Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41236440
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2030548 characters in sequence are not A, C, G, or T
File 18 of 106
Found at i:8072177 original size:18 final size:18
Alignment explanation
Indices: 8072142--8072199 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
8072132 AAAAAAATGT
* *
8072142 ATAATCCACCAGAAGTGG
1 ATAACCCACCAAAAGTGG
* * *
8072160 ATAACCCATCATATGTGG
1 ATAACCCACCAAAAGTGG
*
8072178 ATCACCCACCAAAAGTGG
1 ATAACCCACCAAAAGTGG
8072196 ATAA
1 ATAA
8072200 ATACTTGTAA
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.40, C:0.24, G:0.17, T:0.19
Consensus pattern (18 bp):
ATAACCCACCAAAAGTGG
Found at i:8076021 original size:26 final size:23
Alignment explanation
Indices: 8075960--8076019 Score: 93
Period size: 23 Copynumber: 2.6 Consensus size: 23
8075950 TATACGTATA
*
8075960 CCCATCATCATCATGCACACCAT
1 CCCATCATCATCATACACACCAT
*
8075983 CCCATCATCATCATATACACCAT
1 CCCATCATCATCATACACACCAT
*
8076006 CACATCATCATCAT
1 CCCATCATCATCAT
8076020 CACTAGCTCA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.33, C:0.40, G:0.02, T:0.25
Consensus pattern (23 bp):
CCCATCATCATCATACACACCAT
Found at i:8076103 original size:43 final size:43
Alignment explanation
Indices: 8076078--8076181 Score: 154
Period size: 43 Copynumber: 2.4 Consensus size: 43
8076068 GGTTATGCGT
* *
8076078 ACTCCCTACTCGTACATAATCGGGTCATCCTCGACTTATGCAC
1 ACTCCCTACTCGCACATAACCGGGTCATCCTCGACTTATGCAC
* *
8076121 ACTCCCTACTCGCACATAACCGGGTCATCCTCAACTTATGCGC
1 ACTCCCTACTCGCACATAACCGGGTCATCCTCGACTTATGCAC
* *
8076164 ATTCCTTACTCGCACATA
1 ACTCCCTACTCGCACATA
8076182 GCAGAGTCAA
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.24, C:0.37, G:0.12, T:0.27
Consensus pattern (43 bp):
ACTCCCTACTCGCACATAACCGGGTCATCCTCGACTTATGCAC
Found at i:8082238 original size:51 final size:51
Alignment explanation
Indices: 8082157--8082260 Score: 199
Period size: 51 Copynumber: 2.0 Consensus size: 51
8082147 AATGACTTTT
*
8082157 TATCCCAATTGGTGGTCAATTCGGCCAACTGCTCATCTCATCTAGTTCCTA
1 TATCACAATTGGTGGTCAATTCGGCCAACTGCTCATCTCATCTAGTTCCTA
8082208 TATCACAATTGGTGGTCAATTCGGCCAACTGCTCATCTCATCTAGTTCCTA
1 TATCACAATTGGTGGTCAATTCGGCCAACTGCTCATCTCATCTAGTTCCTA
8082259 TA
1 TA
8082261 CTAACCAACA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.23, C:0.28, G:0.15, T:0.34
Consensus pattern (51 bp):
TATCACAATTGGTGGTCAATTCGGCCAACTGCTCATCTCATCTAGTTCCTA
Found at i:8089293 original size:162 final size:161
Alignment explanation
Indices: 8089065--8089381 Score: 418
Period size: 162 Copynumber: 2.0 Consensus size: 161
8089055 AATAATAACA
* * * *
8089065 ATAATCAAAATGAATATCTATAATATTAAATATCTAAAAACAATATGTTCGATGCGTTACTTACA
1 ATAATCAAAACGAATATCTATAATATTAAATATCTAAAAACAATATGCTCAACGCGTTACTTACA
* *** * * *
8089130 TTTATATGTTTTAAATTTTCTTGCAATCAATAACTAATTTATTTATATTTTAATTATTGAAAACA
66 TTTATATATCACAAATTTTCATGCAATCAATAAATAATTTACTTATATTTTAATTATTGAAAACA
*
8089195 TTCCAATAAAAGGGAAAAAGAGAAGATAAGAT
131 TTCCAATAAAA-GGAAAAAGAAAAGATAAGAT
* * * * * * *
8089227 ATAATCCAAACGAATATCTATAATATTTATTATTTGAAAATAATATGCTCAACGCGTTATTTACA
1 ATAATCAAAACGAATATCTATAATATTAAATATCTAAAAACAATATGCTCAACGCGTTACTTACA
* * *
8089292 TTTATTTATCACAAATTTTCATGCTATTAATAAATAATTTACTTATATTTTAATTATTGAAAACA
66 TTTATATATCACAAATTTTCATGCAATCAATAAATAATTTACTTATATTTTAATTATTGAAAACA
*
8089357 TTCCAATGAAAGGAAAAAGAAAAGA
131 TTCCAATAAAAGGAAAAAGAAAAGA
8089382 AAGTAAGCTG
Statistics
Matches: 132, Mismatches: 23, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
161 13 0.10
162 119 0.90
ACGTcount: A:0.44, C:0.10, G:0.09, T:0.37
Consensus pattern (161 bp):
ATAATCAAAACGAATATCTATAATATTAAATATCTAAAAACAATATGCTCAACGCGTTACTTACA
TTTATATATCACAAATTTTCATGCAATCAATAAATAATTTACTTATATTTTAATTATTGAAAACA
TTCCAATAAAAGGAAAAAGAAAAGATAAGAT
Found at i:8091626 original size:1 final size:1
Alignment explanation
Indices: 8091620--8091651 Score: 55
Period size: 1 Copynumber: 32.0 Consensus size: 1
8091610 TATAATATAT
*
8091620 AAAAAAAAAAACAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
8091652 TTATATATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:0.97, C:0.03, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:8091658 original size:2 final size:2
Alignment explanation
Indices: 8091653--8091688 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
8091643 AAAAAAAAAT
* *
8091653 TA TA TA TA TA TA CA TA TA TA CA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8091689 GAAGAGGGTG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (2 bp):
TA
Found at i:8099588 original size:13 final size:13
Alignment explanation
Indices: 8099572--8099603 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
8099562 TATAGTATGT
8099572 TGATATGACATGA
1 TGATATGACATGA
8099585 TGATATGACATGA
1 TGATATGACATGA
8099598 TGATAT
1 TGATAT
8099604 AATTATTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.38, C:0.06, G:0.22, T:0.34
Consensus pattern (13 bp):
TGATATGACATGA
Found at i:8105759 original size:55 final size:56
Alignment explanation
Indices: 8105668--8105853 Score: 193
Period size: 55 Copynumber: 3.4 Consensus size: 56
8105658 GTTAGAGTTA
* *
8105668 TTTTAGCGTATCACGACTGTTCCT-GGCGTGTTGTGGGTTAACTAGTTTTTTGGGT
1 TTTTAGCGTGTCACGACTGTTCCTAGGCGTGTCGTGGGTTAACTAGTTTTTTGGGT
* * * *
8105723 TGTTAGCGTGTCACGACTGTTCCTAGG-GTGTCGTGGGTTAAC-CGAATTTATGGGTT
1 TTTTAGCGTGTCACGACTGTTCCTAGGCGTGTCGTGGGTTAACTAG-TTTTTTGGG-T
* * * ** *
8105779 TTTTA-CGTGTCACGGCTATTCC-AGGTGTGTCGTATGTTAACTGGTTTTTTGGGT
1 TTTTAGCGTGTCACGACTGTTCCTAGGCGTGTCGTGGGTTAACTAGTTTTTTGGGT
* *
8105833 TTTTAGCTTGTCACGGCTGTT
1 TTTTAGCGTGTCACGACTGTT
8105854 GGTGCAAGGA
Statistics
Matches: 109, Mismatches: 16, Indels: 12
0.80 0.12 0.09
Matches are distributed among these distances:
54 10 0.09
55 91 0.83
56 8 0.07
ACGTcount: A:0.13, C:0.16, G:0.29, T:0.42
Consensus pattern (56 bp):
TTTTAGCGTGTCACGACTGTTCCTAGGCGTGTCGTGGGTTAACTAGTTTTTTGGGT
Found at i:8105899 original size:20 final size:21
Alignment explanation
Indices: 8105874--8105917 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 21
8105864 GTCAGTAATT
8105874 ACAGTGAT-TGGCGTGTCACG
1 ACAGTGATATGGCGTGTCACG
8105894 ACAGTGATGCATGGCGTGTCACG
1 ACAGTGAT--ATGGCGTGTCACG
8105917 A
1 A
8105918 TAATGATGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 8 0.38
23 13 0.62
ACGTcount: A:0.23, C:0.20, G:0.34, T:0.23
Consensus pattern (21 bp):
ACAGTGATATGGCGTGTCACG
Found at i:8105912 original size:23 final size:23
Alignment explanation
Indices: 8105882--8105942 Score: 86
Period size: 23 Copynumber: 2.7 Consensus size: 23
8105872 TTACAGTGAT
*
8105882 TGGCGTGTCACGACAGTGATGCA
1 TGGCGTGTCACGACAATGATGCA
*
8105905 TGGCGTGTCACGATAATGATGCA
1 TGGCGTGTCACGACAATGATGCA
**
8105928 TAACGTGTCACGACA
1 TGGCGTGTCACGACA
8105943 TTTGACTTGA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (23 bp):
TGGCGTGTCACGACAATGATGCA
Found at i:8105966 original size:31 final size:31
Alignment explanation
Indices: 8105931--8105997 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
8105921 TGATGCATAA
*
8105931 CGTGTCACGACATTTGACT-TGATATGCATGG
1 CGTGTCACAACATTTGA-TGTGATATGCATGG
* * *
8105962 CGTGTTACAACATTTTATGTTATATGCATGG
1 CGTGTCACAACATTTGATGTGATATGCATGG
8105993 CGTGT
1 CGTGT
8105998 AATAACACGA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 1 0.03
31 30 0.97
ACGTcount: A:0.22, C:0.16, G:0.24, T:0.37
Consensus pattern (31 bp):
CGTGTCACAACATTTGATGTGATATGCATGG
Found at i:8110178 original size:31 final size:31
Alignment explanation
Indices: 8110132--8110501 Score: 370
Period size: 31 Copynumber: 12.0 Consensus size: 31
8110122 AATAAGGAAT
*
8110132 AAATG-TGAGACACGCCATGCATAACAAGTA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
* *
8110162 AAATGTTGTGACACGCCGTGCATATCAAGTA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
* *
8110193 AAATATTGTGACACGCCATGCATAACAAGCA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
* * *
8110224 AAATTTTATGACACGCCATGCATAAAAAGT-
1 AAATGTTGTGACACGCCATGCATAACAAGTA
* *
8110254 TAATCGTTGTGACACGCCATGCATAACAATTA
1 AAAT-GTTGTGACACGCCATGCATAACAAGTA
* * *
8110286 AATTGTTTTGACCCGCCATGCATAACAAGTA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
* * * * *
8110317 AATTG-TGCTGATATGCCATGCATAACAAATT
1 AAATGTTG-TGACACGCCATGCATAACAAGTA
* *
8110348 AAACGTTGTGACACGCCATGCATAACAATTA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
* * * * *
8110379 AATTATTCTGACCCGTCATGCATAACAAGTA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
* *
8110410 AATTG-TGCTGACACGCCATGCATAACAAGTT
1 AAATGTTG-TGACACGCCATGCATAACAAGTA
** * *
8110441 AAGCGTTGTGACATGCCATGCATAACAATTA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
* * * *
8110472 AATTGTTCTGACTCGTCATGCATAACAAGT
1 AAATGTTGTGACACGCCATGCATAACAAGT
8110502 TTTGGTGTGT
Statistics
Matches: 276, Mismatches: 57, Indels: 13
0.80 0.16 0.04
Matches are distributed among these distances:
30 10 0.04
31 260 0.94
32 6 0.02
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.26
Consensus pattern (31 bp):
AAATGTTGTGACACGCCATGCATAACAAGTA
Found at i:8110303 original size:93 final size:93
Alignment explanation
Indices: 8110140--8110501 Score: 469
Period size: 93 Copynumber: 3.9 Consensus size: 93
8110130 ATAAATGTGA
* * * * * * *
8110140 GACACGCCATGCATAACAAGTAAAAT-GTTGTGACACGCCGTGCATATCAAGTAAAATATTGTGA
1 GACACGCCATGCATAAAAAGT-TAATCGTTGTGACACGCCATGCATAACAATTAAATTATTCTGA
* * **
8110204 CACGCCATGCATAACAAGCAAAATT-TTAT
65 CCCGCCATGCATAACAAG-TAAATTGTGCT
* *
8110233 GACACGCCATGCATAAAAAGTTAATCGTTGTGACACGCCATGCATAACAATTAAATTGTTTTGAC
1 GACACGCCATGCATAAAAAGTTAATCGTTGTGACACGCCATGCATAACAATTAAATTATTCTGAC
8110298 CCGCCATGCATAACAAGTAAATTGTGCT
66 CCGCCATGCATAACAAGTAAATTGTGCT
* * *
8110326 GATATGCCATGCATAACAAA-TTAAACGTTGTGACACGCCATGCATAACAATTAAATTATTCTGA
1 GACACGCCATGCATAA-AAAGTTAATCGTTGTGACACGCCATGCATAACAATTAAATTATTCTGA
*
8110390 CCCGTCATGCATAACAAGTAAATTGTGCT
65 CCCGCCATGCATAACAAGTAAATTGTGCT
* * * *
8110419 GACACGCCATGCATAACAAGTTAAGCGTTGTGACATGCCATGCATAACAATTAAATTGTTCTGAC
1 GACACGCCATGCATAAAAAGTTAATCGTTGTGACACGCCATGCATAACAATTAAATTATTCTGAC
* *
8110484 TCGTCATGCATAACAAGT
66 CCGCCATGCATAACAAGT
8110502 TTTGGTGTGT
Statistics
Matches: 240, Mismatches: 25, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
92 10 0.04
93 227 0.95
94 3 0.01
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.26
Consensus pattern (93 bp):
GACACGCCATGCATAAAAAGTTAATCGTTGTGACACGCCATGCATAACAATTAAATTATTCTGAC
CCGCCATGCATAACAAGTAAATTGTGCT
Found at i:8111534 original size:19 final size:20
Alignment explanation
Indices: 8111493--8111539 Score: 51
Period size: 23 Copynumber: 2.2 Consensus size: 20
8111483 TCTTGGTATC
8111493 AAATTAATTGTGTATAGGCAAAA
1 AAATTAATTGTGTAT--G-AAAA
8111516 AAATTAATTGTGTAT-AAAA
1 AAATTAATTGTGTATGAAAA
*
8111535 TAATT
1 AAATT
8111540 GTACAAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 8 0.35
23 15 0.65
ACGTcount: A:0.49, C:0.02, G:0.13, T:0.36
Consensus pattern (20 bp):
AAATTAATTGTGTATGAAAA
Found at i:8111540 original size:15 final size:15
Alignment explanation
Indices: 8111515--8111560 Score: 51
Period size: 13 Copynumber: 3.1 Consensus size: 15
8111505 TATAGGCAAA
8111515 AAAATTAATTGTGTAT
1 AAAA-TAATTGTGTAT
*
8111531 AAAATAA-T-TGTAC
1 AAAATAATTGTGTAT
8111544 AAAATATATTGTGTAT
1 AAAATA-ATTGTGTAT
8111560 A
1 A
8111561 CAGAAAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
13 10 0.40
14 2 0.08
15 4 0.16
16 9 0.36
ACGTcount: A:0.48, C:0.02, G:0.11, T:0.39
Consensus pattern (15 bp):
AAAATAATTGTGTAT
Found at i:8111568 original size:52 final size:53
Alignment explanation
Indices: 8111493--8111618 Score: 134
Period size: 52 Copynumber: 2.4 Consensus size: 53
8111483 TCTTGGTATC
* * *
8111493 AAATTAATTGTGTATA-GGCAAAAAAATTAATTGTGTATAAAAT-AATTGTACA
1 AAATAAATTGTGTATACAG-AAAAAAATTAATTCTGTATAAAATGAATTGTACA
* ** * * *
8111545 AAATATATTGTGTATACAG-AAAAAATTCTTTCTGTTTACAATGAATTGTATA
1 AAATAAATTGTGTATACAGAAAAAAATTAATTCTGTATAAAATGAATTGTACA
8111597 AAATAAATTGTGTATACA-AAAA
1 AAATAAATTGTGTATACAGAAAA
8111619 GTGTGTATAA
Statistics
Matches: 61, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
51 18 0.30
52 42 0.69
53 1 0.02
ACGTcount: A:0.47, C:0.06, G:0.12, T:0.36
Consensus pattern (53 bp):
AAATAAATTGTGTATACAGAAAAAAATTAATTCTGTATAAAATGAATTGTACA
Found at i:8111612 original size:16 final size:16
Alignment explanation
Indices: 8111591--8111638 Score: 71
Period size: 16 Copynumber: 3.1 Consensus size: 16
8111581 TACAATGAAT
8111591 TGTATAAAATAAATTG
1 TGTATAAAATAAATTG
* *
8111607 TGTATACAA-AAAGTG
1 TGTATAAAATAAATTG
8111622 TGTATAAAATAAATTG
1 TGTATAAAATAAATTG
8111638 T
1 T
8111639 ATAAGAAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
15 13 0.48
16 14 0.52
ACGTcount: A:0.48, C:0.02, G:0.15, T:0.35
Consensus pattern (16 bp):
TGTATAAAATAAATTG
Found at i:8111625 original size:15 final size:16
Alignment explanation
Indices: 8111591--8111642 Score: 65
Period size: 15 Copynumber: 3.4 Consensus size: 16
8111581 TACAATGAAT
*
8111591 TGTATAAAATAAATTG
1 TGTATAAAATAAAGTG
*
8111607 TGTATACAA-AAAGTG
1 TGTATAAAATAAAGTG
8111622 TGTATAAAATAAA-T-
1 TGTATAAAATAAAGTG
8111636 TGTATAA
1 TGTATAA
8111643 GAAAAATTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
14 7 0.22
15 14 0.44
16 11 0.34
ACGTcount: A:0.50, C:0.02, G:0.13, T:0.35
Consensus pattern (16 bp):
TGTATAAAATAAAGTG
Found at i:8111650 original size:14 final size:14
Alignment explanation
Indices: 8111588--8111642 Score: 58
Period size: 14 Copynumber: 3.7 Consensus size: 14
8111578 GTTTACAATG
8111588 AATTGTATAAAATA
1 AATTGTATAAAATA
8111602 AATTGTGTATACAAA-A
1 AA-T-TGTATA-AAATA
*
8111618 AGTGTGTATAAAATA
1 AAT-TGTATAAAATA
8111633 AATTGTATAA
1 AATTGTATAA
8111643 GAAAAATTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
14 12 0.34
15 12 0.34
16 8 0.23
17 3 0.09
ACGTcount: A:0.51, C:0.02, G:0.13, T:0.35
Consensus pattern (14 bp):
AATTGTATAAAATA
Found at i:8111656 original size:16 final size:16
Alignment explanation
Indices: 8111590--8111657 Score: 63
Period size: 16 Copynumber: 4.4 Consensus size: 16
8111580 TTACAATGAA
8111590 TTGTATAAAATAAATT
1 TTGTATAAAATAAATT
* * *
8111606 GTGTATACAA-AAAGT
1 TTGTATAAAATAAATT
*
8111621 GTGTATAAAATAAA--
1 TTGTATAAAATAAATT
8111635 TTGTATAAGAA-AAATT
1 TTGTATAA-AATAAATT
8111651 TTGTATA
1 TTGTATA
8111658 CCAAAAAAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
14 10 0.23
15 15 0.35
16 18 0.42
ACGTcount: A:0.49, C:0.01, G:0.13, T:0.37
Consensus pattern (16 bp):
TTGTATAAAATAAATT
Found at i:8113162 original size:31 final size:31
Alignment explanation
Indices: 8113124--8113422 Score: 291
Period size: 31 Copynumber: 9.6 Consensus size: 31
8113114 AACCATAAAT
*
8113124 AGTAAAATGTTGTGACACG-CAGTGCATACCA
1 AGTAAAATGTTGTGACACGCCA-TGCATAACA
* * *
8113155 AGTAAAATGTTGTCACACACCATGCAAAACA
1 AGTAAAATGTTGTGACACGCCATGCATAACA
* *
8113186 AGTAAAATATCGTGACACGCCATGCATAACA
1 AGTAAAATGTTGTGACACGCCATGCATAACA
* * * * *
8113217 AGATAAACT-TGGTGACACGTCAAGGATAACA
1 AG-TAAAATGTTGTGACACGCCATGCATAACA
* * *
8113248 AGCAAAATGTTATGACACTG-CATGCAAAACA
1 AGTAAAATGTTGTGACAC-GCCATGCATAACA
8113279 AGTAAAATGTTGTGACACGCCATGCATAACA
1 AGTAAAATGTTGTGACACGCCATGCATAACA
* * * *
8113310 AGATAAACT-TGGTGACACGCCAAGGATAACA
1 AG-TAAAATGTTGTGACACGCCATGCATAACA
* * *
8113341 AGCAAAATGTTGTGACACACCATGCATATCA
1 AGTAAAATGTTGTGACACGCCATGCATAACA
* * * * *
8113372 AATCAAACGTTGTGACACGTCATGAATAACA
1 AGTAAAATGTTGTGACACGCCATGCATAACA
*
8113403 AGTAAAATATTGTGACACGC
1 AGTAAAATGTTGTGACACGC
8113423 TAAGGCTAAC
Statistics
Matches: 213, Mismatches: 48, Indels: 14
0.77 0.17 0.05
Matches are distributed among these distances:
30 9 0.04
31 191 0.90
32 13 0.06
ACGTcount: A:0.41, C:0.20, G:0.18, T:0.21
Consensus pattern (31 bp):
AGTAAAATGTTGTGACACGCCATGCATAACA
Found at i:8113365 original size:93 final size:93
Alignment explanation
Indices: 8113153--8113433 Score: 375
Period size: 93 Copynumber: 3.0 Consensus size: 93
8113143 CAGTGCATAC
* * * *
8113153 CAAGTAAAATGTTGTCACACACCATGCAAAACAAGTAAAATATCGTGACACGCCATGCATAACAA
1 CAAGCAAAATGTTGTGACACACCATGCAAAACAAGTAAAATGTTGTGACACGCCATGCATAACAA
*
8113218 GATAAACTTGGTGACACGTCAAGGATAA
66 GATAAACTTGGTGACACGCCAAGGATAA
* **
8113246 CAAGCAAAATGTTATGACACTGCATGCAAAACAAGTAAAATGTTGTGACACGCCATGCATAACAA
1 CAAGCAAAATGTTGTGACACACCATGCAAAACAAGTAAAATGTTGTGACACGCCATGCATAACAA
8113311 GATAAACTTGGTGACACGCCAAGGATAA
66 GATAAACTTGGTGACACGCCAAGGATAA
* * * * * * *
8113339 CAAGCAAAATGTTGTGACACACCATGCATATCAAATCAAACGTTGTGACACGTCATGAATAACAA
1 CAAGCAAAATGTTGTGACACACCATGCAAAACAAGTAAAATGTTGTGACACGCCATGCATAACAA
* * * *
8113404 G-TAAAATATTGTGACACGCTAAGGCTAA
66 GATAAACT-TGGTGACACGCCAAGGATAA
8113432 CA
1 CA
8113434 CGGCAATAAC
Statistics
Matches: 165, Mismatches: 22, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
92 5 0.03
93 160 0.97
ACGTcount: A:0.42, C:0.20, G:0.18, T:0.20
Consensus pattern (93 bp):
CAAGCAAAATGTTGTGACACACCATGCAAAACAAGTAAAATGTTGTGACACGCCATGCATAACAA
GATAAACTTGGTGACACGCCAAGGATAA
Found at i:8114077 original size:156 final size:156
Alignment explanation
Indices: 8113787--8114271 Score: 623
Period size: 156 Copynumber: 3.1 Consensus size: 156
8113777 AACTACATTA
* *
8113787 ACATATACAACTGTGTTATTCAATAATCATATATGGAATTGTTGAACATTAACCGTTACAACTTT
1 ACATATATAACTGTGTTATTCAATAATCATGTATGGAATTGTTGAACATTAACCGTTACAACTTT
* * * * * * * * *
8113852 AATATCCTAATCGGCGGCTCGTTAGCAATCTGCGGTGGAGTCAAACCGATAGGTGCCTGAAGACC
66 AATATCCTAACCGACTGCTCGTTAGCAATCTGCGGTAGAGTCAGACCGATCGGTGCTTGAGGACT
*
8113917 TGTCGTTGCTTCCGTAAACTGCAATT
131 TGTCGTCGCTTCCGTAAACTGCAATT
* * *
8113943 GCATATATAATTGTGTTATTCAATAATCATGTATGGAATTTTTGAACATTAACCGTTACAACTTT
1 ACATATATAACTGTGTTATTCAATAATCATGTATGGAATTGTTGAACATTAACCGTTACAACTTT
* * * *
8114008 AATATCATAACCGACTGCTCGTTAG-AAGTTTGCGGTAGAGTCGGACCAATCGGTGCTTGAGGAC
66 AATATCCTAACCGACTGCTCGTTAGCAA-TCTGCGGTAGAGTCAGACCGATCGGTGCTTGAGGAC
* *
8114072 TTGTCGTCGCTTCCGCAAACTGTAATT
130 TTGTCGTCGCTTCCGTAAACTGCAATT
* * * *
8114099 ACATATATAACTGTGTTATTAAATAATCATGTATGAAATTGTTAAACATTAACTGTTACAACTTT
1 ACATATATAACTGTGTTATTCAATAATCATGTATGGAATTGTTGAACATTAACCGTTACAACTTT
* * * * * **
8114164 AAAATCCTTACC-ATCTACTCGTTAGCTATCTGCGGTTGAACCAGACCGATCGGTGCTTGAGGAC
66 AATATCCTAACCGA-CTGCTCGTTAGCAATCTGCGGTAGAGTCAGACCGATCGGTGCTTGAGGAC
8114228 TTGTCGTCGCTTCCGTAAACTGCAATT
130 TTGTCGTCGCTTCCGTAAACTGCAATT
* * *
8114255 ACAGAAATTACTGTGTT
1 ACATATATAACTGTGTT
8114272 GCTCGATAAA
Statistics
Matches: 282, Mismatches: 44, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
155 3 0.01
156 278 0.99
157 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.33
Consensus pattern (156 bp):
ACATATATAACTGTGTTATTCAATAATCATGTATGGAATTGTTGAACATTAACCGTTACAACTTT
AATATCCTAACCGACTGCTCGTTAGCAATCTGCGGTAGAGTCAGACCGATCGGTGCTTGAGGACT
TGTCGTCGCTTCCGTAAACTGCAATT
Found at i:8115942 original size:31 final size:31
Alignment explanation
Indices: 8115907--8116137 Score: 187
Period size: 31 Copynumber: 7.5 Consensus size: 31
8115897 AATAAGGAAT
* **
8115907 AAATGTTGTGAGACACCATGCATTGCAA-TCA
1 AAATGTTGTGACACACCATGCATAACAAGT-A
* *
8115938 AAATGTTATGACACGCCATGCATAACAAGTA
1 AAATGTTGTGACACACCATGCATAACAAGTA
* * *
8115969 AAATGTTGTGACACGCCAAGCATAACAAGTT
1 AAATGTTGTGACACACCATGCATAACAAGTA
* * * * *
8116000 AAACGCTATGACACGCCATGCATATCAAGTA
1 AAATGTTGTGACACACCATGCATAACAAGTA
* * *
8116031 AAATGCTGTCACA-AGCCATGCATATCAAGTA
1 AAATGTTGTGACACA-CCATGCATAACAAGTA
* * *
8116062 AAATGCTGTGACACGCCATGCATATCAAGTA
1 AAATGTTGTGACACACCATGCATAACAAGTA
* * * ** *
8116093 TAATGCTGTCACATGCCATGCATATCAAGTA
1 AAATGTTGTGACACACCATGCATAACAAGTA
* *
8116124 AAATGCTGTCACAC
1 AAATGTTGTGACAC
8116138 GCCAATAACT
Statistics
Matches: 172, Mismatches: 25, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
31 171 0.99
32 1 0.01
ACGTcount: A:0.37, C:0.22, G:0.17, T:0.23
Consensus pattern (31 bp):
AAATGTTGTGACACACCATGCATAACAAGTA
Found at i:8116010 original size:62 final size:62
Alignment explanation
Indices: 8115937--8116141 Score: 284
Period size: 62 Copynumber: 3.3 Consensus size: 62
8115927 CATTGCAATC
* * * * * * *
8115937 AAAATGTTATGACACGCCATGCATAACAAGTAAAATGTTGTGACACGCCAAGCATAACAAGT
1 AAAATGCTATGACACGCCATGCATATCAAGTAAAATGCTGTCACAAGCCATGCATATCAAGT
* *
8115999 TAAACGCTATGACACGCCATGCATATCAAGTAAAATGCTGTCACAAGCCATGCATATCAAGT
1 AAAATGCTATGACACGCCATGCATATCAAGTAAAATGCTGTCACAAGCCATGCATATCAAGT
* * *
8116061 AAAATGCTGTGACACGCCATGCATATCAAGTATAATGCTGTCACATGCCATGCATATCAAGT
1 AAAATGCTATGACACGCCATGCATATCAAGTAAAATGCTGTCACAAGCCATGCATATCAAGT
* *
8116123 AAAATGCTGTCACACGCCA
1 AAAATGCTATGACACGCCA
8116142 ATAACTAACT
Statistics
Matches: 128, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 128 1.00
ACGTcount: A:0.38, C:0.23, G:0.17, T:0.22
Consensus pattern (62 bp):
AAAATGCTATGACACGCCATGCATATCAAGTAAAATGCTGTCACAAGCCATGCATATCAAGT
Found at i:8116049 original size:93 final size:93
Alignment explanation
Indices: 8115952--8116141 Score: 283
Period size: 93 Copynumber: 2.0 Consensus size: 93
8115942 GTTATGACAC
* *
8115952 GCCATGCATAACAAGTAAAATGTTGTGACACGCCAAGCATAACAAGT-TAAACGCTATGACACGC
1 GCCATGCATAACAAGTAAAATGCTGTGACACGCCAAGCATAACAAGTAT-AACGCTATCACACGC
8116016 CATGCATATCAAGTAAAATGCTGTCACAA
65 CATGCATATCAAGTAAAATGCTGTCACAA
* * * * * *
8116045 GCCATGCATATCAAGTAAAATGCTGTGACACGCCATGCATATCAAGTATAATGCTGTCACATGCC
1 GCCATGCATAACAAGTAAAATGCTGTGACACGCCAAGCATAACAAGTATAACGCTATCACACGCC
*
8116110 ATGCATATCAAGTAAAATGCTGTCACAC
66 ATGCATATCAAGTAAAATGCTGTCACAA
8116138 GCCA
1 GCCA
8116142 ATAACTAACT
Statistics
Matches: 87, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
93 86 0.99
94 1 0.01
ACGTcount: A:0.37, C:0.24, G:0.17, T:0.22
Consensus pattern (93 bp):
GCCATGCATAACAAGTAAAATGCTGTGACACGCCAAGCATAACAAGTATAACGCTATCACACGCC
ATGCATATCAAGTAAAATGCTGTCACAA
Found at i:8116668 original size:53 final size:52
Alignment explanation
Indices: 8116610--8116715 Score: 133
Period size: 53 Copynumber: 2.0 Consensus size: 52
8116600 TCTATTTCAA
* *
8116610 ACCATGACGTGTCAACTACTCAAGCACTG-CTGTGTCACACACTCTAAACCATG
1 ACCATGACATGTCAACTACTCAAGCAATGTC-GTGTCACACACTCTAAA-CATG
* * **
8116663 ACCATGGCATGTCAGCTTTTCAAGCAATGTCGTGTCACACACTCTAAACATG
1 ACCATGACATGTCAACTACTCAAGCAATGTCGTGTCACACACTCTAAACATG
8116715 A
1 A
8116716 TGATGGTGTG
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
52 5 0.11
53 40 0.87
54 1 0.02
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (52 bp):
ACCATGACATGTCAACTACTCAAGCAATGTCGTGTCACACACTCTAAACATG
Found at i:8116787 original size:47 final size:47
Alignment explanation
Indices: 8116718--8117136 Score: 380
Period size: 47 Copynumber: 8.9 Consensus size: 47
8116708 AAACATGATG
* * * *
8116718 ATGGTGTGTCACCAACTATGAACTCTGACGTGTCATA-ACTTCCTTCC
1 ATGGCGTGTCACCAACTCTGAACTCTGACGTGTCACAGA-TTCCCTCC
**
8116765 ATGGTATGTCACCAACTCTGAACTCT-AGCGTGTCACAGATTCCCTCC
1 ATGGCGTGTCACCAACTCTGAACTCTGA-CGTGTCACAGATTCCCTCC
* * * * *
8116812 ATGGTGTTTCACCAACTCGGAA-TGCTGGCGTGTCACAGATTCCCTCA
1 ATGGCGTGTCACCAACTCTGAACT-CTGACGTGTCACAGATTCCCTCC
* * * * *
8116859 ATGGCGTGTCACCAACTCTTAACTCTAACGTCTCATAGATTCCATCC
1 ATGGCGTGTCACCAACTCTGAACTCTGACGTGTCACAGATTCCCTCC
* * * * ***
8116906 ATGGCGTCTCACCAACTCTGAACGCAGGCGTGTCACAGATTTTTTCC
1 ATGGCGTGTCACCAACTCTGAACTCTGACGTGTCACAGATTCCCTCC
* * * ** * *
8116953 ATGTCGCGTCACCAACTCTTAA-TCTGGGGTGTCACAAATTCCCTCA
1 ATGGCGTGTCACCAACTCTGAACTCTGACGTGTCACAGATTCCCTCC
* * *
8116999 ATGGCGTCTCACCAACTCTGAACGCTGTCGTGTCACAGATT-CCTACC
1 ATGGCGTGTCACCAACTCTGAACTCTGACGTGTCACAGATTCCCT-CC
* * *
8117046 ATGGCGTGTCACCAACTCTTAACTCTAACGTTTCACAGATTCCCTCC
1 ATGGCGTGTCACCAACTCTGAACTCTGACGTGTCACAGATTCCCTCC
* * * ** * *
8117093 ATGGCGTCTCACCGACTCTGAGCGGTGCCGTGTCACACATTCCC
1 ATGGCGTGTCACCAACTCTGAACTCTGACGTGTCACAGATTCCC
8117137 AACATGATGT
Statistics
Matches: 297, Mismatches: 67, Indels: 16
0.78 0.18 0.04
Matches are distributed among these distances:
46 39 0.13
47 253 0.85
48 5 0.02
ACGTcount: A:0.22, C:0.32, G:0.18, T:0.28
Consensus pattern (47 bp):
ATGGCGTGTCACCAACTCTGAACTCTGACGTGTCACAGATTCCCTCC
Found at i:8116844 original size:94 final size:94
Alignment explanation
Indices: 8116726--8117135 Score: 482
Period size: 94 Copynumber: 4.4 Consensus size: 94
8116716 TGATGGTGTG
* * * * ** *
8116726 TCACCAACTATGAACTCTGACGTGTCATA-ACTTCCTTCCATGGTATGTCACCAACTCTGAACTC
1 TCACCAACTCTGAACGCTGGCGTGTCACAGA-TTCCTTCCATGGCGTGTCACCAACTCTTAACTC
* * *
8116790 TAGCGTGTCACAGATTCCCTCCATGGTGTT
65 TAACGTGTCACAGATTCCCTCCATGGCGTC
* * * *
8116820 TCACCAACTCGGAATGCTGGCGTGTCACAGATTCCCTCAATGGCGTGTCACCAACTCTTAACTCT
1 TCACCAACTCTGAACGCTGGCGTGTCACAGATTCCTTCCATGGCGTGTCACCAACTCTTAACTCT
* * *
8116885 AACGTCTCATAGATTCCATCCATGGCGTC
66 AACGTGTCACAGATTCCCTCCATGGCGTC
* ** * *
8116914 TCACCAACTCTGAACGCAGGCGTGTCACAGATTTTTTCCATGTCGCGTCACCAACTCTTAA-TCT
1 TCACCAACTCTGAACGCTGGCGTGTCACAGATTCCTTCCATGGCGTGTCACCAACTCTTAACTCT
*** * *
8116978 GGGGTGTCACAAATTCCCTCAATGGCGTC
66 AACGTGTCACAGATTCCCTCCATGGCGTC
* *
8117007 TCACCAACTCTGAACGCTGTCGTGTCACAGATTCCTACCATGGCGTGTCACCAACTCTTAACTCT
1 TCACCAACTCTGAACGCTGGCGTGTCACAGATTCCTTCCATGGCGTGTCACCAACTCTTAACTCT
*
8117072 AACGTTTCACAGATTCCCTCCATGGCGTC
66 AACGTGTCACAGATTCCCTCCATGGCGTC
* * * * *
8117101 TCACCGACTCTGAGCGGTGCCGTGTCACACATTCC
1 TCACCAACTCTGAACGCTGGCGTGTCACAGATTCC
8117136 CAACATGATG
Statistics
Matches: 262, Mismatches: 52, Indels: 4
0.82 0.16 0.01
Matches are distributed among these distances:
93 78 0.30
94 183 0.70
95 1 0.00
ACGTcount: A:0.22, C:0.32, G:0.18, T:0.28
Consensus pattern (94 bp):
TCACCAACTCTGAACGCTGGCGTGTCACAGATTCCTTCCATGGCGTGTCACCAACTCTTAACTCT
AACGTGTCACAGATTCCCTCCATGGCGTC
Found at i:8117052 original size:187 final size:188
Alignment explanation
Indices: 8116772--8117113 Score: 526
Period size: 187 Copynumber: 1.8 Consensus size: 188
8116762 TCCATGGTAT
* * * * *
8116772 GTCACCAACTCTGAACTCTAGCGTGTCACAGATTCCCTCCATGGTGTTTCACCAACTCGGAATGC
1 GTCACCAACTCTGAACTCTAGCGTGTCACAAATTCCCTCAATGGCGTCTCACCAACTCGGAACGC
*
8116837 TGGCGTGTCACAGATTCCCTCAATGGCGTGTCACCAACTCTTAACTCTAACGTCTCATAGATTCC
66 TGGCGTGTCACAGATTCCCTCAATGGCGTGTCACCAACTCTTAACTCTAACGTCTCACAGATTCC
8116902 ATCCATGGCGTCTCACCAACTCTGAACGCAGGCGTGTCACAGATTTTTTCCATGTCGC
131 ATCCATGGCGTCTCACCAACTCTGAACGCAGGCGTGTCACAGATTTTTTCCATGTCGC
* * * *
8116960 GTCACCAACTCTTAA-TCTGGGGTGTCACAAATTCCCTCAATGGCGTCTCACCAACTCTGAACGC
1 GTCACCAACTCTGAACTCTAGCGTGTCACAAATTCCCTCAATGGCGTCTCACCAACTCGGAACGC
* * *
8117024 TGTCGTGTCACAGATT-CCTACCATGGCGTGTCACCAACTCTTAACTCTAACGTTTCACAGATTC
66 TGGCGTGTCACAGATTCCCT-CAATGGCGTGTCACCAACTCTTAACTCTAACGTCTCACAGATTC
* *
8117088 CCTCCATGGCGTCTCACCGACTCTGA
130 CATCCATGGCGTCTCACCAACTCTGA
8117114 GCGGTGCCGT
Statistics
Matches: 138, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
186 3 0.02
187 121 0.88
188 14 0.10
ACGTcount: A:0.23, C:0.32, G:0.18, T:0.27
Consensus pattern (188 bp):
GTCACCAACTCTGAACTCTAGCGTGTCACAAATTCCCTCAATGGCGTCTCACCAACTCGGAACGC
TGGCGTGTCACAGATTCCCTCAATGGCGTGTCACCAACTCTTAACTCTAACGTCTCACAGATTCC
ATCCATGGCGTCTCACCAACTCTGAACGCAGGCGTGTCACAGATTTTTTCCATGTCGC
Found at i:8120345 original size:2 final size:2
Alignment explanation
Indices: 8120335--8120443 Score: 186
Period size: 2 Copynumber: 55.5 Consensus size: 2
8120325 TATAAGTATT
8120335 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
**
8120376 TA TA TA T- TA CN TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8120417 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
8120444 TTCAGAGATG
Statistics
Matches: 101, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
1 2 0.02
2 99 0.98
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8120590 original size:36 final size:36
Alignment explanation
Indices: 8120531--8120618 Score: 113
Period size: 36 Copynumber: 2.4 Consensus size: 36
8120521 CACATAAGTT
* * * * *
8120531 ATGTGCACTCCCATACCGCACATATCTATTATCGTC
1 ATGTGCACTCTCACACTGTACATAGCTATTATCGTC
* *
8120567 ATGTGCACTTTCACACTGTACATAGCTATTATTGTC
1 ATGTGCACTCTCACACTGTACATAGCTATTATCGTC
8120603 ATGTGCACTCTCACAC
1 ATGTGCACTCTCACAC
8120619 CGCACATGGT
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 44 1.00
ACGTcount: A:0.25, C:0.30, G:0.12, T:0.33
Consensus pattern (36 bp):
ATGTGCACTCTCACACTGTACATAGCTATTATCGTC
Found at i:8121335 original size:21 final size:22
Alignment explanation
Indices: 8121310--8121358 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
8121300 TAATATTTTC
* *
8121310 AAAAAATATA-TATAAAAAATT
1 AAAAAATAAATTATAAAAAAAT
*
8121331 AAAAAATAAATTCTAAAAAAAT
1 AAAAAATAAATTATAAAAAAAT
8121353 AAAAAA
1 AAAAAA
8121359 AATTTGAAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 9 0.38
22 15 0.62
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (22 bp):
AAAAAATAAATTATAAAAAAAT
Found at i:8124976 original size:2 final size:2
Alignment explanation
Indices: 8124969--8125008 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
8124959 TGGCTCTCAT
* *
8124969 TC TC TC TC TC TC TC TC TC TC TC CC TC TC TT TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
8125009 AGAGATTCTA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:8130324 original size:185 final size:185
Alignment explanation
Indices: 8130005--8130373 Score: 657
Period size: 185 Copynumber: 2.0 Consensus size: 185
8129995 AAGAAGGTTT
*
8130005 CATGATAAATCCATGGGATGATGCGGGTGATGAAACCATCAGCTGTGCAGGGATGTGACAAAGTT
1 CATGATAAATCCATGGGATGATGCAGGTGATGAAACCATCAGCTGTGCAGGGATGTGACAAAGTT
* *
8130070 CGCCTTCCCTTTTCATGAACCATCTGTTGACATTATTTCCTGAACCAAAATACTAAATGGGGTTT
66 CCCCTCCCCTTTTCATGAACCATCTGTTGACATTATTTCCTGAACCAAAATACTAAATGGGGTTT
8130135 TTGTGAACTATGATGAACCTAAGAGAAGTAACTTTGTGGGTGATTGCTGTAATTA
131 TTGTGAACTATGATGAACCTAAGAGAAGTAACTTTGTGGGTGATTGCTGTAATTA
* * *
8130190 CATGATTAATCCATGGGATGATGCAGGTGATGAAACCATCAGCTGTGCAGGGATGTTATAAAGTT
1 CATGATAAATCCATGGGATGATGCAGGTGATGAAACCATCAGCTGTGCAGGGATGTGACAAAGTT
* *
8130255 CCCCTCCCCTTTTCATGAACCATCTTTTGACATTATTTCCTGAACCAAAATACTAAATGGGTTTT
66 CCCCTCCCCTTTTCATGAACCATCTGTTGACATTATTTCCTGAACCAAAATACTAAATGGGGTTT
*
8130320 TTGTGAACTATGATGAACTTAAGAGAAGTAACTTTGTGGGTGATTGCTGTAATT
131 TTGTGAACTATGATGAACCTAAGAGAAGTAACTTTGTGGGTGATTGCTGTAATT
8130374 TTTCTCCACT
Statistics
Matches: 175, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
185 175 1.00
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (185 bp):
CATGATAAATCCATGGGATGATGCAGGTGATGAAACCATCAGCTGTGCAGGGATGTGACAAAGTT
CCCCTCCCCTTTTCATGAACCATCTGTTGACATTATTTCCTGAACCAAAATACTAAATGGGGTTT
TTGTGAACTATGATGAACCTAAGAGAAGTAACTTTGTGGGTGATTGCTGTAATTA
Found at i:8140441 original size:22 final size:21
Alignment explanation
Indices: 8140423--8140463 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
8140413 ACAGAAAATT
8140423 GCGAG-AAAGAAAAAAGAAAAG
1 GCGAGAAAAG-AAAAAGAAAAG
*
8140444 GTGAGAAAAGAAAAAGAAAA
1 GCGAGAAAAGAAAAAGAAAA
8140464 AAGAGGATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.68, C:0.02, G:0.27, T:0.02
Consensus pattern (21 bp):
GCGAGAAAAGAAAAAGAAAAG
Found at i:8149998 original size:36 final size:36
Alignment explanation
Indices: 8149951--8150026 Score: 152
Period size: 36 Copynumber: 2.1 Consensus size: 36
8149941 CACCATTGGA
8149951 AAGAGCTCAAGTCAAGAAATGTTCAATTGCCAAATG
1 AAGAGCTCAAGTCAAGAAATGTTCAATTGCCAAATG
8149987 AAGAGCTCAAGTCAAGAAATGTTCAATTGCCAAATG
1 AAGAGCTCAAGTCAAGAAATGTTCAATTGCCAAATG
8150023 AAGA
1 AAGA
8150027 ACACAAAGCT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.43, C:0.16, G:0.20, T:0.21
Consensus pattern (36 bp):
AAGAGCTCAAGTCAAGAAATGTTCAATTGCCAAATG
Found at i:8155295 original size:14 final size:13
Alignment explanation
Indices: 8155262--8155286 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8155252 CAAAAATTAT
8155262 AACTTATAAAAAA
1 AACTTATAAAAAA
8155275 AACTTATAAAAA
1 AACTTATAAAAA
8155287 GAAATTTATC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (13 bp):
AACTTATAAAAAA
Found at i:8175785 original size:19 final size:20
Alignment explanation
Indices: 8175748--8175785 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
8175738 ATACTGAAAT
* *
8175748 AAAATTTTAAATTATTCATG
1 AAAATTTTAAATAAGTCATG
8175768 AAAA-TTTAAATAAGTCAT
1 AAAATTTTAAATAAGTCAT
8175786 TAATTTTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.50, C:0.05, G:0.05, T:0.39
Consensus pattern (20 bp):
AAAATTTTAAATAAGTCATG
Found at i:8177445 original size:2 final size:2
Alignment explanation
Indices: 8177438--8177469 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
8177428 ATAACTCAAC
8177438 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8177470 ATAAGAAACC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8178125 original size:33 final size:33
Alignment explanation
Indices: 8178088--8178191 Score: 92
Period size: 33 Copynumber: 3.2 Consensus size: 33
8178078 AAAAACTGTT
8178088 TATATTTATTAATTATGTAAGACATCTAAAATC
1 TATATTTATTAATTATGTAAGACATCTAAAATC
** *
8178121 TATATTTA-T-ATGTAT-TCATTACA--AAAATATC
1 TATATTTATTAAT-TATGT-AAGACATCTAAA-ATC
* * *
8178152 AATATTTATGAATGATGTAAGACATCTAAAATC
1 TATATTTATTAATTATGTAAGACATCTAAAATC
8178185 TATATTT
1 TATATTT
8178192 TTATATATAT
Statistics
Matches: 53, Mismatches: 10, Indels: 16
0.67 0.13 0.20
Matches are distributed among these distances:
30 3 0.06
31 13 0.25
32 14 0.26
33 20 0.38
34 3 0.06
ACGTcount: A:0.42, C:0.09, G:0.07, T:0.42
Consensus pattern (33 bp):
TATATTTATTAATTATGTAAGACATCTAAAATC
Found at i:8183703 original size:343 final size:342
Alignment explanation
Indices: 8182847--8183882 Score: 1247
Period size: 348 Copynumber: 3.0 Consensus size: 342
8182837 TTCTCATTTA
* * * * * *
8182847 GTAGGATAAATTATGTAAGTTTAAGTCAAATAAAAATTTCACCTCTGCACAAATACACGTGGACG
1 GTAGGATAAATTATATAAATTTAAGTC-AATAAAAGTTGC-CCTCCGCACAAATACAC-TAGACG
* *** * *** * * *
8182912 CATGCAGATGTAATTTAGGCTACTTGGCTACAAATCATGGGCACGTATACTAGGTGTTTTTTATA
63 CATGCAGATGTAATTTAGGCTACTTGGCTACACATCCCAGGCATGTATACTAGGCCATGTTGAGA
* *
8182977 GAGACACTAATGTGCACAGATGTCTCCACTAAGCTATGTGACATGTGTAACTTAGACCTTTTTGC
128 GACACACTAATGTGCACAGATGTCTCCACTAAGCTATGTGACATGTGTAAC-TAGACCTTTTTAC
* * * * *
8183042 TTCAACTCTAATTTGTCTCTTGAGGTTAAATATTGCAGACAATTAAATGAGTTTCTGCTTAAAAT
192 TTCAACTCTAGTTTGTCTCTTGAGGTTAAATATGGCAGAGAATT-AATGAGTTTCTACTTTAAAT
* * * * * *
8183107 TGCTTTTTGTCGTTAGGGAAATGGTAACAAGGGTTGAGATTGGGGT-ATGCTTTAAGTGTAGAAC
256 TGCTTTTGGGCATTA-GAAAATGGTAAC-TGGGTTGAGATT-GGGTAATGCTTTAAGTGTAAAAC
*
8183171 TTATCATCAATAAACAGTTTGTTAT
318 TTACCATCAATAAACAGTTTGTTAT
*
8183196 GTAGGATAAATTATATAAATTTAAGTCAAATAAAAGTTTCCCTCCGCACAAATACACTAGGACGC
1 GTAGGATAAATTATATAAATTTAAGTC-AATAAAAGTTGCCCTCCGCACAAATACACTA-GACGC
* * * * *
8183261 ATGCAGATGTGATTGAGGCTACTTGGCTACACATCCCAGCCATGTATACTGGGCCATGCTGAGAG
64 ATGCAGATGTAATTTAGGCTACTTGGCTACACATCCCAGGCATGTATACTAGGCCATGTTGAGAG
*
8183326 ACACACTAATGTGTACAGATGTCTCCACTAAGCTATGTGACATGTGTAACTCAGACCTTTTTACT
129 ACACACTAATGTGCACAGATGTCTCCACTAAGCTATGTGACATGTGTAACT-AGACCTTTTTACT
* **
8183391 TCAACTCTAGTTTGTCTCTCGAGGTTTTATATGGCAGAGAATTGAATGAGTTTCTACTTTAAATT
193 TCAACTCTAGTTTGTCTCTTGAGGTTAAATATGGCAGAGAATT-AATGAGTTTCTACTTTAAATT
* *
8183456 GCTTTTGGGCATGTAGAAAATGGTAACTGGGTTGAGATTGGGTAATGCTGTAGGTGTAAAACTTA
257 GCTTTTGGGCAT-TAGAAAATGGTAACTGGGTTGAGATTGGGTAATGCTTTAAGTGTAAAACTTA
8183521 CCATCAATAAACAGTTTGTTAT
321 CCATCAATAAACAGTTTGTTAT
* * * * *
8183543 GTAGGATAAATTATGTATATTTAAGTC-CT-AAA-TTGCGCTCCGCACAAATACACTTAGATGCA
1 GTAGGATAAATTATATAAATTTAAGTCAATAAAAGTTGCCCTCCGCACAAATACAC-TAGACGCA
* * *
8183605 TGCAGATGCAATTTAGGCTACTTGGCTAGACATCCCAGGCTTGTATACTAGGCCATGTTGAGAGA
65 TGCAGATGTAATTTAGGCTACTTGGCTACACATCCCAGGCATGTATACTAGGCCATGTTGAGAGA
* * * * ** * * *
8183670 CACACTAATTTGCACGGATGTCTCAACTAAGCTATGTGGCACATGTAACTTGACCATTTTACATC
130 CACACTAATGTGCACAGATGTCTCCACTAAGCTATGTGACATGTGTAACTAGACCTTTTTACTTC
* * *
8183735 AACTCTAGTTTGTCCCTTGAGATTAAATATGGCAGAGGATTAATTGAGTTTCTACTTTAAATTGC
195 AACTCTAGTTTGTCTCTTGAGGTTAAATATGGCAGAGAATTAA-TGAGTTTCTACTTTAAATTGC
* * * * *
8183800 TTCTGGGCATTTAGAAAATGTTAAGTGGGTTGAGATT-GGCATATG-TTTAATGTGTTAAACTTA
259 TTTTGGGCA-TTAGAAAATGGTAACTGGGTTGAGATTGGGTA-ATGCTTTAA-GTGTAAAACTTA
*
8183863 CAATCAATAAACAGTTTGTT
321 CCATCAATAAACAGTTTGTT
8183883 CTGCATACCT
Statistics
Matches: 598, Mismatches: 80, Indels: 25
0.85 0.11 0.04
Matches are distributed among these distances:
341 8 0.01
342 133 0.22
343 125 0.21
344 5 0.01
345 1 0.00
346 4 0.01
347 77 0.13
348 206 0.34
349 39 0.07
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (342 bp):
GTAGGATAAATTATATAAATTTAAGTCAATAAAAGTTGCCCTCCGCACAAATACACTAGACGCAT
GCAGATGTAATTTAGGCTACTTGGCTACACATCCCAGGCATGTATACTAGGCCATGTTGAGAGAC
ACACTAATGTGCACAGATGTCTCCACTAAGCTATGTGACATGTGTAACTAGACCTTTTTACTTCA
ACTCTAGTTTGTCTCTTGAGGTTAAATATGGCAGAGAATTAATGAGTTTCTACTTTAAATTGCTT
TTGGGCATTAGAAAATGGTAACTGGGTTGAGATTGGGTAATGCTTTAAGTGTAAAACTTACCATC
AATAAACAGTTTGTTAT
Found at i:8185575 original size:19 final size:19
Alignment explanation
Indices: 8185551--8185589 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
8185541 GGAATTTGGA
8185551 TTAACATGAGCACTCCTGT
1 TTAACATGAGCACTCCTGT
*
8185570 TTAACATGAGCACTCTTGT
1 TTAACATGAGCACTCCTGT
8185589 T
1 T
8185590 AGTAAAACCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (19 bp):
TTAACATGAGCACTCCTGT
Found at i:8192925 original size:22 final size:21
Alignment explanation
Indices: 8192889--8192929 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
8192879 AGGGCAGGCA
8192889 TCAGAAAGCTACAAATGCCAAC
1 TCAGAAAGCTACAAA-GCCAAC
* *
8192911 TCAGAAAGTTTCAAAGCCA
1 TCAGAAAGCTACAAAGCCA
8192930 CATCCTCTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.44, C:0.24, G:0.15, T:0.17
Consensus pattern (21 bp):
TCAGAAAGCTACAAAGCCAAC
Found at i:8201767 original size:62 final size:62
Alignment explanation
Indices: 8201696--8201820 Score: 232
Period size: 62 Copynumber: 2.0 Consensus size: 62
8201686 TTACGTTAAA
* *
8201696 ATAAAATAATATAAAATGACTAAATATGTTAATTAGTTACAATTTTCACAATTTACAAATAC
1 ATAAAATAATATAAAATGACTAAATATGTTAACTAGTTACAACTTTCACAATTTACAAATAC
8201758 ATAAAATAATATAAAATGACTAAATATGTTAACTAGTTACAACTTTCACAATTTACAAATAC
1 ATAAAATAATATAAAATGACTAAATATGTTAACTAGTTACAACTTTCACAATTTACAAATAC
8201820 A
1 A
8201821 CATTCTTTTG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.50, C:0.11, G:0.05, T:0.34
Consensus pattern (62 bp):
ATAAAATAATATAAAATGACTAAATATGTTAACTAGTTACAACTTTCACAATTTACAAATAC
Found at i:8202640 original size:9 final size:9
Alignment explanation
Indices: 8202617--8202660 Score: 54
Period size: 10 Copynumber: 4.8 Consensus size: 9
8202607 AATAATCTAC
*
8202617 TTAAATTTT
1 TTAATTTTT
8202626 TT-ATTTTT
1 TTAATTTTT
8202634 TTAATTTTT
1 TTAATTTTT
8202643 TTCAATTTTT
1 TT-AATTTTT
8202653 TTCAATTT
1 TT-AATTT
8202661 AGTCTCTCGA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
8 7 0.22
9 10 0.31
10 15 0.47
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.73
Consensus pattern (9 bp):
TTAATTTTT
Found at i:8202642 original size:10 final size:10
Alignment explanation
Indices: 8202628--8202660 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
8202618 TAAATTTTTT
8202628 ATTTTTTT-A
1 ATTTTTTTCA
8202637 ATTTTTTTCA
1 ATTTTTTTCA
8202647 ATTTTTTTCA
1 ATTTTTTTCA
8202657 ATTT
1 ATTT
8202661 AGTCTCTCGA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 8 0.35
10 15 0.65
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (10 bp):
ATTTTTTTCA
Found at i:8215029 original size:3 final size:3
Alignment explanation
Indices: 8215021--8215050 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
8215011 AACTAGAAAG
8215021 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
8215051 CTAAATTTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:8219000 original size:27 final size:28
Alignment explanation
Indices: 8218944--8219000 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 28
8218934 TACAGATTGC
* *
8218944 CATAAAGGGGAAAAATCAAATTAAGGCA
1 CATAAAGGGGAAAAATCAAATCAAGACA
*
8218972 CATAAAGGGGAAAACTCAAATCAA-ACA
1 CATAAAGGGGAAAAATCAAATCAAGACA
8218999 CA
1 CA
8219001 AGTGTTAGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 4 0.15
28 22 0.85
ACGTcount: A:0.54, C:0.16, G:0.18, T:0.12
Consensus pattern (28 bp):
CATAAAGGGGAAAAATCAAATCAAGACA
Found at i:8219076 original size:84 final size:84
Alignment explanation
Indices: 8218935--8219104 Score: 313
Period size: 84 Copynumber: 2.0 Consensus size: 84
8218925 GTCCATGGAT
* *
8218935 ACAGATTGCCATAAAGGGGAAAAATCAAATTAAGGCACATAAAGGGGAAAACTCAAATCAAACAC
1 ACAGATTGCCATAAAGGGGAAAAATCAAATTAAGGCACATAAAAGGGAAAAATCAAATCAAACAC
8219000 AAGTGTTAGAAGACTCGCA
66 AAGTGTTAGAAGACTCGCA
*
8219019 ACAGATTGCCATAAAGGGGAAAAATCAAATTAAGGCACATAAAAGGGAAAAATCAAATTAAACAC
1 ACAGATTGCCATAAAGGGGAAAAATCAAATTAAGGCACATAAAAGGGAAAAATCAAATCAAACAC
8219084 AAGTGTTAGAAGACTCGCA
66 AAGTGTTAGAAGACTCGCA
8219103 AC
1 AC
8219105 TTTTAAAACC
Statistics
Matches: 83, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
84 83 1.00
ACGTcount: A:0.49, C:0.16, G:0.19, T:0.16
Consensus pattern (84 bp):
ACAGATTGCCATAAAGGGGAAAAATCAAATTAAGGCACATAAAAGGGAAAAATCAAATCAAACAC
AAGTGTTAGAAGACTCGCA
Found at i:8221566 original size:40 final size:40
Alignment explanation
Indices: 8221519--8221598 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
8221509 TTACTTCAGA
*
8221519 GTAATTCATATTATTTTGAAGCTGCTGTTGCACATTATTT
1 GTAATTCATATTATTTTGAAGCTGCTATTGCACATTATTT
8221559 GTAATTCATATTATTTTGAAGCTGCTATTGCACATTATTT
1 GTAATTCATATTATTTTGAAGCTGCTATTGCACATTATTT
8221599 ACGCAGTGCA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.26, C:0.12, G:0.14, T:0.47
Consensus pattern (40 bp):
GTAATTCATATTATTTTGAAGCTGCTATTGCACATTATTT
Found at i:8230263 original size:22 final size:22
Alignment explanation
Indices: 8230235--8230281 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
8230225 ACTTCAATAG
*
8230235 TTATCAAAAAATGTTGATTGAA
1 TTATCAAAAAATGTTGATTAAA
* *
8230257 TTATCAAGAAATGTTGCTTAAA
1 TTATCAAAAAATGTTGATTAAA
8230279 TTA
1 TTA
8230282 CTTCATTACA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.43, C:0.06, G:0.13, T:0.38
Consensus pattern (22 bp):
TTATCAAAAAATGTTGATTAAA
Found at i:8231949 original size:8 final size:7
Alignment explanation
Indices: 8231920--8231950 Score: 53
Period size: 7 Copynumber: 4.3 Consensus size: 7
8231910 TCATGTATAT
8231920 GGCAAAA
1 GGCAAAA
8231927 GGCAAAA
1 GGCAAAA
8231934 GGCAAAA
1 GGCAAAA
8231941 GGCCAAAA
1 GG-CAAAA
8231949 GG
1 GG
8231951 TTGTTTAGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 16 0.70
8 7 0.30
ACGTcount: A:0.52, C:0.16, G:0.32, T:0.00
Consensus pattern (7 bp):
GGCAAAA
Found at i:8244192 original size:2 final size:2
Alignment explanation
Indices: 8244176--8244231 Score: 94
Period size: 2 Copynumber: 28.0 Consensus size: 2
8244166 CTGTCAACAC
* *
8244176 AG AG AG TG AG CG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
8244218 AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG
8244232 TACTTCCCAC
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.46, C:0.02, G:0.50, T:0.02
Consensus pattern (2 bp):
AG
Found at i:8244292 original size:2 final size:2
Alignment explanation
Indices: 8244280--8244328 Score: 77
Period size: 2 Copynumber: 26.0 Consensus size: 2
8244270 AGGAAGGAGG
8244280 GA GA GA G- GA GA GA GA GA GA GA GA GA GA -A GA -A GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
8244319 GA GA GA GA GA
1 GA GA GA GA GA
8244329 TTACCTCCCA
Statistics
Matches: 44, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
1 3 0.07
2 41 0.93
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
GA
Found at i:8244314 original size:98 final size:99
Alignment explanation
Indices: 8244187--8244368 Score: 323
Period size: 98 Copynumber: 1.8 Consensus size: 99
8244177 GAGAGTGAGC
*
8244187 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTACTTCCCACATATCCAAAT
1 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTACCTCCCACATATCCAAAT
8244252 TGAGGATGGGCTGTGCCNAGGAAGGAGGGAGAGAG
66 TGAGGATGGGCTGTGCC-AGGAAGGAGGGAGAGAG
*
8244287 GAGAGAGAGAGAGAGAGAGA-AGA-AGAGAGAGAGAGAGAGAGATTACCTCCCACATATCCAAAT
1 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTACCTCCCACATATCCAAAT
8244350 TGAGGATGGGCTGTGCCAG
66 TGAGGATGGGCTGTGCCAG
8244369 AGAACATGAT
Statistics
Matches: 80, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
97 2 0.03
98 55 0.69
99 3 0.04
100 20 0.25
ACGTcount: A:0.38, C:0.12, G:0.38, T:0.11
Consensus pattern (99 bp):
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTACCTCCCACATATCCAAAT
TGAGGATGGGCTGTGCCAGGAAGGAGGGAGAGAG
Found at i:8254504 original size:86 final size:87
Alignment explanation
Indices: 8254359--8254643 Score: 438
Period size: 86 Copynumber: 3.3 Consensus size: 87
8254349 TATATGTGGC
* * *
8254359 ATGTGATAAGAGTAGTAGACAAAATGAAGAAAATTTTT-AAAGATATAGCTTGTAATTGATTTTT
1 ATGTGATAAGAGTCGTAGACAAAATGAAGAAAATTTTTCAAAGATATAGCTTGCATTTGATTTTT
*
8254423 CGTGTAGGAAATCTTTATTTTG
66 CGTATAGGAAATCTTTATTTTG
* *
8254445 ATGTGATAAGAGTCGTAGACAAAACGAA-AAAATTTTTCAAAGATATAGCTTGCGTTTGATTTTT
1 ATGTGATAAGAGTCGTAGACAAAATGAAGAAAATTTTTCAAAGATATAGCTTGCATTTGATTTTT
8254509 CGTATAGAGAAAT-TTTATTTTG
66 CGTATAG-GAAATCTTTATTTTG
* *
8254531 ATATCATAAGAGTCGTAGACAAAATGAAGAAAA-TTTTCAAAGATATA-CTTGCATTTGATTTTT
1 ATGTGATAAGAGTCGTAGACAAAATGAAGAAAATTTTTCAAAGATATAGCTTGCATTTGATTTTT
8254594 CGTATAAGG-AATCTTTATTTTG
66 CGTAT-AGGAAATCTTTATTTTG
8254616 ATGTGATAAGAGTCGTAGACAAAATGAA
1 ATGTGATAAGAGTCGTAGACAAAATGAA
8254644 ATTTTTTTTT
Statistics
Matches: 182, Mismatches: 12, Indels: 11
0.89 0.06 0.05
Matches are distributed among these distances:
84 3 0.02
85 65 0.36
86 105 0.58
87 9 0.05
ACGTcount: A:0.38, C:0.07, G:0.19, T:0.36
Consensus pattern (87 bp):
ATGTGATAAGAGTCGTAGACAAAATGAAGAAAATTTTTCAAAGATATAGCTTGCATTTGATTTTT
CGTATAGGAAATCTTTATTTTG
Found at i:8257189 original size:29 final size:29
Alignment explanation
Indices: 8257157--8257217 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
8257147 CATTTTAATG
* *
8257157 AAATATTAT-TTTTTATTTTTGAGTCAAAT
1 AAATATTATAATTTTA-TTTTGAATCAAAT
*
8257186 AAATTTTATAATTTTATTTTGAATCAAAT
1 AAATATTATAATTTTATTTTGAATCAAAT
8257215 AAA
1 AAA
8257218 ATCTTTGTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 23 0.82
30 5 0.18
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (29 bp):
AAATATTATAATTTTATTTTGAATCAAAT
Found at i:8257234 original size:29 final size:29
Alignment explanation
Indices: 8257167--8257239 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 29
8257157 AAATATTATT
*
8257167 TTTTATTTTTGAGTCAAATAAATTTTATAA
1 TTTT-TTTTTGAATCAAATAAATTTTATAA
* *
8257197 TTTTATTTTGAATCAAATAAAATCTTTGT-A
1 TTTTTTTTTGAATCAAAT-AAAT-TTTATAA
8257227 TTTTTTTTTGAAT
1 TTTTTTTTTGAAT
8257240 TAAACAAGCT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
29 12 0.32
30 21 0.57
31 4 0.11
ACGTcount: A:0.33, C:0.04, G:0.07, T:0.56
Consensus pattern (29 bp):
TTTTTTTTTGAATCAAATAAATTTTATAA
Found at i:8264578 original size:21 final size:21
Alignment explanation
Indices: 8264554--8264593 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
8264544 AGTCCATCGC
8264554 CATCATC-CCTTAAACCCCCAA
1 CATCATCTCC-TAAACCCCCAA
*
8264575 CATCTTCTCCTAAACCCCC
1 CATCATCTCCTAAACCCCC
8264594 CGCATCTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 15 0.88
22 2 0.12
ACGTcount: A:0.28, C:0.50, G:0.00, T:0.23
Consensus pattern (21 bp):
CATCATCTCCTAAACCCCCAA
Found at i:8266139 original size:21 final size:20
Alignment explanation
Indices: 8266093--8266144 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
8266083 TCTTTGTTGT
8266093 AAAAATGATAAAATAAAATAA
1 AAAAAT-ATAAAATAAAATAA
* * *
8266114 TAAAATATAAAATTAATTAA
1 AAAAATATAAAATAAAATAA
8266134 AAAAA-ATAAAA
1 AAAAATATAAAA
8266145 CTAGATATAG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 6 0.22
20 16 0.59
21 5 0.19
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.23
Consensus pattern (20 bp):
AAAAATATAAAATAAAATAA
Found at i:8267978 original size:187 final size:188
Alignment explanation
Indices: 8267742--8268104 Score: 525
Period size: 188 Copynumber: 1.9 Consensus size: 188
8267732 AGGTAGTCAT
*
8267742 TTGCAAGTAAAAATGATATTTTTTGTGAATGCAAACCTATTACGAGCGGAAGCATTTTTATTAAA
1 TTGCAAGCAAAAATGATATTTTTTGTGAATGCAAACCTATTACGAGCGGAAGCATTTTTATTAAA
* * *
8267807 GATATTCTCCGAGCCCTCCCATCATTCTAGTGGGACTCAGAGGTAT-TTTTCACTTATG-AAATT
66 GAAATTCTCCGAGCCCTCCCATCATACTAGTGGGACTCAGAGGTATCTTTTCACCTA-GAAAATT
** *
8267870 TTTTGAAGAAACTCACCTTCGCAAGTTCTCTCGAAAAGTCCCATCATTAGGGTAGTTGG
130 TTTCAAAGAAACTCACCTTCGCAAGCTCTCTCGAAAAGTCCCATCATTAGGGTAGTTGG
*
8267929 TTGCAAGCAAAAATGATATTTTTTTGTGAATGCAAACCTATTA-GAGCGGAAGCCTTTTTATTAA
1 TTGCAAGCAAAAATGATA-TTTTTTGTGAATGCAAACCTATTACGAGCGGAAGCATTTTTATTAA
* * * * * * **
8267993 AGAAATTCTTCGAGCCTTTCTATCGTACTGGTGGGACTTGGAGGTATCTTTTCACCTAGAAAATT
65 AGAAATTCTCCGAGCCCTCCCATCATACTAGTGGGACTCAGAGGTATCTTTTCACCTAGAAAATT
* *
8268058 TTTCAAAGAAACTCACCTTCGCAAGCTCTCTCGGACAGTCCCATCAT
130 TTTCAAAGAAACTCACCTTCGCAAGCTCTCTCGAAAAGTCCCATCAT
8268105 CGGGGCTTAT
Statistics
Matches: 155, Mismatches: 18, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
187 75 0.48
188 80 0.52
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (188 bp):
TTGCAAGCAAAAATGATATTTTTTGTGAATGCAAACCTATTACGAGCGGAAGCATTTTTATTAAA
GAAATTCTCCGAGCCCTCCCATCATACTAGTGGGACTCAGAGGTATCTTTTCACCTAGAAAATTT
TTCAAAGAAACTCACCTTCGCAAGCTCTCTCGAAAAGTCCCATCATTAGGGTAGTTGG
Found at i:8269476 original size:30 final size:30
Alignment explanation
Indices: 8269422--8269480 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
8269412 GCTTTCCTAC
*
8269422 TCTCTTTTTTTTTTCTTTCATTTCCTTCTT
1 TCTCTTTTTTTTTTCTTCCATTTCCTTCTT
*
8269452 TCTCTTTCTTTTTTTC-TCCTTTTCCTTCT
1 TCTCTTT-TTTTTTTCTTCCATTTCCTTCT
8269481 CTTCCTCTCC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 18 0.69
31 8 0.31
ACGTcount: A:0.02, C:0.27, G:0.00, T:0.71
Consensus pattern (30 bp):
TCTCTTTTTTTTTTCTTCCATTTCCTTCTT
Found at i:8269576 original size:14 final size:13
Alignment explanation
Indices: 8269553--8269605 Score: 52
Period size: 13 Copynumber: 3.8 Consensus size: 13
8269543 CTTTTTTTTT
8269553 CTTTTTTCTCTTC
1 CTTTTTTCTCTTC
8269566 CTTTCTTTCTCTCTC
1 CTTT-TTTCTCT-TC
*
8269581 TCTCTTTTTCTTTTC
1 -CT-TTTTTCTCTTC
*
8269596 CTTTCTTCTC
1 CTTTTTTCTC
8269606 CCTCTTCTCG
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
13 10 0.30
14 9 0.27
15 4 0.12
16 8 0.24
17 2 0.06
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (13 bp):
CTTTTTTCTCTTC
Found at i:8274011 original size:22 final size:22
Alignment explanation
Indices: 8273960--8274011 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 22
8273950 AGGCAAATCA
* *
8273960 ATTAGTTATTAAGCATTACGTT
1 ATTAGTTTTTAAGCATTACGTC
* *
8273982 ATTGGTTTTTAAGCGTTGA-GTC
1 ATTAGTTTTTAAGCATT-ACGTC
8274004 ATTAGTTT
1 ATTAGTTT
8274012 CTAGGCATAG
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
22 23 0.96
23 1 0.04
ACGTcount: A:0.25, C:0.08, G:0.19, T:0.48
Consensus pattern (22 bp):
ATTAGTTTTTAAGCATTACGTC
Found at i:8274216 original size:22 final size:22
Alignment explanation
Indices: 8274186--8274265 Score: 72
Period size: 22 Copynumber: 3.6 Consensus size: 22
8274176 GACTAAGTAG
* *
8274186 TAGGTATTGCGTGATTGGTTTT
1 TAGGCATTGTGTGATTGGTTTT
* *
8274208 TAGGCATTGTGTGACTGAG-TTG
1 TAGGCATTGTGTGATTG-GTTTT
* * *
8274230 TAGGGATTGTGGGATTGATTTT
1 TAGGCATTGTGTGATTGGTTTT
*
8274252 TAGGCATTATGTGA
1 TAGGCATTGTGTGA
8274266 CTGGGTTGTA
Statistics
Matches: 44, Mismatches: 12, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
22 43 0.98
23 1 0.02
ACGTcount: A:0.19, C:0.05, G:0.34, T:0.42
Consensus pattern (22 bp):
TAGGCATTGTGTGATTGGTTTT
Found at i:8274233 original size:44 final size:44
Alignment explanation
Indices: 8274161--8274282 Score: 154
Period size: 44 Copynumber: 2.8 Consensus size: 44
8274151 CGAGACAATC
* * * * * * *
8274161 TTTTAGGCATTACGAGACTAAGTAGTAGGTATTGCGTGATTGGT
1 TTTTAGGCATTATGTGACTGAGTTGTAGGGATTGCGGGATTGAT
* *
8274205 TTTTAGGCATTGTGTGACTGAGTTGTAGGGATTGTGGGATTGAT
1 TTTTAGGCATTATGTGACTGAGTTGTAGGGATTGCGGGATTGAT
*
8274249 TTTTAGGCATTATGTGACTGGGTTGTAGGGATTG
1 TTTTAGGCATTATGTGACTGAGTTGTAGGGATTG
8274283 ATTTTTAATG
Statistics
Matches: 67, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 67 1.00
ACGTcount: A:0.20, C:0.07, G:0.34, T:0.39
Consensus pattern (44 bp):
TTTTAGGCATTATGTGACTGAGTTGTAGGGATTGCGGGATTGAT
Found at i:8274277 original size:22 final size:22
Alignment explanation
Indices: 8274208--8274282 Score: 78
Period size: 22 Copynumber: 3.4 Consensus size: 22
8274198 GATTGGTTTT
8274208 TAGGCATTGTGTGACTGAGTTG
1 TAGGCATTGTGTGACTGAGTTG
* * * * *
8274230 TAGGGATTGTGGGATTGATTTT
1 TAGGCATTGTGTGACTGAGTTG
* *
8274252 TAGGCATTATGTGACTGGGTTG
1 TAGGCATTGTGTGACTGAGTTG
*
8274274 TAGGGATTG
1 TAGGCATTG
8274283 ATTTTTAATG
Statistics
Matches: 39, Mismatches: 14, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
22 39 1.00
ACGTcount: A:0.19, C:0.05, G:0.37, T:0.39
Consensus pattern (22 bp):
TAGGCATTGTGTGACTGAGTTG
Found at i:8277367 original size:29 final size:29
Alignment explanation
Indices: 8277335--8277391 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 29
8277325 CACCCTCCTA
* * *
8277335 CCTTGTTCTTATGTACCTTTTCACATACG
1 CCTTGTTCTTATATACATGTTCACATACG
* *
8277364 CCTTTTTCTTTTATACATGTTCACATAC
1 CCTTGTTCTTATATACATGTTCACATAC
8277392 TCTTTTTTCT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.19, C:0.26, G:0.07, T:0.47
Consensus pattern (29 bp):
CCTTGTTCTTATATACATGTTCACATACG
Found at i:8277412 original size:28 final size:29
Alignment explanation
Indices: 8277354--8277418 Score: 69
Period size: 29 Copynumber: 2.3 Consensus size: 29
8277344 TATGTACCTT
* *
8277354 TTCACATACGCCTTTTTCTTTTATACATG
1 TTCACATACGCCTTTTTCTTCTAAACATG
* * *
8277383 TTCACATACTCTTTTTTC-TCTAAACTTG
1 TTCACATACGCCTTTTTCTTCTAAACATG
*
8277411 TTCTCATA
1 TTCACATA
8277419 TAGCTTTTTT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 14 0.47
29 16 0.53
ACGTcount: A:0.22, C:0.25, G:0.05, T:0.49
Consensus pattern (29 bp):
TTCACATACGCCTTTTTCTTCTAAACATG
Found at i:8283319 original size:46 final size:46
Alignment explanation
Indices: 8283266--8283354 Score: 162
Period size: 46 Copynumber: 1.9 Consensus size: 46
8283256 ACCAAACACG
8283266 TCAACTACTTTCTCATCAATATCCATTGC-TTTAAGTTGTTCGTACA
1 TCAACTACTTTCTCATCAATATCCATTGCTTTTAA-TTGTTCGTACA
8283312 TCAACTACTTTCTCATCAATATCCATTGCTTTTAATTGTTCGT
1 TCAACTACTTTCTCATCAATATCCATTGCTTTTAATTGTTCGT
8283355 TCTCACATGA
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
46 37 0.88
47 5 0.12
ACGTcount: A:0.25, C:0.24, G:0.08, T:0.44
Consensus pattern (46 bp):
TCAACTACTTTCTCATCAATATCCATTGCTTTTAATTGTTCGTACA
Found at i:8285321 original size:22 final size:23
Alignment explanation
Indices: 8285283--8285326 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
8285273 CGTGACTGAA
*
8285283 TATTTGTTGAGCATTGCGTGACC
1 TATTTGTAGAGCATTGCGTGACC
8285306 TATTTGTAG-GCATTGCGTGAC
1 TATTTGTAGAGCATTGCGTGAC
8285327 TTTAGCTACT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.18, C:0.16, G:0.27, T:0.39
Consensus pattern (23 bp):
TATTTGTAGAGCATTGCGTGACC
Found at i:8285924 original size:30 final size:30
Alignment explanation
Indices: 8285888--8285948 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
8285878 GGAGGTGCCT
8285888 TTGAGTGTGAGGGACCAGTTGCACATATTC
1 TTGAGTGTGAGGGACCAGTTGCACATATTC
*
8285918 TTGAGTGTGAGGGACTAGTTGCACATATTC
1 TTGAGTGTGAGGGACCAGTTGCACATATTC
8285948 T
1 T
8285949 AGCAGGAGAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.23, C:0.15, G:0.30, T:0.33
Consensus pattern (30 bp):
TTGAGTGTGAGGGACCAGTTGCACATATTC
Found at i:8286789 original size:111 final size:111
Alignment explanation
Indices: 8286574--8287104 Score: 747
Period size: 111 Copynumber: 4.7 Consensus size: 111
8286564 GGTGTGTGAC
* * * *
8286574 TGACTTGTGCAATTCATGTGTTGTTTTGAAGTTTTTGTTCAATAGTTTTTTAGGCAGTGCGTGAC
1 TGACTTGTGCAATTCATGTGTTGTTTTGAGGCTTTTGTTCAGTAGTTTTTTAGGC-TTGCGTGAC
8286639 TGGTTTTTATATATTGCGTTACCTGTTGTAGCGAGAGTGGTGGCACG
65 TGGTTTTTATATATTGCGTTACCTGTTGTAGCGAGAGTGGTGGCACG
* *
8286686 TGACTTGTGCAATTCATATGTTGTTTTGAGGGTTTTGTTCAGTAGTTTTTTAGGCTTGCGTGACT
1 TGACTTGTGCAATTCATGTGTTGTTTTGAGGCTTTTGTTCAGTAGTTTTTTAGGCTTGCGTGACT
* * **
8286751 GGTTTTTATATATTGCGTTACCTATTGTAGCGAAAGTGGTGGCTTG
66 GGTTTTTATATATTGCGTTACCTGTTGTAGCGAGAGTGGTGGCACG
* *
8286797 TGACTTGTGCAATTCATGTATTGTTTTGATGCTTTTGTTCAGTAGTTTTTTAGGCTTGCGTGACT
1 TGACTTGTGCAATTCATGTGTTGTTTTGAGGCTTTTGTTCAGTAGTTTTTTAGGCTTGCGTGACT
*
8286862 GGTTTTTATATATTGCGTTACCTGTTGTAGCGTGAGTGGTGGCACG
66 GGTTTTTATATATTGCGTTACCTGTTGTAGCGAGAGTGGTGGCACG
** * * * *
8286908 TGACTTGTGCAATTCATGTGTTGTTTAAAGGCTTTTGTTCAGTAGTTTTTTAGGGTTGTGAGATT
1 TGACTTGTGCAATTCATGTGTTGTTTTGAGGCTTTTGTTCAGTAGTTTTTTAGGCTTGCGTGACT
* * *
8286973 GTTTTTTATATATTGTGTGACCTGTTGTTATGTATTACGAGAGTGGTGGCACG
66 GGTTTTTATATATTGCGTTACCTGTTG-TA-G-----CGAGAGTGGTGGCACG
* * * * *
8287026 TGACTTGTGTAATTCATATGTTGTTTTGAGGTTTTTGTTCAGTAGTTTTTTAGGATTGCGTTACT
1 TGACTTGTGCAATTCATGTGTTGTTTTGAGGCTTTTGTTCAGTAGTTTTTTAGGCTTGCGTGACT
8287091 GGTTTTTATATATT
66 GGTTTTTATATATT
8287105 ATGTGACTTG
Statistics
Matches: 371, Mismatches: 41, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
111 234 0.63
112 53 0.14
113 1 0.00
118 83 0.22
ACGTcount: A:0.17, C:0.10, G:0.26, T:0.46
Consensus pattern (111 bp):
TGACTTGTGCAATTCATGTGTTGTTTTGAGGCTTTTGTTCAGTAGTTTTTTAGGCTTGCGTGACT
GGTTTTTATATATTGCGTTACCTGTTGTAGCGAGAGTGGTGGCACG
Found at i:8287066 original size:118 final size:118
Alignment explanation
Indices: 8286895--8287190 Score: 349
Period size: 118 Copynumber: 2.5 Consensus size: 118
8286885 GTTGTAGCGT
*
8286895 GAGTGGTGGCACGTGACTTGTGCAATTCATGTGTTGTTTAAAGGCTTTTGTTCAGTAGTTTTTTA
1 GAGTGGTGGCACGTGACTTGTGCAATTCATATGTTGTTTAAAGGCTTTTGTTCAGTAGTTTTTTA
* * * * * *
8286960 GGGTTGTGAGATTGTTTTTTATATATTGTGTGACCTGTTGTTATGTATTACGA
66 GGATTGCGAGACTGGTTTTTATATATTATGTGACCTGTTGTTATATATTACGA
* ** *
8287013 GAGTGGTGGCACGTGACTTGTGTAATTCATATGTTGTTTTGAGGTTTTTGTTCAGTAGTTTTTTA
1 GAGTGGTGGCACGTGACTTGTGCAATTCATATGTTGTTTAAAGGCTTTTGTTCAGTAGTTTTTTA
** * *
8287078 GGATTGCGTTACTGGTTTTTATATATTATGTGACTTGTTGTTATATATTGCGA
66 GGATTGCGAGACTGGTTTTTATATATTATGTGACCTGTTGTTATATATTACGA
* * ** * *** * * * *
8287131 GAGCGATGGTGCATGACTTGTGCAATTCGCCTCTTGTTTAAGGGCATTTGTTCACTAGTT
1 GAGTGGTGGCACGTGACTTGTGCAATTCATATGTTGTTTAAAGGCTTTTGTTCAGTAGTT
8287191 ATTAGGCATT
Statistics
Matches: 147, Mismatches: 31, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
118 147 1.00
ACGTcount: A:0.19, C:0.10, G:0.26, T:0.45
Consensus pattern (118 bp):
GAGTGGTGGCACGTGACTTGTGCAATTCATATGTTGTTTAAAGGCTTTTGTTCAGTAGTTTTTTA
GGATTGCGAGACTGGTTTTTATATATTATGTGACCTGTTGTTATATATTACGA
Found at i:8292886 original size:23 final size:23
Alignment explanation
Indices: 8292856--8292906 Score: 102
Period size: 23 Copynumber: 2.2 Consensus size: 23
8292846 AAAATAGGTG
8292856 AGTCACGCAATGCAAGATCAACT
1 AGTCACGCAATGCAAGATCAACT
8292879 AGTCACGCAATGCAAGATCAACT
1 AGTCACGCAATGCAAGATCAACT
8292902 AGTCA
1 AGTCA
8292907 TGCGATCCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.39, C:0.25, G:0.18, T:0.18
Consensus pattern (23 bp):
AGTCACGCAATGCAAGATCAACT
Found at i:8292921 original size:23 final size:23
Alignment explanation
Indices: 8292856--8292935 Score: 88
Period size: 23 Copynumber: 3.5 Consensus size: 23
8292846 AAAATAGGTG
*
8292856 AGTCACGCAATGCAAGATCAACT
1 AGTCACGCAATCCAAGATCAACT
*
8292879 AGTCACGCAATGCAAGATCAACT
1 AGTCACGCAATCCAAGATCAACT
* * * * * *
8292902 AGTCATGCGATCCCATATCATCG
1 AGTCACGCAATCCAAGATCAACT
8292925 AGTCACGCAAT
1 AGTCACGCAAT
8292936 TCAATAAGAA
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 48 1.00
ACGTcount: A:0.35, C:0.28, G:0.17, T:0.20
Consensus pattern (23 bp):
AGTCACGCAATCCAAGATCAACT
Found at i:8295458 original size:23 final size:23
Alignment explanation
Indices: 8295426--8295482 Score: 69
Period size: 26 Copynumber: 2.3 Consensus size: 23
8295416 GTATCACATG
*
8295426 AATGAATACAAAGAATAATATGTA
1 AATG-ATACAAAGAATAATATGAA
8295450 AATGATACAACAAAGAATAATATGAA
1 AATGAT---ACAAAGAATAATATGAA
8295476 AATGATA
1 AATGATA
8295483 TAGAATAATG
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
23 3 0.10
24 4 0.14
26 22 0.76
ACGTcount: A:0.60, C:0.05, G:0.12, T:0.23
Consensus pattern (23 bp):
AATGATACAAAGAATAATATGAA
Found at i:8295464 original size:26 final size:26
Alignment explanation
Indices: 8295433--8295482 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
8295423 ATGAATGAAT
*
8295433 ACAAAGAATAATATGTAAATGATACA
1 ACAAAGAATAATATGAAAATGATACA
8295459 ACAAAGAATAATATGAAAATGATA
1 ACAAAGAATAATATGAAAATGATA
8295483 TAGAATAATG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.60, C:0.06, G:0.12, T:0.22
Consensus pattern (26 bp):
ACAAAGAATAATATGAAAATGATACA
Found at i:8297081 original size:45 final size:44
Alignment explanation
Indices: 8297032--8297136 Score: 103
Period size: 39 Copynumber: 2.5 Consensus size: 44
8297022 GCTCATGCAG
*
8297032 TGACTACGTCTACATTTGCATCGCCCGCTAGATCTCCAACTACAT
1 TGACTACGTCT-CATTTGCATCGCCCACTAGATCTCCAACTACAT
* * **
8297077 TGACT--G---CATCTGCATCGCCCACTGGATCTCCAACTGTAT
1 TGACTACGTCTCATTTGCATCGCCCACTAGATCTCCAACTACAT
*
8297116 TGACTACATCTGCATTTGCAT
1 TGACTACGTCT-CATTTGCAT
8297137 ATTCGTCTGT
Statistics
Matches: 47, Mismatches: 7, Indels: 12
0.71 0.11 0.18
Matches are distributed among these distances:
39 33 0.70
43 1 0.02
45 13 0.28
ACGTcount: A:0.23, C:0.31, G:0.15, T:0.30
Consensus pattern (44 bp):
TGACTACGTCTCATTTGCATCGCCCACTAGATCTCCAACTACAT
Found at i:8297091 original size:39 final size:39
Alignment explanation
Indices: 8297041--8297130 Score: 126
Period size: 39 Copynumber: 2.3 Consensus size: 39
8297031 GTGACTACGT
* *
8297041 CTACATTTGCATCGCCCGCTAGATCTCCAACTACATTGA
1 CTACATCTGCATCGCCCACTAGATCTCCAACTACATTGA
* * **
8297080 CTGCATCTGCATCGCCCACTGGATCTCCAACTGTATTGA
1 CTACATCTGCATCGCCCACTAGATCTCCAACTACATTGA
8297119 CTACATCTGCAT
1 CTACATCTGCAT
8297131 TTGCATATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.23, C:0.33, G:0.14, T:0.29
Consensus pattern (39 bp):
CTACATCTGCATCGCCCACTAGATCTCCAACTACATTGA
Found at i:8299040 original size:23 final size:22
Alignment explanation
Indices: 8298995--8299058 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
8298985 AATTTCCTAC
* *
8298995 AACAA-TAGTCACGCAATGCCT
1 AACAATTAGTCACACAATGACT
*
8299016 AATCAATTAGTCACACAATTACT
1 AA-CAATTAGTCACACAATGACT
* *
8299039 AACAATAAATCACACAATGA
1 AACAATTAGTCACACAATGA
8299059 TTTATAAACA
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
21 2 0.06
22 18 0.51
23 15 0.43
ACGTcount: A:0.47, C:0.23, G:0.08, T:0.22
Consensus pattern (22 bp):
AACAATTAGTCACACAATGACT
Found at i:8299167 original size:23 final size:22
Alignment explanation
Indices: 8299141--8299214 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 22
8299131 ACAATATTCG
*
8299141 CGCAATAACATTGAAACCAGTCA
1 CGCAATGAC-TTGAAACCAGTCA
* *
8299164 CGCAATGGCCTAGAAACCAGTCA
1 CGCAAT-GACTTGAAACCAGTCA
*
8299187 CGCAATGACTTAAAAACCAGTCA
1 CGCAATGACTT-GAAACCAGTCA
8299210 CGCAA
1 CGCAA
8299215 AGTTAAACCT
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
22 3 0.07
23 39 0.91
24 1 0.02
ACGTcount: A:0.41, C:0.28, G:0.16, T:0.15
Consensus pattern (22 bp):
CGCAATGACTTGAAACCAGTCA
Found at i:8299338 original size:13 final size:13
Alignment explanation
Indices: 8299320--8299345 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8299310 ATGCAATATC
8299320 TAACAAAGGGTCA
1 TAACAAAGGGTCA
8299333 TAACAAAGGGTCA
1 TAACAAAGGGTCA
8299346 CCTTTCTACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.23, T:0.15
Consensus pattern (13 bp):
TAACAAAGGGTCA
Found at i:8302813 original size:156 final size:156
Alignment explanation
Indices: 8302616--8302929 Score: 592
Period size: 156 Copynumber: 2.0 Consensus size: 156
8302606 CAGTCATACC
*
8302616 AACATTAATAATATTACGGTTAAAACAAACAAACGAAACAAACGTGAATAGTGTTTGATAATAAA
1 AACATTAATAATATTACGGTTAAAACAAACAAACAAAACAAACGTGAATAGTGTTTGATAATAAA
*
8302681 AAACTATAAACAAGCTTTAATTATTAAGAAAAGACAATTACCTAATTAATTATTAAGTCATGTTA
66 AAACTATAAACAAGCTTTAATTATTAAGAAAAGACAATTAACTAATTAATTATTAAGTCATGTTA
8302746 TAAACAGGAATTCATTCACTATTAAT
131 TAAACAGGAATTCATTCACTATTAAT
8302772 AACATTAATAATATTACGGTTAAAACAAACAAACAAAACAAACGTGAATAGTGTTTGATAATAAA
1 AACATTAATAATATTACGGTTAAAACAAACAAACAAAACAAACGTGAATAGTGTTTGATAATAAA
*
8302837 AAACTATAAACAAGCTTTAATTATTAAGAAAAGACATTTAACTAATTAATTATTAAGTCATGTTA
66 AAACTATAAACAAGCTTTAATTATTAAGAAAAGACAATTAACTAATTAATTATTAAGTCATGTTA
*
8302902 TAAACAGGAATTTATTCACTATTAAT
131 TAAACAGGAATTCATTCACTATTAAT
8302928 AA
1 AA
8302930 TTTATAAAAC
Statistics
Matches: 154, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
156 154 1.00
ACGTcount: A:0.49, C:0.11, G:0.09, T:0.31
Consensus pattern (156 bp):
AACATTAATAATATTACGGTTAAAACAAACAAACAAAACAAACGTGAATAGTGTTTGATAATAAA
AAACTATAAACAAGCTTTAATTATTAAGAAAAGACAATTAACTAATTAATTATTAAGTCATGTTA
TAAACAGGAATTCATTCACTATTAAT
Found at i:8303087 original size:375 final size:375
Alignment explanation
Indices: 8302397--8303214 Score: 1519
Period size: 375 Copynumber: 2.2 Consensus size: 375
8302387 GCAGCATACC
*
8302397 AACATTAATAATATTACGGTTAAAACAAACAAACAAAACAAATGTGAATAGTGTTTGATAATAAA
1 AACATTAATAATATTACGGTTAAAACAAACAAACAAAACAAACGTGAATAGTGTTTGATAATAAA
8302462 AAACTATAAACAAGCTTTAATTATTAAGAAAAGACATTTAACTAATTAATTATTAAGTCATGTTA
66 AAACTATAAACAAGCTTTAATTATTAAGAAAAGACATTTAACTAATTAATTATTAAGTCATGTTA
*
8302527 TAAACAGGAATTCATGCACTATTCATAATTTATAAAAAGCATGTGAGCTCCTTTATCATCACAGT
131 TAAACAGGAATTCATGCACTATTAATAATTTATAAAAAGCATGTGAGCTCCTTTATCATCACAGT
*
8302592 ACAATGCATTTAATCAGTCATACCAACATTAATAATATTACGGTTAAAACAAACAAACGAAACAA
196 ACAATGCATTTAATCAGTCATACCAACATTAATAATATTACGGTTAAAACAAACAAACAAAACAA
8302657 ACGTGAATAGTGTTTGATAATAAAAAACTATAAACAAGCTTTAATTATTAAGAAAAGACAATTAC
261 ACGTGAATAGTGTTTGATAATAAAAAACTATAAACAAGCTTTAATTATTAAGAAAAGACAATTAC
8302722 CTAATTAATTATTAAGTCATGTTATAAACAGGAATTCATTCACTATTAAT
326 CTAATTAATTATTAAGTCATGTTATAAACAGGAATTCATTCACTATTAAT
8302772 AACATTAATAATATTACGGTTAAAACAAACAAACAAAACAAACGTGAATAGTGTTTGATAATAAA
1 AACATTAATAATATTACGGTTAAAACAAACAAACAAAACAAACGTGAATAGTGTTTGATAATAAA
8302837 AAACTATAAACAAGCTTTAATTATTAAGAAAAGACATTTAACTAATTAATTATTAAGTCATGTTA
66 AAACTATAAACAAGCTTTAATTATTAAGAAAAGACATTTAACTAATTAATTATTAAGTCATGTTA
* * * *
8302902 TAAACAGGAATTTATTCACTATTAATAATTTATAAAACGCATGTGAGCTCCTTTATCATCACTGT
131 TAAACAGGAATTCATGCACTATTAATAATTTATAAAAAGCATGTGAGCTCCTTTATCATCACAGT
* *
8302967 ACAATGCATTTAATCATTCATACCAACATTAATAATATTAGGGTTAAAACAAACAAACAAAACAA
196 ACAATGCATTTAATCAGTCATACCAACATTAATAATATTACGGTTAAAACAAACAAACAAAACAA
*
8303032 ATGTGAATAGTGTTTGATAATAAAAAACTATAAACAAGCTTTAATTATTAAGAAAAGACAATTAC
261 ACGTGAATAGTGTTTGATAATAAAAAACTATAAACAAGCTTTAATTATTAAGAAAAGACAATTAC
8303097 CTAATTAATTATTAAGTCATGTTATAAACAGGAATTCATTCACTATTAAT
326 CTAATTAATTATTAAGTCATGTTATAAACAGGAATTCATTCACTATTAAT
* * *
8303147 AACATTAATAATATTACGGTTAAAACAAACAAACAAAACAAACGTGGATGGTGTTTGATCATAAA
1 AACATTAATAATATTACGGTTAAAACAAACAAACAAAACAAACGTGAATAGTGTTTGATAATAAA
8303212 AAA
66 AAA
8303215 GAAACAAACA
Statistics
Matches: 430, Mismatches: 13, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
375 430 1.00
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.31
Consensus pattern (375 bp):
AACATTAATAATATTACGGTTAAAACAAACAAACAAAACAAACGTGAATAGTGTTTGATAATAAA
AAACTATAAACAAGCTTTAATTATTAAGAAAAGACATTTAACTAATTAATTATTAAGTCATGTTA
TAAACAGGAATTCATGCACTATTAATAATTTATAAAAAGCATGTGAGCTCCTTTATCATCACAGT
ACAATGCATTTAATCAGTCATACCAACATTAATAATATTACGGTTAAAACAAACAAACAAAACAA
ACGTGAATAGTGTTTGATAATAAAAAACTATAAACAAGCTTTAATTATTAAGAAAAGACAATTAC
CTAATTAATTATTAAGTCATGTTATAAACAGGAATTCATTCACTATTAAT
Found at i:8303838 original size:2 final size:2
Alignment explanation
Indices: 8303833--8303874 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
8303823 GCTTTTTTTG
* *
8303833 AT AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8303875 TCTGATACCA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8309949 original size:21 final size:21
Alignment explanation
Indices: 8309925--8309964 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
8309915 AGTCCATCGC
8309925 CATCATC-CCTTAAACCCCCAA
1 CATCATCTCC-TAAACCCCCAA
*
8309946 CATCTTCTCCTAAACCCCC
1 CATCATCTCCTAAACCCCC
8309965 CGCATCTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 15 0.88
22 2 0.12
ACGTcount: A:0.28, C:0.50, G:0.00, T:0.23
Consensus pattern (21 bp):
CATCATCTCCTAAACCCCCAA
Found at i:8316470 original size:25 final size:23
Alignment explanation
Indices: 8316432--8316477 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 23
8316422 TAACGAATAA
8316432 ATTATAAATGATAAATATATTTTTT
1 ATTATAAATGAT-AAT-TATTTTTT
8316457 ATTATAATAT-ATAATTATTTT
1 ATTATAA-ATGATAATTATTTT
8316478 ATTTTTAACT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 6 0.30
24 3 0.15
25 9 0.45
26 2 0.10
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (23 bp):
ATTATAAATGATAATTATTTTTT
Found at i:8316479 original size:21 final size:18
Alignment explanation
Indices: 8316442--8316480 Score: 51
Period size: 21 Copynumber: 2.0 Consensus size: 18
8316432 ATTATAAATG
8316442 ATAAATATATTTTTTATT
1 ATAAATATATTTTTTATT
8316460 ATAATATATAATTATTTTATT
1 ATAA-ATAT-ATT-TTTTATT
8316481 TTTAACTACT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.22
19 4 0.22
20 3 0.17
21 7 0.39
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
ATAAATATATTTTTTATT
Found at i:8316532 original size:25 final size:26
Alignment explanation
Indices: 8316468--8316541 Score: 78
Period size: 25 Copynumber: 2.8 Consensus size: 26
8316458 TTATAATATA
* * *
8316468 TAATTATTTTATTTTTAACTACTTATT
1 TAATAATTTAATTTTTAAATA-TTATT
*
8316495 TAATAATTAAATTTTTAAATATT-TT
1 TAATAATTTAATTTTTAAATATTATT
* *
8316520 TTATAATTTAATTTTAAAATAT
1 TAATAATTTAATTTTTAAATAT
8316542 AAAATATTAA
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
25 21 0.52
26 2 0.05
27 17 0.43
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (26 bp):
TAATAATTTAATTTTTAAATATTATT
Found at i:8316567 original size:14 final size:15
Alignment explanation
Indices: 8316548--8316578 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
8316538 ATATAAAATA
8316548 TTAATTTTTAG-CTT
1 TTAATTTTTAGTCTT
8316562 TTAATTTTTAGTCTT
1 TTAATTTTTAGTCTT
8316577 TT
1 TT
8316579 TTTATTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.69
15 5 0.31
ACGTcount: A:0.19, C:0.06, G:0.06, T:0.68
Consensus pattern (15 bp):
TTAATTTTTAGTCTT
Found at i:8316585 original size:17 final size:17
Alignment explanation
Indices: 8316560--8316601 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
8316550 AATTTTTAGC
*
8316560 TTTTAATTTTTAGTCTT
1 TTTTTATTTTTAGTCTT
**
8316577 TTTTTATTTTTTTTCTT
1 TTTTTATTTTTAGTCTT
8316594 TTTTTATT
1 TTTTTATT
8316602 GTTGTATTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.12, C:0.05, G:0.02, T:0.81
Consensus pattern (17 bp):
TTTTTATTTTTAGTCTT
Found at i:8318148 original size:7 final size:7
Alignment explanation
Indices: 8318136--8318161 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
8318126 TTAATGGTTC
8318136 GGGTTTA
1 GGGTTTA
8318143 GGGTTTA
1 GGGTTTA
8318150 GGGTTTA
1 GGGTTTA
8318157 GGGTT
1 GGGTT
8318162 AAATATACTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.46, T:0.42
Consensus pattern (7 bp):
GGGTTTA
Found at i:8318883 original size:38 final size:38
Alignment explanation
Indices: 8318832--8318910 Score: 149
Period size: 38 Copynumber: 2.1 Consensus size: 38
8318822 AGAACAAAGA
*
8318832 AAACCTAATCTTGTATACTAAAAGCTGAGCAGCAGCTT
1 AAACCTAATCTTGTATACTAAAAGATGAGCAGCAGCTT
8318870 AAACCTAATCTTGTATACTAAAAGATGAGCAGCAGCTT
1 AAACCTAATCTTGTATACTAAAAGATGAGCAGCAGCTT
8318908 AAA
1 AAA
8318911 AAATCAAATA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.41, C:0.19, G:0.15, T:0.25
Consensus pattern (38 bp):
AAACCTAATCTTGTATACTAAAAGATGAGCAGCAGCTT
Found at i:8324720 original size:2 final size:2
Alignment explanation
Indices: 8324715--8324754 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
8324705 TAGAAAGTGA
8324715 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8324755 GTATGTATGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8324767 original size:12 final size:12
Alignment explanation
Indices: 8324761--8324787 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
8324751 ATATGTATGT
8324761 ATGTATGAATGA
1 ATGTATGAATGA
8324773 ATGTATGAATGA
1 ATGTATGAATGA
8324785 ATG
1 ATG
8324788 GTAAAATAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.26, T:0.33
Consensus pattern (12 bp):
ATGTATGAATGA
Found at i:8326683 original size:15 final size:16
Alignment explanation
Indices: 8326649--8326687 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
8326639 CAGCGGCAAG
*
8326649 AAAGAATAAGAAAAAGA
1 AAAGAA-AAGAAAAACA
8326666 AAAGAAAA-AAAAACA
1 AAAGAAAAGAAAAACA
8326681 AAAGAAA
1 AAAGAAA
8326688 GGGTCTACAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 13 0.62
16 2 0.10
17 6 0.29
ACGTcount: A:0.82, C:0.03, G:0.13, T:0.03
Consensus pattern (16 bp):
AAAGAAAAGAAAAACA
Found at i:8333427 original size:2 final size:2
Alignment explanation
Indices: 8333420--8333452 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
8333410 GTTTTGGACT
8333420 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
8333453 CTTCCCATGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:8342422 original size:23 final size:23
Alignment explanation
Indices: 8342365--8342429 Score: 62
Period size: 23 Copynumber: 2.8 Consensus size: 23
8342355 TATATAATTG
*
8342365 TATAAATATATTATATATACATATA
1 TATAAAT-TA-TATATAAACATATA
* *
8342390 TTTAATTTATATATAAACAT-TA
1 TATAAATTATATATAAACATATA
8342412 CTATAAATTATA-ATAAAC
1 -TATAAATTATATATAAAC
8342430 TTTATTTAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
22 8 0.24
23 19 0.56
24 2 0.06
25 5 0.15
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (23 bp):
TATAAATTATATATAAACATATA
Found at i:8348783 original size:17 final size:17
Alignment explanation
Indices: 8348761--8348799 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
8348751 GTGCATTTTT
8348761 AGACATGAAAATTGTAA
1 AGACATGAAAATTGTAA
8348778 AGACATGAAAATTGTAA
1 AGACATGAAAATTGTAA
8348795 AGACA
1 AGACA
8348800 AGGTTACGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.54, C:0.08, G:0.18, T:0.21
Consensus pattern (17 bp):
AGACATGAAAATTGTAA
Found at i:8364317 original size:37 final size:37
Alignment explanation
Indices: 8364276--8364346 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 37
8364266 CAGTAGTTTG
*
8364276 ACCAAAATCAAATAGAGCCCTTGTACAATATATGCCA
1 ACCAAAATCAAATAAAGCCCTTGTACAATATATGCCA
**
8364313 ACCAAAATCAGCTAAAGCCCTTGTACAATATATG
1 ACCAAAATCAAATAAAGCCCTTGTACAATATATG
8364347 ACAATTACCA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.42, C:0.24, G:0.11, T:0.23
Consensus pattern (37 bp):
ACCAAAATCAAATAAAGCCCTTGTACAATATATGCCA
Found at i:8365106 original size:21 final size:22
Alignment explanation
Indices: 8365085--8365129 Score: 63
Period size: 24 Copynumber: 2.0 Consensus size: 22
8365075 GAAGTTGACT
8365085 TGCACCAATAGCAGCTTCACTTGG
1 TGCACCAATAGCAGCTTCAC-T-G
*
8365109 TGCACCAGTAGCAGCTTCACT
1 TGCACCAATAGCAGCTTCACT
8365130 CGCTCTACTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.24
Consensus pattern (22 bp):
TGCACCAATAGCAGCTTCACTG
Found at i:8368398 original size:21 final size:21
Alignment explanation
Indices: 8368356--8368430 Score: 87
Period size: 21 Copynumber: 3.6 Consensus size: 21
8368346 AGGCCATCAG
* * *
8368356 CAGCTTTAAATTGACCTCCAA
1 CAGCTTTAGATGGGCCTCCAA
* *
8368377 CAACTTTAGATGGGCCTTCAA
1 CAGCTTTAGATGGGCCTCCAA
*
8368398 CAGCTTTAAATGGGCCTCCAA
1 CAGCTTTAGATGGGCCTCCAA
*
8368419 CAGTTTTAGATG
1 CAGCTTTAGATG
8368431 ACCCACCAGC
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 44 1.00
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.29
Consensus pattern (21 bp):
CAGCTTTAGATGGGCCTCCAA
Found at i:8368403 original size:42 final size:42
Alignment explanation
Indices: 8368347--8368515 Score: 133
Period size: 42 Copynumber: 4.0 Consensus size: 42
8368337 ACTTCAGAAA
* * *
8368347 GGCCATCAGCAGCTTTAAATTGACCTCCAACAACTTTAGATG
1 GGCCACCAACAGCTTCAAATTGACCTCCAACAACTTTAGATG
** * * * **
8368389 GGCCTTCAACAGCTTTAAATGGGCCTCCAACAGTTTTAGATG
1 GGCCACCAACAGCTTCAAATTGACCTCCAACAACTTTAGATG
** * * * * *
8368431 ACCCACCAGCAACTTCAAATT-AGCCTCTAGCAACTTCAGATG
1 GGCCACCAACAGCTTCAAATTGA-CCTCCAACAACTTTAGATG
* * * *
8368473 AGCCACCAACAGCTTCAAATTGGCCTCCAATAGCTTTAGATG
1 GGCCACCAACAGCTTCAAATTGACCTCCAACAACTTTAGATG
8368515 G
1 G
8368516 ACCTGCAGCT
Statistics
Matches: 95, Mismatches: 30, Indels: 4
0.74 0.23 0.03
Matches are distributed among these distances:
42 95 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (42 bp):
GGCCACCAACAGCTTCAAATTGACCTCCAACAACTTTAGATG
Found at i:8368488 original size:21 final size:21
Alignment explanation
Indices: 8368395--8368492 Score: 61
Period size: 21 Copynumber: 4.7 Consensus size: 21
8368385 GATGGGCCTT
* * *
8368395 CAACAGCTTTAAATGGGCCTC
1 CAACAGCTTCAAATGAGCCAC
* * * *
8368416 CAACAGTTTTAGATGACCCAC
1 CAACAGCTTCAAATGAGCCAC
* * * *
8368437 CAGCAACTTCAAATTAGCCTC
1 CAACAGCTTCAAATGAGCCAC
* * * *
8368458 TAGCAACTTCAGATGAGCCAC
1 CAACAGCTTCAAATGAGCCAC
8368479 CAACAGCTTCAAAT
1 CAACAGCTTCAAAT
8368493 TGGCCTCCAA
Statistics
Matches: 56, Mismatches: 21, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
21 56 1.00
ACGTcount: A:0.34, C:0.30, G:0.14, T:0.22
Consensus pattern (21 bp):
CAACAGCTTCAAATGAGCCAC
Found at i:8370296 original size:32 final size:32
Alignment explanation
Indices: 8370260--8370320 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
8370250 AATTCAAGCA
*
8370260 TTCAGGCATGAAAGCTTTCAAGTTTTGTCAAT
1 TTCAGGCATGAAAGCTTTCAAGGTTTGTCAAT
* * *
8370292 TTCAGGCTTGGAATCTTTCAAGGTTTGTC
1 TTCAGGCATGAAAGCTTTCAAGGTTTGTC
8370321 TGTTTTAGGC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.23, C:0.16, G:0.21, T:0.39
Consensus pattern (32 bp):
TTCAGGCATGAAAGCTTTCAAGGTTTGTCAAT
Found at i:8370457 original size:30 final size:30
Alignment explanation
Indices: 8370421--8370492 Score: 90
Period size: 30 Copynumber: 2.4 Consensus size: 30
8370411 TTAGGGTTTA
8370421 GGTTTAGTGTTTAGGCTAGATTTCAATCTT
1 GGTTTAGTGTTTAGGCTAGATTTCAATCTT
* * * * *
8370451 GGTTTAGTGTTTAGGTTGGGTTTTACTCTT
1 GGTTTAGTGTTTAGGCTAGATTTCAATCTT
*
8370481 GGTTTACTGTTT
1 GGTTTAGTGTTT
8370493 TCTCTCGATT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.14, C:0.08, G:0.26, T:0.51
Consensus pattern (30 bp):
GGTTTAGTGTTTAGGCTAGATTTCAATCTT
Found at i:8370901 original size:18 final size:18
Alignment explanation
Indices: 8370878--8370913 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
8370868 GTCAATTACA
8370878 CAATGTTTGCCAAGTCAG
1 CAATGTTTGCCAAGTCAG
*
8370896 CAATGTTTGCCATGTCAG
1 CAATGTTTGCCAAGTCAG
8370914 AACTGATGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (18 bp):
CAATGTTTGCCAAGTCAG
Found at i:8379837 original size:20 final size:20
Alignment explanation
Indices: 8379812--8379849 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
8379802 AATCTGCCTT
8379812 TATTGTGATAAT-TAAACAGC
1 TATTGTGA-AATGTAAACAGC
8379832 TATTGTGAAATGTAAACA
1 TATTGTGAAATGTAAACA
8379850 AAAGAACTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.42, C:0.08, G:0.16, T:0.34
Consensus pattern (20 bp):
TATTGTGAAATGTAAACAGC
Found at i:8390071 original size:2 final size:2
Alignment explanation
Indices: 8390064--8390093 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
8390054 AAACCCACCG
*
8390064 CT CT CT CT CT CT CT CT CT CT TT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
8390094 TTTTTTTCCG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (2 bp):
CT
Found at i:8390281 original size:3 final size:3
Alignment explanation
Indices: 8390273--8390299 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
8390263 ATGTAGAAAG
8390273 AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA
8390300 GGATACACGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:8391134 original size:31 final size:31
Alignment explanation
Indices: 8391096--8391177 Score: 146
Period size: 31 Copynumber: 2.6 Consensus size: 31
8391086 AAATAGTTTG
8391096 CAATTCAGTGTCTTCTATGTTATTGATATCT
1 CAATTCAGTGTCTTCTATGTTATTGATATCT
*
8391127 CAATTCAGTGTCTTCTATTTTATTGATATCT
1 CAATTCAGTGTCTTCTATGTTATTGATATCT
*
8391158 CAATTCAGTGTCCTCTATGT
1 CAATTCAGTGTCTTCTATGT
8391178 CGCCTTCTTT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 48 1.00
ACGTcount: A:0.22, C:0.18, G:0.12, T:0.48
Consensus pattern (31 bp):
CAATTCAGTGTCTTCTATGTTATTGATATCT
Found at i:8402410 original size:30 final size:30
Alignment explanation
Indices: 8402374--8402431 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
8402364 CTTAAATTAT
*
8402374 AAATAAAATATTA-ATATTTAAAATAAAATA
1 AAATAAAAAATTATATA-TTAAAATAAAATA
*
8402404 AAATAAAAAATTATATATTATAATAAAA
1 AAATAAAAAATTATATATTAAAATAAAA
8402432 AATATATTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 22 0.88
31 3 0.12
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (30 bp):
AAATAAAAAATTATATATTAAAATAAAATA
Found at i:8413210 original size:42 final size:42
Alignment explanation
Indices: 8413146--8413226 Score: 144
Period size: 42 Copynumber: 1.9 Consensus size: 42
8413136 TAAGAAGCCA
*
8413146 ATTCAAAACTTTGCCATCTTAACAACAAATTCTGTCAGCTTG
1 ATTCAAAACTTTGCCATCTTAACAACAAATTCTGCCAGCTTG
*
8413188 ATTCAAAACTTTGCCATGTTAACAACAAATTCTGCCAGC
1 ATTCAAAACTTTGCCATCTTAACAACAAATTCTGCCAGC
8413227 ATGGTATCTG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.35, C:0.25, G:0.10, T:0.31
Consensus pattern (42 bp):
ATTCAAAACTTTGCCATCTTAACAACAAATTCTGCCAGCTTG
Found at i:8413223 original size:21 final size:21
Alignment explanation
Indices: 8413157--8413224 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
8413147 TTCAAAACTT
*
8413157 TGCCATCTTAACAACAAATTC
1 TGCCATGTTAACAACAAATTC
* * *
8413178 TGTCA-GCTTGATTCAA-AACTT-
1 TGCCATG-TT-A-ACAACAAATTC
8413199 TGCCATGTTAACAACAAATTC
1 TGCCATGTTAACAACAAATTC
8413220 TGCCA
1 TGCCA
8413225 GCATGGTATC
Statistics
Matches: 34, Mismatches: 7, Indels: 12
0.64 0.13 0.23
Matches are distributed among these distances:
19 3 0.09
20 5 0.15
21 17 0.50
22 6 0.18
23 3 0.09
ACGTcount: A:0.34, C:0.25, G:0.10, T:0.31
Consensus pattern (21 bp):
TGCCATGTTAACAACAAATTC
Found at i:8436427 original size:39 final size:39
Alignment explanation
Indices: 8436370--8436444 Score: 132
Period size: 39 Copynumber: 1.9 Consensus size: 39
8436360 TCTCTATTTA
* *
8436370 TTCATCTGAATTCTGCAATAAAAACACCTTGAAGAATCT
1 TTCATCTGAATTCCGCAATAAAAACAACTTGAAGAATCT
8436409 TTCATCTGAATTCCGCAATAAAAACAACTTGAAGAA
1 TTCATCTGAATTCCGCAATAAAAACAACTTGAAGAA
8436445 CCAACACAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.41, C:0.20, G:0.11, T:0.28
Consensus pattern (39 bp):
TTCATCTGAATTCCGCAATAAAAACAACTTGAAGAATCT
Found at i:8437821 original size:1 final size:1
Alignment explanation
Indices: 8437810--8437839 Score: 51
Period size: 1 Copynumber: 30.0 Consensus size: 1
8437800 GCCGGTTTCA
*
8437810 TTTTCTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
8437840 GTGGCAAAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:0.03, G:0.00, T:0.97
Consensus pattern (1 bp):
T
Found at i:8441189 original size:151 final size:151
Alignment explanation
Indices: 8440913--8441216 Score: 504
Period size: 151 Copynumber: 2.0 Consensus size: 151
8440903 TTAAAAAAAA
* *
8440913 GAATTTGTTGAATACTTGGGTGGTTTTCTTCTGGGTTTAACTTGTTATGTAAAATCTAGCTTTGA
1 GAATTTGTTGAATACTTCGGTGGTTTTCTTCTGGGCTTAACTTGTTATGTAAAATCTAGCTTTGA
* *
8440978 TTTTGGCTAATTGTGTAAAGAACTAATCTAAGTTGCGTAGTTTTTGTAGTGTTAGACATGCTTAC
66 TCTTGGCTAATTATGTAAAGAACTAATCTAAGTTGCGTAGTTTTTGTAGTGTTAGACATGCTTAC
8441043 TTCCTCCTTAATGTTCATTTT
131 TTCCTCCTTAATGTTCATTTT
*
8441064 GAATTTGTTGAATAGTTCGGTGGTTTTCTTCTGGGCTTAA-TTGGTTATGTAAAATCTAGCTTTG
1 GAATTTGTTGAATACTTCGGTGGTTTTCTTCTGGGCTTAACTT-GTTATGTAAAATCTAGCTTTG
* * *
8441128 ATCTTGGCTTATTATGTAAAGACCTAATCTAATTTGCGTAGTTTTTGTAGTGTTATG-CATGCTT
65 ATCTTGGCTAATTATGTAAAGAACTAATCTAAGTTGCGTAGTTTTTGTAGTGTTA-GACATGCTT
8441192 ACTTCCTCCTTAATGTTCATTTT
129 ACTTCCTCCTTAATGTTCATTTT
8441215 GA
1 GA
8441217 TGTATAAATG
Statistics
Matches: 143, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
150 2 0.01
151 140 0.98
152 1 0.01
ACGTcount: A:0.22, C:0.12, G:0.20, T:0.46
Consensus pattern (151 bp):
GAATTTGTTGAATACTTCGGTGGTTTTCTTCTGGGCTTAACTTGTTATGTAAAATCTAGCTTTGA
TCTTGGCTAATTATGTAAAGAACTAATCTAAGTTGCGTAGTTTTTGTAGTGTTAGACATGCTTAC
TTCCTCCTTAATGTTCATTTT
Done.