Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41236440
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2030548 characters in sequence are not A, C, G, or T
File 14 of 106
Found at i:6649470 original size:27 final size:27
Alignment explanation
Indices: 6649447--6649637 Score: 148
Period size: 27 Copynumber: 7.0 Consensus size: 27
6649437 ATTTTTTTAT
*
6649447 TATAATGTGTAATAACTAAATTTTCAA
1 TATAATGTGTAACAACTAAATTTTCAA
* ** * * *
6649474 CATAACATGTTATAACTAAATTTTTAA
1 TATAATGTGTAACAACTAAATTTTCAA
*
6649501 TATAATGTGTAACAACTACATTTTTCAA
1 TATAATGTGTAACAACTA-AATTTTCAA
* * * * * * *
6649529 CATGACGTGAAATAATTAAATTTTCAG
1 TATAATGTGTAACAACTAAATTTTCAA
* *
6649556 TATAGTATGTAACAACTAAACTTTTCAA
1 TATAATGTGTAACAACTAAA-TTTTCAA
*
6649584 TATAATGTGTAACAATTAAATTTTCAA
1 TATAATGTGTAACAACTAAATTTTCAA
* * ** * *
6649611 CATGACATGTAATAACTACATTTTCAA
1 TATAATGTGTAACAACTAAATTTTCAA
6649638 CGTTATTTTT
Statistics
Matches: 123, Mismatches: 39, Indels: 4
0.74 0.23 0.02
Matches are distributed among these distances:
27 81 0.66
28 42 0.34
ACGTcount: A:0.42, C:0.12, G:0.08, T:0.38
Consensus pattern (27 bp):
TATAATGTGTAACAACTAAATTTTCAA
Found at i:6649549 original size:55 final size:54
Alignment explanation
Indices: 6649447--6649638 Score: 186
Period size: 55 Copynumber: 3.5 Consensus size: 54
6649437 ATTTTTTTAT
* * * * * * *
6649447 TATAATGTGTAATAACTAAATTTTCAACATAACATGTTATAACTAAATTTTTAA
1 TATAATATGTAACAACTACATTTTCAACATAACGTGTAATAATTAAATTTTCAA
* * * *
6649501 TATAATGTGTAACAACTACATTTTTCAACATGACGTGAAATAATTAAATTTTCAG
1 TATAATATGTAACAACTACA-TTTTCAACATAACGTGTAATAATTAAATTTTCAA
* * * * *
6649556 TATAGTATGTAACAACTAAACTTTTCAATATAATGTGTAACAATTAAATTTTCAA
1 TATAATATGTAACAACTACA-TTTTCAACATAACGTGTAATAATTAAATTTTCAA
* * * *
6649611 CATGACATGTAATAACTACATTTTCAAC
1 TATAATATGTAACAACTACATTTTCAAC
6649639 GTTATTTTTT
Statistics
Matches: 111, Mismatches: 26, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
54 25 0.23
55 86 0.77
ACGTcount: A:0.42, C:0.12, G:0.08, T:0.38
Consensus pattern (54 bp):
TATAATATGTAACAACTACATTTTCAACATAACGTGTAATAATTAAATTTTCAA
Found at i:6652368 original size:4 final size:4
Alignment explanation
Indices: 6652359--6652407 Score: 71
Period size: 4 Copynumber: 12.2 Consensus size: 4
6652349 GAATTCTATG
* * *
6652359 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATGT ATGT ATAT GTAT ATAT
1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT
6652407 A
1 A
6652408 CTCAGCCAAC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
4 41 1.00
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.49
Consensus pattern (4 bp):
ATAT
Found at i:6652370 original size:6 final size:6
Alignment explanation
Indices: 6652359--6652407 Score: 71
Period size: 6 Copynumber: 8.2 Consensus size: 6
6652349 GAATTCTATG
* * *
6652359 ATATAT ATATAT ATATAT ATATAT ATATAT GTATGT ATATGT ATATAT
1 ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT
6652407 A
1 A
6652408 CTCAGCCAAC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.49
Consensus pattern (6 bp):
ATATAT
Found at i:6652374 original size:10 final size:10
Alignment explanation
Indices: 6652359--6652407 Score: 71
Period size: 10 Copynumber: 4.9 Consensus size: 10
6652349 GAATTCTATG
6652359 ATATATATAT
1 ATATATATAT
6652369 ATATATATAT
1 ATATATATAT
6652379 ATATATATAT
1 ATATATATAT
* *
6652389 GTATGTATAT
1 ATATATATAT
*
6652399 GTATATATA
1 ATATATATA
6652408 CTCAGCCAAC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 36 1.00
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.49
Consensus pattern (10 bp):
ATATATATAT
Found at i:6657124 original size:15 final size:15
Alignment explanation
Indices: 6657100--6657167 Score: 52
Period size: 15 Copynumber: 4.5 Consensus size: 15
6657090 TTAATGTTGA
*
6657100 ATGTTATAATTTATGT
1 ATGTT-TAATTTATTT
6657116 ATGTTTAATATT-TTT
1 ATGTTTAAT-TTATTT
* *
6657131 TTGTTTAAGTTGA-TT
1 ATGTTTAA-TTTATTT
6657146 -TGTATTAATTTATTT
1 ATGT-TTAATTTATTT
6657161 ATGTTTA
1 ATGTTTA
6657168 TATTATTTGT
Statistics
Matches: 42, Mismatches: 4, Indels: 13
0.71 0.07 0.22
Matches are distributed among these distances:
14 6 0.14
15 25 0.60
16 11 0.26
ACGTcount: A:0.26, C:0.00, G:0.12, T:0.62
Consensus pattern (15 bp):
ATGTTTAATTTATTT
Found at i:6657143 original size:44 final size:44
Alignment explanation
Indices: 6657086--6657171 Score: 106
Period size: 45 Copynumber: 2.0 Consensus size: 44
6657076 AATATATATA
6657086 TTTGTTAATGTTGAATGT-TA-TAATTTATGTATGTTTAATATTTT
1 TTTGTTAATGTTG-ATGTGTATTAATTTATGTATGTTT-ATATTTT
* *
6657130 TTTGTTTAA-GTTGATTTGTATTAATTTATTTATGTTTATATT
1 TTTG-TTAATGTTGATGTGTATTAATTTATGTATGTTTATATT
6657172 ATTTGTATAT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
43 3 0.08
44 15 0.41
45 19 0.51
ACGTcount: A:0.26, C:0.00, G:0.13, T:0.62
Consensus pattern (44 bp):
TTTGTTAATGTTGATGTGTATTAATTTATGTATGTTTATATTTT
Found at i:6658697 original size:12 final size:12
Alignment explanation
Indices: 6658667--6658700 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
6658657 TATTCTAAAC
* *
6658667 TTAAAAATTAAA
1 TTAAAATTTTAA
6658679 TTAAAATTTTAA
1 TTAAAATTTTAA
6658691 TTAAAATTTT
1 TTAAAATTTT
6658701 TTTATATTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (12 bp):
TTAAAATTTTAA
Found at i:6659038 original size:2 final size:2
Alignment explanation
Indices: 6659031--6659056 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
6659021 CAAAATACTG
6659031 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
6659057 ATACAAGATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:6667656 original size:23 final size:21
Alignment explanation
Indices: 6667630--6667672 Score: 50
Period size: 23 Copynumber: 2.0 Consensus size: 21
6667620 TTTAATTGAG
*
6667630 TTTAGATTTAAGATAATCATTTT
1 TTTAGATTAAAG-TAA-CATTTT
*
6667653 TTTATATTAAAGTAACATTT
1 TTTAGATTAAAGTAACATTT
6667673 GGTATAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 5 0.28
22 3 0.17
23 10 0.56
ACGTcount: A:0.37, C:0.05, G:0.07, T:0.51
Consensus pattern (21 bp):
TTTAGATTAAAGTAACATTTT
Found at i:6668082 original size:15 final size:15
Alignment explanation
Indices: 6668062--6668093 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
6668052 TAAAGTTATA
6668062 ATTAAAATAAAAAAT
1 ATTAAAATAAAAAAT
*
6668077 ATTAAAATAAAATAT
1 ATTAAAATAAAAAAT
6668092 AT
1 AT
6668094 AATATAAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
ATTAAAATAAAAAAT
Found at i:6668202 original size:33 final size:32
Alignment explanation
Indices: 6668168--6668254 Score: 93
Period size: 33 Copynumber: 2.6 Consensus size: 32
6668158 AAAAGAAATT
6668168 AAAATAAAATATATAAATATAAAAAATTATATTAA
1 AAAATAAAA-ATA-AAATATAAAAAATTATATT-A
* * **
6668203 AAAATAAAAATAAAATATATAAGATTATAACA
1 AAAATAAAAATAAAATATAAAAAATTATATTA
*
6668235 AGAAATGAAAATAAAATATA
1 A-AAATAAAAATAAAATATA
6668255 TGACATTAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
32 2 0.04
33 32 0.70
34 3 0.07
35 9 0.20
ACGTcount: A:0.69, C:0.01, G:0.03, T:0.26
Consensus pattern (32 bp):
AAAATAAAAATAAAATATAAAAAATTATATTA
Found at i:6668229 original size:28 final size:28
Alignment explanation
Indices: 6668198--6668266 Score: 66
Period size: 33 Copynumber: 2.3 Consensus size: 28
6668188 AAAAAATTAT
*
6668198 ATTAAAAAATAAAAATAAAATATATAAG
1 ATTAAAAAATAAAAATAAAATATATAAC
* *
6668226 ATTATAACAAGAAATGAAAATAAAATATATGAC
1 A-T-T-A-AA-AAATAAAAATAAAATATATAAC
6668259 ATTAAAAA
1 ATTAAAAA
6668267 TATATTTAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 10
0.72 0.07 0.22
Matches are distributed among these distances:
28 3 0.09
29 3 0.09
30 2 0.06
31 2 0.06
32 3 0.09
33 20 0.61
ACGTcount: A:0.67, C:0.03, G:0.06, T:0.25
Consensus pattern (28 bp):
ATTAAAAAATAAAAATAAAATATATAAC
Found at i:6668498 original size:15 final size:15
Alignment explanation
Indices: 6668474--6668514 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
6668464 TTTTTTCTAC
**
6668474 AATCACATTATTTAT
1 AATCACATTACCTAT
*
6668489 AATTACATTACCTAT
1 AATCACATTACCTAT
6668504 AATCACATTAC
1 AATCACATTAC
6668515 ATTATAAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.41, C:0.20, G:0.00, T:0.39
Consensus pattern (15 bp):
AATCACATTACCTAT
Found at i:6675961 original size:20 final size:20
Alignment explanation
Indices: 6675938--6675977 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
6675928 GTAATCACCT
6675938 GATTAGATTGCTAATGAGTG
1 GATTAGATTGCTAATGAGTG
*
6675958 GATTAGATTGTTAATGAGTG
1 GATTAGATTGCTAATGAGTG
6675978 AATGGCACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.30, C:0.03, G:0.30, T:0.38
Consensus pattern (20 bp):
GATTAGATTGCTAATGAGTG
Found at i:6691080 original size:140 final size:137
Alignment explanation
Indices: 6690720--6691174 Score: 581
Period size: 137 Copynumber: 3.3 Consensus size: 137
6690710 TCACATTTAG
* ** * *
6690720 AAATTCCCAAGAAACCATCTCTTATAGCATTCTTAAGATTTTATCATCAAAGCATTTTTATTTAA
1 AAATTCTCAAGAAGTCATCTCTTATAGCATTCTTGAGATTTTATCATCAAAGAATTTTTATTTAA
*
6690785 TCGCATTCTATAATTTTATCAATTTATTTACTTTATTTAATTATTTTTTA-TAATATTTATGTAA
66 TTGCATTCTAT-ATTTTATCAATTTATTTACTTTATTTAATTATTTTTTATTAATATTTATGTAA
* *
6690849 ATCCTGTG
130 ATCCTTTC
* * * * *
6690857 AAATTCTCAAGGAGTCGTCTCTTACAGCATTCTTGAGATTTTATCATCAAAAAATATTTATTTAA
1 AAATTCTCAAGAAGTCATCTCTTATAGCATTCTTGAGATTTTATCATCAAAGAATTTTTATTTAA
* *
6690922 TTGCATTTTATATTTTTATCAATTTATTTAATTTATTTAATTATTTCTTTTATTAATATTTATGT
66 TTGCATTCTATA-TTTTATCAATTTATTTACTTTATTTAATTA-TT-TTTTATTAATATTTATGT
*
6690987 GAATCCTTTC
128 AAATCCTTTC
* * * * * * *
6690997 AAATTTTTAATAAATCATCTCTTGTAGCATTTTTGAGATTTTATTCATCTAAGAATTTTTATTTA
1 AAATTCTCAAGAAGTCATCTCTTATAGCATTCTTGAGATTTTA-TCATCAAAGAATTTTTATTTA
** *
6691062 ATTGGGGTTCTATA-TTTATCAATTTGTTTACTTTATTTAATTATTTTTTATTAATATTTATGTA
65 ATT-GCATTCTATATTTTATCAATTTATTTACTTTATTTAATTATTTTTTATTAATATTTATGTA
*
6691126 AATCCTTTT
129 AATCCTTTC
* *
6691135 AAATTCTCAAGAAGTCATATCTGATAGCATTCTTGAGATT
1 AAATTCTCAAGAAGTCATCTCTTATAGCATTCTTGAGATT
6691175 CCATCATCGA
Statistics
Matches: 269, Mismatches: 43, Indels: 11
0.83 0.13 0.03
Matches are distributed among these distances:
136 1 0.00
137 93 0.35
138 60 0.22
139 7 0.03
140 80 0.30
141 21 0.08
142 7 0.03
ACGTcount: A:0.31, C:0.11, G:0.08, T:0.50
Consensus pattern (137 bp):
AAATTCTCAAGAAGTCATCTCTTATAGCATTCTTGAGATTTTATCATCAAAGAATTTTTATTTAA
TTGCATTCTATATTTTATCAATTTATTTACTTTATTTAATTATTTTTTATTAATATTTATGTAAA
TCCTTTC
Found at i:6691369 original size:18 final size:18
Alignment explanation
Indices: 6691348--6691382 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
6691338 AAATTGGTTT
6691348 AGAATAA-GATAACTAAAA
1 AGAATAATGATAA-TAAAA
6691366 AGAATAATGATAATAAA
1 AGAATAATGATAATAAA
6691383 GATATAGGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.66, C:0.03, G:0.11, T:0.20
Consensus pattern (18 bp):
AGAATAATGATAATAAAA
Found at i:6694471 original size:22 final size:22
Alignment explanation
Indices: 6694422--6694489 Score: 70
Period size: 22 Copynumber: 3.1 Consensus size: 22
6694412 AGTAATATTG
*
6694422 TATTAAT-AATTATTAATGTT-G
1 TATTAATAAATTATTAAT-TTAT
*
6694443 TAGTAATAAATTATTAATTTAT
1 TATTAATAAATTATTAATTTAT
6694465 TATTAATAATATTATTAGA-TTAT
1 TATTAATAA-ATTATTA-ATTTAT
6694488 TA
1 TA
6694490 ATTTATTCAT
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
21 8 0.20
22 18 0.45
23 13 0.32
24 1 0.03
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (22 bp):
TATTAATAAATTATTAATTTAT
Found at i:6694994 original size:24 final size:23
Alignment explanation
Indices: 6694956--6695039 Score: 64
Period size: 24 Copynumber: 3.7 Consensus size: 23
6694946 ACACGTTATG
* *
6694956 ATGTTACATGCCATGTACAAAAAT
1 ATGTTACACGTCATGTA-AAAAAT
** *
6694980 ATGTTACACGTCATG-ATTAGAT
1 ATGTTACACGTCATGTAAAAAAT
* *
6695002 -TGTTACACGTCATGTGTAAAAAC
1 ATGTTACACGTCATGT-AAAAAAT
*
6695025 ATGTGACACGTCATG
1 ATGTTACACGTCATG
6695040 GTTAGATTGT
Statistics
Matches: 46, Mismatches: 11, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
21 14 0.30
22 3 0.07
23 3 0.07
24 26 0.57
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.31
Consensus pattern (23 bp):
ATGTTACACGTCATGTAAAAAAT
Found at i:6695061 original size:45 final size:45
Alignment explanation
Indices: 6694957--6695077 Score: 170
Period size: 45 Copynumber: 2.7 Consensus size: 45
6694947 CACGTTATGA
* * *
6694957 TGTTACATGCCATGTACAAAAATATGTTACACGTCATGATTAGAT
1 TGTTACATGCCATGTATAAAAACATGTGACACGTCATGATTAGAT
* * * *
6695002 TGTTACACGTCATGTGTAAAAACATGTGACACGTCATGGTTAGAT
1 TGTTACATGCCATGTATAAAAACATGTGACACGTCATGATTAGAT
*
6695047 TGTTACATACCATGTATAAAAACATGTGACA
1 TGTTACATGCCATGTATAAAAACATGTGACA
6695078 TGCCATGTAC
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 65 1.00
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31
Consensus pattern (45 bp):
TGTTACATGCCATGTATAAAAACATGTGACACGTCATGATTAGAT
Found at i:6695127 original size:24 final size:24
Alignment explanation
Indices: 6695056--6695129 Score: 94
Period size: 24 Copynumber: 3.1 Consensus size: 24
6695046 TTGTTACATA
* *
6695056 CCATGTATAAAAACATGTGACATG
1 CCATGTACAAAAACATGTGACACG
* *
6695080 CCATGTACAGAAACATGTGGCACG
1 CCATGTACAAAAACATGTGACACG
* *
6695104 CTATGTACAAAAACATATGACACG
1 CCATGTACAAAAACATGTGACACG
6695128 CC
1 CC
6695130 GTGATTAGGT
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.39, C:0.23, G:0.18, T:0.20
Consensus pattern (24 bp):
CCATGTACAAAAACATGTGACACG
Found at i:6695178 original size:29 final size:28
Alignment explanation
Indices: 6695138--6695287 Score: 91
Period size: 29 Copynumber: 5.3 Consensus size: 28
6695128 CCGTGATTAG
6695138 GTTGTTACACGTCATGTTGAAAAAATATT
1 GTTGTTACACGTCATGTT-AAAAAATATT
6695167 GTTGTTACACGTCATG-TACAAAAATA--
1 GTTGTTACACGTCATGTTA-AAAAATATT
*
6695193 --TATTACACGTCATGGTT-AAAAA-A-T
1 GTTGTTACACGTCAT-GTTAAAAAATATT
* **
6695217 GTCGTTACACACCATGTTGAAAAAAAATATATT
1 GTTGTTACACGTCATGTT----AAAAA-ATATT
* *
6695250 GCTGTTACACGCCATGTTAAAAAAATATT
1 GTTGTTACACGTCATGTT-AAAAAATATT
* *
6695279 ATTATTACA
1 GTTGTTACA
6695288 TACCATATTT
Statistics
Matches: 96, Mismatches: 11, Indels: 28
0.71 0.08 0.21
Matches are distributed among these distances:
23 1 0.01
24 17 0.18
25 4 0.04
26 10 0.10
27 1 0.01
28 8 0.08
29 27 0.28
30 10 0.10
31 1 0.01
32 1 0.01
33 16 0.17
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.33
Consensus pattern (28 bp):
GTTGTTACACGTCATGTTAAAAAATATT
Found at i:6695596 original size:97 final size:95
Alignment explanation
Indices: 6695488--6695680 Score: 368
Period size: 97 Copynumber: 2.0 Consensus size: 95
6695478 AAAATAAAAA
6695488 AAAATTCCTTTGAAAACCTAGGTTGATAAATTTTAATTTTTGAGTTGAAAATCTAGGTCCCGAAT
1 AAAATTCCTTTGAAAACCTAGGTTGATAAATTTTAATTTTTGAGTTGAAAATCTAGGTCCCGAAT
6695553 TGATTCAATTAAAAACTATTTCAAAACATCT
66 TGATTCAATTAAAAACTATTTC-AAACATCT
6695584 ANAAATTCCTTTGAAAACCTAGGTTGATAAATTTTAATTTTTGAGTTGAAAATCTAGGTCCCGAA
1 A-AAATTCCTTTGAAAACCTAGGTTGATAAATTTTAATTTTTGAGTTGAAAATCTAGGTCCCGAA
6695649 TTGATTCAATTAAAAACTATTTCAAACATCT
65 TTGATTCAATTAAAAACTATTTCAAACATCT
6695680 A
1 A
6695681 TGATCATTTC
Statistics
Matches: 96, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
96 10 0.10
97 86 0.90
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.36
Consensus pattern (95 bp):
AAAATTCCTTTGAAAACCTAGGTTGATAAATTTTAATTTTTGAGTTGAAAATCTAGGTCCCGAAT
TGATTCAATTAAAAACTATTTCAAACATCT
Found at i:6697877 original size:13 final size:13
Alignment explanation
Indices: 6697861--6697901 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
6697851 ATAAAATTTT
6697861 ATTAGTAAA-AAAA
1 ATTA-TAAACAAAA
6697874 ATTATAAACAAAA
1 ATTATAAACAAAA
*
6697887 ATCATAAACAAAA
1 ATTATAAACAAAA
6697900 AT
1 AT
6697902 CACACCAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
12 4 0.15
13 22 0.85
ACGTcount: A:0.68, C:0.07, G:0.02, T:0.22
Consensus pattern (13 bp):
ATTATAAACAAAA
Found at i:6697902 original size:13 final size:13
Alignment explanation
Indices: 6697866--6697903 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
6697856 ATTTTATTAG
*
6697866 TAAA-AAAAATTA
1 TAAACAAAAATCA
6697878 TAAACAAAAATCA
1 TAAACAAAAATCA
6697891 TAAACAAAAATCA
1 TAAACAAAAATCA
6697904 CACCAAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 4 0.17
13 20 0.83
ACGTcount: A:0.71, C:0.11, G:0.00, T:0.18
Consensus pattern (13 bp):
TAAACAAAAATCA
Found at i:6698417 original size:69 final size:69
Alignment explanation
Indices: 6698337--6698602 Score: 372
Period size: 69 Copynumber: 3.9 Consensus size: 69
6698327 TGGTTGATTT
* * * * *
6698337 TTAGGGGGGATAAAGCTTAGGTATTTACCGCCGGTAAGAGTGGGTAAAGCTTGGGTTATTTGCCG
1 TTAGGAGGGATAAAGCTTGGGTATTTACCGCCGATTAGAGTGGGTAAAGCTTGGGTTAGTTGCCG
* *
6698402 CCGA
66 TCGG
* * *
6698406 TTAGGAGGGATAAAGCTTGGGTATTTGCTGCCGGTTAGAGTGGGTAAAGCTTGGGTTAGTTGCCG
1 TTAGGAGGGATAAAGCTTGGGTATTTACCGCCGATTAGAGTGGGTAAAGCTTGGGTTAGTTGCCG
6698471 TCGG
66 TCGG
*
6698475 TTATGG-GGGATAAAGCTTGGGTATTTGCCGCCGATTAGAGTGGGTAAAGCTTGGGTTAGTTGCC
1 TTA-GGAGGGATAAAGCTTGGGTATTTACCGCCGATTAGAGTGGGTAAAGCTTGGGTTAGTTGCC
*
6698539 GTTGG
65 GTCGG
* * * *
6698544 TTAGGAGGGATAAAACTGGGGTATTTACTGTCGATTAGAGTGGGTAAAGCTTGGGTTAG
1 TTAGGAGGGATAAAGCTTGGGTATTTACCGCCGATTAGAGTGGGTAAAGCTTGGGTTAG
6698603 CTGTCGCCGA
Statistics
Matches: 179, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
68 2 0.01
69 175 0.98
70 2 0.01
ACGTcount: A:0.22, C:0.11, G:0.37, T:0.30
Consensus pattern (69 bp):
TTAGGAGGGATAAAGCTTGGGTATTTACCGCCGATTAGAGTGGGTAAAGCTTGGGTTAGTTGCCG
TCGG
Found at i:6698454 original size:34 final size:34
Alignment explanation
Indices: 6698347--6698599 Score: 244
Period size: 34 Copynumber: 7.4 Consensus size: 34
6698337 TTAGGGGGGA
* * *
6698347 TAAAGCTTAGGTATTTACCGCCGGTAAGAGTGGG
1 TAAAGCTTGGGTATTTGCCGCCGGTTAGAGTGGG
* *
6698381 TAAAGCTTGGGTTATTTGCCGCCGATTAGGAG-GGA
1 TAAAGCTTGGG-TATTTGCCGCCGGTTA-GAGTGGG
*
6698416 TAAAGCTTGGGTATTTGCTGCCGGTTAGAGTGGG
1 TAAAGCTTGGGTATTTGCCGCCGGTTAGAGTGGG
* *
6698450 TAAAGCTTGGGTTAGTTGCCGTCGGTTATG-G-GGG
1 TAAAGCTTGGG-TATTTGCCGCCGGTTA-GAGTGGG
*
6698484 ATAAAGCTTGGGTATTTGCCGCCGATTAGAGTGGG
1 -TAAAGCTTGGGTATTTGCCGCCGGTTAGAGTGGG
* ** *
6698519 TAAAGCTTGGGTTAGTTGCCGTTGGTTAGGAG-GGA
1 TAAAGCTTGGG-TATTTGCCGCCGGTTA-GAGTGGG
* * * * * *
6698554 TAAAACTGGGGTATTTACTGTCGATTAGAGTGGG
1 TAAAGCTTGGGTATTTGCCGCCGGTTAGAGTGGG
6698588 TAAAGCTTGGGT
1 TAAAGCTTGGGT
6698600 TAGCTGTCGC
Statistics
Matches: 179, Mismatches: 29, Indels: 22
0.78 0.13 0.10
Matches are distributed among these distances:
33 7 0.04
34 88 0.49
35 77 0.43
36 7 0.04
ACGTcount: A:0.22, C:0.12, G:0.36, T:0.30
Consensus pattern (34 bp):
TAAAGCTTGGGTATTTGCCGCCGGTTAGAGTGGG
Found at i:6699706 original size:13 final size:13
Alignment explanation
Indices: 6699688--6699727 Score: 50
Period size: 11 Copynumber: 3.3 Consensus size: 13
6699678 AAAAATTAGT
6699688 TAAAAATAATAAA
1 TAAAAATAATAAA
*
6699701 TAAAAAAAAT-AA
1 TAAAAATAATAAA
6699713 -AAAAATAA-AAA
1 TAAAAATAATAAA
6699724 TAAA
1 TAAA
6699728 TGCTATATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
11 9 0.39
12 5 0.22
13 9 0.39
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.17
Consensus pattern (13 bp):
TAAAAATAATAAA
Found at i:6713879 original size:2 final size:2
Alignment explanation
Indices: 6713872--6713907 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
6713862 TCTTTTCCTT
6713872 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6713908 AAAACTAATG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:6715298 original size:8 final size:8
Alignment explanation
Indices: 6715271--6715332 Score: 56
Period size: 8 Copynumber: 7.6 Consensus size: 8
6715261 GTCAAAAAAA
6715271 TTAATAATT
1 TTAATAA-T
6715280 TTAATTAAT
1 TTAA-TAAT
6715289 TTAATAAT
1 TTAATAAT
*
6715297 TTTATATAT
1 TTAATA-AT
*
6715306 TTAATTAT
1 TTAATAAT
*
6715314 ATAA-AA-
1 TTAATAAT
6715320 TTAATAAT
1 TTAATAAT
6715328 TTAAT
1 TTAAT
6715333 TATCAATAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 9
0.74 0.10 0.16
Matches are distributed among these distances:
6 3 0.07
7 3 0.07
8 19 0.44
9 15 0.35
10 3 0.07
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (8 bp):
TTAATAAT
Found at i:6715327 original size:17 final size:17
Alignment explanation
Indices: 6715267--6715329 Score: 60
Period size: 18 Copynumber: 3.8 Consensus size: 17
6715257 ATGGGTCAAA
6715267 AAAATTAATAATTTTAAT
1 AAAATTAATAATTTT-AT
* *
6715285 TAATTTAATAATTTTAT
1 AAAATTAATAATTTTAT
* *
6715302 -ATATT--TAATTATAT
1 AAAATTAATAATTTTAT
6715316 AAAATTAATAATTT
1 AAAATTAATAATTT
6715330 AATTATCAAT
Statistics
Matches: 35, Mismatches: 7, Indels: 7
0.71 0.14 0.14
Matches are distributed among these distances:
14 8 0.23
15 4 0.11
16 3 0.09
17 7 0.20
18 13 0.37
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
AAAATTAATAATTTTAT
Found at i:6724047 original size:30 final size:29
Alignment explanation
Indices: 6724012--6724111 Score: 137
Period size: 30 Copynumber: 3.3 Consensus size: 29
6724002 TATTTGATCG
*
6724012 AATTTTTATATTTTAATTTTAAATTTAATA
1 AATTTTTATATTTT-ATTTTAAATTAAATA
* *
6724042 AATTTTTATATATTTATTTTAAGTTGAATA
1 AATTTTTATAT-TTTATTTTAAATTAAATA
6724072 AATTTTTATATTTTTATTTTAAATTAAATA
1 AATTTTTATA-TTTTATTTTAAATTAAATA
*
6724102 AAATTTTATA
1 AATTTTTATA
6724112 ACTAATGATT
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
30 59 0.94
31 4 0.06
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (29 bp):
AATTTTTATATTTTATTTTAAATTAAATA
Found at i:6737317 original size:14 final size:14
Alignment explanation
Indices: 6737272--6737347 Score: 66
Period size: 14 Copynumber: 5.3 Consensus size: 14
6737262 GGTGTATAAA
6737272 AATAGGTACAAGAG
1 AATAGGTACAAGAG
*
6737286 AAGAAGTTGTAC--GAG
1 AA-TAG--GTACAAGAG
6737301 AATAGGTACAAGAG
1 AATAGGTACAAGAG
* * *
6737315 AATAAGATGCACGAG
1 AAT-AGGTACAAGAG
6737330 AATAGGTACAAGAG
1 AATAGGTACAAGAG
6737344 AATA
1 AATA
6737348 AAGTAGGAGG
Statistics
Matches: 48, Mismatches: 8, Indels: 12
0.71 0.12 0.18
Matches are distributed among these distances:
12 4 0.08
14 22 0.46
15 18 0.38
17 4 0.08
ACGTcount: A:0.49, C:0.08, G:0.28, T:0.16
Consensus pattern (14 bp):
AATAGGTACAAGAG
Found at i:6737346 original size:29 final size:29
Alignment explanation
Indices: 6737272--6737348 Score: 127
Period size: 29 Copynumber: 2.7 Consensus size: 29
6737262 GGTGTATAAA
* * *
6737272 AATAGGTACAAGAGAAGAAGTTGTACGAG
1 AATAGGTACAAGAGAATAAGATGCACGAG
6737301 AATAGGTACAAGAGAATAAGATGCACGAG
1 AATAGGTACAAGAGAATAAGATGCACGAG
6737330 AATAGGTACAAGAGAATAA
1 AATAGGTACAAGAGAATAA
6737349 AGTAGGAGGG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 45 1.00
ACGTcount: A:0.49, C:0.08, G:0.27, T:0.16
Consensus pattern (29 bp):
AATAGGTACAAGAGAATAAGATGCACGAG
Found at i:6737624 original size:35 final size:35
Alignment explanation
Indices: 6737541--6737625 Score: 109
Period size: 35 Copynumber: 2.4 Consensus size: 35
6737531 ATATTAGTAA
* *
6737541 TTCCACATGAAGTAGTGCTCTACTTATTCTAGTTG
1 TTCCTCATGAAGTAGTGCTCTACTTATTCTAGGTG
* * *
6737576 TT-CTGCTTTAAGTAGTGCTCTACTTGTTCTAGGTG
1 TTCCT-CATGAAGTAGTGCTCTACTTATTCTAGGTG
6737611 TTCCTCATGAAGTAG
1 TTCCTCATGAAGTAG
6737626 CGTTTCACTT
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
34 1 0.02
35 38 0.93
36 2 0.05
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (35 bp):
TTCCTCATGAAGTAGTGCTCTACTTATTCTAGGTG
Found at i:6737636 original size:35 final size:35
Alignment explanation
Indices: 6737597--6737677 Score: 92
Period size: 35 Copynumber: 2.3 Consensus size: 35
6737587 GTAGTGCTCT
* * **
6737597 ACTTGTTCTAGGTGTTCCT-CATGAAGTAGCGTTTC
1 ACTTGTTCTAAGTATT-CTGCATGAAGTAGCACTTC
* *
6737632 ACTTGTTCTAATTATTCTGCGTGAAGTAGCACTTC
1 ACTTGTTCTAAGTATTCTGCATGAAGTAGCACTTC
6737667 ACTTGTTCTAA
1 ACTTGTTCTAA
6737678 TTGTTCTCTG
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
34 2 0.05
35 37 0.95
ACGTcount: A:0.21, C:0.20, G:0.19, T:0.41
Consensus pattern (35 bp):
ACTTGTTCTAAGTATTCTGCATGAAGTAGCACTTC
Found at i:6737678 original size:35 final size:35
Alignment explanation
Indices: 6737618--6737684 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 35
6737608 GTGTTCCTCA
**
6737618 TGAAGTAGCGTTTCACTTGTTCTAATTATTCTGCG
1 TGAAGTAGCACTTCACTTGTTCTAATTATTCTGCG
*
6737653 TGAAGTAGCACTTCACTTGTTCTAATTGTTCT
1 TGAAGTAGCACTTCACTTGTTCTAATTATTCT
6737685 CTGTACAACA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.21, C:0.18, G:0.18, T:0.43
Consensus pattern (35 bp):
TGAAGTAGCACTTCACTTGTTCTAATTATTCTGCG
Found at i:6743166 original size:4 final size:4
Alignment explanation
Indices: 6743157--6743182 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
6743147 AGAATATGAC
6743157 TGTT TGTT TGTT TGTT TGTT TGTT TG
1 TGTT TGTT TGTT TGTT TGTT TGTT TG
6743183 ATGTTTCCTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.27, T:0.73
Consensus pattern (4 bp):
TGTT
Found at i:6744844 original size:2 final size:2
Alignment explanation
Indices: 6744837--6744897 Score: 106
Period size: 2 Copynumber: 31.0 Consensus size: 2
6744827 GTGAAGAAAC
*
6744837 AT AT AT AT AT AT AT AT AT AN A- AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6744878 AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT
6744898 GACAGAAAAA
Statistics
Matches: 57, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
1 1 0.02
2 56 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:6749648 original size:74 final size:73
Alignment explanation
Indices: 6749527--6749673 Score: 285
Period size: 74 Copynumber: 2.0 Consensus size: 73
6749517 CTACGTTTTC
6749527 CTCAATTGTGAAAACTCTCATATAGAAAATAGTTAAAATGTGACTTATATAGTTAGTTTAAAATA
1 CTCAATTGTGAAAACTCTCATATAGAAAATAGTTAAAATGTGACTTATATAGTTAGTTTAAAATA
6749592 ACTTCAAT
66 ACTTCAAT
6749600 NCTCAATTGTGAAAACTCTCATATAGAAAATAGTTAAAATGTGACTTATATAGTTAGTTTAAAAT
1 -CTCAATTGTGAAAACTCTCATATAGAAAATAGTTAAAATGTGACTTATATAGTTAGTTTAAAAT
6749665 AACTTCAAT
65 AACTTCAAT
6749674 TTTACAATTA
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 73 1.00
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.35
Consensus pattern (73 bp):
CTCAATTGTGAAAACTCTCATATAGAAAATAGTTAAAATGTGACTTATATAGTTAGTTTAAAATA
ACTTCAAT
Found at i:6750264 original size:12 final size:12
Alignment explanation
Indices: 6750247--6750275 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
6750237 AGAGTTATGA
6750247 AATCTTTTTCAT
1 AATCTTTTTCAT
6750259 AATCTTTTTCAT
1 AATCTTTTTCAT
6750271 AATCT
1 AATCT
6750276 CTATGTCGCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.28, C:0.17, G:0.00, T:0.55
Consensus pattern (12 bp):
AATCTTTTTCAT
Found at i:6781392 original size:44 final size:44
Alignment explanation
Indices: 6781324--6781417 Score: 161
Period size: 44 Copynumber: 2.1 Consensus size: 44
6781314 TGGATTTGGC
*
6781324 CAAAGTGGAAGAGTAAATTAACACTTGGAAAAATTTTACAAGAGT
1 CAAA-TGGAAGAGTAAATTAACACTTAGAAAAATTTTACAAGAGT
*
6781369 CAAATGGAAGAGTAAATTAACACTTAGAAAAATTTTATAAGAGT
1 CAAATGGAAGAGTAAATTAACACTTAGAAAAATTTTACAAGAGT
6781413 CAAAT
1 CAAAT
6781418 TGAATTTCTT
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
44 43 0.91
45 4 0.09
ACGTcount: A:0.49, C:0.09, G:0.17, T:0.26
Consensus pattern (44 bp):
CAAATGGAAGAGTAAATTAACACTTAGAAAAATTTTACAAGAGT
Found at i:6783009 original size:2 final size:2
Alignment explanation
Indices: 6783002--6783048 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
6782992 ATATGAGTTA
6783002 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6783044 AT AT A
1 AT AT A
6783049 GTTAAATGTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:6783968 original size:25 final size:25
Alignment explanation
Indices: 6783918--6783968 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
6783908 TGGGTATTGA
* * *
6783918 TATATAACTGAAATGTGGTGGTCAT
1 TATATAACTGAAATGAGGTCGACAT
*
6783943 TATATAATTGAAATGAGGTCGACAT
1 TATATAACTGAAATGAGGTCGACAT
6783968 T
1 T
6783969 TGACAAAAAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.35
Consensus pattern (25 bp):
TATATAACTGAAATGAGGTCGACAT
Found at i:6800648 original size:67 final size:67
Alignment explanation
Indices: 6800540--6800674 Score: 270
Period size: 67 Copynumber: 2.0 Consensus size: 67
6800530 TATGTGACAT
6800540 GTAAATTAGATATCGTGAAAATATGTTTGAGTGTGAAACTCAAATCTAGCCCCTCAAAGATATAA
1 GTAAATTAGATATCGTGAAAATATGTTTGAGTGTGAAACTCAAATCTAGCCCCTCAAAGATATAA
6800605 AA
66 AA
6800607 GTAAATTAGATATCGTGAAAATATGTTTGAGTGTGAAACTCAAATCTAGCCCCTCAAAGATATAA
1 GTAAATTAGATATCGTGAAAATATGTTTGAGTGTGAAACTCAAATCTAGCCCCTCAAAGATATAA
6800672 AA
66 AA
6800674 G
1 G
6800675 AATGAAAGAG
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 68 1.00
ACGTcount: A:0.41, C:0.13, G:0.17, T:0.28
Consensus pattern (67 bp):
GTAAATTAGATATCGTGAAAATATGTTTGAGTGTGAAACTCAAATCTAGCCCCTCAAAGATATAA
AA
Found at i:6803028 original size:31 final size:30
Alignment explanation
Indices: 6802990--6803050 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 30
6802980 TCCATAACAA
* *
6802990 TAATTTATTCATTCATTATTATTTAAATTAT
1 TAATTTATTAATGCATTATTA-TTAAATTAT
6803021 TAATTTATTAATGCATTATTATTAAATTAT
1 TAATTTATTAATGCATTATTATTAAATTAT
6803051 AGATAATAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
30 9 0.32
31 19 0.68
ACGTcount: A:0.38, C:0.05, G:0.02, T:0.56
Consensus pattern (30 bp):
TAATTTATTAATGCATTATTATTAAATTAT
Found at i:6803120 original size:22 final size:22
Alignment explanation
Indices: 6803092--6803141 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
6803082 ATAAAAAATT
*
6803092 TAAATTATTAATATTTCAATAA
1 TAAATTATTAATATTGCAATAA
*
6803114 TAAATTATTAATATTGCTATAA
1 TAAATTATTAATATTGCAATAA
6803136 TAAATT
1 TAAATT
6803142 CTATTTTTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (22 bp):
TAAATTATTAATATTGCAATAA
Found at i:6810174 original size:21 final size:22
Alignment explanation
Indices: 6810148--6810192 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
6810138 CATTATCTGA
*
6810148 TTTAGACATTGCGTGATT-GGT
1 TTTAGACATTACGTGATTAGGT
*
6810169 TTTAGAGATTACGTGATTAGGT
1 TTTAGACATTACGTGATTAGGT
6810191 TT
1 TT
6810193 GTATGCATTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 16 0.76
22 5 0.24
ACGTcount: A:0.22, C:0.07, G:0.27, T:0.44
Consensus pattern (22 bp):
TTTAGACATTACGTGATTAGGT
Found at i:6814568 original size:66 final size:66
Alignment explanation
Indices: 6814462--6814592 Score: 244
Period size: 66 Copynumber: 2.0 Consensus size: 66
6814452 ATTTGGATGT
*
6814462 CACTTACGTTATTTTTAATTGAATGCAGTTCATGATGATGGAAATGCATCATTTGAAGTGAGAAG
1 CACTTACGTTATTTTTAATTGAATGCAGTTCATGACGATGGAAATGCATCATTTGAAGTGAGAAG
6814527 C
66 C
*
6814528 CACTTACGTTATTTTTAATTGAATGTAGTTCATGACGATGGAAATGCATCATTTGAAGTGAGAAG
1 CACTTACGTTATTTTTAATTGAATGCAGTTCATGACGATGGAAATGCATCATTTGAAGTGAGAAG
6814593 AGGCCATGTC
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.35
Consensus pattern (66 bp):
CACTTACGTTATTTTTAATTGAATGCAGTTCATGACGATGGAAATGCATCATTTGAAGTGAGAAG
C
Found at i:6815190 original size:17 final size:18
Alignment explanation
Indices: 6815158--6815199 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
6815148 TAATTCTTGC
*
6815158 TTTTATTTCTTTTCTT-T
1 TTTTTTTTCTTTTCTTAT
6815175 TTTCTTTTTC-TTTCTTAT
1 TTT-TTTTTCTTTTCTTAT
6815193 TTTTTTT
1 TTTTTTT
6815200 ATTTTTCTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 13 0.59
18 9 0.41
ACGTcount: A:0.05, C:0.12, G:0.00, T:0.83
Consensus pattern (18 bp):
TTTTTTTTCTTTTCTTAT
Found at i:6822229 original size:19 final size:20
Alignment explanation
Indices: 6822184--6822229 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
6822174 CTTGCCAATA
*
6822184 ACTTC-TTTGGAGAAGCTTT
1 ACTTCATTTGGAGAAGCTGT
*
6822203 ACTACATTTGGAGAA-CTGT
1 ACTTCATTTGGAGAAGCTGT
6822222 ACTTCATT
1 ACTTCATT
6822230 GCATTATGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
19 14 0.61
20 9 0.39
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.39
Consensus pattern (20 bp):
ACTTCATTTGGAGAAGCTGT
Found at i:6827657 original size:16 final size:17
Alignment explanation
Indices: 6827615--6827663 Score: 50
Period size: 16 Copynumber: 3.0 Consensus size: 17
6827605 CATAAGAGTG
*
6827615 TATATTTAT-GTATACA
1 TATATTGATAGTATACA
*
6827631 TAT-TTGTTAGTAT-CA
1 TATATTGATAGTATACA
6827646 TATATTGATAGTAATACA
1 TATATTGATAGT-ATACA
6827664 ATTATGATGG
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
15 8 0.31
16 14 0.54
17 2 0.08
18 2 0.08
ACGTcount: A:0.37, C:0.06, G:0.10, T:0.47
Consensus pattern (17 bp):
TATATTGATAGTATACA
Found at i:6828159 original size:41 final size:40
Alignment explanation
Indices: 6828102--6828186 Score: 152
Period size: 41 Copynumber: 2.1 Consensus size: 40
6828092 CCGCCCTCCC
*
6828102 TTTTTTAAGTATTTTGGGGATGGTTGAAGCAATAATATTT
1 TTTTTTAAGTACTTTGGGGATGGTTGAAGCAATAATATTT
6828142 NTTTTTTAAGTACTTTGGGGATGGTTGAAGCAATAATATTT
1 -TTTTTTAAGTACTTTGGGGATGGTTGAAGCAATAATATTT
6828183 TTTT
1 TTTT
6828187 AAAAAAAAAG
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
40 4 0.09
41 39 0.91
ACGTcount: A:0.26, C:0.04, G:0.21, T:0.48
Consensus pattern (40 bp):
TTTTTTAAGTACTTTGGGGATGGTTGAAGCAATAATATTT
Found at i:6833160 original size:19 final size:20
Alignment explanation
Indices: 6833136--6833197 Score: 76
Period size: 19 Copynumber: 3.1 Consensus size: 20
6833126 ATTTTAAATT
6833136 TTTTTAATTTATA-TTA-TTA
1 TTTTT-ATTTATATTTATTTA
6833155 TTTTTATTTATATTTATTTA
1 TTTTTATTTATATTTATTTA
*
6833175 TTTTT-TTTATTTTTATTCTA
1 TTTTTATTTATATTTATT-TA
6833195 TTT
1 TTT
6833198 GTTCATATGT
Statistics
Matches: 39, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
18 7 0.18
19 19 0.49
20 13 0.33
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.76
Consensus pattern (20 bp):
TTTTTATTTATATTTATTTA
Found at i:6833175 original size:23 final size:23
Alignment explanation
Indices: 6833134--6833197 Score: 78
Period size: 23 Copynumber: 2.8 Consensus size: 23
6833124 TAATTTTAAA
6833134 TTTT-TTTA-ATTTATATTATTAT
1 TTTTATTTATATTTAT-TTATTAT
*
6833156 TTTTATTTATATTTATTTATTTT
1 TTTTATTTATATTTATTTATTAT
*
6833179 TTTTATTTTTATTCTATTT
1 TTTTATTTATATT-TATTT
6833198 GTTCATATGT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.11
23 22 0.59
24 11 0.30
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.77
Consensus pattern (23 bp):
TTTTATTTATATTTATTTATTAT
Found at i:6835075 original size:15 final size:15
Alignment explanation
Indices: 6835055--6835090 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
6835045 ACGTAGTTTT
6835055 AGAAAAAAAAAGAAA
1 AGAAAAAAAAAGAAA
* *
6835070 AGAAAAAAAGAGATA
1 AGAAAAAAAAAGAAA
6835085 AGAAAA
1 AGAAAA
6835091 GAAACAAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.81, C:0.00, G:0.17, T:0.03
Consensus pattern (15 bp):
AGAAAAAAAAAGAAA
Found at i:6853021 original size:7 final size:7
Alignment explanation
Indices: 6852988--6853018 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
6852978 GATGTTATGA
6852988 TTTCAAC
1 TTTCAAC
6852995 TTTCAAC
1 TTTCAAC
6853002 TTTCAAC
1 TTTCAAC
*
6853009 TTTGAAC
1 TTTCAAC
6853016 TTT
1 TTT
6853019 GAAGGAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.03, T:0.48
Consensus pattern (7 bp):
TTTCAAC
Found at i:6853429 original size:30 final size:29
Alignment explanation
Indices: 6853373--6853436 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
6853363 ATTTAAAAAA
*
6853373 ATATTTTTTTATTAAATTCAATTAAATTT
1 ATATTTTTTTATTAAATTCAAATAAATTT
*
6853402 ATATTTTTTTATTTTGAA-TCAAATAAATTT
1 ATATTTTTTTA--TTAAATTCAAATAAATTT
*
6853432 TTATT
1 ATATT
6853437 ATTAATAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
29 11 0.37
30 15 0.50
31 4 0.13
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (29 bp):
ATATTTTTTTATTAAATTCAAATAAATTT
Found at i:6855518 original size:16 final size:17
Alignment explanation
Indices: 6855497--6855529 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
6855487 AATAACCCTC
6855497 TAATAATT-TTTTTATT
1 TAATAATTATTTTTATT
6855513 TAATAATTATTTTTATT
1 TAATAATTATTTTTATT
6855530 CCTCAAACCG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
TAATAATTATTTTTATT
Found at i:6855733 original size:41 final size:38
Alignment explanation
Indices: 6855669--6855756 Score: 124
Period size: 41 Copynumber: 2.3 Consensus size: 38
6855659 ACCTACTAAC
6855669 TTTTAATA-TAAATCTAAGCCTATCATAACATATTATA
1 TTTTAATAGTAAATCTAAGCCTATCATAACATATTATA
6855706 TTTTAATAGTCAAATCTAATAGCCTATCATAACATATTATA
1 TTTTAATAGT-AAATCT-A-AGCCTATCATAACATATTATA
* *
6855747 TCTCAATAGT
1 TTTTAATAGT
6855757 TCAACCCAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
37 8 0.18
38 1 0.02
39 6 0.13
40 1 0.02
41 29 0.64
ACGTcount: A:0.41, C:0.15, G:0.05, T:0.40
Consensus pattern (38 bp):
TTTTAATAGTAAATCTAAGCCTATCATAACATATTATA
Found at i:6858585 original size:33 final size:34
Alignment explanation
Indices: 6858531--6858601 Score: 90
Period size: 33 Copynumber: 2.1 Consensus size: 34
6858521 TTGTTGGTGC
*
6858531 AAATAGAGTTTAGATGAAATTCAAAGAA-TGTAA
1 AAATAGAGTTTAGATGAAATTCAAAGAACTGAAA
* * * *
6858564 AAATGGAGTTTAGTTGGAATTCAAGGAACTGAAA
1 AAATAGAGTTTAGATGAAATTCAAAGAACTGAAA
6858598 AAAT
1 AAAT
6858602 TGACTTTAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
33 24 0.75
34 8 0.25
ACGTcount: A:0.48, C:0.04, G:0.21, T:0.27
Consensus pattern (34 bp):
AAATAGAGTTTAGATGAAATTCAAAGAACTGAAA
Found at i:6871689 original size:3 final size:3
Alignment explanation
Indices: 6871676--6871709 Score: 59
Period size: 3 Copynumber: 11.0 Consensus size: 3
6871666 AACATTTTAG
6871676 ATT ATTT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT
6871710 TATTTTTAGT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 27 0.90
4 3 0.10
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
ATT
Found at i:6871724 original size:11 final size:10
Alignment explanation
Indices: 6871677--6871727 Score: 52
Period size: 9 Copynumber: 5.2 Consensus size: 10
6871667 ACATTTTAGA
*
6871677 TTATTTATTA
1 TTATTTATTT
*
6871687 TTA-TTATTA
1 TTATTTATTT
*
6871696 TTA-TTATTA
1 TTATTTATTT
6871705 TTATTTATTT
1 TTATTTATTT
6871715 TTAGTTTATTT
1 TTA-TTTATTT
6871726 TT
1 TT
6871728 TAGCCTGCCC
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
9 18 0.47
10 11 0.29
11 9 0.24
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (10 bp):
TTATTTATTT
Found at i:6875172 original size:16 final size:16
Alignment explanation
Indices: 6875151--6875181 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6875141 CAACTTTTAA
*
6875151 TAAAATATTAGTATTT
1 TAAAATATTAATATTT
6875167 TAAAATATTAATATT
1 TAAAATATTAATATT
6875182 AAATTATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (16 bp):
TAAAATATTAATATTT
Found at i:6875272 original size:16 final size:15
Alignment explanation
Indices: 6875251--6875281 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
6875241 TTATTCCTAT
6875251 TTAAAAATAAAATAAA
1 TTAAAAAT-AAATAAA
6875267 TTAAAAATAAATAAA
1 TTAAAAATAAATAAA
6875282 CATAATATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (15 bp):
TTAAAAATAAATAAA
Found at i:6875688 original size:15 final size:15
Alignment explanation
Indices: 6875649--6875693 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
6875639 TTAAATTAAA
* *
6875649 TAAAATATTAATATTT
1 TAAAATATAAATA-AT
6875665 TAAAATATAAATAAT
1 TAAAATATAAATAAT
*
6875680 TAAATTATAAATAA
1 TAAAATATAAATAA
6875694 ATATTAATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 14 0.54
16 12 0.46
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
TAAAATATAAATAAT
Found at i:6875782 original size:21 final size:21
Alignment explanation
Indices: 6875731--6875782 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 21
6875721 AATATTTTAA
6875731 AAATAAAATAAAATAAAAATT
1 AAATAAAATAAAATAAAAATT
* * **
6875752 -AATCATAATAACATTTAAATT
1 AAAT-AAAATAAAATAAAAATT
6875773 AAATAAAATA
1 AAATAAAATA
6875783 TTAATATTTA
Statistics
Matches: 24, Mismatches: 5, Indels: 4
0.73 0.15 0.12
Matches are distributed among these distances:
20 3 0.12
21 18 0.75
22 3 0.12
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (21 bp):
AAATAAAATAAAATAAAAATT
Found at i:6877552 original size:30 final size:28
Alignment explanation
Indices: 6877473--6877558 Score: 93
Period size: 28 Copynumber: 3.0 Consensus size: 28
6877463 TTAAGAAATT
*
6877473 TTAAATAAATTTTTATATTTTTATTGTG
1 TTAAATAAATTTTTATATTTTTATTTTG
* *
6877501 CTCAATCAAA-TTTTATATTTTTATTTTG
1 TTAAAT-AAATTTTTATATTTTTATTTTG
*
6877529 AATTAAATAAATTTTTATGTTTTTTATTTT
1 --TTAAATAAATTTTTAT-ATTTTTATTTT
6877559 AAACAAAAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
28 21 0.45
29 6 0.13
30 10 0.21
31 10 0.21
ACGTcount: A:0.31, C:0.03, G:0.05, T:0.60
Consensus pattern (28 bp):
TTAAATAAATTTTTATATTTTTATTTTG
Found at i:6878739 original size:22 final size:21
Alignment explanation
Indices: 6878707--6878838 Score: 78
Period size: 22 Copynumber: 6.3 Consensus size: 21
6878697 TAATTTATAA
*
6878707 TTAATTAAAATATTAATAATT
1 TTAATTTAAATATTAATAATT
*
6878728 TATAATTTAAATATCAAT-ATT
1 T-TAATTTAAATATTAATAATT
* *
6878749 TTAATAT-AAT-TTAATTACTT
1 TTAATTTAAATATTAA-TAATT
* * * *
6878769 ATATTTTAATTAATAAT-ATT
1 TTAATTTAAATATTAATAATT
6878789 TT-ATTTATAAT-TTAATATTATT
1 TTAATTTA-AATATTAATA--ATT
* *
6878811 TTGATTAAAATATTAATAATT
1 TTAATTTAAATATTAATAATT
*
6878832 TTTATTT
1 TTAATTT
6878839 TTATTTATAC
Statistics
Matches: 82, Mismatches: 18, Indels: 22
0.67 0.15 0.18
Matches are distributed among these distances:
18 3 0.04
19 12 0.15
20 16 0.20
21 16 0.20
22 25 0.30
23 10 0.12
ACGTcount: A:0.43, C:0.02, G:0.01, T:0.55
Consensus pattern (21 bp):
TTAATTTAAATATTAATAATT
Found at i:6878771 original size:40 final size:41
Alignment explanation
Indices: 6878727--6878804 Score: 106
Period size: 40 Copynumber: 1.9 Consensus size: 41
6878717 TATTAATAAT
6878727 TTATAATTTAAAT-ATCAATATTTTA-ATATAATTTAATTAC
1 TTATAATTTAAATAAT-AATATTTTATATATAATTTAATTAC
* * *
6878767 TTATATTTTAATTAATAATATTTTATTTATAATTTAAT
1 TTATAATTTAAATAATAATATTTTATATATAATTTAAT
6878805 ATTATTTTGA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
40 20 0.61
41 13 0.39
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (41 bp):
TTATAATTTAAATAATAATATTTTATATATAATTTAATTAC
Found at i:6878787 original size:15 final size:14
Alignment explanation
Indices: 6878749--6878791 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
6878739 TATCAATATT
*
6878749 TTAATATAATTTAA
1 TTAATATATTTTAA
*
6878763 TTACTTATATTTTAA
1 TTA-ATATATTTTAA
6878778 TTAATAATATTTTA
1 TTAAT-ATATTTTA
6878792 TTTATAATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
14 4 0.17
15 20 0.83
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (14 bp):
TTAATATATTTTAA
Found at i:6878917 original size:23 final size:23
Alignment explanation
Indices: 6878865--6878942 Score: 72
Period size: 23 Copynumber: 3.4 Consensus size: 23
6878855 AAACTTAAAT
*
6878865 ATATTAATCA-TTTAATAA-ATAAA
1 ATATTAAT-AGTTTAATAATAT-TA
*
6878888 ACATTAATAGTTTAA-AATATTA
1 ATATTAATAGTTTAATAATATTA
* *
6878910 ATATTTAATATTTTAATCATATTA
1 ATA-TTAATAGTTTAATAATATTA
6878934 ATATTAATA
1 ATATTAATA
6878943 ATGTTTCAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
22 6 0.13
23 31 0.67
24 9 0.20
ACGTcount: A:0.50, C:0.04, G:0.01, T:0.45
Consensus pattern (23 bp):
ATATTAATAGTTTAATAATATTA
Found at i:6878957 original size:26 final size:24
Alignment explanation
Indices: 6878904--6878977 Score: 71
Period size: 24 Copynumber: 2.9 Consensus size: 24
6878894 ATAGTTTAAA
6878904 ATATTAATATTTAAT-ATTTTAATC
1 ATATTAATA-TTAATAATTTTAATC
*
6878928 ATATTAATATTAATAATGTTTCAATT
1 ATATTAATATTAATAAT-TTT-AATC
6878954 ATATATAAAATATTAAT-ATTTTAA
1 ATAT-T--AATATTAATAATTTTAA
6878978 ATTTTACAAA
Statistics
Matches: 43, Mismatches: 1, Indels: 10
0.80 0.02 0.19
Matches are distributed among these distances:
23 5 0.12
24 11 0.26
25 3 0.07
26 9 0.21
27 4 0.09
28 2 0.05
29 9 0.21
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.50
Consensus pattern (24 bp):
ATATTAATATTAATAATTTTAATC
Found at i:6883303 original size:27 final size:27
Alignment explanation
Indices: 6883269--6883320 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
6883259 TTAAAATTTT
*
6883269 AATTATAAAGTGTTAATATTTTAAATA
1 AATTATAAAGTCTTAATATTTTAAATA
**
6883296 AATTATAACTTCTTAATATTTTAAA
1 AATTATAAAGTCTTAATATTTTAAA
6883321 AATAAAAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (27 bp):
AATTATAAAGTCTTAATATTTTAAATA
Found at i:6884115 original size:2 final size:2
Alignment explanation
Indices: 6884108--6884148 Score: 55
Period size: 2 Copynumber: 20.5 Consensus size: 2
6884098 TGCTTGTCGA
* * *
6884108 AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AC AT AC AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6884149 CATAAACACA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.41
Consensus pattern (2 bp):
AT
Found at i:6894732 original size:17 final size:17
Alignment explanation
Indices: 6894677--6894747 Score: 74
Period size: 16 Copynumber: 4.2 Consensus size: 17
6894667 GAAATGATAA
6894677 TTTTATTATTATTAA-T
1 TTTTATTATTATTAATT
* **
6894693 TTTAAAAATTATT-ATT
1 TTTTATTATTATTAATT
* *
6894709 TTATATTTTTATTAATT
1 TTTTATTATTATTAATT
6894726 TTTTATTATTATTATATT
1 TTTTATTATTATTA-ATT
6894744 TTTT
1 TTTT
6894748 TGAAAAAAGA
Statistics
Matches: 42, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
15 1 0.02
16 19 0.45
17 15 0.36
18 7 0.17
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
TTTTATTATTATTAATT
Found at i:6900772 original size:6 final size:7
Alignment explanation
Indices: 6900752--6900784 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
6900742 AAGGTCCCTA
6900752 CCTCCCC
1 CCTCCCC
6900759 CCTCCCC
1 CCTCCCC
6900766 CCTCCCC
1 CCTCCCC
6900773 CCTCCCC
1 CCTCCCC
6900780 CCTCC
1 CCTCC
6900785 GCCCATACAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.00, C:0.85, G:0.00, T:0.15
Consensus pattern (7 bp):
CCTCCCC
Found at i:6903464 original size:31 final size:34
Alignment explanation
Indices: 6903394--6903467 Score: 91
Period size: 34 Copynumber: 2.3 Consensus size: 34
6903384 AACTTGTAAT
* * *
6903394 ATTATTTAAGTTGTTCTTTAGATATTTGTTTTTA
1 ATTATTTAAGTTGATATTTAGAGATTTGTTTTTA
*
6903428 GTTATTTAAGTTGATATTT-GAGA-TT-TTTTTA
1 ATTATTTAAGTTGATATTTAGAGATTTGTTTTTA
6903459 ATTATTTAA
1 ATTATTTAA
6903468 ATTTAAATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
31 14 0.40
32 2 0.06
33 3 0.09
34 16 0.46
ACGTcount: A:0.27, C:0.01, G:0.12, T:0.59
Consensus pattern (34 bp):
ATTATTTAAGTTGATATTTAGAGATTTGTTTTTA
Found at i:6904158 original size:51 final size:51
Alignment explanation
Indices: 6904103--6904207 Score: 147
Period size: 51 Copynumber: 2.1 Consensus size: 51
6904093 CGATTTGGAA
*
6904103 TAAAAATCAATCACTTTTGAAATAAAAGTAAATTATAATATAAAATTTCAT
1 TAAAAATCAATCACTTTTGAAATAAAAGTAAATTATAACATAAAATTTCAT
* * * * * *
6904154 TAAAATTTAATCACTTTTGAAATAAAATTTAATTATAGCATAAAATTTTAT
1 TAAAAATCAATCACTTTTGAAATAAAAGTAAATTATAACATAAAATTTCAT
6904205 TAA
1 TAA
6904208 TAATTTAAAT
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.50, C:0.07, G:0.04, T:0.39
Consensus pattern (51 bp):
TAAAAATCAATCACTTTTGAAATAAAAGTAAATTATAACATAAAATTTCAT
Found at i:6904409 original size:11 final size:11
Alignment explanation
Indices: 6904372--6904415 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
6904362 TATAAAGGAG
6904372 AAAAAAGAAAA
1 AAAAAAGAAAA
*
6904383 AAGAAAGAACAAA
1 AAAAAAG-A-AAA
6904396 AAAAAAGAAAA
1 AAAAAAGAAAA
*
6904407 AAAGAAGAA
1 AAAAAAGAA
6904416 GAGAATTTAG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
11 17 0.61
12 2 0.07
13 9 0.32
ACGTcount: A:0.84, C:0.02, G:0.14, T:0.00
Consensus pattern (11 bp):
AAAAAAGAAAA
Found at i:6904464 original size:21 final size:23
Alignment explanation
Indices: 6904442--6904485 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
6904432 TATAAAGGAG
*
6904442 AAAAAA-AAAAGATAAAAAGAGA
1 AAAAAAGAAAAGAAAAAAAGAGA
6904464 AAAAAAGAAAAGAAAAAAAGAG
1 AAAAAAGAAAAGAAAAAAAGAG
6904486 TTTAGTATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (23 bp):
AAAAAAGAAAAGAAAAAAAGAGA
Found at i:6904494 original size:65 final size:67
Alignment explanation
Indices: 6904338--6904500 Score: 201
Period size: 70 Copynumber: 2.4 Consensus size: 67
6904328 ATGATTACAC
6904338 AAGAATAAAAAG-GTTTAGTATA-TGTATAAAGGAGAAAAAAGAAAAAAGAAAGAACAAAAAAAA
1 AAGAA-AAAAAGAGTTTAGTATACT-TATAAAGGAGAAAAAAGAAAAAAGAAAGAACAAAAAAAA
6904401 AGAA
64 AGAA
* * * *
6904405 AA-AAAGAAGAAGAGAATTTAGTATACTTATAAAGGAGAAAAAA-AAAAGATAAA-AAGAGAAAA
1 AAGAAA-AA-AAGAG--TTTAGTATACTTATAAAGGAGAAAAAAGAAAAAAGAAAGAACAAAAAA
6904467 AAAGAA
62 AAAGAA
6904473 AAGAAAAAAAGAGTTTAGTATACTTATA
1 AAGAAAAAAAGAGTTTAGTATACTTATA
6904501 GCATAATATA
Statistics
Matches: 85, Mismatches: 4, Indels: 16
0.81 0.04 0.15
Matches are distributed among these distances:
65 16 0.19
66 4 0.05
67 10 0.12
68 18 0.21
69 11 0.13
70 25 0.29
71 1 0.01
ACGTcount: A:0.65, C:0.02, G:0.17, T:0.16
Consensus pattern (67 bp):
AAGAAAAAAAGAGTTTAGTATACTTATAAAGGAGAAAAAAGAAAAAAGAAAGAACAAAAAAAAAG
AA
Found at i:6909435 original size:15 final size:14
Alignment explanation
Indices: 6909415--6909471 Score: 64
Period size: 12 Copynumber: 4.1 Consensus size: 14
6909405 AAAACATATG
6909415 ATTAAATAGAATAAA
1 ATTAAATA-AATAAA
*
6909430 ATTAAAATAAAAAAA
1 ATT-AAATAAATAAA
*
6909445 ATTATATAAATAAA
1 ATTAAATAAATAAA
6909459 A--AAATAAATAAA
1 ATTAAATAAATAAA
6909471 A
1 A
6909472 AATTTACGTT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
12 11 0.30
14 10 0.27
15 11 0.30
16 5 0.14
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.25
Consensus pattern (14 bp):
ATTAAATAAATAAA
Found at i:6914701 original size:87 final size:84
Alignment explanation
Indices: 6914541--6914747 Score: 204
Period size: 84 Copynumber: 2.5 Consensus size: 84
6914531 TAGAAATAGA
* * * * * ** *
6914541 AAATCATGTTTTTTGATATATTAAATAG---ATGCTTGTCTTTGAAATTAAAAAGATAGTTTTCC
1 AAATTATGTCTTTTGATATATTAAATAGAAAAT-CATATCTTTGAAAATAAAAAGATAGCCTTCA
*
6914603 ATTTTTTTCTAAAAAAAAAAAGT
65 ATTTTTCTCT---AAAAAAAAGT
* * *
6914626 AAGTTATGTCTTTTGATATATTAAATAGAAAATCATATCTTTGAAAATAGAAAGATGGCCTTCAA
1 AAATTATGTCTTTTGATATATTAAATAGAAAATCATATCTTTGAAAATAAAAAGATAGCCTTCAA
*
6914691 TTTTTCTCTAAAAAAATGT
66 TTTTTCTCTAAAAAAAAGT
* * * *
6914710 AAATTATATCTTTTGATAGATTAAATACAAATTCATAT
1 AAATTATGTCTTTTGATATATTAAATAGAAAATCATAT
6914748 TACTTTTTTA
Statistics
Matches: 101, Mismatches: 18, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
84 42 0.42
85 25 0.25
87 32 0.32
88 2 0.02
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (84 bp):
AAATTATGTCTTTTGATATATTAAATAGAAAATCATATCTTTGAAAATAAAAAGATAGCCTTCAA
TTTTTCTCTAAAAAAAAGT
Found at i:6916411 original size:31 final size:31
Alignment explanation
Indices: 6916373--6916466 Score: 98
Period size: 37 Copynumber: 2.8 Consensus size: 31
6916363 GGATAGTTGA
* *
6916373 GAGAGAGAGGGGAAGACGGGTGAGAGCGGTT
1 GAGAGAGAGGGGAAGACGGGTGAGAGCAGCT
*
6916404 GAGAGAGAAGGGAAGACGGATGGGTGAGAGAGCAGCT
1 GAGAGAGAGGGGAAGAC----GGGT--GAGAGCAGCT
*
6916441 GAGAGAGAGGGGAAGATGGGTGAGAG
1 GAGAGAGAGGGGAAGACGGGTGAGAG
6916467 AGAGCGGTTG
Statistics
Matches: 52, Mismatches: 5, Indels: 12
0.75 0.07 0.17
Matches are distributed among these distances:
31 21 0.40
33 4 0.08
35 4 0.08
37 23 0.44
ACGTcount: A:0.33, C:0.05, G:0.53, T:0.09
Consensus pattern (31 bp):
GAGAGAGAGGGGAAGACGGGTGAGAGCAGCT
Found at i:6916429 original size:35 final size:35
Alignment explanation
Indices: 6916390--6916483 Score: 107
Period size: 37 Copynumber: 2.6 Consensus size: 35
6916380 AGGGGAAGAC
6916390 GGGTGAGAGCGGTTGAGAGAGAAGGGAAGACGGAT
1 GGGTGAGAGCGGTTGAGAGAGAAGGGAAGACGGAT
* * * * *
6916425 GGGTGAGAGAGCAGCTGAGAGAGAGGGGAAGATGGGT
1 GGGT--GAGAGCGGTTGAGAGAGAAGGGAAGACGGAT
* *
6916462 GAGAGAGAGCGGTTGAGAGAGA
1 GGGTGAGAGCGGTTGAGAGAGA
6916484 TGAGGGGTAG
Statistics
Matches: 48, Mismatches: 9, Indels: 4
0.79 0.15 0.07
Matches are distributed among these distances:
35 20 0.42
37 28 0.58
ACGTcount: A:0.32, C:0.05, G:0.52, T:0.11
Consensus pattern (35 bp):
GGGTGAGAGCGGTTGAGAGAGAAGGGAAGACGGAT
Found at i:6916482 original size:37 final size:37
Alignment explanation
Indices: 6916368--6916490 Score: 113
Period size: 33 Copynumber: 3.5 Consensus size: 37
6916358 ACTATGGATA
*
6916368 GTTGAGAGAGAGAGGGGAAGACGGGT----GAGAGCG
1 GTTGAGAGAGAGAGGGGAAGATGGGTGAGAGAGAGCG
*
6916401 GTTGAGAGAGA-AGGGAAGACGGATGGGTGAGAGAGCAGC-
1 GTTGAGAGAGAGAGGG--GA-AGATGGGTGAGAGAG-AGCG
6916440 --T--GAGAGAGAGGGGAAGATGGGTGAGAGAGAGCG
1 GTTGAGAGAGAGAGGGGAAGATGGGTGAGAGAGAGCG
6916473 GTTGAGAGAGATGAGGGG
1 GTTGAGAGAGA-GAGGGG
6916491 TAGACGAGGG
Statistics
Matches: 72, Mismatches: 3, Indels: 25
0.72 0.03 0.25
Matches are distributed among these distances:
32 7 0.10
33 25 0.35
34 4 0.06
35 13 0.18
36 4 0.06
37 7 0.10
38 6 0.08
39 3 0.04
40 3 0.04
ACGTcount: A:0.32, C:0.05, G:0.53, T:0.11
Consensus pattern (37 bp):
GTTGAGAGAGAGAGGGGAAGATGGGTGAGAGAGAGCG
Found at i:6927956 original size:38 final size:40
Alignment explanation
Indices: 6927859--6927963 Score: 126
Period size: 38 Copynumber: 2.7 Consensus size: 40
6927849 CACACCCGGC
*
6927859 TCATGTACAT-CCCCCACATCGTGCACATAGCCGGCGCCA
1 TCATGTACATCCCCCCACATCGTGCACATAGCCAGCGCCA
* * * *
6927898 TCATGTGCATCCCCCCACATCGTGCACA-A-TCAGTGTCA
1 TCATGTACATCCCCCCACATCGTGCACATAGCCAGCGCCA
* *
6927936 TCGTGTACATCCCCCCACATCATGCACA
1 TCATGTACATCCCCCCACATCGTGCACA
6927964 CGGGCACTAT
Statistics
Matches: 57, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
38 30 0.53
39 10 0.18
40 17 0.30
ACGTcount: A:0.24, C:0.40, G:0.15, T:0.21
Consensus pattern (40 bp):
TCATGTACATCCCCCCACATCGTGCACATAGCCAGCGCCA
Found at i:6930767 original size:68 final size:68
Alignment explanation
Indices: 6930658--6930826 Score: 214
Period size: 68 Copynumber: 2.5 Consensus size: 68
6930648 TATATGAAAA
* * * * * * **
6930658 ATACATCATATACATAATCCCATGACATTCATCATATTTTCTCAATCATTTCATGTAGTATAT-G
1 ATACATGATATACACAATCTCATGGCATTTATCGTGCTTTCTCAATCATTTCATGTAGTATATAG
6930722 CAAT
66 -AAT
*
6930726 ATACATGATATACACAATCTTATGGCATTTATCGTGCTTTCTCAATCATTTCATGTAGTATATAG
1 ATACATGATATACACAATCTCATGGCATTTATCGTGCTTTCTCAATCATTTCATGTAGTATATAG
6930791 AAT
66 AAT
* * *
6930794 ATACATTATATATATAATCTCATGGCATTTATC
1 ATACATGATATACACAATCTCATGGCATTTATC
6930827 ATGCATATTA
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
68 86 0.99
69 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.08, T:0.40
Consensus pattern (68 bp):
ATACATGATATACACAATCTCATGGCATTTATCGTGCTTTCTCAATCATTTCATGTAGTATATAG
AAT
Found at i:6930922 original size:68 final size:67
Alignment explanation
Indices: 6930824--6930963 Score: 183
Period size: 68 Copynumber: 2.1 Consensus size: 67
6930814 CATGGCATTT
* *
6930824 ATCATGCATATTAATCACCTCATATTGTATATGGAA-TTTATATCATAGACACAATCTTATAGTA
1 ATCATGCATATTAATCACCTCATATGGTATAT-GAATTTTACATCATAGACACAATCTTATAGTA
6930888 TAC
65 TAC
* * * * *
6930891 ATCATGCATACTTAATCATCTCATATGGTATATGAATTTTACATTATATACATAATCTTATGGTA
1 ATCATGCATA-TTAATCACCTCATATGGTATATGAATTTTACATCATAGACACAATCTTATAGTA
*
6930956 TTC
65 TAC
6930959 ATCAT
1 ATCAT
6930964 ACCAAACATG
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
67 13 0.21
68 50 0.79
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.40
Consensus pattern (67 bp):
ATCATGCATATTAATCACCTCATATGGTATATGAATTTTACATCATAGACACAATCTTATAGTAT
AC
Found at i:6932092 original size:16 final size:16
Alignment explanation
Indices: 6932068--6932098 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6932058 TAAAAATATA
6932068 AAAAAAATCAAAATCC
1 AAAAAAATCAAAATCC
*
6932084 AAAAGAATCAAAATC
1 AAAAAAATCAAAATC
6932099 TAATTTTTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.68, C:0.16, G:0.03, T:0.13
Consensus pattern (16 bp):
AAAAAAATCAAAATCC
Found at i:6934633 original size:24 final size:24
Alignment explanation
Indices: 6934605--6934652 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
6934595 GAAAGCAAGT
*
6934605 AAAAAAGCTAAGTAGTTTGAGGTG
1 AAAAAAGCTAAGAAGTTTGAGGTG
* *
6934629 AAAAATGCTAGGAAGTTTGAGGTG
1 AAAAAAGCTAAGAAGTTTGAGGTG
6934653 TAGTATCACT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.40, C:0.04, G:0.31, T:0.25
Consensus pattern (24 bp):
AAAAAAGCTAAGAAGTTTGAGGTG
Found at i:6940226 original size:21 final size:21
Alignment explanation
Indices: 6940187--6940227 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
6940177 ATAGGGAATG
*
6940187 AAGTGAATGTTGTACCAAATA
1 AAGTGAATGTTGCACCAAATA
*
6940208 AAGTGAATGTTGCATCAAAT
1 AAGTGAATGTTGCACCAAAT
6940228 TAAGGAGTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.41, C:0.10, G:0.20, T:0.29
Consensus pattern (21 bp):
AAGTGAATGTTGCACCAAATA
Found at i:6940696 original size:27 final size:27
Alignment explanation
Indices: 6940659--6940735 Score: 127
Period size: 27 Copynumber: 2.9 Consensus size: 27
6940649 TTTTCAGCAT
*
6940659 ATAACATGTATGTTACAAGCCATGTGC
1 ATAACACGTATGTTACAAGCCATGTGC
6940686 ATAACACGTATGTTACAAGCCATGTGC
1 ATAACACGTATGTTACAAGCCATGTGC
* *
6940713 ATAACACGTATGCTACACGCCAT
1 ATAACACGTATGTTACAAGCCAT
6940736 TAATGCTTAG
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (27 bp):
ATAACACGTATGTTACAAGCCATGTGC
Found at i:6952878 original size:23 final size:23
Alignment explanation
Indices: 6952852--6952899 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
6952842 TACTTGATTC
6952852 TCCTAATGTTGCTCCAACGTTTA
1 TCCTAATGTTGCTCCAACGTTTA
** *
6952875 TCCTGGTTTTGCTCCAACGTTTA
1 TCCTAATGTTGCTCCAACGTTTA
6952898 TC
1 TC
6952900 TGATTTAGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.17, C:0.27, G:0.15, T:0.42
Consensus pattern (23 bp):
TCCTAATGTTGCTCCAACGTTTA
Found at i:6953378 original size:18 final size:18
Alignment explanation
Indices: 6953355--6953389 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
6953345 TTGATAATGC
*
6953355 TGCTGCCACTGTTCCTAA
1 TGCTGCCACTGTCCCTAA
*
6953373 TGCTGCCTCTGTCCCTA
1 TGCTGCCACTGTCCCTA
6953390 CTACCACTAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.11, C:0.37, G:0.17, T:0.34
Consensus pattern (18 bp):
TGCTGCCACTGTCCCTAA
Found at i:6958172 original size:24 final size:23
Alignment explanation
Indices: 6958149--6958192 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
6958139 TTGGTTTTCT
6958149 TAGTTTTGCTCCAACGTTTATTC
1 TAGTTTTGCTCCAACGTTTATTC
*
6958172 TGGTTTTGCTCCAACGTTTAT
1 TAGTTTTGCTCCAACGTTTAT
6958193 CTGACTTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.16, C:0.20, G:0.16, T:0.48
Consensus pattern (23 bp):
TAGTTTTGCTCCAACGTTTATTC
Found at i:6959284 original size:13 final size:13
Alignment explanation
Indices: 6959266--6959290 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6959256 ATGGTATTTG
6959266 AAAAAAGAAAAAA
1 AAAAAAGAAAAAA
6959279 AAAAAAGAAAAA
1 AAAAAAGAAAAA
6959291 GAGGCAAAGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (13 bp):
AAAAAAGAAAAAA
Found at i:6961267 original size:2 final size:2
Alignment explanation
Indices: 6961260--6961289 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
6961250 CGATCCATGC
6961260 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
6961290 ATATATATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:6961294 original size:2 final size:2
Alignment explanation
Indices: 6961289--6961323 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
6961279 TCTCTCTCTC
6961289 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6961324 CAGGTAACTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:6962992 original size:56 final size:56
Alignment explanation
Indices: 6962919--6963057 Score: 224
Period size: 56 Copynumber: 2.5 Consensus size: 56
6962909 AGGATGTAAG
* *
6962919 TACACAGGATGTTAGTATTATAGTGTATTGTTTTTCTATCTTTATAATCTCATTTC
1 TACACAGGATGTAAGTATTATAGTGTATTGTTTTTCCATCTTTATAATCTCATTTC
* * * *
6962975 TACACAAGATGTAAGTATTATAGTGTTTTGTTTTTCCATCTTTATAATGTTATTTC
1 TACACAGGATGTAAGTATTATAGTGTATTGTTTTTCCATCTTTATAATCTCATTTC
6963031 TACACAGGATGTAAGTATTATAGTGTA
1 TACACAGGATGTAAGTATTATAGTGTA
6963058 AAAATGTCAT
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 75 1.00
ACGTcount: A:0.28, C:0.11, G:0.14, T:0.47
Consensus pattern (56 bp):
TACACAGGATGTAAGTATTATAGTGTATTGTTTTTCCATCTTTATAATCTCATTTC
Found at i:6963086 original size:40 final size:40
Alignment explanation
Indices: 6963020--6963100 Score: 126
Period size: 40 Copynumber: 2.0 Consensus size: 40
6963010 CCATCTTTAT
* *
6963020 AATGTTATTTCTACACAGGATGTAAGTATTATAGTGTAAA
1 AATGTCATTTCTACACAGGATATAAGTATTATAGTGTAAA
**
6963060 AATGTCATTTCTACATTGGATATAAGTATTATAGTGTAAA
1 AATGTCATTTCTACACAGGATATAAGTATTATAGTGTAAA
6963100 A
1 A
6963101 TCAAATTCAC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.38, C:0.07, G:0.16, T:0.38
Consensus pattern (40 bp):
AATGTCATTTCTACACAGGATATAAGTATTATAGTGTAAA
Found at i:6963248 original size:101 final size:103
Alignment explanation
Indices: 6963082--6963288 Score: 287
Period size: 101 Copynumber: 2.0 Consensus size: 103
6963072 ACATTGGATA
* * *
6963082 TAAGTATTATAGTGTAAAATCAAATTCACAGTAAAACAATATTTTCTAAGACTACCATTATGTTT
1 TAAGTATTATACTGTAAAATCAAATT-ACAGTAAAACAATATTTTCTAAAACTACCATTACGTTT
6963147 TTCTCT-TT-TCATAGTGTCATTTTCTAAAACTACCTATG
65 TTCT-TATTCTCATAGTGTCATTTTCTAAAACTACCTATG
* *
6963185 TAAGTATTATACTGTAGAATCAAATT-CA-TAATAACACTATTTTCTAAAACTACCATTACGTTT
1 TAAGTATTATACTGTAAAATCAAATTACAGTAA-AACAATATTTTCTAAAACTACCATTACGTTT
* * *
6963248 TTCTTATTCTCATAGTGTTATTTTCTAAGACTACCTGTG
65 TTCTTATTCTCATAGTGTCATTTTCTAAAACTACCTATG
6963287 TA
1 TA
6963289 GTGTCATTTC
Statistics
Matches: 93, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
100 4 0.04
101 36 0.39
102 29 0.31
103 24 0.26
ACGTcount: A:0.34, C:0.16, G:0.09, T:0.42
Consensus pattern (103 bp):
TAAGTATTATACTGTAAAATCAAATTACAGTAAAACAATATTTTCTAAAACTACCATTACGTTTT
TCTTATTCTCATAGTGTCATTTTCTAAAACTACCTATG
Found at i:6963396 original size:75 final size:75
Alignment explanation
Indices: 6963266--6963449 Score: 244
Period size: 75 Copynumber: 2.4 Consensus size: 75
6963256 CTCATAGTGT
* * * *
6963266 TATTTTCTAAGACTACCTGTGTAGTGTCATTTCTACACAGGATGTAAACATTATACACATCAAAT
1 TATTTTCTAAGACTACC-AT-TA-CGT-ATTTCTACACAGGATATAAACACTATACACATCAAAT
*
6963331 TCATAGTAACACAA
62 TCATAATAACACAA
* *
6963345 TATTTTCTAAGACTACCATTACGTATTTCTACATAGGATATAAATACTATACACATCAAATTCAT
1 TATTTTCTAAGACTACCATTACGTATTTCTACACAGGATATAAACACTATACACATCAAATTCAT
6963410 AATAACACAA
66 AATAACACAA
* *
6963420 TACTTTCTAAGACTACTATTACGT-TTTCTA
1 TATTTTCTAAGACTACCATTACGTATTTCTA
6963450 TTTTTACAGT
Statistics
Matches: 96, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
74 6 0.06
75 68 0.71
76 2 0.02
77 2 0.02
78 1 0.01
79 17 0.18
ACGTcount: A:0.38, C:0.19, G:0.08, T:0.35
Consensus pattern (75 bp):
TATTTTCTAAGACTACCATTACGTATTTCTACACAGGATATAAACACTATACACATCAAATTCAT
AATAACACAA
Found at i:6964181 original size:78 final size:78
Alignment explanation
Indices: 6964067--6964225 Score: 282
Period size: 78 Copynumber: 2.0 Consensus size: 78
6964057 TATACACATC
6964067 AAATTCATAGTAACACAATTGTCACTTTCTAAGACTACCAGTCTTTCTACACAGGATGCAAAAAT
1 AAATTCATAGTAACACAATTGTCACTTTCTAAGACTACCAGTCTTTCTACACAGGATGCAAAAAT
*
6964132 TATACACAAATAA
66 TAAACACAAATAA
* **
6964145 AAATTCATAGTAACACAATTGTCACTTTCTAAGACTACCAGTCTTTCTACACAGGATGTAACTAT
1 AAATTCATAGTAACACAATTGTCACTTTCTAAGACTACCAGTCTTTCTACACAGGATGCAAAAAT
6964210 TAAACACAAATAA
66 TAAACACAAATAA
6964223 AAA
1 AAA
6964226 AGAAAAATCA
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
78 77 1.00
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.28
Consensus pattern (78 bp):
AAATTCATAGTAACACAATTGTCACTTTCTAAGACTACCAGTCTTTCTACACAGGATGCAAAAAT
TAAACACAAATAA
Found at i:6972369 original size:19 final size:19
Alignment explanation
Indices: 6972345--6972381 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
6972335 CGACATAGTT
6972345 ATTGTTTTATTGTTATGAC
1 ATTGTTTTATTGTTATGAC
*
6972364 ATTGTTTTGTTGTTATGA
1 ATTGTTTTATTGTTATGA
6972382 TATAAATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.19, C:0.03, G:0.19, T:0.59
Consensus pattern (19 bp):
ATTGTTTTATTGTTATGAC
Found at i:6974049 original size:26 final size:26
Alignment explanation
Indices: 6974013--6974064 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
6974003 AATATTCCTT
*
6974013 ATACAACTTGGCAGAGCATTGTCGAC
1 ATACAACTTGGCAGAGCATTATCGAC
6974039 ATACAACTTGGCAGAGCATTATCGAC
1 ATACAACTTGGCAGAGCATTATCGAC
6974065 TATCTTAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (26 bp):
ATACAACTTGGCAGAGCATTATCGAC
Found at i:6983104 original size:261 final size:261
Alignment explanation
Indices: 6982629--6983152 Score: 798
Period size: 261 Copynumber: 2.0 Consensus size: 261
6982619 GCTCGTAAAT
* * **
6982629 GCTGCTGAGGCGAGATGGAAATTAAAATCGTATGTCAGCGTTGCAGGCTAAAGTTTGCAGCGGTA
1 GCTGCAGAGGCGAGATGGAAATTAAAATCGTATGTCAGCGTTGCAGGCAAAAGTTTGCAGCGACA
* * * *
6982694 ACCACTGCTGAGACACTTGTTTGTCCACATTGCCTTAAGGTCAATCCAAATCGAACGTTACAGAG
66 ACCAATGCTGAGACACTTGTTTGCCCACATTGCCGTAAGGTCAATCCAAATCGAACGTTACAGAA
* *
6982759 ACGAACATCTACCGGCGATGAAATAAATTTTCCCTTTTGTTTGAAAGGCACTAGAGATGAAATAA
131 ACGAACATCTACCGGAGATGAAATAAATTTTCCCTTTTGTTTGAAAGGCACCAGAGATGAAATAA
* * *
6982824 ATGATACCATTGTAAGGCCACCGCCTCGAGGAGCCACACTGCATGCAACCGTTGATGCCTGCTAC
196 ATGACACCATTGAAAGGCCACCGCCTCGAGGAGCCAAACTGCATGCAACCGTTGATGCCTGCTAC
6982889 A
261 A
6982890 GCTGCAGAGGCGAGATGGAAATTAAAATCGTATGTCAGCGTTGCAGGCAAAAGTTTGCAGCGACA
1 GCTGCAGAGGCGAGATGGAAATTAAAATCGTATGTCAGCGTTGCAGGCAAAAGTTTGCAGCGACA
* * * * *
6982955 AGCAATGCTGAGGCAGTTGTTTGCCCACATTGCCGTATGGTCAATCCTAATCGAACGTTACAGAA
66 ACCAATGCTGAGACACTTGTTTGCCCACATTGCCGTAAGGTCAATCCAAATCGAACGTTACAGAA
* * * * *
6983020 ACGATCATCTACCGGAGATGAAATAAATTTT-TCTTTGTTTTTGAAAGGCACCGGAGGTGAAATA
131 ACGAACATCTACCGGAGATGAAATAAATTTTCCCTTT-TGTTTGAAAGGCACCAGAGATGAAATA
* * *
6983084 AATGACACCATTGAAAGGCCACTGCCTCGAGGAGCCAAACTGTATGCAATCGTTGATGCCTGCTA
195 AATGACACCATTGAAAGGCCACCGCCTCGAGGAGCCAAACTGCATGCAACCGTTGATGCCTGCTA
6983149 CA
260 CA
6983151 GC
1 GC
6983153 GGAACTGTTC
Statistics
Matches: 236, Mismatches: 26, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
260 4 0.02
261 232 0.98
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (261 bp):
GCTGCAGAGGCGAGATGGAAATTAAAATCGTATGTCAGCGTTGCAGGCAAAAGTTTGCAGCGACA
ACCAATGCTGAGACACTTGTTTGCCCACATTGCCGTAAGGTCAATCCAAATCGAACGTTACAGAA
ACGAACATCTACCGGAGATGAAATAAATTTTCCCTTTTGTTTGAAAGGCACCAGAGATGAAATAA
ATGACACCATTGAAAGGCCACCGCCTCGAGGAGCCAAACTGCATGCAACCGTTGATGCCTGCTAC
A
Found at i:6989339 original size:2 final size:2
Alignment explanation
Indices: 6989334--6989375 Score: 68
Period size: 2 Copynumber: 21.5 Consensus size: 2
6989324 GCATATATTT
*
6989334 TA TA TA TG TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6989375 T
1 T
6989376 NAAAACTGTT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7012700 original size:22 final size:21
Alignment explanation
Indices: 7012656--7012700 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
7012646 CCCGAGAGTT
* *
7012656 TCTCGCTGCAGTGAAAATGAA
1 TCTCGCTGCAGTAAAAATAAA
*
7012677 TCTCGCTGTAGTAAGAAATAAA
1 TCTCGCTGCAGTAA-AAATAAA
7012699 TC
1 TC
7012701 AATATAGTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.27
Consensus pattern (21 bp):
TCTCGCTGCAGTAAAAATAAA
Found at i:7012833 original size:2 final size:2
Alignment explanation
Indices: 7012822--7012860 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
7012812 ATAAACTTTC
7012822 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7012861 AGTTATAGNN
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:7013081 original size:43 final size:43
Alignment explanation
Indices: 7013020--7013146 Score: 202
Period size: 43 Copynumber: 3.0 Consensus size: 43
7013010 ATGAAAATAC
* *
7013020 TCAGCTCATGTGCACTCCCTAC-TCGCACATAACCGGGTCATCA
1 TCAGCTCATGTGCACTCCC-ACACCGCACATAACTGGGTCATCA
* *
7013063 TCAGCTCATGTGCACTCCCACACCGCACATAGCTAGGTCATCA
1 TCAGCTCATGTGCACTCCCACACCGCACATAACTGGGTCATCA
7013106 TCAGCTCATGTGCACTCCCACACCGCACATAACTGGGTCAT
1 TCAGCTCATGTGCACTCCCACACCGCACATAACTGGGTCAT
7013147 TATTATCACA
Statistics
Matches: 77, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
42 2 0.03
43 75 0.97
ACGTcount: A:0.24, C:0.37, G:0.17, T:0.22
Consensus pattern (43 bp):
TCAGCTCATGTGCACTCCCACACCGCACATAACTGGGTCATCA
Found at i:7013210 original size:88 final size:88
Alignment explanation
Indices: 7013104--7013279 Score: 264
Period size: 88 Copynumber: 2.0 Consensus size: 88
7013094 GCTAGGTCAT
* ** * *
7013104 CATCAGCTCATGTGCACTCCCACACCGCACATAACTGGGTCATTATTATCACAC-AAAAGGAGCA
1 CATCAGCTCATGTACACTCCCACACAACACATAACTAGGTCATTATTATCACACGAAAA-AAGCA
7013168 TCCAAAGCATAATATACATATCAA
65 TCCAAAGCATAATATACATATCAA
*
7013192 CATCAGCTCATGTACACTCCCACACAACACATAGCTAGGTCATTATTATCACACGAAAAAAGCAT
1 CATCAGCTCATGTACACTCCCACACAACACATAACTAGGTCATTATTATCACACGAAAAAAGCAT
* *
7013257 TCAAGGCATAATATACATATCAA
66 CCAAAGCATAATATACATATCAA
7013280 TATAATGTGA
Statistics
Matches: 79, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
88 75 0.95
89 4 0.05
ACGTcount: A:0.39, C:0.27, G:0.11, T:0.22
Consensus pattern (88 bp):
CATCAGCTCATGTACACTCCCACACAACACATAACTAGGTCATTATTATCACACGAAAAAAGCAT
CCAAAGCATAATATACATATCAA
Found at i:7014742 original size:33 final size:33
Alignment explanation
Indices: 7014679--7014742 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
7014669 TTCGATACTG
* *
7014679 AATAAAATATTAATATTTTAATATTATTTTATT
1 AATAAAATATTAATATTCTAAAATTATTTTATT
*
7014712 AATAAAATATTATTTATTCTAAAATT-TTTTA
1 AATAAAATATTA-ATATTCTAAAATTATTTTA
7014743 CTTGTCTCTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
33 17 0.63
34 10 0.37
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (33 bp):
AATAAAATATTAATATTCTAAAATTATTTTATT
Found at i:7019740 original size:22 final size:21
Alignment explanation
Indices: 7019715--7019786 Score: 62
Period size: 22 Copynumber: 3.5 Consensus size: 21
7019705 AGAGTTCATG
7019715 GCTGCAATGAGAATCCATTTT
1 GCTGCAATGAGAATCCATTTT
**
7019736 CGCTGCAGCGA-AATTCC---TT
1 -GCTGCAATGAGAA-TCCATTTT
*
7019755 GCTGCAGTGAGAATCCATTCTT
1 GCTGCAATGAGAATCCATT-TT
7019777 GCTGCAATGA
1 GCTGCAATGA
7019787 AATTCGGAGC
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
18 12 0.30
19 4 0.10
21 2 0.05
22 22 0.55
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (21 bp):
GCTGCAATGAGAATCCATTTT
Found at i:7019759 original size:40 final size:40
Alignment explanation
Indices: 7019715--7019791 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
7019705 AGAGTTCATG
*
7019715 GCTGCAATGAGAATCCATT-TTCGCTGCAGCGAAATTCCTT
1 GCTGCAATGAGAATCCATTCTT-GCTGCAACGAAATTCCTT
* *
7019755 GCTGCAGTGAGAATCCATTCTTGCTGCAATGAAATTC
1 GCTGCAATGAGAATCCATTCTTGCTGCAACGAAATTC
7019792 GGAGCATGGA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
40 31 0.94
41 2 0.06
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (40 bp):
GCTGCAATGAGAATCCATTCTTGCTGCAACGAAATTCCTT
Found at i:7020212 original size:88 final size:88
Alignment explanation
Indices: 7020064--7020242 Score: 304
Period size: 88 Copynumber: 2.0 Consensus size: 88
7020054 CATAGCCGAG
7020064 TCATCATCAGCTCATGTGCACTCCCACACCGCACATAACTGGGTCATTATTATCACACAAAAGGA
1 TCATCATCAGCTCATGTGCACTCCCACACCGCACATAACTGGGTCATTATTATCACACAAAAGGA
7020129 GCATCCAAAGCATAATATACAAA
66 GCATCCAAAGCATAATATACAAA
* * * *
7020152 TCATCATTAGCTCATGTGCACTCCTACACCGCACATAGCTGGGTCATTATTATCACACAAAATGA
1 TCATCATCAGCTCATGTGCACTCCCACACCGCACATAACTGGGTCATTATTATCACACAAAAGGA
* *
7020217 GCATTCAAAGCATAATATACATA
66 GCATCCAAAGCATAATATACAAA
7020240 TCA
1 TCA
7020243 ATATAATGTG
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
88 85 1.00
ACGTcount: A:0.36, C:0.27, G:0.12, T:0.25
Consensus pattern (88 bp):
TCATCATCAGCTCATGTGCACTCCCACACCGCACATAACTGGGTCATTATTATCACACAAAAGGA
GCATCCAAAGCATAATATACAAA
Found at i:7022242 original size:21 final size:22
Alignment explanation
Indices: 7022182--7022263 Score: 112
Period size: 22 Copynumber: 3.8 Consensus size: 22
7022172 ACTTAATCAC
*
7022182 TACGTGACTAGTTTTTAGACAC
1 TACGTGACTAGTTTTTAGACAT
7022204 TACGTGACTAGTTTTTAGACAT
1 TACGTGACTAGTTTTTAGACAT
* *
7022226 TACGTGATTAG-TTTTAGGCAT
1 TACGTGACTAGTTTTTAGACAT
* *
7022247 TGCGTGACTGGTTTTTA
1 TACGTGACTAGTTTTTA
7022264 AATATAGCAT
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
21 17 0.32
22 36 0.68
ACGTcount: A:0.23, C:0.13, G:0.22, T:0.41
Consensus pattern (22 bp):
TACGTGACTAGTTTTTAGACAT
Found at i:7022352 original size:23 final size:23
Alignment explanation
Indices: 7022296--7022357 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
7022286 AGTAATGCCT
*
7022296 AAGTCACA-CAATACCTTACTAAC
1 AAGTCA-AGCAATGCCTTACTAAC
* * *
7022319 TAGACATGCAATGCCTTACTAAC
1 AAGTCAAGCAATGCCTTACTAAC
7022342 AAGTCAAGCAATGCCT
1 AAGTCAAGCAATGCCT
7022358 ATCAACTAGT
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.39, C:0.27, G:0.11, T:0.23
Consensus pattern (23 bp):
AAGTCAAGCAATGCCTTACTAAC
Found at i:7022393 original size:23 final size:22
Alignment explanation
Indices: 7022350--7022401 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 22
7022340 ACAAGTCAAG
* *
7022350 CAATGCCTATCAACTAGTCACA
1 CAATGCCTATCAACCAATCACA
*
7022372 CAATGCCATATCAACCAATCACG
1 CAATGCC-TATCAACCAATCACA
7022395 CAATGCC
1 CAATGCC
7022402 CAAAGTCAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 7 0.27
23 19 0.73
ACGTcount: A:0.37, C:0.35, G:0.10, T:0.19
Consensus pattern (22 bp):
CAATGCCTATCAACCAATCACA
Done.