AGTAACAAGGCATTCGAAGGCATGAGTGACTATAAATAGAC
* * * * *
2880083 TTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAATGCAAACATCCAATTGTGATCCGTT
1 TTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTCCCGATGCAAACATTCAATTATGATCTGTT
* ** *
2880148 TTAACCACAAATGAAAAACAATTCAATTTAAAATCATTTTATAAAGTTATAAAACCACATAAAAT
66 TTAACCAGAAATGAAAAA-AATTCAATTTAAAATCA-TTTATAAAGTTATAAAACCATTTAAAGT
* * *
2880213 GAGTGA-TAGAGCATTCAAAGGCATGAGTGACTATAAAT-GAAC
129 GAGTAACAAG-GCATTCGAAGGCATGAGTGACTATAAATAG-AC
* * * * * *
2880255 TTTTCTTGTCAATGGGTGGCTTTTACTGCACGTTTCTCGATGCAAACATCCAATTATGATGTGTT
1 TTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTCCCGATGCAAACATTCAATTATGATCTGTT
* * * * **
2880320 TTAACCAAAAATGAAAAAAAAATTGAA-TCAAAATAATTTATAAAACTATAAAACCATTT-AA--
66 TTAACCAGAAATG--AAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAAGT
* * ** ** *
2880381 -AGT----AGGCTTTTGTCGGCATGAGCCACTATGAATAGAC
129 GAGTAACAAGGCATTCGAAGGCATGAGTGACTATAAATAGAC
* * * * *
2880418 TTTTCTTGTCAATGGATGGCTTTTACTTCATGTTTCCCGATGCGAACATTGAATTATGATATGTT
1 TTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTCCCGATGCAAACATTCAATTATGATCTGTT
* * * * * *
2880483 TTAGCTAGAAATGAAAGAAAGTTTAATTTAAAATCATTTATAAAGTTATAGATCCATTTAAAGTG
66 TTAACCAGAAATGAAA-AAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAAGTG
* * *
2880548 AGTAACAAAGCCTTCAAAGGCATGAGTGACTATAAATAGAC
130 AGTAACAAGGCATTCGAAGGCATGAGTGACTATAAATAGAC
* * * ** * * *
2880589 TTTTCTTATCAATGGATAGCTATT-ACTTCATGTTTCTTGATGCAAACATCCAATGATGAGCTGT
1 TTTTCTTGTCAATGGATGGCT-TTCACTTCACGTTTCCCGATGCAAACATTCAATTATGATCTGT
* *
2880653 TTTAACCAAAAATGAAAAAATATTCAATTTAAAATGATTTATAAAGTTATAAAACCA
65 TTTAACCAGAAATGAAAAAA-ATTCAATTTAAAATCATTTATAAAGTTATAAAACCA
2880710 CTCAAAACGA
Statistics
Matches: 1191, Mismatches: 253, Indels: 63
0.79 0.17 0.04
Matches are distributed among these distances:
161 3 0.00
162 7 0.01
163 115 0.10
164 5 0.00
167 6 0.01
168 111 0.09
169 74 0.06
170 429 0.36
171 290 0.24
172 140 0.12
173 6 0.01
174 5 0.00
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.33
Consensus pattern (170 bp):
TTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTCCCGATGCAAACATTCAATTATGATCTGTT
TTAACCAGAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAAGTGA
GTAACAAGGCATTCGAAGGCATGAGTGACTATAAATAGAC
Found at i:2881042 original size:171 final size:170
Alignment explanation
Indices: 2880779--2882349 Score: 1297
Period size: 171 Copynumber: 9.2 Consensus size: 170
2880769 GAAAGAAAAC
* * *
2880779 TCAATTTAAAATCATTTATAAAGTTATAAAATCACTTAAAGTGAGTAA-ATAGGCTTTCGAAGGC
1 TCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGTGAGTAATA-AAGCCTTCGAAGGC
* * * * * * *
2880843 ATGAGTGACAAAAAATAGACTTTTCTTGTAAATGCATAGCTTTCGCTTCATGTTTCTCAATACCA
65 ATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAAT-CGA
* * *
2880908 ACATTGAATTATGATATGTTTTAGCTAAAAAGGAAAGAAAATTT
129 ACATTCAATTATGATCTGTTTTAACTAAAAAGGAAA-AAAA-TT
* * * *
2880952 TAAATTTAACATCATTTATAAAGTTATAAAACCACTTAAAGT-A-TAATAAAGCCTTCAAAGGTA
1 TCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGTGAGTAATAAAGCCTTCGAAGGCA
* * * * *
2881015 TGAGTGACTATAAATGCACTTTTCTTGTCAATGAATGG-TTTCGCTTCACGTTTCTCGATGTGAA
66 TGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAAT-CGAA
* * * *
2881079 CATCCAATGATGATCTGTTTTAACAAAAAATGAAAAAAA--
130 CATTCAATTATGATCTGTTTTAACTAAAAAGGAAAAAAATT
* * * * * * **
2881118 TCAATTGAAAATCATTTATAAAGTTATAAAACCACTTAAAATGAGTGACAACGCATTTAAAGGCA
1 TCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGTGAGTAATAAAGCCTTCGAAGGCA
* *
2881183 TGAGTGACTATAAATGAAC-TTTCTTGT-AATGGATGGCTTTCGCTTCACGTTTCTCGAAGT-GA
66 TGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTC-AA-TCGA
* ** * *
2881245 ACATTTAATTATGATCTACTTTGACT----A-GAAAAAAA-A
129 ACATTCAATTATGATCTGTTTTAACTAAAAAGGAAAAAAATT
** * * * * * * *
2881281 TCAATCCAAACTCATTTATAAAATTATAAAACTATTTAAAGCGAGTAACAAGGCCTTCGAAGGCA
1 TCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGTGAGTAATAAAGCCTTCGAAGGCA
* * * * * *
2881346 TGAATGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTGT-GCTTTATGGTTTTTGAGGT-G
66 TGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTT-TCGCTTCAT-GTTTCTCA-ATCG
* * * * * *
2881409 AACATTCAATTATGATATGTTTTAATTAGAAATGTACAAAATT
128 AACATTCAATTATGATCTGTTTTAACTAAAAAGGAAAAAAATT
* * *
2881452 TCAATTTAAAATCATTTATAAAGTTATAAAACCGCTTAAAGTGAGTAACT-AAGCTTTCAAAGGC
1 TCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGTGAGTAA-TAAAGCCTTCGAAGGC
* *
2881516 ATGAGTGACTATAGATGGACTTTTCTTGTCAACGGATGGCTTTCGCTTCATGTTT-TCCAAT-GC
65 ATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCT-CAATCG-
* **
2881579 AAGCATTCAATTATGATCTGTTTGAACTATAAATGAAAAAAAAAATT
128 AA-CATTCAATTATGATCTGTTTTAACTA-AAA--AGGAAAAAAATT
* * * * *
2881626 T-AGTTCAAAATCATATATAAAGTTATAAAACCATTTAAAGCGAGTAA-AAAGGCCTTCGAAGGC
1 TCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGTGAGTAATAAA-GCCTTCGAAGGC
* * * * ** * **
2881689 ATGATTGGCTATAAATGGACTTTTCTTGTCAATGGAT-GCTTTTGATTCACATTTC-CTAGTAAA
65 ATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTC-AAT-CG
* * * *
2881752 AACATCCAATTATGAT-TCGTTTTAACCAGAAATG-AAAAAATGT
128 AACATTCAATTATGATCT-GTTTTAACTAAAAAGGAAAAAAAT-T
* * * * * **
2881795 TCAATTTAAAATCATTTTATAAAGTTATAAGACCACTTAAAATGAGTGATAAGGCATTTAAAGGC
1 TCAATTTAAAATCA-TTTATAAAGTTATAAAACCACTTAAAGTGAGTAATAAAGCCTTCGAAGGC
* * * * * * ** *
2881860 ATAAGTGACTACAACTAGACTTTTCTTCTCAATGGGTGGCTTTCG-TTACATGTTTCTTGATGCA
65 ATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTT-CATGTTTCTCAAT-CG
* * * * *
2881924 AACATCCAATTTTGATGTGTTATAAC-AAAAATGGAAAAAACTT
128 AACATTCAATTATGATCTGTTTTAACTAAAAA-GGAAAAAAATT
* * * * * *
2881967 TCAATTTAAAATAATTTAT-AAGACTGTAAAACTATTTAATGCT-AGTAACT--AGCCTTTCGAA
1 TCAATTTAAAATCATTTATAAAG-TTATAAAACCACTTAAAG-TGAGTAA-TAAAGCC-TTCGAA
* * * * * *
2882028 GGCATGAGCGACTATAAATGTACTTTTCTTGTCAATGGATAGCTTTTGTCTTCACGTTTCCCAAT
62 GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCG-CTTCATGTTTCTCAAT
* * * * * *
2882093 GGAACATTGC-ATTGTTATCTGTTTTAGCTAGAAATGAAAGAAAA-T
126 CGAACATT-CAATTATGATCTGTTTTAACTAAAAAGGAAA-AAAATT
* * * *
2882138 TCAATTTAAAATCATTTGTAAAGTTATAAAACCATTTAAAGTGAGTAATAAGGCCTTTGAAGGCA
1 TCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGTGAGTAATAAAGCCTTCGAAGGCA
* *
2882203 TGAGTGACTATAAATGGACTTTTCTTCTCAATGGATGGCTTTCGTTTCACT-TTTCTCAATGCGA
66 TGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCA-TGTTTCTCAAT-CGA
* * * *
2882267 ACATTCAATTGTGATCTGTTTTAACCAGAAATGTAAAAAAATT
129 ACATTCAATTATGATCTGTTTTAACTA-AAAAGGAAAAAAATT
* * * *
2882310 T-AATTTAAAATCATTTCTAAAGTTTTAAAACAACATAAAG
1 TCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAG
2882350 CAAGTAACTA
Statistics
Matches: 1112, Mismatches: 225, Indels: 124
0.76 0.15 0.08
Matches are distributed among these distances:
162 8 0.01
163 71 0.06
164 8 0.01
165 41 0.04
166 52 0.05
167 48 0.04
168 40 0.04
169 12 0.01
170 93 0.08
171 470 0.42
172 127 0.11
173 133 0.12
174 9 0.01
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (170 bp):
TCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGTGAGTAATAAAGCCTTCGAAGGCA
TGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAATCGAAC
ATTCAATTATGATCTGTTTTAACTAAAAAGGAAAAAAATT
Found at i:2882162 original size:686 final size:670
Alignment explanation
Indices: 2880749--2882349 Score: 1787
Period size: 686 Copynumber: 2.4 Consensus size: 670
2880739 TATAAATTGC
* * * *
2880749 GATCTGTTTTAGCCATAAATGAAAGAAAACTCAATTTAAAATCATTTATAAAGTTATAAAATCAC
1 GATCTGTTTTAGCTAGAAATGAAAGAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCAC
* * * * * *
2880814 TTAAAGTGAGTAAATAGGCTTTCGAAGGCATGAGTGACAAAAAATAGACTTTTCTTGTAAATGCA
66 TTAAAGTGAGT-AATAAGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGA
* * * * * *
2880879 TAGCTTTCGCTTCATG-TTTCTCAATACCAACATTGAATTATGATATGTTTTAGCTAAAAAGGAA
130 TGGCTTTCGCTTCATGTTTTCTCAAT-GCAACATTCAATTATGATCTGTTTTAACT-AAAATGAA
* * * *
2880943 AGAAAATTTTAAATTTAACATCATTTATAAAGTTATAAAACCACTTAAAGTATAATAAAGCCTTC
193 AAAAAAATTT-AATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGGATAATAAAGCCTTC
* * * *
2881008 AAAGGTATGAGTGACTATAAATGCACTTTTCTTGTCAATGAATGGTTTCGCTTCACGTTTCTCGA
257 AAAGGCATGAGTGACTATAAATGCACTTTTCTTGTCAATGAATGCTTTCGATTCACATTTCTCGA
*
2881073 TGTGAACATCCAATGATGATCTGTTTTAACAAAAAATGAAAAAAATCAATTGAAAATCATTTATA
322 TGTAAACATCCAATGATGATCTGTTTTAACAAAAAATGAAAAAAATCAATTGAAAATCATTTATA
* *
2881138 AAGTTATAAAACCACTTAAAATGAGTGACAACGCATTTAAAGGCATGAGTGACTATAAATGAACT
387 AAGTTATAAAACCACTTAAAATGAGTGACAACGCATTTAAAGGCATAAGTGACTACAAATGAACT
* ** ** *
2881203 TTCTTGTAATGGATGGCTTTCGCTTCACGTTTCTCGAAGTGAACATTTAATTATGATCTACTTTG
452 TTCTTCTAATGGATGGCTTTCGCTTCACGTTTCTCGAAGCAAACATCCAATTATGATCTACTTTA
* * * * *
2881268 ACTAGAAAAAAAATCAATCCAAACTCATTTATAAAATTATAAAACTATTTAAAGCGAGTAACAAG
517 ACAAAAAAAAAAATCAATCCAAAATAATTTATAAAACTATAAAACTATTTAAAGCGAGTAACAAG
* * * *
2881333 GCCTTCGAAGGCATGAATGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTGTGCTTTATGG
582 GCCTTCGAAGGCATGAACGACTATAAATGAACTTTTCTTGTCAATGGATAGCTTGTGCTTCATCG
***
2881398 TTTTTGAGGTGAACATTCAATTAT
647 TTTCCAAGGTGAACATTCAATTAT
* ** * * *
2881422 GATATGTTTTAATTAGAAATGTACA-AAATTTCAATTTAAAATCATTTATAAAGTTATAAAACCG
1 GATCTGTTTTAGCTAGAAATG-AAAGAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCA
* * *
2881486 CTTAAAGTGAGTAACTAAGCTTTCAAAGGCATGAGTGACTATAGATGGACTTTTCTTGTCAACGG
65 CTTAAAGTGAGTAA-TAAGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGG
*
2881551 ATGGCTTTCGCTTCATGTTTTC-CAATGCAAGCATTCAATTATGATCTGTTTGAACTATAAATGA
129 ATGGCTTTCGCTTCATGTTTTCTCAATGCAA-CATTCAATTATGATCTGTTTTAACTA-AAATG-
* * * *
2881615 AAAAAAAAATTTAGTTCAAAATCATATATAAAGTTATAAAACCATTTAAAGCGAGTAA-AAAGGC
191 AAAAAAAAATTTAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAG-GA-TAATAAA-GC
* * * * * *
2881679 CTTCGAAGGCATGATTGGCTATAAATGGACTTTTCTTGTCAATGGATGCTTTTGATTCACATTTC
253 CTTCAAAGGCATGAGTGACTATAAATGCACTTTTCTTGTCAATGAATGCTTTCGATTCACATTTC
* * * * * *
2881744 -CTA-GTAAAAACATCCAATTATGAT-TCGTTTTAACCAGAAATGAAAAAATGTTCAATTTAAAA
318 TCGATGT--AAACATCCAATGATGATCT-GTTTTAACAAAAAATGAAAAAA--ATCAATTGAAAA
* * *
2881806 TCATTTTATAAAGTTATAAGACCACTTAAAATGAGTGATAAGGCATTTAAAGGCATAAGTGACTA
378 TCA-TTTATAAAGTTATAAAACCACTTAAAATGAGTGACAACGCATTTAAAGGCATAAGTGACTA
* * * * *
2881871 CAACT-AGACTTTTCTTCTCAATGGGTGGCTTTCG-TTACATGTTTCTTGATGCAAACATCCAAT
442 CAAATGA-AC-TTTCTTCT-AATGGATGGCTTTCGCTT-CACGTTTCTCGAAGCAAACATCCAAT
* * * ** * *
2881934 TTTGATGT-GTTATAACAAAAATGGAAAAAACTTTCAATTTAAAATAATTTATAAGACTGTAAAA
503 TATGATCTACTT-TAACAAAAA---AAAAAA---TCAATCCAAAATAATTTATAAAACTATAAAA
* * * * *
2881998 CTATTTAATGCTAGTAACTA-GCCTTTCGAAGGCATGAGCGACTATAAATGTACTTTTCTTGTCA
561 CTATTTAAAGCGAGTAACAAGGCC-TTCGAAGGCATGAACGACTATAAATGAACTTTTCTTGTCA
* * *
2882062 ATGGATAGCTTTTGTCTTCA-CGTTTCCCAATG-GAACATTGC-ATTGT
625 ATGGATAGCTTGTG-CTTCATCGTTT-CCAAGGTGAACATT-CAATTAT
* * *
2882108 TATCTGTTTTAGCTAGAAATGAAAGAAAATTCAATTTAAAATCATTTGTAAAGTTATAAAACCAT
1 GATCTGTTTTAGCTAGAAATGAAAGAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCAC
*
2882173 TTAAAGTGAGTAATAAGGCCTTT-GAAGGCATGAGTGACTATAAATGGACTTTTCTTCTCAATGG
66 TTAAAGTGAGTAATAA-G-CTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGG
* * * *
2882237 ATGGCTTTCGTTTCA-CTTTTCTCAATGCGAACATTCAATTGTGATCTGTTTTAACCAGAAATG-
129 ATGGCTTTCGCTTCATGTTTTCTCAATGC-AACATTCAATTATGATCTGTTTTAACTA-AAATGA
* * * * *
2882300 TAAAAAAATTTAATTTAAAATCATTTCTAAAGTTTTAAAACAACATAAAG
192 AAAAAAAATTTAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAG
2882350 CAAGTAACTA
Statistics
Matches: 771, Mismatches: 122, Indels: 59
0.81 0.13 0.06
Matches are distributed among these distances:
672 6 0.01
673 185 0.24
674 23 0.03
675 95 0.12
677 14 0.02
678 62 0.08
679 11 0.01
680 45 0.06
683 6 0.01
684 41 0.05
685 13 0.02
686 257 0.33
687 13 0.02
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (670 bp):
GATCTGTTTTAGCTAGAAATGAAAGAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCAC
TTAAAGTGAGTAATAAGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGAT
GGCTTTCGCTTCATGTTTTCTCAATGCAACATTCAATTATGATCTGTTTTAACTAAAATGAAAAA
AAAATTTAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGGATAATAAAGCCTTCAAAG
GCATGAGTGACTATAAATGCACTTTTCTTGTCAATGAATGCTTTCGATTCACATTTCTCGATGTA
AACATCCAATGATGATCTGTTTTAACAAAAAATGAAAAAAATCAATTGAAAATCATTTATAAAGT
TATAAAACCACTTAAAATGAGTGACAACGCATTTAAAGGCATAAGTGACTACAAATGAACTTTCT
TCTAATGGATGGCTTTCGCTTCACGTTTCTCGAAGCAAACATCCAATTATGATCTACTTTAACAA
AAAAAAAAATCAATCCAAAATAATTTATAAAACTATAAAACTATTTAAAGCGAGTAACAAGGCCT
TCGAAGGCATGAACGACTATAAATGAACTTTTCTTGTCAATGGATAGCTTGTGCTTCATCGTTTC
CAAGGTGAACATTCAATTAT
Found at i:2882191 original size:342 final size:337
Alignment explanation
Indices: 2880749--2882367 Score: 1533
Period size: 342 Copynumber: 4.8 Consensus size: 337
2880739 TATAAATTGC
* * * *
2880749 GATCTGTTTTAGCCATAAATGAAAGAAAACTCAATTTAAAATCATTTATAAAGTTATAAAATCAC
1 GATCTGTTTTAACCAGAAATGAAA-AAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCAC
* * * * *
2880814 TTAAAGTGAGTAA-ATAGGCTTTCGAAGGCATGAGTGACAAAAAATAGACTTTTCTTGTAAATGC
65 TTAAAGTGAGTAATA-AGGCTTT-AAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGG
* * * * * *
2880878 ATAGCTTTCGCTTCATGTTTCTCAATACCAACATTGAATTATGATATGTTTTAGCTAAAAA-GGA
128 ATGGCTTTCGCTTCATGTTTCTCAATGCAAACATTCAATTATGATCTG-TTTAAC-AAAAATGGA
* * * * *
2880942 AAGAAAATTTTAAATTTAACATCATTTATAAAGTTATAAAACCACTTAAAG-TA-TAATAAAGCC
191 AA-AAAA-TTT-AATTTAAAATCATTTATAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCC
* * * * * * *
2881005 TTCAAAGGTATGAGTGACTATAAATGCACTTTTCTTGTCAATGAATGGTTTCGCTTCACGTTTCT
253 TTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGCTTTTGCTTCACGTTTCC
* *
2881070 CGATGTGAACATCCAATGAT
318 CAATGTGAACATCCAATTAT
* * *
2881090 GATCTGTTTTAACAAAAAATGAAAAAAA-TCAATTGAAAATCATTTATAAAGTTATAAAACCACT
1 GATCTGTTTTAACCAGAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACT
* * * *
2881154 TAAAATGAGTGACAACGCATTTAAAGGCATGAGTGACTATAAAT-GAAC-TTTCTTGT-AATGGA
66 TAAAGTGAGTAATAAGGC-TTTAAAGGCATGAGTGACTATAAATAG-ACTTTTCTTGTCAATGGA
* * * * *
2881216 TGGCTTTCGCTTCACGTTTCTCGAAGTG--AACATTTAATTATGATCTACTTTGAC-----TAGA
129 TGGCTTTCGCTTCATGTTTCTC-AA-TGCAAACATTCAATTATGATCT-GTTTAACAAAAATGGA
* * ** * * *
2881274 AAAAAAATCAATCCAAACTCATTTATAAAATTATAAAACTATTTAAAGCGAGTAACAAGGCCTTC
191 AAAAAATTTAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCCTTC
* * * * **
2881339 GAAGGCATGAATGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTGTGCTTTATGGTTT-TT
256 GAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGAT-GCTTTTGCTTCA-CGTTTCCC
* * *
2881403 GAGGTGAACATTCAATTAT
319 AATGTGAACATCCAATTAT
* ** * * *
2881422 GATATGTTTTAATTAGAAATGTACAAAATTTCAATTTAAAATCATTTATAAAGTTATAAAACCGC
1 GATCTGTTTTAACCAGAAATG-AAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCAC
* * *
2881487 TTAAAGTGAGTAACTAA-GCTTTCAAAGGCATGAGTGACTATAGATGGACTTTTCTTGTCAACGG
65 TTAAAGTGAGTAA-TAAGGCTTT-AAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGG
* *
2881551 ATGGCTTTCGCTTCATGTTT-TCCAATGCAAGCATTCAATTATGATCTGTTTGAACTATAAATGA
128 ATGGCTTTCGCTTCATGTTTCT-CAATGCAAACATTCAATTATGATCTGTTT-AAC-AAAAATG-
* * * * *
2881615 AAAAAAAAATTTAGTTCAAAATCATATATAAAGTTATAAAACCATTTAAAGCGAGTAAAAAGGCC
189 -GAAAAAAATTTAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCC
* * * * *
2881680 TTCGAAGGCATGATTGGCTATAAATGGACTTTTCTTGTCAATGGATGCTTTTGATTCACATTTCC
253 TTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGCTTTTGCTTCACGTTTCC
* * ***
2881745 TAGTAAAAACATCCAATTAT
318 CAATGTGAACATCCAATTAT
* *
2881765 GAT-TCGTTTTAACCAGAAATGAAAAAATGTTCAATTTAAAATCATTTTATAAAGTTATAAGACC
1 GATCT-GTTTTAACCAGAAATGAAAAAA-ATTCAATTTAAAATCA-TTTATAAAGTTATAAAACC
* * * * * *
2881829 ACTTAAAATGAGTGATAAGGCATTTAAAGGCATAAGTGACTACAACTAGACTTTTCTTCTCAATG
63 ACTTAAAGTGAGTAATAAGGC-TTTAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATG
* ** * * *
2881894 GGTGGCTTTCG-TTACATGTTTCTTGATGCAAACATCCAATTTTGATGTGTTATAACAAAAATGG
127 GATGGCTTTCGCTT-CATGTTTCTCAATGCAAACATTCAATTATGATCTGTT-TAACAAAAATGG
* * * * * * * *
2881958 AAAAAACTTTCAATTTAAAATAATTTAT-AAGACTGTAAAACTATTTAATGCTAGTAACTA-GCC
190 AAAAAAATTT-AATTTAAAATCATTTATAAAG-TTATAAAACCATTTAAAGCGAGTAACAAGGCC
* *
2882021 TTTCGAAGGCATGAGCGACTATAAATGTACTTTTCTTGTCAATGGATAGCTTTTGTCTTCACGTT
253 -TTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGAT-GCTTTTG-CTTCACGTT
* *
2882086 TCCCAATG-GAACATTGC-ATTGT
315 TCCCAATGTGAACA-TCCAATTAT
* * * * *
2882108 TATCTGTTTTAGCTAGAAATGAAAGAAAATTCAATTTAAAATCATTTGTAAAGTTATAAAACCAT
1 GATCTGTTTTAACCAGAAATGAAA-AAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCAC
* * *
2882173 TTAAAGTGAGTAATAAGGCCTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTCTCAATGGA
65 TTAAAGTGAGTAATAAGG-CTTTAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGA
* * * * *
2882238 TGGCTTTCGTTTCACT-TTTCTCAATGCGAACATTCAATTGTGATCTGTTTTAACCAGAAATGTA
129 TGGCTTTCGCTTCA-TGTTTCTCAATGCAAACATTCAATTATGATCTG-TTTAA-CAAAAATGGA
* * * ** * * *
2882302 AAAAAATTTAATTTAAAATCATTTCTAAAGTTTTAAAACAACATAAAGCAAGTAACTAGGCTTTC
191 AAAAAATTTAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCCTTC
2882367 G
256 G
2882368 TTTCACGTTT
Statistics
Matches: 1050, Mismatches: 174, Indels: 107
0.79 0.13 0.08
Matches are distributed among these distances:
329 32 0.03
330 2 0.00
331 53 0.05
332 46 0.04
333 12 0.01
334 71 0.07
335 17 0.02
336 42 0.04
337 45 0.04
338 11 0.01
339 69 0.07
340 8 0.01
341 36 0.03
342 238 0.23
343 141 0.13
344 222 0.21
345 5 0.00
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (337 bp):
GATCTGTTTTAACCAGAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACT
TAAAGTGAGTAATAAGGCTTTAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATG
GCTTTCGCTTCATGTTTCTCAATGCAAACATTCAATTATGATCTGTTTAACAAAAATGGAAAAAA
ATTTAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCCTTCGAAGG
CATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGCTTTTGCTTCACGTTTCCCAATGTGA
ACATCCAATTAT
Found at i:2882664 original size:172 final size:171
Alignment explanation
Indices: 2882360--2883021 Score: 610
Period size: 172 Copynumber: 3.9 Consensus size: 171
2882350 CAAGTAACTA
* * * * * *
2882360 GGCTTTCGTTTCACGTTTCCCAATGCAAACATCCAATTGTGATATGTTTGAACCAAAAATGAAAA
1 GGCTTTCCTTACATGTTTCCTAATGCAAACATCCAATTATGATATGTTTTAACCAAAAATGAAAA
* * * * *
2882425 AC-AATTCAATTTAAAATCATTTTATAAAGCTATAAAACCACTTAAAATGAGTGACAGGGCATTC
66 ACAAATTC-ATTTAAAAT-AATTTATAAAGCTATAAAACCACTTAAAGTGAGTAACAAGGCCTTC
* * *
2882489 GAAGGTATGAGTGACTACAAATAGACTTTTCTTGTCAATGGGT
129 GAAGGTATGAGTGACTATAAATAGACTTTTCTTATCAATGGAT
* * *
2882532 GGCTTTCATTACATGTTTCCTAATGCAAACATCCAATTATGATGTATTTTAA-CAATAAATGAAA
1 GGCTTTCCTTACATGTTTCCTAATGCAAACATCCAATTATGATATGTTTTAACCAA-AAATGAAA
* * * * *
2882596 AACAAATTCGATTTGAAATAATTTAT-AAGACTATTAAACCACTTAAAGCGAGTAATAATGCCTT
65 AACAAATTC-ATTTAAAATAATTTATAAAG-CTATAAAACCACTTAAAGTGAGTAACAAGGCCTT
* *
2882660 CGAAGGCATGAGTGACTATGAAT-GTACTTTTCTTATCAATGGAT
128 CGAAGGTATGAGTGACTATAAATAG-ACTTTTCTTATCAATGGAT
* * * *
2882704 GGCTTTCGCTTCACA--TTTCTTGAAGTG--AACATTCAATTATGATATGCTTTAACCAGAAA--
1 GGCTTTC-CTT-ACATGTTTCCT-AA-TGCAAACATCCAATTATGATATGTTTTAACCAAAAATG
* * * * * * * * *
2882763 CAAAAGAAATTCAATTAAAATCATTTCTAAAGTTATAAAACCATTTAAAGTAAGTAACGAGGCCT
62 AAAAACAAATTCATTTAAAATAATTTATAAAGCTATAAAACCACTTAAAGTGAGTAACAAGGCCT
2882828 TCGAAGGTATGAGTGACTATAAATAGACTTTTCTTATCAATGGAT
127 TCGAAGGTATGAGTGACTATAAATAGACTTTTCTTATCAATGGAT
* ** * * * * **
2882873 GACTTTCCTTTTATGTTTCTTGATGCGAACATCCAATGATGAGCTGTTTTAACCAAAAAATGAAA
1 GGCTTTCCTTACATGTTTCCTAATGCAAACATCCAATTATGATATGTTTTAACC-AAAAATGAAA
* * * * * * * * *
2882938 AA-ACATTCAGTTTGAAAA-GATTTATAAAGTTGTAAAACCACTCAAAATGAGTGAGAAGGCATT
65 AACAAATTCA-TTT-AAAATAATTTATAAAGCTATAAAACCACTTAAAGTGAGTAACAAGGCCTT
* *
2883001 CGAAGGTATGAGCGATTATAA
128 CGAAGGTATGAGTGACTATAA
2883022 NNNNNNNNNN
Statistics
Matches: 397, Mismatches: 73, Indels: 40
0.78 0.14 0.08
Matches are distributed among these distances:
167 3 0.01
168 4 0.01
169 112 0.28
170 18 0.05
171 13 0.03
172 219 0.55
173 23 0.06
174 5 0.01
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.32
Consensus pattern (171 bp):
GGCTTTCCTTACATGTTTCCTAATGCAAACATCCAATTATGATATGTTTTAACCAAAAATGAAAA
ACAAATTCATTTAAAATAATTTATAAAGCTATAAAACCACTTAAAGTGAGTAACAAGGCCTTCGA
AGGTATGAGTGACTATAAATAGACTTTTCTTATCAATGGAT
Found at i:2882968 original size:635 final size:635
Alignment explanation
Indices: 2881751--2882975 Score: 1623
Period size: 635 Copynumber: 1.9 Consensus size: 635
2881741 TTCCTAGTAA
* * *
2881751 AAACATCCAATTATGATTCGTTTTAACCAGAAATGAAAAAATGTTCAATTTAAAATCATTTTATA
1 AAACATCCAATTATGATTCGTTTGAACCAAAAATGAAAAAATATTCAATTTAAAATCATTTTATA
* * * * *
2881816 AAGTTATAAGACCACTTAAAATGAGTGATAAGGCATTTAAAGGCATAAGTGACTACAACTAGACT
66 AAGCTATAAAACCACTTAAAATGAGTGACAAGGCATTCAAAGGCATAAGTGACTACAAATAGACT
* * * * *
2881881 TTTCTTCTCAATGGGTGGCTTTCGTTACATGTTTCTTGATGCAAACATCCAATTTTGATGTGTTA
131 TTTCTTCTCAATGGGTGGCTTTCATTACATGTTTCCTAATGCAAACATCCAATTATGATGTATTA
** * * * * *
2881946 TAACAAAAATGGAAAAAACTTTCAATTTAAAATAATTTATAAGACTGTAAAACTATTTAATGCTA
196 TAACAAAAATGGAAAAAAAATTCAATTTAAAATAATTTATAAGACTATAAAACCACTTAAAGCGA
* *
2882011 GTAACTAGCCTTTCGAAGGCATGAGCGACTATAAATGTACTTTTCTTGTCAATGGATAGCTTTTG
261 GTAACTAGCCTTTCGAAGGCATGAGCGACTATAAATGTACTTTTCTTATCAATGGATAGCTTTCG
* * * * * * * **
2882076 TCTTCACGTTTCCCAATGGAACATTGCATTGTTATCTGTTTTAGCTAGAAATGAAAGAAAATTCA
326 TCTTCACATTTCCCAATGGAACATTGCATTATGATATGCTTTAACCAGAAACAAAAGAAAATTCA
* * * *
2882141 ATTTAAAATCATTTGTAAAGTTATAAAACCATTTAAAGTGAGTAATAAGGCCTTTGAAGGCATGA
391 ATTTAAAATCATTTCTAAAGTTATAAAACCATTTAAAGTAAGTAACAAGGCCTTCGAAGGCATGA
* * * *
2882206 GTGACTATAAATGGACTTTTCTTCTCAATGGATGGCTTTCGTTTCACTTTTCTCAATGCGAACAT
456 GTGACTATAAATAGACTTTTCTTATCAATGGATGACTTTCCTTTCACTTTTCTCAATGCGAACAT
* * * * * *
2882271 TCAATTGTGATCTGTTTTAACCAGAAATGTAAAAAAATTTAATTTAAAATCATTTCTAAAGTTTT
521 CCAATTGTGAGCTGTTTTAACCAAAAATGTAAAAAAATTCAATTTAAAATCATTTATAAAGTTGT
2882336 AAAACAACATAAAGCAAGTAACTAGGCTTTCGTTTCACGTTTCCCAATGC
586 AAAACAACATAAAGCAAGTAACTAGGCTTTCGTTTCACGTTTCCCAATGC
*
2882386 AAACATCCAATTGTGATAT-GTTTGAACCAAAAATGAAAAACA-ATTCAATTTAAAATCATTTTA
1 AAACATCCAATTATGAT-TCGTTTGAACCAAAAATGAAAAA-ATATTCAATTTAAAATCATTTTA
* * * *
2882449 TAAAGCTATAAAACCACTTAAAATGAGTGACAGGGCATTCGAAGGTATGAGTGACTACAAATAGA
64 TAAAGCTATAAAACCACTTAAAATGAGTGACAAGGCATTCAAAGGCATAAGTGACTACAAATAGA
*
2882514 CTTTTCTTGTCAATGGGTGGCTTTCATTACATGTTTCCTAATGCAAACATCCAATTATGATGTAT
129 CTTTTCTTCTCAATGGGTGGCTTTCATTACATGTTTCCTAATGCAAACATCCAATTATGATGTAT
* * * *
2882579 TTTAACAATAAAT-GAAAAACAAATTCGATTTGAAATAATTTATAAGACTATTAAACCACTTAAA
194 TATAACAA-AAATGGAAAAA-AAATTCAATTTAAAATAATTTATAAGACTATAAAACCACTTAAA
* * *
2882643 GCGAGTAA-TAATGCC-TTCGAAGGCATGAGTGACTATGAATGTACTTTTCTTATCAATGGATGG
257 GCGAGTAACT-A-GCCTTTCGAAGGCATGAGCGACTATAAATGTACTTTTCTTATCAATGGATAG
**
2882706 CTTTCG-CTTCACATTTCTTGAA-GTGAACATT-CAATTATGATATGCTTTAACCAGAAACAAAA
320 CTTTCGTCTTCACATTTC-CCAATG-GAACATTGC-ATTATGATATGCTTTAACCAGAAACAAAA
*
2882768 G-AAATTCAA-TTAAAATCATTTCTAAAGTTATAAAACCATTTAAAGTAAGTAACGAGGCCTTCG
382 GAAAATTCAATTTAAAATCATTTCTAAAGTTATAAAACCATTTAAAGTAAGTAACAAGGCCTTCG
* * **
2882831 AAGGTATGAGTGACTATAAATAGACTTTTCTTATCAATGGATGACTTTCCTTTTA-TGTTTCTTG
447 AAGGCATGAGTGACTATAAATAGACTTTTCTTATCAATGGATGACTTTCCTTTCACT-TTTCTCA
* *
2882895 ATGCGAACATCCAA-TGATGAGCTGTTTTAACCAAAAAATG-AAAAAACATTCAGTTTGAAAA-G
511 ATGCGAACATCCAATTG-TGAGCTGTTTTAACC-AAAAATGTAAAAAA-ATTCAATTT-AAAATC
2882957 ATTTATAAAGTTGTAAAAC
572 ATTTATAAAGTTGTAAAAC
2882976 CACTCAAAAT
Statistics
Matches: 509, Mismatches: 67, Indels: 28
0.84 0.11 0.05
Matches are distributed among these distances:
633 3 0.01
634 136 0.27
635 234 0.46
636 133 0.26
637 3 0.01
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (635 bp):
AAACATCCAATTATGATTCGTTTGAACCAAAAATGAAAAAATATTCAATTTAAAATCATTTTATA
AAGCTATAAAACCACTTAAAATGAGTGACAAGGCATTCAAAGGCATAAGTGACTACAAATAGACT
TTTCTTCTCAATGGGTGGCTTTCATTACATGTTTCCTAATGCAAACATCCAATTATGATGTATTA
TAACAAAAATGGAAAAAAAATTCAATTTAAAATAATTTATAAGACTATAAAACCACTTAAAGCGA
GTAACTAGCCTTTCGAAGGCATGAGCGACTATAAATGTACTTTTCTTATCAATGGATAGCTTTCG
TCTTCACATTTCCCAATGGAACATTGCATTATGATATGCTTTAACCAGAAACAAAAGAAAATTCA
ATTTAAAATCATTTCTAAAGTTATAAAACCATTTAAAGTAAGTAACAAGGCCTTCGAAGGCATGA
GTGACTATAAATAGACTTTTCTTATCAATGGATGACTTTCCTTTCACTTTTCTCAATGCGAACAT
CCAATTGTGAGCTGTTTTAACCAAAAATGTAAAAAAATTCAATTTAAAATCATTTATAAAGTTGT
AAAACAACATAAAGCAAGTAACTAGGCTTTCGTTTCACGTTTCCCAATGC
Found at i:2886078 original size:172 final size:171
Alignment explanation
Indices: 2884997--2888253 Score: 2803
Period size: 171 Copynumber: 19.1 Consensus size: 171
2884987 AATCATATCC
* * * *
2884997 AAAGTTATAAAACCATTTCAAGA-GAGTAACAAGGCCTTTGAAGGCATGAGTGACTATAAATGGA
1 AAAGTTATAAAACCACTT-AAAATGAGTAACAAGGCATTCGAAGGCATGAGTGACTATAAATGGA
* * * ** * *
2885061 CTTTTCTTGTCAATGGATGACTTTCACTTTACGTTTCTCAATGTGAACATCCAATGATGAGT-TG
65 CTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAATGCAAACATTCAATTATGA-TCTG
* **
2885125 TTTGAACCAAAAATG-AAAAAAATTCAATTTAAAAAGATTTAT
129 TTTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTAT
** * *
2885167 AAAGTTATAAAACCACGCAAAACT-AGTGAGCAA-GCATTCAAAGGCATGAGTGACTATAAATGG
1 AAAGTTATAAAACCACTTAAAA-TGAGT-AACAAGGCATTCGAAGGCATGAGTGACTATAAATGG
* * * * ** * * *
2885230 ACTTTTCTTGTCAATAGATGGATTTTGCTTCATGTTTCTTGATGCGAATATTCAATTATGATATG
64 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAATGCAAACATTCAATTATGATCTG
* * * * * * * *
2885295 TTTTAACTAGAAACGAAAAAAAATTTAGTTCAAAATTATTTAA
129 TTTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTAT
* * * * * * * * * * *
2885338 AAAGTTATGAAATCATTTAAAGTGTGTAAGAAGGCCA-TCGAAGGCATCAATGACTATCAGTAGA
1 AAAGTTATAAAACCACTTAAAATGAGTAACAAGG-CATTCGAAGGCATGAGTGACTATAAATGGA
* * ** * * *
2885402 CTTTTCTTGTTAATGGATGGCTTTCGCTTCACATTT-TACAATGTGAGCATTGAATTAAGATCTG
65 CTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCT-CAATGCAAACATTCAATTATGATCTG
* * * *
2885466 TTTTAACTAGAAATGTAAAAAAAAAATCAAGTT-AAATCGATTTAT
129 TTTTAACCAAAAATG--AAAAAAAATTCAATTTAAAATC-ATTTAT
* * * * * * *
2885511 AAAGTTATAAAACTACTTTAAACGAGTGACAAGACATTCGAAGGTATGAGTGACTACAAATGGAC
1 AAAGTTATAAAACCACTTAAAATGAGTAACAAGGCATTCGAAGGCATGAGTGACTATAAATGGAC
* * * * * * * * **
2885576 TTTTCTTGTGAATGGATGGCTTTCACTTTACATTTCTTAGA-GCAAGCATTAAATAATGATCTAC
66 TTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCA-ATGCAAACATTCAATTATGATCTGT
* * *
2885640 TTTAACCAGAAATGAAAAACAAATT-AGTTCAAAATCATTTAT
130 TTTAACCAAAAATGAAAAA-AAATTCAATTTAAAATCATTTAT
* ** * * *
2885682 AAAGTTATAAAACCATTTAAAACAAGTAACAAGGCCTTCAAAGTCAAT-AGTGACTATAAATGGA
1 AAAGTTATAAAACCACTTAAAATGAGTAACAAGGCATTCGAAGGC-ATGAGTGACTATAAATGGA
* * * * *
2885746 CTTTTCTTATCAATGGATGGCTTTCGCTTCACATTTCCCAGTGCGAACATTCACA-TATGATCTG
65 CTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAATGCAAACATTCA-ATTATGATCTG
* * * * *
2885810 TTTTATCTAGAAATGTAAAAAAATTCAATTTAAAATGATTTAT
129 TTTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTAT
* ** * *
2885853 AAAGTTATAAAACAACTTAAAGCGAGTAACTAA-GCTTTCGAAGGCATGAGTGACTATAAGTGGA
1 AAAGTTATAAAACCACTTAAAATGAGTAAC-AAGGCATTCGAAGGCATGAGTGACTATAAATGGA
* * * * * * * **
2885917 CTTTTCTTGTCAATGGATGACTTTCACTTCATGTTTCTCGATG-AAAAAGTCCAATTATCATCCA
65 CTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAATGCAAACA-TTCAATTATGATCTG
* * * * *
2885981 TTTTAACCAAAAATGAGAAAGAATTCAGTTGAAAATAATTTTAT
129 TTTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCA-TTTAT
* * * *
2886025 AAAGTTATAAAATCACTTAAAATGAGTGAA-AAGGCATTCAAAGGTATGAGTGACTATAAATAGA
1 AAAGTTATAAAACCACTTAAAATGAGT-AACAAGGCATTCGAAGGCATGAGTGACTATAAATGGA
* ** * *
2886089 CTTTTCTTCTCAATAGG-TGGCTTTTTCTAT-ACGTTTC-CTAATGCAAACATCCAATTATGATG
65 CTTTTCTTGTCAAT-GGATGGCTTTCGCT-TCACGTTTCTC-AATGCAAACATTCAATTATGATC
* ** *
2886151 TGTTTTAACAAAAAAT-AAAATAAAATTTTGATTTAAAATAATTTAT
127 TGTTTTAACCAAAAATGAAAA-AAAA-TTCAATTTAAAATCATTTAT
** * * * * * * *
2886197 AAAACTATAAAACCATTTAAAATAAGTAACTAA-GCTTTCGTAGGCATAAGCGACTATGAATGGA
1 AAAGTTATAAAACCACTTAAAATGAGTAAC-AAGGCATTCGAAGGCATGAGTGACTATAAATGGA
* * *
2886261 C-TTTCTTTGTCAATGGAT-G-----GCTT-A-TTTTCTAAATGCAAACATTGAATTATGATCTG
65 CTTTTC-TTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAATGCAAACATTCAATTATGATCTG
* * * * *
2886317 TTTTAGCTAGAAATGAAAGAAAGTTCAATTTAAAATCATTTAT
129 TTTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTAT
* * * * *
2886360 AAA-TTATAAAACCACTTAAAGTGAGTAACAAGGCTTTTGAAGGCATGAATGACTACAAATGGAC
1 AAAGTTATAAAACCACTTAAAATGAGTAACAAGGCATTCGAAGGCATGAGTGACTATAAATGGAC
* * * * * * *
2886424 TTTTACTTGTCAATAGATGGCTTTCGTTTCACGTTTCTCAATGCGAACATCCAATGATGAGCTAT
66 TTTT-CTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAATGCAAACATTCAATTATGATCTGT
* * *
2886489 TTTAACCAAAAATG-AAAAACATTCACTTTAAAATGATTTAT
130 TTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTAT
* *
2886530 AAAGTTATAAAACCACTTAAAATGAGTGAA-AAGGCATTCGAAGGCATGTGTTAC-ATAAATGGA
1 AAAGTTATAAAACCACTTAAAATGAGT-AACAAGGCATTCGAAGGCATGAGTGACTATAAATGGA
* * *
2886593 CTTTTCTTGTGAATGGATGG-ATTCTGCTTCACGTTTCTCGATGCAAACATTCAATTATGATCTG
65 CTTTTCTTGTCAATGGATGGCTTTC-GCTTCACGTTTCTCAATGCAAACATTCAATTATGATCTG
** * *
2886657 TTTTAACCAAAAACAAAAAAAAATTCAGTTCAAAATCATTTAT
129 TTTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTAT
* ** * * * * * *
2886700 AAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCCTTTGAAGGCATGAGTGACTATCAACGAAT
1 AAAGTTATAAAACCACTTAAAATGAGTAACAAGGCATTCGAAGGCATGAGTGACTATAAATGGAC
* * * * * * *
2886765 TTTTCTTGTCAATAGATGGCTTTTGCTTCACATATCCCAATGCAACCATTCAATTATGATCTATT
66 TTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAATGCAAACATTCAATTATGATCTGTT
* * * * * * *
2886830 TTAAGCAGAAATGTAAAAAGATTAAAGTT-AAATCGATTTAA
131 TTAACCAAAAATGAAAAAAAATTCAATTTAAAATC-ATTTAT
** * ** * * * *
2886871 AAAGTTATAAAACCACTTAAAACAAGTGATGAGGCATTCAAAGGCATGGGTGATTATAAATGGAT
1 AAAGTTATAAAACCACTTAAAATGAGTAACAAGGCATTCGAAGGCATGAGTGACTATAAATGGAC
* * * * * * * * *
2886936 TTTTCTTATGAATGGATGGGTTTTGCTTCACATTTCCCAAAGCGAACATTCAATTATGATATGCT
66 TTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAATGCAAACATTCAATTATGATCTG-T
* * * * * * *
2887001 TCT-ACCAAAACTGAAAACAAATTTAACTCAAAATCATTTAA
130 TTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTAT
* * ** * *
2887042 AAAGTTATAAAACCATTTAAAGA-GAGTAACAAGGCCTTTAAAGGTAAGAGTGACTATAAATGGA
1 AAAGTTATAAAACCACTTAAA-ATGAGTAACAAGGCATTCGAAGGCATGAGTGACTATAAATGGA
* *
2887106 CTTTTATTGTCAATGGATGGCTTTCGCTTCACGTTT-TCTAATGCAAGCATTCAATTATGATCTG
65 CTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-AATGCAAACATTCAATTATGATCTG
** *
2887170 TTTTAATTAAAAATGTAAAAAAAAATCAATTTAAAATCATTTAT
129 TTTTAACCAAAAATG-AAAAAAAATTCAATTTAAAATCATTTAT
* * ** ** * * * * *
2887214 AAAGTTATAAAACAACTTCAAGCGAGTAATTAGGCTTTCGTAGGTATGAATGACAATAAATGGAC
1 AAAGTTATAAAACCACTTAAAATGAGTAACAAGGCATTCGAAGGCATGAGTGACTATAAATGGAC
* * * * * *
2887279 TTTTCTTGTCAATGGATGGCTTTCGCTTTACGTTTCCCAATGCAACCATCCAATTGTGATCCGTT
66 TTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAATGCAAACATTCAATTATGATCTGTT
*
2887344 TTAACCAACAAATGAAAAATAATTCAATTTAAAATCATTTTAT
131 TTAACCAA-AAATGAAAAAAAATTCAATTTAAAATCA-TTTAT
* * * *
2887387 AAAGTTATAAAACCACTTAAAATGAGTGACATGGCATTTGAAGGCATGAGTGACTATAAATAGAC
1 AAAGTTATAAAACCACTTAAAATGAGTAACAAGGCATTCGAAGGCATGAGTGACTATAAATGGAC
* * * * * *
2887452 TTTTCTTGTGAATGGGTGGCTTTTCGCTACACGTTTCCCAATGCAAACATCCAATTATGATGTGT
66 TTTTCTTGTCAATGGATGGC-TTTCGCTTCACGTTTCTCAATGCAAACATTCAATTATGATCTGT
** * * *
2887517 TTTAATAAAAAAAGAAAAACAAATTTGAA-TTAAAATAATTTAT
130 TTTAACCAAAAATGAAAAA-AAA-TTCAATTTAAAATCATTTAT
* * *** * * ** *
2887560 -AAGACTATAAAACCATTTAAAGCAAGTAACTAGGCTTTCGAAGGCATGAACGACTATAAATAGA
1 AAAG-TTATAAAACCACTTAAAATGAGTAACAAGGCATTCGAAGGCATGAGTGACTATAAATGGA
* * * * *
2887624 CTTTT-TTGGTCAATGCATGGCTTTCACTTCATGTTTC-CTGATGCAAACATTGAATTATGATCT
65 CTTTTCTT-GTCAATGGATGGCTTTCGCTTCACGTTTCTC-AATGCAAACATTCAATTATGATCT
* * * ** *
2887687 GTTTTAGCTAGAAATGAAGGAAAGTTCAATTTAAAATCATTTAT
128 GTTTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTAT
* * *
2887731 AAAGTTATAAAACCATTTAAAGTGAGTAACAAGGCCTTCGAAGGCAT-AGGTGACTATAAATGGA
1 AAAGTTATAAAACCACTTAAAATGAGTAACAAGGCATTCGAAGGCATGA-GTGACTATAAATGGA
* * ** * * * * *
2887795 CTTTTCTTGTCAATGGATGGCTTTTGCTTCACATTTCTTGATGCGAATATCCAATGATGAGCTGT
65 CTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAATGCAAACATTCAATTATGATCTGT
* * *
2887860 TTTAACAAAAAATGAAAAAACATTCAATTT-AAATGATTTAT
130 TTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTAT
* * * * * * * *
2887901 AAAGTTATAAGACCATTTAAAATGAGTGAGAAAGCATTCAAAGGGATGAGTGACTATAAATGAAC
1 AAAGTTATAAAACCACTTAAAATGAGTAACAAGGCATTCGAAGGCATGAGTGACTATAAATGGAC
* * ** * * *
2887966 TTTTCTT-ACGAATGGATGGCTTTCGCTTCAAGTTTCTTGATACAGACATTCAGTTATGATCTGT
66 TTTTCTTGTC-AATGGATGGCTTTCGCTTCACGTTTCTCAATGCAAACATTCAATTATGATCTGT
* * * * * *
2888030 TTTAGCTAGAAACGAAAAAAAATTCAGTTTAAAATCATTTTT
130 TTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTAT
* ** * * *
2888072 AAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCCTTTGAAGGCTTGAGTGACTATAAATGGAC
1 AAAGTTATAAAACCACTTAAAATGAGTAACAAGGCATTCGAAGGCATGAGTGACTATAAATGGAC
* * * ** * *
2888137 TTTTCTTGTCAATGGATGGCTTTTGCTTCACATTTCAT-GATGTGAACAGTGAATT-TGATCTGT
66 TTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTC-TCAATGCAAACATTCAATTATGATCTGT
* * *
2888200 TTTAACCAAAAATGTAAAAAAATTGAAGTT-AAATCAATTTAT
130 TTTAACCAAAAATGAAAAAAAATTCAATTTAAAATC-ATTTAT
2888242 AAAGTTATAAAA
1 AAAGTTATAAAA
2888254 TTGTAACGAT
Statistics
Matches: 2458, Mismatches: 543, Indels: 172
0.77 0.17 0.05
Matches are distributed among these distances:
161 2 0.00
162 47 0.02
163 34 0.01
164 42 0.02
165 5 0.00
166 2 0.00
168 3 0.00
169 73 0.03
170 427 0.17
171 1042 0.42
172 420 0.17
173 300 0.12
174 57 0.02
175 4 0.00
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.33
Consensus pattern (171 bp):
AAAGTTATAAAACCACTTAAAATGAGTAACAAGGCATTCGAAGGCATGAGTGACTATAAATGGAC
TTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAATGCAAACATTCAATTATGATCTGTT
TTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTAT
Found at i:2886746 original size:341 final size:342
Alignment explanation
Indices: 2884969--2888253 Score: 2952
Period size: 341 Copynumber: 9.6 Consensus size: 342
2884959 AAAAACAAAA
** * ** * *
2884969 AAAAAAAATAAAGTTCAAAATCATATCCAAAGTTATAAAACCATTTCAAGAGAGTAACAAGGCCT
1 AAAAAAAATTCAGTTCAAAATCATTTATAAAGTTATAAAACCATTTAAAGTGAGTAACAAGGCCT
* * *
2885034 TTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGACTTTCACTTTACGTTTCT
66 TTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCT
* * * * * *
2885099 CAATGTGAACATCCAATGATGAGTTGTTTGAACCAAAAATG-AAAAAAATTCAATTTAAAAAGAT
131 CAATGCGAACATCCAATTATGAGCTGTTTTAACAAAAAATGAAAAAAAATTCAATTTAAAATGAT
** * * *
2885163 TTATAAAGTTATAAAACCACGCAAAACTAGTGAGCAA-GCATTCAAAGGCATGAGTGACTATAAA
196 TTATAAAGTTATAAAACCACTTAAAACGAGTGA-AAAGGCATTCGAAGGCATGAGTGACTATAAA
* * * * * * *
2885227 TGGACTTTTCTTGTCAATAGATGGATTTTGCTTCATGTTTCTTGATGCGAATATTCAATTATGAT
260 TGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACATTCAATTATGAT
* * *
2885292 ATGTTTTAACTAGAAACG
325 CTGTTTTAACCAAAAACG
* * * * * * * *
2885310 AAAAAAAATTTAGTTCAAAATTATTTAAAAAGTTATGAAATCATTTAAAGTGTGTAAGAAGGCCA
1 AAAAAAAATTCAGTTCAAAATCATTTATAAAGTTATAAAACCATTTAAAGTGAGTAACAAGGCCT
* * * * * * * *
2885375 TCGAAGGCATCAATGACTATCAGTAGACTTTTCTTGTTAATGGATGGCTTTCGCTTCACATTT-T
66 TTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCT
* * ** * * * * * *
2885439 ACAATGTGAGCATTGAATTAAGATCTGTTTTAACTAGAAATGTAAAAAAAAAATCAAGTT-AAAT
131 -CAATGCGAACATCCAATTATGAGCTGTTTTAACAAAAAATG--AAAAAAAATTCAATTTAAAAT
* * * * * *
2885503 CGATTTATAAAGTTATAAAACTACTTTAAACGAGTGACAAGACATTCGAAGGTATGAGTGACTAC
193 -GATTTATAAAGTTATAAAACCACTTAAAACGAGTGAAAAGGCATTCGAAGGCATGAGTGACTAT
* * * * * * * *
2885568 AAATGGACTTTTCTTGTGAATGGATGGCTTTCACTTTACATTTCTTAGA-GCAAGCATTAAATAA
257 AAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTC-TCGATGCAAACATTCAATTA
** * *
2885632 TGATCTACTTTAACCAGAAATG
321 TGATCTGTTTTAACCAAAAACG
***
2885654 AAAAACAAATT-AGTTCAAAATCATTTATAAAGTTATAAAACCATTTAAAACAAGTAACAAGGCC
1 AAAAA-AAATTCAGTTCAAAATCATTTATAAAGTTATAAAACCATTTAAAGTGAGTAACAAGGCC
** * * *
2885718 TTCAAAGTCAAT-AGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACATTT
65 TTTGAAGGC-ATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTT
* * * * * * * *
2885782 CCCAGTGCGAACATTCACA-TATGATCTGTTTTATCTAGAAATGTAAAAAAATTCAATTTAAAAT
129 CTCAATGCGAACATCCA-ATTATGAGCTGTTTTAACAAAAAATGAAAAAAAATTCAATTTAAAAT
* * *
2885846 GATTTATAAAGTTATAAAACAACTTAAAGCGAGT-AACTAA-GCTTTCGAAGGCATGAGTGACTA
193 GATTTATAAAGTTATAAAACCACTTAAAACGAGTGAA--AAGGCATTCGAAGGCATGAGTGACTA
* * * * * *
2885909 TAAGTGGACTTTTCTTGTCAATGGATGACTTTCACTTCATGTTTCTCGATG-AAAAAGTCCAATT
256 TAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACA-TTCAATT
* ** *
2885973 ATCATCCATTTTAACCAAAAATG
320 ATGATCTGTTTTAACCAAAAACG
* * * * * * *
2885996 AGAAAGAATTCAGTTGAAAATAATTTTATAAAGTTATAAAATCACTTAAAATGAGTGAA-AAGGC
1 AAAAAAAATTCAGTTCAAAATCA-TTTATAAAGTTATAAAACCATTTAAAGTGAGT-AACAAGGC
* ** * * * **
2886060 ATTCAAAGGTATGAGTGACTATAAATAGACTTTTCTTCTCAATAGG-TGGCTTTTTCTAT-ACGT
64 CTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAAT-GGATGGCTTTCGCT-TCACGT
* **
2886123 TTC-CTAATGCAAACATCCAATTATGATG-TGTTTTAACAAAAAAT-AAAATAAAATTTTGATTT
127 TTCTC-AATGCGAACATCCAATTATGA-GCTGTTTTAACAAAAAATGAAAA-AAAA-TTCAATTT
* ** * ** * * * *
2886185 AAAATAATTTATAAAACTATAAAACCATTTAAAATAAGT-AACTAA-GCTTTCGTAGGCATAAGC
188 AAAATGATTTATAAAGTTATAAAACCACTTAAAACGAGTGAA--AAGGCATTCGAAGGCATGAGT
* * **
2886248 GACTATGAATGGAC-TTTCTTTGTCAATGGAT-G-----GCTT-A-TTTTCTAAATGCAAACATT
251 GACTATAAATGGACTTTTC-TTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACATT
* * * * *
2886304 GAATTATGATCTGTTTTAGCTAGAAATG
315 CAATTATGATCTGTTTTAACCAAAAACG
* * * * * *
2886332 AAAGAAAGTTCAATTTAAAATCATTTATAAA-TTATAAAACCACTTAAAGTGAGTAACAAGGCTT
1 AAAAAAAATTCAGTTCAAAATCATTTATAAAGTTATAAAACCATTTAAAGTGAGTAACAAGGCCT
* * * *
2886396 TTGAAGGCATGAATGACTACAAATGGACTTTTACTTGTCAATAGATGGCTTTCGTTTCACGTTTC
66 TTGAAGGCATGAGTGACTATAAATGGACTTTT-CTTGTCAATGGATGGCTTTCGCTTCACGTTTC
* * * * *
2886461 TCAATGCGAACATCCAATGATGAGCTATTTTAACCAAAAATG-AAAAACATTCACTTTAAAATGA
130 TCAATGCGAACATCCAATTATGAGCTGTTTTAACAAAAAATGAAAAAAAATTCAATTTAAAATGA
* * *
2886525 TTTATAAAGTTATAAAACCACTTAAAATGAGTGAAAAGGCATTCGAAGGCATGTGTTAC-ATAAA
195 TTTATAAAGTTATAAAACCACTTAAAACGAGTGAAAAGGCATTCGAAGGCATGAGTGACTATAAA
* *
2886589 TGGACTTTTCTTGTGAATGGATGG-ATTCTGCTTCACGTTTCTCGATGCAAACATTCAATTATGA
260 TGGACTTTTCTTGTCAATGGATGGCTTTC-GCTTCACGTTTCTCGATGCAAACATTCAATTATGA
*
2886653 TCTGTTTTAACCAAAAACA
324 TCTGTTTTAACCAAAAACG
*
2886672 AAAAAAAATTCAGTTCAAAATCATTTATAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCCT
1 AAAAAAAATTCAGTTCAAAATCATTTATAAAGTTATAAAACCATTTAAAGTGAGTAACAAGGCCT
* * * * * * * * *
2886737 TTGAAGGCATGAGTGACTATCAACGAATTTTTCTTGTCAATAGATGGCTTTTGCTTCACATATCC
66 TTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCT
* * * * * * * *
2886802 CAATGC-AACCATTCAATTATGATCTATTTTAAGC-AGAAATGTAAAAAGATTAAAGTT-AAATC
131 CAATGCGAA-CATCCAATTATGAGCTGTTTTAA-CAAAAAATGAAAAAAAATTCAATTTAAAAT-
* * ** * * *
2886864 GATTTAAAAAGTTATAAAACCACTTAAAACAAGTGATGAGGCATTCAAAGGCATGGGTGATTATA
193 GATTTATAAAGTTATAAAACCACTTAAAACGAGTGAAAAGGCATTCGAAGGCATGAGTGACTATA
* * * * * * * * * *
2886929 AATGGATTTTTCTTATGAATGGATGGGTTTTGCTTCACATTTCCCAAAGCGAACATTCAATTATG
258 AATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACATTCAATTATG
* *
2886994 ATATGCTTCT-ACC-AAAACTG
323 ATCTG-TTTTAACCAAAAAC-G
* * ** * *
2887014 AAAACAAATTTAACTCAAAATCATTTAAAAAGTTATAAAACCATTTAAAGAGAGTAACAAGGCCT
1 AAAAAAAATTCAGTTCAAAATCATTTATAAAGTTATAAAACCATTTAAAGTGAGTAACAAGGCCT
* * * *
2887079 TTAAAGGTAAGAGTGACTATAAATGGACTTTTATTGTCAATGGATGGCTTTCGCTTCACGTTT-T
66 TTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCT
* * ** *
2887143 CTAATGC-AAGCATTCAATTATGATCTGTTTTAATTAAAAATGTAAAAAAAAATCAATTTAAAAT
131 C-AATGCGAA-CATCCAATTATGAGCTGTTTTAACAAAAAATG-AAAAAAAATTCAATTTAAAAT
* * * * * * * * * *
2887207 CATTTATAAAGTTATAAAACAACTTCAAGCGAGT-AATTAGGCTTTCGTAGGTATGAATGACAAT
193 GATTTATAAAGTTATAAAACCACTTAAAACGAGTGAA-AAGGCATTCGAAGGCATGAGTGACTAT
* * * * * *
2887271 AAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTTACGTTTCCCAATGCAACCATCCAATTGT
257 AAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACATTCAATTAT
* *
2887336 GATCCGTTTTAACCAACAAATG
322 GATCTGTTTTAACCAA-AAACG
* * * * * * * *
2887358 AAAAATAATTCAATTTAAAATCATTTTATAAAGTTATAAAACCACTTAAAATGAGTGACATGGCA
1 AAAAAAAATTCAGTTCAAAATCA-TTTATAAAGTTATAAAACCATTTAAAGTGAGTAACAAGGCC
* * * *
2887423 TTTGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTGAATGGGTGGCTTTTCGCTACACGTTT
65 TTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC-TTTCGCTTCACGTTT
* * * * *
2887488 CCCAATGCAAACATCCAATTATGATG-TGTTTTAATAAAAAAAGAAAAACAAATTTGAA-TTAAA
129 CTCAATGCGAACATCCAATTATGA-GCTGTTTTAACAAAAAATGAAAAA-AAA-TTCAATTTAAA
* * * * * * * **
2887551 ATAATTTAT-AAGACTATAAAACCATTTAAAGCAAGT-AACTAGGCTTTCGAAGGCATGAACGAC
191 ATGATTTATAAAG-TTATAAAACCACTTAAAACGAGTGAA-AAGGCATTCGAAGGCATGAGTGAC
* * * * *
2887614 TATAAATAGACTTTT-TTGGTCAATGCATGGCTTTCACTTCATGTTTC-CTGATGCAAACATTGA
254 TATAAATGGACTTTTCTT-GTCAATGGATGGCTTTCGCTTCACGTTTCTC-GATGCAAACATTCA
* * * *
2887677 ATTATGATCTGTTTTAGCTAGAAATG
317 ATTATGATCTGTTTTAACCAAAAACG
** * * *
2887703 AAGGAAAGTTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAAGTGAGTAACAAGGCCT
1 AAAAAAAATTCAGTTCAAAATCATTTATAAAGTTATAAAACCATTTAAAGTGAGTAACAAGGCCT
* * *
2887768 TCGAAGGCAT-AGGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACATTTC
66 TTGAAGGCATGA-GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTC
** * * *
2887832 TTGATGCGAATATCCAATGATGAGCTGTTTTAACAAAAAATGAAAAAACATTCAATTT-AAATGA
130 TCAATGCGAACATCCAATTATGAGCTGTTTTAACAAAAAATGAAAAAAAATTCAATTTAAAATGA
* * * * *
2887896 TTTATAAAGTTATAAGACCATTTAAAATGAGTGAGAAA-GCATTCAAAGGGATGAGTGACTATAA
195 TTTATAAAGTTATAAAACCACTTAAAACGAGTGA-AAAGGCATTCGAAGGCATGAGTGACTATAA
* * * * * * *
2887960 ATGAACTTTTCTT-ACGAATGGATGGCTTTCGCTTCAAGTTTCTTGATACAGACATTCAGTTATG
259 ATGGACTTTTCTTGTC-AATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACATTCAATTATG
* * *
2888024 ATCTGTTTTAGCTAGAAACG
323 ATCTGTTTTAACCAAAAACG
* * *
2888044 AAAAAAAATTCAGTTTAAAATCATTTTTAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCCT
1 AAAAAAAATTCAGTTCAAAATCATTTATAAAGTTATAAAACCATTTAAAGTGAGTAACAAGGCCT
* * *
2888109 TTGAAGGCTTGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACATTTCA
66 TTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTC-
* * * * * * * *
2888174 T-GATGTGAACAGT-GAATT-TGATCTGTTTTAACCAAAAATGTAAAAAAATTGAAGTT-AAATC
130 TCAATGCGAACA-TCCAATTATGAGCTGTTTTAACAAAAAATGAAAAAAAATTCAATTTAAAAT-
*
2888235 AATTTATAAAGTTATAAAA
193 GATTTATAAAGTTATAAAA
2888254 TTGTAACGAT
Statistics
Matches: 2407, Mismatches: 450, Indels: 174
0.79 0.15 0.06
Matches are distributed among these distances:
332 22 0.01
333 61 0.03
334 61 0.03
335 67 0.03
336 47 0.02
337 5 0.00
338 7 0.00
339 3 0.00
340 167 0.07
341 538 0.22
342 374 0.16
343 306 0.13
344 451 0.19
345 125 0.05
346 167 0.07
347 6 0.00
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33
Consensus pattern (342 bp):
AAAAAAAATTCAGTTCAAAATCATTTATAAAGTTATAAAACCATTTAAAGTGAGTAACAAGGCCT
TTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCT
CAATGCGAACATCCAATTATGAGCTGTTTTAACAAAAAATGAAAAAAAATTCAATTTAAAATGAT
TTATAAAGTTATAAAACCACTTAAAACGAGTGAAAAGGCATTCGAAGGCATGAGTGACTATAAAT
GGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACATTCAATTATGATC
TGTTTTAACCAAAAACG
Found at i:2887300 original size:514 final size:510
Alignment explanation
Indices: 2884997--2888253 Score: 2799
Period size: 514 Copynumber: 6.4 Consensus size: 510
2884987 AATCATATCC
* *
2884997 AAAGTTATAAAACCATTTCAAGAGAGTAACAAGGCCTTTGAAGGCATGAGTGACTATAAATGGAC
1 AAAGTTATAAAACCATTTAAAGAGAGTAACAAGGCCTTTGAAGGTATGAGTGACTATAAATGGAC
* * ** * *
2885062 TTTTCTTGTCAATGGATGACTTTCACTTTACG-TTTCTCAATGTGAACATCCAATGATGAGT-TG
66 TTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTTCT-AATGCAAACATTCAATTATGA-TCTG
* ** ***
2885125 TTTGAACCAAAAATG-AAAAAAATTCAATTTAAAAAGATTTATAAAGTTATAAAACCACGCAAAA
129 TTTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAAA
* * * * * *
2885189 CTAGTGAGCAA-GCATTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGAT
194 CGAGT-AACAAGGCTTTCGAAGGCAT-AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCT
** *** * * *
2885253 TTTGCTTCATGTTTCTTGATGCGAATATTCAATTATGATATGTTTTAACTAGAAACGAAAAAAAA
257 TTTGCTTCACATTTCCCAATGCGAACATTCAATTATGATCTGTTTTAACTAGAAATGAAAAAAAA
* * * * * * * * * * *
2885318 TTTAGTTCAAAATTATTTAAAAAGTTATGAAATCATTTAAAGTGTGTAAGAAGGCCA-TCGAAGG
322 TTCAATTTAAAATGATTTATAAAGTTATAAAACCACTTAAAATGAGTGAG-AGG-CATTCGAAGG
* * * * * * *
2885382 CATCAATGACTATCAGTAGACTTTTCTTGTTAATGGATGGCTTTCGCTTCACATTT-TACAATGT
385 CATGAGTGACTATAAATGGACTTTTCTTGTGAATGGATGGCTTTCGCTTCACATTTCT-CAATGC
* ** * * * * * *
2885446 GAGCATTGAATTAAGATCTGTTTTAACTAGAAATGTAAAAAAAAAATCAAGTT-AAATCGATTTA
449 GAACATCCAATTATGATATGTTTTAACCAAAAATG---AAAAAAATTCAACTTAAAATC-ATTTA
2885510 T
510 T
* * * * * * *
2885511 AAAGTTATAAAACTACTTTAAA-CGAGTGACAAGACATTCGAAGGTATGAGTGACTACAAATGGA
1 AAAGTTATAAAACCA-TTTAAAGAGAGTAACAAGGCCTTTGAAGGTATGAGTGACTATAAATGGA
* * * * * *
2885575 CTTTTCTTGTGAATGGATGGCTTTCACTTTAC-ATTTCTTAGA-GCAAGCATTAAATAATGATCT
65 CTTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTTC-TA-ATGCAAACATTCAATTATGATCT
** * * *
2885638 ACTTTAACCAGAAATGAAAAACAAATT-AGTTCAAAATCATTTATAAAGTTATAAAACCATTTAA
128 GTTTTAACCAAAAATGAAAAA-AAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAA
* * * * *
2885702 AACAAGTAACAAGGCCTTCAAAGTCAATAGTGACTATAAATGGACTTTTCTTATCAATGGATGGC
192 AACGAGTAACAAGGCTTTCGAAGGC-ATAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC
* * * *
2885767 TTTCGCTTCACATTTCCCAGTGCGAACATTCACA-TATGATCTGTTTTATCTAGAAATGTAAAAA
256 TTTTGCTTCACATTTCCCAATGCGAACATTCA-ATTATGATCTGTTTTAACTAGAAATGAAAAAA
* ** * * * *
2885831 AATTCAATTTAAAATGATTTATAAAGTTATAAAACAACTTAAAGCGAGTAACTAAGCTTTCGAAG
320 AATTCAATTTAAAATGATTTATAAAGTTATAAAACCACTTAAAATGAGTGA-GAGGCATTCGAAG
* * * * ** *
2885896 GCATGAGTGACTATAAGTGGACTTTTCTTGTCAATGGATGACTTTCACTTCATGTTTCTCGATG-
384 GCATGAGTGACTATAAATGGACTTTTCTTGTGAATGGATGGCTTTCGCTTCACATTTCTCAATGC
* * * *** * * *
2885960 AAAAAGTCCAATTATCATCCATTTTAACCAAAAATGAGAAAGAATTC-AGTTGAAAATAATTTTA
449 GAACA-TCCAATTATGATATGTTTTAACCAAAAATGA-AAAAAATTCAACTT-AAAATCA-TTTA
2886024 T
510 T
* * * ** *
2886025 AAAGTTATAAAATCACTTAAA-ATGAGTGAA-AAGGCATTCAAAGGTATGAGTGACTATAAATAG
1 AAAGTTATAAAACCATTTAAAGA-GAGT-AACAAGGCCTTTGAAGGTATGAGTGACTATAAATGG
* ** * * *
2886088 ACTTTTCTTCTCAATAGG-TGGCTTTTTCTAT-ACGTTTCCTAATGCAAACATCCAATTATGATG
64 ACTTTTCTTGTCAAT-GGATGGCTTTCACT-TCACGTTTTCTAATGCAAACATTCAATTATGATC
* ** * **
2886151 TGTTTTAACAAAAAAT-AAAATAAAATTTTGATTTAAAATAATTTATAAAACTATAAAACCATTT
127 TGTTTTAACCAAAAATGAAAA-AAAA-TTCAATTTAAAATCATTTATAAAGTTATAAAACCATTT
** * * *
2886215 AAAATAAGTAACTAA-GCTTTCGTAGGCATAAGCGACTATGAATGGAC-TTTCTTTGTCAATGGA
190 AAAACGAGTAAC-AAGGCTTTCGAAGGCAT-AGTGACTATAAATGGACTTTTC-TTGTCAATGGA
* * * *
2886278 TGGCTTATT--TT--C---T--AAATGCAAACATTGAATTATGATCTGTTTTAGCTAGAAATGAA
252 TGGCTT-TTGCTTCACATTTCCCAATGCGAACATTCAATTATGATCTGTTTTAACTAGAAATGAA
* * * * * * * *
2886334 AGAAAGTTCAATTTAAAATCATTTATAAA-TTATAAAACCACTTAAAGTGAGTAACAAGGCTTTT
316 AAAAAATTCAATTTAAAATGATTTATAAAGTTATAAAACCACTTAAAATGAGTGA-GAGGCATTC
* * * * * *
2886398 GAAGGCATGAATGACTACAAATGGACTTTTACTTGTCAATAGATGGCTTTCGTTTCACGTTTCTC
380 GAAGGCATGAGTGACTATAAATGGACTTTT-CTTGTGAATGGATGGCTTTCGCTTCACATTTCTC
* ** * * *
2886463 AATGCGAACATCCAATGATGAGCTATTTTAACCAAAAATGAAAAACATTC-ACTTTAAAATGATT
444 AATGCGAACATCCAATTATGATATGTTTTAACCAAAAATGAAAAAAATTCAAC-TTAAAATCATT
2886527 TAT
508 TAT
* * * * * *
2886530 AAAGTTATAAAACCACTTAAA-ATGAGTGAA-AAGGCATTCGAAGGCATGTGTTAC-ATAAATGG
1 AAAGTTATAAAACCATTTAAAGA-GAGT-AACAAGGCCTTTGAAGGTATGAGTGACTATAAATGG
* * * *
2886592 ACTTTTCTTGTGAATGGATGG-ATTCTGCTTCACG-TTTCTCGATGCAAACATTCAATTATGATC
64 ACTTTTCTTGTCAATGGATGGCTTTC-ACTTCACGTTTTCT-AATGCAAACATTCAATTATGATC
** * *
2886655 TGTTTTAACCAAAAACAAAAAAAAATTCAGTTCAAAATCATTTATAAAGTTATAAAACCATTTAA
127 TGTTTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAA
* * * * * *
2886720 AGCGAGTAACAAGGCCTTT-GAAGGCATGAGTGACTATCAACGAATTTTTCTTGTCAATAGATGG
192 AACGAGTAACAAGG-CTTTCGAAGGCAT-AGTGACTATAAATGGACTTTTCTTGTCAATGGATGG
* * *
2886784 CTTTTGCTTCACATATCCCAATGC-AACCATTCAATTATGATCTATTTTAAGC-AGAAATGTAAA
255 CTTTTGCTTCACATTTCCCAATGCGAA-CATTCAATTATGATCTGTTTTAA-CTAGAAATGAAAA
* * * * ** *
2886847 AAGATTAAAGTT-AAATCGATTTAAAAAGTTATAAAACCACTTAAAACAAGTGATGAGGCATTCA
318 AAAATTCAATTTAAAAT-GATTTATAAAGTTATAAAACCACTTAAAATGAGTGA-GAGGCATTCG
* * * * * * *
2886911 AAGGCATGGGTGATTATAAATGGATTTTTCTTATGAATGGATGGGTTTTGCTTCACATTTCCCAA
381 AAGGCATGAGTGACTATAAATGGACTTTTCTTGTGAATGGATGGCTTTCGCTTCACATTTCTCAA
* * * * * *
2886976 AGCGAACATTCAATTATGATATGCTTCT-ACCAAAACTGAAAACAAATTTAACTCAAAATCATTT
446 TGCGAACATCCAATTATGATATG-TTTTAACCAAAAATGAAAA-AAATTCAACTTAAAATCATTT
*
2887040 AA
509 AT
* *
2887042 AAAGTTATAAAACCATTTAAAGAGAGTAACAAGGCCTTTAAAGGTAAGAGTGACTATAAATGGAC
1 AAAGTTATAAAACCATTTAAAGAGAGTAACAAGGCCTTTGAAGGTATGAGTGACTATAAATGGAC
* * *
2887107 TTTTATTGTCAATGGATGGCTTTCGCTTCACGTTTTCTAATGCAAGCATTCAATTATGATCTGTT
66 TTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTTCTAATGCAAACATTCAATTATGATCTGTT
** * * * * *
2887172 TTAATTAAAAATGTAAAAAAAAATCAATTTAAAATCATTTATAAAGTTATAAAACAACTTCAAGC
131 TTAACCAAAAATG-AAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAAAC
** * * * *
2887237 GAGTAATTAGGCTTTCGTAGGTATGAATGACAATAAATGGACTTTTCTTGTCAATGGATGGCTTT
195 GAGTAACAAGGCTTTCGAAGGCAT-AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTT
* * * * * * * * *
2887302 CGCTTTACGTTTCCCAATGC-AACCATCCAATTGTGATCCGTTTTAACCAACAAATGAAAAATAA
259 TGCTTCACATTTCCCAATGCGAA-CATTCAATTATGATCTGTTTTAA-CTAGAAATGAAAAAAAA
* * *
2887366 TTCAATTTAAAATCATTTTATAAAGTTATAAAACCACTTAAAATGAGTGACATGGCATTTGAAGG
322 TTCAATTTAAAATGA-TTTATAAAGTTATAAAACCACTTAAAATGAGTGAGA-GGCATTCGAAGG
* * * * *
2887431 CATGAGTGACTATAAATAGACTTTTCTTGTGAATGGGTGGCTTTTCGCTACACGTTTCCCAATGC
385 CATGAGTGACTATAAATGGACTTTTCTTGTGAATGGATGGC-TTTCGCTTCACATTTCTCAATGC
* * ** * * *
2887496 AAACATCCAATTATGATGTGTTTTAATAAAAAAAGAAAAACAAATTTGAA-TTAAAATAATTTAT
449 GAACATCCAATTATGATATGTTTTAACCAAAAATG-AAAA-AAA-TTCAACTTAAAATCATTTAT
* * * ** *
2887560 -AAGACTATAAAACCATTTAAAGCA-AGTAACTAGG-CTTTCGAAGGCATGAACGACTATAAATA
1 AAAG-TTATAAAACCATTTAAAG-AGAGTAACAAGGCCTTT-GAAGGTATGAGTGACTATAAATG
* * * * *
2887622 GACTTTT-TTGGTCAATGCATGGCTTTCACTTCATGTTTCCTGATGCAAACATTGAATTATGATC
63 GACTTTTCTT-GTCAATGGATGGCTTTCACTTCACGTTTTCTAATGCAAACATTCAATTATGATC
* * * ** *
2887686 TGTTTTAGCTAGAAATGAAGGAAAGTTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAA
127 TGTTTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAA
** *
2887751 AGTGAGTAACAAGGCCTTCGAAGGCATAGGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC
192 AACGAGTAACAAGGCTTTCGAAGGCATA-GTGACTATAAATGGACTTTTCTTGTCAATGGATGGC
*** * * * * * * *
2887816 TTTTGCTTCACATTTCTTGATGCGAATATCCAATGATGAGCTGTTTTAACAAAAAATGAAAAAAC
256 TTTTGCTTCACATTTCCCAATGCGAACATTCAATTATGATCTGTTTTAACTAGAAATGAAAAAAA
* * * *
2887881 ATTCAATTT-AAATGATTTATAAAGTTATAAGACCATTTAAAATGAGTGAGAAAGCATTCAAAGG
321 ATTCAATTTAAAATGATTTATAAAGTTATAAAACCACTTAAAATGAGTGAG-AGGCATTCGAAGG
* * ** ** *
2887945 GATGAGTGACTATAAATGAACTTTTCTTACGAATGGATGGCTTTCGCTTCA-AGTTTCTTGATAC
385 CATGAGTGACTATAAATGGACTTTTCTTGTGAATGGATGGCTTTCGCTTCACA-TTTCTCAATGC
* * * * * * * ** *
2888009 -AGACATTCAGTTATGATCTGTTTTAGCTAGAAACGAAAAAAAATTCAGTTTAAAATCATTTTT
449 GA-ACATCCAATTATGATATGTTTTAACCAAAAATG-AAAAAAATTCAACTTAAAATCATTTAT
*
2888072 AAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCCTTTGAAGGCT-TGAGTGACTATAAATGGA
1 AAAGTTATAAAACCATTTAAAGAGAGTAACAAGGCCTTTGAAGG-TATGAGTGACTATAAATGGA
** * * ** * *
2888136 CTTTTCTTGTCAATGGATGGCTTTTGCTTCAC-ATTTCATGATGTGAACAGTGAATT-TGATCTG
65 CTTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTTC-TAATGCAAACATTCAATTATGATCTG
* * *
2888199 TTTTAACCAAAAATGTAAAAAAATTGAAGTT-AAATCAATTTATAAAGTTATAAAA
129 TTTTAACCAAAAATGAAAAAAAATTCAATTTAAAATC-ATTTATAAAGTTATAAAA
2888254 TTGTAACGAT
Statistics
Matches: 2231, Mismatches: 421, Indels: 185
0.79 0.15 0.07
Matches are distributed among these distances:
502 4 0.00
503 85 0.04
504 76 0.03
505 58 0.03
506 73 0.03
507 122 0.05
508 3 0.00
509 2 0.00
510 11 0.00
511 163 0.07
512 219 0.10
513 153 0.07
514 452 0.20
515 374 0.17
516 117 0.05
517 182 0.08
518 132 0.06
519 5 0.00
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.33
Consensus pattern (510 bp):
AAAGTTATAAAACCATTTAAAGAGAGTAACAAGGCCTTTGAAGGTATGAGTGACTATAAATGGAC
TTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTTCTAATGCAAACATTCAATTATGATCTGTT
TTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAAACG
AGTAACAAGGCTTTCGAAGGCATAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTG
CTTCACATTTCCCAATGCGAACATTCAATTATGATCTGTTTTAACTAGAAATGAAAAAAAATTCA
ATTTAAAATGATTTATAAAGTTATAAAACCACTTAAAATGAGTGAGAGGCATTCGAAGGCATGAG
TGACTATAAATGGACTTTTCTTGTGAATGGATGGCTTTCGCTTCACATTTCTCAATGCGAACATC
CAATTATGATATGTTTTAACCAAAAATGAAAAAAATTCAACTTAAAATCATTTAT
Found at i:2888542 original size:23 final size:24
Alignment explanation
Indices: 2888509--2888558 Score: 68
Period size: 23 Copynumber: 2.1 Consensus size: 24
2888499 TAAATAGGCC
*
2888509 TAAGGCAT-AAATGAATGATGAAAA
1 TAAGGCATAAAATG-ATGAAGAAAA
2888533 TAAGG-ATAAAATGATGAAGAAAA
1 TAAGGCATAAAATGATGAAGAAAA
2888556 TAA
1 TAA
2888559 AAATAATGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 14 0.58
24 10 0.42
ACGTcount: A:0.58, C:0.02, G:0.20, T:0.20
Consensus pattern (24 bp):
TAAGGCATAAAATGATGAAGAAAA
Found at i:2888564 original size:23 final size:24
Alignment explanation
Indices: 2888517--2888564 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
2888507 CCTAAGGCAT
* **
2888517 AAATGAATGATGAAAATAAGGATA
1 AAATGAATGAAGAAAATAAAAATA
2888541 AAATG-ATGAAGAAAATAAAAATA
1 AAATGAATGAAGAAAATAAAAATA
2888564 A
1 A
2888565 TGATGATTTC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 16 0.76
24 5 0.24
ACGTcount: A:0.65, C:0.00, G:0.17, T:0.19
Consensus pattern (24 bp):
AAATGAATGAAGAAAATAAAAATA
Found at i:2889703 original size:37 final size:37
Alignment explanation
Indices: 2889650--2889768 Score: 195
Period size: 37 Copynumber: 3.2 Consensus size: 37
2889640 TGATGTTGGG
*
2889650 TGATGATGTTAAAGTGTGCGAGTAGGGAGTGCACACA
1 TGATGATGTTAGAGTGTGCGAGTAGGGAGTGCACACA
2889687 TGATGATGTTAGAGTGTGCGAGTAGGGAGTGCACACA
1 TGATGATGTTAGAGTGTGCGAGTAGGGAGTGCACACA
* *
2889724 TGACGATGTT-GAAGTGTGCGAGCAGGGAGTGCACACA
1 TGATGATGTTAG-AGTGTGCGAGTAGGGAGTGCACACA
2889761 TGATGATG
1 TGATGATG
2889769 ATATTGCATT
Statistics
Matches: 77, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
36 1 0.01
37 76 0.99
ACGTcount: A:0.28, C:0.12, G:0.37, T:0.24
Consensus pattern (37 bp):
TGATGATGTTAGAGTGTGCGAGTAGGGAGTGCACACA
Found at i:2891842 original size:25 final size:25
Alignment explanation
Indices: 2891813--2891892 Score: 79
Period size: 25 Copynumber: 3.0 Consensus size: 25
2891803 CACAACCATG
*
2891813 TATATCAACTTGTGGCCTAGCCACA
1 TATATCAACTAGTGGCCTAGCCACA
* *
2891838 TATATCAACTAGTGGCCTTGCCATGTA
1 TATATCAACTAGTGGCCTAGCCA--CA
* *
2891865 TATATCACAGATCGTGGCCTAGCCACA
1 TATATCA-A-CTAGTGGCCTAGCCACA
2891892 T
1 T
2891893 CTAACAGCCC
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
25 21 0.48
27 10 0.23
28 1 0.02
29 12 0.27
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (25 bp):
TATATCAACTAGTGGCCTAGCCACA
Found at i:2896810 original size:37 final size:36
Alignment explanation
Indices: 2896768--2896886 Score: 202
Period size: 37 Copynumber: 3.2 Consensus size: 36
2896758 AAATGTTGTG
*
2896768 TGATGATGTTGAAGTGAGCGAGTAGGGAGTGCACACA
1 TGATGATGTT-AAGTGTGCGAGTAGGGAGTGCACACA
2896805 TGATGATGTTAGAGTGTGCGAGTAGGGAGTGCACACA
1 TGATGATGTTA-AGTGTGCGAGTAGGGAGTGCACACA
2896842 TGATGATGTTAAAGTGTGCGAGTAGGGAGTGCACACA
1 TGATGATGTT-AAGTGTGCGAGTAGGGAGTGCACACA
2896879 TGATGATG
1 TGATGATG
2896887 ATATTGCATT
Statistics
Matches: 79, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
36 1 0.01
37 77 0.97
38 1 0.01
ACGTcount: A:0.29, C:0.10, G:0.37, T:0.24
Consensus pattern (36 bp):
TGATGATGTTAAGTGTGCGAGTAGGGAGTGCACACA
Found at i:2900235 original size:43 final size:42
Alignment explanation
Indices: 2900174--2900265 Score: 148
Period size: 43 Copynumber: 2.2 Consensus size: 42
2900164 TACCATCCCA
*
2900174 CCATCATCAGCTCATGTGCACTCCCACACCGCACATAGCTGGG
1 CCATCATCAGCTCATGTGCACTCCCACA-CGCACATAGCTAGG
*
2900217 CCATCATCAGCTCATGTGCACTCCCACACGCATATAGCTAGG
1 CCATCATCAGCTCATGTGCACTCCCACACGCACATAGCTAGG
*
2900259 TCATCAT
1 CCATCAT
2900266 TATCACACAA
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
42 18 0.39
43 28 0.61
ACGTcount: A:0.25, C:0.37, G:0.16, T:0.22
Consensus pattern (42 bp):
CCATCATCAGCTCATGTGCACTCCCACACGCACATAGCTAGG
Found at i:2902467 original size:171 final size:171
Alignment explanation
Indices: 2902079--2903868 Score: 1606
Period size: 171 Copynumber: 10.5 Consensus size: 171
2902069 GGGTGTTACA
* * * * * *
2902079 AAAACCACTTAAAATGAGTGACAAGGCATTCGAAGGCATGAATGACTATTAATGGGCTTTTCTTG
1 AAAACCACTTAAAATGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTG
* * * ** *
2902144 TGAATGGATGGCTTTCGCTTCACGTTTCTCAAATTG--AACATTCAATTGA-GATCTACTTTGAC
66 TCAATGGATGGCTTTAGCTTCACGTTT-TCTAA-TGCAAACATTCAATT-ATGATCTGTTTTAAC
* * **
2902206 CAGAAATGAAAAAAGAATTCAGTCCAAAATCATTTATAAAGTTAT
128 CAGAAATGTAAAAA-AATTCAATTTAAAATCATTTATAAAGTTAT
* * * *
2902251 AAAACCATTTAAAAAGAGTAACAAGGCCTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTA
1 AAAACCACTTAAAATGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTG
* * * * **
2902316 TCAATGGATGGCTTGAGCTTCATGTTTTCTAATGCAAAAATTCAATTATGATATGTTTTAATTAG
66 TCAATGGATGGCTTTAGCTTCACGTTTTCTAATGCAAACATTCAATTATGATCTGTTTTAACCAG
* *
2902381 AAATGTAAAAAAATTCAATTTAAAATCATTTGTTAAGTTAT
131 AAATGTAAAAAAATTCAATTTAAAATCATTTATAAAGTTAT
* * * * * * * *
2902422 AAAATCACTTAAAGTGAGTAACTAGGCTTTCAAAGGCATGAGTGACAAAAAATAGATTTTTGTTG
1 AAAACCACTTAAAATGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTG
* ** * * * ** * **
2902487 TCAATGGATGGCTTTTGCTTCACACTTCCCAATGCAAACATCCAATTAT-ATTCCATTTCAATGA
66 TCAATGGATGGCTTTAGCTTCACGTTTTCTAATGCAAACATTCAATTATGA-TCTGTTTTAACCA
*
2902551 AAAATG-AAAAAAATTCAATTTAAAATCATTT-TAAAATGTTAT
130 GAAATGTAAAAAAATTCAATTTAAAATCATTTAT-AAA-GTTAT
* *
2902593 AAAACCACTTAAAATGAGTGACAAGGCATTT-GAAGGCATGAGTGACTATACATAGACTTTTCTT
1 AAAACCACTTAAAATGAGTAACAAGGC-TTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTT
* * * * * * ** * * * * **
2902657 GTTAGTGGGTGGCTTTTGCTACATGTTAACTGATGCAAACATCCAATTATAATCTGTTTCAATAA
65 GTCAATGGATGGCTTTAGCTTCACGTTTTCTAATGCAAACATTCAATTATGATCTGTTTTAACCA
* * *
2902722 AAAATG-AAAAAAATTTCAATTTAAAATCATTTAT-ATGATTAA
130 GAAATGTAAAAAAA-TTCAATTTAAAATCATTTATAAAG-TTAT
* * * * * * * *
2902764 AAAATCATTTAAAGTGAGTAACAAGGCATTCGAAGGCATGAGTGAGTATAAATGGACTTTGCTTC
1 AAAACCACTTAAAATGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTG
* * * * * * *
2902829 TTAATGGATAGCTTTCGCTTCAC-ATTTCTTGATGTAAACATTCAATTATGTTCTGTTTTAACCA
66 TCAATGGATGGCTTTAGCTTCACGTTTTC-TAATGCAAACATTCAATTATGATCTGTTTTAACCA
* *
2902893 GAAATGTAAAAAAAATTCAATTCAAAATCATTTATAAAGTTCT
130 GAAATGT-AAAAAAATTCAATTTAAAATCATTTATAAAGTTAT
* * * * * ** *
2902936 AAAACAACTTAAAGTGAGTAACTAGGATTTTGAAGGCATGAGCAACTATAAATGGACTTTTCTTG
1 AAAACCACTTAAAATGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTG
* ** * * *
2903001 TCATTGGATGGCTTTCA-CTTCACG-TTTCTCAATGTGAACATTGAATTGTGATCTGTTTTAGCC
66 TCAATGGATGGCTTT-AGCTTCACGTTTTCT-AATGCAAACATTCAATTATGATCTGTTTTAACC
* *
2903064 A-AAA-ATAAAAAACATTCAATTTAAAATCATTTATAAAATTAT
129 AGAAATGTAAAAAA-ATTCAATTTAAAATCATTTATAAAGTTAT
* * * * * *
2903106 AAAACCACTT-AAATCTAATAATAAGGCCTTCGAAGGCATGAATGGCTATAAAT-GCACTTTTCT
1 AAAACCACTTAAAAT-GAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATAG-ACTTTTCT
* * * * *
2903169 TCTCAATGGATGGCTTTCA-CTTCACG-TTTCTCAATGCGAATA-TCCATTGATGATATGTTTTA
64 TGTCAATGGATGGCTTT-AGCTTCACGTTTTCT-AATGCAAACATTCAATT-ATGATCTGTTTTA
* * * *
2903231 ACCAAAAATG-AAGAAAAAATCAATTGAAAATGATTTATAAAGTTAT
126 ACCAGAAATGTAA-AAAAATTCAATTTAAAATCATTTATAAAGTTAT
* * * * * * *
2903277 AAAACCACTTAAAATGAGTGAGAAGGCATTCAAAGGCATGAGTGAATGTAAATGGACTTTTCTTG
1 AAAACCACTTAAAATGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTG
* * * * * *
2903342 TGAATGGATGGCTTTCA-CTTCATC-TTTT-TAGAAGCGAACATTCAATTGTGATCTGCTTTGAC
66 TCAATGGATGGCTTT-AGCTTCA-CGTTTTCTA-ATGCAAACATTCAATTATGATCTGTTTTAAC
**
2903404 CAGAAAT-TAAAAAAAATTCGGTTTAAAATCATTTATAAAGTTAT
128 CAGAAATGT-AAAAAAATTCAATTTAAAATCATTTATAAAGTTAT
* ** * * *
2903448 AAAACCATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTAACTATAAATGGACTTTTTTTG
1 AAAACCACTTAAAATGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTG
* * * * **
2903513 TCAATGGATGGC-TTACGCTTCATGTTTTCCAATGCGAACATTCAATTATGATAT-TTTTAATTA
66 TCAATGGATGGCTTTA-GCTTCACGTTTTCTAATGCAAACATTCAATTATGATCTGTTTTAACCA
*
2903576 GAAATGTAAAAAAATTCAATTAAAAATCATTTATAAAGTTAT
130 GAAATGTAAAAAAATTCAATTTAAAATCATTTATAAAGTTAT
* * * * * * *
2903618 AAAACCACTTAAAGTGAGCAACTAGGATTTCAAAGGCATGAGTGA-TAAAAAATAGACTTTTGTT
1 AAAACCACTTAAAATGAGTAACAAGGCTTTCGAAGGCATGAGTGACT-ATAAATAGACTTTTCTT
* * * *
2903682 GTCAATGGATGGCTTTTGCTTCACG-TTTCTTGATGCAAACATTCAATTAT-ATTCTGTTTCAAT
65 GTCAATGGATGGCTTTAGCTTCACGTTTTC-TAATGCAAACATTCAATTATGA-TCTGTTTTAAC
* * * *
2903745 GAAAAATGAAAAAAAAATCAATTTAAAATCATTCTA-AAATGTTAT
128 CAGAAATGTAAAAAAATTCAATTTAAAATCATT-TATAAA-GTTAT
* * * * *
2903790 AAAACCACTTAAAATGAGTGATAAGGCATTCGAAGGCATGAGTGACTATACATAGACTGTTCTTG
1 AAAACCACTTAAAATGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTG
* *
2903855 TCAGTGGGTGGCTT
66 TCAATGGATGGCTT
2903869 CTGCTATACG
Statistics
Matches: 1321, Mismatches: 250, Indels: 94
0.79 0.15 0.06
Matches are distributed among these distances:
169 22 0.02
170 294 0.22
171 648 0.49
172 346 0.26
173 11 0.01
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.33
Consensus pattern (171 bp):
AAAACCACTTAAAATGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTG
TCAATGGATGGCTTTAGCTTCACGTTTTCTAATGCAAACATTCAATTATGATCTGTTTTAACCAG
AAATGTAAAAAAATTCAATTTAAAATCATTTATAAAGTTAT
Found at i:2903167 original size:513 final size:505
Alignment explanation
Indices: 2902079--2903868 Score: 1767
Period size: 513 Copynumber: 3.5 Consensus size: 505
2902069 GGGTGTTACA
* * * * * * *
2902079 AAAACCACTTAAAATGAGTGACAAGGCATTCGAAGGCATGAATGACTATTAATGGGCTTTTCTTG
1 AAAACCACTT-AAATGAGTAATAAGGCATTCGAAGGCATGAGTGGCTATAAATAGACTTTTCTTG
* * * * * * *
2902144 TGAATGGATGGCTTTCGCTTCACGTTTCTCAAATTG--AACATTCAATTGA-GATCTACTTT-GA
65 TCAATGGATGGCTTTTGCTTCACGTTTCT--GA-TGCAAACATCCAATT-ATAATCT-GTTTCAA
** * * ** * *
2902205 CCAGAAATGAAAAAAGAATTCAGTCCAAAATCATTTATAAAGTTATAAAACCATTTAAAAAGAGT
125 TAAAAAATGAAAAAA-AA-TCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAATGAGT
* * **
2902270 AACAAGGCCTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTATCAATGGATGGCTTGAGCT
188 AACAAGGCATTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCT
* * * * **
2902335 TCATGTTTTCTAATGCAAAAATTCAATTATGATATGTTTTAATTAGAAATGT-AAAAAAATTCAA
253 TCA-CTTTT-TGATGCAAACATTCAATTATGATCTGTTTTAACCAGAAATGTAAAAAAAATTCAA
* * *
2902399 TTTAAAATCATTTGTTAAGTTATAAAATCACTTAAAGTGAGTAACTAGGCTTTCAAAGGCATGAG
316 TTTAAAATCATTTATAAAGTTATAAAA-CACTTAAAGTGAGTAACTAGGCTTTCGAAGGCATGAG
* * * * * * * ** * * *
2902464 TGACAAAAAATAGATTTTTGTTGTCAATGGATGGCTTTTGCTTCACACTTCCCAATGCAAACATC
380 TAACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAATGCGAACATT
* * *
2902529 CAATTAT-ATTCCATTTCAATGAAAAATGAAAAAAATTCAATTTAAAATCATTT-TAAAATGTTA
445 CAATTATGA-T-CTTTTTAATCAAAAAT-AAAAAAATTCAATTTAAAATCATTTATAAAA--TTA
2902592 T
505 T
* * * * *
2902593 AAAACCACTTAAAATGAGTGACAAGGCATTTGAAGGCATGAGTGACTATACATAGACTTTTCTTG
1 AAAACCACTT-AAATGAGTAATAAGGCATTCGAAGGCATGAGTGGCTATAAATAGACTTTTCTTG
* * * * * *
2902658 TTAGTGGGTGGCTTTTGCTACATGTTAACTGATGCAAACATCCAATTATAATCTGTTTCAATAAA
65 TCAATGGATGGCTTTTGCTTCACGTT-TCTGATGCAAACATCCAATTATAATCTGTTTCAATAAA
* * * * * *
2902723 AAATGAAAAAAATTTCAATTTAAAATCATTTAT-ATGATTAAAAAATCATTTAAAGTGAGTAACA
129 AAATGAAAAAAA-ATCAATTTAAAATCATTTATAAAG-TTATAAAACCACTTAAAATGAGTAACA
* * * * *
2902787 AGGCATTCGAAGGCATGAGTGAGTATAAATGGACTTTGCTTCTTAATGGATAGCTTTCGCTTCAC
192 AGGCATTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCAC
* * *
2902852 ATTTCTTGATGTAAACATTCAATTATGTTCTGTTTTAACCAGAAATGTAAAAAAAATTCAATTCA
257 -TTT-TTGATGCAAACATTCAATTATGATCTGTTTTAACCAGAAATGTAAAAAAAATTCAATTTA
* * * *
2902917 AAATCATTTATAAAGTTCTAAAACAACTTAAAGTGAGTAACTAGGATTTTGAAGGCATGAGCAAC
320 AAATCATTTATAAAGTTATAAAAC-ACTTAAAGTGAGTAACTAGGCTTTCGAAGGCATGAGTAAC
* * * *
2902982 TATAAATGGACTTTTCTTGTCATTGGATGGCTTTCACTTCACGTTTCTCAATGTGAACATTGAAT
384 TATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAATGCGAACATTCAAT
* **
2903047 TGTGATCTGTTTTAGCCAAAAATAAAAAACATTCAATTTAAAATCATTTATAAAATTAT
449 TATGATCT-TTTTAATCAAAAATAAAAAA-ATTCAATTTAAAATCATTTATAAAATTAT
* * * *
2903106 AAAACCACTTAAATCTAATAATAAGGCCTTCGAAGGCATGAATGGCTATAAAT-GCACTTTTCTT
1 AAAACCACTTAAAT-GAGTAATAAGGCATTCGAAGGCATGAGTGGCTATAAATAG-ACTTTTCTT
* ** * * * * * * **
2903170 CTCAATGGATGGCTTTCACTTCACGTTTCTCAATGCGAATATCC-ATTGATGATATGTTTTAACC
64 GTCAATGGATGGCTTTTGCTTCACGTTTCT-GATGCAAACATCCAATT-ATAATCTGTTTCAATA
* * * *
2903234 AAAAATGAAGAAAAAATCAATTGAAAATGATTTATAAAGTTATAAAACCACTTAAAATGAGTGAG
127 AAAAATGAA-AAAAAATCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAATGAGTAAC
* * * * * *
2903299 AAGGCATTCAAAGGCATGAGTGAATGTAAATGGACTTTTCTTGTGAATGGATGGCTTTCACTTCA
191 AAGGCATTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCA
* * * * * **
2903364 TCTTTTTAGAAGCGAACATTCAATTGTGATCTGCTTTGACCAGAAAT-TAAAAAAAATTCGGTTT
256 -CTTTTT-GATGCAAACATTCAATTATGATCTGTTTTAACCAGAAATGTAAAAAAAATTCAATTT
* * *
2903428 AAAATCATTTATAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTAA
319 AAAATCATTTATAAAGTTATAAAA-CACTTAAAGTGAGTAACTAGGCTTTCGAAGGCATGAGTAA
* * *
2903493 CTATAAATGGACTTTTTTTGTCAATGGATGGCTTACGCTTCATGTTT-TCCAATGCGAACATTCA
383 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCT-CAATGCGAACATTCA
* * * * *
2903557 ATTATGATATTTTTAATTAGAAATGTAAAAAAATTCAATTAAAAATCATTTATAAAGTTAT
447 ATTATGATCTTTTTAATCA-AAA-ATAAAAAAATTCAATTTAAAATCATTTATAAAATTAT
* * * * *
2903618 AAAACCACTTAAAGTGAGCAACT-AGG-ATTTCAAAGGCATGAGT-GATAAAAAATAGACTTTTG
1 AAAACCACTTAAA-TGAGTAA-TAAGGCA-TTCGAAGGCATGAGTGGCT-ATAAATAGACTTTTC
* *
2903680 TTGTCAATGGATGGCTTTTGCTTCACGTTTCTTGATGCAAACATTCAATTATATTCTGTTTCAAT
62 TTGTCAATGGATGGCTTTTGCTTCACGTTTC-TGATGCAAACATCCAATTATAATCTGTTTCAAT
*
2903745 GAAAAATGAAAAAAAAATCAATTTAAAATCATTCTA-AAATGTTATAAAACCACTTAAAATGAGT
126 AAAAAATG-AAAAAAAATCAATTTAAAATCATT-TATAAA-GTTATAAAACCACTTAAAATGAGT
* * * * * * * *
2903809 GATAAGGCATTCGAAGGCATGAGTGACTATACATAGACTGTTCTTGTCAGTGGGTGGCTT
188 AACAAGGCATTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTT
2903869 CTGCTATACG
Statistics
Matches: 1052, Mismatches: 187, Indels: 75
0.80 0.14 0.06
Matches are distributed among these distances:
511 9 0.01
512 299 0.28
513 469 0.45
514 267 0.25
515 8 0.01
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.33
Consensus pattern (505 bp):
AAAACCACTTAAATGAGTAATAAGGCATTCGAAGGCATGAGTGGCTATAAATAGACTTTTCTTGT
CAATGGATGGCTTTTGCTTCACGTTTCTGATGCAAACATCCAATTATAATCTGTTTCAATAAAAA
ATGAAAAAAAATCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAATGAGTAACAAGGC
ATTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACTTTT
TGATGCAAACATTCAATTATGATCTGTTTTAACCAGAAATGTAAAAAAAATTCAATTTAAAATCA
TTTATAAAGTTATAAAACACTTAAAGTGAGTAACTAGGCTTTCGAAGGCATGAGTAACTATAAAT
GGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAATGCGAACATTCAATTATGATC
TTTTTAATCAAAAATAAAAAAATTCAATTTAAAATCATTTATAAAATTAT
Found at i:2904482 original size:20 final size:20
Alignment explanation
Indices: 2904457--2904496 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
2904447 CTATAAATAT
2904457 CTCATTTCTCCAGCAGCTTC
1 CTCATTTCTCCAGCAGCTTC
*
2904477 CTCATTTTTCCAGCAGCTTC
1 CTCATTTCTCCAGCAGCTTC
2904497 TTATTCTTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.15, C:0.38, G:0.10, T:0.38
Consensus pattern (20 bp):
CTCATTTCTCCAGCAGCTTC
Found at i:2911495 original size:20 final size:20
Alignment explanation
Indices: 2911456--2911495 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
2911446 CTATAAATAT
*
2911456 CTCATTTCTCCAACAGCTTC
1 CTCATTTCTCCAACAACTTC
* *
2911476 CTCATTTTTCCAGCAACTTC
1 CTCATTTCTCCAACAACTTC
2911496 TTGTTCTTCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.20, C:0.38, G:0.05, T:0.38
Consensus pattern (20 bp):
CTCATTTCTCCAACAACTTC
Found at i:2912440 original size:38 final size:38
Alignment explanation
Indices: 2912391--2912572 Score: 245
Period size: 38 Copynumber: 5.0 Consensus size: 38
2912381 GGAGTGCGTG
*
2912391 TGATGATATTGAAATGTGCGAGTAGGTAGTGCACATGA
1 TGATGATATTGAAATGTGCGAGTAGGGAGTGCACATGA
*
2912429 TGATGATATTGAAATGTGC----A-GGAGTG--CGTG-
1 TGATGATATTGAAATGTGCGAGTAGGGAGTGCACATGA
*
2912459 TGATGATATTGAAATGTGCGAGTAGGTAGTGCACATGA
1 TGATGATATTGAAATGTGCGAGTAGGGAGTGCACATGA
2912497 TGATGATATTGAAATGTGCGAGTAGGGAGTGCACATGA
1 TGATGATATTGAAATGTGCGAGTAGGGAGTGCACATGA
* * * *
2912535 TGATGATATTGCATTGTGTGTGTAGGGAGTGCACATGA
1 TGATGATATTGAAATGTGCGAGTAGGGAGTGCACATGA
2912573 GCTGAGTGTG
Statistics
Matches: 127, Mismatches: 9, Indels: 16
0.84 0.06 0.11
Matches are distributed among these distances:
30 19 0.15
31 3 0.02
33 5 0.04
34 2 0.02
35 5 0.04
37 3 0.02
38 90 0.71
ACGTcount: A:0.29, C:0.08, G:0.34, T:0.30
Consensus pattern (38 bp):
TGATGATATTGAAATGTGCGAGTAGGGAGTGCACATGA
Found at i:2912452 original size:68 final size:68
Alignment explanation
Indices: 2912378--2912515 Score: 276
Period size: 68 Copynumber: 2.0 Consensus size: 68
2912368 AATGATGTGG
2912378 GCAGGAGTGCGTGTGATGATATTGAAATGTGCGAGTAGGTAGTGCACATGATGATGATATTGAAA
1 GCAGGAGTGCGTGTGATGATATTGAAATGTGCGAGTAGGTAGTGCACATGATGATGATATTGAAA
2912443 TGT
66 TGT
2912446 GCAGGAGTGCGTGTGATGATATTGAAATGTGCGAGTAGGTAGTGCACATGATGATGATATTGAAA
1 GCAGGAGTGCGTGTGATGATATTGAAATGTGCGAGTAGGTAGTGCACATGATGATGATATTGAAA
2912511 TGT
66 TGT
2912514 GC
1 GC
2912516 GAGTAGGGAG
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 70 1.00
ACGTcount: A:0.29, C:0.08, G:0.34, T:0.29
Consensus pattern (68 bp):
GCAGGAGTGCGTGTGATGATATTGAAATGTGCGAGTAGGTAGTGCACATGATGATGATATTGAAA
TGT
Found at i:2912463 original size:30 final size:30
Alignment explanation
Indices: 2912378--2912477 Score: 119
Period size: 30 Copynumber: 3.1 Consensus size: 30
2912368 AATGATGTGG
2912378 GCAGGAGTGCGTGTGATGATATTGAAATGT
1 GCAGGAGTGCGTGTGATGATATTGAAATGT
*
2912408 GCGAGTAGGTAGTGCACATGATGATGATATTGAAATGT
1 GC----AGG-AGTG--CGTG-TGATGATATTGAAATGT
2912446 GCAGGAGTGCGTGTGATGATATTGAAATGT
1 GCAGGAGTGCGTGTGATGATATTGAAATGT
2912476 GC
1 GC
2912478 GAGTAGGTAG
Statistics
Matches: 60, Mismatches: 2, Indels: 16
0.77 0.03 0.21
Matches are distributed among these distances:
30 21 0.35
31 3 0.05
33 4 0.07
34 6 0.10
35 4 0.07
37 3 0.05
38 19 0.32
ACGTcount: A:0.28, C:0.08, G:0.35, T:0.29
Consensus pattern (30 bp):
GCAGGAGTGCGTGTGATGATATTGAAATGT
Found at i:2914532 original size:172 final size:172
Alignment explanation
Indices: 2914354--2914719 Score: 410
Period size: 172 Copynumber: 2.1 Consensus size: 172
2914344 AAATTGTTCC
* * * * ** *
2914354 AAAATCATTTATAAAGTTATAAAACTATTTCAAGCGAGTAACAAGGCCTTCGAAGGTGTGAGTGA
1 AAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGGAACAAGGCCTTCGAAGGCATAAGTGA
* * * * * * * *
2914419 CTATAAATAGACTTTTCTTGTCAATGGATGGCTTGCGCTTCGCGTTTTTTAATGTGAACATTCAA
66 CAAAAAATAGACTTTTCTTGTCAATGGATGGCTTGCGCATCACGTTTCTCAATGTAAACATCCAA
* * * * * *
2914484 TTATGATCTGTTTTAATTAGAAATGTAAAAAA-AATTCAATTT
131 TTAGGATATATTTCAATGAAAAATG-AAAAAATAATTCAATTT
* * *
2914526 AAAATCATTTATAAAGTTATAAAACCACTTAAAGGGAGGAACTAGGCTTTCGAAGGCATAAGTGA
1 AAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGGAACAAGGCCTTCGAAGGCATAAGTGA
* * * * *
2914591 CAAAAAATGGATTTTTCTTGTCAATGGATGTCTTTCGCATCACGTTTCTCGATGTAAACATCCAA
66 CAAAAAATAGACTTTTCTTGTCAATGGATGGCTTGCGCATCACGTTTCTCAATGTAAACATCCAA
* *
2914656 TTAGGTTATATTTCAATGAAAAATGAAAAAATAATTGAATTT
131 TTAGGATATATTTCAATGAAAAATGAAAAAATAATTCAATTT
* *
2914698 AAAATTATTTAAAAATGTTATA
1 AAAATCATTTATAAA-GTTATA
2914720 GACTTTTCTT
Statistics
Matches: 159, Mismatches: 33, Indels: 3
0.82 0.17 0.02
Matches are distributed among these distances:
171 6 0.04
172 147 0.92
173 6 0.04
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.34
Consensus pattern (172 bp):
AAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGGAACAAGGCCTTCGAAGGCATAAGTGA
CAAAAAATAGACTTTTCTTGTCAATGGATGGCTTGCGCATCACGTTTCTCAATGTAAACATCCAA
TTAGGATATATTTCAATGAAAAATGAAAAAATAATTCAATTT
Found at i:2915057 original size:171 final size:170
Alignment explanation
Indices: 2914720--2921953 Score: 5693
Period size: 171 Copynumber: 42.5 Consensus size: 170
2914710 AAATGTTATA
* * * * ** * * *
2914720 GACTTTTCTTGTGAGTGGGTGGCTTTCGCTAT-ACGCTAACTGATGCGAACATCCAATTATGATA
1 GACTTTTCTTGTCAATGGATGGCTTTCGCT-TCACGTTTCCTGATGCAAACATTCAATTATGATC
* * * ** * * * *
2914784 TATTTCAACTAAAAATGAAAAAAAGTTTGATTTGAAATCATTTAT-ATGACTAAAAAACCATTTA
65 TGTTTTAACTAGAAATGAAAAAAA-TTCAATTTAAAATCATTTATAAAG-TTATAAAACCATTTA
* * * *
2914848 AAGTGAGTAACAAGGCATTCGAAGGTATGAGTGACTATAAATG
128 AAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATG
** * * *
2914891 GACTTTTCTTGTCAATGGATAACTTTCACTTCACGTTTCCTGATGCAAACATTCGATTATGTTCT
1 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTGATGCAAACATTCAATTATGATCT
* * * *
2914956 GTTTTAACTTGAAATGTAAAAAAATTCAACTTAAAATCATTTATAAAGTTATAAAACAACTTAAA
66 GTTTTAACTAGAAATG-AAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAA
* * * ** *
2915021 ACAAATAACTAGGCTTTCGAAGGCATGAACGACTATAAATT
130 GCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATG
* * * * * *
2915062 GACTTTTCTTGTCATTGGATGGCTTTCACTTCATGTTT-CTCGATACAAACATTGAATTGTGATC
1 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCT-GATGCAAACATTCAATTATGATC
* * * * * *
2915126 TGTTTTAGCCATAAATGAAAGAAAATTCAATTGAAAATCATTTACAAAGTTATAAAACCACTTAA
65 TGTTTTAACTAGAAATGAAA-AAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAA
* * * * *
2915191 AGTGAGTAA-TGAGGCTTTCGAAGGCATAAGTGACAAAAAATA
129 AGCGAGTAACT-AGGCTTTCGAAGGCATGAGTGACTATAAATG
* * * * * * * * *
2915233 GACTTTTCTTGTCAATGGATAGCTTTTGCTTCATGTTTCTTAATACGAACATTGAATTATGGTCT
1 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTGATGCAAACATTCAATTATGATCT
* ** * *
2915298 GTTTTAGCTAGAAACAAAAGAAAATGTAAAATTTAAAATCATTTACAAAGTTATAAAACCATTTA
66 GTTTTAACTAGAAATGAAA-AAAAT-T-CAATTTAAAATCATTTATAAAGTTATAAAACCATTTA
* *
2915363 AAGCGAGTAA-TAAGGCCTTCAAAGGCATGAGTGACTATAAATG
128 AAGCGAGTAACT-AGGCTTTCGAAGGCATGAGTGACTATAAATG
* * * *
2915406 CACTTTTCTTGTCAATGAATGGCTTTCGCTTCACGTTT-CTCGATGCAAACATCCAATGATGATC
1 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCT-GATGCAAACATTCAATTATGATC
* * *
2915470 TGTTTTAAC-AAAATATG-AAAAAA-TCAATTGAAAATCATTTATAAAGTTATAAAACCACTTAA
65 TGTTTTAACTAGAA-ATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAA
** * * * * *
2915532 AATGAGTGACCAGGCATTGGAAGGCATGAGTAACTATAAATG
129 AGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATG
* * * * * * ** *
2915574 GATTTTTCTTGTGAATGGATTGCTTTTGCTTCACATTT-CTCGAAGTGAACGTTCAATTATGATC
1 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCT-GATGCAAACATTCAATTATGATC
* * * * * *
2915638 TG-TTTAGACCAGAAATGAAAACAATTCAATCTAAACTCGTTTATGAAGTTATAAAACCATTTAA
65 TGTTTTA-ACTAGAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAA
* * * * * *
2915702 AGCAAGTAACAAGGCCTTCAAAGGAATGAGTGACTATAAATA
129 AGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATG
* * * * * ** *
2915744 GACTTTTCTTGTTAATCGATCGCTTGT-GCTTTATGTTTTTTGAGGCAAACATTCAATTATGATC
1 GACTTTTCTTGTCAATGGATGGCTT-TCGCTTCACGTTTCCTGATGCAAACATTCAATTATGATC
* * * * *
2915808 TATTTTAATTAGAAATGTACAAAATTTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAA
65 TGTTTTAACTAGAAATG-AAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAA
* * * * *
2915873 AGCGAGTAACTAAGTTTTCAAAGGCATGAGTGATTATAGATG
129 AGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATG
* * * * * *
2915915 GACTTTTATTGTCAATGGATGGCTTTCACTTCATGTTTTCTGATGCAAGCATTCAATTATGATAT
1 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTGATGCAAACATTCAATTATGATCT
* * * * *
2915980 GTTTGAACTATAAATGAAAAAAAAATTTAGTTCAAAATCATTTATAAAGTTATAAAACCATTTAA
66 GTTTTAACTAGAAATG--AAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAA
* * ** * *
2916045 AGTGTGTAAAAAGGCCTTCGAAGGCATGAGTGGCTATAAATG
129 AGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATG
* * * * * *
2916087 GACTTTTCTTATCAATGGAT-GCTTTTGCTTCACATTTCCTAATGCAAACATCCAATTATGATTT
1 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTGATGCAAACATTCAATTATGATCT
* **
2916151 GTTTTAACCAGAAATGAAAAAATATTCAATTTAAAATCATTTTATAAAGTTATAAAACCCCTTAA
66 GTTTTAACTAGAAATGAAAAAA-ATTCAATTTAAAATCA-TTTATAAAGTTATAAAACCATTTAA
** * * * * * * *
2916216 AATGAGTGACAAGGCATTT-AAAGGCATAAGTGACCACAAATA
129 AGCGAGTAACTAGGC-TTTCGAAGGCATGAGTGACTATAAATG
* * * * * *
2916258 GACTTTTCTTCTCAATGGGTGGCTTTCG-TTACACGTTTCTTGATGCAAACATCCAATTTTGATG
1 GACTTTTCTTGTCAATGGATGGCTTTCGCTT-CACGTTTCCTGATGCAAACATTCAATTATGATC
* * ** * * * *
2916322 TGTTATAAC-AAAAATGAAAAAAACTTTTGATTTAAAATAATTTCT-AAGACTATAAAACTATTT
65 TGTTTTAACTAGAAATGAAAAAAA--TTCAATTTAAAATCATTTATAAAG-TTATAAAACCATTT
* * * *
2916385 AAAGCAAGTAACTAGCCTTTCAAAGGCATGAGTGACTATAACTG
127 AAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATG
* * ** * * * * *
2916429 TACTTTTCTTGTCAATGGGTGGCTTTCTTTTCATGTTT-CTCAATGCGAACATTGAATTATTATC
1 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCT-GATGCAAACATTCAATTATGATC
* *
2916493 TGCTTTAGA-TAGAAATGAAAGAAAATTTAATTTAAAATCATTTATAAAGTTATAAAACCATTTA
65 TGTTTTA-ACTAGAAATGAAA-AAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTA
* * * *
2916557 AAGCGAGTAA-TAAGGCCTTCAAAGGTATGAATGACTATAAATG
128 AAGCGAGTAACT-AGGCTTTCGAAGGCATGAGTGACTATAAATG
* * * * ** *
2916600 GACTTTTCTTGTCAATGGATGCCTTTCGCTTCACGTTT-GTCAATGTAAATGTTCAATTATGAAC
1 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCT-GATGCAAACATTCAATTATGATC
* * * *
2916664 TGTTTTAACTAGAAATGAAAAAAATTTAGTTCAAAATCATTTATAAAGTTACAAAACCATTTAAA
65 TGTTTTAACTAGAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAA
* *
2916729 GCGAGTAA-TAGGGCCTTCGAAGGCATAAGTGACTATAAATG
130 GCGAGTAACTA-GGCTTTCGAAGGCATGAGTGACTATAAATG
* * * * * ** * *
2916770 GATTTTTTTTATCAATGG-TGGCTTTGGCTTCACATTTCCCAATACAATCATGT-AATTATGATC
1 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTGATGCAAACAT-TCAATTATGATC
* * * * * * * *
2916833 TTTTTTAGCCAAAAATAAAAATAAATGTCAATTTTAAATCATTTATAAGAG-TAAAAAATCATTT
65 TGTTTTAACTAGAAATGAAAA-AAAT-TCAATTTAAAATCATTTATAA-AGTTATAAAACCATTT
* * * * *
2916897 AAAGCGAGT-ACTAGCCTTTTGAAGGTATGAGTGAATATAAATA
127 AAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATG
* * * * *
2916940 GACTTTTCTTGTCAATGGATGGC-TTCACTTCATGTTTCCTGATGCGAACATTGAATTATTATCT
1 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTGATGCAAACATTCAATTATGATCT
** * * *
2917004 GTTTTAACTAGAAATGAAAGAAAATTTGATTTAAAATCATTTATAATGATATAAAACCACTTAAA
66 GTTTTAACTAGAAATGAAA-AAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAA
* * * *
2917069 GCAAGGAACTAGGCTTTC-AGAGGCATGAGTGACAAAAAATG
130 GCGAGTAACTAGGCTTTCGA-AGGCATGAGTGACTATAAATG
* * * * * * * ** *
2917110 GGCTTTTCTT-ACAAATGGATGACTTTCACTTCAGGTTTCGTAATGCAAACACCCAATTATGTTC
1 GACTTTTCTTGTC-AATGGATGGCTTTCGCTTCACGTTTCCTGATGCAAACATTCAATTATGATC
* * * * *
2917174 TGTTTCAACCAAAAAGGAAAAAAAATTCAATTTAAAATCATTTTATAAAGCTATAAAACCATTTA
65 TGTTTTAACTAGAAATG-AAAAAAATTCAATTTAAAATCA-TTTATAAAGTTATAAAACCATTTA
** * * * *
2917239 AAATGAGTGACAAAGCATTT-GAAGGCATGAGTGACTATAAA-A
128 AAGCGAGTAACTAGGC-TTTCGAAGGCATGAGTGACTATAAATG
* * * * * * * * ** *
2917281 AATTTTTTGTTGTAAACGGGTGGCTTT--CTACACATTTATTGATGCAAACATCCAATTAT-AGT
1 GA-CTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTGATGCAAACATTCAATTATGA-T
* * ** ** *
2917343 CTGTTTTAACCAAAAATGAAAAAAATTTGATTTAAAATCATTTAT-AAGAACAAAAAACCATTTA
64 CTGTTTTAACTAGAAATGAAAAAAATTCAATTTAAAATCATTTATAAAG-TTATAAAACCATTTA
** * ** * *
2917407 AAGCGAGTAACTAACCTTTCGGAGATATAAATGACTATAAATG
128 AAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATG
* * * * * ** ** * *
2917450 AACTTTGCTTATCAAAGGATGGCTTTCGCTTCATGTTTCCCAATGTGAACATTCGATTATGATTT
1 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTGATGCAAACATTCAATTATGATCT
* * * * *
2917515 GCTTTTAACCAGAAATGTAAACAAATTCACA-TTAAAATCATTTATAAAGCTATAAAACAACTTA
66 G-TTTTAACTAGAAATG-AAAAAAATTCA-ATTTAAAATCATTTATAAAGTTATAAAACCATTTA
** * *
2917579 AA-TAAGTAACTAGACTTTTGAAGGCATGAGTGACTATAAATG
128 AAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATG
* * * * * *
2917621 GACTTTTCTTGTCAAGGGATGGCTTTCGCTTCATGTTTTCC-AATGCAAACATCCAATTATGTTT
1 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACG-TTTCCTGATGCAAACATTCAATTATGATC
* * * *
2917685 TGTTTCAACCAAAAATGAAAAAACATTCAATTTAAAATCATTTGATAAAGTTATAAAACCACTTA
65 TGTTTTAACTAGAAATGAAAAAA-ATTCAATTTAAAATCATTT-ATAAAGTTATAAAACCATTTA
** * * * * *
2917750 AAATGGGTGACAAGG-TATTCGAAGGTATGAGTGACTATAAATA
128 AAGCGAGTAACTAGGCT-TTCGAAGGCATGAGTGACTATAAATG
* * * * *
2917793 GACTTTTCTTGTCAATGGGTGGTTTTCGCTACACGTTTCCT-ATTGTGAAA-ATCCAATTATGAT
1 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTGA-TG-CAAACATTCAATTATGAT
* * * * * * * *
2917856 CTGTTTTAACCAAAAATAAAAAAAAATCAACTTAAAATAATTTATAAAGTTATAAAACTACTTAA
64 CTGTTTTAACTAGAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAA
* * * * * *
2917921 AACGAGTGAAAT-GACGTTCAAAGGCATGAGTCACTATAAATG
129 AGCGAGT-AACTAGGCTTTCGAAGGCATGAGTGACTATAAATG
* * ** * ** * *
2917963 GACTTTTCTTGTGAATGGATGGCTTTCGCTTCATGTTTCCCAAAGTGAACATTTAATTATGTTCT
1 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTGATGCAAACATTCAATTATGATCT
* * * * *
2918028 GTTTCAACCAAAAATGAAAAAACATTCAATTTAAAATCATTTTATAAAGTTATAAGACTATTTAA
66 GTTTTAACTAGAAATGAAAAAA-ATTCAATTTAAAATCA-TTTATAAAGTTATAAAACCATTTAA
** * * * * *
2918093 AATGAGTGA-TAAAGCATTCGAAGGCATGAGTGACTGTAAATA
129 AGCGAGTAACT-AGGCTTTCGAAGGCATGAGTGACTATAAATG
* * * *** *
2918135 GACTTCTCTTGTCAATGGGTGGCTTTCGCTAT-ACCTTTCCTGATATGAACATCCAATTATGATC
1 GACTTTTCTTGTCAATGGATGGCTTTCGCT-TCACGTTTCCTGATGCAAACATTCAATTATGATC
* * * *
2918199 TTTTTTAACTAAAAATGAAAAATATTTCAATTTAAAATCATTTATAAGAG-TAAAAAACCATTTA
65 TGTTTTAACTAGAAATGAAAAA-AATTCAATTTAAAATCATTTATAA-AGTTATAAAACCATTTA
* * *
2918263 AAGTGAGTAATTAGCCTTGT-GAAGGCATGAGTGACTATAAATG
128 AAGCGAGTAACTAGGCTT-TCGAAGGCATGAGTGACTATAAATG
* * ** * * *
2918306 GACTTTGCTTGTTAATGGATGGCTTT-ATTTCACGTTTCTTGATGCGAACATTGAATTATGATCT
1 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTGATGCAAACATTCAATTATGATCT
* * * * **
2918370 ATTTTAACCA-AAATGTAAAAAAAATTCAATTT---TTC--TTATAAAGTTATAAAACAACATAA
66 GTTTTAACTAGAAATG--AAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAA
* * *
2918429 AGTGAGTAATTAGGCTTTTGAAGGCATGAGTGACTATAAATG
129 AGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATG
* ** ** *
2918471 GACTTTTCTTGTCAATGGATGGCTTTCTCTTCACGTTTCCTGATGTGAATGTTCAATTATGATAT
1 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTGATGCAAACATTCAATTATGATCT
* * * *
2918536 GTTTTAACCAGAAATGAAAAAAAAATTTAGTTCAAAATCATTTATAAAGTTATAAAACCATTTAA
66 GTTTTAACTAGAAATG--AAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAA
* * * *
2918601 AGCAAGTAA-TAAGCCCTTCAAAGGCATGAGTGACT-TAAAT-
129 AGCGAGTAACT-AGGCTTTCGAAGGCATGAGTGACTATAAATG
* * *
2918641 GATCTTTTCTTATCAATGGATGGCTTTCACTTCACGTTT-CTCGATGCGAACATTTC-ATTATGA
1 GA-CTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCT-GATGCAAACA-TTCAATTATGA
*
2918704 TCTGTTTTAACTAGAAATGAAAAAAAAATTCAATTTAAAATCATTTATAAAATTATAAAACCATT
63 TCTGTTTTAACTAGAAATG--AAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATT
* * * * *
2918769 TAAAGCAAGTAACAAGGCATTCGAAGGCATGAGTGGCTATAAATA
126 TAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATG
** ** ** * * * *
2918814 GACTTTTCTTGAT-AATGGATGGCTTTCATTTCACGTTTCCCAATGTGAGCTTTCAATTGTGATA
1 GACTTTTCTTG-TCAATGGATGGCTTTCGCTTCACGTTTCCTGATGCAAACATTCAATTATGATC
* * * * *
2918878 TGTTTTAACTAGAAAT-ATAAAAA---AA-TT-CAAT-A---AGAAAGTTATAAAACAACTTAAA
65 TGTTTTAACTAGAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAA
* * * * * *
2918933 GTGGGTAACAAAGTTTTCGAAGGCATGAGTTACTATAAATG
130 GCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATG
* * ** ** * *
2918974 G---TTTATTGTCAATGGATGTCTTTCGCTTCATATTTCCTGATGCAAACAACCAGTTATGATAT
1 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTGATGCAAACATTCAATTATGATCT
* * * ** ***
2919036 GTTTTAACCAGAAAAGAAAAAACATTCAATTTAAAATC-TTTTTAGGAAGTTATACGACCACCAA
66 GTTTTAACTAGAAATGAAAAAA-ATTCAATTTAAAATCATTTATA--AAGTTATAAAACCATTTA
** * * * *
2919100 AAATGAGTGACAAGGCATTT-GAAGGCATGAGTGACTTTAAATA
128 AAGCGAGTAACTAGGC-TTTCGAAGGCATGAGTGACTATAAATG
* * * *
2919143 GACTTTTCTTGTCAATGGATGGCTTTCGCTACACGTTTCTTGATGCAAACA-TCTAATTATGGTG
1 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTGATGCAAACATTC-AATTATGATC
* ** * * * * *
2919207 TGTTTTTAA--AAAAATGAAATAAAATTTTGATTCAATATAATTTAT-AAGACTATTAAACCATT
65 TG-TTTTAACTAGAAATGAAA-AAAA-TTCAATTTAAAATCATTTATAAAG-TTATAAAACCATT
** *
2919269 TAAAGCGAGTAACTAGGCTTTCGAAGATATGAATGACTATAAATG
126 TAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATG
* * * * * * * *
2919314 GACCTTTCTTATCAATGGATGGCTTT-GCTTCACATTT-CTCAGTGCGAACATCCAATGATCATC
1 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTGA-TGCAAACATTCAATTATGATC
* * * * * *
2919377 TATTTTAACCAAAAATGAGAAACAATTCAATTTAAAATGATTTATAAAGTTATAAAACCACTTAA
65 TGTTTTAACTAGAAATGA-AAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAA
* * * * *
2919442 AACAAGTGACAAGGCATTCGAAGGCATGAGTGACTATAAATG
129 AGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATG
* * * * **
2919484 GACTTTTATTGTGAATGGATGGCTTTCGTTTCACGTTT-CTCGAAGTGAACATTCAATTATGATC
1 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCT-GATGCAAACATTCAATTATGATC
* * * * *
2919548 TCTTTTAA-TCAGAAATGAAAAAAAATTCAGTTCAAAATCATTTATAAAATTTTAAAACCATTTA
65 TGTTTTAACT-AGAAATG-AAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTA
* * * *
2919612 AAGCGAGTAACAAGGCCTTC-ATTGGAATGAGTGACTATAAATG
128 AAGCGAGTAACTAGGCTTTCGA-AGGCATGAGTGACTATAAATG
* * * * * *
2919655 GACTCTTCTTGTCAATAGATGGCTTTTGTTTCACG-TTCCTGATGCGAACATTCAATTAAGATCT
1 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTGATGCAAACATTCAATTATGATCT
* * *
2919719 GTTTTAACTAGAAATGAAAAAAAATTCAATTCAAAATCATTTATAAGGCTATAAAACCATTTAAA
66 GTTTTAACTAGAAATG-AAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAA
* * * *
2919784 GTGAGTAACAAGGCCTTC-ATTA-GAATGAGTGACTATAAATG
130 GCGAGTAACTAGGCTTTCGA--AGGCATGAGTGACTATAAATG
* * * * * *
2919825 GACTTTTCTTGTCAATGGATGGCTTTTGTTTTACGTTTCCTAATGCGAACATTCAATTAAGATCT
1 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTGATGCAAACATTCAATTATGATCT
**
2919890 GTTTTAACTAGAAATGAAAAAAAAATTCAGCTTAAAATCATTTATAAAGTTATAAAACCATTTAA
66 GTTTTAACTAGAAATG--AAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAA
* * * *
2919955 AGCGAGTAACAAGGCCTTCGAAGGAATGACTGACTATAAATG
129 AGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATG
** * * * *
2919997 CTCTTTTCTTGTTAATGGATGGCATTT-GCTTTACGTTTCTTGATGCGAACATTCAATTATGATC
1 GACTTTTCTTGTCAATGGATGGC-TTTCGCTTCACGTTTCCTGATGCAAACATTCAATTATGATC
* * * * *
2920061 TATTTTAACTAGAAATGAAAAAAAATTCAACTCAAAGTCATTTATAAAGTTATAAAACTATTTAA
65 TGTTTTAACTAGAAATG-AAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAA
* * *
2920126 AGCGAGTAACAAGGCCTTT-GAAGGCCTAAGTGACTATAAATG
129 AGCGAGTAACTAGG-CTTTCGAAGGCATGAGTGACTATAAATG
* * * * * * * *
2920168 GACTTTACTTATCCATGGATGGCATTCGCTTCATGTATCCTTATGTGAAA-ATTCAATTATGATC
1 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTGATG-CAAACATTCAATTATGATC
* * * * * * *
2920232 TGTTTTAACCAAAAATGCAAAAAAAGTCAATTTAAAATCATTTACAAAGTTAGAAAACAACTTAA
65 TGTTTTAACTAGAAATG-AAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAA
* * * * * *
2920297 AGCGAGTAACTAAGCTTTTGAAGGTATGAATGACTATAGATA
129 AGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATG
* ** * * *
2920339 GACTTTTCTTGTCAATGGATGACTTTTACATT-ACGTTT-CTCAATGCAAATATCCAATTATGAT
1 GACTTTTCTTGTCAATGGATGGCTTTCGC-TTCACGTTTCCT-GATGCAAACATTCAATTATGAT
* * * * * ** *
2920402 ATGTTTTAACCAAAAATGAAAAAAATGCAATTTAAAATCATTTTCTAAAGTTATAAAATTACTTA
64 CTGTTTTAACTAGAAATGAAAAAAATTCAATTTAAAATCA-TTTATAAAGTTATAAAACCATTTA
** * * * * * * * *
2920467 AAATGAGTGA-TAAGGCATTCAAAGGTATAAGTCATTATAAATA
128 AAGCGAGTAACT-AGGCTTTCGAAGGCATGAGTGACTATAAATG
* * * * ** * * *
2920510 GACTTTTCTTTTCAATGGGTGGCTTTCGCTACACTTTTCCCAATGCATACATCCAATTATGATGT
1 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTGATGCAAACATTCAATTATGATCT
* * ** ** * * *
2920575 GTTTTAACAAAAAATGAAAAGATTTTTTGATTTAAAATAATTTAT-AAGACTATAAAACTATTTA
66 GTTTTAACTAGAAATGAAAA-A-AATTCAATTTAAAATCATTTATAAAG-TTATAAAACCATTTA
* * * * *
2920639 AAGCAAGTAACTAGGCTTTCAAAAGCATAAGCGACTATAAATG
128 AAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATG
* * * * * * *
2920682 GACTTTTCTTGTCAATGGATGGCTTTCACTTCATGTTTCCCGATACGAACATTGAATTATGATTT
1 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTGATGCAAACATTCAATTATGATCT
* * * *
2920747 GTTTTAGCTAGATATGAGAGAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAA
66 GTTTTAACTAGAAATGA-AAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAA
* * * * *
2920812 GTGAGTGACAAGGCCTTT-GAAGGCATGAGTAACTATAAATA
130 GCGAGTAACTAGG-CTTTCGAAGGCATGAGTGACTATAAATG
* ** * * *
2920853 GACTTTTCTTCTCAATGGATGGCTTTTACTTCACGTTT-CTCGATGCGAACATCCAATGATGATC
1 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCT-GATGCAAACATTCAATTATGATC
* * * * *
2920917 TGTTTTAA-TCAAAAATGAAAAAACATTCAATGT-CATTAGATTTATAAAGTTATAAAACCATTT
65 TGTTTTAACT-AGAAATGAAAAAA-ATTCAATTTAAAAT-CATTTATAAAGTTATAAAACCATTT
* *
2920980 AAAGCGAGT-A--A------C-AAGGC--CAGTGACTATAAATA
127 AAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATG
* * * * * * ** * *
2921012 GACTTCTCTTATCAACGGATGGCTTTTGCTTCATGTTTTCAAATGCGAACATTCAATTATGATAT
1 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTGATGCAAACATTCAATTATGATCT
* * * * * *
2921077 GTTTTAACCAGAAATGTAAAAAAATTTAGTTTAAAATCATTTATAAAGTTTTAAAACAACTTAAA
66 GTTTTAACTAGAAATG-AAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAA
* * *
2921142 GCGAGTAATTAGGCTTTCAAAGGTATGAGTGACTATAAATG
130 GCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATG
* * * * * *
2921183 TACTTCTCTTGTCAATGGATGGCTTTTGCTTCATGTTT-CTAGATGCGAACATTCAATTATGATA
1 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCT-GATGCAAACATTCAATTATGATC
* ** * * ** *
2921247 TGTTTTAACCAG-AATGTAAAAGCATTCATTTTAAAATCATTTAT-AAGTTGTAAAATAACTTAA
65 TGTTTTAACTAGAAATG-AAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAA
** * * *
2921310 AATGAGTAACTAGGCTTGT-GAAAGCATAAGTGACTACAAATG
129 AGCGAGTAACTAGGCTT-TCGAAGGCATGAGTGACTATAAATG
* * * * * *
2921352 GACTTCTT-TTGTCAATGGCTTGG-TTTTG-TATAACGTTTCTTAATGCAAACATCCAATTATGA
1 GACTT-TTCTTGTCAATGG-ATGGCTTTCGCT-TCACGTTTCCTGATGCAAACATTCAATTATGA
** * *
2921414 TCTACTTTAACTAAAAATGAAAAAACATTCAATTTAAAA-CGATTTATAAAGTTATAAAACCACT
63 TCTGTTTTAACTAGAAATGAAAAAA-ATTCAATTTAAAATC-ATTTATAAAGTTATAAAACCATT
* ** * ** ** *
2921478 CAAAATGAGTGAGAAGGCATTT-GAAGTTATGACTGACTATAAATG
126 TAAAGCGAGTAACTAGGC-TTTCGAAGGCATGAGTGACTATAAATG
* * * ** ** *
2921523 GACTTTTCTTATGAATGGATGGCTTTCACTTCATATTTCCCAATGCAAACATTCAATTATGATAT
1 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTGATGCAAACATTCAATTATGATCT
** * * * * *
2921588 GTTTTAA-TCA-AAACAAAGAAAAATTCAGTTCAAAATAATTTTTAAAGTTATAAAATCATTTAA
66 GTTTTAACT-AGAAATGAA-AAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAA
* * *
2921651 AGCGAGTAACAAGGCCTTCGAAGGCATGAGTAACTATAAATG
129 AGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATG
* * * * ** *
2921693 CAC-TTTCTTATCAATGGATAGCTTTCGCTTCATGTTT-CTCGATGTTAACA-TCTAATCATGAT
1 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCT-GATGCAAACATTC-AATTATGAT
* * * * * * *
2921755 CTATTTTGACTAAAAATGAGAAAAGAAAACTCAATTGAAAATTATTTATAAAGTTATAAAACCAC
64 CTGTTTTAACTAGAAAT--G-AAA-AAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCAT
* ** * *
2921820 TCAAAATGAG-AGACAAGGCCTTCGAAGGCATGAGTGACTATAAATG
125 TTAAAGCGAGTA-ACTAGGCTTTCGAAGGCATGAGTGACTATAAATG
* * ** * *
2921866 CACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTT-CTCGATGTGAACATCCAATCATGATC
1 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCT-GATGCAAACATTCAATTATGATC
*
2921930 TGTTTTAACCA-AAGATGAAAAAAA
65 TGTTTTAACTAGAA-ATGAAAAAAA
2921954 ACATCCAATC
Statistics
Matches: 5693, Mismatches: 1142, Indels: 457
0.78 0.16 0.06
Matches are distributed among these distances:
156 1 0.00
157 56 0.01
158 5 0.00
159 116 0.02
160 62 0.01
161 5 0.00
162 3 0.00
163 3 0.00
164 9 0.00
165 82 0.01
166 41 0.01
167 31 0.01
168 193 0.03
169 360 0.06
170 1092 0.19
171 2328 0.41
172 985 0.17
173 256 0.04
174 64 0.01
175 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (170 bp):
GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTGATGCAAACATTCAATTATGATCT
GTTTTAACTAGAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAAG
CGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATG
Found at i:2921968 original size:40 final size:39
Alignment explanation
Indices: 2921913--2921992 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 39
2921903 TCTCGATGTG
*
2921913 AACATCCAATCATGATCTGTTTTAACCAAAGATGAAAAAA
1 AACATCCAATCATGATCTGTTTTAACCAAAAAT-AAAAAA
*
2921953 AACATCCAATCATGATTTGTTTTAACCAAAAATAAAAAA
1 AACATCCAATCATGATCTGTTTTAACCAAAAATAAAAAA
2921992 A
1 A
2921993 TTTAACTTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
39 7 0.18
40 31 0.82
ACGTcount: A:0.50, C:0.16, G:0.07, T:0.26
Consensus pattern (39 bp):
AACATCCAATCATGATCTGTTTTAACCAAAAATAAAAAA
Found at i:2922297 original size:168 final size:169
Alignment explanation
Indices: 2921952--2922547 Score: 385
Period size: 168 Copynumber: 3.5 Consensus size: 169
2921942 AGATGAAAAA
* * *
2921952 AAACATCCAATCATGATTTGTTTTAACCAAAAATAAAAAAATTTAACTTAAAATGATTTATAAAG
1 AAACATTCAATTATGATTTGATTTAACCAAAAATAAAAAAATTTAACTTAAAATGATTTATAAAG
* * * *
2922017 TTATAAAACCACTTAAAACGAGTGGCAAGCCATTTGAAGGTATGAGTGAGTATAAATTGACTTTT
66 TTATAAAACCACTTAAAACGAGTAGCAAGCCATTTGAAGGCATGAGTAAGTATAAATTGACATTT
* * * *
2922082 CTTGTGAATGGATGACTTTTGCTTCACATTTTCCAAAGC
131 CTTGTCAATGGATGACTTTCGCATCACAGTTTCCAAAGC
* * * *
2922121 AAACATTCAATTATGATTTGATTTAACGACAAA-AAAAAAA-TTCAGTTCAAAATCG-TTTATAA
1 AAACATTCAATTATGATTTGATTTAACCAAAAATAAAAAAATTTAACTT-AAAAT-GATTTATAA
* * * *
2922183 AGTTATCAAACCATTTAAAATGAGTAAG-AAGGCC-TTTGAAGGCATGAGTAATTATAAA-TGAA
64 AGTTATAAAACCACTTAAAACGAGT-AGCAA-GCCATTTGAAGGCATGAGTAAGTATAAATTG-A
* * *
2922245 CATTTCTTGTCAATGGATGGCTTTCGCATCA-GGTTTCCTGATA-C
126 CATTTCTTGTCAATGGATGACTTTCGCATCACAGTTTCC--AAAGC
** * * * * *
2922289 GGACATTCAATTATG-TTATG-TTT--TCATAAATGCAAAAAAAATTCAATTTAAAATCATTTAT
1 AAACATTCAATTATGATT-TGATTTAACCAAAAAT---AAAAAAATTTAACTTAAAATGATTTAT
* ** * *** * ** * ** * * * *
2922350 AAAGTTCTAAAATAACTTAAAGCGAGTAATTAGGC-TGTCAAACGTTTGGGTGACTATAAATGGA
62 AAAGTTATAAAACCACTTAAAACGAGTAGCAAGCCAT-TTGAAGGCATGAGTAAGTATAAATTGA
* * * * * *
2922414 C-TTTCTTTTCAATGGATGGCTTTCACTTCAC-GTTTCCCGATGC
126 CATTTCTTGTCAATGGATGACTTTCGCATCACAGTTT-CCAAAGC
* * ** * * * * *
2922457 ATACATCCAATTATGATTCAATTTAACAAAAAATGAAAAATAATTCAATTTAAAATCATTTTAAA
1 AAACATTCAATTATGATTTGATTTAACCAAAAAT-AAAAA-AATTTAACTTAAAATGA-TTTATA
*
2922522 AAGTTATAAAACCACTTAAAATGAGT
63 AAGTTATAAAACCACTTAAAACGAGT
2922548 GATAGAGCAT
Statistics
Matches: 330, Mismatches: 71, Indels: 50
0.73 0.16 0.11
Matches are distributed among these distances:
165 4 0.01
167 17 0.05
168 154 0.47
169 102 0.31
170 22 0.07
171 31 0.09
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (169 bp):
AAACATTCAATTATGATTTGATTTAACCAAAAATAAAAAAATTTAACTTAAAATGATTTATAAAG
TTATAAAACCACTTAAAACGAGTAGCAAGCCATTTGAAGGCATGAGTAAGTATAAATTGACATTT
CTTGTCAATGGATGACTTTCGCATCACAGTTTCCAAAGC
Found at i:2922919 original size:275 final size:274
Alignment explanation
Indices: 2922399--2922920 Score: 624
Period size: 275 Copynumber: 1.9 Consensus size: 274
2922389 AAACGTTTGG
* *
2922399 GTGACTATAAATGGACTTTCTTTTCAATGGATGGCTTTCACTTCACGTTTCCCGATGCATACATC
1 GTGACTATAAATGGACTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTCCCGATGCAAACATC
* *
2922464 CAATTATGATTCAATTTAACAAAAAATGAAAAATAATTCAATTTAAAATCATTTTAAAAAGTTAT
66 CAATTATGATTCAATTTAACAAAAAATGAAAAAAAATTCAATTCAAAATCATTTTAAAAAGTTAT
* * * *
2922529 AAAACCACTTAAAATGAGTGATAGAGCATTCAAAGGTATGAGTGACTATAAATAGACTTTTCTTG
131 AAAACAACTTAAAATGAGTAAAAGAGCATTCAAAGGTATGAGCGACTATAAATAGACTTTTCTTG
* ** * *
2922594 TCAACGAGTGGCTTTTGCTGCACTTTTCCCTATGCAAACATCTAATTATGATGTGTTGACAAGGC
196 TCAACGAGTGACTTTCACTGCACGTTTCCCGATGCAAACATCTAATTATGATGTGTTGACAAGGC
2922659 TTTCGAAGGCATGA
261 TTTCGAAGGCATGA
* * * * * **
2922673 GTGACTATAAATGGACTTTTCTTGTGAATTGATGGCTTTCGCTTTATGTTTCTTGATGCAAACAG
1 GTGACTATAAATGGAC-TTTCTTGTCAATGGATGGCTTTCACTTCACGTTTCCCGATGCAAACA-
* * * * * *
2922738 T-CGATTGTGA-TCTATTTTAACAAGAAATGGAAAAAAAATTCAATTCAAACTCA-TTTACAAAG
64 TCCAATTATGATTC-AATTTAACAAAAAAT-GAAAAAAAATTCAATTCAAAATCATTTTAAAAAG
* * * * *
2922800 TTATAAAACAACTTAAAGTGAGTAACAAG-GCTTTCGAAGGTATGAGCGATTATAAATTGACTTT
127 TTATAAAACAACTTAAAATGAGTAA-AAGAGCATTCAAAGGTATGAGCGACTATAAATAGACTTT
* * * *
2922864 TCTTGTCAATG-GATGACTTTCACTTCACGTTTCCCGATGCTAATAT-TGAATTATGAT
191 TCTTGTCAACGAG-TGACTTTCACTGCACGTTTCCCGATGCAAACATCT-AATTATGAT
2922921 CCGTTTTAGC
Statistics
Matches: 206, Mismatches: 35, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
274 20 0.10
275 162 0.79
276 24 0.12
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (274 bp):
GTGACTATAAATGGACTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTCCCGATGCAAACATC
CAATTATGATTCAATTTAACAAAAAATGAAAAAAAATTCAATTCAAAATCATTTTAAAAAGTTAT
AAAACAACTTAAAATGAGTAAAAGAGCATTCAAAGGTATGAGCGACTATAAATAGACTTTTCTTG
TCAACGAGTGACTTTCACTGCACGTTTCCCGATGCAAACATCTAATTATGATGTGTTGACAAGGC
TTTCGAAGGCATGA
Found at i:2923010 original size:171 final size:170
Alignment explanation
Indices: 2922652--2924874 Score: 1744
Period size: 171 Copynumber: 13.0 Consensus size: 170
2922642 TGATGTGTTG
* * *
2922652 ACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTGAATTGATGGCTTTCGCTT
1 ACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTT
* * ** * * * * *
2922717 TATGTTTCTTGATGCAAACAGTCGATTGTGATCTATTTTAA-CAAGAAATGGAAAAAAAATTCAA
66 CACGTTTCCCGATGCTAACATTCAATTATGATCTGTTTTAACCAA-AAAT-GAAAAAAAATTCAA
* * * *
2922781 TTCAAACTCATTTACAAAGTTATAAAACAACTTAAAGTGAGTA
129 TT-AAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTA
* * * * * * *
2922824 ACAAGGCTTTCGAAGGTATGAGCGATTATAAATTGACTTTTCTTGTCAATGGATGACTTTCACTT
1 ACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTT
* * * * * *
2922889 CACGTTTCCCGATGCTAATATTGAATTATGATCCGTTTTAGCCAAAAATGAAAGAATATTCAATT
66 CACGTTTCCCGATGCTAACATTCAATTATGATCTGTTTTAACCAAAAATGAAAAAAAATTCAATT
* * *
2922954 AACAATCATTTATAAAGTTGTATAACCATTTAAAGCGAGTA
131 AA-AATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTA
* * * * *
2922995 ACAAGGCCTTCGAAGGTATGAGTGACTTTAAATAGACTTTTCTTGTCAATGGATAGCTTTTG-TT
1 ACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTT
* * * ** * * * * * *
2923059 ATATGTTTACTAATGCGAACATCCAACTATGATCTGCTGTAACCAAAAATGAAAAAAAAATTTAA
66 -CACGTTTCCCGATGCTAACATTCAATTATGATCTGTTTTAACCAAAAATG-AAAAAAAATTCAA
* * * * * *
2923124 CCTAAAATTATCTAT-AAGACTAAAAAACCATTTAAAGCGAGTA
129 -TTAAAATCATTTATAAAG-TTATAAAACCACTTAAAGCGAGTA
* * * * * *
2923167 ACTAA--CCTTTCGAAGGCATAAGGGACTATGAATGGGA-ATTACTTATCAATGGATGGCTTTCG
1 AC-AAGGCC-TTCGAAGGCATGAGTGACTATAAAT-GGACTTTTCTTGTCAATGGATGGCTTTCG
* * ** * * ** *
2923229 CTTCACGTGT-CCGATG-TGAATATTTGATTATGATCTGTTTTAACCAGAAATGTAAAACTATTG
63 CTTCACGTTTCCCGATGCT-AACATTCAATTATGATCTGTTTTAACCAAAAATGAAAAAAAATTC
** * *
2923292 AATTTAAGCTCATTTATAAAGTTATAAAACAACTTAAAGTGAGTA
127 AA-TTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTA
* * * * *
2923337 ACTAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGAT-GCATTTCACC
1 ACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC-TTTCGCT
* * * * * * * * * *
2923401 TCACATCTCTCAACGCAAACATCCAATTATGGTCCGTTTTAACCAAAAATGAAAAAACATTCAAT
65 TCACGTTTCCCGATGCTAACATTCAATTATGATCTGTTTTAACCAAAAATGAAAAAAAATTCAA-
* * * * * * *
2923466 TTAAGATGATTTATATAGTTATAAAACCACTCAAAACAAGTG
129 TTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTA
* * * * * * * * *
2923508 AGAAGGCATTCAAAGGCATGAATAACTATAACTGGACTTTTCTTATGAATGGATGGCTTTTGCTT
1 ACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTT
* * * ** *
2923573 CATGTTTCCC-AGTGCGAACATTCAATTATGATCTTTTTTAACCAAAAACAAAAAAAAAGTCAAT
66 CACGTTTCCCGA-TGCTAACATTCAATTATGATCTGTTTTAACCAAAAATGAAAAAAAATTCAAT
* * *
2923637 TCAAAATCATTTTTAAAGTTATAAAACCATTTAAAGCGAGCA
130 T-AAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTA
* *
2923679 ACAAGGCCTTCAAAGGCATGAGTGACCATAAATGGACTTTTCTTGTCAATGGATGGCGTTT-GCT
1 ACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC-TTTCGCT
* * * * ** * *
2923743 TCACGTTT-CGGAATGCGAACATTCAATTATGATCTATTTTAACTAAAAGGGAAAATAAATTCAG
65 TCACGTTTCCCG-ATGCTAACATTCAATTATGATCTGTTTTAACCAAAAATGAAAAAAAATTCAA
* * *
2923807 TTCAAAATCATTTATAATGTTATAAAACCATTTAAAGTGAGTA
129 TT-AAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTA
* * * *
2923850 ACAAGGCCTTTGAAGGCATAAGTGACTATAAATGGACTTCTCTTGTAAATGGATGGCTTTCGCTT
1 ACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTT
*** * * * *
2923915 CACGTTTTTGGATG-TGAACATTCAATTATGATCTATTTTTAAACAGAAATGTAAAAAAAAATTG
66 CACGTTTCCCGATGCT-AACATTCAATTATGATCT-GTTTTAACCAAAAATG--AAAAAAAATTC
** ** * *
2923979 GTTTAAAATCA-TTATAAAGTTATAAAATAACTTGAAGCCAGTA
127 AATTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTA
* * * * * * * *
2924022 ACTAGGCTTTCGAAGGTATAAGTAACTATAAATGGACTTTTCTTGTCAATGGCTAGG-TTTTGCA
1 ACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGAT-GGCTTTCGCT
* * * * * * * **
2924086 TCATGTTTCTC-ATGCAAACATCCAATTATGATCCGTTTTAATC-AAAATTAAAAAAAA-AAAAT
65 TCACGTTTCCCGATGCTAACATTCAATTATGATCTGTTTTAACCAAAAATGAAAAAAAATTCAA-
* * ** *
2924148 TTAAAATGATTTATAAAGTTATAAAACCACTCAAAATGAGTG
129 TTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTA
** * * * *
2924190 TGAAGGCATTCAAAGGCATGAGTGACTATAAATGGAC-TTTCTTGTGAATGGATGGCTTTCACTT
1 ACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTT
* ** * * * * *
2924254 CATGTTTCTTGATG-TGAACATTCAACTATGATCTGTTTTAACTAGAAA-CAAAAAACAATTCAG
66 CACGTTTCCCGATGCT-AACATTCAATTATGATCTGTTTTAACCAAAAATGAAAAAA-AATTCAA
* ** *
2924317 TCAAAAATTGTTTATAAAGTTATAAAACCATTTAAAGCGAGTA
129 T-TAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTA
* * * * * * *
2924360 ACAAGGCCTTCAAAGGCATGAATGTCCATAAATAGACTTTTCTTGTCAAT-GAGTAGCTTTTGCT
1 ACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGA-TGGCTTTCGCT
* * * * * * * * * *
2924424 ACACGTTTACTGATGCGAACATCCAACTATGATCTATTTTAACCAAAAATGAAAAACATTTCGAT
65 TCACGTTTCCCGATGCTAACATTCAATTATGATCTGTTTTAACCAAAAATGAAAAAAAATTCAAT
* * * *
2924489 CTAAAAGCATTTATAGGAA--TAAAAAACCATTTAAAAC-AGTA
130 -TAAAATCATTTATA--AAGTTATAAAACCACTTAAAGCGAGTA
* * * * * * *
2924530 ACTAGGCTTTTGAAGGCATGAGCGACTATTAATAGACTTTTCTTGTCAATGGATGGCTTTCACTT
1 ACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTT
* * * ** * * ** *
2924595 CACATTTCCTGATGCTAACATTGAATTATGATCCATTTTAGCCAGAAATGAATGAATATTCAATT
66 CACGTTTCCCGATGCTAACATTCAATTATGATCTGTTTTAACCAAAAATGAAAAAAAATTCAA-T
* * *
2924660 TAAAATCATTTATAAAGTTGTATAACTACTTAAAGCGAGTA
130 TAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTA
* * * ** *
2924701 ACAAGGCCTTCGAAGGCACGAGTGACTATAAATAGACTTTTCTTGTCAATGGGTGATTTTCGCTA
1 ACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTT
* * * * * * * *
2924766 CACGTTTACTGATGCGAACATCCAACTATGATTTGCTTTAACCAAAAATGAAAAAAAAAATCAAT
66 CACGTTTCCCGATGCTAACATTCAATTATGATCTGTTTTAACCAAAAATG-AAAAAAAATTCAAT
* * * * *
2924831 CTAAAATCATTCATAGGACTGA-AAAACCATTTAAAGCGAGTA
130 -TAAAATCATTTATA-AAGTTATAAAACCACTTAAAGCGAGTA
2924873 AC
1 AC
2924875 TAGCCTTTCG
Statistics
Matches: 1605, Mismatches: 391, Indels: 110
0.76 0.19 0.05
Matches are distributed among these distances:
166 2 0.00
167 44 0.03
168 86 0.05
169 16 0.01
170 295 0.18
171 805 0.50
172 321 0.20
173 25 0.02
174 11 0.01
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.32
Consensus pattern (170 bp):
ACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTT
CACGTTTCCCGATGCTAACATTCAATTATGATCTGTTTTAACCAAAAATGAAAAAAAATTCAATT
AAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTA
Found at i:2924593 original size:341 final size:340
Alignment explanation
Indices: 2922652--2925772 Score: 2525
Period size: 341 Copynumber: 9.2 Consensus size: 340
2922642 TGATGTGTTG
* * * * * * *
2922652 ACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTGAATTGATGGCTTTCGCTT
1 ACAAGGCCTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATAGCTTTTGCTA
* * * * * * *
2922717 TATGTTTCTTGATGCAAACAGT-CGATTGTGATCTATTTTAA-CAAGAAATGGAAAAAAAATTCA
66 CACGTTTC-TGATGCGAACA-TCCAATTATGATCTGTTTTAACCAA-AAATGAAAAAAAAATTCA
** * * ** * *
2922780 AT-TCAAACTCATTTACA-AAGTTATAAAACAACTTAAAGTGAGTAACAAGGCTTTCGAAGGTAT
128 ATCT-AAA-AGATTTATAGAA--TATAAAACCACTTAAAACGAGTAACAAGGCATTCGAAGGCAT
* * * * * *
2922843 GAGCGATTATAAATTGACTTTTCTTGTCAATGGATGACTTTCACTTCACGTTTCCCGATGCT-AA
189 GAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATG-TGAA
* * * * * * *
2922907 TATTGAATTATGATCCGTTTTAGCCAAAAATGAAAGAATATTCAA-TTAACAATCATTTATAAAG
253 CATTCAATTATGATCTGTTTTAACCAGAAATGAAAAAAAATTCAATTTAA-AATCATTTATAAAG
* * *
2922971 TTGTATAACCATTTAAAGCGAGTA
317 TTATAAAACCACTTAAAGCGAGTA
* * *
2922995 ACAAGGCCTTCGAAGGTATGAGTGACTTTAAATAGACTTTTCTTGTCAATGGATAGCTTTTGTTA
1 ACAAGGCCTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATAGCTTTTGCTA
* * * * * * * *
2923060 TATGTTTACTAATGCGAACATCCAACTATGATCTGCTGTAACCAAAAATGAAAAAAAAATTTAAC
66 CACGTTT-CTGATGCGAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAAAAATTCAAT
* * * * * * * * *
2923125 CTAAAATTATCTATAAGACTAAAAAACCATTTAAAGCGAGTAACTAA-CCTTTCGAAGGCATAAG
130 CTAAAA-GATTTAT-AGAATATAAAACCACTTAAAACGAGTAAC-AAGGCATTCGAAGGCATGAG
* * * * * * *
2923189 GGACTATGAATGGGA-ATTACTTATCAATGGATGGCTTTCGCTTCACGTGTC-CGATGTGAATAT
192 TGACTATAAAT-GGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGTGAACAT
** * ** * **
2923252 TTGATTATGATCTGTTTTAACCAGAAATGTAAAACTATTGAATTTAAGCTCATTTATAAAGTTAT
256 TCAATTATGATCTGTTTTAACCAGAAATGAAAAAAAATTCAATTTAAAATCATTTATAAAGTTAT
* *
2923317 AAAACAACTTAAAGTGAGTA
321 AAAACCACTTAAAGCGAGTA
* * * * **
2923337 ACTAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGAT-GCATTTCACC
1 ACAAGGCCTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATAGC-TTT-TGC
* * * * * * * *
2923401 T-CACATCTCTCAACGCAAACATCCAATTATGGTCCGTTTTAACCAAAAATG-AAAAAACATTCA
64 TACACGTTTCT-GATGCGAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAAAAATTCA
* * * * * * * * *
2923464 ATTTAAGATGATTTATATAGTTATAAAACCACTCAAAACAAGTGAGAAGGCATTCAAAGGCATGA
128 ATCTAA-AAGATTTATAGA-ATATAAAACCACTTAAAACGAGTAACAAGGCATTCGAAGGCATGA
* * * * * * * * *
2923529 ATAACTATAACTGGACTTTTCTTATGAATGGATGGCTTTTGCTTCATGTTTC-CCAGTGCGAACA
191 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGA-TGTGAACA
* * ** * * *
2923593 TTCAATTATGATCTTTTTTAACCAAAAACAAAAAAAAAGTCAATTCAAAATCATTTTTAAAGTTA
255 TTCAATTATGATCTGTTTTAACCAGAAATGAAAAAAAATTCAATTTAAAATCATTTATAAAGTTA
* *
2923658 TAAAACCATTTAAAGCGAGCA
320 TAAAACCACTTAAAGCGAGTA
* * * * * *
2923679 ACAAGGCCTTCAAAGGCATGAGTGACCATAAATGGACTTTTCTTGTCAATGGATGGCGTTTGCTT
1 ACAAGGCCTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATAGCTTTTGCTA
* * * * * * * *
2923744 CACGTTTCGGAATGCGAACATTCAATTATGATCTATTTTAA-CTAAAAGGGAAAATAAATTCAGT
66 CACGTTTCTG-ATGCGAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAAAAATTCAAT
* * * ** * * *
2923808 -TCAAAATCATTTATA-ATGTTATAAAACCATTTAAAGTGAGTAACAAGGCCTTTGAAGGCATAA
130 CT-AAAA-GATTTATAGA--ATATAAAACCACTTAAAACGAGTAACAAGGCATTCGAAGGCATGA
* * * *
2923871 GTGACTATAAATGGACTTCTCTTGTAAATGGATGGCTTTCGCTTCACGTTTTTGGATGTGAACAT
191 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGTGAACAT
* * **
2923936 TCAATTATGATCTATTTTTAAACAGAAATGTAAAAAAAAATT-GGTTTAAAATCA-TTATAAAGT
256 TCAATTATGATCT-GTTTTAACCAGAAATG--AAAAAAAATTCAATTTAAAATCATTTATAAAGT
** * *
2923999 TATAAAATAACTTGAAGCCAGTA
318 TATAAAACCACTTAAAGCGAGTA
* * * * * * * *
2924022 ACTAGGCTTTCGAAGGTATAAGTAACTATAAATGGACTTTTCTTGTCAATGGCTAGGTTTTGC-A
1 ACAAGGCCTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATAGCTTTTGCTA
* * * * * * *
2924086 TCATGTTTCTCATGCAAACATCCAATTATGATCCGTTTTAATC-AAAATTAAAAAAAAA--AAAT
66 -CACGTTTCTGATGCGAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAAAAATTCAAT
* * * *** *
2924148 TTAAAATGATTTATA-AAGTTATAAAACCACTCAAAATGAGTGTGAAGGCATTCAAAGGCATGAG
130 CTAAAA-GATTTATAGAA--TATAAAACCACTTAAAACGAGTAACAAGGCATTCGAAGGCATGAG
* * * *
2924212 TGACTATAAATGGAC-TTTCTTGTGAATGGATGGCTTTCACTTCATGTTTCTTGATGTGAACATT
192 TGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGTGAACATT
* * * * ** **
2924276 CAACTATGATCTGTTTTAACTAGAAA-CAAAAAACAATTCAGTCAAAAATTGTTTATAAAGTTAT
257 CAATTATGATCTGTTTTAACCAGAAATGAAAAAA-AATTCAATTTAAAATCATTTATAAAGTTAT
*
2924340 AAAACCATTTAAAGCGAGTA
321 AAAACCACTTAAAGCGAGTA
* * * *
2924360 ACAAGGCCTTCAAAGGCATGAATGTCCATAAATAGACTTTTCTTGTCAAT-GAGTAGCTTTTGCT
1 ACAAGGCCTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGA-TAGCTTTTGCT
* * * * *
2924424 ACACGTTTACTGATGCGAACATCCAACTATGATCTATTTTAACCAAAAATG-AAAAACATTTCGA
65 ACACGTTT-CTGATGCGAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAAAAATTCAA
* * * * *
2924488 TCTAAAAGCATTTATAGGAATAAAAAACCATTTAAAAC-AGTAACTAGGCTTTTGAAGGCATGAG
129 TCTAAAAG-ATTTATA-GAATATAAAACCACTTAAAACGAGTAACAAGGCATTCGAAGGCATGAG
* * * * *
2924552 CGACTATTAATAGACTTTTCTTGTCAATGGATGGCTTTCACTTCACATTTC-CTGATGCT-AACA
192 TGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-GATG-TGAACA
* ** * ** * *
2924615 TTGAATTATGATCCATTTTAGCCAGAAATGAATGAATATTCAATTTAAAATCATTTATAAAGTTG
255 TTCAATTATGATCTGTTTTAACCAGAAATGAAAAAAAATTCAATTTAAAATCATTTATAAAGTTA
* *
2924680 TATAACTACTTAAAGCGAGTA
320 TAAAACCACTTAAAGCGAGTA
* * *
2924701 ACAAGGCCTTCGAAGGCACGAGTGACTATAAATAGACTTTTCTTGTCAATGGGT-GATTTTCGCT
1 ACAAGGCCTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATAGCTTTT-GCT
* * * *
2924765 ACACGTTTACTGATGCGAACATCCAACTATGATTTGCTTTAACCAAAAATGAAAAAAAAAATCAA
65 ACACGTTT-CTGATGCGAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAAAAATTCAA
* * * * * * * *
2924830 TCTAAAATCATTCATAGGACTGA-AAAACCATTTAAAGCGAGTAACTAGCCTTTCGAA---AT--
129 TCTAAAA-GATTTATA-GAAT-ATAAAACCACTTAAAACGAGTAACAAGGCATTCGAAGGCATGA
* * **
2924889 GT-AC-AT---T-G------CTTGTTAATGGATGGCTTTCGCTTCACCTTTCTCGATACGAACAT
191 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGTGAACAT
* * * * *
2924942 TCAATTATGATCTGTTTTAAACACAAATGTAAAAATATTCAATTTAAAATAATTTATAAAGTTAT
256 TCAATTATGATCTGTTTTAACCAGAAATGAAAAAAAATTCAATTTAAAATCATTTATAAAGTTAT
* *
2925007 AAAACAACTTAAAGTGAGTA
321 AAAACCACTTAAAGCGAGTA
* * * * **
2925027 ACTAA-GCTTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGGTTTCACC
1 AC-AAGGCCTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATAGCTTT-TGC
** * *** *
2925091 T-CAAATTTCTCGATGCAAACATCCAATTATGATCCCATTTAACCAAAAATGAAAAAACAA-TCA
64 TACACGTTTCT-GATGCGAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAAAAATTCA
* ** * *
2925154 ATTTAAAATGATTTATA-AAGTTATAAAACCACCCAAAACAAGTGAA-AAGGCATTCAAAGGCAT
128 ATCTAAAA-GATTTATAGAA--TATAAAACCACTTAAAACGAGT-AACAAGGCATTCGAAGGCAT
* * * * * *
2925217 GAGTGACTATAACTGAACTTTTCTTGTGAATGGATGGCTTTCACTTCACGTTTC-CTAATGCGAA
189 GAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-GATGTGAA
2925281 CATTCAATTATGATCT-TTTTAAACCAGAAATG-AAAAAAATTC-ATTTCAAAATCATTTATAAA
253 CATTCAATTATGATCTGTTTT-AACCAGAAATGAAAAAAAATTCAATTT-AAAATCATTTATAAA
* * *
2925343 GTTATAAAACCATTTAACGCTAGTA
316 GTTATAAAACCACTTAAAGCGAGTA
* * * *
2925368 ACATGGCCTTCGAAGACATGAGTGACTATAAATGGACTTTTCTTGT-AATTGGATAGCTTTTGTT
1 ACAAGGCCTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAA-TGGATAGCTTTTGCT
* * * * * *
2925432 TCACATTTCTCAATGCGAACATCCAATCATGATCTGTTTTAACCAAAAAAG-AAAAAAAACTCAA
65 ACACGTTTCT-GATGCGAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAAAAATTCAA
* * * *
2925496 T-TGAAAATGATTTATA-AAGTTATGAAACCACTTAAAACGAGTGACAAGGCATTTGAAAGCATG
129 TCT-AAAA-GATTTATAGAA--TATAAAACCACTTAAAACGAGTAACAAGGCATTCGAAGGCATG
* * * * * * *
2925559 AGTGATTATAAATGCACTTTTCTTATCACTAGATGGCTTTCGCTTCATGTTTCTCAATGTGAACA
190 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGTGAACA
* * * * *
2925624 TCCAATCATGATCTGTTTTAACC-GAAAATGAAAAAAAAAACTCAATTAAAAATGATTTATAAAG
255 TTCAATTATGATCTGTTTTAACCAG-AAATG--AAAAAAAATTCAATTTAAAATCATTTATAAAG
* * *
2925688 CTATAAAACCACTTAAAACGAGTG
317 TTATAAAACCACTTAAAGCGAGTA
* * * * *
2925712 ACAAAGCCTTCAAAGGCATGAGTGACTATAAATAGAATTTTCTTTTCAATGGATGGCTTTT
1 ACAAGGCCTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATAGCTTTT
2925773 TGTCACGACC
Statistics
Matches: 2222, Mismatches: 455, Indels: 201
0.77 0.16 0.07
Matches are distributed among these distances:
323 1 0.00
324 1 0.00
325 42 0.02
326 204 0.09
327 9 0.00
328 2 0.00
330 2 0.00
331 2 0.00
332 3 0.00
333 1 0.00
335 7 0.00
336 6 0.00
337 10 0.00
338 94 0.04
339 90 0.04
340 134 0.06
341 599 0.27
342 584 0.26
343 305 0.14
344 111 0.05
345 15 0.01
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.32
Consensus pattern (340 bp):
ACAAGGCCTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATAGCTTTTGCTA
CACGTTTCTGATGCGAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAAAAATTCAATC
TAAAAGATTTATAGAATATAAAACCACTTAAAACGAGTAACAAGGCATTCGAAGGCATGAGTGAC
TATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGTGAACATTCAAT
TATGATCTGTTTTAACCAGAAATGAAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAAC
CACTTAAAGCGAGTA
Found at i:2925065 original size:667 final size:666
Alignment explanation
Indices: 2924230--2925490 Score: 1527
Period size: 667 Copynumber: 1.9 Consensus size: 666
2924220 AATGGACTTT
** * **
2924230 CTTGTGAATGGATGGCTTTCACTTCATGTTTCTTGATGTGAACATTCAACTATGATCTGTTTTAA
1 CTTGTGAATGGATGGCTTTCACTTCACCTTTCTCGATACGAACATTCAACTATGATCTGTTTTAA
* * ** * *
2924295 CTAGAAACAAAAAACAATTCAGTCAAAAATTGTTTATAAAGTTATAAAACCATTTAAAGCGAGTA
66 CTACAAACAAAAAACAATTCAATCAAAAATAATTTATAAAGTTATAAAACAACTTAAAGCGAGTA
* **
2924360 ACAAGGCCTTCAAAGGCATGAATGTCCATAAATAGACTTTTCTTGTCAAT-GAGTAGCTTT-TGC
131 ACAAGGCCTTCAAAGGCATGAATGACCATAAATAGACTTTTCTTGTCAATGGA-TAGCTTTCACC
** * * *
2924423 TACACGTTTACT-GATGCGAACATCCAACTATGAT-CTATTTTAACCAAAAATG-AAAAACATTT
195 T-CAAATTT-CTCGATGCAAACATCCAACTATGATCCCA-TTTAACCAAAAATGAAAAAACA-AT
* *** * * **
2924485 CGATCTAAAA-GCATTTATAGGAA-TAAAAAACCATTTAAAAC-AGT-AACTAGGCTTTTGAAGG
256 CAATCTAAAATG-ATTTATA--AAGTAAAAAACCACCCAAAACAAGTGAA-AAGGCATTCAAAGG
*
2924546 CATGAGCGACTATTAA-T-AGACTTTTCTTGTCAATGGATGGCTTTCACTTCACATTTCCTGATG
317 CATGAGCGACTA-TAACTGA-ACTTTTCTTGTCAATGGATGGCTTTCACTTCACATTTCCTAATG
* * * * *
2924609 CTAACATTGAATTATGATCCATTTT-AGCCAGAAATGAATGAATATTCAATTT-AAAATCATTTA
380 CGAACATTCAATTATGAT-CATTTTAAACCAGAAATGAA-AAAAATTC-ATTTCAAAATCATTTA
* * * *
2924672 TAAAGTTGTATAACTACTTAAAGCGAGTAACAAGGCCTTCGAAGGCACGAGTGACTATAAATAGA
442 TAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCCTTCGAAGACACGAGTGACTATAAATAGA
* * *
2924737 CTTTTCTTGTCAA-TGGGT-GATTTTCGCTACACGTTTACT-GATGCGAACATCCAA-CTATGAT
507 CTTTTCTTGT-AATTGGATAGATTTT-GCTACACATTT-CTCAATGCGAACATCCAATC-ATGAT
* *
2924798 TTGCTTTAACCAAAAATGAAAAAAAAAATCAATCTAAAATCATTCATAGGACTGAAAAACCATTT
568 CTGCTTTAACCAAAAAAGAAAAAAAAAATCAATCTAAAATCATTCATAGGACTGAAAAACCATTT
2924863 AAAGCGAGTAACTAGCCTTTCGAAATGTACATTG
633 AAAGCGAGTAACTAGCCTTTCGAAATGTACATTG
* * *
2924897 CTTGTTAATGGATGGCTTTCGCTTCACCTTTCTCGATACGAACATTCAATTATGATCTGTTTTAA
1 CTTGTGAATGGATGGCTTTCACTTCACCTTTCTCGATACGAACATTCAACTATGATCTGTTTT-A
** * ** *
2924962 AC-ACAAATGTAAAAA-TATTCAATTTAAAATAATTTATAAAGTTATAAAACAACTTAAAGTGAG
65 ACTACAAA-CAAAAAACAATTCAATCAAAAATAATTTATAAAGTTATAAAACAACTTAAAGCGAG
* * * * *
2925025 TAACTAA-GCTTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGGTTTCA
129 TAAC-AAGGCCTTCAAAGGCATGAATGACCATAAATAGACTTTTCTTGTCAATGGATAGCTTTCA
*
2925089 CCTCAAATTTCTCGATGCAAACATCCAATTATGATCCCATTTAACCAAAAATGAAAAAACAATCA
193 CCTCAAATTTCTCGATGCAAACATCCAACTATGATCCCATTTAACCAAAAATGAAAAAACAATCA
* *
2925154 ATTTAAAATGATTTATAAAGTTATAAAACCACCCAAAACAAGTGAAAAGGCATTCAAAGGCATGA
258 ATCTAAAATGATTTATAAAG-TAAAAAACCACCCAAAACAAGTGAAAAGGCATTCAAAGGCATGA
* * *
2925219 GTGACTATAACTGAACTTTTCTTGTGAATGGATGGCTTTCACTTCACGTTTCCTAATGCGAACAT
322 GCGACTATAACTGAACTTTTCTTGTCAATGGATGGCTTTCACTTCACATTTCCTAATGCGAACAT
*
2925284 TCAATTATGATCTTTTTAAACCAGAAATGAAAAAAATTCATTTCAAAATCATTTATAAAGTTATA
387 TCAATTATGATCATTTTAAACCAGAAATGAAAAAAATTCATTTCAAAATCATTTATAAAGTTATA
* * * * * *
2925349 AAACCATTTAACGCTAGTAACATGGCCTTCGAAGACATGAGTGACTATAAATGGACTTTTCTTGT
452 AAACCACTTAAAGCGAGTAACAAGGCCTTCGAAGACACGAGTGACTATAAATAGACTTTTCTTGT
* * * *
2925414 AATTGGATAGCTTTTGTTTCACATTTCTCAATGCGAACATCCAATCATGATCTGTTTTAACCAAA
517 AATTGGATAGATTTTGCTACACATTTCTCAATGCGAACATCCAATCATGATCTGCTTTAACCAAA
2925479 AAAGAAAAAAAA
582 AAAGAAAAAAAA
2925491 CTCAATTGAA
Statistics
Matches: 500, Mismatches: 73, Indels: 42
0.81 0.12 0.07
Matches are distributed among these distances:
665 2 0.00
666 10 0.02
667 361 0.72
668 124 0.25
669 3 0.01
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (666 bp):
CTTGTGAATGGATGGCTTTCACTTCACCTTTCTCGATACGAACATTCAACTATGATCTGTTTTAA
CTACAAACAAAAAACAATTCAATCAAAAATAATTTATAAAGTTATAAAACAACTTAAAGCGAGTA
ACAAGGCCTTCAAAGGCATGAATGACCATAAATAGACTTTTCTTGTCAATGGATAGCTTTCACCT
CAAATTTCTCGATGCAAACATCCAACTATGATCCCATTTAACCAAAAATGAAAAAACAATCAATC
TAAAATGATTTATAAAGTAAAAAACCACCCAAAACAAGTGAAAAGGCATTCAAAGGCATGAGCGA
CTATAACTGAACTTTTCTTGTCAATGGATGGCTTTCACTTCACATTTCCTAATGCGAACATTCAA
TTATGATCATTTTAAACCAGAAATGAAAAAAATTCATTTCAAAATCATTTATAAAGTTATAAAAC
CACTTAAAGCGAGTAACAAGGCCTTCGAAGACACGAGTGACTATAAATAGACTTTTCTTGTAATT
GGATAGATTTTGCTACACATTTCTCAATGCGAACATCCAATCATGATCTGCTTTAACCAAAAAAG
AAAAAAAAAATCAATCTAAAATCATTCATAGGACTGAAAAACCATTTAAAGCGAGTAACTAGCCT
TTCGAAATGTACATTG
Found at i:2925212 original size:171 final size:169
Alignment explanation
Indices: 2924897--2925771 Score: 922
Period size: 171 Copynumber: 5.1 Consensus size: 169
2924887 ATGTACATTG
* * * * *
2924897 CTTGTTAATGGATGGCTTTCGCTTCACCTTTCTCGATACGAACATTCAATTATGATCTGTTTTAA
1 CTTGTCAATGGATGGCTTTCGCTTCACATTTCTCAATGCGAACATCCAATTATGATCTGTTTTAA
* * * * * * **
2924962 ACACAAATGTAAAAATATTCAATTTAAAATAATTTATAAAGTTATAAAACAACTTAAAGTGAGT-
66 CCAAAAATG-AAAAAAAATCAATTTAAAATGATTTATAAAGTTATAAAACCACTTAAAACGAGTG
*
2925026 AACTAA-GCTTTCAAAGGCATGAGTGACTATAAATAGACTTTT
130 AA--AAGGCATTCAAAGGCATGAGTGACTATAAAT-GACTTTT
* * * * * * ***
2925068 CTTGTCAATGGATGGGTTTCACCTCAAATTTCTCGATGCAAACATCCAATTATGATCCCATTTAA
1 CTTGTCAATGGATGGCTTTCGCTTCACATTTCTCAATGCGAACATCCAATTATGATCTGTTTTAA
** *
2925133 CCAAAAATGAAAAAACAATCAATTTAAAATGATTTATAAAGTTATAAAACCACCCAAAACAAGTG
66 CCAAAAATGAAAAAA-AATCAATTTAAAATGATTTATAAAGTTATAAAACCACTTAAAACGAGTG
*
2925198 AAAAGGCATTCAAAGGCATGAGTGACTATAACTGAACTTTT
130 AAAAGGCATTCAAAGGCATGAGTGACTATAAATG-ACTTTT
* * * *
2925239 CTTGTGAATGGATGGCTTTCACTTCACGTTTC-CTAATGCGAACATTCAATTATGATCT-TTTTA
1 CTTGTCAATGGATGGCTTTCGCTTCACATTTCTC-AATGCGAACATCCAATTATGATCTGTTTT-
* * * * ** *
2925302 AACCAGAAATGAAAAAAATTC-ATTTCAAAATCATTTATAAAGTTATAAAACCATTTAACGCTAG
64 AACCAAAAATGAAAAAAAATCAATTT-AAAATGATTTATAAAGTTATAAAACCACTTAAAACGAG
* * * *
2925366 T-AACATGGCCTTCGAAGACATGAGTGACTATAAATGGACTTTT
128 TGAA-AAGGCATTCAAAGGCATGAGTGACTATAAAT-GACTTTT
* * * *
2925409 CTTGT-AATTGGATAGCTTTTGTTTCACATTTCTCAATGCGAACATCCAATCATGATCTGTTTTA
1 CTTGTCAA-TGGATGGCTTTCGCTTCACATTTCTCAATGCGAACATCCAATTATGATCTGTTTTA
* * *
2925473 ACCAAAAAAGAAAAAAAACTCAATTGAAAATGATTTATAAAGTTATGAAACCACTTAAAACGAGT
65 ACCAAAAATGAAAAAAAA-TCAATTTAAAATGATTTATAAAGTTATAAAACCACTTAAAACGAGT
* * *
2925538 GACAAGGCATTTGAAA-GCATGAGTGATTATAAATGCACTTTT
129 GAAAAGGCA-TTCAAAGGCATGAGTGACTATAAATG-ACTTTT
* * * ** * *
2925580 CTTATCACTAGATGGCTTTCGCTTCATGTTTCTCAATGTGAACATCCAATCATGATCTGTTTTAA
1 CTTGTCAATGGATGGCTTTCGCTTCACATTTCTCAATGCGAACATCCAATTATGATCTGTTTTAA
* * *
2925645 CCGAAAATGAAAAAAAAAACTCAATTAAAAATGATTTATAAAGCTATAAAACCACTTAAAACGAG
66 CCAAAAATG--AAAAAAAA-TCAATTTAAAATGATTTATAAAGTTATAAAACCACTTAAAACGAG
* *
2925710 TGACAAA-GCCTTCAAAGGCATGAGTGACTATAAATAGAATTTT
128 TGA-AAAGGCATTCAAAGGCATGAGTGACTATAAAT-GACTTTT
*
2925753 CTTTTCAATGGATGGCTTT
1 CTTGTCAATGGATGGCTTT
2925772 TTGTCACGAC
Statistics
Matches: 586, Mismatches: 95, Indels: 44
0.81 0.13 0.06
Matches are distributed among these distances:
169 8 0.01
170 142 0.24
171 323 0.55
172 16 0.03
173 94 0.16
174 3 0.01
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.32
Consensus pattern (169 bp):
CTTGTCAATGGATGGCTTTCGCTTCACATTTCTCAATGCGAACATCCAATTATGATCTGTTTTAA
CCAAAAATGAAAAAAAATCAATTTAAAATGATTTATAAAGTTATAAAACCACTTAAAACGAGTGA
AAAGGCATTCAAAGGCATGAGTGACTATAAATGACTTTT
Found at i:2927007 original size:44 final size:44
Alignment explanation
Indices: 2926957--2927046 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
2926947 CATTATCTAG
2926957 CCTATCAAGGCAAACAACAGTTTATACATTTTCAACACAAACAC
1 CCTATCAAGGCAAACAACAGTTTATACATTTTCAACACAAACAC
2927001 CCTATCAAGGCAAACAACAGTTTATACATTTTCAACACAAACAC
1 CCTATCAAGGCAAACAACAGTTTATACATTTTCAACACAAACAC
2927045 CC
1 CC
2927047 ATCCAACCAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.42, C:0.29, G:0.07, T:0.22
Consensus pattern (44 bp):
CCTATCAAGGCAAACAACAGTTTATACATTTTCAACACAAACAC
Found at i:2928041 original size:20 final size:20
Alignment explanation
Indices: 2928015--2928060 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
2928005 AATCTTACAT
* *
2928015 TTTTTCACTTGTTTCCTTGAA
1 TTTTACACTT-TTCCCTTGAA
2928036 TTTTCACACTTTTCCCTTGAA
1 TTTT-ACACTTTTCCCTTGAA
2928057 TTTT
1 TTTT
2928061 TCCACCTAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.15, C:0.22, G:0.07, T:0.57
Consensus pattern (20 bp):
TTTTACACTTTTCCCTTGAA
Found at i:2928062 original size:22 final size:22
Alignment explanation
Indices: 2928020--2928060 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
2928010 TACATTTTTT
*
2928020 CACTTGTTTCCTTGAATTTTCA
1 CACTTGTTCCCTTGAATTTTCA
2928042 CACTT-TTCCCTTGAATTTT
1 CACTTGTTCCCTTGAATTTT
2928061 TCCACCTAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.17, C:0.24, G:0.07, T:0.51
Consensus pattern (22 bp):
CACTTGTTCCCTTGAATTTTCA
Found at i:2933256 original size:22 final size:22
Alignment explanation
Indices: 2933214--2933254 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
2933204 TACCTTCTTT
2933214 CACTTGTTTCCTTGAATTTTCA
1 CACTTGTTTCCTTGAATTTTCA
2933236 CACTTG-TTCCTTGAATTTT
1 CACTTGTTTCCTTGAATTTT
2933255 TCCACCTAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.17, C:0.22, G:0.10, T:0.51
Consensus pattern (22 bp):
CACTTGTTTCCTTGAATTTTCA
Found at i:2942397 original size:21 final size:22
Alignment explanation
Indices: 2942363--2942403 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
2942353 TACCTTTTTT
2942363 CACTTGTTTCCTTGAATTTTCA
1 CACTTGTTTCCTTGAATTTTCA
* *
2942385 CACTT-TTTTCTTGAGTTTT
1 CACTTGTTTCCTTGAATTTT
2942404 TCCACCTAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.15, C:0.20, G:0.10, T:0.56
Consensus pattern (22 bp):
CACTTGTTTCCTTGAATTTTCA
Found at i:2948519 original size:171 final size:169
Alignment explanation
Indices: 2948103--2949237 Score: 883
Period size: 171 Copynumber: 6.6 Consensus size: 169
2948093 AGAAATGTAT
* * * * ** *
2948103 AAAAAATTCAATTCAAACTCATTTACAAAGTTATAAAACAACTTAAAGTGAGTAACAAGGCTTTC
1 AAAAAATTCAA-TCAAAATCATTTATAAAGTTATAAAACCATTTAAAACGAGTAACAAGGCCTTC
** * * * * * * * **
2948168 GAAGGCATGAGAAACAATAAATAGAC-TTTCTTGCCAATGGATGGCTTTCACTTCATGTGTCCCG
65 GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTACACGTTTCCTA
* ** ** *
2948232 AT-CTTAACATTTAATTATGATCCGTTTTAGCCAAAAATGA
130 ATGC-GAACATCCAATTATGATCTATTTTAACCAAAAATGA
* * * * * * * * ** * *
2948272 AAGTATATTCAATTTAAAATTATTTATAAAGTTGTATAAGCACTTAAAGTGAGGAATAAGGCCTT
1 AA-AAAATTCAA-TCAAAATCATTTATAAAGTTATAAAACCATTTAAAACGAGTAACAAGGCCTT
* * * * * *
2948337 TGAAGGCATGAGTGACTATAAATAGACTTTTCTTCTTAATGGGTGGCTTTCGCTACACGTTTACT
64 CGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTACACGTTTCCT
* *
2948402 AATGTGAACATCCAACTATGATCTATTTTAACCAAAAATGA
129 AATGCGAACATCCAATTATGATCTATTTTAACCAAAAATGA
** * * * * *
2948443 AAAAAATTTCAATCCAAAATCATTTATAGGGCTA-AAAACCCATTGAAAATGAGTAACTAGGCTT
1 AAAAAA-TTCAAT-CAAAATCATTTATAAAGTTATAAAA-CCATTTAAAACGAGTAACAAGGCCT
* * * *
2948507 TTG-AGAGCATGAGTGACTATAAATGGACTTTTCTTTTCAATGGATGGGTTTCGCTAGACGTTT-
63 TCGAAG-GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTACACGTTTC
*
2948570 CTCAATGCAAACATCCAATTATGAT-TCATTTTAACCAAAAATGA
127 CT-AATGCGAACATCCAATTATGATCT-ATTTTAACCAAAAATGA
* * * * * * * * **
2948614 GAGAACATTCAATGTAAAATGATTTATAAAGTTATAAAACCACTTAGAACGAGTGAGAAGGAGTT
1 -AAAAAATTCAAT-CAAAATCATTTATAAAGTTATAAAACCATTTAAAACGAGTAACAAGGCCTT
* * * * * *
2948679 AGAAGGCATGAGTGACTATAACTGAACTTTTCTTGTGAATGGATGGCTTTCGTTTCACGTTTCCT
64 CGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTACACGTTTCCT
* * * * * * *
2948744 GATGCGAACATTCAATTATAATCTTTTTTAACTAGAAACGAA
129 AATGCGAACATCCAATTATGATCTATTTTAACCAAAAATG-A
* **
2948786 AAAAAAATCAAATCAAAATCATTTATAAAGTTATAAAACCATTTAAATTGAGTAACAAGGCCTTC
1 AAAAAATTC-AATCAAAATCATTTATAAAGTTATAAAACCATTTAAAACGAGTAACAAGGCCTTC
* * *
2948851 GAATGCATGAGTGACTCTAAATGGACTTTTCTTGTCAATGGATAGTG-TTT-GCTTA-ATGTTTC
65 GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGAT-G-GCTTTCGC-TACACGTTTC
* * * * * * *
2948913 CCAAAGTGAACATTCAATTATGATCCATTTTAACCCAAAAGGA
127 CTAATGCGAACATCCAATTATGATCTATTTTAACCAAAAATGA
* * * * *
2948956 AAAACAATTCAGTTTAAAATCATTTATAAAGTTATAAAACAATTTAAAGCGAGTAATAAGGCCTT
1 AAAA-AATTCA-ATCAAAATCATTTATAAAGTTATAAAACCATTTAAAACGAGTAACAAGGCCTT
* * * * * *
2949021 CGAAAGCATGAGTGATTATAAATGGACTTCTCTTGTCAATGGATGACTTTCGCTTCACGTTT-TT
64 CGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTACACGTTTCCT
* * * *
2949085 GGATGCGAACATTCAATTATGATTTGTTTTAA-CAAGAAATGTAA
129 -AATGCGAACATCCAATTATGATCTATTTTAACCAA-AAATG--A
* * * * * * * *
2949129 AAAAAATT-AGTTTAAAATGATTTATAAA-TCTATAAAACAACTTAAAGCGAGTAACTAGGCTTT
1 AAAAAATTCA-ATCAAAATCATTTATAAAGT-TATAAAACCATTTAAAACGAGTAACAAGGCCTT
* * * *
2949192 CAAAGGCGTGAGTGACTATAAATGGACATTTCTTGTCCATGGATGG
64 CGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGG
2949238 GTTTTGTGTA
Statistics
Matches: 771, Mismatches: 166, Indels: 56
0.78 0.17 0.06
Matches are distributed among these distances:
169 2 0.00
170 97 0.13
171 640 0.83
172 26 0.03
173 6 0.01
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.32
Consensus pattern (169 bp):
AAAAAATTCAATCAAAATCATTTATAAAGTTATAAAACCATTTAAAACGAGTAACAAGGCCTTCG
AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTACACGTTTCCTAA
TGCGAACATCCAATTATGATCTATTTTAACCAAAAATGA
Found at i:2948710 original size:342 final size:336
Alignment explanation
Indices: 2948041--2949241 Score: 1063
Period size: 342 Copynumber: 3.5 Consensus size: 336
2948031 GGGCTTGACA
* * ** * * * ** * *
2948041 CTTTTGCTTCACGGTTCTCGATGTAAACATTCGATTATGATCTGTTTTGATTAGAAATGTATAAA
1 CTTTCGCTTCACGTTTCT-GATGCGAACATTCAATTATGATCTATTTTAACCAAAAATG-AAAAA
* * * * * *
2948106 AAATTCAATTCAAACTCATTTACAAAGTTATAAAACAACTTAAAGTGAGTAACAAGGCTTTCGAA
64 AAATTCAA-TCAAAATCATTTATAAAGCTATAAAACCA-TTAAAATGAGTAACTAGGCTTT-GAA
** * * * * * * * * * *
2948171 GGCATGAGAAACAATAAATAGAC-TTTCTTGCCAATGGATGGCTTTCACTTCATGTGTCCC-GAT
126 GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGGTTT-GCTTAACGTTTCCCAAAG
* ** * * * * *
2948234 CTTAACATTTAATTATGATCCGTTTTAGCCAAAAATGAAAGTATATTCAATTTAAAATTATTTAT
190 C-AAACATCCAATTATGATCCATTTTAACCAAAAATG-AAGAACATTCAATTTAAAATCATTTAT
* * * * *
2948299 AAAGTTGTATAAGCACTTAAAGTGAG-GAATAAGGCCTTTGAAGGCATGAGTGACTATAAAT-AG
253 AAAGTTATAAAACCACTTAAAGCGAGTG-ATAAGGCCTTAGAAGGCATGAGTGACTATAAATGA-
* * *
2948362 ACTTTTCTTCTTAATGGGTGG
316 ACTTTTCTTGTCAATGGATGG
* * * * *
2948383 CTTTCGCTACACGTTTACTAATGTGAACATCCAACTATGATCTATTTTAACCAAAAATGAAAAAA
1 CTTTCGCTTCACGTTT-CTGATGCGAACATTCAATTATGATCTATTTTAACCAAAAATGAAAAAA
* **
2948448 ATTTCAATCCAAAATCATTTATAGGGCTA-AAAACCCATTGAAAATGAGTAACTAGGCTTTTG-A
65 AATTCAAT-CAAAATCATTTATAAAGCTATAAAA-CCATT-AAAATGAGTAACTAGGC-TTTGAA
* *
2948511 GAGCATGAGTGACTATAAATGGACTTTTCTTTTCAATGGATGGGTTTCGC-TAGACGTTTCTCAA
126 G-GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGGTTT-GCTTA-ACGTTTCCCAA
* * * *
2948575 TGCAAACATCCAATTATGATTCATTTTAACCAAAAATGAGAGAACATTCAATGTAAAATGATTTA
188 AGCAAACATCCAATTATGATCCATTTTAACCAAAAATGA-AGAACATTCAATTTAAAATCATTTA
* ** *
2948640 TAAAGTTATAAAACCACTTAGAA-CGAGTGAGAAGGAGTTAGAAGGCATGAGTGACTATAACTGA
252 TAAAGTTATAAAACCACTTA-AAGCGAGTGATAAGGCCTTAGAAGGCATGAGTGACTATAAATGA
*
2948704 ACTTTTCTTGTGAATGGATGG
316 ACTTTTCTTGTCAATGGATGG
* * * * * *
2948725 CTTTCGTTTCACGTTTCCTGATGCGAACATTCAATTATAATCTTTTTTAACTAGAAACGAAAAAA
1 CTTTCGCTTCACGTTT-CTGATGCGAACATTCAATTATGATCTATTTTAACCAAAAATGAAAAAA
* * * * * *
2948790 AAATCAAATCAAAATCATTTATAAAGTTATAAAACCATTTAAATTGAGTAACAAGGCCTTCGAAT
65 AATTC-AATCAAAATCATTTATAAAGCTATAAAACCA-TTAAAATGAGTAACTAGG-CTTTGAAG
* * * *
2948855 GCATGAGTGACTCTAAATGGACTTTTCTTGTCAATGGATAGTGTTTGCTTAATGTTTCCCAAAGT
127 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGAT-GGGTTTGCTTAACGTTTCCCAAAGC
* * * * * *
2948920 GAACATTCAATTATGATCCATTTTAACCCAAAAGGAAAAACAATTCAGTTTAAAATCATTTATAA
191 AAACATCCAATTATGATCCATTTTAACCAAAAATGAAGAAC-ATTCAATTTAAAATCATTTATAA
* * * * * * *
2948985 AGTTATAAAACAATTTAAAGCGAGTAATAAGGCCTTCGAAAGCATGAGTGATTATAAATGGACTT
255 AGTTATAAAACCACTTAAAGCGAGTGATAAGGCCTTAGAAGGCATGAGTGACTATAAATGAACTT
* *
2949050 CTCTTGTCAATGGATGA
320 TTCTTGTCAATGGATGG
* * *
2949067 CTTTCGCTTCACGTTTTTGGATGCGAACATTCAATTATGATTTGTTTTAA-CAAGAAATGTAAAA
1 CTTTCGCTTCACGTTTCT-GATGCGAACATTCAATTATGATCTATTTTAACCAA-AAATG-AAAA
* * * * * ** *
2949131 AAAATT-AGTTTAAAATGATTTATAAATCTATAAAACAACTTAAAGCGAGTAACTAGGCTTTCAA
63 AAAATTCA-ATCAAAATCATTTATAAAGCTATAAAACCA-TTAAAATGAGTAACTAGGCTTT-GA
* * *
2949195 AGGCGTGAGTGACTATAAATGGACATTTCTTGTCCATGGATGGGTTT
125 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGGTTT
2949242 TGTGTAAAGC
Statistics
Matches: 694, Mismatches: 138, Indels: 55
0.78 0.16 0.06
Matches are distributed among these distances:
340 9 0.01
341 81 0.12
342 570 0.82
343 34 0.05
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.33
Consensus pattern (336 bp):
CTTTCGCTTCACGTTTCTGATGCGAACATTCAATTATGATCTATTTTAACCAAAAATGAAAAAAA
ATTCAATCAAAATCATTTATAAAGCTATAAAACCATTAAAATGAGTAACTAGGCTTTGAAGGCAT
GAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGGTTTGCTTAACGTTTCCCAAAGCAAACA
TCCAATTATGATCCATTTTAACCAAAAATGAAGAACATTCAATTTAAAATCATTTATAAAGTTAT
AAAACCACTTAAAGCGAGTGATAAGGCCTTAGAAGGCATGAGTGACTATAAATGAACTTTTCTTG
TCAATGGATGG
Found at i:2949206 original size:513 final size:513
Alignment explanation
Indices: 2948040--2949237 Score: 1200
Period size: 513 Copynumber: 2.3 Consensus size: 513
2948030 TGGGCTTGAC
* * * * * * * * ** *
2948040 ACTTTTGCTTCACGGTTCTCGATGTAAACATTCGATTATGATCTGTTTTGATTAGAAATGTATAA
1 ACTTTCGCTACACGTTTCTCAATGCAAACATTCAATTATGATTTGTTTTAACAAGAAATGTAAAA
* * * * * *
2948105 AAAATTCAATTCAAACTCATTTACAAAGTTATAAAACAACTTAAAGTGAGTAACAAGGCTTTCGA
66 AAAATTCAATTTAAAATGATTTATAAAGTTATAAAACAACTTAAAGCGAGTAACAAGGCTTTCAA
** * * *
2948170 AGGCATGAGAAACAATAAAT-AGACTTTCTTGCCAATGGATGGCTTTCACTTCATGTGTCCCGAT
131 AGGCATGAGTGACTATAAATGA-ACTTTCTTGTCAATGGATGGCTTTCACTTCACGTGTCCCGAT
* * * * * ** * * * * *
2948234 CTTAACATTTAATTATGATCCGTTTTAGCCAAAAATGAAAGTATATTCAATTTAAAATTATTTAT
195 CTGAACATTCAATTATAATCCGTTTTAACCAAAAACGAAAAAAAAATCAAATCAAAATCATTTAT
* * * * *
2948299 AAAGTTGTATAAGCACTTAAAGTGAGGAATAAGGCCTTTGAAGGCATGAGTGACTATAAATAGAC
260 AAAGTTATAAAACCACTTAAAGTGAGGAACAAGGCCTTCGAAGGCATGAGTGACTATAAATAGAC
* * * * *
2948364 TTTTCTTCTTAATGGGTGGCTTTCGCTACACGTTTACTAATGTGAACATCCAACTATGATCTATT
325 TTTTCTTCTCAATGGATGGCTTTCGCTACACGTTTACCAAAGTGAACATCCAACTATGATCCATT
* ** * *
2948429 TTAACCAAAAATGAAAAAAATTTCAATCCAAAATCATTTATAGGGCTAAAAACCCATTGAAAATG
390 TTAACCAAAAAGGAAAAAAATTTCAATCCAAAATCATTTATAAAGCTAAAAACCAATTGAAAACG
* * * * *
2948494 AGTAACTAGGCTTTTGAGAGCATGAGTGACTATAAATGGACTTTTCTTTTCAATGGATG
455 AGTAACTAGGCCTTCGAAAGCATGAGTGACTATAAATGGACTTCTCTTGTCAATGGATG
** * * ** *
2948553 GGTTTCGCTAGACGTTTCTCAATGCAAACATCCAATTATGATTCATTTTAACCAA-AAATG-AGA
1 ACTTTCGCTACACGTTTCTCAATGCAAACATTCAATTATGATTTGTTTTAA-CAAGAAATGTAAA
* * * * * * **
2948616 GAACATTCAATGTAAAATGATTTATAAAGTTATAAAACCACTTAGAA-CGAGTGAGAAGGAGTT-
65 AAAAATTCAATTTAAAATGATTTATAAAGTTATAAAACAACTTA-AAGCGAGTAACAAGGCTTTC
* * ** * *
2948679 AGAAGGCATGAGTGACTATAACTGAACTTTTCTTGTGAATGGATGGCTTTCGTTTCACGTTTCCT
129 A-AAGGCATGAGTGACTATAAATGAAC-TTTCTTGTCAATGGATGGCTTTCACTTCACGTGTCCC
** * *
2948744 GATGC-GAACATTCAATTATAATCTTTTTTAACTAGAAACGAAAAAAAAATCAAATCAAAATCAT
192 GAT-CTGAACATTCAATTATAATCCGTTTTAACCAAAAACGAAAAAAAAATCAAATCAAAATCAT
* * * * *
2948808 TTATAAAGTTATAAAACCATTTAAATTGAGTAACAAGGCCTTCGAATGCATGAGTGACTCTAAAT
256 TTATAAAGTTATAAAACCACTTAAAGTGAGGAACAAGGCCTTCGAAGGCATGAGTGACTATAAAT
* * * * * *
2948873 GGACTTTTCTTGTCAATGGATAGTG-TTT-GCTTA-ATGTTTCCCAAAGTGAACATTCAATTATG
321 AGACTTTTCTTCTCAATGGAT-G-GCTTTCGC-TACACGTTTACCAAAGTGAACATCCAACTATG
* * ** *
2948935 ATCCATTTTAACCCAAAAGGAAAAACAA-TTCAGTTTAAAATCATTTATAAAGTTATAAAA-CAA
383 ATCCATTTTAACCAAAAAGGAAAAA-AATTTCAATCCAAAATCATTTATAAAGCTA-AAAACCAA
* * *
2948998 TTTAAAGCGAGTAA-TAAGGCCTTCGAAAGCATGAGTGATTATAAATGGACTTCTCTTGTCAATG
446 TTGAAAACGAGTAACT-AGGCCTTCGAAAGCATGAGTGACTATAAATGGACTTCTCTTGTCAATG
2949062 GATG
510 GATG
* * ** *
2949066 ACTTTCGCTTCACGTTTTTGGATGCGAACATTCAATTATGATTTGTTTTAACAAGAAATGTAAAA
1 ACTTTCGCTACACGTTTCTCAATGCAAACATTCAATTATGATTTGTTTTAACAAGAAATGTAAAA
* *
2949131 AAAATT-AGTTTAAAATGATTTATAAA-TCTATAAAACAACTTAAAGCGAGTAACTAGGCTTTCA
66 AAAATTCAATTTAAAATGATTTATAAAGT-TATAAAACAACTTAAAGCGAGTAACAAGGCTTTCA
* * *
2949194 AAGGCGTGAGTGACTATAAATGGACATTTCTTGTCCATGGATGG
130 AAGGCATGAGTGACTATAAATGAAC-TTTCTTGTCAATGGATGG
2949238 GTTTTGTGTA
Statistics
Matches: 543, Mismatches: 125, Indels: 34
0.77 0.18 0.05
Matches are distributed among these distances:
512 75 0.14
513 445 0.82
514 22 0.04
515 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (513 bp):
ACTTTCGCTACACGTTTCTCAATGCAAACATTCAATTATGATTTGTTTTAACAAGAAATGTAAAA
AAAATTCAATTTAAAATGATTTATAAAGTTATAAAACAACTTAAAGCGAGTAACAAGGCTTTCAA
AGGCATGAGTGACTATAAATGAACTTTCTTGTCAATGGATGGCTTTCACTTCACGTGTCCCGATC
TGAACATTCAATTATAATCCGTTTTAACCAAAAACGAAAAAAAAATCAAATCAAAATCATTTATA
AAGTTATAAAACCACTTAAAGTGAGGAACAAGGCCTTCGAAGGCATGAGTGACTATAAATAGACT
TTTCTTCTCAATGGATGGCTTTCGCTACACGTTTACCAAAGTGAACATCCAACTATGATCCATTT
TAACCAAAAAGGAAAAAAATTTCAATCCAAAATCATTTATAAAGCTAAAAACCAATTGAAAACGA
GTAACTAGGCCTTCGAAAGCATGAGTGACTATAAATGGACTTCTCTTGTCAATGGATG
Found at i:2956002 original size:171 final size:171
Alignment explanation
Indices: 2955240--2958008 Score: 2248
Period size: 171 Copynumber: 16.2 Consensus size: 171
2955230 GATTTAGTTC
* * * * * *
2955240 AAAATCATTTATAAAGTTATAAAACTATTTAGAGCAAGTAACAAGGCCTTCGAAGGCATGAGCGA
1 AAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCCTTCAAAGGCATGAGTGA
* * * * * *
2955305 CTATAAATGGACTTCTCTTGTCAATGAATGGCTTTCGCTTCATGTTTC-CAGATGCAAATATTCA
66 CTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCA-ATGCGAACATTCA
* ** ** *
2955369 ATTATAATCCGTTTTATTCAGAAATGTAAAAAAATTCAATTT
130 ATTATGATCTATTTTAACCAGAAATGAAAAAAAATTCAATTT
* * ** * * * *
2955411 AAAATTATTGATAAAGTTATAAAATAACTTAAAGCGATTAA-ATAGGCTTTCACAA-GCATGGGC
1 AAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACA-AGGCCTTCA-AAGGCATGAGT
* * * ** * * *
2955474 GACTATAAATG--TTTTTCTTGTCAGTGGATGGCCTTCATTTCATGTTTCCTGAA-GCAAACATT
64 GACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTT-CTCAATGCGAACATT
* * * * ***
2955536 GAATTATGACCTGTTTTAGCCAGAAATGAAAGGGAATTCAATTT
128 CAATTATGATCTATTTTAACCAGAAATGAAAAAAAATTCAATTT
* *
2955580 AAAATCATTTATAAAGTTGTAAAACCACTTAAAGCGTGTAACAAGG-CTCTCAAAGGCATGAGTG
1 AAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCCT-TCAAAGGCATGAGTG
* * * * * *
2955644 GCTATAAAT-AGACTTTTTTTGTCAATAGATGGCTTTCGCTTCACGTTTCTCAATGGGAAAATCC
65 ACTATAAATGA-ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAATGCGAACATTC
* *
2955708 AATGATGATCTATTTGAACCA-AAAGTG-AAAAAAATTCAATTT
129 AATTATGATCTATTTTAACCAGAAA-TGAAAAAAAATTCAATTT
* * * * * * * * *
2955750 AAACTGATTTATAAAGTTTTAAAACCACTTAAAACAAGTTACAAGGCATTCGAAGGCATGAGTAA
1 AAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCCTTCAAAGGCATGAGTGA
* * * * * * * *
2955815 CTACAAAT-AGACTTCTCTTGTGAATGGATAGCTTTTGCTTCACATTTCTCAAAGCGAATATTCA
66 CTATAAATGA-ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAATGCGAACATTCA
* * * * *
2955879 ATTGTGATCTACTTTAACCAAAAATGAAAAAAAATTCAGTTC
130 ATTATGATCTATTTTAACCAGAAATGAAAAAAAATTCAATTT
* * * * *
2955921 AAAATCATTTATAAAGTTATAAAACTATTTAAAGCAAATAACAAGGCCTTCGAAGGCATGAGTGA
1 AAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCCTTCAAAGGCATGAGTGA
* * * **
2955986 ATATAAATGAACTTCTCTTGTCAATGGATGGCTTTCGCTTCACATTTCT-AGATGCGAATGTTCA
66 CTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCA-ATGCGAACATTCA
* ** * * *
2956050 ATTATAATCCGTTTTAACCACAAATGTAAAAAAATTTAATTT
130 ATTATGATCTATTTTAACCAGAAATGAAAAAAAATTCAATTT
* * * * *
2956092 AAAATGATTTATAAAGTTATAAAACAACTTAAAGCGAGTAACTAGGCTTTCAAAGGCATGAATGA
1 AAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCCTTCAAAGGCATGAGTGA
* * * *** * * * *
2956157 CTATAAATGGACTTTTGTTGTCAAGGGATGGCTCGAGCTTCATGTTTCTCGATGCAAACATCCAA
66 CTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAATGCGAACATTCAA
* * * * *
2956222 TTGTGATCTAGTTTAACCAAAAATGAAAAACAAGTCAACTTT
131 TTATGATCTATTTTAACCAGAAATGAAAAAAAATTCAA-TTT
* ** ** * ** * * *
2956264 -AGATCATTTTATAAAGTTATAAAACCACTTAAAATGAG-AGGTAGGGAATTCGATGGTATGAGT
1 AAAATCA-TTTATAAAGTTATAAAACCACTTAAAGCGAGTA-ACAAGGCCTTCAAAGGCATGAGT
* * * * * * * * *
2956327 GGCTATAAAT-AGACTTCTCTTATCAATGGGTGGCTTTCGCTACATGTTTCCCGATAC-AACCAT
64 GACTATAAATGA-ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAATGCGAA-CAT
* * * * * * *
2956390 CCAATTATGATGTGTTTTAACAAAAAATGAAAAAAAAATT-GATAT
127 TCAATTATGATCTATTTTAACCAGAAATG-AAAAAAAATTCAATTT
* * * * * * * * *
2956435 AAAAT-AATT-TGAAGACTATCAAACCACTTAAAGCAAGTAATAATGTCTTCAAAGGCATGAATG
1 AAAATCATTTATAAAG-TTATAAAACCACTTAAAGCGAGTAACAAGGCCTTCAAAGGCATGAGTG
* * * * *
2956498 ACTATAAATGCACTTTTCTTGTCCATGGATGGCTTTCGCTTCACGTTTGC-CAAAGTGAAGATTC
65 ACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTT-CTCAATGCGAACATTC
* ** * ** * *
2956562 AATTATGATATGCTTGAAGTAGAAATAAAAAAAAAATTCAGTTT
129 AATTATGATCTATTTTAACCAGAAAT-GAAAAAAAATTCAATTT
* * * * * * * * ** *
2956606 AAAATCATATCTGAAGTTATAAAACCATTTAAAACGAGTGACAAGGCCATCAAATGCACAAATGA
1 AAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCCTTCAAAGGCATGAGTGA
* * * * * * *
2956671 CTATAAATGGACTTTTCTTCTCAATCGATGGCTTTCGCTTCATGTTTCCCTATGCAAACATTCAA
66 CTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAATGCGAACATTCAA
* * * * *
2956736 TTATAATCTGTTTTAACTAGAAATGAAAAAAAAATTCAGTTC
131 TTATGATCTATTTTAACCAGAAATG-AAAAAAAATTCAATTT
* * *
2956778 AAAATCATTTATAAAGTTATAAAACTATTTAACGCGAGTAACAAGGCCTTCAAAGGCATGAGTGA
1 AAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCCTTCAAAGGCATGAGTGA
* * * * **
2956843 CTATAAATGGACTTTTCTTGTCAATGGATGGTTTTCGCTTCACGTTTC-CTGATGTGAACATTTG
66 CTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-AATGCGAACATTCA
* **
2956907 ATTATGAT-TCGTTTTAA-CATGAAATGTTAAAAAATTCAATTT
130 ATTATGATCT-ATTTTAACCA-GAAATGAAAAAAAATTCAATTT
* * * * * ** * * *
2956949 AAATTAATTTATAAAGTTATAAAACAACTTAAAACGATTAAGTAGGCTTTTAAAGGCATGAGCGA
1 AAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCCTTCAAAGGCATGAGTGA
* * * * *
2957014 CTATAAATG--GTTTTCTTGTCAATGGATGGCTTTCACTTCATGTTTCCTC-ATGCTAACATTGA
66 CTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTT-CTCAATGCGAACATTCA
* * **
2957076 ATTATGATCTATTTTAGCTAGAAAT-AAAAGGGAATTCAATTT
130 ATTATGATCTATTTTAACCAGAAATGAAAA-AAAATTCAATTT
* * ** * * * * *
2957118 AAAATCATTTACAGAGTCGTAAAACCACATAAAGCGTGTAACAGGGCCCTCAAAGGCATGAGTGG
1 AAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCCTTCAAAGGCATGAGTGA
* * * * *
2957183 CTATAAAT-AGACTTTTATTGTTAATGGATGGCTTTTGCTTCACGTTTCTCAATGGGAA-AATCT
66 CTATAAATGA-ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAATGCGAACATTC-
* * *
2957246 AATGATGATCTGTTTGAACCA-AAAGTGAAAAAATAATTCAATTT
129 AATTATGATCTATTTTAACCAGAAA-TGAAAAAA-AATTCAATTT
* * * ** * * * * *
2957290 AAAATGATTTATAAA-TTTTTAAACCACTTAAAATGAGTGACAAGACATTCGAAGGCATGAGTAA
1 AAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCCTTCAAAGGCATGAGTGA
* * * * * * * *
2957354 CTACAAATGGACTTCTCTTGTGAATGGATGGC-TTCTGCTTTACGTTTCTTGAA-GCAAATATTC
66 CTATAAATGAACTTTTCTTGTCAATGGATGGCTTTC-GCTTCACGTTTC-TCAATGCGAACATTC
* * ** * * * * *
2957417 AATTGTGATTTGCTTTAGCCAAAAATAAAAAAAAAATTCAGTTC
129 AATTATGATCTATTTTAACCAGAAAT-GAAAAAAAATTCAATTT
* * * *
2957461 AAAATCATTTATAAAGTTATAAAACTATTTAAAGCAAGTAACAAGGCCTTCGAAGGCATGAGTGA
1 AAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCCTTCAAAGGCATGAGTGA
* * * *
2957526 CTATAAATGAACTTCTCTTGTCAATGGATGGCTTTTGCTTCACATTTC-CATATGCGAATATTCA
66 CTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCA-ATGCGAACATTCA
* * *
2957590 ATTATAATCCATTTTAACTAGAAATGTAAAAAAAATT-AATTT
130 ATTATGATCTATTTTAACCAGAAATG-AAAAAAAATTCAATTT
* * * *
2957632 AAAATCATTTATAAAGTTATAAAACTATTTAAAGCAAGTAACAAGGCCTTCGAAGGCATGAGTGA
1 AAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCCTTCAAAGGCATGAGTGA
* * * *
2957697 CTATAAATGAACTTTTCTTGTAAATGGATGGCTTTTGCTTCACATTTC-CATATGCGAATATTCA
66 CTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCA-ATGCGAACATTCA
* * * **
2957761 ATTATAATCCATTTTAACTAGAAATGTTAAAAAATTCAATTT
130 ATTATGATCTATTTTAACCAGAAATGAAAAAAAATTCAATTT
* * * * * *
2957803 AAAATGATTTATAAAGTTATAAAACAACTTAAAGCGAGTAACTAGGCTTTCAAAGACATGAATGA
1 AAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCCTTCAAAGGCATGAGTGA
* * * * * * *
2957868 CTATAAATGGACTTTTGTTGTCAAGGGATGGCTTGCGCTTCATGTTTCTCGATGC-AGACATCCA
66 CTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAATGCGA-ACATTCA
* * * **
2957932 ATTGTGATCTAGTTTAACCAAAAATGAAAACCAATTCAACTTT
130 ATTATGATCTATTTTAACCAGAAATGAAAAAAAATTCAA-TTT
2957975 -AAATCATTTTATAAAGTTATAAAAACCACTTAAA
1 AAAATCA-TTTATAAAGTTAT-AAAACCACTTAAA
2958009 ATGAGAGGCA
Statistics
Matches: 2070, Mismatches: 459, Indels: 136
0.78 0.17 0.05
Matches are distributed among these distances:
168 5 0.00
169 253 0.12
170 277 0.13
171 965 0.47
172 543 0.26
173 27 0.01
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (171 bp):
AAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCCTTCAAAGGCATGAGTGA
CTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAATGCGAACATTCAA
TTATGATCTATTTTAACCAGAAATGAAAAAAAATTCAATTT
Found at i:2956791 original size:514 final size:509
Alignment explanation
Indices: 2955288--2958008 Score: 2056
Period size: 514 Copynumber: 5.3 Consensus size: 509
2955278 TAACAAGGCC
* * *
2955288 TTCGAAGGCATGAGCGACTATAAATGGACTTCTCTTGTCAATGAATGGCTTTCGCTTCATGTTTC
1 TTCGAAGGCATGAGTGACTATAAATGGACTTCTCTTGTCAATGGATGGCTTTCGCTTCACGTTTC
* * * * * * * *
2955353 CAGATGCAAATATTCAATTATAATCCGTTTTATTC-AGAAATG-TAAAAAAATTCAATTTAAAAT
66 CTGATAC-AACATTCAATTATGAT-TGTTTTA-ACAAAAAATGAAAAAAAAATT-AA-TTAAAAT
* * * * * * * *
2955416 TATTGATAAAGTTATAAAATAACTTAAAGCGATTAA-ATAGGCTTTCACAA-GCATGGGCGACTA
126 AATTTATAAAGTTATAAAACAACTTAAAGCAAGTAACA-AGGCCTTCA-AAGGCATGAGTGACTA
* * * * ** ** * * * *
2955479 TAAATG--TTTTTCTTGTCAGTGGATGGCCTTCATTTCATGTTTCCTGAAGCAAACATTGAATTA
189 TAAATGAACTTCTCTTGTCAATGGATGGCTTTCGCTTCACATTTCCAGAAGCGAAGATTCAATTA
** * * * * *** *
2955542 TGACCTGTTTTAGCCAGAAATGAAAGGGAATTCAATTTAAAATCATTTATAAAGTTGTAAAACCA
254 TGATATGCTTTAACTAGAAATAAAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCA
* * * * * *
2955607 CTTAAAGCGTGTAACAAGG-CTCTCAAAGGCATGAGTGGCTATAAATAGACTTTTTTTGTCAATA
319 CTTAAAGCGAGTAACAAGGCCT-TCAAAGGCATGAATGACTATAAATGGACTTTTCTTGTCAATG
* * * * * * * * *
2955671 GATGGCTTTCGCTTCACGTTTCTCAATGGGAAA-ATCCAATGATGATCTATTTGAACCA-AAAGT
383 GATGGCTTTTGCTTCACGTTTCCCTAT-GCAAACATTCAATTATAATCTGTTTTAACCAGAAA-T
* * * ** ** *
2955734 G-AAAAAAATTCAATTTAAACTGATTTATAAAGTTTTAAAACCACTTAAAACAAGTTACAAGGCA
446 GAAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAATGAGAGAC-AGGAA
* * * * * * *
2955798 TTCGAAGGCATGAGTAACTACAAATAGACTTCTCTTGTGAATGGATAGCTTTTGCTTCACATTT-
1 TTCGAAGGCATGAGTGACTATAAATGGACTTCTCTTGTCAATGGATGGCTTTCGCTTCACGTTTC
* * * * ** * *
2955862 CTCAAAGCGAATATTCAATTGTGATCTACTTTAACCAAAAATG-AAAAAAAATTCAGTTCAAAAT
66 CTGATA-C-AACATTCAATTATGAT-TGTTTTAACAAAAAATGAAAAAAAAATT-AATT-AAAAT
* * * * * *
2955926 CATTTATAAAGTTATAAAACTATTTAAAGCAAATAACAAGGCCTTCGAAGGCATGAGTGAATATA
126 AATTTATAAAGTTATAAAACAACTTAAAGCAAGTAACAAGGCCTTCAAAGGCATGAGTGACTATA
* *
2955991 AATGAACTTCTCTTGTCAATGGATGGCTTTCGCTTCACATTTCTAGATGCGAATG-TTCAATTAT
191 AATGAACTTCTCTTGTCAATGGATGGCTTTCGCTTCACATTTCCAGAAGCGAA-GATTCAATTAT
* ** * * * ** * * *
2956055 AATCCGTTTTAACCACAAATGTAAAAAAATTTAATTTAAAATGATTTATAAAGTTATAAAACAAC
255 GATATGCTTTAACTAGAAATAAAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCAC
* * * *
2956120 TTAAAGCGAGTAACTAGGCTTTCAAAGGCATGAATGACTATAAATGGACTTTTGTTGTCAAGGGA
320 TTAAAGCGAGTAACAAGGCCTTCAAAGGCATGAATGACTATAAATGGACTTTTCTTGTCAATGGA
*** * * * * * * *
2956185 TGGCTCGAGCTTCATGTTTCTCGATGCAAACATCCAATTGTGATCTAG-TTTAACCAAAAATGAA
385 TGGCTTTTGCTTCACGTTTCCCTATGCAAACATTCAATTATAATCT-GTTTTAACCAGAAATGAA
* * * **
2956249 AAACAAGTCAACTTT-AGATCATTTTATAAAGTTATAAAACCACTTAAAATGAGAGGTAGGGAA
449 AAAAAATTCAA-TTTAAAATCA-TTTATAAAGTTATAAAACCACTTAAAATGAGAGACA-GGAA
* * * * * * * *
2956312 TTCGATGGTATGAGTGGCTATAAATAGACTTCTCTTATCAATGGGTGGCTTTCGCTACATGTTTC
1 TTCGAAGGCATGAGTGACTATAAATGGACTTCTCTTGTCAATGGATGGCTTTCGCTTCACGTTTC
* * *
2956377 CCGATACAACCATCCAATTATGATGTGTTTTAACAAAAAATGAAAAAAAAATTGATATAAAATAA
66 CTGATACAA-CATTCAATTATGAT-TGTTTTAACAAAAAATGAAAAAAAAATTAAT-TAAAATAA
* * * * * * * *
2956442 -TT-TGAAGACTATCAAACCACTTAAAGCAAGTAATAATGTCTTCAAAGGCATGAATGACTATAA
128 TTTATAAAG-TTATAAAACAACTTAAAGCAAGTAACAAGGCCTTCAAAGGCATGAGTGACTATAA
* * * * *
2956505 ATGCACTTTTCTTGTCCATGGATGGCTTTCGCTTCACGTTTGCCA-AAGTGAAGATTCAATTATG
192 ATGAACTTCTCTTGTCAATGGATGGCTTTCGCTTCACATTT-CCAGAAGCGAAGATTCAATTATG
* * * * * * *
2956569 ATATGCTTGAAGTAGAAATAAAAAAAAAATTCAGTTTAAAATCATATCTGAAGTTATAAAACCAT
256 ATATGCTTTAACTAGAAAT-AAAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCAC
* * * * ** * *
2956634 TTAAAACGAGTGACAAGGCCATCAAATGCACAAATGACTATAAATGGACTTTTCTTCTCAATCGA
320 TTAAAGCGAGTAACAAGGCCTTCAAAGGCATGAATGACTATAAATGGACTTTTCTTGTCAATGGA
* * *
2956699 TGGCTTTCGCTTCATGTTTCCCTATGCAAACATTCAATTATAATCTGTTTTAACTAGAAATGAAA
385 TGGCTTTTGCTTCACGTTTCCCTATGCAAACATTCAATTATAATCTGTTTTAACCAGAAATG-AA
* * * * *** **
2956764 AAAAAATTCAGTTCAAAATCATTTATAAAGTTATAAAACTATTTAACGCGAGTA-ACAAGGCC
449 AAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAATGAG-AGAC-AGGAA
* * *
2956826 TTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGTTTTCGCTTCACGTTTC
1 TTCGAAGGCATGAGTGACTATAAATGGACTTCTCTTGTCAATGGATGGCTTTCGCTTCACGTTTC
** ** ** ** *
2956891 CTGATGTGAACATTTGATTATGATTCGTTTTAACATGAAATG-TTAAAAAATTCAATTTAAATTA
66 CTGAT-ACAACATTCAATTATGATT-GTTTTAACAAAAAATGAAAAAAAAATT-AA-TTAAAATA
* * * ** * * *
2956955 ATTTATAAAGTTATAAAACAACTTAAAACGATTAAGTAGGCTTTTAAAGGCATGAGCGACTATAA
127 ATTTATAAAGTTATAAAACAACTTAAAGCAAGTAACAAGGCCTTCAAAGGCATGAGTGACTATAA
* * * ** ** * * * *
2957020 ATG--GTTTTCTTGTCAATGGATGGCTTTCACTTCATGTTTCCTCATGCTAACATTGAATTATGA
192 ATGAACTTCTCTTGTCAATGGATGGCTTTCGCTTCACATTTCCAGAAGCGAAGATTCAATTATGA
* ** * *** * * ** *
2957083 TCTATTTTAGCTAGAAATAAAAGGGAATTCAATTTAAAATCATTTACAGAGTCGTAAAACCACAT
257 TATGCTTTAACTAGAAATAAAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTT
* * * * * * * *
2957148 AAAGCGTGTAACAGGGCCCTCAAAGGCATGAGTGGCTATAAATAGACTTTTATTGTTAATGGATG
322 AAAGCGAGTAACAAGGCCTTCAAAGGCATGAATGACTATAAATGGACTTTTCTTGTCAATGGATG
* * * * * *
2957213 GCTTTTGCTTCACGTTTCTCAATGGGAAA-A-TCTAATGATGATCTGTTTGAACCA-AAAGTGAA
387 GCTTTTGCTTCACGTTTCCCTAT-GCAAACATTC-AATTATAATCTGTTTTAACCAGAAA-TGAA
* * * * *
2957275 AAAATAATTCAATTTAAAATGATTTATAAA-TTTTTAAACCACTTAAAATGAGTGACAAGACA
449 AAAA-AATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAATGAGAGACAGGA-A
* * * *
2957337 TTCGAAGGCATGAGTAACTACAAATGGACTTCTCTTGTGAATGGATGGC-TTCTGCTTTACGTTT
1 TTCGAAGGCATGAGTGACTATAAATGGACTTCTCTTGTCAATGGATGGCTTTC-GCTTCACGTTT
* * * * * * * *
2957401 CTTGA-AGCAAATATTCAATTGTGATTTGCTTTAGCCAAAAATAAAAAAAAAATTCAGTTCAAAA
65 CCTGATA-C-AACATTCAATTATGA-TTGTTTTAACAAAAAATGAAAAAAAAATT-AATT-AAAA
* * * *
2957465 TCATTTATAAAGTTATAAAACTATTTAAAGCAAGTAACAAGGCCTTCGAAGGCATGAGTGACTAT
125 TAATTTATAAAGTTATAAAACAACTTAAAGCAAGTAACAAGGCCTTCAAAGGCATGAGTGACTAT
* * * *
2957530 AAATGAACTTCTCTTGTCAATGGATGGCTTTTGCTTCACATTTCCATATGCGAATATTCAATTAT
190 AAATGAACTTCTCTTGTCAATGGATGGCTTTCGCTTCACATTTCCAGAAGCGAAGATTCAATTAT
* *
2957595 -A-ATCCATTTTAACTAGAAATGTAAAAAAAATT-AATTTAAAATCATTTATAAAGTTATAAAAC
255 GATATGC--TTTAACTAGAAAT-AAAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAAC
* * * * * * *
2957657 TATTTAAAGCAAGTAACAAGGCCTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTGTAAAT
317 CACTTAAAGCGAGTAACAAGGCCTTCAAAGGCATGAATGACTATAAATGGACTTTTCTTGTCAAT
* * * * ** *
2957722 GGATGGCTTTTGCTTCACATTTCCATATGCGAATATTCAATTATAATCCATTTTAACTAGAAATG
382 GGATGGCTTTTGCTTCACGTTTCCCTATGCAAACATTCAATTATAATCTGTTTTAACCAGAAATG
** * * ** **
2957787 TTAAAAAATTCAATTTAAAATGATTTATAAAGTTATAAAACAACTTAAAGCGAGTA-ACTAGGCT
447 AAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAATGAG-AGAC-AGGAA
* * * * * * * *
2957851 TTCAAAGACATGAATGACTATAAATGGACTTTTGTTGTCAAGGGATGGCTTGCGCTTCATGTTT-
1 TTCGAAGGCATGAGTGACTATAAATGGACTTCTCTTGTCAATGGATGGCTTTCGCTTCACGTTTC
* * * * ** *
2957915 CTCGATGCAGACATCCAATTGTGATCTAG-TTTAACCAAAAATG-AAAACCAATTCAACTTTAAA
66 CT-GATACA-ACATTCAATTATGAT-T-GTTTTAACAAAAAATGAAAAAAAAATT-AA-TTAAAA
* *
2957978 TCATTTTATAAAGTTATAAAAACCACTTAAA
125 T-AATTTATAAAGTTAT-AAAACAACTTAAA
2958009 ATGAGAGGCA
Statistics
Matches: 1723, Mismatches: 420, Indels: 131
0.76 0.18 0.06
Matches are distributed among these distances:
509 7 0.00
510 153 0.09
511 113 0.07
512 417 0.24
513 248 0.14
514 673 0.39
515 108 0.06
516 4 0.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (509 bp):
TTCGAAGGCATGAGTGACTATAAATGGACTTCTCTTGTCAATGGATGGCTTTCGCTTCACGTTTC
CTGATACAACATTCAATTATGATTGTTTTAACAAAAAATGAAAAAAAAATTAATTAAAATAATTT
ATAAAGTTATAAAACAACTTAAAGCAAGTAACAAGGCCTTCAAAGGCATGAGTGACTATAAATGA
ACTTCTCTTGTCAATGGATGGCTTTCGCTTCACATTTCCAGAAGCGAAGATTCAATTATGATATG
CTTTAACTAGAAATAAAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAG
CGAGTAACAAGGCCTTCAAAGGCATGAATGACTATAAATGGACTTTTCTTGTCAATGGATGGCTT
TTGCTTCACGTTTCCCTATGCAAACATTCAATTATAATCTGTTTTAACCAGAAATGAAAAAAAAT
TCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAATGAGAGACAGGAA
Found at i:2958135 original size:683 final size:678
Alignment explanation
Indices: 2955288--2958135 Score: 1805
Period size: 683 Copynumber: 4.2 Consensus size: 678
2955278 TAACAAGGCC
** * * *
2955288 TTCGAAGGCATGAGCGACTATAAATGGACTTCTCTTGTCAATGAATGGCTTTCGCTTCATGTTTC
1 TTCGAAGGCATGAATGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTC
* * * * * * * * *
2955353 CAGATGCAAATATTCAATT-ATAATCCGTTTTATTCAGAAATGTAAAAAAATTCAATTTAAAATT
66 CCGATACAAACATTCAATTGATAATCTGTTTTA--AAAAAATG-AAAAAAATTCAGTTCAAAATC
* * * * * * *
2955417 ATTGATAAAGTTATAAAA-TAACTTAAAGCGATTAA-ATAGGCTTTCACAA-GCATGGGCGACTA
128 ATTTATAAAGTTATAAAACT-ATTTAAAGCAAGTAACA-AGGCCTTCA-AAGGCATGAGTGACTA
* * * ** ** ** * * *
2955479 TAAATG--TTTTTCTTGTCAGTGGATGGCCTTCATTTCATGTTTCCTGAAGCAAACATTGAATTA
190 TAAATGAACTTCTCTTGTCAATGGATGGTTTTCGCTTCACATTTCCTGATGCGAACATTCAATTA
* * * ** * *
2955542 TGA-CCTGTTTTAGCCA-GAAATG-AAAGGGAATTCAATTTAAAATCATTTATAAAGTTGTAAAA
255 TAATCC-ATTTTA-ACATGAAATGTAAA-AAAATTCAATTTAAAATAATTTATAAAGTTATAAAA
* * ** * * * *
2955604 CCACTTAAAGCGTGTAACAAGG-CTCTCAAAGGCATGAGTGGCTATAAATAGACTTTTTTTGTCA
317 CAACTTAAAACAAGTAACAAGGCCT-TCAAAGGCATGAGCGACTATAAAT-G-CTTTTCTTGTAA
* * * * * * * * * * *
2955668 ATAGATGGCTTTCGCTTCACGTTT-CTCAATGGGAAAATCCAATGATGATCTATTTGAACCA-AA
379 ATGGATGGCTTTCACTTCACATTTCCTC-ATGCGAACATTCAATTATAATCCATTTTAACTAGAA
* * * * ** * * * * * *
2955731 AGTGAAAAAAATTCAATTTAAACTGATTTATAAAGTTTTAAAACCACTTAAAACAAGTTACAAGG
443 A-T-AAAAGAATTCAATTTAAAATCATTTACAAAGTCATAAAACAACATAAAGCGAGTAACAGGG
** * * * * * * * * * * ** *
2955796 CATTCGAAGGCATGAGTAACTACAAATAGACTTCTCTTGTGAATGGATAGCTTTTGCTTCACATT
506 CCCTCAAAGACATGAATGACTATAAATAGACTTTTATTGTCAAGGGATGGCTTGCGCTTCACGTT
* * * * * * *
2955861 TCTCAAAGCGAATATTCAATTG-TGATCTACTTT-AACCAAAAATGAAAAAA-AATTCAGTTCAA
571 TCTCAATGAGAAAATCCAA-TGATGATCT-GTTTGAACCAAAAATGAAAAAACAATTCAATTTAA
* * * * * * *
2955923 AATCATTTATAAAGTTATAAAACTA-TTTAAA-GCAAATAACAAGGCC
634 AATCATTTATAAATTTA-AAAACCACTTAAAATG-AGA-GACAAGACA
* * * * * **
2955969 TTCGAAGGCATGAGTGAATATAAATGAACTTCTCTTGTCAATGGATGGCTTTCGCTTCACATTTC
1 TTCGAAGGCATGAATGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTC
** * * ** * * * * * *
2956034 TAGATGCGAATGTTCAATT-ATAATCCGTTTTAACCACAAATGTAAAAAAATTTAATTTAAAATG
66 CCGATACAAACATTCAATTGATAATCTGTTTTAA--AAAAATG-AAAAAAATTCAGTTCAAAATC
* * * * * *
2956098 ATTTATAAAGTTATAAAACAACTTAAAGCGAGTAACTAGGCTTTCAAAGGCATGAATGACTATAA
128 ATTTATAAAGTTATAAAACTATTTAAAGCAAGTAACAAGGCCTTCAAAGGCATGAGTGACTATAA
* * * * * *** ** * * * *
2956163 ATGGACTTTTGTTGTCAAGGGATGGCTCGAGCTTCATGTTT-CTCGATGCAAACATCCAATTGTG
193 ATGAACTTCTCTTGTCAATGGATGGTTTTCGCTTCACATTTCCT-GATGCGAACATTCAATTATA
* * * * * *
2956227 ATCTAGTTTAACCA-AAAATG-AAAAACAAGTCAACTTT-AGATCATTTTATAAAGTTATAAAAC
257 ATCCATTTTAA-CATGAAATGTAAAAA-AATTCAA-TTTAAAAT-AATTTATAAAGTTATAAAAC
* ** ** * ** * * * * * * * *
2956289 CACTTAAAATGAG-AGGTAGGGAATTCGATGGTATGAGTGGCTATAAATAGACTTCTCTTATCAA
318 AACTTAAAACAAGTA-ACAAGGCCTTCAAAGGCATGAGCGACTATAAAT-G-CTTTTCTTGTAAA
* * * ** * * * *** * *
2956353 TGGGTGGCTTTCGCTACATGTTTCC-CGATAC-AACCATCCAATTATGATGTGTTTTAACAAAAA
380 TGGATGGCTTTCACTTCACATTTCCTC-ATGCGAA-CATTCAATTATAATCCATTTTAACTAGAA
* * * * * * * * * * * *
2956416 ATGAAAAAAAAATT-GATATAAAATAATTT--GAAGACTATCAAACCACTTAAAGCAAGTAATAA
443 AT---AAAAGAATTCAATTTAAAATCATTTACAAAGTC-ATAAAACAACATAAAGCGAGTAACAG
* * * * * * * *
2956478 TGTCTTCAAAGGCATGAATGACTATAAAT-GCACTTTTCTTGTCCATGGATGGCTTTCGCTTCAC
504 GGCCCTCAAAGACATGAATGACTATAAATAG-ACTTTTATTGTCAAGGGATGGCTTGCGCTTCAC
* * * * * * * ** * * * *
2956542 GTTTGC-CAAAGTGAAGATTCAATTATGATATGCTTGAAGTAGAAATAAAAAAAAAATTCAGTTT
568 GTTT-CTCAATGAGAAAATCCAATGATGATCTGTTTGAACCAAAAATGAAAAAACAATTCAATTT
* * * * * * * *
2956606 AAAATCATATCTGAAGTTATAAAACCATTTAAAACGAGTGACAAGGCCA
632 AAAATCATTTATAAATTTA-AAAACCACTTAAAATGAGAGACAA-GACA
* * ** * * *
2956655 -TCAAATGCACAAATGACTATAAATGGACTTTTCTTCTCAATCGATGGCTTTCGCTTCATGTTTC
1 TTCGAAGGCATGAATGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTC
* * *
2956719 CCTATGCAAACATTCAATT-ATAATCTGTTTTAACTAGAAATGAAAAAAAAATTCAGTTCAAAAT
66 CCGATACAAACATTCAATTGATAATCTGTTTTAA--AAAAATG--AAAAAAATTCAGTTCAAAAT
* *
2956783 CATTTATAAAGTTATAAAACTATTTAACGCGAGTAACAAGGCCTTCAAAGGCATGAGTGACTATA
127 CATTTATAAAGTTATAAAACTATTTAAAGCAAGTAACAAGGCCTTCAAAGGCATGAGTGACTATA
* * * * ** *
2956848 AATGGACTTTTCTTGTCAATGGATGGTTTTCGCTTCACGTTTCCTGATGTGAACATTTGATTATG
192 AATGAACTTCTCTTGTCAATGGATGGTTTTCGCTTCACATTTCCTGATGCGAACATTCAATTATA
* * * *
2956913 ATTCGTTTTAACATGAAATGTTAAAAAATTCAATTTAAATTAATTTATAAAGTTATAAAACAACT
257 ATCCATTTTAACATGAAATGTAAAAAAATTCAATTTAAAATAATTTATAAAGTTATAAAACAACT
* * ** * * * *
2956978 TAAAACGATTAAGTAGGCTTTTAAAGGCATGAGCGACTATAAATGGTTTTCTTGTCAATGGATGG
322 TAAAACAAGTAACAAGGCCTTCAAAGGCATGAGCGACTATAAATGCTTTTCTTGTAAATGGATGG
** * * * * *
2957043 CTTTCACTTCATGTTTCCTCATGCTAACATTGAATTATGATCTATTTTAGCTAGAAATAAAAGGG
387 CTTTCACTTCACATTTCCTCATGCGAACATTCAATTATAATCCATTTTAACTAGAAATAAAA--G
* * * *
2957108 AATTCAATTTAAAATCATTTACAGAGTCGTAAAACCACATAAAGCGTGTAACAGGGCCCTCAAAG
450 AATTCAATTTAAAATCATTTACAAAGTCATAAAACAACATAAAGCGAGTAACAGGGCCCTCAAAG
* * * * * ** *
2957173 GCATGAGTGGCTATAAATAGACTTTTATTGTTAATGGATGGCTTTTGCTTCACGTTTCTCAATGG
515 ACATGAATGACTATAAATAGACTTTTATTGTCAAGGGATGGCTTGCGCTTCACGTTTCTCAATGA
* * * *
2957238 GAAAATCTAATGATGATCTGTTTGAACCAAAAGTGAAAAAATAATTCAATTTAAAATGATTTATA
580 GAAAATCCAATGATGATCTGTTTGAACCAAAAATGAAAAAACAATTCAATTTAAAATCATTTATA
** *
2957303 AATTTTTAAACCACTTAAAATGAGTGACAAGACA
645 AATTTAAAAACCACTTAAAATGAGAGACAAGACA
* * * * * * * *
2957337 TTCGAAGGCATGAGTAACTACAAATGGACTTCTCTTGTGAATGGATGGCTTCTGCTTTACGTTTC
1 TTCGAAGGCATGAATGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTC
** * * * * **
2957402 TTGA-AGCAAATATTCAATTG-TGATTTGCTTTAGCCAAAAATAAAAAAAAAATTCAGTTCAAAA
66 CCGATA-CAAACATTCAATTGATAATCTGTTTTA---AAAAA-ATGAAAAAAATTCAGTTCAAAA
*
2957465 TCATTTATAAAGTTATAAAACTATTTAAAGCAAGTAACAAGGCCTTCGAAGGCATGAGTGACTAT
126 TCATTTATAAAGTTATAAAACTATTTAAAGCAAGTAACAAGGCCTTCAAAGGCATGAGTGACTAT
*
2957530 AAATGAACTTCTCTTGTCAATGGATGGCTTTT-GCTTCACATTTCCAT-ATGCGAATATTCAATT
191 AAATGAACTTCTCTTGTCAATGGATGG-TTTTCGCTTCACATTTCC-TGATGCGAACATTCAATT
*
2957593 ATAATCCATTTTAAC-TAGAAATGTAAAAAAAATT-AATTTAAAATCATTTATAAAGTTATAAAA
254 ATAATCCATTTTAACAT-GAAATGT-AAAAAAATTCAATTTAAAATAATTTATAAAGTTATAAAA
* * * * *
2957656 CTATTTAAAGCAAGTAACAAGGCCTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTGTAAA
317 CAACTTAAAACAAGTAACAAGGCCTTCAAAGGCATGAGCGACTATAAATG--CTTTTCTTGTAAA
** *
2957721 TGGATGGCTTTTGCTTCACATTTCCAT-ATGCGAATATTCAATTATAATCCATTTTAACTAGAAA
380 TGGATGGCTTTCACTTCACATTTCC-TCATGCGAACATTCAATTATAATCCATTTTAACTAGAAA
* * * *
2957785 TGTTAAAA-AATTCAATTTAAAATGATTTATAAAGTTATAAAACAACTTAAAGCGAGTAACTA-G
444 ---TAAAAGAATTCAATTTAAAATCATTTACAAAGTCATAAAACAACATAAAGCGAGTAAC-AGG
** * * *
2957848 GCTTTCAAAGACATGAATGACTATAAATGGACTTTTGTTGTCAAGGGATGGCTTGCGCTTCATGT
505 GCCCTCAAAGACATGAATGACTATAAATAGACTTTTATTGTCAAGGGATGGCTTGCGCTTCACGT
* * *
2957913 TTCTCGATGCAG-ACATCCAATTG-TGATCTAGTTT-AACCAAAAATG-AAAACCAATTCAACTT
570 TTCTCAATG-AGAAAATCCAA-TGATGATCT-GTTTGAACCAAAAATGAAAAAACAATTCAA-TT
* * *
2957974 T-AAATCATTTTATAAAGTTATAAAAACCACTTAAAATGAGAGGCAGGGCA
631 TAAAATCA-TTTATAAA-TT-TAAAAACCACTTAAAATGAGAGACAAGACA
** * * * * * * *
2958024 TTTTATGGTATGAATGGCTATAAATCGACTTTTCTTGTCAATGGGTGGATTTTGCTACATGTTTC
1 TTCGAAGGCATGAATGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTC
*
2958089 CCGATACAAACA-TCGAATTGAT-ATGTGTTTTAAAAAAATGAAAAAAA
66 CCGATACAAACATTC-AATTGATAATCTGTTTTAAAAAAATGAAAAAAA
2958136 AAATTGATTT
Statistics
Matches: 1721, Mismatches: 374, Indels: 142
0.77 0.17 0.06
Matches are distributed among these distances:
680 6 0.00
681 170 0.10
682 10 0.01
683 463 0.27
684 390 0.23
685 400 0.23
686 176 0.10
687 99 0.06
688 7 0.00
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.33
Consensus pattern (678 bp):
TTCGAAGGCATGAATGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTC
CCGATACAAACATTCAATTGATAATCTGTTTTAAAAAAATGAAAAAAATTCAGTTCAAAATCATT
TATAAAGTTATAAAACTATTTAAAGCAAGTAACAAGGCCTTCAAAGGCATGAGTGACTATAAATG
AACTTCTCTTGTCAATGGATGGTTTTCGCTTCACATTTCCTGATGCGAACATTCAATTATAATCC
ATTTTAACATGAAATGTAAAAAAATTCAATTTAAAATAATTTATAAAGTTATAAAACAACTTAAA
ACAAGTAACAAGGCCTTCAAAGGCATGAGCGACTATAAATGCTTTTCTTGTAAATGGATGGCTTT
CACTTCACATTTCCTCATGCGAACATTCAATTATAATCCATTTTAACTAGAAATAAAAGAATTCA
ATTTAAAATCATTTACAAAGTCATAAAACAACATAAAGCGAGTAACAGGGCCCTCAAAGACATGA
ATGACTATAAATAGACTTTTATTGTCAAGGGATGGCTTGCGCTTCACGTTTCTCAATGAGAAAAT
CCAATGATGATCTGTTTGAACCAAAAATGAAAAAACAATTCAATTTAAAATCATTTATAAATTTA
AAAACCACTTAAAATGAGAGACAAGACA
Found at i:2958654 original size:169 final size:170
Alignment explanation
Indices: 2958224--2958706 Score: 596
Period size: 171 Copynumber: 2.8 Consensus size: 170
2958214 TTTGATCTGC
* * * * *
2958224 TTTAACTAGAAATGAAAACAAATTCAGTTCAAAATCATTTATAAAGTTATAAAACCATTTAAAGT
1 TTTAACTAGAAATGAAAAC-AATTCAATTTAAAATCATTTATAAAGTTATAAAACTACTTAAAGC
* *
2958289 GAGTAAC-AGGTCCTTCGAAGGCATGAGTGACTATAAATAGATTTTTCTTGTCAATGGATGGCTT
65 GAGTAACAAGG-CCTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTT
** * * *
2958353 TCGCTTCACATTTCTAGATGCGAACACTGAATTACAATCTGT
129 TCGCTTCATGTTTCTAGATGCGAACACTCAATGACAATATGT
* * * * *
2958395 TTTAGCTAGAAATGAAAGAAAATTTAATTTAAAATCATTTATAATGTCATAAAACTACTTAAAGC
1 TTTAACTAGAAATGAAA-ACAATTCAATTTAAAATCATTTATAAAGTTATAAAACTACTTAAAGC
* * * *
2958460 GAGTAATAAAGCCTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTTAATGGAT-GCTTT
65 GAGTAACAAGGCCTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTT
**
2958524 CGCTTCATGTTTCTCA-ATGCGAACA-TCCAATGATGATATGT
130 CGCTTCATGTTTCT-AGATGCGAACACT-CAATGACAATATGT
* * * * * *
2958565 TTTAACCAAAAATGAAAACAATTCAATTTAAAATGATTTAGAAAGTTATAAAACTACTTAAAACA
1 TTTAACTAGAAATGAAAACAATTCAATTTAAAATCATTTATAAAGTTATAAAACTACTTAAAGCG
* * * *
2958630 AGTGACAAGGCATTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTGAATGGATGGCTCTC
66 AGTAACAAGGCCTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTC
2958695 GCTTCATGTTTC
131 GCTTCATGTTTC
2958707 CTTTCTTGTC
Statistics
Matches: 266, Mismatches: 41, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
169 93 0.35
170 66 0.25
171 104 0.39
172 3 0.01
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (170 bp):
TTTAACTAGAAATGAAAACAATTCAATTTAAAATCATTTATAAAGTTATAAAACTACTTAAAGCG
AGTAACAAGGCCTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTC
GCTTCATGTTTCTAGATGCGAACACTCAATGACAATATGT
Found at i:2958873 original size:206 final size:205
Alignment explanation
Indices: 2958503--2958913 Score: 617
Period size: 206 Copynumber: 2.0 Consensus size: 205
2958493 TAAATGGACT
* ** * * *
2958503 TTTCTTGTTAATGGATGCTTTCGCTTCATGTTTCTCAATGCGAACATCCAATGATGATATGTTTT
1 TTTCTTGTCAATGGATGCTTTCGCTTCACATTTCTCAAAGCGAAAATCCAATGATGATATGTTTG
* *
2958568 AACCAAAAATGAAAACAATTCAATTTAAAATGATTTAGAAAGTTATAAAACTACTTAAAACAAGT
66 AACCAAAAATGAAAAAAATTCAATTTAAAATGATTTAGAAAGTTATAAAACCACTTAAAACAAGT
2958633 GACAAGGCATTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTGAATGGATGGCTCTCGCT
131 GACAAGGCATTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTGAATGGATGGCTCTCGCT
2958698 TCATGTTTCC
196 TCATGTTTCC
* * * *
2958708 TTTCTTGTCAATGGATGGCTTTCGCTTCACATTTCTGAAAGGGAAAATCCCATGATGATCTGTTT
1 TTTCTTGTCAATGGAT-GCTTTCGCTTCACATTTCTCAAAGCGAAAATCCAATGATGATATGTTT
* * **
2958773 GAACCAGAAATGAAATAAAATTCAATTTAAAATGA-TTATAAAGTTATAAAACCACTTAAAATGA
65 GAACCAAAAATGAAA-AAAATTCAATTTAAAATGATTTAGAAAGTTATAAAACCACTTAAAACAA
* * *
2958837 GTGACAAGGCATTCGAAGGCGTGAGTGACTATAAATAGACTTTTCTTGTGAATGGATGGCTCTTG
129 GTGACAAGGCATTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTGAATGGATGGCTCTCG
*
2958902 CTTTATGTTTCC
194 CTTCATGTTTCC
2958914 CTATGTGAAC
Statistics
Matches: 184, Mismatches: 20, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
205 15 0.08
206 151 0.82
207 18 0.10
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.34
Consensus pattern (205 bp):
TTTCTTGTCAATGGATGCTTTCGCTTCACATTTCTCAAAGCGAAAATCCAATGATGATATGTTTG
AACCAAAAATGAAAAAAATTCAATTTAAAATGATTTAGAAAGTTATAAAACCACTTAAAACAAGT
GACAAGGCATTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTGAATGGATGGCTCTCGCT
TCATGTTTCC
Found at i:2959064 original size:171 final size:169
Alignment explanation
Indices: 2958708--2959706 Score: 880
Period size: 171 Copynumber: 5.9 Consensus size: 169
2958698 TCATGTTTCC
* ** *** * * * * * * *
2958708 TTTCTTGTCAATGGATGGCTTTCGCTTCACATTTCTGAAAGGGAAAATCCCATGATGATCTGTTT
1 TTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCCCTATGCGAACATTCAATTATGATATGTTT
* * * * * * **
2958773 GAACCAGAAATGAAATAAAATTCAATTTAAAATGA-TTATAAAGTTATAAAACCACTTAAAATGA
66 -AACTAAAAATGAAA-AAAATTCAGTTTAAAATCATTTATAAAGTTATAAAACTATTTAAAGCGA
* * * *
2958837 GTGACAAGGCATTCGAAGGCGTGAGTGACTATAAATAGACT
129 GTAACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACT
* * * * *
2958878 TTTCTTGTGAATGGATGGCTCTTGCTTTATGTTTCCCTATGTGAACATTCAATTATGATCTGTTT
1 TTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCCCTATGCGAACATTCAATTATGATATGTTT
* * * * *
2958943 AAACTAGAAATGACAAAAAATTCAGTTCAATATCATTTCTAAA-TTCATTAAACTATTTAAAGCG
66 -AACTAAAAATGA-AAAAAATTCAGTTTAAAATCATTTATAAAGTT-ATAAAACTATTTAAAGCG
2959007 AGTAACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACT
128 AGTAACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACT
* * ** * * *
2959049 TCTCTTGTCAATGGATGGATTTTGCTTCACATTT-CTTGATGAGAACATTCAATTATAATATGTT
1 TTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCCCT-ATGCGAACATTCAATTATGATATG-T
* * * * ** *
2959113 TTAACCAAAAATGGAAACAAAGTCAGTTTAAAATCATTTATAAAGTTAAAAAACCGTTTAAAGTG
64 TTAACTAAAAAT-GAAAAAAATTCAGTTTAAAATCATTTATAAAGTTATAAAACTATTTAAAGCG
* * *
2959178 AGTAAC-AGGTCCTTCAAAGGCATTAGTGACTATAAATGGATT
128 AGTAACAAGG-CCTTCGAAGGCATGAGTGACTATAAATGGACT
* ** * *
2959220 TTTCTTATCAATGGATGGCTTTCACTTCACGTTT-CCTAATGCGAACATTCAATTACGATATGTT
1 TTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCCCT-ATGCGAACATTCAATTATGATATG-T
* * * * * * * *
2959284 TTAA-TCAAAATTGTAAAAAATTCAATTTAAAATCATTTGTAAAGTTATAAAACAACTTAAACCA
64 TTAACT-AAAAATGAAAAAAATTCAGTTTAAAATCATTTATAAAGTTATAAAACTATTTAAAGCG
* * *
2959348 AGTAACAAGGCCTTCTAAGGCATTAATGACTATAAATGGACT
128 AGTAACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACT
* * * * * * * * *
2959390 TTTCTTATCAATGAATGACTTTTGCTTCATGTTTCTCAATGCGAACATCCAATGATGATCTATTG
1 TTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCCCTATGCGAACATTCAATTATGATATGTT-
* * * * * * *
2959455 TAACAAAAAATGAAAAATAAATCAATTGAAAATTATTTATAAAGTTATAAAACTACTTAAAACGA
65 TAACTAAAAATGAAAAA-AATTCAGTTTAAAATCATTTATAAAGTTATAAAACTATTTAAAGCGA
* * * * *
2959520 GTGATAAGGCATTTGAAGGCATGAGTGACTATATATGGACT
129 GTAACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACT
* * * * * *
2959561 TTTCTTGTGAATGGATGGCTTTTACTTCATGTTTCCCAAAGTGAACATTCAATTAT-ATTTTGCT
1 TTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCCCTATGCGAACATTCAATTATGA-TATG-T
* * * * *
2959625 TTGACTACAAACGAAAAAAAATTTAGTTTAAAATCATTTATAAAGTTATAAAA-TCATTTAAAGT
64 TTAACTAAAAATG-AAAAAAATTCAGTTTAAAATCATTTATAAAGTTATAAAACT-ATTTAAAGC
2959689 GAGTAACAAGGCCTTCGA
127 GAGTAACAAGGCCTTCGA
2959707 NGAAAGGGAA
Statistics
Matches: 668, Mismatches: 143, Indels: 35
0.79 0.17 0.04
Matches are distributed among these distances:
169 2 0.00
170 221 0.33
171 431 0.65
172 14 0.02
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (169 bp):
TTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCCCTATGCGAACATTCAATTATGATATGTTT
AACTAAAAATGAAAAAAATTCAGTTTAAAATCATTTATAAAGTTATAAAACTATTTAAAGCGAGT
AACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACT
Found at i:2959354 original size:341 final size:339
Alignment explanation
Indices: 2958710--2959615 Score: 984
Period size: 341 Copynumber: 2.7 Consensus size: 339
2958700 ATGTTTCCTT
* * * * * * *
2958710 TCTTGTCAATGGATGGCTTTCGCTTCACATTTC-TGAAAGGGAAAATCCCATGATGATCTGTTTG
1 TCTTGTCAATGGATGGATTTTGCTTCACATTTCTTG-ATGAGAACATCCAATGATGATCTGTTTT
* * *
2958774 AACCAGAAATGAAATAAAATTCAATTTAAAATGA-TTATAAAGTTATAAAACCACTTAAAATGAG
65 AACCAAAAATGAAA-AAAAATCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAATGAG
* * * *
2958838 TGACAAGGCATTCGAAGGCGTGAGTGACTATAAATAGACTTTTCTTGTGAATGGATGGCTCTTGC
129 TAAC-AGGCATTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTGAATGGATGGCT-TTAC
* * *
2958903 TTTATGTTTCCCT-ATGTGAACATTCAATTATGATCTGTTTAAACTAGAAATGACAAAAAATTCA
192 TTCATGTTT-CCTAATGTGAACATTCAATTACGATATGTTTAAACTAGAAATGACAAAAAATTCA
* * * * * * *
2958967 GTTCAATATCATTTCTAAATTCATTAAACTATTTAAAGCGAGTAACAAGGCCTTCGAAGGCATGA
256 ATTCAAAATCATTTCTAAATTCATAAAACAACTTAAACCAAGTAACAAGGCCTTCGAAGGCATGA
*
2959032 GTGACTATAAATGGACTTC
321 ATGACTATAAATGGACTTC
* * * *
2959051 TCTTGTCAATGGATGGATTTTGCTTCACATTTCTTGATGAGAACATTCAATTATAATATGTTTTA
1 TCTTGTCAATGGATGGATTTTGCTTCACATTTCTTGATGAGAACATCCAATGATGATCTGTTTTA
* * * * ** *
2959116 ACCAAAAATGGAAACAAAGTCAGTTTAAAATCATTTATAAAGTTAAAAAACCGTTTAAAGTGAGT
66 ACCAAAAAT-GAAAAAAAATCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAATGAGT
* * * * * *
2959181 AACAGGTCCTTCAAAGGCATTAGTGACTATAAATGGATTTTTCTTATCAATGGATGGCTTTCACT
130 AACAGG-CATTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTGAATGGATGGCTTT-ACT
* * * *
2959246 TCACGTTTCCTAATGCGAACATTCAATTACGATATGTTTTAA-TCA-AAATTG-TAAAAAATTCA
193 TCATGTTTCCTAATGTGAACATTCAATTACGATATGTTTAAACT-AGAAA-TGACAAAAAATTCA
* * * *
2959308 ATTTAAAATCATTTGTAAAGTT-ATAAAACAACTTAAACCAAGTAACAAGGCCTTCTAAGGCATT
256 ATTCAAAATCATTTCTAAA-TTCATAAAACAACTTAAACCAAGTAACAAGGCCTTCGAAGGCATG
*
2959372 AATGACTATAAATGGACTTT
320 AATGACTATAAATGGACTTC
* * ** ** * * *
2959392 TCTTATCAATGAAT-GACTTTTGCTTCATGTTTCTCAATGCGAACATCCAATGATGATCTATTGT
1 TCTTGTCAATGGATGGA-TTTTGCTTCACATTTCTTGATGAGAACATCCAATGATGATCTGTTTT
* * * * *
2959456 AACAAAAAATGAAAAATAAATCAATTGAAAATTATTTATAAAGTTATAAAACTACTTAAAACGAG
65 AACCAAAAATGAAAAA-AAATCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAATGAG
* *
2959521 TGATA-AGGCATTTGAAGGCATGAGTGACTATATATGGACTTTTCTTGTGAATGGATGGCTTTTA
129 T-A-ACAGGCATTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTGAATGGATGGC-TTTA
* *
2959585 CTTCATGTTTCCCAAAGTGAACATTCAATTA
191 CTTCATGTTTCCTAATGTGAACATTCAATTA
2959616 TATTTTGCTT
Statistics
Matches: 464, Mismatches: 87, Indels: 28
0.80 0.15 0.05
Matches are distributed among these distances:
340 7 0.02
341 331 0.71
342 125 0.27
343 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (339 bp):
TCTTGTCAATGGATGGATTTTGCTTCACATTTCTTGATGAGAACATCCAATGATGATCTGTTTTA
ACCAAAAATGAAAAAAAATCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAATGAGTA
ACAGGCATTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTGAATGGATGGCTTTACTTCA
TGTTTCCTAATGTGAACATTCAATTACGATATGTTTAAACTAGAAATGACAAAAAATTCAATTCA
AAATCATTTCTAAATTCATAAAACAACTTAAACCAAGTAACAAGGCCTTCGAAGGCATGAATGAC
TATAAATGGACTTC
Found at i:2960028 original size:171 final size:170
Alignment explanation
Indices: 2959726--2961876 Score: 1785
Period size: 171 Copynumber: 12.6 Consensus size: 170
2959716 AAATCCCATG
* * * * *
2959726 ATGATCTGTTTGAACCAGAAATGAAATAAAATTCAATTTAAAATGA-TTATAAAGTTATAAAACC
1 ATGATATGTTTTAACTAGAAATGAAA-AAAATTCAGTTTAAAATCATTTATAAAGTTATAAAACC
* ** * * * * *
2959790 ACTTAAAATGAGTGACAAGGCATTCGAAGGCGTGAGTGACTATAAATAGACTTTTCTTGTGAATG
65 ATTTAAAGCGAGTAACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATG
* *
2959855 GATGGCTCTT-GCTTTATGTTTCCCTATGTGAACATTCAATT
130 GATGGCT-TTCGCTTCATGTTTCCCTATGCGAACATTCAATT
* * * * * *
2959896 ATGATCTGTTTAAACTAGAAATGACAAAAAATTCAGTTCAATATCATTTCTAAA-TTCATTAAAC
1 ATGATATGTTTTAACTAGAAATGA-AAAAAATTCAGTTTAAAATCATTTATAAAGTT-ATAAAAC
* *
2959960 TATTTAAAGCGAGTAACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTCTCTTGTCAAT
64 CATTTAAAGCGAGTAACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAAT
* * ** * *
2960025 GGATGGATTTTGCTTCACATTT-CTTGATGAGAACATTCAATT
129 GGATGGCTTTCGCTTCATGTTTCCCT-ATGCGAACATTCAATT
* * * * * *
2960067 ATAATATGTTTTAACCAAAAATGGAAACAAAGTCAGTTTAAAATCATTTATAAAGTTAAAAAACC
1 ATGATATGTTTTAACTAGAAAT-GAAAAAAATTCAGTTTAAAATCATTTATAAAGTTATAAAACC
* * * * * *
2960132 GTTTAAAGTGAGTAAC-AGGTCCTTCAAAGGCATTAGTGACTATAAATGGATTTTTCTTATCAAT
65 ATTTAAAGCGAGTAACAAGG-CCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAAT
* *
2960196 GGATGGCTTTCACTTCACGTTT-CCTAATGCGAACATTCAATT
129 GGATGGCTTTCGCTTCATGTTTCCCT-ATGCGAACATTCAATT
* * * *
2960238 ACGATATGTTTTAA-TCA-AAATTGTAAAAAATTCAATTTAAAATCATTTGTAAAGTTATAAAAC
1 ATGATATGTTTTAACT-AGAAA-TGAAAAAAATTCAGTTTAAAATCATTTATAAAGTTATAAAAC
* * * * * * * *
2960301 AACTTAAACCAAGTAACAAGGCCTTCTAAGGCATTAATGACTATAAATGGACTTTTCTTATCAAT
64 CATTTAAAGCGAGTAACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAAT
* * * * * * *
2960366 GAATGACTTTTGCTTCATGTTTCTCAATGCGAACATCCAATG
129 GGATGGCTTTCGCTTCATGTTTCCCTATGCGAACATTCAATT
* * * * * * * * * *
2960408 ATGATCTATTGTAACAAAAAATGAAAAATAAATCAATTGAAAATTATTTATAAAGTTATAAAACT
1 ATGATATGTTTTAACTAGAAATGAAAAA-AATTCAGTTTAAAATCATTTATAAAGTTATAAAACC
* * * * * * * *
2960473 ACTTAAAACGAGTGATAAGGCATTTGAAGGCATGAGTGACTATATATGGACTTTTCTTGTGAATG
65 ATTTAAAGCGAGTAACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATG
** * * *
2960538 GATGGCTTTTACTTCATGTTTCCCAAAGTGAACATTCAATT
130 GATGGCTTTCGCTTCATGTTTCCCTATGCGAACATTCAATT
* * * * * * *
2960579 AT-ATTTTGCTTTGACTACAAACGAAAAAAAATTTAGTTTAAAATCATTTATAAAGTTATAAAAT
1 ATGA-TATGTTTTAACTAGAAATG-AAAAAAATTCAGTTTAAAATCATTTATAAAGTTATAAAAC
* * * *
2960643 CATTTAAAGTGAGTAACAAGGCCTTCGAAGGTATGGGTGACTATAAATGGACTTCTCTTAG-CAA
64 CATTTAAAGCGAGTAACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTT-GTCAA
* *
2960707 TGGATGG-TTTACGCTTCATGTTT-CTTGATGTGAACATTCAATT
128 TGGATGGCTTT-CGCTTCATGTTTCCCT-ATGCGAACATTCAATT
* * * * * * * * *
2960750 ATGGTCTGTTTTAACCAGCAATGTAAGACATTTCAATTTAAAATCATTTATAAAGTTGTAAAACC
1 ATGATATGTTTTAACTAGAAATG-AAAAAAATTCAGTTTAAAATCATTTATAAAGTTATAAAACC
* * * * * * * * * *
2960815 ACTTAAAGAGAATAATAAGGCATTCAAAGGCATGAATGGCTATAAATGCACTTTTCTTGCCAATG
65 ATTTAAAGCGAGTAACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATG
* * * ** *
2960880 GATGGCTTTCACTTCACGTTT-CTTGAAACGAACATTTAATT
130 GATGGCTTTCGCTTCATGTTTCCCT-ATGCGAACATTCAATT
* * * * * *
2960921 ATGATATGCTTTAACCAGAAA-CAAAAAAATTTAGTTCAAAATCATTTCTAAAGTTATAAAACCA
1 ATGATATGTTTTAACTAGAAATGAAAAAAATTCAGTTTAAAATCATTTATAAAGTTATAAAACCA
* * ** * *
2960985 TTTAAAGCGAGTAACGAGGCCATCGAACACATGAATGACTATAAATGGACTTTTCTTGTCAATAG
66 TTTAAAGCGAGTAACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGG
* * *
2961050 ATGGCTTTCGCTTCATGTTTCCTTGTGCAAACATTCAATT
131 ATGGCTTTCGCTTCATGTTTCCCTATGCGAACATTCAATT
* * * *
2961090 ATGATATGTTTTAATTATAAACGAAAAAAATTCAGTTTAAAATCATTTATAAAGTTATAAAACTA
1 ATGATATGTTTTAACTAGAAATGAAAAAAATTCAGTTTAAAATCATTTATAAAGTTATAAAACCA
* * * * *
2961155 TTTAAAGTGTGTAATAAGGCATTCGAAGGCATGAGTTG-CTATAAATGGACTTTTCTTATCAATG
66 TTTAAAGCGAGTAACAAGGCCTTCGAAGGCATGAG-TGACTATAAATGGACTTTTCTTGTCAATG
* * * * * * *
2961219 GATGGCTTTAGCTTTACGTTTCCCAATGTGAACATTCTATA
130 GATGGCTTTCGCTTCATGTTTCCCTATGCGAACATTCAATT
* * * * **
2961260 ATGATATGTTTTAACTAG-AATTATAAAAAATTCAATTTAAAATTATTTCTAAAGTTATAAAAAA
1 ATGATATGTTTTAACTAGAAATGA-AAAAAATTCAGTTTAAAATCATTTATAAAGTTATAAAACC
* * ** * * * * *
2961324 AATTAAAGCGAGAAATTAGGCTTTCGTAGGCATGACTGACTATATATGGACTTTTGTTGTCAATG
65 ATTTAAAGCGAGTAACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATG
* ** ** * * * *
2961389 GATGGCTTTTGAATCACATTTCTCAAGGCAAACA-TCAATT
130 GATGGCTTTCGCTTCATGTTTCCCTATGCGAACATTCAATT
* * * *
2961429 ATGATCTGTTTTAA-TCATAAATGAAAAAACATTCAATTTTAAATCATTTTATAAAGTTATAAAA
1 ATGATATGTTTTAACT-AGAAATGAAAAAA-ATTCAGTTTAAAATCA-TTTATAAAGTTATAAAA
* ** * * * * * * * * *
2961493 CCACTTAAAATGAGTGACAAAGCATTTGAAGGCATGAGTGACTACAAATAGATTTTTTTTCTCAA
63 CCATTTAAAGCGAGTAACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* *
2961558 TGGGTGGCTTTCGCTACTCA--TTTCCCTATGC-ATACATCCAATT
128 TGGATGGCTTTCGCT--TCATGTTTCCCTATGCGA-ACATTCAATT
* * * ** * *
2961601 ATGATGT-TTTATAACAAAACAATGAAAAAATATTTTGATTTAAAATAATTTAT-AAGACTATAA
1 ATGATATGTTT-TAACTAGA-AATGAAAAAA-ATTCAG-TTTAAAATCATTTATAAAG-TTATAA
* * * * * *
2961664 AACCATTTGAAGCGAGTAACTAGGCTTTCGAAGGTATAAGCGACTATAAATGGACTTTTCTTGTC
61 AACCATTTAAAGCGAGTAACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTC
* ** * * * * *
2961729 AATGAATGGCTTTTTCTTCGTGTTTCTCGATGCAAACATTGAATT
126 AATGGATGGCTTTCGCTTCATGTTTCCCTATGCGAACATTCAATT
* * * * * * * * *
2961774 ATTATCTGTTTCAGCTAGAAATGAATGAAAATTCAATTTAAAATAATTTATAAAGTTATAAAGCA
1 ATGATATGTTTTAACTAGAAATGAA-AAAAATTCAGTTTAAAATCATTTATAAAGTTATAAAACC
* *
2961839 ATTTAAAGTGAGCAACAAGG-CTTACGAAGGCATGAGTG
65 ATTTAAAGCGAGTAACAAGGCCTT-CGAAGGCATGAGTG
2961877 TTGGTCCCGT
Statistics
Matches: 1572, Mismatches: 361, Indels: 95
0.78 0.18 0.05
Matches are distributed among these distances:
168 1 0.00
169 159 0.10
170 460 0.29
171 780 0.50
172 44 0.03
173 116 0.07
174 12 0.01
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (170 bp):
ATGATATGTTTTAACTAGAAATGAAAAAAATTCAGTTTAAAATCATTTATAAAGTTATAAAACCA
TTTAAAGCGAGTAACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGG
ATGGCTTTCGCTTCATGTTTCCCTATGCGAACATTCAATT
Found at i:2960610 original size:964 final size:963
Alignment explanation
Indices: 2958744--2960670 Score: 3845
Period size: 964 Copynumber: 2.0 Consensus size: 963
2958734 TCACATTTCT
2958744 GAAAGGGAAAATCCCATGATGATCTGTTTGAACCAGAAATGAAATAAAATTCAATTTAAAATGAT
1 GAAAGGGAAAATCCCATGATGATCTGTTTGAACCAGAAATGAAATAAAATTCAATTTAAAATGAT
2958809 TATAAAGTTATAAAACCACTTAAAATGAGTGACAAGGCATTCGAAGGCGTGAGTGACTATAAATA
66 TATAAAGTTATAAAACCACTTAAAATGAGTGACAAGGCATTCGAAGGCGTGAGTGACTATAAATA
2958874 GACTTTTCTTGTGAATGGATGGCTCTTGCTTTATGTTTCCCTATGTGAACATTCAATTATGATCT
131 GACTTTTCTTGTGAATGGATGGCTCTTGCTTTATGTTTCCCTATGTGAACATTCAATTATGATCT
2958939 GTTTAAACTAGAAATGACAAAAAATTCAGTTCAATATCATTTCTAAATTCATTAAACTATTTAAA
196 GTTTAAACTAGAAATGACAAAAAATTCAGTTCAATATCATTTCTAAATTCATTAAACTATTTAAA
2959004 GCGAGTAACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTCTCTTGTCAATGGATGGAT
261 GCGAGTAACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTCTCTTGTCAATGGATGGAT
2959069 TTTGCTTCACATTTCTTGATGAGAACATTCAATTATAATATGTTTTAACCAAAAATGGAAACAAA
326 TTTGCTTCACATTTCTTGATGAGAACATTCAATTATAATATGTTTTAACCAAAAATGGAAACAAA
2959134 GTCAGTTTAAAATCATTTATAAAGTTAAAAAACCGTTTAAAGTGAGTAACAGGTCCTTCAAAGGC
391 GTCAGTTTAAAATCATTTATAAAGTTAAAAAACCGTTTAAAGTGAGTAACAGGTCCTTCAAAGGC
2959199 ATTAGTGACTATAAATGGATTTTTCTTATCAATGGATGGCTTTCACTTCACGTTTCCTAATGCGA
456 ATTAGTGACTATAAATGGATTTTTCTTATCAATGGATGGCTTTCACTTCACGTTTCCTAATGCGA
2959264 ACATTCAATTACGATATGTTTTAATCAAAATTGTAAAAAATTCAATTTAAAATCATTTGTAAAGT
521 ACATTCAATTACGATATGTTTTAATCAAAATTGTAAAAAATTCAATTTAAAATCATTTGTAAAGT
2959329 TATAAAACAACTTAAACCAAGTAACAAGGCCTTCTAAGGCATTAATGACTATAAATGGACTTTTC
586 TATAAAACAACTTAAACCAAGTAACAAGGCCTTCTAAGGCATTAATGACTATAAATGGACTTTTC
2959394 TTATCAATGAATGACTTTTGCTTCATGTTTCTCAATGCGAACATCCAATGATGATCTATTGTAAC
651 TTATCAATGAATGACTTTTGCTTCATGTTTCTCAATGCGAACATCCAATGATGATCTATTGTAAC
2959459 AAAAAATGAAAAATAAATCAATTGAAAATTATTTATAAAGTTATAAAACTACTTAAAACGAGTGA
716 AAAAAATGAAAAATAAATCAATTGAAAATTATTTATAAAGTTATAAAACTACTTAAAACGAGTGA
2959524 TAAGGCATTTGAAGGCATGAGTGACTATATATGGACTTTTCTTGTGAATGGATGGCTTTTACTTC
781 TAAGGCATTTGAAGGCATGAGTGACTATATATGGACTTTTCTTGTGAATGGATGGCTTTTACTTC
2959589 ATGTTTCCCAAAGTGAACATTCAATTATATTTTGCTTTGACTACAAACGAAAAAAAATTTAGTTT
846 ATGTTTCCCAAAGTGAACATTCAATTATATTTTGCTTTGACTACAAACGAAAAAAAATTTAGTTT
2959654 AAAATCATTTATAAAGTTATAAAATCATTTAAAGTGAGTAACAAGGCCTTCGA
911 AAAATCATTTATAAAGTTATAAAATCATTTAAAGTGAGTAACAAGGCCTTCGA
2959707 NGAAAGGGAAAATCCCATGATGATCTGTTTGAACCAGAAATGAAATAAAATTCAATTTAAAATGA
1 -GAAAGGGAAAATCCCATGATGATCTGTTTGAACCAGAAATGAAATAAAATTCAATTTAAAATGA
2959772 TTATAAAGTTATAAAACCACTTAAAATGAGTGACAAGGCATTCGAAGGCGTGAGTGACTATAAAT
65 TTATAAAGTTATAAAACCACTTAAAATGAGTGACAAGGCATTCGAAGGCGTGAGTGACTATAAAT
2959837 AGACTTTTCTTGTGAATGGATGGCTCTTGCTTTATGTTTCCCTATGTGAACATTCAATTATGATC
130 AGACTTTTCTTGTGAATGGATGGCTCTTGCTTTATGTTTCCCTATGTGAACATTCAATTATGATC
2959902 TGTTTAAACTAGAAATGACAAAAAATTCAGTTCAATATCATTTCTAAATTCATTAAACTATTTAA
195 TGTTTAAACTAGAAATGACAAAAAATTCAGTTCAATATCATTTCTAAATTCATTAAACTATTTAA
2959967 AGCGAGTAACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTCTCTTGTCAATGGATGGA
260 AGCGAGTAACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTCTCTTGTCAATGGATGGA
2960032 TTTTGCTTCACATTTCTTGATGAGAACATTCAATTATAATATGTTTTAACCAAAAATGGAAACAA
325 TTTTGCTTCACATTTCTTGATGAGAACATTCAATTATAATATGTTTTAACCAAAAATGGAAACAA
2960097 AGTCAGTTTAAAATCATTTATAAAGTTAAAAAACCGTTTAAAGTGAGTAACAGGTCCTTCAAAGG
390 AGTCAGTTTAAAATCATTTATAAAGTTAAAAAACCGTTTAAAGTGAGTAACAGGTCCTTCAAAGG
2960162 CATTAGTGACTATAAATGGATTTTTCTTATCAATGGATGGCTTTCACTTCACGTTTCCTAATGCG
455 CATTAGTGACTATAAATGGATTTTTCTTATCAATGGATGGCTTTCACTTCACGTTTCCTAATGCG
2960227 AACATTCAATTACGATATGTTTTAATCAAAATTGTAAAAAATTCAATTTAAAATCATTTGTAAAG
520 AACATTCAATTACGATATGTTTTAATCAAAATTGTAAAAAATTCAATTTAAAATCATTTGTAAAG
2960292 TTATAAAACAACTTAAACCAAGTAACAAGGCCTTCTAAGGCATTAATGACTATAAATGGACTTTT
585 TTATAAAACAACTTAAACCAAGTAACAAGGCCTTCTAAGGCATTAATGACTATAAATGGACTTTT
2960357 CTTATCAATGAATGACTTTTGCTTCATGTTTCTCAATGCGAACATCCAATGATGATCTATTGTAA
650 CTTATCAATGAATGACTTTTGCTTCATGTTTCTCAATGCGAACATCCAATGATGATCTATTGTAA
2960422 CAAAAAATGAAAAATAAATCAATTGAAAATTATTTATAAAGTTATAAAACTACTTAAAACGAGTG
715 CAAAAAATGAAAAATAAATCAATTGAAAATTATTTATAAAGTTATAAAACTACTTAAAACGAGTG
2960487 ATAAGGCATTTGAAGGCATGAGTGACTATATATGGACTTTTCTTGTGAATGGATGGCTTTTACTT
780 ATAAGGCATTTGAAGGCATGAGTGACTATATATGGACTTTTCTTGTGAATGGATGGCTTTTACTT
2960552 CATGTTTCCCAAAGTGAACATTCAATTATATTTTGCTTTGACTACAAACGAAAAAAAATTTAGTT
845 CATGTTTCCCAAAGTGAACATTCAATTATATTTTGCTTTGACTACAAACGAAAAAAAATTTAGTT
2960617 TAAAATCATTTATAAAGTTATAAAATCATTTAAAGTGAGTAACAAGGCCTTCGA
910 TAAAATCATTTATAAAGTTATAAAATCATTTAAAGTGAGTAACAAGGCCTTCGA
2960671 AGGTATGGGT
Statistics
Matches: 963, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
964 963 1.00
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33
Consensus pattern (963 bp):
GAAAGGGAAAATCCCATGATGATCTGTTTGAACCAGAAATGAAATAAAATTCAATTTAAAATGAT
TATAAAGTTATAAAACCACTTAAAATGAGTGACAAGGCATTCGAAGGCGTGAGTGACTATAAATA
GACTTTTCTTGTGAATGGATGGCTCTTGCTTTATGTTTCCCTATGTGAACATTCAATTATGATCT
GTTTAAACTAGAAATGACAAAAAATTCAGTTCAATATCATTTCTAAATTCATTAAACTATTTAAA
GCGAGTAACAAGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTCTCTTGTCAATGGATGGAT
TTTGCTTCACATTTCTTGATGAGAACATTCAATTATAATATGTTTTAACCAAAAATGGAAACAAA
GTCAGTTTAAAATCATTTATAAAGTTAAAAAACCGTTTAAAGTGAGTAACAGGTCCTTCAAAGGC
ATTAGTGACTATAAATGGATTTTTCTTATCAATGGATGGCTTTCACTTCACGTTTCCTAATGCGA
ACATTCAATTACGATATGTTTTAATCAAAATTGTAAAAAATTCAATTTAAAATCATTTGTAAAGT
TATAAAACAACTTAAACCAAGTAACAAGGCCTTCTAAGGCATTAATGACTATAAATGGACTTTTC
TTATCAATGAATGACTTTTGCTTCATGTTTCTCAATGCGAACATCCAATGATGATCTATTGTAAC
AAAAAATGAAAAATAAATCAATTGAAAATTATTTATAAAGTTATAAAACTACTTAAAACGAGTGA
TAAGGCATTTGAAGGCATGAGTGACTATATATGGACTTTTCTTGTGAATGGATGGCTTTTACTTC
ATGTTTCCCAAAGTGAACATTCAATTATATTTTGCTTTGACTACAAACGAAAAAAAATTTAGTTT
AAAATCATTTATAAAGTTATAAAATCATTTAAAGTGAGTAACAAGGCCTTCGA
Found at i:2960725 original size:342 final size:339
Alignment explanation
Indices: 2959726--2961876 Score: 1918
Period size: 341 Copynumber: 6.3 Consensus size: 339
2959716 AAATCCCATG
* * *
2959726 ATGATCTGTTTGAACCAGAAATGAAATAAAATTCAATTTAAAATGA-TTATAAAGTTATAAAACC
1 ATGATCTGTTTTAACCAAAAATGAAA-AAAATTCAATTTAAAATCATTTATAAAGTTATAAAACC
* * * *
2959790 ACTTAAAATGAGTGACAAGGCATTCGAAGGCGTGAGTGACTATAAATAGACTTTTCTTGTGAATG
65 ACTTAAAATGAGTGATAAGGCATTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATG
* * * * * * *
2959855 GATGGCTCTTGCTTTATGTTTCCCTATGTGAACATTCAATTATGATCTGTTTAAACTAGAAATGA
130 GATGGCTTTTACTTCACGTTTCCCAATGTGAACATTCAATTATGATATGTTT-AACTACAAATGA
* * * *
2959920 CAAAAAATTCAGTTCAATATCATTTCTAAA-TTCATTAAACTATTTAAAGCGAGTAACAAGGCCT
194 AAAAAAATTCAGTTTAAAATCATTTCTAAAGTT-ATAAAAC-ATTTAAAGCGAGTAACAAGGCCT
* * * **
2959984 TCGAAGGCATGAGTGACTATAAATGGACTTCTCTTGTCAATGGATGGATTTTGCTTCACATTTCT
257 TCGAAGGCATGAATGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCT
** *
2960049 TGATGAGAACATTCAATT
322 CAATGCGAACATTCAATT
* * * * * *
2960067 ATAATATGTTTTAACCAAAAATGGAAACAAAGTCAGTTTAAAATCATTTATAAAGTTAAAAAACC
1 ATGATCTGTTTTAACCAAAAAT-GAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACC
** * * * * * *
2960132 GTTTAAAGTGAGT-A-ACAGGTCCTTCAAAGGCATTAGTGACTATAAATGGATTTTTCTTATCAA
65 ACTTAAAATGAGTGATA-AGG-CATTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* * * *
2960195 TGGATGGCTTTCACTTCACGTTTCCTAATGCGAACATTCAATTACGATATGTTTTAA-T-CAAAA
128 TGGATGGCTTTTACTTCACGTTTCCCAATGTGAACATTCAATTATGATATG-TTTAACTAC-AAA
* * * * * *
2960258 TTG-TAAAAAATTCAATTTAAAATCATTTGTAAAGTTATAAAACAACTTAAACCAAGTAACAAGG
191 -TGAAAAAAAATTCAGTTTAAAATCATTTCTAAAGTTATAAAAC-ATTTAAAGCGAGTAACAAGG
* * * * *
2960322 CCTTCTAAGGCATTAATGACTATAAATGGACTTTTCTTATCAATGAATGACTTTTGCTTCATGTT
254 CCTTCGAAGGCATGAATGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTT
* *
2960387 TCTCAATGCGAACATCCAATG
319 TCTCAATGCGAACATTCAATT
* * * * * * *
2960408 ATGATCTATTGTAACAAAAAATGAAAAATAAATCAATTGAAAATTATTTATAAAGTTATAAAACT
1 ATGATCTGTTTTAACCAAAAATGAAAAA-AATTCAATTTAAAATCATTTATAAAGTTATAAAACC
* * * *
2960473 ACTTAAAACGAGTGATAAGGCATTTGAAGGCATGAGTGACTATATATGGACTTTTCTTGTGAATG
65 ACTTAAAATGAGTGATAAGGCATTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATG
* * * * *
2960538 GATGGCTTTTACTTCATGTTTCCCAAAGTGAACATTCAATTAT-ATTTTGCTTTGACTACAAACG
130 GATGGCTTTTACTTCACGTTTCCCAATGTGAACATTCAATTATGA-TATG-TTTAACTACAAATG
* * *
2960602 AAAAAAAATTTAGTTTAAAATCATTTATAAAGTTATAAAATCATTTAAAGTGAGTAACAAGGCCT
193 AAAAAAAATTCAGTTTAAAATCATTTCTAAAGTTATAAAA-CATTTAAAGCGAGTAACAAGGCCT
* ** * *
2960667 TCGAAGGTATGGGTGACTATAAATGGACTTCTCTTAG-CAATGGATGG-TTTACGCTTCATGTTT
257 TCGAAGGCATGAATGACTATAAATGGACTTTTCTT-GTCAATGGATGGCTTT-TGCTTCATGTTT
** *
2960730 CTTGATGTGAACATTCAATT
320 CTCAATGCGAACATTCAATT
* ** * * * *
2960750 ATGGTCTGTTTTAACCAGCAATGTAAGACATTTCAATTTAAAATCATTTATAAAGTTGTAAAACC
1 ATGATCTGTTTTAACCAAAAATG-AAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACC
* * * * * * *
2960815 ACTTAAAGA-GAATAATAAGGCATTCAAAGGCATGAATGGCTATAAATGCACTTTTCTTGCCAAT
65 ACTTAAA-ATGAGTGATAAGGCATTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAAT
* ** ** * * *
2960879 GGATGGCTTTCACTTCACGTTTCTTGAA-ACGAACATTTAATTATGATATGCTTTAACCAGAAA-
129 GGATGGCTTTTACTTCACGTTTC-CCAATGTGAACATTCAATTATGATATG-TTTAACTACAAAT
* * * *
2960942 -CAAAAAAATTTAGTTCAAAATCATTTCTAAAGTTATAAAACCATTTAAAGCGAGTAACGAGGCC
192 GAAAAAAAATTCAGTTTAAAATCATTTCTAAAGTTATAAAA-CATTTAAAGCGAGTAACAAGGCC
* ** * *
2961006 ATCGAACACATGAATGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTTCGCTTCATGTTTC
256 TTCGAAGGCATGAATGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTC
** *
2961071 -CTTGTGCAAACATTCAATT
321 TC-AATGCGAACATTCAATT
* ** * * * *
2961090 ATGATATGTTTTAATTATAAACGAAAAAAATTCAGTTTAAAATCATTTATAAAGTTATAAAACTA
1 ATGATCTGTTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCA
* * * * *
2961155 TTTAAAGTGTGTAATAAGGCATTCGAAGGCATGAGTTG-CTATAAATGGACTTTTCTTATCAATG
66 CTTAAAATGAGTGATAAGGCATTCGAAGGCATGAG-TGACTATAAATGGACTTTTCTTGTCAATG
* * * * *
2961219 GATGGC-TTTAGCTTTACGTTTCCCAATGTGAACATTCTATAATGATATGTTTTAACTA-GAATT
130 GATGGCTTTTA-CTTCACGTTTCCCAATGTGAACATTCAATTATGATATG-TTTAACTACAAATG
* * * * * * ** *
2961282 ATAAAAAATTCAATTTAAAATTATTTCTAAAGTTATAAAAAAAATTAAAGCGAGAAATTAGGCTT
193 AAAAAAAATTCAGTTTAAAATCATTTCTAAAGTTAT-AAAACATTTAAAGCGAGTAACAAGGCCT
* * * * ** **
2961347 TCGTAGGCATGACTGACTATATATGGACTTTTGTTGTCAATGGATGGCTTTTGAATCACATTTCT
257 TCGAAGGCATGAATGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCT
* *
2961412 CAAGGCAAACA-TCAATT
322 CAATGCGAACATTCAATT
* * *
2961429 ATGATCTGTTTTAATCATAAATGAAAAAACATTCAATTTTAAATCATTTTATAAAGTTATAAAAC
1 ATGATCTGTTTTAACCAAAAATGAAAAAA-ATTCAATTTAAAATCA-TTTATAAAGTTATAAAAC
* * * * * * * *
2961494 CACTTAAAATGAGTGACAAAGCATTTGAAGGCATGAGTGACTACAAATAGATTTTTTTTCTCAAT
64 CACTTAAAATGAGTGATAAGGCATTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAAT
* ** * * * * * * * * * *
2961559 GGGTGGCTTTCGCTACTCATTTCCCTATG-CATACATCCAATTATGATGTTTTATAACAAAACAA
129 GGATGGCTTTTACTTCACGTTTCCCAATGTGA-ACATTCAATTATGATATGTT-TAACTACA-AA
* ** * * * * *
2961623 TGAAAAAATATTTTGATTTAAAATAATTTAT-AAGACTATAAAACCATTTGAAGCGAGTAACTAG
191 TGAAAAAAAATTCAG-TTTAAAATCATTTCTAAAG-TTATAAAA-CATTTAAAGCGAGTAACAAG
* * * * * *
2961687 GCTTTCGAAGGTAT-AAGCGACTATAAATGGACTTTTCTTGTCAATGAATGGCTTTTTCTTCGTG
253 GCCTTCGAAGGCATGAA-TGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATG
* * *
2961751 TTTCTCGATGCAAACATTGAATT
317 TTTCTCAATGCGAACATTCAATT
* * * * * * * * *
2961774 ATTATCTGTTTCAGCTAGAAATGAATGAAAATTCAATTTAAAATAATTTATAAAGTTATAAAGCA
1 ATGATCTGTTTTAACCAAAAATGAA-AAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACC
* * ** *
2961839 ATTTAAAGTGAGCAACAAGGC-TTACGAAGGCATGAGTG
65 ACTTAAAATGAGTGATAAGGCATT-CGAAGGCATGAGTG
2961877 TTGGTCCCGT
Statistics
Matches: 1452, Mismatches: 310, Indels: 93
0.78 0.17 0.05
Matches are distributed among these distances:
338 7 0.00
339 160 0.11
340 272 0.19
341 412 0.28
342 386 0.27
343 34 0.02
344 140 0.10
345 38 0.03
346 3 0.00
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (339 bp):
ATGATCTGTTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCA
CTTAAAATGAGTGATAAGGCATTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGG
ATGGCTTTTACTTCACGTTTCCCAATGTGAACATTCAATTATGATATGTTTAACTACAAATGAAA
AAAAATTCAGTTTAAAATCATTTCTAAAGTTATAAAACATTTAAAGCGAGTAACAAGGCCTTCGA
AGGCATGAATGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTCAAT
GCGAACATTCAATT
Found at i:2963781 original size:18 final size:19
Alignment explanation
Indices: 2963758--2963793 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
2963748 GTGAGAAGAA
*
2963758 TATTTTA-AGATAAAATAT
1 TATTTTATAAATAAAATAT
2963776 TATTTTATAAATAAAATA
1 TATTTTATAAATAAAATA
2963794 AATAAACAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (19 bp):
TATTTTATAAATAAAATAT
Found at i:2964377 original size:35 final size:35
Alignment explanation
Indices: 2964338--2964446 Score: 96
Period size: 35 Copynumber: 3.1 Consensus size: 35
2964328 GTTTGTGAGG
2964338 GAGAAAAGAGGAGTTGTTGCTGCTAGTTTGAAAGA
1 GAGAAAAGAGGAGTTGTTGCTGCTAGTTTGAAAGA
* * ** *
2964373 GAGAAATGAGG-GATT-TTGCTGCCGAGTTTGTGAGG
1 GAGAAAAGAGGAG-TTGTTGCTG-CTAGTTTGAAAGA
* * *
2964408 GAGAAACGAAGAGTTGTTGTTGCTAGTTTTAGAAAGA
1 GAGAAAAGAGGAGTTGTTGCTGCTAG-TTT-GAAAGA
2964445 GA
1 GA
2964447 AATGAGGGGT
Statistics
Matches: 56, Mismatches: 12, Indels: 10
0.72 0.15 0.13
Matches are distributed among these distances:
34 7 0.12
35 35 0.62
36 9 0.16
37 5 0.09
ACGTcount: A:0.31, C:0.06, G:0.35, T:0.28
Consensus pattern (35 bp):
GAGAAAAGAGGAGTTGTTGCTGCTAGTTTGAAAGA
Found at i:2964475 original size:70 final size:70
Alignment explanation
Indices: 2964325--2964506 Score: 210
Period size: 70 Copynumber: 2.6 Consensus size: 70
2964315 CTGGTGCTAT
* * *
2964325 CGGGTTTGTGAGGGAGAAAAGAGGAGTTGTTGCTGCTAGTTTGAAAGAGAGAAATGAGGGATTTT
1 CGGGTTTGTGAGGGAGAAAAGAAGAGTTGTTGTTGCTAGTTTTAAAGAGAGAAATGAGGGATTTT
2964390 GCTGC
66 GCTGC
* * *
2964395 CGAGTTTGTGAGGGAGAAACGAAGAGTTGTTGTTGCTAGTTTTAGAA-AGAGAAATGAGGGGTTT
1 CGGGTTTGTGAGGGAGAAAAGAAGAGTTGTTGTTGCTAGTTTTA-AAGAGAGAAATGAGGGATTT
* *
2964459 TGTTGT
65 TGCTGC
* * *
2964465 TGGGTATGTGAGGGA-AAAAGGAA-AGGTTG-TGTTGCCAGTTTT
1 CGGGTTTGTGAGGGAGAAAA-GAAGA-GTTGTTGTTGCTAGTTTT
2964507 GAGAGTAAAG
Statistics
Matches: 96, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
69 16 0.17
70 78 0.81
71 2 0.02
ACGTcount: A:0.27, C:0.05, G:0.37, T:0.30
Consensus pattern (70 bp):
CGGGTTTGTGAGGGAGAAAAGAAGAGTTGTTGTTGCTAGTTTTAAAGAGAGAAATGAGGGATTTT
GCTGC
Found at i:2964605 original size:2 final size:2
Alignment explanation
Indices: 2964600--2964671 Score: 103
Period size: 2 Copynumber: 37.0 Consensus size: 2
2964590 GGTAGAAAAA
* * *
2964600 AT AT AT AT AT AT AC AT AT AT AT AT A- AT AA AT AA AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2964640 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2964672 CAAGTAGGTT
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
1 2 0.03
2 60 0.97
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:2966562 original size:26 final size:26
Alignment explanation
Indices: 2966526--2966584 Score: 109
Period size: 26 Copynumber: 2.3 Consensus size: 26
2966516 TTGGTTTCTG
*
2966526 CTCCCCTGGTTCCTGGTACCATACTT
1 CTCCCCCGGTTCCTGGTACCATACTT
2966552 CTCCCCCGGTTCCTGGTACCATACTT
1 CTCCCCCGGTTCCTGGTACCATACTT
2966578 CTCCCCC
1 CTCCCCC
2966585 TTTTTGTCAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.10, C:0.46, G:0.14, T:0.31
Consensus pattern (26 bp):
CTCCCCCGGTTCCTGGTACCATACTT
Found at i:2978280 original size:171 final size:171
Alignment explanation
Indices: 2977747--2978651 Score: 881
Period size: 171 Copynumber: 5.3 Consensus size: 171
2977737 GGAGCCAACA
* * * ** ***
2977747 ATGAGTGACTATAAATGGACTTCTCTTGTCAATTGATGGCTTTCACTTCACATTTCTTGATGCGA
1 ATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCAAATGCGA
* * * *
2977812 ACGTTCAACTATGATCTGTTTTAACCAAAAATAAAAAACAAATTTAG-TTCAAAATCATTTATAA
66 ACATTCAATTATGATCTGTTTTAACCAAAAATGAAAAA-AAATTCAGATT-AAAATCATTTATAA
2977876 AGTTATAAAACCATTTAAAGCGAGTAACAAGGCCTTCGAAGGC
129 AGTTATAAAACCATTTAAAGCGAGTAACAAGGCCTTCGAAGGC
* * * * * *
2977919 ATAAATGACTATAACTGGACTTTTCTTATGAATGGGTGGCTTTCGCTTCATGTTTCTC-AATGCG
1 ATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTC-CAAATGCG
* * * * * * *
2977983 AATATTCAATTATTATCTTTTTTAACCAGAAA-CAAAAAAAA---AGTTTAAAATCATTAATAAA
65 AACATTCAATTATGATCTGTTTTAACCAAAAATGAAAAAAAATTCAGATTAAAATCATTTATAAA
* * * *
2978044 GTTAAAAAACCATTTAAAGCGAGTAATAAGGCCTTCAAAGGA
130 GTTATAAAACCATTTAAAGCGAGTAACAAGGCCTTCGAAGGC
* * * * * * * * *
2978086 ATGATTGTCGATGAATAGACTTTTCTCGTCAATGGATGGGGTTT-GCTTCATGTCTCCAAATGTG
1 ATGAGTGACTATAAATGGACTTTTCTTGTCAATGGAT-GGCTTTCGCTTCATGTTTCCAAATGCG
* * *
2978150 AACATTCAATTATGATCAGTTTTAACCAAAAAGGAAAAAAAATTCAGATCAAAATCATTTATAAA
65 AACATTCAATTATGATCTGTTTTAACCAAAAATGAAAAAAAATTCAGATTAAAATCATTTATAAA
* * *
2978215 GTTATAAAAGCATTTAAAGCAAGTAACAAGGCCTTCGAAGTC
130 GTTATAAAACCATTTAAAGCGAGTAACAAGGCCTTCGAAGGC
* * *
2978257 ATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTGGCTTCATGTTTCCTAATGCGA
1 ATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCAAATGCGA
* *
2978322 ACATTTAGTTATGATCTGTTTTAACC-AAAATG--AAAAAATGTCA-ATTTAAAATCATTTATAA
66 ACATTCAATTATGATCTGTTTTAACCAAAAATGAAAAAAAAT-TCAGA-TTAAAATCATTTATAA
* *
2978383 GAG-TA-AAAACCCATTTAAAGC-ATGTAACTA-GCCTGTTGAAGGC
129 -AGTTATAAAA-CCATTTAAAGCGA-GTAACAAGGCCT-TCGAAGGC
** ** * * * * *
2978426 ATGAACGACTATAAATAAACTTTTTTTGTCAATGGATGGTTTTCACTTCATGATTCCAGATGCGA
1 ATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCAAATGCGA
* * * * * * *
2978491 ACATTGAATTATTATATGTTTTAGCTAGAAATGAAAGAAAATTCA-ATTTAAAATCATTTATAAA
66 ACATTCAATTATGATCTGTTTTAACCAAAAATGAAAAAAAATTCAGA-TTAAAATCATTTATAAA
* * * *
2978555 GTTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGAAGGT
130 GTTATAAAACCATTTAAAGCGAGTAACAAGGCCTTCGAAGGC
** * * * * * *
2978597 ATGAGT-AAAAAAAATGAACTTTTCTTCTCAATGCATGGCTTTCACTTCACGTTTC
1 ATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTC
2978652 TCAATGCAAA
Statistics
Matches: 600, Mismatches: 111, Indels: 46
0.79 0.15 0.06
Matches are distributed among these distances:
166 1 0.00
167 123 0.20
168 32 0.05
169 115 0.19
170 61 0.10
171 178 0.30
172 90 0.15
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (171 bp):
ATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCAAATGCGA
ACATTCAATTATGATCTGTTTTAACCAAAAATGAAAAAAAATTCAGATTAAAATCATTTATAAAG
TTATAAAACCATTTAAAGCGAGTAACAAGGCCTTCGAAGGC
Found at i:2978574 original size:340 final size:338
Alignment explanation
Indices: 2977806--2978658 Score: 949
Period size: 340 Copynumber: 2.5 Consensus size: 338
2977796 ACATTTCTTG
* * * ** * *
2977806 ATGCGAACGTTCAACTATGATCTGTTTTAACCAAAAATAAAAAACAAATTTAGTTCAAAATCATT
1 ATGCGAACATTCAATTATGATCAGTTTTAACCAAAAAGGAAAAA-AAATTCAGATCAAAATCATT
* * * *
2977871 TATAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCCTTCGAAGGCATAAATGACTATAACTG
65 TATAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCCTTCGAAGTCATGAGTGACTATAAATG
* * * *
2977936 GACTTTTCTTATGAATGGGTGGCTTTCGCTTCATGTTTCTCAATGCGAATATTCAATTATTATCT
130 GACTTTTCTTATCAATGGATGGCTTTCGCTTCATGTTTCTCAATGCGAACATTCAATTATGATCT
*
2978001 TTTTTAACCAGAAACAAAAAAAAAGTTTAAAATCATTAATAAAGTTAAAAAACCATTTAAAGCGA
195 GTTTTAACCAGAAACAAAAAAAAAGTTTAAAATCATTAATAAAGTTAAAAAACCATTTAAAGCGA
** * * * *
2978066 GTAATAAGGCCTTCAAAGGAATGATTGTCGATGAATAGACTTTTCTCGTCAATGGATGGGGTTTG
260 GTAATAAGGCCTTCAAAGGAATGAACGACGATAAATAAACTTTTCTCGTCAATGGATGGGGTTTA
2978131 CTTCATGTCTCCAA
325 CTTCATGTCTCCAA
*
2978145 ATGTGAACATTCAATTATGATCAGTTTTAACCAAAAAGGAAAAAAAATTCAGATCAAAATCATTT
1 ATGCGAACATTCAATTATGATCAGTTTTAACCAAAAAGGAAAAAAAATTCAGATCAAAATCATTT
* *
2978210 ATAAAGTTATAAAAGCATTTAAAGCAAGTAACAAGGCCTTCGAAGTCATGAGTGACTATAAATGG
66 ATAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCCTTCGAAGTCATGAGTGACTATAAATGG
* * *
2978275 ACTTTTCTTATCAATGGATGGCTTTGGCTTCATGTTTC-CTAATGCGAACATTTAGTTATGATCT
131 ACTTTTCTTATCAATGGATGGCTTTCGCTTCATGTTTCTC-AATGCGAACATTCAATTATGATCT
* * * *
2978339 GTTTTAACCA-AAATGAAAAAATGTCAA-TTTAAAATCATTTATAAGAG-TAAAAACCCATTTAA
195 GTTTTAACCAGAAA-CAAAAAA---AAAGTTTAAAATCATTAATAA-AGTTAAAAAACCATTTAA
** * * * *
2978401 AGC-ATGTAACT-A-GCCTGTTGAAGGCATGAACGACTATAAATAAACTTTTTTTGTCAATGGAT
255 AGCGA-GTAA-TAAGGCCT-TCAAAGGAATGAACGACGATAAATAAACTTTTCTCGTCAATGGAT
* *
2978463 -GGTTTTCACTTCATGAT-TCCAG
317 GGGGTTT-ACTTCATG-TCTCCAA
* * * * * * * *
2978485 ATGCGAACATTGAATTATTAT-ATGTTTTAGCTAGAAATGAAAGAAAATTCA-ATTTAAAATCAT
1 ATGCGAACATTCAATTATGATCA-GTTTTAACCAAAAAGGAAAAAAAATTCAGA-TCAAAATCAT
* * * ** *
2978548 TTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCGAAGGT-ATGAGT-AAAAAAAA
64 TTATAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCCTTCGAA-GTCATGAGTGACTATAAA
* * * * *
2978611 TGAACTTTTCTTCTCAATGCATGGCTTTCACTTCACGTTTCTCAATGC
128 TGGACTTTTCTTATCAATGGATGGCTTTCGCTTCATGTTTCTCAATGC
2978659 AAACTGTTGG
Statistics
Matches: 436, Mismatches: 63, Indels: 30
0.82 0.12 0.06
Matches are distributed among these distances:
337 4 0.01
338 148 0.34
339 95 0.22
340 181 0.42
341 8 0.02
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (338 bp):
ATGCGAACATTCAATTATGATCAGTTTTAACCAAAAAGGAAAAAAAATTCAGATCAAAATCATTT
ATAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCCTTCGAAGTCATGAGTGACTATAAATGG
ACTTTTCTTATCAATGGATGGCTTTCGCTTCATGTTTCTCAATGCGAACATTCAATTATGATCTG
TTTTAACCAGAAACAAAAAAAAAGTTTAAAATCATTAATAAAGTTAAAAAACCATTTAAAGCGAG
TAATAAGGCCTTCAAAGGAATGAACGACGATAAATAAACTTTTCTCGTCAATGGATGGGGTTTAC
TTCATGTCTCCAA
Found at i:2979357 original size:35 final size:35
Alignment explanation
Indices: 2979310--2979430 Score: 163
Period size: 35 Copynumber: 3.4 Consensus size: 35
2979300 CCTTTAGAAA
*
2979310 CCCAATTAACTTAATTGTTTAATTTAATCAATTAGG
1 CCCAA-TAACTTAATTGTTTAATTTAATTAATTAGG
****
2979346 CCCAATAACTTAATTAAACAATTTAATTAATTAGG
1 CCCAATAACTTAATTGTTTAATTTAATTAATTAGG
2979381 CCCAATAACTTAATTGTTTAATTTAATTAATTA-G
1 CCCAATAACTTAATTGTTTAATTTAATTAATTAGG
*
2979415 CCTCAATGACTTAATT
1 CC-CAATAACTTAATT
2979431 AAACAATTTA
Statistics
Matches: 74, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
34 3 0.04
35 66 0.89
36 5 0.07
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.40
Consensus pattern (35 bp):
CCCAATAACTTAATTGTTTAATTTAATTAATTAGG
Found at i:2979395 original size:18 final size:18
Alignment explanation
Indices: 2979339--2979395 Score: 57
Period size: 18 Copynumber: 3.2 Consensus size: 18
2979329 TAATTTAATC
2979339 AATTAGGCCCAATAACTT
1 AATTAGGCCCAATAACTT
**
2979357 AATTA--AACAATTTAA-TT
1 AATTAGGCCCAA--TAACTT
2979374 AATTAGGCCCAATAACTT
1 AATTAGGCCCAATAACTT
2979392 AATT
1 AATT
2979396 GTTTAATTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 10
0.68 0.09 0.23
Matches are distributed among these distances:
16 3 0.10
17 10 0.33
18 14 0.47
19 3 0.10
ACGTcount: A:0.44, C:0.16, G:0.07, T:0.33
Consensus pattern (18 bp):
AATTAGGCCCAATAACTT
Found at i:2979396 original size:70 final size:71
Alignment explanation
Indices: 2979310--2979464 Score: 235
Period size: 70 Copynumber: 2.2 Consensus size: 71
2979300 CCTTTAGAAA
2979310 CCCAATTAACTTAATTGTTTAATTTAATCAATTAGGCC-CAATAACTTAATTAAACAATTTAATT
1 CCCAATTAACTTAATTGTTTAATTTAATCAATTA-GCCTCAATAACTTAATTAAACAATTTAATT
2979374 AATTAGG
65 AATTAGG
* * *
2979381 CCCAA-TAACTTAATTGTTTAATTTAATTAATTAGCCTCAATGACTTAATTAAACAATTTAGTTA
1 CCCAATTAACTTAATTGTTTAATTTAATCAATTAGCCTCAATAACTTAATTAAACAATTTAATTA
2979445 ATTAGG
66 ATTAGG
*
2979451 CACAACTTAA-TTAA
1 CCCAA-TTAACTTAA
2979465 ACAATTTTAA
Statistics
Matches: 77, Mismatches: 4, Indels: 6
0.89 0.05 0.07
Matches are distributed among these distances:
69 3 0.04
70 62 0.81
71 9 0.12
72 3 0.04
ACGTcount: A:0.41, C:0.14, G:0.07, T:0.38
Consensus pattern (71 bp):
CCCAATTAACTTAATTGTTTAATTTAATCAATTAGCCTCAATAACTTAATTAAACAATTTAATTA
ATTAGG
Found at i:2979439 original size:35 final size:35
Alignment explanation
Indices: 2979330--2979471 Score: 175
Period size: 35 Copynumber: 4.1 Consensus size: 35
2979320 TTAATTGTTT
*
2979330 AATTTAATCAATTAGGCCCAATAACTTAATTAAAC
1 AATTTAATTAATTAGGCCCAATAACTTAATTAAAC
****
2979365 AATTTAATTAATTAGGCCCAATAACTTAATTGTTT
1 AATTTAATTAATTAGGCCCAATAACTTAATTAAAC
*
2979400 AATTTAATTAATTA-GCCTCAATGACTTAATTAAAC
1 AATTTAATTAATTAGGCC-CAATAACTTAATTAAAC
* *
2979435 AATTTAGTTAATTAGG--C-ACAACTTAATTAAAC
1 AATTTAATTAATTAGGCCCAATAACTTAATTAAAC
2979467 AATTT
1 AATTT
2979472 TAATCAAGTG
Statistics
Matches: 92, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
32 18 0.20
33 1 0.01
34 3 0.03
35 69 0.75
36 1 0.01
ACGTcount: A:0.42, C:0.13, G:0.07, T:0.37
Consensus pattern (35 bp):
AATTTAATTAATTAGGCCCAATAACTTAATTAAAC
Found at i:2981303 original size:14 final size:14
Alignment explanation
Indices: 2981284--2981311 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
2981274 TCAATATTCA
2981284 ACCTTTTGATCAAT
1 ACCTTTTGATCAAT
2981298 ACCTTTTGATCAAT
1 ACCTTTTGATCAAT
2981312 TGAACATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.21, G:0.07, T:0.43
Consensus pattern (14 bp):
ACCTTTTGATCAAT
Found at i:2990000 original size:171 final size:169
Alignment explanation
Indices: 2989642--2990011 Score: 370
Period size: 171 Copynumber: 2.2 Consensus size: 169
2989632 TTTCATTTTT
* * * ** *
2989642 TGTTAAAACATATCACAATTTGATGTTTGCATCAAGAAACGTCATGCAAAAGCCATCTATTGATA
1 TGTTAAAACATATCATAA-TTGATGTTTGCATCAAGAAACGACAAGCAAAAGCCAAATATTGACA
* * * *
2989707 AGAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTATTTATTCACTTGAAATGGTTATATA
65 AGAAAGCCCATTTATAGTCACTCATGACTTTGAAAGACTAGTTATTCACTTGAAATGGTTATATA
* * ** * * * *
2989772 ATCTTACAAAAGATATTGAATTGAATTTTTTTTCATTTTT
130 ATCTTACAAAAGATATTGAAGTCAAAATTGTATCACTTTC
* * *
2989812 TGTTAAAATAGATCATAATCTGATGTTTGCATCAAGAAAC-ACGAAGCGAAAGCCAAATATTGAC
1 TGTTAAAACATATCATAAT-TGATGTTTGCATCAAGAAACGAC-AAGCAAAAGCCAAATATTGAC
* * * * * *
2989876 ATGAAAAGCCCATTTATAGTCACTCAT-ACTTTCGAAAGACTCGTTACTT-GCTTTACATGGTTT
64 AAG-AAAGCCCATTTATAGTCACTCATGACTTT-GAAAGACTAGTTA-TTCACTTGAAATGGTTA
* * *
2989939 TATAATCTTATAAATGAT-TTTAAGTCAAAATTGTATCACTTTC
126 TATAATCTTACAAAAGATATTGAAGTCAAAATTGTATCACTTTC
2989982 TGTTCAAAACATATCATAATTGGATGTTTG
1 TGTT-AAAACATATCATAATT-GATGTTTG
2990012 TATTGAAAAG
Statistics
Matches: 161, Mismatches: 32, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
169 2 0.01
170 78 0.48
171 79 0.49
172 2 0.01
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.36
Consensus pattern (169 bp):
TGTTAAAACATATCATAATTGATGTTTGCATCAAGAAACGACAAGCAAAAGCCAAATATTGACAA
GAAAGCCCATTTATAGTCACTCATGACTTTGAAAGACTAGTTATTCACTTGAAATGGTTATATAA
TCTTACAAAAGATATTGAAGTCAAAATTGTATCACTTTC
Found at i:2991425 original size:21 final size:22
Alignment explanation
Indices: 2991399--2991439 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
2991389 GCTGCCAAAA
2991399 TAGAATG-TTTCTCGCTGCAGC
1 TAGAATGCTTTCTCGCTGCAGC
*
2991420 TAGAATGCTTTCTTGCTGCA
1 TAGAATGCTTTCTCGCTGCA
2991440 ACGAGAAGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (22 bp):
TAGAATGCTTTCTCGCTGCAGC
Found at i:2991446 original size:22 final size:21
Alignment explanation
Indices: 2991400--2991446 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
2991390 CTGCCAAAAT
* *
2991400 AGAATGTTTCTCGCTGCAGCT
1 AGAATGTTTCTCGCTGCAACG
*
2991421 AGAATGCTTTCTTGCTGCAACG
1 AGAATG-TTTCTCGCTGCAACG
2991443 AGAA
1 AGAA
2991447 GCAGGGCACC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 6 0.27
22 16 0.73
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (21 bp):
AGAATGTTTCTCGCTGCAACG
Found at i:2999022 original size:19 final size:19
Alignment explanation
Indices: 2998981--2999022 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
2998971 GAAGAAGGAG
*
2998981 AAGAAGCTGTTGGAGAATG
1 AAGAAGCTGTTGGAGAATA
2999000 AAGAAGCTGTTGGAAGAA-A
1 AAGAAGCTGTTGG-AGAATA
2999019 AAGA
1 AAGA
2999023 TATTTATAGC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.45, C:0.05, G:0.33, T:0.17
Consensus pattern (19 bp):
AAGAAGCTGTTGGAGAATA
Found at i:2999694 original size:170 final size:170
Alignment explanation
Indices: 2999412--3002224 Score: 2204
Period size: 170 Copynumber: 16.5 Consensus size: 170
2999402 AGGTCTCACT
* * * * * *
2999412 GTTTTATAATCTTATAAATGATTTTAAATTGATTTTTTTTAATTTTTGGTTAAAACAAATCGTAA
1 GTTTTATAATCTTATAAATAATTTTAAATAGAATTTTTTTCATTTTTTGTTAAAACAAATCATAA
* *** * * *
2999477 TTTGATATTTGCATCAAGAAACATGAAACAAAAGGCATCCATTGACAAGAAAAGTCCATTTATAG
66 TTTGATGTTTGCATTGGGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAG
* *
2999542 TCACTCATGCCTTCGAAAGCCTAGTTAGTCGCTTTGAATG
131 TCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATG
* * *
2999582 GTTTTATAATCCTATAAATAATTTTGAATAG-ATTCTTTTTCATTTTTTGTTAAAACAAAGCATA
1 GTTTTATAATCTTATAAATAATTTTAAATAGAATT-TTTTTCATTTTTTGTTAAAACAAATCATA
* * ** * * *
2999646 AATTGTTGTTTAAATTGGGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCACTGATT
65 ATTTGATGTTTGCATTGGGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATA
* * *
2999711 GTCACTCATGCCTTCGAAAGCCTAGTTGCTAGCTCTT-AATT
130 GTCACTCATGCCTTCGAAAGCCTAGTTACTCGCT-TTAAATG
* * *
2999752 GTTTTATTATCTTATAAATAATTTTAAATTGAATTTTTTTTTC-TGTTTTGGTTAAAA-AAGATC
1 GTTTTATAATCTTATAAATAATTTTAAATAGAA--TTTTTTTCAT-TTTTTGTTAAAACAA-ATC
* * ** * * * * *
2999815 ATAATTTCATGTTTGCATTAGGAAATGTCATGCGAATGCCATCCATTGACAAGAAATGTTCATTT
62 ATAATTTGATGTTTGCATTGGGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTT
* * * * *
2999880 ATAGTCACCCATGCCTTC-AAAACCTATTTACTCACTTGAAATG
127 ATAGTCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATG
** ** * * * *
2999923 GTTTTATAATCTTATAAA-AGAAATTAGCTTA-AATTTTTTTTAATTTTTGTTAAAACAGATCAA
1 GTTTTATAATCTTATAAATA-ATTTTA-AATAGAATTTTTTTCATTTTTTGTTAAAACAAATCAT
* * * * *
2999986 AATTTGATGTTTGCATTAGGAAACATCATGC-AAATCCTATCTATTGACAAGAAAAGTCCATTTA
64 AATTTGATGTTTGCATTGGGAAACATGAAGCGAAAGCC-ATCCATTGACAAGAAAAGTCCATTTA
* * * * *
3000050 TAGTCACTCATGCCTTCAAAAG-CTAATTTATTTGCTTGAAATG
128 TAGTCACTCATGCCTTCGAAAGCCT-AGTTACTCGCTTTAAATG
* * * * * ** * ***
3000093 ATTATATAATCTTATAAA-AGATATTGAATTGAATTGCTTTCATTTTTTTTTAAAATTGATCATA
1 GTTTTATAATCTTATAAATA-ATTTTAAATAGAATTTTTTTCATTTTTTGTTAAAACAAATCATA
* * *** * * ** * *
3000157 ATCTGATGTTTACATCAAGAAACGTGAAGCGAAAGACAGACATTGACAAGGAAAGCCCATTTATA
65 ATTTGATGTTTGCATTGGGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATA
* * * * * *
3000222 GTCACCCATACCTTCGAAAGACTCGTTACTCACTTTACATG
130 GTCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATG
* * * * *
3000263 GTTTTATAATCTTATAAATGATTTTAAGTCA-AAATTTTTTCA-TTTTTGATTTCAAACACATCA
1 GTTTTATAATCTTATAAATAATTTTAAAT-AGAATTTTTTTCATTTTTTG--TTAAAACAAATCA
* * * * * * *
3000326 TAATTGGATGTTTGCATT-GCAAAGC-TTATAGTGAAAGCCATTCATTGACACGAAAAGTCCGTT
63 TAATTTGATGTTTGCATTGGGAAA-CATGA-AGCGAAAGCCATCCATTGACAAGAAAAGTCCATT
* * ** * * * *
3000389 TATACTCACTCATTCCTTTAAAACCCTTGTTACTCGCTTTAAGTA
126 TATAGTCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATG
* * * * *
3000434 GTTTTATAA-CTTTCTAAATAATTTTAAATTGAATTATTTTTCA-TTTTTGTTTAAACAGATTAT
1 GTTTTATAATC-TTATAAATAATTTTAAATAGAATT-TTTTTCATTTTTTGTTAAAACAAATCAT
*** *
3000497 AATTTGATGTTTGCATTGGGAAACATGAAGCGAAAAATATCCATTGACAATAAAAGTCCATTTAT
64 AATTTGATGTTTGCATTGGGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTAT
* *
3000562 AGCCACTCATGCCTTTC-AAAGCCTAGTTACTTGC-TTAGAATG
129 AGTCACTCATGCC-TTCGAAAGCCTAGTTACTCGCTTTA-AATG
* * * * * *
3000604 GTTTTATAATCTTATAAATGATTTTGAAAT-GAAATTTTCTAATTTTTGGTTAAAACTAATCGA-
1 GTTTTATAATCTTATAAATAATTTT-AAATAGAATTTTTTTCATTTTTTGTTAAAACAAATC-AT
* * * * *
3000667 AATTTGATGTTTGCATTGGGAAACATGAAAC-AAAGACATCTATTGATAAGAAATGTCCATTTAT
64 AATTTGATGTTTGCATTGGGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTAT
* * * ** * * *
3000731 GGCCACTAGAT-TTTTTGAAAGGCTAGTTACTCGCTTTAAAAG
129 AGTCACT-CATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATG
* * ** * * * * *
3000773 GTTTTATAATCTTATAAATGATATTAAATTGAGGTTTTTTTTCATTTTTGGTTGAAATAGATCCT
1 GTTTTATAATCTTATAAATAATTTTAAA-T-AGAATTTTTTTCATTTTTTGTTAAAACAAATCAT
* * * * * * *
3000838 AATTTGCTGCTTGCATTGGGAAATATGAAGCAAAAGCTATCCATTGATAAGAAAACTCCATTTAT
64 AATTTGATGTTTGCATTGGGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTAT
* * * * * **
3000903 AGTCACTTATGCTTTCAAAAGCCCAGTTACTTGCTACAAATG
129 AGTCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATG
* * * *
3000945 ATTTTATAATCCTATAAATAATTTTAAATCA-AATTTTTTTCATTTTTGGTTAAAACATATCATA
1 GTTTTATAATCTTATAAATAATTTTAAAT-AGAATTTTTTTCATTTTTTGTTAAAACAAATCATA
* ** * * * * * *
3001009 TTTTCTTGTTTGCATCGGGAAACATGTAGCCAAAGCAATCCATTGACAAGAAATGTCCATTTCTA
65 ATTTGATGTTTGCATTGGGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATA
* * * * *
3001074 GCCATTCATGCCTTTG-AAGAACTAGTTACTCTCTTTAAATG
130 GTCACTCATGCCTTCGAAAG-CCTAGTTACTCGCTTTAAATG
* * * * *
3001115 ATTTTGTAATC-TAAAAAGTAATTTTAAA-ATGAATTTCATTTCATTTTTGGTTAAAACAAATCA
1 GTTTTATAATCTTATAAA-TAATTTTAAATA-GAATTT-TTTTCATTTTTTGTTAAAACAAATCA
* * * * * * * * * * *
3001178 TAATTGGATGTTTGCACTGAGAACCATAAACCGAAAGCAATCCATCGAAAAGAAAAGTCCACTTG
63 TAATTTGATGTTTGCATTGGGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTA
* * * *
3001243 TAGTCACTCATACTTTCAAAAGCCTAGTTTA-TCACTTTAAATG
128 TAGTCACTCATGCCTTCGAAAGCCTAG-TTACTCGCTTTAAATG
* * * * *
3001286 GTTTTATAATCTTATAAATGATTTTAAATCA-ATTTTTTTTTTCATTTTTGGTTAAAACAGATGA
1 GTTTTATAATCTTATAAATAATTTTAAAT-AGA--ATTTTTTTCATTTTTTGTTAAAACAAATCA
* * ** * * * * *
3001350 TAATTGGATGTTTGCTTTGGGAAATGTGAAGCAAAAGCAATCCGTTGACAAGAAAAGTCTAGTTA
63 TAATTTGATGTTTGCATTGGGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTA
* * * * **
3001415 TAGCCATTCATGCCTTCGAAAGCCTAATTACTTGCTTTACGTG
128 TAGTCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATG
* * * *
3001458 GTTTTATAA-CTTTATAAATGATTTTAGATTGAATTTTTTTCA-TTTTTGTTTAAACAAATCATA
1 GTTTTATAATC-TTATAAATAATTTTAAATAGAATTTTTTTCATTTTTTGTTAAAACAAATCATA
** * * * * *
3001521 ATTTGATGTTTTGCATCAGGAAACGTGAAGCGAAAGCTATCCATTGA-TAGAAAAATTTCATTTA
65 ATTTGATG-TTTGCATTGGGAAACATGAAGCGAAAGCCATCCATTGACAAG-AAAAGTCCATTTA
* * * *
3001585 TAGTCACTCATGCCTTCGAAAGCCTTGTTACTTGTTTTAAATA
128 TAGTCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATG
* * *
3001628 GTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTTCA-TTTTTGTTAAAACGGAA-CAT
1 GTTTTATAATCTTATAAATAATTTTAAATAGAA-TTTTTTTCATTTTTTGTTAAAAC-AAATCAT
* * * * * * *
3001691 AAATTGTTGTTTGCATTAGGAAACGTGAAGCAAAAGCCATCCATTCAAAAGAAAAGTCCATTTAT
64 AATTTGATGTTTGCATTGGGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTAT
*
3001756 AGTCACTCATACCTTCGAAAGCCTAGTTACTCGCTTTAAATG
129 AGTCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATG
* * * * * ** *
3001798 GTCTTAAAATCTAATAAATAATTTTGAATTGAAGTTTTTTTTTTTTAATTTTGGTTGAAACAAAT
1 GTTTTATAATCTTATAAATAATTTTAAATAGAA--TTTTTTTCATT--TTTT-GTTAAAACAAAT
* * * ** * * *
3001863 CATAATTTGTTGTTTGCATTGAGGAAACTTGAAGTGAAAGTAATCCATTGGCAAGCAATGTCCAT
61 CATAATTTGATGTTTGCATTG-GGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCAT
* * ** * * * *
3001928 TTATGGTCACTTATAACTTTGAAAGCCTAGTTATTCACTTAAAATG
125 TTATAGTCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATG
* * * * ** *
3001974 GTTTTATAATCTTATAAATAATTTTAAATCGAATATTTTTACATTTTTTCTTAAAATAGTTCTTA
1 GTTTTATAATCTTATAAATAATTTTAAATAGAAT-TTTTTTCATTTTTTGTTAAAACAAATCATA
* ** * * ** **
3002039 ATTTGATGTTTGTATCAGGAAACATGAAGCGAAAGTCATTCATTGACAAGGGAAGTTTATTTATA
65 ATTTGATGTTTGCATTGGGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATA
** * * * *
3002104 GTCACTCATGCCTTTAAAAGCCAAGTTATTTG-TTGTACATG
130 GTCACTCATGCCTTCGAAAGCCTAGTTACTCGCTT-TAAATG
* * * *** * * *
3002145 GTTTTATAAT-TTATGAATGATTTTAAATAAAAAAACATTTTCATTTTTGGTTAAAACATATCAA
1 GTTTTATAATCTTATAAATAATTTTAAAT--AGAATTTTTTTCATTTTTTGTTAAAACAAATCAT
*
3002209 AATTGGATGTTTGCAT
64 AATTTGATGTTTGCAT
3002225 CGGAAAGTGC
Statistics
Matches: 2094, Mismatches: 473, Indels: 151
0.77 0.17 0.06
Matches are distributed among these distances:
168 10 0.00
169 217 0.10
170 870 0.42
171 501 0.24
172 346 0.17
173 10 0.00
174 7 0.00
175 33 0.02
176 100 0.05
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.39
Consensus pattern (170 bp):
GTTTTATAATCTTATAAATAATTTTAAATAGAATTTTTTTCATTTTTTGTTAAAACAAATCATAA
TTTGATGTTTGCATTGGGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAG
TCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATG
Found at i:3000058 original size:341 final size:338
Alignment explanation
Indices: 2999411--3002224 Score: 2193
Period size: 341 Copynumber: 8.2 Consensus size: 338
2999401 AAGGTCTCAC
* * *
2999411 TGTTTTATAATCTTATAAATGATTTTAAATTG-A-TTTTTTTTAATTTTTGGTTAAAACAAATCG
1 TGTTTTATAATCTTATAAATAATTTTAAATTGAATTTTTTTTTCATTTTTGGTTAAAA-AAATCA
* * * * * *
2999474 TAATTTGATATTTGCATCAAGAAACATGAAACAAAAGGCATCCATTGACAAGAAAAGTCCATTTA
65 TAATTTGATGTTTGCATTAGGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTA
* * * * * *
2999539 TAGTCACTCATGCCTTCGAAAGCCTAGTTAGTCGCTTTGAATGGTTTTATAATCCTATAAATAAT
130 TAGTCACTCATGCCTTC-AAAACCTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGAT
* * * * * * **
2999604 TTTGAAT-AGATTCTTTTTCATTTTTTGTTAAAACAAAGCATAAA-TTGTTGTTTAAATTGGGAA
194 TTTAAATCAAATTTTTTTTCA-TTTTTGTTAAAACAGATCA-AAATTTGATGTTTGCATTGGGAA
* * *
2999667 ACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCACTGATTGTCACTCATGCCTTCGAAAGC
257 ACATGAAGC-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGC
* *
2999732 CTAGTTGCTAGCTCTTAAT
321 CTAGTTACTCGCT-TTAAT
*
2999751 TGTTTTATTATCTTATAAATAATTTTAAATTGAATTTTTTTTTC-TGTTTTGGTTAAAAAAGATC
1 TGTTTTATAATCTTATAAATAATTTTAAATTGAATTTTTTTTTCAT-TTTTGGTTAAAAAA-ATC
* ** * * * * *
2999815 ATAATTTCATGTTTGCATTAGGAAATGTCATGCGAATGCCATCCATTGACAAGAAATGTTCATTT
64 ATAATTTGATGTTTGCATTAGGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTT
* * * * *
2999880 ATAGTCACCCATGCCTTCAAAACCTATTTACTCACTTGAAATGGTTTTATAATCTTATAAAAGAA
129 ATAGTCACTCATGCCTTCAAAACCTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGAT
* ** * * *
2999945 ATTAGCTTAAATTTTTTTTAATTTTTGTTAAAACAGATCAAAATTTGATGTTTGCATTAGGAAAC
194 TTTAAATCAAATTTTTTTTCATTTTTGTTAAAACAGATCAAAATTTGATGTTTGCATTGGGAAAC
* * * * *
3000010 ATCATGCAAATCCTATCTATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAG-CT
259 ATGAAGCAAAGCC-ATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCT
* * * * *
3000074 AATTTATTTGCTTGAAA
323 -AGTTACTCGCTTTAAT
* * * ** ** **
3000091 TGATTATATAATCTTATAAA-AGATATTGAATTGAA--TTGCTTTCATTTTTTTTTAAAATTGAT
1 TG-TTTTATAATCTTATAAATA-ATTTTAAATTGAATTTTTTTTTCATTTTTGGTTAAAA-AAAT
* * * * * * ** * *
3000153 CATAATCTGATGTTTACATCAAGAAACGTGAAGCGAAAGACAGACATTGACAAGGAAAGCCCATT
63 CATAATTTGATGTTTGCATTAGGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATT
* * * *
3000218 TATAGTCACCCATACCTTCGAAAGA-CTCGTTACTCACTTTACATGGTTTTATAATCTTATAAAT
128 TATAGTCACTCATGCCTTC-AAA-ACCTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAAT
* * * * * *
3000282 GATTTTAAGTCAAA-ATTTTTTCATTTTTGATTTCAAACACATCATAATTGGATGTTTGCATT-G
191 GATTTTAAATCAAATTTTTTTTCATTTTTG--TTAAAACAGATCAAAATTTGATGTTTGCATTGG
* * * * * * * * **
3000345 CAAAGC-TTATAGTGAAAGCCATTCATTGACACGAAAAGTCCGTTTATACTCACTCATTCCTTTA
254 GAAA-CATGA-AG-CAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCG
* *
3000409 AAACCCTTGTTACTCGCTTTAAGT
316 AAAGCCTAGTTACTCGCTTTAA-T
* * * * * * *
3000433 AGTTTTATAA-CTTTCTAAATAATTTTAAATTGAA-TTATTTTTCATTTTTGTTTAAACAGATTA
1 TGTTTTATAATC-TTATAAATAATTTTAAATTGAATTTTTTTTTCATTTTTGGTTAAAAAAATCA
* *** *
3000496 TAATTTGATGTTTGCATTGGGAAACATGAAGCGAAAAATATCCATTGACAATAAAAGTCCATTTA
65 TAATTTGATGTTTGCATTAGGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTA
* * **
3000561 TAGCCACTCATGCCTTTCAAAGCCTAGTTACTTGC-TTAGAATGGTTTTATAATCTTATAAATGA
130 TAGTCACTCATGCC-TTCAAAACCTAGTTACTCACTTTA-AATGGTTTTATAATCTTATAAATGA
* * * *
3000625 TTTTGAAATGAAA--TTTTCTAATTTTTGGTTAAAACTA-ATCGAAATTTGATGTTTGCATTGGG
193 TTTT-AAATCAAATTTTTTTTCATTTTT-GTTAAAAC-AGATCAAAATTTGATGTTTGCATTGGG
* * * * * * * * ** *
3000687 AAACATGAAACAAAGACATCTATTGATAAGAAATGTCCATTTATGGCCACTAGAT-TTTTTGAAA
255 AAACATGAAGCAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACT-CATGCCTTCGAAA
* *
3000751 GGCTAGTTACTCGCTTTAAAA
319 GCCTAGTTACTCGCTTT-AAT
* * * ** * * *
3000772 GGTTTTATAATCTTATAAATGATATTAAATTGAGGTTTTTTTTCATTTTTGGTTGAAATAGATCC
1 TGTTTTATAATCTTATAAATAATTTTAAATTGAATTTTTTTTTCATTTTTGGTT-AAAAAAATCA
* * * * * * * *
3000837 TAATTTGCTGCTTGCATTGGGAAATATGAAGCAAAAGCTATCCATTGATAAGAAAACTCCATTTA
65 TAATTTGATGTTTGCATTAGGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTA
* * * ** ** * * *
3000902 TAGTCACTTATGCTTTCAAAAGCCCAGTTACTTGCTACAAATGATTTTATAATCCTATAAATAAT
130 TAGTCACTCATGCCTTCAAAA-CCTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGAT
* * * ** *
3000967 TTTAAATCAAA-TTTTTTTCATTTTTGGTTAAAACATATCATATTTTCTTGTTTGCATCGGGAAA
194 TTTAAATCAAATTTTTTTTCATTTTT-GTTAAAACAGATCAAAATTTGATGTTTGCATTGGGAAA
* * * * * * * *
3001031 CATGTAGCCAAAGCAATCCATTGACAAGAAATGTCCATTTCTAGCCATTCATGCCTTTG-AAGAA
258 CATGAAG-CAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAG-C
* *
3001095 CTAGTTACTCTCTTTAAA
321 CTAGTTACTCGCTTTAAT
* * * **
3001113 TGATTTTGTAATC-TAAAAAGTAATTTTAAAATGAA-TTTCATTTCATTTTTGGTTAAAACAAAT
1 TG-TTTTATAATCTTATAAA-TAATTTTAAATTGAATTTTTTTTTCATTTTTGGTTAAAA-AAAT
* * * * * * * * *
3001176 CATAATTGGATGTTTGCACT-GAGAACCATAAACCGAAAGCAATCCATCGAAAAGAAAAGTCCAC
63 CATAATTTGATGTTTGCATTAG-GAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCAT
* * *
3001240 TTGTAGTCACTCATACTTTCAAAAGCCTAGTTTA-TCACTTTAAATGGTTTTATAATCTTATAAA
127 TTATAGTCACTCATGCCTTCAAAA-CCTAG-TTACTCACTTTAAATGGTTTTATAATCTTATAAA
* * * * *
3001304 TGATTTTAAATCAATTTTTTTTTTCATTTTTGGTTAAAACAGATGATAATTGGATGTTTGCTTTG
190 TGATTTTAAATCAA-ATTTTTTTTCATTTTT-GTTAAAACAGATCAAAATTTGATGTTTGCATTG
** * * * * * *
3001369 GGAAATGTGAAGCAAAAGCAATCCGTTGACAAGAAAAGTCTAGTTATAGCCATTCATGCCTTCGA
253 GGAAACATGAAGC-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGA
* * *
3001434 AAGCCTAATTACTTGCTTTACGT
317 AAGCCTAGTTACTCGCTTTA-AT
* * * * *
3001457 GGTTTTATAA-CTTTATAAATGATTTTAGATTGAA--TTTTTTTCATTTTTGTTTAAACAAATCA
1 TGTTTTATAATC-TTATAAATAATTTTAAATTGAATTTTTTTTTCATTTTTGGTTAAAAAAATCA
* * * * * *
3001519 TAATTTGATGTTTTGCATCAGGAAACGTGAAGCGAAAGCTATCCATTGA-TAGAAAAATTTCATT
65 TAATTTGATG-TTTGCATTAGGAAACATGAAGCGAAAGCCATCCATTGACAAG-AAAAGTCCATT
* * *** *
3001583 TATAGTCACTCATGCCTTCGAAAGCCTTGTTACTTGTTTTAAATAGTTTTATAATCTTATAAATG
128 TATAGTCACTCATGCCTTC-AAAACCTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATG
** * * * *
3001648 ATTTTAAATTGAATTTTTTTTCATTTTTGTTAAAACGGAACATAAA-TTGTTGTTTGCATTAGGA
192 ATTTTAAATCAAATTTTTTTTCATTTTTGTTAAAACAGATCA-AAATTTGATGTTTGCATTGGGA
* * * *
3001712 AACGTGAAGCAAAAGCCATCCATTCAAAAGAAAAGTCCATTTATAGTCACTCATACCTTCGAAAG
256 AACATGAAGC-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAG
3001777 CCTAGTTACTCGCTTTAAAT
320 CCTAGTTACTCGCTTT-AAT
* * * * * * * *
3001797 GGTCTTAAAATCTAATAAATAATTTTGAATTGAAGTTTTTTTTTTTTAATTTTGGTTGAAACAAA
1 TGTTTTATAATCTTATAAATAATTTTAAATTGAA---TTTTTTTTTCATTTTTGGTT-AAAAAAA
* * * ** * * *
3001862 TCATAATTTGTTGTTTGCATTGAGGAAACTTGAAGTGAAAGTAATCCATTGGCAAGCAATGTCCA
62 TCATAATTTGATGTTTGCATT-AGGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCA
* * * * * * * *
3001927 TTTATGGTCACTTATAACTTTGAAAGCCTAGTTATTCACTTAAAATGGTTTTATAATCTTATAAA
126 TTTATAGTCACTCAT-GCCTTCAAAACCTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAA
* * * * * * * ** * **
3001992 TAATTTTAAATCGAATATTTTTACATTTTTTCTTAAAATAGTTCTTAATTTGATGTTTGTATCAG
190 TGATTTTAAATCAAATTTTTTTTCA-TTTTTGTTAAAACAGATCAAAATTTGATGTTTGCATTGG
* * ** ** **
3002057 GAAACATGAAGCGAAAGTCATTCATTGACAAGGGAAGTTTATTTATAGTCACTCATGCCTTTAAA
254 GAAACATGAAGC-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA
* * *
3002122 AGCCAAGTTATTTG-TTGTACAT
318 AGCCTAGTTACTCGCTT-TA-AT
* * * ** ***** *
3002144 GGTTTTATAAT-TTATGAATGATTTTAAATAAAAAAACATTTTCATTTTTGGTTAAAACATATCA
1 TGTTTTATAATCTTATAAATAATTTTAAATTGAATTTTTTTTTCATTTTTGGTTAAAA-AAATCA
* *
3002208 AAATTGGATGTTTGCAT
65 TAATTTGATGTTTGCAT
3002225 CGGAAAGTGC
Statistics
Matches: 1963, Mismatches: 433, Indels: 153
0.77 0.17 0.06
Matches are distributed among these distances:
339 175 0.09
340 291 0.15
341 730 0.37
342 329 0.17
343 161 0.08
344 9 0.00
345 22 0.01
346 140 0.07
347 106 0.05
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.39
Consensus pattern (338 bp):
TGTTTTATAATCTTATAAATAATTTTAAATTGAATTTTTTTTTCATTTTTGGTTAAAAAAATCAT
AATTTGATGTTTGCATTAGGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTAT
AGTCACTCATGCCTTCAAAACCTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTT
TAAATCAAATTTTTTTTCATTTTTGTTAAAACAGATCAAAATTTGATGTTTGCATTGGGAAACAT
GAAGCAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTAGT
TACTCGCTTTAAT
Found at i:3000440 original size:511 final size:509
Alignment explanation
Indices: 2999412--3002168 Score: 1616
Period size: 511 Copynumber: 5.4 Consensus size: 509
2999402 AGGTCTCACT
* * * *
2999412 GTTTTATAATCTTATAAATGATTTTAAATTGATTTTTTTTAATTTTTGGTTAAAACAAATCGTAA
1 GTTTTATAATCTTATAAAAGATTTTAAATTAATTTTTTTTAATTTTT-GTTAAAACAGATCATAA
* * * * *
2999477 TTTGATATTTGCATCAAGAAACATGAAACAAAAGGC-ATCCATTGACAAGAAAAGTCCATTTATA
65 TTTGATGTTTGCATTAGGAAACATGAAGCAAAA-ACTATCCATTGACAAGAAAAGTCCATTTATA
* * *
2999541 GTCACTCATGCCTTCGAAAGCCTAGTTAGTCGCTTTG-AATGGTTTTATAATCCTATAAATA-AT
129 GTCACTCATGCCTTC-AAAGCCTAGTTACTTGC-TTGAAATGGTTTTATAATCTTATAAA-AGAT
* * ***
2999604 TTTGAATAG-ATTCTTTTTCATTTTTTGTTAAAACAAAGCATAAATTGTTGTTTAAATTGGGAAA
191 TTTGAATTGAATTC-TTTTCATTTTTTGTTAAAACAAAGCATAAATTGATGTTTAAATCAAGAAA
* ** * * * * *
2999668 CATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCACTGATTGTCACTCATGCCTTCGAAAGCC
255 CATGAAGCGAAAGACAGACATTGACAAGAAAAGCCCACTGATAGTCACCCATACCTTCGAAAGAC
* * * * * **
2999733 TAGTTGCTAGCTCTTAATTGTTTTATTATCTTATAAATAATTTTAAATTGAATTTTTTTTTCTGT
320 TAGTTACTAGCTCTTAATGGTTTTATAATCTTATAAATAATTTTAAAGTCAATAATTTTTTCTGT
* * * *
2999798 TTTGGTTAAAAAAGATCATAATTTCATGTTTGCATTAGGAAATGTCATGCGAATGCCATCCATTG
385 TTTGGTTAAAAAACATCATAATTGCATGTTTGCATTAGCAAATGTCATGCGAAAGCCATCCATTG
* * * *
2999863 ACAAGAAATGTTCATTTATAGTCACCCATGCCTTCAAAACCTATTTACTCACTTGAAATG
450 ACAAGAAAAGTCCATTTATACTCACCCATGCCTTCAAAACCTATTTACTCACTTGAAATA
** ** *
2999923 GTTTTATAATCTTATAAAAGAAATTAGCTTAAATTTTTTTTAATTTTTGTTAAAACAGATCAAAA
1 GTTTTATAATCTTATAAAAGATTTTAAATT-AATTTTTTTTAATTTTTGTTAAAACAGATCATAA
* * ** *
2999988 TTTGATGTTTGCATTAGGAAACATCATGCAAATCCTATCTATTGACAAGAAAAGTCCATTTATAG
65 TTTGATGTTTGCATTAGGAAACATGAAGCAAAAACTATCCATTGACAAGAAAAGTCCATTTATAG
* * * * *
3000053 TCACTCATGCCTTCAAAAG-CTAATTTATTTGCTTGAAATGATTATATAATCTTATAAAAGATAT
130 TCACTCATGCCTTC-AAAGCCT-AGTTACTTGCTTGAAATGGTTTTATAATCTTATAAAAGATTT
* *** * *
3000117 TGAATTGAATTGC-TTTCATTTTTTTTTAAAATTGATCAT-AATCTGATGTTTACATCAAGAAAC
193 TGAATTGAATT-CTTTTCATTTTTTGTTAAAACAAAGCATAAAT-TGATGTTTAAATCAAGAAAC
* * * *
3000180 GTGAAGCGAAAGACAGACATTGACAAGGAAAGCCCATTTATAGTCACCCATACCTTCGAAAGACT
256 ATGAAGCGAAAGACAGACATTGACAAGAAAAGCCCACTGATAGTCACCCATACCTTCGAAAGACT
* *
3000245 CGTTACTCA-CT-TTACATGGTTTTATAATCTTATAAATGATTTT-AAGTCAA-AATTTTTTCAT
321 AGTTACT-AGCTCTTA-ATGGTTTTATAATCTTATAAATAATTTTAAAGTCAATAATTTTTTC-T
* * * * * * *
3000306 -TTTTGATTTCAAACACATCATAATTGGATGTTTGCATT-GCAAA-GCTTATAGTGAAAGCCATT
383 GTTTTG-GTTAAAAAACATCATAATTGCATGTTTGCATTAGCAAATG-TCAT-GCGAAAGCCATC
* * * * * * * *
3000368 CATTGACACGAAAAGTCCGTTTATACTCACTCATTCCTTTAAAACCCT-TGTTACTCGCTTTAAG
445 CATTGACAAGAAAAGTCCATTTATACTCACCCATGCCTTCAAAA-CCTAT-TTACTCACTTGAAA
3000432 TA
508 TA
* * * * *
3000434 GTTTTATAA-CTTTCTAAATA-ATTTTAAATTGAATTATTTTTCATTTTTGTTTAAACAGATTAT
1 GTTTTATAATC-TTATAAA-AGATTTTAAATT-AATTTTTTTTAATTTTTGTTAAAACAGATCAT
* *
3000497 AATTTGATGTTTGCATTGGGAAACATGAAGCGAAAAA-TATCCATTGACAATAAAAGTCCATTTA
63 AATTTGATGTTTGCATTAGGAAACATGAAGC-AAAAACTATCCATTGACAAGAAAAGTCCATTTA
* *
3000561 TAGCCACTCATGCCTTTCAAAGCCTAGTTACTTGCTT-AGAATGGTTTTATAATCTTATAAATGA
127 TAGTCACTCATGCC-TTCAAAGCCTAGTTACTTGCTTGA-AATGGTTTTATAATCTTATAAAAGA
* * * * * * * ** ***
3000625 TTTTGAAATGAAATT-TTCTAATTTTTGGTTAAAACTAATCGA-AATTTGATGTTTGCATTGGGA
190 TTTTGAATTG-AATTCTTTTCATTTTTTGTTAAAACAAAGC-ATAAATTGATGTTTAAATCAAGA
* * * * * * * * * * * ** *
3000688 AACATGAAAC-AAAGACA-TCTATTGATAAGAAATGTCCATTTATGGCCA-CTAGATTTTTTGAA
253 AACATGAAGCGAAAGACAGAC-ATTGACAAGAAAAGCCCACTGATAGTCACCCATA-CCTTCGAA
* * * * * * * * *
3000750 AGGCTAGTTACTCGCT-TTAAAAGGTTTTATAATCTTATAAATGATATTAAATTGAGGT-TTTTT
316 AGACTAGTTACTAGCTCTT-AATGGTTTTATAATCTTATAAATAATTTTAAAGTCA-ATAATTTT
* * * * * * * * * * * *
3000813 TTCAT-TTTTGGTTGAAATAGATCCTAATTTGC-TGCTTGCATTGGGAAATATGAAGCAAAAGCT
379 TTC-TGTTTTGGTTAAAAAACATCATAA-TTGCATGTTTGCATTAGCAAATGTCATGCGAAAGCC
* * * ** * * * ** **
3000876 ATCCATTGATAAGAAAACTCCATTTATAGTCACTTATGCTTTCAAAAGCCCAGTTACTTGCTACA
442 ATCCATTGACAAGAAAAGTCCATTTATACTCACCCATGCCTTCAAAA-CCTATTTACTCACTTGA
3000941 AAT-
506 AATA
* * * * *
3000944 GATTTTATAATCCTATAAATA-ATTTTAAATCAAATTTTTTTCATTTTTGGTTAAAACATATCAT
1 G-TTTTATAATCTTATAAA-AGATTTTAAATTAATTTTTTTTAATTTTT-GTTAAAACAGATCAT
* ** ** * * * * * *
3001008 ATTTTCTTGTTTGCATCGGGAAACATGTAGCCAAAGCAATCCATTGACAAGAAATGTCCATTTCT
63 AATTTGATGTTTGCATTAGGAAACATGAAGCAAAAACTATCCATTGACAAGAAAAGTCCATTTAT
* * ** * * * *
3001073 AGCCATTCATGCCTTTGAAGAACTAGTTACTCT-CTTTAAATGATTTTGTAATC-TA-AAAAGTA
128 AGTCACTCATGCCTTCAAAG-CCTAGTTACT-TGCTTGAAATGGTTTTATAATCTTATAAAAG--
* * * * * ** *
3001135 ATTTTAAAATGAATTTCATTTCATTTTTGGTTAAAACAAATCAT-AATTGGATGTTTGCA-CTGA
189 ATTTTGAATTGAA-TTCTTTTCATTTTTTGTTAAAACAAAGCATAAATT-GATGTTTAAATC-AA
* * * * * * * *
3001198 GAACCATAAACCGAAAG-CA-ATCCATCGAAAAGAAAAGTCCACTTG-TAGTCACTCATACTTTC
251 GAAACATGAAGCGAAAGACAGA--CATTGACAAGAAAAGCCCAC-TGATAGTCACCCATACCTTC
* * * *
3001260 AAAAGCCTAGTTTA-TCA-CT-TTAAATGGTTTTATAATCTTATAAATGATTTTAAA-TCAATTT
313 GAAAGACTAG-TTACT-AGCTCTT-AATGGTTTTATAATCTTATAAATAATTTTAAAGTCAA-TA
* * * * * * * * * * *
3001321 TTTTTTTCAT-TTTTGGTTAAAACAGATGATAATTGGATGTTTGCTTTGGGAAATGTGAAGCAAA
374 ATTTTTTC-TGTTTTGGTTAAAAAACATCATAATTGCATGTTTGCATTAGCAAATGTCATGCGAA
* * * * ** * * **
3001385 AGCAATCCGTTGACAAGAAAAGTCTAGTTATAGC-CATTCATGCCTTCGAAAGCCTAATTACTTG
438 AGCCATCCATTGACAAGAAAAGTCCATTTATA-CTCACCCATGCCTTC-AAAACCTATTTACTCA
* ** *
3001449 CTTTACGTG
501 CTTGAAATA
* * * * *
3001458 GTTTTATAA-CTTTATAAATGATTTTAGATTGAA-TTTTTTTCATTTTTGTTTAAACAAATCATA
1 GTTTTATAATC-TTATAAAAGATTTTAAATT-AATTTTTTTTAATTTTTGTTAAAACAGATCATA
* * * * * * *
3001521 ATTTGATGTTTTGCATCAGGAAACGTGAAGCGAAAGCTATCCATTGA-TAGAAAAATTTCATTTA
64 ATTTGATG-TTTGCATTAGGAAACATGAAGCAAAAACTATCCATTGACAAG-AAAAGTCCATTTA
* * * * *
3001585 TAGTCACTCATGCCTTCGAAAGCCTTGTTACTTGTTTTAAATAGTTTTATAATCTTATAAATGAT
127 TAGTCACTCATGCCTTC-AAAGCCTAGTTACTTGCTTGAAATGGTTTTATAATCTTATAAAAGAT
* * * * ** * *
3001650 TTTAAATTGAATTTTTTTTCA-TTTTTGTTAAAACGGAA-CATAAATTGTTGTTTGCATTAGGAA
191 TTTGAATTGAA-TTCTTTTCATTTTTTGTTAAAAC-AAAGCATAAATTGATGTTTAAATCAAGAA
* * * ** * * * * * * *
3001713 ACGTGAAGCAAAAGCCATCCATTCAAAAGAAAAGTCCATTTATAGTCACTCATACCTTCGAAAGC
254 ACATGAAGCGAAAGACAGACATTGACAAGAAAAGCCCACTGATAGTCACCCATACCTTCGAAAGA
* * * * * * * **
3001778 CTAGTTACTCGCT-TTAAATGGTCTTAAAATCTAATAAATAATTTTGAATTGAAGTTTTTTTTTT
319 CTAGTTACTAGCTCTT-AATGGTTTTATAATCTTATAAATAATTTTAAAGTCAA--TAATTTTTT
* * * * * * * * *
3001842 TTAATTTTGGTTGAAACAA-ATCATAATTTG-TTGTTTGCATTGAGGAAACT-TGAAGTGAAAGT
381 CT-GTTTTGGTT-AAAAAACATCATAA-TTGCATGTTTGCATT-AGCAAA-TGTCATGCGAAAGC
* * * * ** ** * * * * * * *
3001904 AATCCATTGGCAAGCAATGTCCATTTATGGTCACTTATAACTTTGAAAGCCTAGTTATTCACTTA
441 CATCCATTGACAAGAAAAGTCCATTTATACTCACCCAT-GCCTTCAAAACCTATTTACTCACTTG
*
3001969 AAATG
505 AAATA
* * * * * *
3001974 GTTTTATAATCTTATAAATA-ATTTTAAATCGAA-TATTTTTACATTTTTTCTTAAAATAGTTCT
1 GTTTTATAATCTTATAAA-AGATTTTAAAT-TAATTTTTTTTA-A-TTTTTGTTAAAACAGATCA
* * * * * ** **
3002037 TAATTTGATGTTTGTATCAGGAAACATGAAGC-GAAAGTCATTCATTGACAAGGGAAGTTTATTT
62 TAATTTGATGTTTGCATTAGGAAACATGAAGCAAAAACT-ATCCATTGACAAGAAAAGTCCATTT
* * * * * *
3002101 ATAGTCACTCATGCCTTTAAAAGCCAAGTTATTTG-TTGTACATGGTTTTATAAT-TTATGAATG
126 ATAGTCACTCATGCC-TTCAAAGCCTAGTTACTTGCTTG-AAATGGTTTTATAATCTTATAAAAG
3002164 ATTTT
189 ATTTT
3002169 AAATAAAAAA
Statistics
Matches: 1774, Mismatches: 372, Indels: 195
0.76 0.16 0.08
Matches are distributed among these distances:
508 1 0.00
509 27 0.02
510 195 0.11
511 704 0.40
512 245 0.14
513 321 0.18
514 28 0.02
515 27 0.02
516 116 0.07
517 83 0.05
518 27 0.02
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.39
Consensus pattern (509 bp):
GTTTTATAATCTTATAAAAGATTTTAAATTAATTTTTTTTAATTTTTGTTAAAACAGATCATAAT
TTGATGTTTGCATTAGGAAACATGAAGCAAAAACTATCCATTGACAAGAAAAGTCCATTTATAGT
CACTCATGCCTTCAAAGCCTAGTTACTTGCTTGAAATGGTTTTATAATCTTATAAAAGATTTTGA
ATTGAATTCTTTTCATTTTTTGTTAAAACAAAGCATAAATTGATGTTTAAATCAAGAAACATGAA
GCGAAAGACAGACATTGACAAGAAAAGCCCACTGATAGTCACCCATACCTTCGAAAGACTAGTTA
CTAGCTCTTAATGGTTTTATAATCTTATAAATAATTTTAAAGTCAATAATTTTTTCTGTTTTGGT
TAAAAAACATCATAATTGCATGTTTGCATTAGCAAATGTCATGCGAAAGCCATCCATTGACAAGA
AAAGTCCATTTATACTCACCCATGCCTTCAAAACCTATTTACTCACTTGAAATA
Found at i:3002589 original size:171 final size:170
Alignment explanation
Indices: 3002240--3003155 Score: 872
Period size: 171 Copynumber: 5.4 Consensus size: 170
3002230 AGTGCATAGC
* * * *
3002240 GAAAGCCTTGTTATTCGCTTTAAGTGGTTTTATAA-CTCTATAAATGATTTTAAATTGAATTTGT
1 GAAAGCCTAGTTATTCGTTTTAAATGCTTTTATAATCT-TATAAATGATTTTAAATTGAATTT-T
* * * * * * *
3002304 TTTATTTTTTGTTTAAACAGCTTATAATTTGATGTTTACATCAGG-AAACGTGAAGCGAAAGCCA
64 TTCATTTTTTGTTAAAACAGATCATAATTTGTTGTTTGCATCAGGAAAAAGTGAAGCGAAAGCCA
* *
3002368 TCCATTGACAAGAAAAGTCAATTTATGGTCACTCATGCCTTT
129 TCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTT
* * * *
3002410 TAAAGCCTAGTTATTCATTTTAAATGCTTTTATAATCTTATACATAATTTTAAATTGAATTTGCT
1 GAAAGCCTAGTTATTCGTTTTAAATGCTTTTATAATCTTATAAATGATTTTAAATTGAATTT--T
* * *
3002475 TT-ATTTTTTGTTAAAACAGAACATAAATTGTTGTTTGCATCAGGAAAAAGTGAAGCAAAAGCCA
64 TTCATTTTTTGTTAAAACAGATCATAATTTGTTGTTTGCATCAGGAAAAAGTGAAGCGAAAGCCA
*
3002539 TTCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTT
129 TCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTT
* *
3002581 GAAAGCCTAGTTACTT-GTTTTGAATGCTTTTATAATCTTAT-AATGACTTTAAATTGAAGATTT
1 GAAAGCCTAGTTA-TTCGTTTTAAATGCTTTTATAATCTTATAAATGATTTTAAATTG-A-ATTT
* * * * ** * *
3002644 TTTCATTTTTTATCAAAACAGAACATAAATTGTTGTTTGCATTGGGAAACAGTGAAGTGAAAGCC
63 TTTCATTTTTTGTTAAAACAGATCATAATTTGTTGTTTGCATCAGGAAAAAGTGAAGCGAAAGCC
*
3002709 ATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGGCTTT
128 ATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTT
* * * * * * * *
3002752 GAAAGCTTAGTTACTCGCTTTAATTGATTTTATAATCTTATAAATAATTTTGAATCGAATATTTT
1 GAAAGCCTAGTTATTCGTTTTAAATGCTTTTATAATCTTATAAATGATTTTAAATTGAAT-TTTT
* ** * * * * * **
3002817 TCATTTTTGGTTGTAACATATCATAATTTGTTGTTTGCATCAAGAAACA-TAAAGCAAAAGTAAT
65 TCATTTTTTGTTAAAACAGATCATAATTTGTTGTTTGCATCAGGAAAAAGTGAAGCGAAAGCCAT
* * * ** *
3002881 CCATT-AGCAGGAAATGTCCATTTATAGTCGCTCATAACTTC
130 CCATTGA-CAAGAAAAGTCCATTTATAGTCACTCATGCCTTT
* * *
3002922 GAAAACCTAGTTACTC-TCTTTAAATGGC-TTTATAATCTTATAAATGATTTTAATATAGAAATT
1 GAAAGCCTAGTTATTCGT-TTTAAAT-GCTTTTATAATCTTATAAATGATTTTAA-ATTG-AATT
* * ** * *
3002985 TTTTCATTTTTGGTTAAAATAGATCATAATTTCATGTTTGCATC--GAGCAATGTGAAGCGAAAG
62 TTTTCATTTTTTGTTAAAACAGATCATAATTTGTTGTTTGCATCAGGA-AAAAGTGAAGCGAAAG
* * ** * *
3003048 CTATACATTGTGAAGAAAAGTCAATTTATAGTCACTCATACCTTT
126 CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTT
** * * * * *
3003093 G-AAGACCTTTTTACTCGCTTTAAGTG-TTTTATAA-CTTTATAAAT-AGTTTTGAATTAAATTT
1 GAAAG-CCTAGTTATTCGTTTTAAATGCTTTTATAATC-TTATAAATGA-TTTTAAATTGAATTT
3003154 TT
63 TT
3003156 ATTCACTCTT
Statistics
Matches: 617, Mismatches: 106, Indels: 48
0.80 0.14 0.06
Matches are distributed among these distances:
168 7 0.01
169 7 0.01
170 214 0.35
171 369 0.60
172 20 0.03
ACGTcount: A:0.34, C:0.13, G:0.14, T:0.39
Consensus pattern (170 bp):
GAAAGCCTAGTTATTCGTTTTAAATGCTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTT
CATTTTTTGTTAAAACAGATCATAATTTGTTGTTTGCATCAGGAAAAAGTGAAGCGAAAGCCATC
CATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTT
Found at i:3003083 original size:341 final size:339
Alignment explanation
Indices: 3002239--3003146 Score: 983
Period size: 341 Copynumber: 2.7 Consensus size: 339
3002229 AAGTGCATAG
* * * * *
3002239 CGAAAGCCTTGTTATTCGCTTTAAGTGGTTTTATAA-CTCTATAAATGATTTTAAATTG-AATTT
1 CGAAAGCCTAGTTACTCTCTTTAAATGGCTTTATAATCT-TATAAATGATTTTAAATTGAAATTT
* * * * * *
3002302 GTTTTATTTTTTGTTTAAACAGCTTATAATTTGATGTTTACATC-AGGAAACGTGAAGCGAAAGC
65 -TTTCATTTTTTGTTAAAACAGATCATAATTTGATGTTTGCATCGA-GAAAAGTGAAGCGAAAGC
* * * * **
3002366 CATCCATTGACAAGAAAAGTCAATTTATGGTCACTCATGCCTTTTAAAGCCTAGTTATTCATTTT
128 CATCCATTGACAAGAAAAGTCAATTTATAGTCACTCATGCCTTTGAAAGCTTAGTTACTCGCTTT
* * * *
3002431 AAATGCTTTTATAATCTTATACATAATTTTAAATTGAATTTGCTTTATTTTTTGTTAAAACAGAA
193 AAATG-TTTTATAATCTTATAAATAATTTTGAATCGAATTT-CTTTATTTTTGGTTAAAACAGAA
* * * *
3002496 CATAAATTGTTGTTTGCATCAGGAAAAAGTGAAGCAAAAGCCATTCATTGACAAGAAAAGTCCAT
256 CATAAATTGTTGTTTGCATCAAGAAAAAGTAAAGCAAAAGCAATCCATTGACAAGAAAAGTCCAT
**
3002561 TTATAGTCACTCATGCCTT
321 TTATAGTCACTCATAACTT
* * * *
3002580 TGAAAGCCTAGTTACT-TGTTTTGAAT-GCTTTTATAATCTTAT-AATGACTTTAAATTGAAGAT
1 CGAAAGCCTAGTTACTCT-CTTTAAATGGC-TTTATAATCTTATAAATGATTTTAAATTGAA-AT
* * * * * * * *
3002642 TTTTTCATTTTTTATCAAAACAGAACATAAATTGTTGTTTGCATTGGGAAACAGTGAAGTGAAAG
63 TTTTTCATTTTTTGTTAAAACAGATCATAATTTGATGTTTGCATCGAGAAA-AGTGAAGCGAAAG
* *
3002707 CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGGCTTTGAAAGCTTAGTTACTCGCTT
127 CCATCCATTGACAAGAAAAGTCAATTTATAGTCACTCATGCCTTTGAAAGCTTAGTTACTCGCTT
* ** *
3002772 TAATTGATTTTATAATCTTATAAATAATTTTGAATCGAATATT-TTTCATTTTTGGTTGTAACAT
192 TAAATG-TTTTATAATCTTATAAATAATTTTGAATCGAAT-TTCTTT-ATTTTTGGTTAAAACAG
* * * * * *
3002836 ATCATAATTTGTTGTTTGCATCAAGAAACA-TAAAGCAAAAGTAATCCATT-AGCAGGAAATGTC
254 AACATAAATTGTTGTTTGCATCAAGAAAAAGTAAAGCAAAAGCAATCCATTGA-CAAGAAAAGTC
*
3002899 CATTTATAGTCGCTCATAACTT
318 CATTTATAGTCACTCATAACTT
* *
3002921 CGAAAACCTAGTTACTCTCTTTAAATGGCTTTATAATCTTATAAATGATTTTAATATAGAAATTT
1 CGAAAGCCTAGTTACTCTCTTTAAATGGCTTTATAATCTTATAAATGATTTTAA-ATTGAAATTT
* * * * * *
3002986 TTTCATTTTTGGTTAAAATAGATCATAATTTCATGTTTGCATCGAGCAATGTGAAGCGAAAGCTA
65 TTTCATTTTTTGTTAAAACAGATCATAATTTGATGTTTGCATCGAGAAAAGTGAAGCGAAAGCCA
* ** * * *
3003051 TACATTGTGAAGAAAAGTCAATTTATAGTCACTCATACCTTTGAAGACCTT-TTTACTCGCTTTA
130 TCCATTGACAAGAAAAGTCAATTTATAGTCACTCATGCCTTTGAA-AGCTTAGTTACTCGCTTTA
* *
3003115 AGTGTTTTATAA-CTTTATAAATAGTTTTGAAT
194 AATGTTTTATAATC-TTATAAATAATTTTGAAT
3003147 TAAATTTTTA
Statistics
Matches: 468, Mismatches: 83, Indels: 33
0.80 0.14 0.06
Matches are distributed among these distances:
339 1 0.00
340 41 0.09
341 212 0.45
342 207 0.44
343 7 0.01
ACGTcount: A:0.34, C:0.13, G:0.14, T:0.39
Consensus pattern (339 bp):
CGAAAGCCTAGTTACTCTCTTTAAATGGCTTTATAATCTTATAAATGATTTTAAATTGAAATTTT
TTCATTTTTTGTTAAAACAGATCATAATTTGATGTTTGCATCGAGAAAAGTGAAGCGAAAGCCAT
CCATTGACAAGAAAAGTCAATTTATAGTCACTCATGCCTTTGAAAGCTTAGTTACTCGCTTTAAA
TGTTTTATAATCTTATAAATAATTTTGAATCGAATTTCTTTATTTTTGGTTAAAACAGAACATAA
ATTGTTGTTTGCATCAAGAAAAAGTAAAGCAAAAGCAATCCATTGACAAGAAAAGTCCATTTATA
GTCACTCATAACTT
Found at i:3003321 original size:117 final size:117
Alignment explanation
Indices: 3003098--3003321 Score: 276
Period size: 119 Copynumber: 1.9 Consensus size: 117
3003088 CCTTTGAAGA
* * * *
3003098 CCTTTTTACTCGCTTTAAGTGTTTTATAACTTTATAAATAGTTTTGAATTAAATTTTTATTCACT
1 CCTTGTTACTCACTTTAAGTGTTTTATAACTTTATAAATAGATTTAAATTAAATTTTTATT--CT
*
3003163 CTTGGTTAAACACAGATAATTTGATGTTTGCATTAGAAAACGCATAGCAAAAAT
64 CTTGGTTAAACACAGATAATTTGATGTTTGCATCAGAAAACGCATAGCAAAAAT
*
3003217 CCTTGTTACTCACTTTAAGTGGTTTTATAACTTTATAAAT-GATTTAAATTGAATTTTTCATT-T
1 CCTTGTTACTCACTTTAAGT-GTTTTATAACTTTATAAATAGATTTAAATTAAATTTTT-ATTCT
* * * *
3003280 -TT-GTTCAAATAGATTATAATTTGATGTTTGCATCAGGAAACG
64 CTTGGTT-AAACACA-GATAATTTGATGTTTGCATCAGAAAACG
3003322 TAAAGCTAAA
Statistics
Matches: 91, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
115 3 0.03
116 7 0.08
117 26 0.29
119 33 0.36
120 22 0.24
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.44
Consensus pattern (117 bp):
CCTTGTTACTCACTTTAAGTGTTTTATAACTTTATAAATAGATTTAAATTAAATTTTTATTCTCT
TGGTTAAACACAGATAATTTGATGTTTGCATCAGAAAACGCATAGCAAAAAT
Found at i:3004168 original size:171 final size:169
Alignment explanation
Indices: 3003221--3007063 Score: 3317
Period size: 170 Copynumber: 22.6 Consensus size: 169
3003211 AAAAATCCTT
*
3003221 GTTACTCACTTTAAGTGGTTTTATAA-CTTTATAAATGA-TTTAAATTGAA--TTTTTCATTTTT
1 GTTACTCACTTTAAATGGTTTTATAATC-TTATAAATGATTTTAAATTGAATTTTTTTCATTTTT
* * * ** * * *
3003282 GTTCAAATAGATTATAATTTGATGTTTGCATCAGGAAACGTAAAGCTAAAGCCATCCATTGATAA
65 GTTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCAAAAGCCATCCATTGACAA
* * * * *
3003347 GAAAAATCAATTTATAGCCACTCATACCTTCCAAAGCCTA
130 GAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTA
* * * *
3003387 GTTACTTC-TTTTAAATGCTTTCATAATCTTATAAATGATTTAAAATTGAATTTTTTTCATTTTT
1 GTTAC-TCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTCA-TTTT
* * * * * * * * *
3003451 TGTTAAAATAAAACATAAATTGTTGTTTGCATCAGGAAAATAGTGAAGCGATAA-CCATCCATTG
64 TGTTAAAACAGATCATAATTTGATGTTTGCAT-TGGGAAA-CGTGAAGC-AAAAGCCATCCATTG
* * *
3003515 ACAAGAAAAGTTCATTTATAGTTA-TCCATGCCTTCCAAAGCCTA
126 ACAAGAAAAGTCCATTTATAGTCACT-CATGCCTTCGAAAGCCTA
* * * *
3003559 GTTACTTC-TTTTAAATGCTTTTATAATCTTATAAATGATTTTGAATTGAATTTTTTTTATTTTT
1 GTTAC-TCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTCA-TTTT
* * * * * *
3003623 TGTTAAAATAGAACATAAATTGTTGCTTGCATCTGGAAAACAGTGAAGCAAAAGCCATCCATTGA
64 TGTTAAAACAGATCATAATTTGATGTTTGCAT-TGGGAAAC-GTGAAGCAAAAGCCATCCATTGA
* * *
3003688 CAAGAAAAGTCCATTTATAGTTACTCATGGCTTCCAAAGCCTA
127 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTA
* * *
3003731 GTTACTTC-TTTTAAATGCTTTCATAATCTTATAAATGATTTTAAATTGAATTTGTTTTCAATTT
1 GTTAC-TCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTT-TTTTC-ATTT
* * * * * * *
3003795 TTGTTAAAACAGAACATAAATTGTTGTTTGCATCAGGAAAATAGTGAAGCAAAAGCCGTCCATTG
63 TTGTTAAAACAGATCATAATTTGATGTTTGCAT-TGGGAAA-CGTGAAGCAAAAGCCATCCATTG
* * * *
3003860 ACAAAAAACAATCCATTTATAGTCACTCATGGCTTTGAAAGCCTA
126 ACAAGAAA-AGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTA
*
3003905 GATACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAAATTGAA-TTTTTTCATTTTT
1 GTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTT-AAATTGAATTTTTTTCATTTTT
* * * * * ** *
3003969 GGCTAAAACAAATCATAATTTCATGTTTGCATGGGGAAACGTTAAGCAAAAGTTATCCATTGAGA
65 -GTTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCAAAAGCCATCCATTGACA
* * * * * * *
3004034 AGGAAAGTCAATTTACAATCACTCATGCCTTTGAAGGCCTT
129 AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTA
* * * *
3004075 TTTACTCACTTTAAGT-GTTTTATAA-CTTTATAAAT-AGTTTTGAATTGAATTTTTCTTCACTC
1 GTTACTCACTTTAAATGGTTTTATAATC-TTATAAATGA-TTTTAAATTGAATTTTT-TTCA-TT
*** * *
3004137 TTTGTTAAACACAGATCATAATTTGATGTTTGCATCAAGTAACGTGAAGCAAAAGCCATCGATTG
62 TTTGTTAAA-ACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCAAAAGCCATCCATTG
* * *
3004202 ACAAGAAATGTCCATTTATAGTCACTCATACCTTCAAAAGCCTA
126 ACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTA
* * * * * *
3004246 GTTACTCACTTTATATAGTATTATAATCTTATAAATGATTTGAAATTGAATTCTTTTACATATTT
1 GTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATT-TTTTTCATTTTT
* * ** * *
3004311 GATTAAAACAGATCATAATTTGATGTTTGTATTGGGAAATGTTTAGCAAAAGCCATCCATTAATA
65 G-TTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCAAAAGCCATCCATTGACA
* *
3004376 AGAAAAGT-CATTTTATAGTTACTAATGCCTTCGAAAGCCTA
129 AGAAAAGTCCA-TTTATAGTCACTCATGCCTTCGAAAGCCTA
* * * * * * * * *
3004417 GTTAGTCATTTTGAATGGTTTTATAATCCTATGAATAATTTTGAA-TCAGATTTTTCTCAATTTT
1 GTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGA-ATTTTTTTC-ATTTT
* * ** * * * * ** *
3004481 TGTTAAAATAGAGCATAAACTGTTGTTTGCCTCGAGAAACGTGAAGTGAAAGCCATCCATTAACA
64 TGTTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCAAAAGCCATCCATTGACA
* * * *
3004546 AGAAAAGTCCATTTATTGTCACTTATGCCTTCAAAAGCTTA
129 AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTA
* * * * * * *
3004587 ATTGCTCACTCTAAATTGTTTTATTATCTTATAAATGATTTTAGATTGAATTTTTTTCAGTTTTG
1 GTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTCA-TTTTT
* * ** * ** * * *
3004652 GTTAAAACAAATTATAATTTGATGTTTTAATCGAAAAACGTGAAGCAAAAGCCATCTATGGATAA
65 GTTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCAAAAGCCATCCATTG--AC
* ** * * *
3004717 AAAAAAAACCCATTTATAGTCACTCATACCTTTGAAAGCCTT
128 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTA
* * * * * ** *
3004759 GTTACTCGCTTTACATAGTTTTATAATCTTATAAATGATTTCAAGTCAAAATGTTTTTCATTTTT
1 GTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAAT-TGAATTTTTTTCATTTTT
* * ** * * * *
3004824 GGTTAAAATAGATCATAATTAGATGTTTGCA-T-CAAAAAGCTTATAACGAAAGCCATCCATTGA
65 -GTTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACG-TGA-AGCAAAAGCCATCCATTGA
* * * * *
3004887 CAAGAAAAGTCTATTTATACTCACTCATGCCTTCAAAACCCTT
127 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTA
* ** * * * *
3004930 GTTACACGTTTTAAGTGGTTTTATAA-CTTTTAAATGATTTTAAATTAAAGTTTTTT-ATTTTTG
1 GTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTCATTTTT-
* * * * * * *
3004993 GTTGAAATAGATCACAATCTGATGTTTCCATTAGGAAACGTGAAGCGAAAGCCATCCATTGACAA
65 GTTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCAAAAGCCATCCATTGACAA
* * * * *
3005058 GAAAAGTCCATTTATAGTCATTCATACTTTTGAGAGCCTA
130 GAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTA
* * * * *
3005098 ATTACTCACTTTACATAGTTTTAGAATCTTATAAATGATTTT-AAGTGAAATTTTTTTTCATTTT
1 GTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTG-AA-TTTTTTTCATTTT
* ** * *
3005162 TGGTTAAAACAGATCATAATTAGATGTTTGCA-TCAGAAA-GCTTATAGCAAAAGGCATCCATTG
64 T-GTTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACG-TGA-AGCAAAAGCCATCCATTG
* * * * * *
3005225 ACAAGAAAAATCCGTTTAT-GCTCACTCATACCTTCAAAACCCTT
126 ACAAGAAAAGTCCATTTATAG-TCACTCATGCCTTCGAAAGCCTA
* * * *
3005269 GTTACTCATTTTAAGTGG-TTTATAA-CTTTTTAAATGATTTTAAATT-AAATTTTTTCATTTTT
1 GTTACTCACTTTAAATGGTTTTATAATC-TTATAAATGATTTTAAATTGAATTTTTTTCATTTTT
* * * * * * *
3005331 GTTTAAACAGATTATAATTTCA-GTTTGCATTAGGAAACATGAAGCGAAAGCCATCCATTGAAAA
65 GTTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCAAAAGCCATCCATTGACAA
* * * *
3005395 GGAACGTCCATTTATAGCCACTCATGCCTTTC-AAAACCTA
130 GAAAAGTCCATTTATAGTCACTCATGCC-TTCGAAAGCCTA
* * *
3005435 GTTACTCACTTAAAATGGTTTTATAATCTTATAAATGATTTTGAATTGAAATTTTTTCATTTTTG
1 GTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTCATTTTT-
* * * * * *
3005500 GTTAAAACTA-AACATAATTTGATGTTTGCATTAGGAAACGTGAAACAACAGGCATCCATTGATA
65 GTTAAAAC-AGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCAAAAGCCATCCATTGACA
* * * * *
3005564 AGAAATGTCCATTCATAGTCACTCATTCCTTTGAAAGGCTA
129 AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTA
* * *
3005605 GTTACTCACTTTAAAAGGTTTTATAATTTTATAAATGATTTTAAATTGAGTTTTTTTTTTCATTT
1 GTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGA---ATTTTTTTCATTT
* * * * * * *
3005670 TGGTTGAAACTGATCCTAATTTGATGCTTGCATTGGGAAACATGAAGCGGAAA-CCATCCATTGA
63 TTGTTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGC-AAAAGCCATCCATTGA
* * * *
3005734 TAAGAAAACTCCATTTATAGTCACTCATGCTTTCAAAAGCCTA
127 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTA
* ** * * *
3005777 GTTACTCGCTTCGAATGGTTTTATAATCCTATAAATAATTTTAAA-TCAATTTTTTTCATTTTTG
1 GTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTCATTTTT-
* * * * * *
3005841 GTTAAAATAGATCATAATTTGTTGTTTACATTAGGAAATGTGAAGTC-AAAGCAATCCATTGACA
65 GTTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAG-CAAAAGCCATCCATTGACA
* * * * * * * *
3005905 AGAAATGTGCTTTTTTAGTCATTCATGCCTTCAAAAACCTT
129 AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTA
* * * * ** *
3005946 GTGACT--CTTTAAATGGTTTCATAATATGATAAATGATTTTAAATCAAATTTCATTTCATTTTT
1 GTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTT-TTTTCATTTTT
* ** * * * *** * * * *
3006009 GGTTAAAATAGATCATAATCAGATTTTTACAATCACAACCATGGAA-CGAAAGCAATCCATTTG-
65 -GTTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGT-GAAGCAAAAGCCATCCA-TTGA
* * * * * *
3006072 CAAGAAAAGTCCACTTGTAGTTACTCATGCTTTTGAAAACCTA
127 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTA
* * ** *
3006115 GTTTCTTACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAATTTTTTTCCTTTTTT
1 GTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTT-CATTTTT
* * * ** * *
3006180 GTTAAAACAGATGATAATTGGATGTTTGCATCGGGAAAAATGAAG-ATAAAGCAATCCGTTGACA
65 GTTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCA-AAAGCCATCCATTGACA
* * *
3006244 AGAAAAGTCTAGTTATAGTCACTCATGCCTTCAAAAGCCTA
129 AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTA
** * * *
3006285 GTTACTCGTTTTAAGTGATTTTATAA-CTTTATAAATGATTTTAGATTGAATTTTTTTCATTTTT
1 GTTACTCACTTTAAATGGTTTTATAATC-TTATAAATGATTTTAAATTGAATTTTTTTCATTTTT
* * ** * *
3006349 GTTTAAATC-GATCATAATTTGGTGTTTGCATTGGGGAAACGTGAAGTGAAAGCCATCTATTGAT
65 G-TTAAAACAGATCATAATTTGATGTTTGCATT-GGGAAACGTGAAGCAAAAGCCATCCATTGAC
* *
3006413 AAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTT
128 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTA
* * * ***
3006455 GTTACTTATTTTAAATGGTTTTATAATCTTATAACTGATTTTAAATTCCTTTTTTTTTTCATTTT
1 GTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATT--GAATTTTTTTCA-TTT
* * * * * * * *
3006520 TTGTTAAAACAGAACATAAATTGTTG-TTGCATTGGGAAACATGAAGCGAAAGCCATCGATTCAT
63 TTGTTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCAAAAGCCATCCATTGAC
* * *
3006584 AAGAAAAGTCTATTTATAGCCACTCATACCTTCGAAAGCCTA
128 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTA
* * * * *
3006626 GTTACTCACTTTAAATGGTCTTATAATCTTATAAATAACTTTGAATTGAATTTTTTTTTTATTTT
1 GTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAA--TTTTTTTCATTTT
* * * * * * * *
3006691 TGGTTGAAACAGATCTTAATTTGTTGTTTGCATAGGGTAACGTGAAGCAAAGGCAATCCATTGGC
64 T-GTTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCAAAAGCCATCCATTGAC
* * * ** * *
3006756 AAGAAATGTTCATTTATAGTCACTTATAACTTTGAAAGCCCA
128 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTA
* * * * *
3006798 GTTACTCACTTCAAATGGTTTTATCATCTTATAAAAGATTTTAAATCGAATATTTTTACATTTTT
1 GTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAAT-TTTTTTCATTTTT
* * * *
3006863 -TTAAAACAGACCATAATTTGATGTTTGCATCGGGAAACGTGAAGCAAAAGTCATTCATTTG-CA
65 GTTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCAAAAGCCATCCA-TTGACA
** * *
3006926 AGGGAAGTTCATTTATAGTTACTCATGCCTTC-AGAAGCCTA
129 AGAAAAGTCCATTTATAGTCACTCATGCCTTCGA-AAGCCTA
*** * * * * ***
3006967 GTTACTGGGTTTACATGGTTTTATAATCTTACAAATGATTTTAAACTAAAAACTTTTCATTTTTT
1 GTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTCA-TTTTT
*
3007032 GTTAAAACAGATCATAATTGGATGTTTGCATT
65 GTTAAAACAGATCATAATTTGATGTTTGCATT
3007064 AGAAAGTGCT
Statistics
Matches: 2969, Mismatches: 606, Indels: 200
0.79 0.16 0.05
Matches are distributed among these distances:
166 96 0.03
167 96 0.03
168 171 0.06
169 409 0.14
170 694 0.23
171 608 0.20
172 624 0.21
173 193 0.07
174 70 0.02
175 8 0.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (169 bp):
GTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTCATTTTTG
TTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCAAAAGCCATCCATTGACAAG
AAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTA
Done.