Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41236440
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2030548 characters in sequence are not A, C, G, or T
File 15 of 106
Found at i:7022413 original size:21 final size:21
Alignment explanation
Indices: 7022390--7022484 Score: 91
Period size: 21 Copynumber: 4.5 Consensus size: 21
7022380 TATCAACCAA
*
7022390 TCACGCAATGCCCAAAGTCAA
1 TCACGCAATGCCCAAAGTCAG
* * * *
7022411 TCACGCAATACCTAAAAATTAG
1 TCACGCAATGCC-CAAAGTCAG
* *
7022433 TCATGCAATGCCTAAAGTCAG
1 TCACGCAATGCCCAAAGTCAG
* **
7022454 TCACGTAATGTTCAAAGTCAG
1 TCACGCAATGCCCAAAGTCAG
7022475 TCACGCAATG
1 TCACGCAATG
7022485 TCTAAAAACC
Statistics
Matches: 57, Mismatches: 16, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
21 42 0.74
22 15 0.26
ACGTcount: A:0.37, C:0.25, G:0.16, T:0.22
Consensus pattern (21 bp):
TCACGCAATGCCCAAAGTCAG
Found at i:7022663 original size:61 final size:59
Alignment explanation
Indices: 7022591--7022719 Score: 143
Period size: 60 Copynumber: 2.2 Consensus size: 59
7022581 TCTATTTGAC
* * * * *
7022591 AAAAATACTCAAAATATTCAAAGGTTTTTCTTCATATATCAAAAA-TCACTACAAAATGCTT
1 AAAAATGCTCAAAACACTCAAAGG-CTTTCTTCATACATCAAAAACT-ACTACAAAATGC-T
* * *
7022652 AAAAATGCTCAAAACGCTCAAAGGCTTTCTTCGTGCATCAAAAACTACTACAAAATGCT
1 AAAAATGCTCAAAACACTCAAAGGCTTTCTTCATACATCAAAAACTACTACAAAATGCT
*
7022711 CAAAATGCT
1 AAAAATGCT
7022720 TAAATGTTTT
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
59 9 0.16
60 28 0.48
61 21 0.36
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.28
Consensus pattern (59 bp):
AAAAATGCTCAAAACACTCAAAGGCTTTCTTCATACATCAAAAACTACTACAAAATGCT
Found at i:7023202 original size:52 final size:52
Alignment explanation
Indices: 7023123--7023238 Score: 214
Period size: 52 Copynumber: 2.2 Consensus size: 52
7023113 GGGGCCGTGG
7023123 CCCCTTCAAAATTTTTAAAAATATTTATTTTATATATATTTTTTATCAATGGT
1 CCCC-TCAAAATTTTTAAAAATATTTATTTTATATATATTTTTTATCAATGGT
7023176 CCCCTCAAAATTTTTAAAAATATTTATTTTATATATATTTTTTATCAATGGT
1 CCCCTCAAAATTTTTAAAAATATTTATTTTATATATATTTTTTATCAATGGT
*
7023228 ACCCTCAAAAT
1 CCCCTCAAAAT
7023239 NCTCCAAAAT
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
52 58 0.94
53 4 0.06
ACGTcount: A:0.35, C:0.14, G:0.03, T:0.47
Consensus pattern (52 bp):
CCCCTCAAAATTTTTAAAAATATTTATTTTATATATATTTTTTATCAATGGT
Found at i:7023570 original size:1 final size:1
Alignment explanation
Indices: 7023564--7023597 Score: 59
Period size: 1 Copynumber: 34.0 Consensus size: 1
7023554 AGAGGTAAAG
*
7023564 TTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
7023598 ATTTATATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 31 1.00
ACGTcount: A:0.03, C:0.00, G:0.00, T:0.97
Consensus pattern (1 bp):
T
Found at i:7023602 original size:14 final size:13
Alignment explanation
Indices: 7023564--7023603 Score: 64
Period size: 12 Copynumber: 3.1 Consensus size: 13
7023554 AGAGGTAAAG
7023564 TTTTTTTTTTTT-
1 TTTTTTTTTTTTA
7023576 TTTTTTTTTTTTA
1 TTTTTTTTTTTTA
7023589 TTTTTTTTTATTTA
1 TTTTTTTTT-TTTA
7023603 T
1 T
7023604 ATTATTTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
12 12 0.46
13 9 0.35
14 5 0.19
ACGTcount: A:0.07, C:0.00, G:0.00, T:0.93
Consensus pattern (13 bp):
TTTTTTTTTTTTA
Found at i:7023608 original size:19 final size:19
Alignment explanation
Indices: 7023570--7023610 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
7023560 AAAGTTTTTT
* * *
7023570 TTTTTTTTTTTTTTTTTTA
1 TTTTTTTTTATTTATATTA
7023589 TTTTTTTTTATTTATATTA
1 TTTTTTTTTATTTATATTA
7023608 TTT
1 TTT
7023611 AACTATTATG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (19 bp):
TTTTTTTTTATTTATATTA
Found at i:7026205 original size:35 final size:35
Alignment explanation
Indices: 7026098--7026210 Score: 145
Period size: 35 Copynumber: 3.2 Consensus size: 35
7026088 AGAATAACCT
*
7026098 GAACAAGTGAAGTGCTACTTCACGCAAAATAATTA
1 GAACAAGTGAAGTGCTACTTCACGCAAAACAATTA
* * *
7026133 AAACAAGTGAAGCGCTACTTCACGCAAAACAACTA
1 GAACAAGTGAAGTGCTACTTCACGCAAAACAATTA
* * * *
7026168 GAACAAGTGGAGTACTACTTAAAGCAAAACAATTA
1 GAACAAGTGAAGTGCTACTTCACGCAAAACAATTA
*
7026203 GAATAAGT
1 GAACAAGT
7026211 AAAGCACTAC
Statistics
Matches: 66, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 66 1.00
ACGTcount: A:0.46, C:0.18, G:0.17, T:0.19
Consensus pattern (35 bp):
GAACAAGTGAAGTGCTACTTCACGCAAAACAATTA
Found at i:7026473 original size:26 final size:26
Alignment explanation
Indices: 7026444--7026496 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
7026434 TTTTACCTTG
7026444 TTCTCGTACACCTATTCAT-GTATAGC
1 TTCTCGTACACCTATTC-TCGTATAGC
* **
7026470 TTCTCTTGTACCTATTCTCGTATAGC
1 TTCTCGTACACCTATTCTCGTATAGC
7026496 T
1 T
7026497 CCTTCTCTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.19, C:0.26, G:0.11, T:0.43
Consensus pattern (26 bp):
TTCTCGTACACCTATTCTCGTATAGC
Found at i:7026487 original size:14 final size:14
Alignment explanation
Indices: 7026470--7026517 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
7026460 CATGTATAGC
7026470 TTCTCTTGTACCTA
1 TTCTCTTGTACCTA
* * * *
7026484 TTCTCGTATAGCTCC
1 TTCTCTTGTACCT-A
7026499 TTCTCTTGTACCTA
1 TTCTCTTGTACCTA
7026513 TTCTC
1 TTCTC
7026518 GTATATCTCT
Statistics
Matches: 25, Mismatches: 8, Indels: 2
0.71 0.23 0.06
Matches are distributed among these distances:
14 15 0.60
15 10 0.40
ACGTcount: A:0.12, C:0.31, G:0.08, T:0.48
Consensus pattern (14 bp):
TTCTCTTGTACCTA
Found at i:7028063 original size:102 final size:100
Alignment explanation
Indices: 7027795--7028068 Score: 264
Period size: 102 Copynumber: 2.7 Consensus size: 100
7027785 AAAATTCATA
* * * * *
7027795 TTCAGCTGCTAGCTTTATCGCTTATATTTTGGTTGTAATTG-TATTATACTATTAGTTGCCAGCT
1 TTCAGCCGCTAGCTTTATCGCTCATATTTTGGCTGTAA-TGATATTATACTATT-GGTGCAAGCT
* * *
7027859 TTAGCACTTATTCTTTGACCATAGTTCATCATTCTTAC
64 TTATCGCTTATTCTTTGACCATAATTCATCATTC-TAC
* * * * * * * *
7027897 TTCAGCCACAAGCTTTACCACTCATATTTTGGCTGCAATGATATTTTTCTTTTGGTCGCAAGCTT
1 TTCAGCCGCTAGCTTTATCGCTCATATTTTGGCTGTAATGATATTATACTATTGGT-GCAAGCTT
* *
7027962 TATCGCTTATTCTTTGACCATAATTTATTATTC-AC
65 TATCGCTTATTCTTTGACCATAATTCATCATTCTAC
* * * * *
7027997 ATTCCAGTCGCTAGCTTTATCGCTCATAATTTGGCTGTAATGATATTATGCTATTGGCTACTAGC
1 -TT-CAGCCGCTAGCTTTATCGCTCATATTTTGGCTGTAATGATATTATACTATTGG-TGCAAGC
7028062 TTTATCG
63 TTTATCG
7028069 TTCATTTCTT
Statistics
Matches: 137, Mismatches: 30, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
100 2 0.01
101 6 0.04
102 128 0.93
103 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.14, T:0.43
Consensus pattern (100 bp):
TTCAGCCGCTAGCTTTATCGCTCATATTTTGGCTGTAATGATATTATACTATTGGTGCAAGCTTT
ATCGCTTATTCTTTGACCATAATTCATCATTCTAC
Found at i:7031504 original size:18 final size:18
Alignment explanation
Indices: 7031462--7031511 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
7031452 TTACAACTTT
* *
7031462 AAATAAAAATAATATAAT
1 AAATAAAAATAATAAAAA
* *
7031480 AATTAAAAATTATAAAAA
1 AAATAAAAATAATAAAAA
7031498 AAAT-AAAATAATAA
1 AAATAAAAATAATAA
7031512 TAACTTGCCG
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
17 9 0.35
18 17 0.65
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (18 bp):
AAATAAAAATAATAAAAA
Found at i:7031710 original size:9 final size:9
Alignment explanation
Indices: 7031696--7031791 Score: 71
Period size: 9 Copynumber: 10.9 Consensus size: 9
7031686 ATATATATAA
7031696 TAAAAAAAT
1 TAAAAAAAT
7031705 T--AAAAAT
1 TAAAAAAAT
7031712 TAAAAAAAAT
1 T-AAAAAAAT
*
7031722 TAAAAAAAA
1 TAAAAAAAT
7031731 TAAAATAAAT
1 TAAAA-AAAT
7031741 ATAAAAAAA-
1 -TAAAAAAAT
7031750 -AATTAAAAAT
1 TAA--AAAAAT
7031760 T-AAAAAA-
1 TAAAAAAAT
**
7031767 -AAATTAAT
1 TAAAAAAAT
7031775 TAAAAAAAT
1 TAAAAAAAT
7031784 TAAAAAAA
1 TAAAAAAA
7031792 AAAAAAAAAC
Statistics
Matches: 69, Mismatches: 6, Indels: 24
0.70 0.06 0.24
Matches are distributed among these distances:
7 13 0.19
8 5 0.07
9 32 0.46
10 14 0.20
11 5 0.07
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (9 bp):
TAAAAAAAT
Found at i:7031727 original size:11 final size:10
Alignment explanation
Indices: 7031706--7031800 Score: 85
Period size: 10 Copynumber: 9.5 Consensus size: 10
7031696 TAAAAAAATT
7031706 AAAAATTAAA
1 AAAAATTAAA
7031716 AAAAATTAAA
1 AAAAATTAAA
7031726 AAAAA-TAAA
1 AAAAATTAAA
*
7031735 ATAAATATAAAA
1 A-AAA-ATTAAA
7031747 AAAAATT---
1 AAAAATTAAA
7031754 AAAAATTAAAA
1 AAAAATT-AAA
7031765 AAAAATTAATTAA
1 AAAAATT-A--AA
7031778 AAAAATTAAA
1 AAAAATTAAA
7031788 AAAAA--AAA
1 AAAAATTAAA
7031796 AAAAA
1 AAAAA
7031801 CGCAGCTTGT
Statistics
Matches: 74, Mismatches: 2, Indels: 20
0.77 0.02 0.21
Matches are distributed among these distances:
7 7 0.09
8 8 0.11
9 5 0.07
10 27 0.36
11 13 0.18
12 5 0.07
13 9 0.12
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (10 bp):
AAAAATTAAA
Found at i:7031743 original size:49 final size:52
Alignment explanation
Indices: 7031671--7031773 Score: 160
Period size: 49 Copynumber: 2.0 Consensus size: 52
7031661 CCAAGTAAAA
*
7031671 AAAAAAAATATATATATATATATAATAAAAAAATTAAAAATT-AAAAAAAATT
1 AAAAAAAATATATATATAAATATAA-AAAAAAATTAAAAATTAAAAAAAAATT
7031723 AAAAAAAATA-A-A-ATAAATATAAAAAAAAATTAAAAATTAAAAAAAAATT
1 AAAAAAAATATATATATAAATATAAAAAAAAATTAAAAATTAAAAAAAAATT
7031772 AA
1 AA
7031774 TTAAAAAAAT
Statistics
Matches: 49, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
48 16 0.33
49 21 0.43
50 1 0.02
51 1 0.02
52 10 0.20
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (52 bp):
AAAAAAAATATATATATAAATATAAAAAAAAATTAAAAATTAAAAAAAAATT
Found at i:7031751 original size:31 final size:28
Alignment explanation
Indices: 7031697--7031799 Score: 118
Period size: 31 Copynumber: 3.5 Consensus size: 28
7031687 TATATATAAT
**
7031697 AAAAAAATTAAAAATT-AAAAAAAATTA
1 AAAAAAAAAAAAAATTAAAAAAAAATTA
7031724 AAAAAAATAAAATAAATATAAAAAAAAATTA
1 AAAAAAA-AAAA-AAAT-TAAAAAAAAATTA
*
7031755 AAAATTAAAAAAAAATTAATTAAAAAAATTA
1 AAAA-AAAAAAAAAATTAA--AAAAAAATTA
7031786 AAAAAAAAAAAAAA
1 AAAAAAAAAAAAAA
7031800 ACGCAGCTTG
Statistics
Matches: 65, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
27 7 0.11
28 2 0.03
29 7 0.11
30 14 0.22
31 33 0.51
32 2 0.03
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (28 bp):
AAAAAAAAAAAAAATTAAAAAAAAATTA
Found at i:7031752 original size:48 final size:49
Alignment explanation
Indices: 7031671--7031799 Score: 154
Period size: 48 Copynumber: 2.6 Consensus size: 49
7031661 CCAAGTAAAA
*
7031671 AAAAAAAATATATATATATATATAATAAAAAAATTAAAAATT-AAAAAAAATT
1 AAAAAAAATA-A-A-ATAAATATAA-AAAAAAATTAAAAATTAAAAAAAAATT
7031723 AAAAAAAATAAAATAAATATAAAAAAAAATTAAAAATTAAAAAAAAATT
1 AAAAAAAATAAAATAAATATAAAAAAAAATTAAAAATTAAAAAAAAATT
** * * *
7031772 AATTAAAA-AAATTAAAAAAAAAAAAAAA
1 AAAAAAAATAAAATAAATATAAAAAAAAA
7031800 ACGCAGCTTG
Statistics
Matches: 70, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
48 33 0.47
49 25 0.36
50 1 0.01
51 1 0.01
52 10 0.14
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (49 bp):
AAAAAAAATAAAATAAATATAAAAAAAAATTAAAAATTAAAAAAAAATT
Found at i:7031799 original size:17 final size:17
Alignment explanation
Indices: 7031697--7031769 Score: 83
Period size: 17 Copynumber: 4.1 Consensus size: 17
7031687 TATATATAAT
**
7031697 AAAAAAATTAAAAATTA
1 AAAAAAATTAAAAAAAA
7031714 AAAAAAATTAAAAAAAA
1 AAAAAAATTAAAAAAAA
7031731 TAAAATAAATATAAAAAAAA
1 -AAAA-AAAT-TAAAAAAAA
*
7031751 ATTAAAAATTAAAAAAAA
1 A-AAAAAATTAAAAAAAA
7031769 A
1 A
7031770 TTAATTAAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
17 15 0.31
18 14 0.29
19 9 0.18
20 11 0.22
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (17 bp):
AAAAAAATTAAAAAAAA
Found at i:7032605 original size:2 final size:2
Alignment explanation
Indices: 7032600--7032630 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7032590 TTTTACTTGA
7032600 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7032631 ATTCTTTCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7033104 original size:15 final size:15
Alignment explanation
Indices: 7033084--7033134 Score: 54
Period size: 15 Copynumber: 3.4 Consensus size: 15
7033074 CACCTTACAC
7033084 AAAGCATTACTGTCT
1 AAAGCATTACTGTCT
7033099 AAAGCATTACTAG-CT
1 AAAGCATTACT-GTCT
7033114 -AAG-ATGTTACTGTCT
1 AAAGCA--TTACTGTCT
7033129 AAAGCA
1 AAAGCA
7033135 GCACTGCCCA
Statistics
Matches: 30, Mismatches: 0, Indels: 10
0.75 0.00 0.25
Matches are distributed among these distances:
13 1 0.03
14 4 0.13
15 20 0.67
16 4 0.13
17 1 0.03
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (15 bp):
AAAGCATTACTGTCT
Found at i:7033409 original size:35 final size:35
Alignment explanation
Indices: 7033332--7033420 Score: 97
Period size: 35 Copynumber: 2.5 Consensus size: 35
7033322 TTGTACAGAG
* * * *
7033332 AACAACTTGAACAAGTGAAGTGCTACTTCACGTAG
1 AACAACTAGAACAAGTGAAGCGCTACTTCACGCAA
* * * *
7033367 AATAACTAGAACAAGTGAAGCGTTATTTTACGCAA
1 AACAACTAGAACAAGTGAAGCGCTACTTCACGCAA
*
7033402 AACAACTAGAACAAATGAA
1 AACAACTAGAACAAGTGAA
7033421 ATACTACTTA
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
35 44 1.00
ACGTcount: A:0.45, C:0.17, G:0.17, T:0.21
Consensus pattern (35 bp):
AACAACTAGAACAAGTGAAGCGCTACTTCACGCAA
Found at i:7033729 original size:29 final size:29
Alignment explanation
Indices: 7033687--7033757 Score: 90
Period size: 29 Copynumber: 2.4 Consensus size: 29
7033677 TCTTACCTTG
* *
7033687 TTCTCGTATACCTATT-TATGTACAGCTTA
1 TTCTCTTATACCTATTCT-CGTACAGCTTA
* *
7033716 TTCTCTTGTACCTATTCTCGTACAGCTTC
1 TTCTCTTATACCTATTCTCGTACAGCTTA
7033745 TTCTCTTATACCT
1 TTCTCTTATACCT
7033758 TTTTCTTGTA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
29 35 0.97
30 1 0.03
ACGTcount: A:0.18, C:0.27, G:0.08, T:0.46
Consensus pattern (29 bp):
TTCTCTTATACCTATTCTCGTACAGCTTA
Found at i:7040616 original size:19 final size:19
Alignment explanation
Indices: 7040592--7040628 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7040582 TGACATAGTT
*
7040592 ATTGTTTTATTGTTATGAC
1 ATTGTTTTACTGTTATGAC
*
7040611 ATTGTTTTGCTGTTATGA
1 ATTGTTTTACTGTTATGA
7040629 TACAAATTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.19, C:0.05, G:0.19, T:0.57
Consensus pattern (19 bp):
ATTGTTTTACTGTTATGAC
Found at i:7042299 original size:26 final size:26
Alignment explanation
Indices: 7042263--7042313 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
7042253 ATATTCCTTG
*
7042263 TACAACTTGGCAGAGCATTGTCGACA
1 TACAACTTGGCAGAGCATTATCGACA
7042289 TACAACTTGGCAGAGCATTATCGAC
1 TACAACTTGGCAGAGCATTATCGAC
7042314 TATCTTAAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.24
Consensus pattern (26 bp):
TACAACTTGGCAGAGCATTATCGACA
Found at i:7045011 original size:19 final size:19
Alignment explanation
Indices: 7044987--7045028 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
7044977 TTCCTCCCAA
7044987 TCAGGCAGCGAACTTTTGC
1 TCAGGCAGCGAACTTTTGC
*
7045006 TCAGGCAGCGCACTTTTGC
1 TCAGGCAGCGAACTTTTGC
7045025 TCAG
1 TCAG
7045029 CCTCCAGGCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.19, C:0.29, G:0.26, T:0.26
Consensus pattern (19 bp):
TCAGGCAGCGAACTTTTGC
Found at i:7045621 original size:36 final size:36
Alignment explanation
Indices: 7045574--7045645 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
7045564 GAAGATAGTT
7045574 TTTGTTATAACAGTAGGCTACATATGTCTGATATGC
1 TTTGTTATAACAGTAGGCTACATATGTCTGATATGC
7045610 TTTGTTATAACAGTAGGCTACATATGTCTGATATGC
1 TTTGTTATAACAGTAGGCTACATATGTCTGATATGC
7045646 ATTGACCTAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.39
Consensus pattern (36 bp):
TTTGTTATAACAGTAGGCTACATATGTCTGATATGC
Found at i:7046855 original size:2 final size:2
Alignment explanation
Indices: 7046850--7046880 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7046840 ACACACACAC
7046850 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7046881 AACTAGCAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7051482 original size:88 final size:88
Alignment explanation
Indices: 7051333--7051511 Score: 313
Period size: 88 Copynumber: 2.0 Consensus size: 88
7051323 CCTACACTAT
* *
7051333 AGGTCAAGATTGACAAGCGATTCCCTTTGGATGAGGTGCACTATGGATCAGACAAAAACTCAACA
1 AGGTCAAGATCGACAAGCGATTCCCTTTGGATGAGGTGCACTACGGATCAGACAAAAACTCAACA
* *
7051398 GCAAATAGAAGATGATAGGGTCG
66 GCAAATAGAAGACGACAGGGTCG
7051421 AGGTCAAGATCGACAAGCGATTCCCTTTGGATGAGGTGCACTACGGATCAGACAAAAACTCAACA
1 AGGTCAAGATCGACAAGCGATTCCCTTTGGATGAGGTGCACTACGGATCAGACAAAAACTCAACA
*
7051486 GCAAATTGAAGACGACAGGGTCG
66 GCAAATAGAAGACGACAGGGTCG
7051509 AGG
1 AGG
7051512 CTAATGGGAA
Statistics
Matches: 86, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
88 86 1.00
ACGTcount: A:0.36, C:0.19, G:0.27, T:0.18
Consensus pattern (88 bp):
AGGTCAAGATCGACAAGCGATTCCCTTTGGATGAGGTGCACTACGGATCAGACAAAAACTCAACA
GCAAATAGAAGACGACAGGGTCG
Found at i:7053933 original size:27 final size:28
Alignment explanation
Indices: 7053876--7053933 Score: 91
Period size: 27 Copynumber: 2.1 Consensus size: 28
7053866 CTATGAATGT
* *
7053876 AAAGATTACAAAAAGATACATAATATTA
1 AAAGATTACAAAAAGATACAAAATACTA
7053904 AAAGATTACAAAAA-ATACAAAATACTA
1 AAAGATTACAAAAAGATACAAAATACTA
7053931 AAA
1 AAA
7053934 AACAACTGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
27 14 0.50
28 14 0.50
ACGTcount: A:0.66, C:0.09, G:0.05, T:0.21
Consensus pattern (28 bp):
AAAGATTACAAAAAGATACAAAATACTA
Found at i:7053934 original size:28 final size:28
Alignment explanation
Indices: 7053876--7053934 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
7053866 CTATGAATGT
* *
7053876 AAAGATTACAAAAAGATACATAATATTA
1 AAAGATTACAAAAAGATACAAAATATAA
7053904 AAAGATTACAAAAA-ATACAAAATACTAA
1 AAAGATTACAAAAAGATACAAAATA-TAA
7053932 AAA
1 AAA
7053935 ACAACTGGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 9 0.32
28 19 0.68
ACGTcount: A:0.66, C:0.08, G:0.05, T:0.20
Consensus pattern (28 bp):
AAAGATTACAAAAAGATACAAAATATAA
Found at i:7056543 original size:14 final size:13
Alignment explanation
Indices: 7056511--7056544 Score: 59
Period size: 13 Copynumber: 2.5 Consensus size: 13
7056501 TACTAATTTA
7056511 AATAAAATTCTTT
1 AATAAAATTCTTT
7056524 AATAAAATTCTTT
1 AATAAAATTCTTT
7056537 AAGTAAAA
1 AA-TAAAA
7056545 ATTTTGTTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 15 0.75
14 5 0.25
ACGTcount: A:0.53, C:0.06, G:0.03, T:0.38
Consensus pattern (13 bp):
AATAAAATTCTTT
Found at i:7067826 original size:33 final size:32
Alignment explanation
Indices: 7067784--7067848 Score: 112
Period size: 33 Copynumber: 2.0 Consensus size: 32
7067774 ATTCAAGGGC
7067784 TGGAGCTTGTAAAGCTGCAACAAAACATCTCNT
1 TGGAGCTTGTAAAGCTGCAACAAAACATCTC-T
*
7067817 TGGAGCTTGTAAAGCTGCAACAGAACATCTCT
1 TGGAGCTTGTAAAGCTGCAACAAAACATCTCT
7067849 CTCTCTCTAG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 1 0.03
33 30 0.97
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.25
Consensus pattern (32 bp):
TGGAGCTTGTAAAGCTGCAACAAAACATCTCT
Found at i:7076445 original size:12 final size:12
Alignment explanation
Indices: 7076428--7076452 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7076418 GTAGAGCTAC
7076428 GACTATTTCATA
1 GACTATTTCATA
7076440 GACTATTTCATA
1 GACTATTTCATA
7076452 G
1 G
7076453 TGTTCTGTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.40
Consensus pattern (12 bp):
GACTATTTCATA
Found at i:7082878 original size:30 final size:31
Alignment explanation
Indices: 7082830--7082907 Score: 97
Period size: 30 Copynumber: 2.5 Consensus size: 31
7082820 TTATCATATC
7082830 AATATTTTAATATTAAATTACTAATGTTT-TAAT
1 AATATTTTAATA--AAATTACTAATGTTTCT-AT
* *
7082863 ATTATTTT-ATAAAATTATTAATGTTTCTAT
1 AATATTTTAATAAAATTACTAATGTTTCTAT
7082893 AATATTTTAATAAAA
1 AATATTTTAATAAAA
7082908 AGAAATTAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
30 23 0.57
31 7 0.17
32 3 0.08
33 7 0.17
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.51
Consensus pattern (31 bp):
AATATTTTAATAAAATTACTAATGTTTCTAT
Found at i:7082927 original size:18 final size:18
Alignment explanation
Indices: 7082904--7082959 Score: 71
Period size: 18 Copynumber: 3.1 Consensus size: 18
7082894 ATATTTTAAT
7082904 AAAAAGAAATTAAAATAA
1 AAAAAGAAATTAAAATAA
*
7082922 AAAAAGAAAAATAAAAGT--
1 AAAAAG-AAATTAAAA-TAA
7082940 AAAAAGAAATTAAAATAA
1 AAAAAGAAATTAAAATAA
7082958 AA
1 AA
7082960 TTTATATTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
16 1 0.03
17 8 0.25
18 14 0.44
19 8 0.25
20 1 0.03
ACGTcount: A:0.79, C:0.00, G:0.07, T:0.14
Consensus pattern (18 bp):
AAAAAGAAATTAAAATAA
Found at i:7082936 original size:19 final size:19
Alignment explanation
Indices: 7082904--7082944 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
7082894 ATATTTTAAT
*
7082904 AAAAAGAAATTAAAA-TAA
1 AAAAAGAAAATAAAAGTAA
7082922 AAAAAGAAAAATAAAAGTAA
1 AAAAAG-AAAATAAAAGTAA
7082942 AAA
1 AAA
7082945 GAAATTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 6 0.30
19 8 0.40
20 6 0.30
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.12
Consensus pattern (19 bp):
AAAAAGAAAATAAAAGTAA
Found at i:7083903 original size:15 final size:17
Alignment explanation
Indices: 7083867--7083903 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
7083857 AATTTTTTAA
*
7083867 TAATATTTAAATATTAT
1 TAATATATAAATATTAT
7083884 TAATATATAAAT-TT-T
1 TAATATATAAATATTAT
7083899 TAATA
1 TAATA
7083904 AAATATACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 6 0.32
16 2 0.11
17 11 0.58
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TAATATATAAATATTAT
Found at i:7085457 original size:16 final size:16
Alignment explanation
Indices: 7085436--7085466 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
7085426 CAATTTTTAA
7085436 TAAAATATTAATATTT
1 TAAAATATTAATATTT
7085452 TAAAATATTAATATT
1 TAAAATATTAATATT
7085467 NNNNNNNNNN
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TAAAATATTAATATTT
Found at i:7085775 original size:19 final size:18
Alignment explanation
Indices: 7085751--7085816 Score: 62
Period size: 19 Copynumber: 3.3 Consensus size: 18
7085741 TTTTTAAAAT
7085751 ATAAATAATTAA-ATTATAA
1 ATAAAT-ATTAATATT-TAA
7085770 ATAAATATTAATATTTAA
1 ATAAATATTAATATTTAA
7085788 ATTATTAATTATTAATATTTTAA
1 A-TA--AA-TATTAATA-TTTAA
7085811 ATAAAT
1 ATAAAT
7085817 TATCAATTAT
Statistics
Matches: 41, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
18 9 0.22
19 12 0.29
20 2 0.05
21 2 0.05
22 10 0.24
23 6 0.15
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
ATAAATATTAATATTTAA
Found at i:7085802 original size:15 final size:14
Alignment explanation
Indices: 7085744--7085829 Score: 51
Period size: 15 Copynumber: 6.3 Consensus size: 14
7085734 NNNNNNNTTT
* *
7085744 TTAAAATATAAATAA
1 TTAAATTATTAAT-A
7085759 TTAAATTA-TAA-A
1 TTAAATTATTAATA
7085771 -TAAA-TATTAATA
1 TTAAATTATTAATA
7085783 TTTAAATTATTAATTA
1 -TTAAATTATTAA-TA
7085799 TTAATATT-TTAA-A
1 TTAA-ATTATTAATA
*
7085812 -TAAATTATCAATTA
1 TTAAATTATTAA-TA
7085826 TTAA
1 TTAA
7085830 TATTTTTAAA
Statistics
Matches: 57, Mismatches: 3, Indels: 22
0.70 0.04 0.27
Matches are distributed among these distances:
10 2 0.04
11 10 0.18
12 8 0.14
13 1 0.02
14 7 0.12
15 24 0.42
16 5 0.09
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.45
Consensus pattern (14 bp):
TTAAATTATTAATA
Found at i:7085824 original size:27 final size:29
Alignment explanation
Indices: 7085785--7085844 Score: 97
Period size: 27 Copynumber: 2.1 Consensus size: 29
7085775 TATTAATATT
*
7085785 TAAATTATTAATTATTAATA-TTTT-AAA
1 TAAATTATCAATTATTAATATTTTTAAAA
7085812 TAAATTATCAATTATTAATATTTTTAAAA
1 TAAATTATCAATTATTAATATTTTTAAAA
7085841 TAAA
1 TAAA
7085845 ATAAAATAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
27 19 0.63
28 4 0.13
29 7 0.23
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (29 bp):
TAAATTATCAATTATTAATATTTTTAAAA
Found at i:7085906 original size:15 final size:15
Alignment explanation
Indices: 7085883--7085943 Score: 58
Period size: 15 Copynumber: 4.3 Consensus size: 15
7085873 TTAAATTAAA
* *
7085883 TAAAATATTAAGATT
1 TAAATTATTAATATT
7085898 TAAATTATTAATATT
1 TAAATTATTAATATT
7085913 T---TTATTAA-ATT
1 TAAATTATTAATATT
*
7085924 CTAGATTATTAATATT
1 -TAAATTATTAATATT
7085940 TAAA
1 TAAA
7085944 AAATCTAATA
Statistics
Matches: 38, Mismatches: 3, Indels: 10
0.75 0.06 0.20
Matches are distributed among these distances:
11 3 0.08
12 8 0.21
15 24 0.63
16 3 0.08
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (15 bp):
TAAATTATTAATATT
Found at i:7085918 original size:27 final size:27
Alignment explanation
Indices: 7085888--7085940 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
7085878 TTAAATAAAA
7085888 TATTAAGATT-TAAATTATTAATATTTT
1 TATTAA-ATTCTAAATTATTAATATTTT
*
7085915 TATTAAATTCTAGATTATTAATATTT
1 TATTAAATTCTAAATTATTAATATTT
7085941 AAAAAATCTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 3 0.12
27 21 0.88
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.55
Consensus pattern (27 bp):
TATTAAATTCTAAATTATTAATATTTT
Found at i:7085972 original size:18 final size:17
Alignment explanation
Indices: 7085943--7085980 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
7085933 TAATATTTAA
7085943 AAAATCTAATAAA-AAT
1 AAAATCTAATAAATAAT
7085959 AAAATCTCATATAAATAAT
1 AAAATCT-A-ATAAATAAT
7085978 AAA
1 AAA
7085981 GGGTGTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 7 0.37
17 1 0.05
18 5 0.26
19 6 0.32
ACGTcount: A:0.66, C:0.08, G:0.00, T:0.26
Consensus pattern (17 bp):
AAAATCTAATAAATAAT
Found at i:7087214 original size:45 final size:45
Alignment explanation
Indices: 7087165--7087357 Score: 215
Period size: 45 Copynumber: 4.3 Consensus size: 45
7087155 ATGGCACGTC
* * * * *
7087165 ACAACCTAATCATGGTGTGTCACATGTTTTTGTAAATGACGTGTA
1 ACAACCTAACCATAGCGTGTCACATATTTTTGTACATGACGTGTA
* ** * * * *
7087210 ACAACTTAATTATAACGTATCACATATTTTTGTACAGGATGTGTA
1 ACAACCTAACCATAGCGTGTCACATATTTTTGTACATGACGTGTA
* *
7087255 ACAACCTAACCATAGTGTGTCACATATTTTTGTACATGGCGTGTA
1 ACAACCTAACCATAGCGTGTCACATATTTTTGTACATGACGTGTA
* * *
7087300 ACAACCTAACCATAGCATGTCACATGTTTTTATACATGACGTGTA
1 ACAACCTAACCATAGCGTGTCACATATTTTTGTACATGACGTGTA
* *
7087345 ATAATCTAACCAT
1 ACAACCTAACCAT
7087358 GGCATGTAAC
Statistics
Matches: 122, Mismatches: 26, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 122 1.00
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.34
Consensus pattern (45 bp):
ACAACCTAACCATAGCGTGTCACATATTTTTGTACATGACGTGTA
Found at i:7087408 original size:24 final size:24
Alignment explanation
Indices: 7087381--7087426 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
7087371 CTAATAATAA
*
7087381 CATGTCATATGTTTTTGTACATAG
1 CATGTAATATGTTTTTGTACATAG
7087405 CATGTAATATGTTTTTGTACAT
1 CATGTAATATGTTTTTGTACAT
7087427 GACTTAGCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.26, C:0.11, G:0.15, T:0.48
Consensus pattern (24 bp):
CATGTAATATGTTTTTGTACATAG
Found at i:7087411 original size:66 final size:66
Alignment explanation
Indices: 7087289--7087413 Score: 171
Period size: 66 Copynumber: 1.9 Consensus size: 66
7087279 TATTTTTGTA
* * * *
7087289 CATGGCGTGTAACAACCTAACCATAGCATGTCACATGTTTTTATACATGACGTGTAATAATCTAA
1 CATGGCATGTAACAACCTAACAATAACATGTCACATGTTTTTATACATGACATGTAATAATCTAA
7087354 C
66 C
* * *
7087355 CATGGCATGTAACAACCTAATAATAACATGTCATATGTTTTTGTACAT-AGCATGTAATA
1 CATGGCATGTAACAACCTAACAATAACATGTCACATGTTTTTATACATGA-CATGTAATA
7087414 TGTTTTTGTA
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
65 1 0.02
66 50 0.98
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.32
Consensus pattern (66 bp):
CATGGCATGTAACAACCTAACAATAACATGTCACATGTTTTTATACATGACATGTAATAATCTAA
C
Found at i:7088162 original size:37 final size:36
Alignment explanation
Indices: 7088121--7088193 Score: 85
Period size: 37 Copynumber: 2.0 Consensus size: 36
7088111 AGCGAATCTA
*
7088121 AATGTTGAAA-TTCAAGAGTGAAGTAAAATTTGGAAAT
1 AATGTTAAAACTTCAA-AGTGAAGTAAAATTT-GAAAT
* * *
7088158 AATGTTAAAACTTCTAAGTGATGTGAAATTTGAAAT
1 AATGTTAAAACTTCAAAGTGAAGTAAAATTTGAAAT
7088194 TGGTGTGATA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
36 5 0.16
37 22 0.71
38 4 0.13
ACGTcount: A:0.44, C:0.04, G:0.19, T:0.33
Consensus pattern (36 bp):
AATGTTAAAACTTCAAAGTGAAGTAAAATTTGAAAT
Found at i:7089278 original size:41 final size:41
Alignment explanation
Indices: 7089233--7089355 Score: 174
Period size: 41 Copynumber: 3.0 Consensus size: 41
7089223 TCTCAGTTCT
* *
7089233 TTTGGACCTCAAGATTATATCGTAACGTCCCAATCCTTTAA
1 TTTGGACCTCAAGATTATATCGTTACGTCCCAGTCCTTTAA
* * *
7089274 TTTGGACCCCAAGATTATGTCGTTACGTCCCAGTCCTTTCA
1 TTTGGACCTCAAGATTATATCGTTACGTCCCAGTCCTTTAA
*
7089315 TTTGGACATCAAGATTATATGTCGTTACGTCCCAGTCCTTT
1 TTTGGACCTCAAGATTATA--TCGTTACGTCCCAGTCCTTT
7089356 TGGACCTCAA
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
41 52 0.72
43 20 0.28
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (41 bp):
TTTGGACCTCAAGATTATATCGTTACGTCCCAGTCCTTTAA
Found at i:7091267 original size:37 final size:38
Alignment explanation
Indices: 7091217--7091392 Score: 102
Period size: 37 Copynumber: 4.7 Consensus size: 38
7091207 CAAATAAAGA
*
7091217 GAATGACGTTAAAATTCTCAAGTGAAGA-AAAATTTGG
1 GAATGATGTTAAAATTCTCAAGTGAAGATAAAATTTGG
* * *
7091254 GAATGATGTTAAAATCTTTCAAGT-AACATGAAATTT--
1 GAATGATGTTAAAAT-TCTCAAGTGAAGATAAAATTTGG
* * * *
7091290 GAAAG-TGGT-AACTT-TCAAGT-AATATAAAA-TTGG
1 GAATGATGTTAAAATTCTCAAGTGAAGATAAAATTTGG
* * * * *
7091323 GAAGTGAGTGATGTTTAAATTTTCAAGTGAAGA-GACATTTGA
1 G-A---A-TGATGTTAAAATTCTCAAGTGAAGATAAAATTTGG
*
7091365 GAATGACGTTAAAATTCTCAAGTGAAGA
1 GAATGATGTTAAAATTCTCAAGTGAAGA
7091393 GAAACCTGGG
Statistics
Matches: 106, Mismatches: 19, Indels: 28
0.69 0.12 0.18
Matches are distributed among these distances:
31 2 0.02
32 13 0.12
33 2 0.02
34 4 0.04
35 3 0.03
36 4 0.04
37 40 0.38
38 15 0.14
39 3 0.03
40 4 0.04
41 9 0.08
42 7 0.07
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.31
Consensus pattern (38 bp):
GAATGATGTTAAAATTCTCAAGTGAAGATAAAATTTGG
Found at i:7091408 original size:37 final size:37
Alignment explanation
Indices: 7091339--7091427 Score: 90
Period size: 37 Copynumber: 2.4 Consensus size: 37
7091329 AGTGATGTTT
* * ** *
7091339 AAATTTTCAAGTGAAGAGACATTTGAGAATGACGTTA
1 AAATTCTCAAGTGAAGAGAAACCTGAGAATGACATTA
* *
7091376 AAATTCTCAAGTGAAGAGAAACCTGGGGATGACATTA
1 AAATTCTCAAGTGAAGAGAAACCTGAGAATGACATTA
7091413 ACAACTTC-CAAGTGA
1 A-AA-TTCTCAAGTGA
7091428 CGTGAAATTT
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
37 31 0.72
38 9 0.21
39 3 0.07
ACGTcount: A:0.40, C:0.13, G:0.21, T:0.25
Consensus pattern (37 bp):
AAATTCTCAAGTGAAGAGAAACCTGAGAATGACATTA
Found at i:7093572 original size:43 final size:43
Alignment explanation
Indices: 7093474--7093572 Score: 112
Period size: 43 Copynumber: 2.3 Consensus size: 43
7093464 CATGCTATAG
* * *
7093474 CCACACTTAAGCCATGTGATATAAGTCATAATCATAATAGAAA
1 CCACAATTAACCCATGTGATATAAGTCATAATCATAATAAAAA
* **
7093517 CCATAAGCAACCCATGTGATATAAGTCATAA-CA-ACATCAAAAA
1 CCACAATTAACCCATGTGATATAAGTCATAATCATA-AT-AAAAA
7093560 CCACAATTAACCC
1 CCACAATTAACCC
7093573 TAATAACATA
Statistics
Matches: 45, Mismatches: 9, Indels: 4
0.78 0.16 0.07
Matches are distributed among these distances:
41 1 0.02
42 4 0.09
43 40 0.89
ACGTcount: A:0.45, C:0.24, G:0.09, T:0.21
Consensus pattern (43 bp):
CCACAATTAACCCATGTGATATAAGTCATAATCATAATAAAAA
Found at i:7095793 original size:13 final size:13
Alignment explanation
Indices: 7095775--7095799 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7095765 ATTTGTAAAA
7095775 ATTTTATAAAATT
1 ATTTTATAAAATT
7095788 ATTTTATAAAAT
1 ATTTTATAAAAT
7095800 CTCATTTTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATTTTATAAAATT
Found at i:7096845 original size:24 final size:26
Alignment explanation
Indices: 7096798--7096847 Score: 77
Period size: 24 Copynumber: 2.0 Consensus size: 26
7096788 GGCTTAATAA
7096798 AATATTATTATTTTATTTACTTTTTG
1 AATATTATTATTTTATTTACTTTTTG
*
7096824 AATATT-TTATTTT-TTTATTTTTTG
1 AATATTATTATTTTATTTACTTTTTG
7096848 TAGCCATCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 10 0.43
25 7 0.30
26 6 0.26
ACGTcount: A:0.24, C:0.02, G:0.04, T:0.70
Consensus pattern (26 bp):
AATATTATTATTTTATTTACTTTTTG
Found at i:7100681 original size:47 final size:46
Alignment explanation
Indices: 7100628--7100945 Score: 257
Period size: 47 Copynumber: 6.8 Consensus size: 46
7100618 GTTGGAAATG
* * * *
7100628 TGTGAGACAGCACCGCTCAGAGTTGGTGAGACGCCATGGAGGGAATC
1 TGTGAGAC-GCACAGTTAAGAGTTGGTGACACGCCATGGAGGGAATC
* * *
7100675 TGTGAGACGCCAGAGTTAAGAGTTGGTGACACGCCATGGTGGGAATG
1 TGTGAGACG-CACAGTTAAGAGTTGGTGACACGCCATGGAGGGAATC
* * *
7100722 TGTGACACG-ACAGCGTTGAGAGTTGGTGAGACGCCATGGAGGGAATC
1 TGTGAGACGCACA--GTTAAGAGTTGGTGACACGCCATGGAGGGAATC
* * * *
7100769 TGTGACATGC-CAGATTAAGAGTTGGTGACACGGCACGGAGGGAATC
1 TGTGAGACGCACAG-TTAAGAGTTGGTGACACGCCATGGAGGGAATC
* * * * **
7100815 TGTGACACGC-CAGCATTCAG-GATTGGTGAGACGCTATGGATTGAATC
1 TGTGAGACGCACAG--TTAAGAG-TTGGTGACACGCCATGGAGGGAATC
* * * *
7100862 TGTTAGACGCTAGAGTTAAGAGTTAGTGACACACCATGGAGGGAATC
1 TGTGAGACGC-ACAGTTAAGAGTTGGTGACACGCCATGGAGGGAATC
* * * * *
7100909 TGTGACATGCCAGAGTTCAGAGTCGGTGACACGCCAT
1 TGTGAGACG-CACAGTTAAGAGTTGGTGACACGCCAT
7100946 AGTCATGTTT
Statistics
Matches: 217, Mismatches: 43, Indels: 22
0.77 0.15 0.08
Matches are distributed among these distances:
45 3 0.01
46 42 0.19
47 168 0.77
48 2 0.01
49 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.34, T:0.21
Consensus pattern (46 bp):
TGTGAGACGCACAGTTAAGAGTTGGTGACACGCCATGGAGGGAATC
Found at i:7100760 original size:94 final size:94
Alignment explanation
Indices: 7100644--7100945 Score: 401
Period size: 94 Copynumber: 3.2 Consensus size: 94
7100634 ACAGCACCGC
7100644 TCAGAGTTGGTGAGACGCCATGGAGGGAATCTGTGAGACGCCAGAGTTAAGAGTTGGTGACACGC
1 TCAGAGTTGGTGAGACGCCATGGAGGGAATCTGTGAGACGCCAGAGTTAAGAGTTGGTGACACGC
* * *
7100709 CATGGTGGGAATGTGTGACACGACAGCGT
66 CATGGAGGGAATCTGTGACACGCCAGCGT
* * * *
7100738 TGAGAGTTGGTGAGACGCCATGGAGGGAATCTGTGACATGCCAGA-TTAAGAGTTGGTGACACGG
1 TCAGAGTTGGTGAGACGCCATGGAGGGAATCTGTGAGACGCCAGAGTTAAGAGTTGGTGACACGC
* *
7100802 CACGGAGGGAATCTGTGACACGCCAGCAT
66 CATGGAGGGAATCTGTGACACGCCAGCGT
* ** * * * *
7100831 TCAG-GATTGGTGAGACGCTATGGATTGAATCTGTTAGACGCTAGAGTTAAGAGTTAGTGACACA
1 TCAGAG-TTGGTGAGACGCCATGGAGGGAATCTGTGAGACGCCAGAGTTAAGAGTTGGTGACACG
* *
7100895 CCATGGAGGGAATCTGTGACATGCCAGAGT
65 CCATGGAGGGAATCTGTGACACGCCAGCGT
* *
7100925 TCAGAGTCGGTGACACGCCAT
1 TCAGAGTTGGTGAGACGCCAT
7100946 AGTCATGTTT
Statistics
Matches: 178, Mismatches: 27, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
92 1 0.01
93 77 0.43
94 99 0.56
95 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.34, T:0.22
Consensus pattern (94 bp):
TCAGAGTTGGTGAGACGCCATGGAGGGAATCTGTGAGACGCCAGAGTTAAGAGTTGGTGACACGC
CATGGAGGGAATCTGTGACACGCCAGCGT
Found at i:7100899 original size:140 final size:141
Alignment explanation
Indices: 7100646--7100944 Score: 365
Period size: 140 Copynumber: 2.1 Consensus size: 141
7100636 AGCACCGCTC
* * *
7100646 AGAGTTGGTGAGACGCCATGGAGGGAATCTGTGAGACGCCAGAGTTAAGAGTTGGTGACACGCCA
1 AGAGTTGGTGACACGCCACGGAGGGAATCTGTGACACGCCAGAGTTAAGAGTTGGTGACACGCCA
* * * * * *
7100711 TGGTGGGAATGTGTGACACGACAGCGTTGAGAGTTGGTGAGACGCCATGGAGGGAATCTGTGACA
66 TGGTGGGAATCTGTGACACGACAGAGTTAAGAGTTAGTGACACACCATGGAGGGAATCTGTGACA
7100776 TGCCAGA-TTA
131 TGCCAGAGTTA
* * *
7100786 AGAGTTGGTGACACGGCACGGAGGGAATCTGTGACACGCCAGCA-TTCAG-GATTGGTGAGACGC
1 AGAGTTGGTGACACGCCACGGAGGGAATCTGTGACACGCCAG-AGTTAAGAG-TTGGTGACACGC
* * * *
7100849 TATGGAT-TGAATCTGTTAGACG-CTAGAGTTAAGAGTTAGTGACACACCATGGAGGGAATCTGT
64 CATGG-TGGGAATCTGTGACACGAC-AGAGTTAAGAGTTAGTGACACACCATGGAGGGAATCTGT
*
7100912 GACATGCCAGAGTTC
127 GACATGCCAGAGTTA
*
7100927 AGAGTCGGTGACACGCCA
1 AGAGTTGGTGACACGCCA
7100945 TAGTCATGTT
Statistics
Matches: 135, Mismatches: 19, Indels: 9
0.83 0.12 0.06
Matches are distributed among these distances:
139 2 0.01
140 113 0.84
141 20 0.15
ACGTcount: A:0.27, C:0.17, G:0.34, T:0.21
Consensus pattern (141 bp):
AGAGTTGGTGACACGCCACGGAGGGAATCTGTGACACGCCAGAGTTAAGAGTTGGTGACACGCCA
TGGTGGGAATCTGTGACACGACAGAGTTAAGAGTTAGTGACACACCATGGAGGGAATCTGTGACA
TGCCAGAGTTA
Found at i:7101011 original size:53 final size:52
Alignment explanation
Indices: 7100935--7101053 Score: 150
Period size: 53 Copynumber: 2.3 Consensus size: 52
7100925 TCAGAGTCGG
* * * *
7100935 TGACACGCCATAGTCATGTTTAGAGTG-TGTGACATGGCATTGCTTGAAAAGT
1 TGACACGCCATGGTCATGTTTAGAGTGCT-TGACACGGCAGTGCTTGAAAAGC
**
7100987 TGACACGCCATGGTCATGGTTTAGAGTGCTTGACACGGCAGTGCTTGAGCAGC
1 TGACACGCCATGGTCAT-GTTTAGAGTGCTTGACACGGCAGTGCTTGAAAAGC
*
7101040 TGACACGTCATGGT
1 TGACACGCCATGGT
7101054 TTGAAATAGA
Statistics
Matches: 58, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
52 16 0.28
53 41 0.71
54 1 0.02
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (52 bp):
TGACACGCCATGGTCATGTTTAGAGTGCTTGACACGGCAGTGCTTGAAAAGC
Found at i:7101543 original size:31 final size:31
Alignment explanation
Indices: 7101508--7101845 Score: 370
Period size: 31 Copynumber: 10.9 Consensus size: 31
7101498 TATTAGTGTA
* * * * *
7101508 TGACAGCATTTTACTTGATACGCATAGTGTG
1 TGACAGCATTTTACTTGTTATGCATGGCGTT
* * *
7101539 TGACAGCATTTTACTTGATATGCATGTCGTG
1 TGACAGCATTTTACTTGTTATGCATGGCGTT
* *
7101570 TCACAGAATTTTACTTGTTATGCATGGCGTT
1 TGACAGCATTTTACTTGTTATGCATGGCGTT
*
7101601 TGACAACATTTTACTTGTTATGCATGGCGTT
1 TGACAGCATTTTACTTGTTATGCATGGCGTT
* *
7101632 TGACAGCATTTTAATTGTTATGCATGGCATT
1 TGACAGCATTTTACTTGTTATGCATGGCGTT
* * *
7101663 TGACAGCATTTTACTTGATATGCATGTCGTG
1 TGACAGCATTTTACTTGTTATGCATGGCGTT
* *
7101694 TCACAGAATTTTACTTGTTATGCATGGCGTT
1 TGACAGCATTTTACTTGTTATGCATGGCGTT
*
7101725 TGACAGCATTTTACTTGTTATGCATGGCATT
1 TGACAGCATTTTACTTGTTATGCATGGCGTT
* * * *
7101756 TGACAGCATTTTACTTGATATGCATGACATG
1 TGACAGCATTTTACTTGTTATGCATGGCGTT
* * * * * * *
7101787 TCATAACCTTTAACTTGATATGCATGGCGTG
1 TGACAGCATTTTACTTGTTATGCATGGCGTT
* * * *
7101818 TCACACCGTTTAACTTGTTATGCATGGC
1 TGACAGCATTTTACTTGTTATGCATGGC
7101846 ATGTCACAAC
Statistics
Matches: 265, Mismatches: 42, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 265 1.00
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (31 bp):
TGACAGCATTTTACTTGTTATGCATGGCGTT
Found at i:7101584 original size:62 final size:62
Alignment explanation
Indices: 7101510--7101890 Score: 406
Period size: 62 Copynumber: 6.1 Consensus size: 62
7101500 TTAGTGTATG
* * * * * *
7101510 ACAGCATTTTACTTGATACGCATAGTGTGTGACAGCATTTTACTTGATATGCATGTCGTGTC
1 ACAGCATTTTACTTGTTATGCATGGCGTTTGACAGCATTTTACTTGATATGCATGGCGTGTC
* * * * *
7101572 ACAGAATTTTACTTGTTATGCATGGCGTTTGACAACATTTTACTTGTTATGCATGGCGTTTG
1 ACAGCATTTTACTTGTTATGCATGGCGTTTGACAGCATTTTACTTGATATGCATGGCGTGTC
* * *
7101634 ACAGCATTTTAATTGTTATGCATGGCATTTGACAGCATTTTACTTGATATGCATGTCGTGTC
1 ACAGCATTTTACTTGTTATGCATGGCGTTTGACAGCATTTTACTTGATATGCATGGCGTGTC
* * * * *
7101696 ACAGAATTTTACTTGTTATGCATGGCGTTTGACAGCATTTTACTTGTTATGCATGGCATTTG
1 ACAGCATTTTACTTGTTATGCATGGCGTTTGACAGCATTTTACTTGATATGCATGGCGTGTC
* * * * * * * * *
7101758 ACAGCATTTTACTTGATATGCATGACATGTCATAACCTTTAACTTGATATGCATGGCGTGTC
1 ACAGCATTTTACTTGTTATGCATGGCGTTTGACAGCATTTTACTTGATATGCATGGCGTGTC
* * * * * * *
7101820 ACACCGTTTAACTTGTTATGCATGGCATGTCACAACATTTTGA-TTGCA-ATGCATGGCGTGTC
1 ACAGCATTTTACTTGTTATGCATGGCGTTTGACAGCATTTT-ACTTG-ATATGCATGGCGTGTC
*
7101882 ACAACATTT
1 ACAGCATTT
7101891 ATTCCTTATT
Statistics
Matches: 266, Mismatches: 51, Indels: 4
0.83 0.16 0.01
Matches are distributed among these distances:
62 264 0.99
63 2 0.01
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (62 bp):
ACAGCATTTTACTTGTTATGCATGGCGTTTGACAGCATTTTACTTGATATGCATGGCGTGTC
Found at i:7101674 original size:93 final size:93
Alignment explanation
Indices: 7101514--7101890 Score: 420
Period size: 93 Copynumber: 4.1 Consensus size: 93
7101504 TGTATGACAG
* * * * * * * *
7101514 CATTTTACTTGATACGCATAGTGTGTGACAGCATTTTACTTGATATGCATGTCGTGTCACAGAAT
1 CATTTTACTTGATATGCATGGCGTGTGACAGCATTTTAATTGTTATGCATGGCATGTCACAGCAT
* * *
7101579 TTTACTTGTTATGCATGGCGTTTGACAA
66 TTTACTTGATATGCATGGCGTGTCACAA
* * * *
7101607 CATTTTACTTGTTATGCATGGCGTTTGACAGCATTTTAATTGTTATGCATGGCATTTGACAGCAT
1 CATTTTACTTGATATGCATGGCGTGTGACAGCATTTTAATTGTTATGCATGGCATGTCACAGCAT
*
7101672 TTTACTTGATATGCATGTCGTGTCACAGA
66 TTTACTTGATATGCATGGCGTGTCACA-A
* * * * *
7101701 -ATTTTACTTGTTATGCATGGCGTTTGACAGCATTTTACTTGTTATGCATGGCATTTGACAGCAT
1 CATTTTACTTGATATGCATGGCGTGTGACAGCATTTTAATTGTTATGCATGGCATGTCACAGCAT
* * *
7101765 TTTACTTGATATGCATGACATGTCATAA
66 TTTACTTGATATGCATGGCGTGTCACAA
* * * ** *
7101793 CCTTTAACTTGATATGCATGGCGTGTCACA-CCGTTTAACTTGTTATGCATGGCATGTCACAACA
1 CATTTTACTTGATATGCATGGCGTGTGACAGCATTTTAA-TTGTTATGCATGGCATGTCACAGCA
7101857 TTTTGA-TTGCA-ATGCATGGCGTGTCACAA
65 TTTT-ACTTG-ATATGCATGGCGTGTCACAA
7101886 CATTT
1 CATTT
7101891 ATTCCTTATT
Statistics
Matches: 244, Mismatches: 35, Indels: 10
0.84 0.12 0.03
Matches are distributed among these distances:
92 6 0.02
93 235 0.96
94 3 0.01
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (93 bp):
CATTTTACTTGATATGCATGGCGTGTGACAGCATTTTAATTGTTATGCATGGCATGTCACAGCAT
TTTACTTGATATGCATGGCGTGTCACAA
Found at i:7103735 original size:156 final size:155
Alignment explanation
Indices: 7103537--7104009 Score: 591
Period size: 156 Copynumber: 3.0 Consensus size: 155
7103527 CATAGTAATT
* * * * *
7103537 TATGCAATTGCAGTTTACGAAAGCGAGGACAGGTCCTCAAGCACCGATCGATCCAGC-CCAACCG
1 TATGTAATTGCAGTTTAGGAAA-CGACGACAGGTCCTGAAGCATCGATCGATCCAGCTCC-ACCG
7103601 CAGACAGCTAACGAGCCGGCGGTAAGGATATTAAAGTTGTAACGGTTAATGTTCAACAA-TTCTA
64 CAGACAGCTAACGAGCCGGCGGTAAGGATATTAAAGTTGTAACGGTTAATGTTCAACAATTTC-A
* *
7103665 AACATAATTATTGAATAACACAGTTATA
128 TACATGATTATTGAATAACACAGTTATA
* * ** *
7103693 TATGTAATTGCAGTTTATGGAAACGACAACAGGTCCTGAAGCATCTATC-AGTCTGGCTCCATCG
1 TATGTAATTGCAGTTTA-GGAAACGACGACAGGTCCTGAAGCATCGATCGA-TCCAGCTCCACCG
* * * *
7103757 CAAACTGCTAACGAG-CGGACGGTAAAGATATTAAAGTTGTAACAGTTAATGTTCAACAATTTCA
64 CAGACAGCTAACGAGCCGG-CGGTAAGGATATTAAAGTTGTAACGGTTAATGTTCAACAATTTCA
*
7103821 TACATGATTATTGAATAACACAGTTAAA
128 TACATGATTATTGAATAACACAGTTATA
** * *
7103849 TATGTAATTGCAGTATGCGGAAGCGACGACAGGTCCTGAAGCATCGATCGGT-CAGGCTCCACCG
1 TATGTAATTGCAGT-TTAGGAAACGACGACAGGTCCTGAAGCATCGATCGATCCA-GCTCCACCG
* *
7103913 CAGACTA-CTAACGAGCC-GCTGGTTAGGATATTAAAGTTGTAACGGTTAATGTTCAATAATTTC
64 CAGAC-AGCTAACGAGCCGGC-GGTAAGGATATTAAAGTTGTAACGGTTAATGTTCAACAATTTC
*
7103976 ATATATGATTATTGAATAACACAGTTATA
127 ATACATGATTATTGAATAACACAGTTATA
7104005 TATGT
1 TATGT
7104010 TATTATAGTT
Statistics
Matches: 272, Mismatches: 34, Indels: 22
0.83 0.10 0.07
Matches are distributed among these distances:
155 5 0.02
156 256 0.94
157 11 0.04
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.27
Consensus pattern (155 bp):
TATGTAATTGCAGTTTAGGAAACGACGACAGGTCCTGAAGCATCGATCGATCCAGCTCCACCGCA
GACAGCTAACGAGCCGGCGGTAAGGATATTAAAGTTGTAACGGTTAATGTTCAACAATTTCATAC
ATGATTATTGAATAACACAGTTATA
Found at i:7104413 original size:31 final size:31
Alignment explanation
Indices: 7104375--7104626 Score: 201
Period size: 31 Copynumber: 8.1 Consensus size: 31
7104365 GTAAGCTTTA
*
7104375 GCGTGTCACAATATTTTACTTGTTATTCATG
1 GCGTGTCACAACATTTTACTTGTTATTCATG
* *
7104406 GCGTGTCACAACGTTTGA-TT-TTCATATGCATG
1 GCGTGTCACAACATTTTACTTGTT-AT-T-CATG
* * * * *
7104438 GCGTGTTAGAACATTTTGCTTGTTATCCTTG
1 GCGTGTCACAACATTTTACTTGTTATTCATG
* * *
7104469 GCGTGTCACCA-AGTTTATCTTGTTATGCATG
1 GCGTGTCACAACATTTTA-CTTGTTATTCATG
*
7104500 GCGTGTCACAACATTTTAATTGTT-TTGCATG
1 GCGTGTCACAACATTTTACTTGTTATT-CATG
* * * * *
7104531 GCTTGTCAGAACATTTTGCTTGTTATCCTTG
1 GCGTGTCACAACATTTTACTTGTTATTCATG
* * *
7104562 GCGTGTCACCA-AGTTTATCTTGTTATGCATG
1 GCGTGTCACAACATTTTA-CTTGTTATTCATG
* *
7104593 GTGTGTCACAACATTTTAATTGTT-TTGCATG
1 GCGTGTCACAACATTTTACTTGTTATT-CATG
7104624 GCG
1 GCG
7104627 NNNNNNNNNN
Statistics
Matches: 169, Mismatches: 40, Indels: 24
0.73 0.17 0.10
Matches are distributed among these distances:
29 2 0.01
30 14 0.08
31 119 0.70
32 28 0.17
33 4 0.02
34 2 0.01
ACGTcount: A:0.20, C:0.17, G:0.21, T:0.42
Consensus pattern (31 bp):
GCGTGTCACAACATTTTACTTGTTATTCATG
Found at i:7104562 original size:93 final size:93
Alignment explanation
Indices: 7104375--7104626 Score: 375
Period size: 93 Copynumber: 2.7 Consensus size: 93
7104365 GTAAGCTTTA
* * * * *
7104375 GCGTGTCACAATATTTTA-CTTGTTATTCATGGCGTGTCACAAC-GTTTGATT-TTCATATGCAT
1 GCGTGTCACCA-AGTTTATCTTGTTATGCATGGCGTGTCACAACATTTTAATTGTT--T-TGCAT
*
7104437 GGCGTGTTAGAACATTTTGCTTGTTATCCTTG
62 GGCGTGTCAGAACATTTTGCTTGTTATCCTTG
*
7104469 GCGTGTCACCAAGTTTATCTTGTTATGCATGGCGTGTCACAACATTTTAATTGTTTTGCATGGCT
1 GCGTGTCACCAAGTTTATCTTGTTATGCATGGCGTGTCACAACATTTTAATTGTTTTGCATGGCG
7104534 TGTCAGAACATTTTGCTTGTTATCCTTG
66 TGTCAGAACATTTTGCTTGTTATCCTTG
*
7104562 GCGTGTCACCAAGTTTATCTTGTTATGCATGGTGTGTCACAACATTTTAATTGTTTTGCATGGCG
1 GCGTGTCACCAAGTTTATCTTGTTATGCATGGCGTGTCACAACATTTTAATTGTTTTGCATGGCG
7104627 NNNNNNNNNN
Statistics
Matches: 146, Mismatches: 9, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
93 103 0.71
94 35 0.24
95 6 0.04
96 2 0.01
ACGTcount: A:0.20, C:0.17, G:0.21, T:0.42
Consensus pattern (93 bp):
GCGTGTCACCAAGTTTATCTTGTTATGCATGGCGTGTCACAACATTTTAATTGTTTTGCATGGCG
TGTCAGAACATTTTGCTTGTTATCCTTG
Found at i:7106359 original size:19 final size:20
Alignment explanation
Indices: 7106332--7106377 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 20
7106322 TACTTTGTAA
*
7106332 AATTATTTG-ATACACAATT
1 AATTTTTTGTATACACAATT
7106351 AATTTTTTGCTTATACACAATT
1 AATTTTTTG--TATACACAATT
7106373 AATTT
1 AATTT
7106378 GATACCAAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 8 0.35
22 15 0.65
ACGTcount: A:0.37, C:0.11, G:0.04, T:0.48
Consensus pattern (20 bp):
AATTTTTTGTATACACAATT
Found at i:7106993 original size:31 final size:30
Alignment explanation
Indices: 7106955--7107261 Score: 177
Period size: 31 Copynumber: 10.0 Consensus size: 30
7106945 ACACCAGAAC
* *
7106955 TTGTTATGCATGGCGGGTCAGAACAATTTAA
1 TTGTTATGCATGGCGTGTCACAAC-ATTTAA
* *
7106986 TTGTTATGCATGGCGTGTTACAACGTTTAA
1 TTGTTATGCATGGCGTGTCACAACATTTAA
* *
7107016 CTTGTTATGCATGGCGTGTCACAACCTTTTAC
1 -TTGTTATGCATGGCGTGTCACAA-CATTTAA
* * * **
7107048 TTGTTATGCATGGCATGTCAGAATATTTTGC
1 TTGTTATGCATGGCGTGTCACAACA-TTTAA
* * * * *
7107079 TCGTTATCCTTGGCGTGTCACCAA-GTTTATC
1 TTGTTATGCATGGCGTGTCA-CAACATTTA-A
* * *
7107110 TTATTATGCATGGCGTGTCACAACCTTTTAC
1 TTGTTATGCATGGCGTGTCACAA-CATTTAA
* *** **
7107141 TTGTTATGCATGGCATGTCATTTCATTTTTC
1 TTGTTATGCATGGCGTGTCACAACA-TTTAA
* * * * *
7107172 TTGTTATGAATGGCGTGTTATAATATTTTAT
1 TTGTTATGCATGGCGTGTCACAACA-TTTAA
* * ** *
7107203 TTGATATGCACGGCACGTCACAACATTTTAC
1 TTGTTATGCATGGCGTGTCACAACA-TTTAA
* *
7107234 TTATTATGCATGGCGTGTCTC-ACATTTA
1 TTGTTATGCATGGCGTGTCACAACATTTA
7107262 TTCCTTATTT
Statistics
Matches: 214, Mismatches: 54, Indels: 18
0.75 0.19 0.06
Matches are distributed among these distances:
29 4 0.02
30 15 0.07
31 184 0.86
32 11 0.05
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.40
Consensus pattern (30 bp):
TTGTTATGCATGGCGTGTCACAACATTTAA
Found at i:7107018 original size:62 final size:61
Alignment explanation
Indices: 7106952--7107261 Score: 228
Period size: 62 Copynumber: 5.0 Consensus size: 61
7106942 TACACACCAG
* * * *
7106952 AACTTGTTATGCATGGCGGGTCAGAACAATTTAATTGTTATGCATGGCGTGTTACAACGTTT
1 AACTTGTTATGCATGGCGTGTCA-AACAATTTACTTGTTATGCATGGCGTGTCACAACATTT
** * * *
7107014 AACTTGTTATGCATGGCGTGTCACAACCTTTTACTTGTTATGCATGGCATGTCAGAATATTT
1 AACTTGTTATGCATGGCGTGTCA-AACAATTTACTTGTTATGCATGGCGTGTCACAACATTT
** * * * * * *
7107076 TGCTCGTTATCCTTGGCGTGTC-ACCAAGTTTATCTTATTATGCATGGCGTGTCACAACCTTT
1 AACTTGTTATGCATGGCGTGTCAAACAA-TTTA-CTTGTTATGCATGGCGTGTCACAACATTT
* * ** * * * * * *
7107138 TACTTGTTATGCATGGCATGTCATTTCATTTTTCTTGTTATGAATGGCGTGTTATAATATTT
1 AACTTGTTATGCATGGCGTGTCA-AACAATTTACTTGTTATGCATGGCGTGTCACAACATTT
* * * * ** * * *
7107200 TATTTGATATGCACGGCACGTCACAACATTTTACTTATTATGCATGGCGTGTCTC-ACATTT
1 AACTTGTTATGCATGGCGTGTCA-AACAATTTACTTGTTATGCATGGCGTGTCACAACATTT
7107261 A
1 A
7107262 TTCCTTATTT
Statistics
Matches: 191, Mismatches: 53, Indels: 9
0.75 0.21 0.04
Matches are distributed among these distances:
60 2 0.01
61 9 0.05
62 175 0.92
63 3 0.02
64 2 0.01
ACGTcount: A:0.23, C:0.18, G:0.19, T:0.40
Consensus pattern (61 bp):
AACTTGTTATGCATGGCGTGTCAAACAATTTACTTGTTATGCATGGCGTGTCACAACATTT
Found at i:7107186 original size:93 final size:92
Alignment explanation
Indices: 7106953--7107252 Score: 309
Period size: 93 Copynumber: 3.2 Consensus size: 92
7106943 ACACACCAGA
** * * ** *
7106953 ACTTGTTATGCATGGCGGGTCAGAACAATTTAATTGTTATGCATGGCGTGTTACAACGTTTAACT
1 ACTTGTTATGCATGGCATGTCAGAATATTTTGCTTGTTATGCATGGCGTGTTACAA-GTTTATCT
*
7107018 TGTTATGCATGGCGTGTCACAACCTTTT
65 TATTATGCATGGCGTGTCACAACCTTTT
* * * *
7107046 ACTTGTTATGCATGGCATGTCAGAATATTTTGCTCGTTATCCTTGGCGTGTCACCAAGTTTATCT
1 ACTTGTTATGCATGGCATGTCAGAATATTTTGCTTGTTATGCATGGCGTGTTA-CAAGTTTATCT
7107111 TATTATGCATGGCGTGTCACAACCTTTT
65 TATTATGCATGGCGTGTCACAACCTTTT
** * * * *
7107139 ACTTGTTATGCATGGCATGTCA-TTTCATTTTTCTTGTTATGAATGGCGTGTTATAATATTTTAT
1 ACTTGTTATGCATGGCATGTCAGAAT-ATTTTGCTTGTTATGCATGGCGTGTTA-CA-AGTTTAT
* ** *
7107203 -TTGA-TATGCACGGCACGTCACAACATTTT
63 CTT-ATTATGCATGGCGTGTCACAACCTTTT
* *
7107232 ACTTATTATGCATGGCGTGTC
1 ACTTGTTATGCATGGCATGTC
7107253 TCACATTTAT
Statistics
Matches: 174, Mismatches: 29, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
92 1 0.01
93 163 0.94
94 10 0.06
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.40
Consensus pattern (92 bp):
ACTTGTTATGCATGGCATGTCAGAATATTTTGCTTGTTATGCATGGCGTGTTACAAGTTTATCTT
ATTATGCATGGCGTGTCACAACCTTTT
Found at i:7110773 original size:31 final size:31
Alignment explanation
Indices: 7110730--7110809 Score: 99
Period size: 31 Copynumber: 2.6 Consensus size: 31
7110720 TTTGTCAGTC
*
7110730 ATGTTGTTACACGCCATGCAAAT-AACGTAAA
1 ATGTTGTAACACGCCATGCAAATCAA-GTAAA
* *
7110761 ATGTTGTAACACGCCATGCATATCAAGTCAA
1 ATGTTGTAACACGCCATGCAAATCAAGTAAA
* *
7110792 ATGTCGTGACACGCCATG
1 ATGTTGTAACACGCCATG
7110810 AATCAATATC
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
31 41 0.95
32 2 0.05
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.25
Consensus pattern (31 bp):
ATGTTGTAACACGCCATGCAAATCAAGTAAA
Found at i:7110821 original size:23 final size:23
Alignment explanation
Indices: 7110795--7110853 Score: 82
Period size: 23 Copynumber: 2.6 Consensus size: 23
7110785 AAGTCAAATG
7110795 TCGTGACACGCCATGAATCAATA
1 TCGTGACACGCCATGAATCAATA
* * * *
7110818 TCGTTACACGCCATGCATCACTG
1 TCGTGACACGCCATGAATCAATA
7110841 TCGTGACACGCCA
1 TCGTGACACGCCA
7110854 ATCACTGTAA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.27, C:0.32, G:0.19, T:0.22
Consensus pattern (23 bp):
TCGTGACACGCCATGAATCAATA
Found at i:7110859 original size:20 final size:20
Alignment explanation
Indices: 7110793--7110861 Score: 57
Period size: 23 Copynumber: 3.1 Consensus size: 20
7110783 TCAAGTCAAA
*
7110793 TGTCGTGACACGCCATGAATCAA
1 TGTCGTGACACGCC---AATCAC
* *
7110816 TATCGTTACACGCCATGCATCAC
1 TGTCGTGACACGCCA---ATCAC
7110839 TGTCGTGACACGCCAATCAC
1 TGTCGTGACACGCCAATCAC
7110859 TGT
1 TGT
7110862 AATTACTGAC
Statistics
Matches: 38, Mismatches: 5, Indels: 9
0.73 0.10 0.17
Matches are distributed among these distances:
20 9 0.24
23 29 0.76
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (20 bp):
TGTCGTGACACGCCAATCAC
Found at i:7110960 original size:55 final size:54
Alignment explanation
Indices: 7110890--7111067 Score: 169
Period size: 55 Copynumber: 3.2 Consensus size: 54
7110880 CCAACATCCG
*
7110890 TGACACGCTAAAAACCCAAAAAATCAGTTAACCCACGACACACCAGGAACAACCA
1 TGACACGCT-AAAACCCAAAAAATCAGTTAACCCACAACACACCAGGAACAACCA
* * * * * * * * *
7110945 TGACACGCCACAAACCCATAAATTCAATTAACCCACCACACCCCAAGAATAGCCA
1 TGACACGCTA-AAACCCAAAAAATCAGTTAACCCACAACACACCAGGAACAACCA
* * * ** *
7111000 TGACACGCTAACAACCCAAATAA-CTAGTTAACCCACAACACGCCAGTAACAGTCG
1 TGACACGCTAA-AACCCAAAAAATC-AGTTAACCCACAACACACCAGGAACAACCA
7111055 TGACACGCTAAAA
1 TGACACGCTAAAA
7111068 TAACAGTTCA
Statistics
Matches: 99, Mismatches: 21, Indels: 7
0.78 0.17 0.06
Matches are distributed among these distances:
54 5 0.05
55 94 0.95
ACGTcount: A:0.43, C:0.34, G:0.11, T:0.12
Consensus pattern (54 bp):
TGACACGCTAAAACCCAAAAAATCAGTTAACCCACAACACACCAGGAACAACCA
Found at i:7112539 original size:42 final size:41
Alignment explanation
Indices: 7112421--7112548 Score: 129
Period size: 42 Copynumber: 3.1 Consensus size: 41
7112411 TTGTTCCACA
* * *
7112421 GTAAAAGAAAGTCAAATCCTTCTCTTCTCTTCCTTACAATCT
1 GTAAAAGAAAGTTAAAT-CTTCTCTTCTTTTCCTTAGAATCT
** * *
7112463 GTAAGGGAAA-TTTAA--TGCTCTTCTCTTTCC-TAGAATCT
1 GTAAAAGAAAGTTAAATCTTCTCTTCT-TTTCCTTAGAATCT
*
7112501 ATAAAAGAAAGTTAAATCTTTCTCTTCTTTTCCTTAGAATCT
1 GTAAAAGAAAGTTAAATC-TTCTCTTCTTTTCCTTAGAATCT
7112543 GTAAAA
1 GTAAAA
7112549 AAAATCCGAT
Statistics
Matches: 67, Mismatches: 13, Indels: 12
0.73 0.14 0.13
Matches are distributed among these distances:
38 22 0.33
39 8 0.12
41 8 0.12
42 29 0.43
ACGTcount: A:0.32, C:0.20, G:0.10, T:0.38
Consensus pattern (41 bp):
GTAAAAGAAAGTTAAATCTTCTCTTCTTTTCCTTAGAATCT
Found at i:7112571 original size:80 final size:80
Alignment explanation
Indices: 7112422--7112579 Score: 192
Period size: 80 Copynumber: 2.0 Consensus size: 80
7112412 TGTTCCACAG
*** ** *
7112422 TAAAAGAAAGTCAAATCCTTCTCTTCTCTTCCTTACAATCTGTAAGGGAAATTTAATGCTCTTCT
1 TAAAAGAAAGTCAAATCCTTCTCTTCTCTTCCTTACAATCTGTAAAAAAAATCCAATACTCTTCT
7112487 CTTTCCTAGAATCTA
66 CTTTCCTAGAATCTA
* * * * * *
7112502 TAAAAGAAAGTTAAATCTTTCTCTTCTTTTCCTTAGAATCTGTAAAAAAAATCCGATACT-TTTT
1 TAAAAGAAAGTCAAATCCTTCTCTTCTCTTCCTTACAATCTGTAAAAAAAATCCAATACTCTTCT
7112566 CCTTTCCTAGAATC
66 -CTTTCCTAGAATC
7112580 CGTAAGAAAA
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
79 3 0.05
80 62 0.95
ACGTcount: A:0.32, C:0.21, G:0.09, T:0.39
Consensus pattern (80 bp):
TAAAAGAAAGTCAAATCCTTCTCTTCTCTTCCTTACAATCTGTAAAAAAAATCCAATACTCTTCT
CTTTCCTAGAATCTA
Found at i:7114414 original size:13 final size:13
Alignment explanation
Indices: 7114396--7114420 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7114386 AAACGCAACG
7114396 AAAATAAATTTAA
1 AAAATAAATTTAA
7114409 AAAATAAATTTA
1 AAAATAAATTTA
7114421 CACCTCACCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
AAAATAAATTTAA
Found at i:7115089 original size:35 final size:34
Alignment explanation
Indices: 7115017--7115264 Score: 232
Period size: 35 Copynumber: 7.1 Consensus size: 34
7115007 TTACTTGTTT
* *
7115017 AATTTAATCAATTAGACCCAA-AACTTAATTAAAC
1 AATTTAATTAATTAGGCCCAATAA-TTAATTAAAC
* *
7115051 AATTTAATTAATTAAGCCCAACAATTGAATTAAAC
1 AATTTAATTAATTAGGCCCAATAATT-AATTAAAC
* * *
7115086 AATTTTAATCAACTAGGCCCAATGACTTAATTAAAC
1 AA-TTTAATTAATTAGGCCCAAT-AATTAATTAAAC
* ****
7115122 AAATTTAATCAATTAGGCCCAATAACTTAATTGTTT
1 -AATTTAATTAATTAGGCCCAATAA-TTAATTAAAC
*
7115158 AATTTAATTAATTAGGCACAATAACTTAATTAAAC
1 AATTTAATTAATTAGGCCCAATAA-TTAATTAAAC
* *
7115193 AATTTAATTAATTAAGCCCAATGATTTAATTAAAC
1 AATTTAATTAATTAGGCCCAAT-AATTAATTAAAC
** * *
7115228 AATTTAGCTAATTAGGCAC-A-ACTTAATTAAAC
1 AATTTAATTAATTAGGCCCAATAATTAATTAAAC
7115260 AATTT
1 AATTT
7115265 TAATCAGTGC
Statistics
Matches: 179, Mismatches: 28, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
32 16 0.09
34 21 0.12
35 87 0.49
36 50 0.28
37 5 0.03
ACGTcount: A:0.45, C:0.15, G:0.06, T:0.34
Consensus pattern (34 bp):
AATTTAATTAATTAGGCCCAATAATTAATTAAAC
Found at i:7115094 original size:70 final size:69
Alignment explanation
Indices: 7115017--7115264 Score: 272
Period size: 70 Copynumber: 3.6 Consensus size: 69
7115007 TTACTTGTTT
* *
7115017 AATTTAATCAATTAGACCCAA-AACTTAATTAAACAATTTAATTAATTAAGCCCAACAATTGAAT
1 AATTTAATCAATTAGGCCCAATAACTTAATTAAACAATTTAATTAATTAAGCCCAATAATT-AAT
7115081 TAAAC
65 TAAAC
* * * *
7115086 AATTTTAATCAACTAGGCCCAATGACTTAATTAAACAAATTTAATCAATTAGGCCCAATAACTTA
1 AA-TTTAATCAATTAGGCCCAATAACTTAATTAAAC-AATTTAATTAATTAAGCCCAATAA-TTA
****
7115151 ATTGTTT
63 ATTAAAC
* * *
7115158 AATTTAATTAATTAGGCACAATAACTTAATTAAACAATTTAATTAATTAAGCCCAATGATTTAAT
1 AATTTAATCAATTAGGCCCAATAACTTAATTAAACAATTTAATTAATTAAGCCCAAT-AATTAAT
7115223 TAAAC
65 TAAAC
* *
7115228 AATTT-AGCTAATTAGG--C-ACAACTTAATTAAACAATTT
1 AATTTAATC-AATTAGGCCCAATAACTTAATTAAACAATTT
7115265 TAATCAGTGC
Statistics
Matches: 149, Mismatches: 24, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
67 19 0.13
68 1 0.01
69 3 0.02
70 55 0.37
71 42 0.28
72 27 0.18
73 2 0.01
ACGTcount: A:0.45, C:0.15, G:0.06, T:0.34
Consensus pattern (69 bp):
AATTTAATCAATTAGGCCCAATAACTTAATTAAACAATTTAATTAATTAAGCCCAATAATTAATT
AAAC
Found at i:7126181 original size:34 final size:37
Alignment explanation
Indices: 7126142--7126221 Score: 87
Period size: 34 Copynumber: 2.3 Consensus size: 37
7126132 ACAACTATTG
7126142 TTTTTTCCAACAG-ATATACTTTTTACTC-TTT-TTT
1 TTTTTTCCAACAGCATATACTTTTTACTCATTTCTTT
** **
7126176 TTTTTT-GGAGTGCATATACTTTTTACTCATTTCTTT
1 TTTTTTCCAACAGCATATACTTTTTACTCATTTCTTT
*
7126212 TATTTTCCAA
1 TTTTTTCCAA
7126222 TATGGGATGG
Statistics
Matches: 35, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
33 2 0.06
34 21 0.60
35 3 0.09
36 8 0.23
37 1 0.03
ACGTcount: A:0.20, C:0.16, G:0.06, T:0.57
Consensus pattern (37 bp):
TTTTTTCCAACAGCATATACTTTTTACTCATTTCTTT
Found at i:7149348 original size:2 final size:2
Alignment explanation
Indices: 7149337--7149426 Score: 157
Period size: 2 Copynumber: 46.0 Consensus size: 2
7149327 ACCAATATTC
*
7149337 AT AT -T AT AT AT AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7149378 AT AT AT AT AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7149419 AT AT AT AT
1 AT AT AT AT
7149427 TATCAAGTGG
Statistics
Matches: 84, Mismatches: 2, Indels: 4
0.93 0.02 0.04
Matches are distributed among these distances:
1 2 0.02
2 82 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7152072 original size:4 final size:4
Alignment explanation
Indices: 7152063--7152117 Score: 110
Period size: 4 Copynumber: 13.8 Consensus size: 4
7152053 AAAGTGCAAT
7152063 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
7152111 ATAC ATA
1 ATAC ATA
7152118 TGACGTCTGA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 51 1.00
ACGTcount: A:0.51, C:0.24, G:0.00, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:7155652 original size:18 final size:18
Alignment explanation
Indices: 7155629--7155663 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7155619 GAAGAGAGGG
* *
7155629 AGACAAAGAGAGGTGCAT
1 AGACAAACAGAGATGCAT
7155647 AGACAAACAGAGATGCA
1 AGACAAACAGAGATGCA
7155664 GAGCTCAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.49, C:0.14, G:0.29, T:0.09
Consensus pattern (18 bp):
AGACAAACAGAGATGCAT
Found at i:7167051 original size:126 final size:127
Alignment explanation
Indices: 7166872--7167127 Score: 426
Period size: 126 Copynumber: 2.0 Consensus size: 127
7166862 AGATCTACTC
* *
7166872 ATTTCTCAATATACATAGCACACAGTCATCATTGAATAAACAAATCAACTGAATTTGACAACTTT
1 ATTTCTCAATATACATAACACACAGTCATCATTGAATAAACAAATCAACTGAATTTGACAACATT
* *
7166937 TAG-CATTCATTTTATATATGAAAAACAT-ATACTACTAGAAATTAGTAACTATTTTATATTG
66 TAGCCATTCATTTTACATAT-AAAAACATAATACTACTAGAAATTAATAACTATTTTATATTG
*
7166998 ATTTCTCAATATACATAACACACAGTCATCATTGAATAAACAAATCAATTGAATTTGACAACATT
1 ATTTCTCAATATACATAACACACAGTCATCATTGAATAAACAAATCAACTGAATTTGACAACATT
*
7167063 TAGCCATTCATTTTACATATAAAAAGATAAATACTACTAGAAATTAATAACTATTTTATATTG
66 TAGCCATTCATTTTACATATAAAAACAT-AATACTACTAGAAATTAATAACTATTTTATATTG
7167126 AT
1 AT
7167128 AAGATCTTTA
Statistics
Matches: 121, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
126 72 0.60
127 15 0.12
128 34 0.28
ACGTcount: A:0.43, C:0.15, G:0.07, T:0.35
Consensus pattern (127 bp):
ATTTCTCAATATACATAACACACAGTCATCATTGAATAAACAAATCAACTGAATTTGACAACATT
TAGCCATTCATTTTACATATAAAAACATAATACTACTAGAAATTAATAACTATTTTATATTG
Found at i:7176964 original size:8 final size:7
Alignment explanation
Indices: 7176951--7177022 Score: 56
Period size: 8 Copynumber: 9.4 Consensus size: 7
7176941 CATCCCCATT
7176951 TTTTTTGA
1 TTTTTT-A
7176959 TTTTTTA
1 TTTTTTA
*
7176966 TTTATTTT
1 TTT-TTTA
7176974 TTTTTTA
1 TTTTTTA
7176981 TTATTTTTA
1 -T-TTTTTA
*
7176990 TTATTATA
1 TT-TTTTA
7176998 TTTTTTA
1 TTTTTTA
7177005 TGTTTATT-
1 T-TTT-TTA
7177013 TTTTTTA
1 TTTTTTA
7177020 TTT
1 TTT
7177023 AGGTGTCTAC
Statistics
Matches: 53, Mismatches: 4, Indels: 15
0.74 0.06 0.21
Matches are distributed among these distances:
6 2 0.04
7 19 0.36
8 24 0.45
9 8 0.15
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.81
Consensus pattern (7 bp):
TTTTTTA
Found at i:7176993 original size:27 final size:30
Alignment explanation
Indices: 7176959--7177021 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
7176949 TTTTTTTTGA
7176959 TTTT-TTATT-TATTTTTT-T-TTTATTAT
1 TTTTATTATTATATTTTTTATGTTTATTAT
*
7176985 TTTTATTATTATATTTTTTATGTTTATTTT
1 TTTTATTATTATATTTTTTATGTTTATTAT
7177015 TTTTATT
1 TTTTATT
7177022 TAGGTGTCTA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
26 4 0.12
27 5 0.16
28 8 0.25
29 1 0.03
30 14 0.44
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.81
Consensus pattern (30 bp):
TTTTATTATTATATTTTTTATGTTTATTAT
Found at i:7177019 original size:15 final size:15
Alignment explanation
Indices: 7176948--7177022 Score: 80
Period size: 15 Copynumber: 4.9 Consensus size: 15
7176938 AGCCATCCCC
7176948 ATTTTTTTTGATTTTTT
1 ATTTTTTTT-A-TTTTT
7176965 ATTTATTTTT-TTTTT
1 ATTT-TTTTTATTTTT
* *
7176980 ATTATTTTTATTATT
1 ATTTTTTTTATTTTT
* *
7176995 ATATTTTTTATGTTT
1 ATTTTTTTTATTTTT
7177010 ATTTTTTTTATTT
1 ATTTTTTTTATTT
7177023 AGGTGTCTAC
Statistics
Matches: 48, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
14 5 0.10
15 34 0.71
17 4 0.08
18 5 0.10
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.80
Consensus pattern (15 bp):
ATTTTTTTTATTTTT
Found at i:7184245 original size:57 final size:57
Alignment explanation
Indices: 7184174--7184287 Score: 201
Period size: 57 Copynumber: 2.0 Consensus size: 57
7184164 TACGGTTTGT
*
7184174 GGATTTGAACTGAACTTTTCATTCATTCTTCTCACATTTGATGTTTATAGGTATGCC
1 GGATTTCAACTGAACTTTTCATTCATTCTTCTCACATTTGATGTTTATAGGTATGCC
* *
7184231 GGATTTCAACTGAACTTTTTATTCATTCTTCTCACATTTGATGTTTATATGTATGCC
1 GGATTTCAACTGAACTTTTCATTCATTCTTCTCACATTTGATGTTTATAGGTATGCC
7184288 ACATGTATTT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 54 1.00
ACGTcount: A:0.23, C:0.18, G:0.14, T:0.46
Consensus pattern (57 bp):
GGATTTCAACTGAACTTTTCATTCATTCTTCTCACATTTGATGTTTATAGGTATGCC
Found at i:7199705 original size:24 final size:24
Alignment explanation
Indices: 7199660--7199706 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
7199650 CTTCGAATCT
* * * *
7199660 CCGCCGCCAGTTCCTTCCCCGCCG
1 CCGCCGCCACTCCCATCACCGCCG
7199684 CCGCCGCCACTCCCATCACCGCC
1 CCGCCGCCACTCCCATCACCGCC
7199707 ACCAAATACA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.09, C:0.62, G:0.17, T:0.13
Consensus pattern (24 bp):
CCGCCGCCACTCCCATCACCGCCG
Found at i:7214756 original size:129 final size:129
Alignment explanation
Indices: 7214525--7214787 Score: 411
Period size: 129 Copynumber: 2.0 Consensus size: 129
7214515 AGTAGGAACA
* * *
7214525 TGATGGTGCTAGGTGTTTGCGTCTTTAAGCTAATTCATTGTAATTGATTTTTATCTGCCTGTTCC
1 TGATGGTGCTAGGTGTTTGCATCTTTAAGCTAAATCATTGT-ATTGATTCTTATCTGCCTGTTCC
* * *
7214590 TGCATCAAAGTCCTGGATACACTGACTGGCGTTTGTTGCCAATTCTAAACTAGGTTTCGTTTATC
65 TGCATCAAAGTCCTGGATACACTGACTGGCATTTGTTGCCAATTCTAAACTAGGTTTCATATATC
7214655 TGATGGTGCTAGGTGTTTGCATCTTTAAGCTAAATCATTGT-TTCGATTCTTATCTGCCTGTTCC
1 TGATGGTGCTAGGTGTTTGCATCTTTAAGCTAAATCATTGTATT-GATTCTTATCTGCCTGTTCC
* ** *
7214719 TGCATTAAAGTCCTGGATATGCTGACTGGCATTTGTTGCCAATTCTAAGCTAGGTTTCATATATC
65 TGCATCAAAGTCCTGGATACACTGACTGGCATTTGTTGCCAATTCTAAACTAGGTTTCATATATC
7214784 TGAT
1 TGAT
7214788 TTGATTTCTC
Statistics
Matches: 122, Mismatches: 10, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
128 2 0.02
129 81 0.66
130 39 0.32
ACGTcount: A:0.21, C:0.18, G:0.21, T:0.41
Consensus pattern (129 bp):
TGATGGTGCTAGGTGTTTGCATCTTTAAGCTAAATCATTGTATTGATTCTTATCTGCCTGTTCCT
GCATCAAAGTCCTGGATACACTGACTGGCATTTGTTGCCAATTCTAAACTAGGTTTCATATATC
Found at i:7227898 original size:6 final size:7
Alignment explanation
Indices: 7227881--7227906 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
7227871 TACATTACAA
7227881 AAAAAAG
1 AAAAAAG
7227888 AAAAAAG
1 AAAAAAG
7227895 AAAAAAG
1 AAAAAAG
7227902 AAAAA
1 AAAAA
7227907 CCACAGAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:7231813 original size:14 final size:14
Alignment explanation
Indices: 7231770--7231819 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
7231760 AATTTTTATT
* *
7231770 TTTATTTATAATTA
1 TTTATATATAAGTA
*
7231784 TTTATATATAATTA
1 TTTATATATAAGTA
7231798 TTTA-ATATATAGTA
1 TTTATATATA-AGTA
7231812 -TTATATAT
1 TTTATATAT
7231820 TTTCTTGTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
13 8 0.25
14 24 0.75
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (14 bp):
TTTATATATAAGTA
Found at i:7231815 original size:17 final size:14
Alignment explanation
Indices: 7231770--7231808 Score: 60
Period size: 14 Copynumber: 2.7 Consensus size: 14
7231760 AATTTTTATT
*
7231770 TTTATTTATAATTA
1 TTTATATATAATTA
7231784 TTTATATATAATTA
1 TTTATATATAATTA
7231798 TTTAATATATA
1 TTT-ATATATA
7231809 GTATTATATA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 16 0.70
15 7 0.30
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TTTATATATAATTA
Found at i:7239793 original size:33 final size:33
Alignment explanation
Indices: 7239756--7239952 Score: 117
Period size: 33 Copynumber: 6.0 Consensus size: 33
7239746 ATGTTATAAT
7239756 TAAAATAAAATATATAATATAAGAATTAAAAAA
1 TAAAATAAAATATATAATATAAGAATTAAAAAA
* * *
7239789 TAAAATAAAATAAAATAAAATAA-AATATAAGAAAT
1 TAAAATAAAAT-ATATAATATAAGAAT-TAA-AAAA
* *
7239824 TAAAAT---TTATATAATAT-AG-ATAAAAGAAA
1 TAAAATAAAATATATAATATAAGAATTAAA-AAA
* **
7239853 TTAAAATAAAATATATAATATAAAAAATTATATTAA
1 -TAAAATAAAATATATAATAT-AAGAATTA-AAAAA
* * *
7239889 -AAAATAAAA-ATATAAAATACAAAATTATAATAA
1 TAAAATAAAATATATAATATA-AGAATTA-AAAAA
* *
7239922 -AAAATAAAA-ATAAAATATATGATATTAAAAA
1 TAAAATAAAATATATAATATAAGA-ATTAAAAA
7239953 TATATTTAAG
Statistics
Matches: 129, Mismatches: 20, Indels: 31
0.72 0.11 0.17
Matches are distributed among these distances:
28 1 0.01
29 4 0.03
30 9 0.07
31 7 0.05
32 6 0.05
33 65 0.50
34 21 0.16
35 10 0.08
36 5 0.04
37 1 0.01
ACGTcount: A:0.69, C:0.01, G:0.03, T:0.28
Consensus pattern (33 bp):
TAAAATAAAATATATAATATAAGAATTAAAAAA
Found at i:7239884 original size:50 final size:48
Alignment explanation
Indices: 7239753--7239938 Score: 163
Period size: 50 Copynumber: 3.9 Consensus size: 48
7239743 GTAATGTTAT
* * * *
7239753 AATTAAAATAAAATATATAATATAAGAATTAAAAAATAAAATAAAATA
1 AATTAAAATAAAATATATAATATAAAAATTATATAATAAAATAAAAGA
* * * *
7239801 AAATAAAATAAAATATA-AGAAATTAAAATTTATATAATATAGATAAAAGA
1 AATTAAAATAAAATATATA-ATA-TAAAAATTATATAATA-AAATAAAAGA
7239851 AATTAAAATAAAATATATAATATAAAAAATTATATTAA-AAAATAAAA-A
1 AATTAAAATAAAATATATAATAT-AAAAATTATA-TAATAAAATAAAAGA
* *
7239899 TA-TAAAATACAAA-ATTATAATA-AAAAA-TA-AAAATAAAATA
1 AATTAAAATA-AAATA-TATAATATAAAAATTATATAATAAAATA
7239939 TATGATATTA
Statistics
Matches: 115, Mismatches: 14, Indels: 22
0.76 0.09 0.15
Matches are distributed among these distances:
43 2 0.02
44 7 0.06
45 2 0.02
46 5 0.04
47 9 0.08
48 30 0.26
49 20 0.17
50 36 0.31
51 4 0.03
ACGTcount: A:0.70, C:0.01, G:0.02, T:0.27
Consensus pattern (48 bp):
AATTAAAATAAAATATATAATATAAAAATTATATAATAAAATAAAAGA
Found at i:7239897 original size:5 final size:5
Alignment explanation
Indices: 7239756--7239865 Score: 66
Period size: 5 Copynumber: 22.4 Consensus size: 5
7239746 ATGTTATAAT
* * *
7239756 TAAAA TAAAA T-ATA TAATA TAAGAA T-TAA -AAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAA-AA TAAAA TAAAA TAAAA TAAAA TAAAA
* * * ** * * * *
7239804 TAAAA TAAAA TATAA GAAAT TAAAA T-TTA TATAA TATAGA TAAAA GAAAT
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TA-AAA TAAAA TAAAA
7239854 TAAAA TAAAA TA
1 TAAAA TAAAA TA
7239866 TATAATATAA
Statistics
Matches: 79, Mismatches: 20, Indels: 12
0.71 0.18 0.11
Matches are distributed among these distances:
4 9 0.11
5 65 0.82
6 5 0.06
ACGTcount: A:0.69, C:0.00, G:0.04, T:0.27
Consensus pattern (5 bp):
TAAAA
Found at i:7239899 original size:6 final size:6
Alignment explanation
Indices: 7239888--7239936 Score: 53
Period size: 6 Copynumber: 7.7 Consensus size: 6
7239878 AATTATATTA
* *
7239888 AAAAAT AAAAAT ATAAAAT ACAAAAT TATAAT AAAAAAT AAAAAT AAAA
1 AAAAAT AAAAAT A-AAAAT A-AAAAT AAAAAT -AAAAAT AAAAAT AAAA
7239937 TATATGATAT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
6 21 0.58
7 15 0.42
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (6 bp):
AAAAAT
Found at i:7239905 original size:13 final size:13
Alignment explanation
Indices: 7239889--7239956 Score: 59
Period size: 13 Copynumber: 5.1 Consensus size: 13
7239879 ATTATATTAA
7239889 AAAATAAAAATAT
1 AAAATAAAAATAT
7239902 AAAATACAAAAT-T
1 AAAATA-AAAATAT
*
7239915 ATAATAAAAA-AT
1 AAAATAAAAATAT
7239927 AAAAATAAAATATAT
1 -AAAATAAAA-ATAT
* *
7239942 GATATTAAAAATAT
1 -AAAATAAAAATAT
7239956 A
1 A
7239957 TTTAAGAGAT
Statistics
Matches: 45, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
12 5 0.11
13 21 0.47
14 10 0.22
15 9 0.20
ACGTcount: A:0.71, C:0.01, G:0.01, T:0.26
Consensus pattern (13 bp):
AAAATAAAAATAT
Found at i:7244457 original size:38 final size:38
Alignment explanation
Indices: 7244414--7244491 Score: 104
Period size: 38 Copynumber: 2.1 Consensus size: 38
7244404 GGTTAGTTAA
* * *
7244414 ATCTTATGATAC-CTCGCTATTGTTCTTTTTAGTTTCAC
1 ATCTTATGAT-CTCTCGCAATTGATCTTTGTAGTTTCAC
*
7244452 ATCTTATGATCTCTCTCAATTGATCTTTGTAGTTTCAC
1 ATCTTATGATCTCTCGCAATTGATCTTTGTAGTTTCAC
7244490 AT
1 AT
7244492 TTTCTTTGTA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
37 1 0.03
38 34 0.97
ACGTcount: A:0.21, C:0.21, G:0.10, T:0.49
Consensus pattern (38 bp):
ATCTTATGATCTCTCGCAATTGATCTTTGTAGTTTCAC
Found at i:7254556 original size:30 final size:30
Alignment explanation
Indices: 7254521--7254578 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
7254511 ATAATTAATC
*
7254521 ATAAAGATTT-TTTTGACTCAAAATAAAAGT
1 ATAAAGATTTATTTAG-CTCAAAATAAAAGT
7254551 ATAAAGATTTATTTAGCTCAAAATAAAA
1 ATAAAGATTTATTTAGCTCAAAATAAAA
7254579 ATACAAAGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.50, C:0.07, G:0.09, T:0.34
Consensus pattern (30 bp):
ATAAAGATTTATTTAGCTCAAAATAAAAGT
Found at i:7254728 original size:17 final size:17
Alignment explanation
Indices: 7254706--7254763 Score: 50
Period size: 17 Copynumber: 3.5 Consensus size: 17
7254696 AGTAATGCTC
7254706 ATGTATAAATTAAATAT
1 ATGTATAAATTAAATAT
*
7254723 ATGTATACA-TATAATAT
1 ATGTATAAATTA-AATAT
*
7254740 -T-TATACAATTATATAT
1 ATGTATA-AATTAAATAT
*
7254756 ATTTATAA
1 ATGTATAA
7254764 CATTTTATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 10
0.72 0.07 0.22
Matches are distributed among these distances:
15 4 0.12
16 8 0.24
17 17 0.52
18 4 0.12
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.45
Consensus pattern (17 bp):
ATGTATAAATTAAATAT
Found at i:7254773 original size:18 final size:18
Alignment explanation
Indices: 7254709--7254762 Score: 62
Period size: 15 Copynumber: 3.2 Consensus size: 18
7254699 AATGCTCATG
* *
7254709 TATA-AATTAAATATATG
1 TATACAATTATATATATT
7254726 TATAC-A-TATA-ATATT
1 TATACAATTATATATATT
7254741 TATACAATTATATATATT
1 TATACAATTATATATATT
7254759 TATA
1 TATA
7254763 ACATTTTATA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
15 9 0.29
16 4 0.13
17 9 0.29
18 9 0.29
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (18 bp):
TATACAATTATATATATT
Found at i:7255675 original size:114 final size:114
Alignment explanation
Indices: 7255473--7255700 Score: 280
Period size: 114 Copynumber: 2.0 Consensus size: 114
7255463 CTTAATATCA
* * * *
7255473 AGTTCTAAATACTCCAATTCATATTTCATATGTAATTTTAGAAAGATGGAAGGGTTTTAAAAAAG
1 AGTTCAAAATACTCCAATTCACATTTCATATGCAATTTTAAAAAGAT-GAAGGGTTTTAAAAAAG
* *** * * *
7255538 AACGAACGGTTTCTGTTTGAAAAAAAAAAA-AAGAAAGGAAATGAAAAAT
65 AACGAACGGTTTCTATAAAAAAAAAAAAAAGAAAAAAAGAAAGGAAAAAT
* *
7255587 AGTTCAAAATGCTCCAATTCACATTTCATATGCAATTTTAAAAAGAT-AACTGGTTTTAAAAAAG
1 AGTTCAAAATACTCCAATTCACATTTCATATGCAATTTTAAAAAGATGAA-GGGTTTTAAAAAAG
* *
7255651 AATGAAGGGTTTCTATCAAAAAAAAAAAAAAGAAAAAAAGAAAGGAAAAA
65 AACGAACGGTTTCTAT-AAAAAAAAAAAAAAGAAAAAAAGAAAGGAAAAA
7255701 AGAAAAAAAG
Statistics
Matches: 96, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
112 2 0.02
113 26 0.27
114 53 0.55
115 15 0.16
ACGTcount: A:0.50, C:0.09, G:0.15, T:0.26
Consensus pattern (114 bp):
AGTTCAAAATACTCCAATTCACATTTCATATGCAATTTTAAAAAGATGAAGGGTTTTAAAAAAGA
ACGAACGGTTTCTATAAAAAAAAAAAAAAGAAAAAAAGAAAGGAAAAAT
Found at i:7255729 original size:20 final size:18
Alignment explanation
Indices: 7255712--7255763 Score: 68
Period size: 19 Copynumber: 2.8 Consensus size: 18
7255702 GAAAAAAAGG
7255712 AAGATAAAGGGTTTAAAA
1 AAGATAAAGGGTTTAAAA
* *
7255730 AAAATGAAGGGTTTTAAAA
1 AAGATAAAGGG-TTTAAAA
7255749 AAGAATAAAGGGTTT
1 AAG-ATAAAGGGTTT
7255764 CTATAAAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
18 9 0.32
19 12 0.43
20 7 0.25
ACGTcount: A:0.52, C:0.00, G:0.23, T:0.25
Consensus pattern (18 bp):
AAGATAAAGGGTTTAAAA
Found at i:7255747 original size:19 final size:19
Alignment explanation
Indices: 7255715--7255773 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 19
7255705 AAAAAGGAAG
7255715 ATAAAGGG-TTTAAAAAAA
1 ATAAAGGGTTTTAAAAAAA
*
7255733 ATGAAGGGTTTTAAAAAAGA
1 ATAAAGGGTTTTAAAAAA-A
7255753 ATAAAGGGTTTCTATAAAAAA
1 ATAAAGGGTTT-TA-AAAAAA
7255774 GGAAAAAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
18 7 0.20
19 9 0.26
20 11 0.31
21 3 0.09
22 5 0.14
ACGTcount: A:0.54, C:0.02, G:0.19, T:0.25
Consensus pattern (19 bp):
ATAAAGGGTTTTAAAAAAA
Found at i:7255891 original size:7 final size:7
Alignment explanation
Indices: 7255879--7255917 Score: 53
Period size: 7 Copynumber: 5.7 Consensus size: 7
7255869 GGGTTCAATC
*
7255879 AAAAAGG
1 AAAAAGA
7255886 AAAAAGA
1 AAAAAGA
7255893 AAAAAGA
1 AAAAAGA
*
7255900 AAAGA-A
1 AAAAAGA
7255906 AAAAAGA
1 AAAAAGA
7255913 AAAAA
1 AAAAA
7255918 AAAGAATTGA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
6 5 0.18
7 23 0.82
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (7 bp):
AAAAAGA
Found at i:7255901 original size:13 final size:13
Alignment explanation
Indices: 7255879--7255920 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
7255869 GGGTTCAATC
*
7255879 AAAAAGGAAAAAG
1 AAAAAAGAAAAAG
7255892 AAAAAAG-AAAAG
1 AAAAAAGAAAAAG
7255904 AAAAAAAGAAAAA-
1 -AAAAAAGAAAAAG
7255917 AAAA
1 AAAA
7255921 GAATTGATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
12 9 0.35
13 13 0.50
14 4 0.15
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (13 bp):
AAAAAAGAAAAAG
Found at i:7255908 original size:18 final size:18
Alignment explanation
Indices: 7255886--7255923 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 18
7255876 ATCAAAAAGG
7255886 AAAAAGAAAAAAGAAAAGAA
1 AAAAAG-AAAAA-AAAAGAA
7255906 AAAAAGAAAAAAAAAGAA
1 AAAAAGAAAAAAAAAGAA
7255924 TTGATATTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 7 0.39
19 5 0.28
20 6 0.33
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (18 bp):
AAAAAGAAAAAAAAAGAA
Found at i:7255921 original size:211 final size:212
Alignment explanation
Indices: 7255521--7255918 Score: 517
Period size: 211 Copynumber: 1.9 Consensus size: 212
7255511 TAGAAAGATG
* *
7255521 GAAGGGTTTTAAAAAAGAACGAACGGTTTCTGTTTGAAAAAAAAAAAAAGAAAGGAAATGAAAAA
1 GAAGGGTTTTAAAAAAGAACAAACGGTTTC-GTATGAAAAAAAAAAAAAGAAAGGAAATGAAAAA
* * *
7255586 TAGTTCAAAATGCTCCAATTCACATTTCATATGCAATTTTAAAAAGATAACTGGTTTTAAAAAAG
65 TAGTTCAAAATGCTCCAATTCACATTTCATATGCAATTTTAAAAAGATAACGGGTTTAAAAAAAA
* *
7255651 AATGAAGGGTTTCTATCAAAAAAAAAAAAAAGAAAAAAAGAAAGGAAAAAAGAAAAAAAGGAAGA
130 AAAGAAGGGTTTCAATCAAAAAAAAAAAAAAGAAAAAAAGAAA-GAAAAAAGAAAAAAAGGAAGA
7255716 TAAAGGGTTTAAAAAAAAT
194 TAAAGGGTTTAAAAAAAAT
* * * *
7255735 GAAGGGTTTTAAAAAAGAATAAAGGGTTTC-TAT-AAAAAAGGAAAAAAA-AAGGGAAA-GTAAA
1 GAAGGGTTTTAAAAAAGAACAAACGGTTTCGTATGAAAAAA--AAAAAAAGAAAGGAAATGAAAA
* * *
7255796 ATAGTTCAAAATGCTCCAATTCATATTTTATATGTAATTTTAAAAAGATGAA-GGGTTTAAAAAA
64 ATAGTTCAAAATGCTCCAATTCACATTTCATATGCAATTTTAAAAAGAT-AACGGGTTTAAAAAA
**
7255860 AAAAAGAGAGGG-TTCAATC--AAAAAGGAAAAAG-AAAAAAGAAAAGAAAAAAAGAAAAAAA
128 AAAAAGA-AGGGTTTCAATCAAAAAAAAAAAAAAGAAAAAAAG-AAAG-AAAAAAGAAAAAAA
7255919 AAGAATTGAT
Statistics
Matches: 162, Mismatches: 16, Indels: 17
0.83 0.08 0.09
Matches are distributed among these distances:
208 8 0.05
209 28 0.17
211 77 0.48
212 15 0.09
213 7 0.04
214 27 0.17
ACGTcount: A:0.57, C:0.06, G:0.17, T:0.21
Consensus pattern (212 bp):
GAAGGGTTTTAAAAAAGAACAAACGGTTTCGTATGAAAAAAAAAAAAAGAAAGGAAATGAAAAAT
AGTTCAAAATGCTCCAATTCACATTTCATATGCAATTTTAAAAAGATAACGGGTTTAAAAAAAAA
AAGAAGGGTTTCAATCAAAAAAAAAAAAAAGAAAAAAAGAAAGAAAAAAGAAAAAAAGGAAGATA
AAGGGTTTAAAAAAAAT
Found at i:7256142 original size:20 final size:18
Alignment explanation
Indices: 7256103--7256143 Score: 55
Period size: 20 Copynumber: 2.2 Consensus size: 18
7256093 TAATATGCAA
7256103 TTTTAAAAAGATGAAAGG
1 TTTTAAAAAGATGAAAGG
*
7256121 TTTTAAAAATGAATGAAGGG
1 TTTTAAAAA-G-ATGAAAGG
7256141 TTT
1 TTT
7256144 CTATCAGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 9 0.45
19 1 0.05
20 10 0.50
ACGTcount: A:0.44, C:0.00, G:0.22, T:0.34
Consensus pattern (18 bp):
TTTTAAAAAGATGAAAGG
Found at i:7256183 original size:14 final size:15
Alignment explanation
Indices: 7256149--7256192 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
7256139 GGTTTCTATC
*
7256149 AGAAAAAAAAGATAAA
1 AGAAAAAAAAG-GAAA
7256165 AG-AAAAAAAGGAAA
1 AGAAAAAAAAGGAAA
*
7256179 GGAAAAAAAAGGAA
1 AGAAAAAAAAGGAA
7256193 TTCATATTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 4 0.16
15 19 0.76
16 2 0.08
ACGTcount: A:0.77, C:0.00, G:0.20, T:0.02
Consensus pattern (15 bp):
AGAAAAAAAAGGAAA
Found at i:7256266 original size:20 final size:20
Alignment explanation
Indices: 7256213--7256266 Score: 51
Period size: 20 Copynumber: 2.7 Consensus size: 20
7256203 ATATGTAATT
7256213 TTAAAAAGAAAAGGGTTTTA
1 TTAAAAAGAAAAGGGTTTTA
*
7256233 --AAAAATAATGAAGGGTTTCTA
1 TTAAAAAGAA--AAGGGTTT-TA
7256254 TTAAAAA-AAAAGG
1 TTAAAAAGAAAAGG
7256267 AAAAATGAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 10
0.72 0.03 0.26
Matches are distributed among these distances:
18 7 0.25
20 12 0.43
21 2 0.07
22 2 0.07
23 5 0.18
ACGTcount: A:0.54, C:0.02, G:0.19, T:0.26
Consensus pattern (20 bp):
TTAAAAAGAAAAGGGTTTTA
Found at i:7256279 original size:108 final size:107
Alignment explanation
Indices: 7256083--7256280 Score: 296
Period size: 108 Copynumber: 1.8 Consensus size: 107
7256073 AAAATGCTCC
7256083 AATTCATATTTAATATGCAATTTTAAAAAGATGAAAGGTTTTAAAAATGAATGAAGGGTTTCTAT
1 AATTCATATTTAATATGCAATTTTAAAAAGA-GAAAGGTTTTAAAAATGAATGAAGGGTTTCTAT
7256148 CAGAAAAAAAAGATAAAAGAAAAAAAGGAAAGGAAAAAAAAGG
65 CAGAAAAAAAAGATAAAAGAAAAAAAGGAAAGGAAAAAAAAGG
* *
7256191 AATTCATATTTCATATGTAATTTTAAAAAGA-AAAGGGTTTTAAAAAAT-AATGAAGGGTTTCTA
1 AATTCATATTTAATATGCAATTTTAAAAAGAGAAA-GGTTTT-AAAAATGAATGAAGGGTTTCTA
*
7256254 TTA-AAAAAAAAGGA-AAAATGAAAAAAA
64 TCAGAAAAAAAA-GATAAAA-GAAAAAAA
7256281 TGGGAAGATG
Statistics
Matches: 83, Mismatches: 3, Indels: 9
0.87 0.03 0.09
Matches are distributed among these distances:
106 15 0.18
107 33 0.40
108 35 0.42
ACGTcount: A:0.55, C:0.04, G:0.16, T:0.26
Consensus pattern (107 bp):
AATTCATATTTAATATGCAATTTTAAAAAGAGAAAGGTTTTAAAAATGAATGAAGGGTTTCTATC
AGAAAAAAAAGATAAAAGAAAAAAAGGAAAGGAAAAAAAAGG
Found at i:7256308 original size:17 final size:20
Alignment explanation
Indices: 7256288--7256329 Score: 63
Period size: 17 Copynumber: 2.2 Consensus size: 20
7256278 AAATGGGAAG
7256288 ATGAAGGG-TTTA-AAAA-A
1 ATGAAGGGTTTTACAAAAGA
7256305 ATGAAGGGTTTTACAAAAGA
1 ATGAAGGGTTTTACAAAAGA
7256325 ATGAA
1 ATGAA
7256330 AATCCTCTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 8 0.36
18 4 0.18
19 4 0.18
20 6 0.27
ACGTcount: A:0.50, C:0.02, G:0.24, T:0.24
Consensus pattern (20 bp):
ATGAAGGGTTTTACAAAAGA
Found at i:7265959 original size:28 final size:28
Alignment explanation
Indices: 7265923--7266073 Score: 171
Period size: 28 Copynumber: 5.3 Consensus size: 28
7265913 AATTCAAACA
7265923 AAACATGTTATT-TTGTCTAAATTGAGAC
1 AAACATGTT-TTCTTGTCTAAATTGAGAC
* *
7265951 AAACATGTTTTCTTGTCTAAATTAAAAC
1 AAACATGTTTTCTTGTCTAAATTGAGAC
* *
7265979 AAAAAATATTTTTCTTGTCTTAAATTGAGAC
1 -AAACAT-GTTTTCTTGTC-TAAATTGAGAC
* *
7266010 AAACATGTTTTCTTGTCTAAATTTGAAAA
1 AAACATGTTTTCTTGTCTAAA-TTGAGAC
* *
7266039 AAATATG-TTTCTTGTCTAAATTAAGAC
1 AAACATGTTTTCTTGTCTAAATTGAGAC
7266066 AAACATGT
1 AAACATGT
7266074 AAAAGTTGTC
Statistics
Matches: 102, Mismatches: 15, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
27 12 0.12
28 40 0.39
29 26 0.25
30 15 0.15
31 9 0.09
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.40
Consensus pattern (28 bp):
AAACATGTTTTCTTGTCTAAATTGAGAC
Found at i:7266008 original size:59 final size:57
Alignment explanation
Indices: 7265913--7266073 Score: 218
Period size: 57 Copynumber: 2.8 Consensus size: 57
7265903 TCTTATCTTT
* * *
7265913 AATTCAAACAAAACATGTTATT-TTGTCTAAATTGAGACAAACATGTTTTCTTGTCTA
1 AATT-AAACAAAAAATATTTTTCTTGTCTAAATTGAGACAAACATGTTTTCTTGTCTA
7265970 AATTAAAACAAAAAATATTTTTCTTGTCTTAAATTGAGACAAACATGTTTTCTTGTCTA
1 AATT-AAACAAAAAATATTTTTCTTGTC-TAAATTGAGACAAACATGTTTTCTTGTCTA
** * *
7266029 AATTTGA-AAAAAATATGTTTCTTGTCTAAATTAAGACAAACATGT
1 AATTAAACAAAAAATATTTTTCTTGTCTAAATTGAGACAAACATGT
7266074 AAAAGTTGTC
Statistics
Matches: 94, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
56 18 0.19
57 36 0.38
58 6 0.06
59 34 0.36
ACGTcount: A:0.40, C:0.12, G:0.10, T:0.39
Consensus pattern (57 bp):
AATTAAACAAAAAATATTTTTCTTGTCTAAATTGAGACAAACATGTTTTCTTGTCTA
Found at i:7268684 original size:26 final size:26
Alignment explanation
Indices: 7268648--7268884 Score: 139
Period size: 26 Copynumber: 9.7 Consensus size: 26
7268638 CTAACTTTGA
*
7268648 GCATTACGTGACT-GATTTTTGATAAG
1 GCATTACGTGACTAG-TTTCTGATAAG
7268674 GCATTACGTGACTAGTTTCTGATAAG
1 GCATTACGTGACTAGTTTCTGATAAG
*
7268700 GCATTACGTGACTAG--T-TAAT-AG
1 GCATTACGTGACTAGTTTCTGATAAG
* *
7268722 GCATTGCGTGACT-GACTT-TG----G
1 GCATTACGTGACTAG-TTTCTGATAAG
* *
7268743 GTA-TAGCGTGACTAGTTTCTTATAAG
1 GCATTA-CGTGACTAGTTTCTGATAAG
* * * *
7268769 GCTTTGCGTGAATAGTTTCTGATAAA
1 GCATTACGTGACTAGTTTCTGATAAG
* **
7268795 GCATTGCGTGACTAACTT-TG----G
1 GCATTACGTGACTAGTTTCTGATAAG
* * * *
7268816 ACATTGCGTGACTAGTTTTTTATAAG
1 GCATTACGTGACTAGTTTCTGATAAG
* *
7268842 GCATTGCGTGACTAGTTTCTGATATG
1 GCATTACGTGACTAGTTTCTGATAAG
* *
7268868 GCATTGCATGACTAGTT
1 GCATTACGTGACTAGTT
7268885 GATAGGCATT
Statistics
Matches: 166, Mismatches: 28, Indels: 34
0.73 0.12 0.15
Matches are distributed among these distances:
20 1 0.01
21 28 0.17
22 17 0.10
23 3 0.02
24 3 0.02
25 2 0.01
26 110 0.66
27 2 0.01
ACGTcount: A:0.24, C:0.14, G:0.24, T:0.37
Consensus pattern (26 bp):
GCATTACGTGACTAGTTTCTGATAAG
Found at i:7268779 original size:95 final size:95
Alignment explanation
Indices: 7268607--7268808 Score: 248
Period size: 95 Copynumber: 2.1 Consensus size: 95
7268597 ATTTTTGAAA
* **
7268607 ATTATGTGACTAGTTTTTAAGCATTGCGTGACTAACTTTGAGCATTACGTGACTGATTTTTGATA
1 ATTACGTGACTAGTTAATAAGCATTGCGTGACTAACTTTGAGCATTACGTGACTGATTTTTGATA
* *
7268672 AGGCATTACGTGACTAGTTTCTGATAAGGC
66 AGGCATTACGTGAATAGTTTCTGATAAAGC
* * * *
7268702 ATTACGTGACTAGTTAATAGGCATTGCGTGACTGACTTTGGGTA-TAGCGTGACT-AGTTTCTT-
1 ATTACGTGACTAGTTAATAAGCATTGCGTGACTAACTTTGAGCATTA-CGTGACTGA-TTT-TTG
* *
7268764 ATAAGGCTTTGCGTGAATAGTTTCTGATAAAGC
63 ATAAGGCATTACGTGAATAGTTTCTGATAAAGC
*
7268797 ATTGCGTGACTA
1 ATTACGTGACTA
7268809 ACTTTGGACA
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
94 3 0.03
95 87 0.95
96 2 0.02
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.37
Consensus pattern (95 bp):
ATTACGTGACTAGTTAATAAGCATTGCGTGACTAACTTTGAGCATTACGTGACTGATTTTTGATA
AGGCATTACGTGAATAGTTTCTGATAAAGC
Found at i:7268831 original size:73 final size:73
Alignment explanation
Indices: 7268675--7268881 Score: 260
Period size: 73 Copynumber: 2.9 Consensus size: 73
7268665 TTTGATAAGG
* * * * *
7268675 CATTACGTGACTAGTTTCTGATAAGGCATTACGTGACTAG--T-TAAT-AGGCATTGCGTGACTG
1 CATTGCGTGACTAGTTTCTTATAAGGCATTGCGTGACTAGTTTCTGATAAGGCATTGCGTGACTA
*
7268736 ACTTTGGG
66 ACTTTGGA
* * * * *
7268744 TATAGCGTGACTAGTTTCTTATAAGGCTTTGCGTGAATAGTTTCTGATAAAGCATTGCGTGACTA
1 CATTGCGTGACTAGTTTCTTATAAGGCATTGCGTGACTAGTTTCTGATAAGGCATTGCGTGACTA
7268809 ACTTTGGA
66 ACTTTGGA
* * *
7268817 CATTGCGTGACTAGTTTTTTATAAGGCATTGCGTGACTAGTTTCTGATATGGCATTGCATGACTA
1 CATTGCGTGACTAGTTTCTTATAAGGCATTGCGTGACTAGTTTCTGATAAGGCATTGCGTGACTA
7268882 GTTGATAGGC
Statistics
Matches: 115, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
69 33 0.29
71 1 0.01
72 3 0.03
73 78 0.68
ACGTcount: A:0.25, C:0.15, G:0.24, T:0.36
Consensus pattern (73 bp):
CATTGCGTGACTAGTTTCTTATAAGGCATTGCGTGACTAGTTTCTGATAAGGCATTGCGTGACTA
ACTTTGGA
Found at i:7268940 original size:23 final size:22
Alignment explanation
Indices: 7268838--7268971 Score: 135
Period size: 23 Copynumber: 5.8 Consensus size: 22
7268828 TAGTTTTTTA
*
7268838 TAAGGCATTGCGTGACTAGTTTCTG
1 TAAGGCATTGCGTGACT--TGT-TG
* * *
7268863 ATATGGCATTGCATGACTAGTTG
1 -TAAGGCATTGCGTGACTTGTTG
7268886 -ATAGGCATTGCGTGACTTGTTG
1 TA-AGGCATTGCGTGACTTGTTG
7268908 TAAGGCATTGCGTGACTTGTTAG
1 TAAGGCATTGCGTGACTTGTT-G
*
7268931 TAAGGTATTGCGTGACTTGTTCG
1 TAAGGCATTGCGTGACTTGTT-G
**
7268954 TAAGGCATTATGTGACTT
1 TAAGGCATTGCGTGACTT
7268972 AGGCATTACT
Statistics
Matches: 93, Mismatches: 12, Indels: 9
0.82 0.11 0.08
Matches are distributed among these distances:
21 1 0.01
22 36 0.39
23 40 0.43
24 1 0.01
26 15 0.16
ACGTcount: A:0.22, C:0.13, G:0.28, T:0.37
Consensus pattern (22 bp):
TAAGGCATTGCGTGACTTGTTG
Found at i:7268949 original size:45 final size:45
Alignment explanation
Indices: 7268840--7268971 Score: 142
Period size: 44 Copynumber: 2.9 Consensus size: 45
7268830 GTTTTTTATA
* * * *
7268840 AGGCATTGCGTGACTAGTTTCTGATATGGCATTGCATGACTAGTTGAT
1 AGGCATTGCGTGACTTG-TTC-G-TAAGGCATTGCGTGACTTGTTGAT
7268888 AGGCATTGCGTGACTTGTT-GTAAGGCATTGCGTGACTTGTT-AGT
1 AGGCATTGCGTGACTTGTTCGTAAGGCATTGCGTGACTTGTTGA-T
* **
7268932 AAGGTATTGCGTGACTTGTTCGTAAGGCATTATGTGACTT
1 -AGGCATTGCGTGACTTGTTCGTAAGGCATTGCGTGACTT
7268972 AGGCATTACT
Statistics
Matches: 74, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
43 1 0.01
44 19 0.26
45 19 0.26
46 17 0.23
47 2 0.03
48 16 0.22
ACGTcount: A:0.21, C:0.14, G:0.29, T:0.36
Consensus pattern (45 bp):
AGGCATTGCGTGACTTGTTCGTAAGGCATTGCGTGACTTGTTGAT
Found at i:7269014 original size:22 final size:22
Alignment explanation
Indices: 7268982--7269023 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
7268972 AGGCATTACT
*
7268982 TAAAAATTAGTCATGCAATGTA
1 TAAAAACTAGTCATGCAATGTA
*
7269004 TAAAAACTAGTCATGTAATG
1 TAAAAACTAGTCATGCAATG
7269024 CCTCTAACCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.45, C:0.10, G:0.14, T:0.31
Consensus pattern (22 bp):
TAAAAACTAGTCATGCAATGTA
Found at i:7269971 original size:3 final size:3
Alignment explanation
Indices: 7269963--7269988 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
7269953 CTTTTTTCAT
7269963 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
7269989 TAATAAACAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Done.