Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41236440
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2030548 characters in sequence are not A, C, G, or T
File 20 of 106
Found at i:8849705 original size:10 final size:10
Alignment explanation
Indices: 8849685--8849718 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
8849675 TTATTTAAAT
8849685 AAATT-AAAA
1 AAATTAAAAA
8849694 AAATTAAAAA
1 AAATTAAAAA
*
8849704 AAGTTAAAAA
1 AAATTAAAAA
8849714 AAATT
1 AAATT
8849719 TGGTTAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 5 0.23
10 17 0.77
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.24
Consensus pattern (10 bp):
AAATTAAAAA
Found at i:8849712 original size:19 final size:18
Alignment explanation
Indices: 8849679--8849715 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
8849669 AATATATTAT
*
8849679 TTAAATAAATTAAAAAAA
1 TTAAAAAAATTAAAAAAA
8849697 TTAAAAAAAGTTAAAAAAA
1 TTAAAAAAA-TTAAAAAAA
8849716 ATTTGGTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (18 bp):
TTAAAAAAATTAAAAAAA
Found at i:8850265 original size:17 final size:16
Alignment explanation
Indices: 8850243--8850275 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
8850233 TCATTTTTTT
8850243 CTATTTATATTATTTAA
1 CTATTTATA-TATTTAA
8850260 CTATTTATATATTTAA
1 CTATTTATATATTTAA
8850276 TCATTGTATG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (16 bp):
CTATTTATATATTTAA
Found at i:8850884 original size:17 final size:17
Alignment explanation
Indices: 8850851--8850884 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8850841 AAAAGTAATT
* *
8850851 TTTTTTAAAGAATAAAA
1 TTTTTTAAAAAAGAAAA
8850868 TTTTTTAAAAAAGAAAA
1 TTTTTTAAAAAAGAAAA
8850885 ACTCTTATGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (17 bp):
TTTTTTAAAAAAGAAAA
Found at i:8866254 original size:2 final size:2
Alignment explanation
Indices: 8866249--8866294 Score: 85
Period size: 2 Copynumber: 23.5 Consensus size: 2
8866239 AGTGTGTGTG
8866249 TA TA TA TA TA TA TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8866290 TA TA T
1 TA TA T
8866295 TTCTTCATCC
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 42 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8871370 original size:27 final size:27
Alignment explanation
Indices: 8871314--8871370 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 27
8871304 ATTTAAAATT
* *
8871314 TATTTATGTAATTTATTTGTTTATTTA
1 TATTTATGTAATTTATTTGTTTAGTAA
8871341 TATTTGATGTAATTTATTTGTTT-GTAA
1 TATTT-ATGTAATTTATTTGTTTAGTAA
8871368 TAT
1 TAT
8871371 GTTTTTATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 10 0.37
28 17 0.63
ACGTcount: A:0.26, C:0.00, G:0.11, T:0.63
Consensus pattern (27 bp):
TATTTATGTAATTTATTTGTTTAGTAA
Found at i:8875507 original size:3 final size:3
Alignment explanation
Indices: 8875492--8875530 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
8875482 ACTAATAGTA
*
8875492 ATT ATT ATC ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
8875531 TTGAAAGGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:8879115 original size:15 final size:15
Alignment explanation
Indices: 8879097--8879126 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8879087 TATTAATATT
8879097 TTAAAATATAAATAA
1 TTAAAATATAAATAA
*
8879112 TTAAATTATAAATAA
1 TTAAAATATAAATAA
8879127 AATAATAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
TTAAAATATAAATAA
Found at i:8879131 original size:20 final size:21
Alignment explanation
Indices: 8879078--8879169 Score: 66
Period size: 22 Copynumber: 4.4 Consensus size: 21
8879068 ATATTTAAAT
* *
8879078 TAAATTAAAT-ATTAATATTT
1 TAAATAAAATAATTAATATTA
8879098 TAAAATATAAATAATTAA-ATTA
1 T-AAATA-AAATAATTAATATTA
8879120 TAAATAAAATAA-TAATATT-
1 TAAATAAAATAATTAATATTA
* * * *
8879139 TAAAATATCAATTATTAACATTT
1 T-AAATA-AAATAATTAATATTA
8879162 TAAATAAA
1 TAAATAAA
8879170 TTATCAATTA
Statistics
Matches: 58, Mismatches: 6, Indels: 15
0.73 0.08 0.19
Matches are distributed among these distances:
19 4 0.07
20 15 0.26
21 14 0.24
22 19 0.33
23 6 0.10
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (21 bp):
TAAATAAAATAATTAATATTA
Found at i:8879156 original size:41 final size:43
Alignment explanation
Indices: 8879078--8879169 Score: 125
Period size: 42 Copynumber: 2.2 Consensus size: 43
8879068 ATATTTAAAT
* *
8879078 TAAATTAAATATTAATATTTTAAAATATAAATAATTAA-ATTA
1 TAAATAAAATAATAATATTTTAAAATATAAATAATTAACATTA
* * *
8879120 TAAATAAAATAATAATA-TTTAAAATATCAATTATTAACATTT
1 TAAATAAAATAATAATATTTTAAAATATAAATAATTAACATTA
8879162 TAAATAAA
1 TAAATAAA
8879170 TTATCAATTA
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
41 18 0.41
42 26 0.59
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (43 bp):
TAAATAAAATAATAATATTTTAAAATATAAATAATTAACATTA
Found at i:8879169 original size:27 final size:27
Alignment explanation
Indices: 8879139--8879192 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
8879129 TAATAATATT
8879139 TAAAATATCAATTATTAACATTTTAAA
1 TAAAATATCAATTATTAACATTTTAAA
* *
8879166 TAAATTATCAATTATTAATATTTTAAA
1 TAAAATATCAATTATTAACATTTTAAA
8879193 AAATAAGATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (27 bp):
TAAAATATCAATTATTAACATTTTAAA
Found at i:8879244 original size:24 final size:24
Alignment explanation
Indices: 8879217--8879279 Score: 85
Period size: 22 Copynumber: 2.7 Consensus size: 24
8879207 TTAATCATAA
8879217 TAATATTTAAATTAAATAAAATAT
1 TAATATTTAAATTAAATAAAATAT
* *
8879241 TAATATTTAAATT--ATTAATTAT
1 TAATATTTAAATTAAATAAAATAT
*
8879263 TAATATTTTAATTAAAT
1 TAATATTTAAATTAAAT
8879280 TCTAGATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
22 19 0.56
24 15 0.44
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (24 bp):
TAATATTTAAATTAAATAAAATAT
Found at i:8879486 original size:27 final size:27
Alignment explanation
Indices: 8879448--8879499 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
8879438 ACCAAGCTAA
* *
8879448 ATAATAATTATTTTATTTTATTTTTGC
1 ATAATAACTATTATATTTTATTTTTGC
8879475 ATAATAACTATTATATTTTATTTTT
1 ATAATAACTATTATATTTTATTTTT
8879500 ATTTATTCCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.62
Consensus pattern (27 bp):
ATAATAACTATTATATTTTATTTTTGC
Found at i:8885165 original size:24 final size:24
Alignment explanation
Indices: 8885138--8885186 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
8885128 TCCTTCCCTA
8885138 CCACTAACTCCTATGACAAAATTT
1 CCACTAACTCCTATGACAAAATTT
8885162 CCACTAACTCCTATGACAAAATTT
1 CCACTAACTCCTATGACAAAATTT
8885186 C
1 C
8885187 GATCTGGCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.31, G:0.04, T:0.29
Consensus pattern (24 bp):
CCACTAACTCCTATGACAAAATTT
Found at i:8890876 original size:15 final size:15
Alignment explanation
Indices: 8890837--8890884 Score: 78
Period size: 15 Copynumber: 3.2 Consensus size: 15
8890827 TGTCATTGCC
**
8890837 TAAGGTTTTACTGTT
1 TAAGGTTTTGTTGTT
8890852 TAAGGTTTTGTTGTT
1 TAAGGTTTTGTTGTT
8890867 TAAGGTTTTGTTGTT
1 TAAGGTTTTGTTGTT
8890882 TAA
1 TAA
8890885 CGCATTATTC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.19, C:0.02, G:0.23, T:0.56
Consensus pattern (15 bp):
TAAGGTTTTGTTGTT
Found at i:8890929 original size:30 final size:31
Alignment explanation
Indices: 8890895--8890975 Score: 103
Period size: 30 Copynumber: 2.7 Consensus size: 31
8890885 CGCATTATTC
8890895 TCTAAGGTGTTATTACCTAAGA-AGTTACTG
1 TCTAAGGTGTTATTACCTAAGAGAGTTACTG
*** *
8890925 TCTAAGACATTATTACCTAA-AGCGTTACTG
1 TCTAAGGTGTTATTACCTAAGAGAGTTACTG
*
8890955 TCTAAGGTGTTATTGCCTAAG
1 TCTAAGGTGTTATTACCTAAG
8890976 GTATTATGGC
Statistics
Matches: 41, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
29 1 0.02
30 40 0.98
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.36
Consensus pattern (31 bp):
TCTAAGGTGTTATTACCTAAGAGAGTTACTG
Found at i:8891249 original size:36 final size:35
Alignment explanation
Indices: 8891198--8891284 Score: 113
Period size: 36 Copynumber: 2.5 Consensus size: 35
8891188 GAATAATGAA
* *
8891198 AACAATTAGAACAAGTGAAGAACTACTTCATACCAG
1 AACAACTAGAGCAAGTGAAGAACTACTTCAT-CCAG
* * *
8891234 AACAACTAGAGCAAGTGAAGCATTACTTCATGCAG
1 AACAACTAGAGCAAGTGAAGAACTACTTCATCCAG
8891269 AACAACTA-AGCAAGTG
1 AACAACTAGAGCAAGTG
8891285 GAGCACCACT
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
34 8 0.17
35 11 0.24
36 27 0.59
ACGTcount: A:0.45, C:0.20, G:0.17, T:0.18
Consensus pattern (35 bp):
AACAACTAGAGCAAGTGAAGAACTACTTCATCCAG
Found at i:8891301 original size:34 final size:34
Alignment explanation
Indices: 8891209--8891311 Score: 116
Period size: 34 Copynumber: 3.0 Consensus size: 34
8891199 ACAATTAGAA
* * *
8891209 CAAGTGAAGAACTACTTCATACCAGAACAACTAGAG
1 CAAGTGAAGCACCACTTCAT-GCAGAACAACTA-AG
**
8891245 CAAGTGAAGCATTACTTCATGCAGAACAACTAAG
1 CAAGTGAAGCACCACTTCATGCAGAACAACTAAG
* * *
8891279 CAAGTGGAGCACCACTTTATGCAAAACAACTAA
1 CAAGTGAAGCACCACTTCATGCAGAACAACTAA
8891312 TACTAGTGAA
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
34 30 0.51
35 11 0.19
36 18 0.31
ACGTcount: A:0.43, C:0.22, G:0.17, T:0.18
Consensus pattern (34 bp):
CAAGTGAAGCACCACTTCATGCAGAACAACTAAG
Found at i:8897249 original size:22 final size:22
Alignment explanation
Indices: 8897221--8897270 Score: 91
Period size: 22 Copynumber: 2.3 Consensus size: 22
8897211 ATATCATCAA
8897221 AATAAACCACCACGAATTTTCC
1 AATAAACCACCACGAATTTTCC
*
8897243 AATAAACCACCATGAATTTTCC
1 AATAAACCACCACGAATTTTCC
8897265 AATAAA
1 AATAAA
8897271 AGGTTTCAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.46, C:0.26, G:0.04, T:0.24
Consensus pattern (22 bp):
AATAAACCACCACGAATTTTCC
Found at i:8901874 original size:58 final size:58
Alignment explanation
Indices: 8901810--8902006 Score: 223
Period size: 58 Copynumber: 3.4 Consensus size: 58
8901800 ATGACACATA
* * *
8901810 ACATGGTGGGAATGTGTGGCAGGGCTGTGACACGGTAGGGTTTAAAATTTGTGACACG
1 ACATGGTGGGAATGTGTGACACGGCTGTGACACGGCAGGGTTTAAAATTTGTGACACG
* * * *
8901868 ACATGGTTGGAATGTGTGACACGGTTGTGACACGGCAGGGTTTAGAGTTTGTGACACG
1 ACATGGTGGGAATGTGTGACACGGCTGTGACACGGCAGGGTTTAAAATTTGTGACACG
* * * * * * * * *
8901926 CCATGGTGGGAATGTGTGACACAGTTGTGACACGTCAGCGTTCAAAGTTGGTGACATG
1 ACATGGTGGGAATGTGTGACACGGCTGTGACACGGCAGGGTTTAAAATTTGTGACACG
* * *
8901984 CCATGGAGGGAATTTGTGACACG
1 ACATGGTGGGAATGTGTGACACG
8902007 CTAGAGTTTA
Statistics
Matches: 120, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
58 120 1.00
ACGTcount: A:0.24, C:0.15, G:0.36, T:0.26
Consensus pattern (58 bp):
ACATGGTGGGAATGTGTGACACGGCTGTGACACGGCAGGGTTTAAAATTTGTGACACG
Found at i:8902004 original size:47 final size:47
Alignment explanation
Indices: 8901950--8902161 Score: 248
Period size: 47 Copynumber: 4.5 Consensus size: 47
8901940 TGTGACACAG
* *
8901950 TTGTGACACGTCAGCGTTCAAAGTTGGTGACATGCCATGGAGGGAAT
1 TTGTGACACGTCAGCGTTCAGAGTTGGTGACACGCCATGGAGGGAAT
* * *
8901997 TTGTGACACG-CTAGAGTTTAGAGTTGGTGACACACCATGGAGGGAAT
1 TTGTGACACGTC-AGCGTTCAGAGTTGGTGACACGCCATGGAGGGAAT
* * * * *
8902044 CTGTGACCCGTCAACGTTCAAAGTTGGTGACACGCCACGGAGGGAAT
1 TTGTGACACGTCAGCGTTCAGAGTTGGTGACACGCCATGGAGGGAAT
* * * * * *
8902091 CTGTGAAATGCCAGCGTTCAGAG-TCGTGACACGCCATGGAGGAAAT
1 TTGTGACACGTCAGCGTTCAGAGTTGGTGACACGCCATGGAGGGAAT
*
8902137 TTGTGACACGTCAGTGTTCAGAGTT
1 TTGTGACACGTCAGCGTTCAGAGTT
8902162 TTTCAGACTC
Statistics
Matches: 135, Mismatches: 27, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
46 39 0.29
47 95 0.70
48 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (47 bp):
TTGTGACACGTCAGCGTTCAGAGTTGGTGACACGCCATGGAGGGAAT
Found at i:8902395 original size:31 final size:31
Alignment explanation
Indices: 8902212--8902393 Score: 274
Period size: 31 Copynumber: 5.9 Consensus size: 31
8902202 AGTGTGTGAC
* *
8902212 ACGTTATATGCATGACGTGTTAACACAGTTT
1 ACGTTATATGCATGGCGTGTTACCACAGTTT
* *
8902243 GCGTTATATGTATGGCGTGTTACCACAGTTT
1 ACGTTATATGCATGGCGTGTTACCACAGTTT
* *
8902274 ACGTTATATGCATGGTGTGTTACCATAGTTT
1 ACGTTATATGCATGGCGTGTTACCACAGTTT
*
8902305 ACGTTATATGCATGGCGTGTTACCACATTTT
1 ACGTTATATGCATGGCGTGTTACCACAGTTT
*
8902336 ACGTTATATGCATGGCGTGTTACCACATTTT
1 ACGTTATATGCATGGCGTGTTACCACAGTTT
* *
8902367 ACATTATATGCATGGCGTGTTGCCACA
1 ACGTTATATGCATGGCGTGTTACCACA
8902394 TTATGGGTTA
Statistics
Matches: 138, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 138 1.00
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.37
Consensus pattern (31 bp):
ACGTTATATGCATGGCGTGTTACCACAGTTT
Found at i:8904067 original size:145 final size:145
Alignment explanation
Indices: 8903787--8904054 Score: 320
Period size: 145 Copynumber: 1.8 Consensus size: 145
8903777 CGATTTTAAA
* * * * *
8903787 GGTTTATGTTCAATAATTCCATATGTGATTATCGAATAATATATCTGTGTTTGCAGTTGGACCAT
1 GGTTTATGTTAAAAAATTCCATATGTGATTATCCAATAACATATCTGTGTTTGCAATTGGACCAT
* * * * *
8903852 GCGACGATAACTCCACAACCACCGATAGATCCTCCTCAAACTCACAGTACTAGTGAGGAACCGGT
66 GCGACGATAACTCCACAACCACCAATAGATCCTCCTCAAACGCAAAGTACTAATGAGCAACCGGT
8903917 AAGGATGGTTATAAC
131 AAGGATGGTTATAAC
* * * *
8903932 GGTTTGTGTTAAAAAATTTCATATGTGATTATCCAATAACATATTTGTGTTTGCAATTGGACGAT
1 GGTTTATGTTAAAAAATTCCATATGTGATTATCCAATAACATATCTGTGTTTGCAATTGGACCAT
* * * * * * * * **
8903997 GCGATGATAGCTCCTCGACCACCAATCGGTCCTGCTCAACCGCAAAGTGGTAATGAGC
66 GCGACGATAACTCCACAACCACCAATAGATCCTCCTCAAACGCAAAGTACTAATGAGC
8904055 CGCTGGTAAG
Statistics
Matches: 99, Mismatches: 24, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
145 99 1.00
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (145 bp):
GGTTTATGTTAAAAAATTCCATATGTGATTATCCAATAACATATCTGTGTTTGCAATTGGACCAT
GCGACGATAACTCCACAACCACCAATAGATCCTCCTCAAACGCAAAGTACTAATGAGCAACCGGT
AAGGATGGTTATAAC
Found at i:8904510 original size:21 final size:21
Alignment explanation
Indices: 8904473--8904516 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
8904463 CATCTGGCGG
*
8904473 TGCTGGTGAGGGCCACGATGA
1 TGCTGATGAGGGCCACGATGA
8904494 TGCTGATGATGGG-CACGATGA
1 TGCTGATGA-GGGCCACGATGA
8904515 TG
1 TG
8904517 AACCTGGTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 18 0.86
22 3 0.14
ACGTcount: A:0.20, C:0.16, G:0.41, T:0.23
Consensus pattern (21 bp):
TGCTGATGAGGGCCACGATGA
Found at i:8905038 original size:118 final size:117
Alignment explanation
Indices: 8904887--8905333 Score: 519
Period size: 118 Copynumber: 3.8 Consensus size: 117
8904877 CAACGGTTGA
*
8904887 AGCGTGTCACCACAAGATGGGGCGTGTCGTGTCACCGTAAAATACAGCAAGAAGTCAACGTGTCA
1 AGCGTGTCACCACAAGATGGGGCGTG-CGTGTCACC-CAAAATACAGCAAGAAGTCAACGTGTCA
* *
8904952 CCACAAG-AATCTGCATGCACTCAGCGTGTAACGCTAAGTATCTGATTCCATTC
64 CCACAAGAAATCTGCATGCACTCAGCGTGTCACGCTAAGTATCTGGTTCCATTC
* * * * *
8905005 AGCGTGTCACCATAAGATGGGGCGTGACGTGTCACCCAGAATATAGAAAGAAGTCAGCGTGTCAC
1 AGCGTGTCACCACAAGATGGGGCGTG-CGTGTCACCCAAAATACAGCAAGAAGTCAACGTGTCAC
** * * *
8905070 CAC-AGAAATCTGCATGCACTCAATGTGTCACGCCAAGTATCTGGTTCAACTC
65 CACAAGAAATCTGCATGCACTCAGCGTGTCACGCTAAGTATCTGGTTCCATTC
* * *
8905122 AGTGTGTCACCACAAGATGGGGCGTGCTGTGTCACCCCACAATACTA-TAAGAAGTCAACGTGTC
1 AGCGTGTCACCACAAGATGGGGCGTGC-GTGTCA-CCCAAAATAC-AGCAAGAAGTCAACGTGTC
* * **
8905186 ACCA-TAGAAATCTGCATGCCCTCAGCGTGTCACG-TCAACAATCTGGTTCCATTC
63 ACCACAAGAAATCTGCATGCACTCAGCGTGTCACGCT-AAGTATCTGGTTCCATTC
* * * * * **
8905240 AGCGTGTCATCATAAGATTGGGCGTGCCGTGTCACCCAACAATACTGCAAGAAGTTAGTGTGTCA
1 AGCGTGTCACCACAAGATGGGGCGTG-CGTGTCACCCAA-AATACAGCAAGAAGTCAACGTGTCA
*
8905305 CCACAA-AAATCTGCATGCACTCAGAGTGT
64 CCACAAGAAATCTGCATGCACTCAGCGTGT
8905334 TAGCTTAGCA
Statistics
Matches: 278, Mismatches: 41, Indels: 20
0.82 0.12 0.06
Matches are distributed among these distances:
116 3 0.01
117 100 0.36
118 172 0.62
119 3 0.01
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.23
Consensus pattern (117 bp):
AGCGTGTCACCACAAGATGGGGCGTGCGTGTCACCCAAAATACAGCAAGAAGTCAACGTGTCACC
ACAAGAAATCTGCATGCACTCAGCGTGTCACGCTAAGTATCTGGTTCCATTC
Found at i:8908965 original size:31 final size:31
Alignment explanation
Indices: 8908916--8909119 Score: 275
Period size: 31 Copynumber: 6.6 Consensus size: 31
8908906 AGTCATGTTA
* ** *
8908916 TAACACACCATGC-TATAACACAGAATGTGG
1 TAACACGCCATGCATATAACGTAAAATGTGG
* *
8908946 TAACACGCTATGCATATAACGTAGAATGTGG
1 TAACACGCCATGCATATAACGTAAAATGTGG
* *
8908977 TAACATGCTATGCATATAACGTAAAATGTGG
1 TAACACGCCATGCATATAACGTAAAATGTGG
* * *
8909008 TAACACGCCATGCATGTAATGTAAAATGTGA
1 TAACACGCCATGCATATAACGTAAAATGTGG
* * *
8909039 TAATACGCCATGCATGTAATGTAAAATGTGG
1 TAACACGCCATGCATATAACGTAAAATGTGG
8909070 TAACACGCCATGCATATAACGTAAAATGTGG
1 TAACACGCCATGCATATAACGTAAAATGTGG
8909101 TAACACGCCATGCATATAA
1 TAACACGCCATGCATATAA
8909120 TGCCAACGCT
Statistics
Matches: 157, Mismatches: 16, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
30 11 0.07
31 146 0.93
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.25
Consensus pattern (31 bp):
TAACACGCCATGCATATAACGTAAAATGTGG
Found at i:8909557 original size:54 final size:54
Alignment explanation
Indices: 8909470--8909575 Score: 158
Period size: 54 Copynumber: 2.0 Consensus size: 54
8909460 ACCACAGCCC
*
8909470 GATGACGATGGTGCTCAACAGAGAGTTGACAGAGCTCATACAGTTCAGAGAGCT
1 GATGACGATGGTGCTCAACAGAGAGTTGACAGAGCTCAGACAGTTCAGAGAGCT
* * * * *
8909524 GATGACGATGGTGCTCAATAGAGAGTTGGCAGAGTTGAGACAGTTTAGAGAG
1 GATGACGATGGTGCTCAACAGAGAGTTGACAGAGCTCAGACAGTTCAGAGAG
8909576 TTGAGAGAGA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 46 1.00
ACGTcount: A:0.31, C:0.14, G:0.33, T:0.22
Consensus pattern (54 bp):
GATGACGATGGTGCTCAACAGAGAGTTGACAGAGCTCAGACAGTTCAGAGAGCT
Found at i:8909582 original size:9 final size:9
Alignment explanation
Indices: 8909543--8909584 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
8909533 GGTGCTCAAT
8909543 AGAGAGTTG
1 AGAGAGTTG
8909552 -GCAGAGTTG
1 AG-AGAGTTG
* *
8909561 AGACAGTTT
1 AGAGAGTTG
8909570 AGAGAGTTG
1 AGAGAGTTG
8909579 AGAGAG
1 AGAGAG
8909585 AAAGATGACT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
8 1 0.04
9 25 0.93
10 1 0.04
ACGTcount: A:0.33, C:0.05, G:0.40, T:0.21
Consensus pattern (9 bp):
AGAGAGTTG
Found at i:8926441 original size:31 final size:31
Alignment explanation
Indices: 8926383--8926481 Score: 164
Period size: 31 Copynumber: 3.2 Consensus size: 31
8926373 AGTCATGTTA
* *
8926383 TAACACACCATGC-TATAACGCAGAATGTGG
1 TAACACACCATGCATATAACGTAAAATGTGG
8926413 TAACACACCATGCATATAACGTAAAATGTGG
1 TAACACACCATGCATATAACGTAAAATGTGG
*
8926444 TAACACGCCATGCATATAACGTAAAATGTGG
1 TAACACACCATGCATATAACGTAAAATGTGG
8926475 TAACACA
1 TAACACA
8926482 AATGTGGTAA
Statistics
Matches: 64, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
30 13 0.20
31 51 0.80
ACGTcount: A:0.40, C:0.21, G:0.17, T:0.21
Consensus pattern (31 bp):
TAACACACCATGCATATAACGTAAAATGTGG
Found at i:8926486 original size:14 final size:14
Alignment explanation
Indices: 8926467--8926494 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8926457 ATATAACGTA
8926467 AAATGTGGTAACAC
1 AAATGTGGTAACAC
8926481 AAATGTGGTAACAC
1 AAATGTGGTAACAC
8926495 GCCATGCATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.21, T:0.21
Consensus pattern (14 bp):
AAATGTGGTAACAC
Found at i:8926489 original size:76 final size:76
Alignment explanation
Indices: 8926406--8926556 Score: 257
Period size: 76 Copynumber: 2.0 Consensus size: 76
8926396 TATAACGCAG
* *
8926406 AATGTGGTAACACACCATGCATATAACGTAAAATGTGGTAACACGCCATGCATATAACGTAAAAT
1 AATGTGGTAACACACCATGCATATAACGTAAAATGTGGTAACACACCATGCATATAACGTAAAAA
8926471 GTGGTAACACA
66 GTGGTAACACA
* * *
8926482 AATGTGGTAACACGCCATGCATGTAATGTAAAATGTGGTAACACACCATGCATATAACGTAAAAA
1 AATGTGGTAACACACCATGCATATAACGTAAAATGTGGTAACACACCATGCATATAACGTAAAAA
8926547 GTGGTAACAC
66 GTGGTAACAC
8926557 GCCATGCATA
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
76 70 1.00
ACGTcount: A:0.40, C:0.18, G:0.19, T:0.23
Consensus pattern (76 bp):
AATGTGGTAACACACCATGCATATAACGTAAAATGTGGTAACACACCATGCATATAACGTAAAAA
GTGGTAACACA
Found at i:8926500 original size:45 final size:45
Alignment explanation
Indices: 8926436--8926526 Score: 164
Period size: 45 Copynumber: 2.0 Consensus size: 45
8926426 ATATAACGTA
8926436 AAATGTGGTAACACGCCATGCATATAACGTAAAATGTGGTAACAC
1 AAATGTGGTAACACGCCATGCATATAACGTAAAATGTGGTAACAC
* *
8926481 AAATGTGGTAACACGCCATGCATGTAATGTAAAATGTGGTAACAC
1 AAATGTGGTAACACGCCATGCATATAACGTAAAATGTGGTAACAC
8926526 A
1 A
8926527 CCATGCATAT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.40, C:0.16, G:0.21, T:0.23
Consensus pattern (45 bp):
AAATGTGGTAACACGCCATGCATATAACGTAAAATGTGGTAACAC
Found at i:8926516 original size:31 final size:31
Alignment explanation
Indices: 8926481--8926571 Score: 146
Period size: 31 Copynumber: 2.9 Consensus size: 31
8926471 GTGGTAACAC
* *
8926481 AAATGTGGTAACACGCCATGCATGTAATGTA
1 AAATGTGGTAACACGCCATGCATATAACGTA
*
8926512 AAATGTGGTAACACACCATGCATATAACGTA
1 AAATGTGGTAACACGCCATGCATATAACGTA
*
8926543 AAAAGTGGTAACACGCCATGCATATAACG
1 AAATGTGGTAACACGCCATGCATATAACG
8926572 CCAACGCTGA
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 55 1.00
ACGTcount: A:0.40, C:0.19, G:0.20, T:0.22
Consensus pattern (31 bp):
AAATGTGGTAACACGCCATGCATATAACGTA
Found at i:8926664 original size:64 final size:63
Alignment explanation
Indices: 8926596--8926716 Score: 145
Period size: 64 Copynumber: 1.9 Consensus size: 63
8926586 CCAATGACTA
** * *
8926596 TAATTACTGTGTCTTTACACGAACTGGCATAAAAT-ACCTATGGCATGTGACACGCTAATCAGTG
1 TAATTACTGACTCGTTACACGAACTGGCATAAAATAACCAATGGC--GTGACACGCTAATCAGTG
* * * *
8926660 TAATTATTGACTCGTTACACGAACTGTCCTAAAATAACCAATGTCGTGACACGCTAA
1 TAATTACTGACTCGTTACACGAACTGGCATAAAATAACCAATGGCGTGACACGCTAA
8926717 AATAACCTAA
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
63 12 0.25
64 29 0.60
65 7 0.15
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (63 bp):
TAATTACTGACTCGTTACACGAACTGGCATAAAATAACCAATGGCGTGACACGCTAATCAGTG
Found at i:8927006 original size:54 final size:54
Alignment explanation
Indices: 8926919--8927023 Score: 165
Period size: 54 Copynumber: 1.9 Consensus size: 54
8926909 ACCACAGCCC
*
8926919 GATGACGATGGTGCTCAACAGAGAGTTGACAGAGCTCATACAGTTCAGAGAGCT
1 GATGACGATGGTGCTCAACAGAGAGTTGACAGAGCTCAGACAGTTCAGAGAGCT
* * * *
8926973 GATGACGATGGTGCTCAATAGAGAGTTGGCAGAGTTGAGACAGTTCAGAGA
1 GATGACGATGGTGCTCAACAGAGAGTTGACAGAGCTCAGACAGTTCAGAGA
8927024 ATTGAGAGAA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 46 1.00
ACGTcount: A:0.31, C:0.15, G:0.32, T:0.21
Consensus pattern (54 bp):
GATGACGATGGTGCTCAACAGAGAGTTGACAGAGCTCAGACAGTTCAGAGAGCT
Found at i:8943128 original size:110 final size:110
Alignment explanation
Indices: 8942933--8943148 Score: 333
Period size: 110 Copynumber: 2.0 Consensus size: 110
8942923 TAAAATGACT
* *
8942933 AAATATGCTGATTTAGTTACAACTTTCACAGTTTACAAATACACATTCTTTTGAAATTATTCAAC
1 AAATATGCTGATTTAGTTACAACTTTCACAATTTACAAATACACATTCTTTTGAAATTATGCAAC
* * * *
8942998 TCTTACTCAATTTACCTTTTATTTAAATTTACTCAGAATTTAGCA
66 TCTTACCCAATTTACATTTTATTTAAACTTACTCAAAATTTAGCA
* * * *
8943043 AAATATGTTGATTTAGTTACAACTTTTACAATTTATAAATACACATTCTTTTGAAATTATGCACC
1 AAATATGCTGATTTAGTTACAACTTTCACAATTTACAAATACACATTCTTTTGAAATTATGCAAC
*
8943108 TCTTACCCAATTTACATTTTATTTAAACTTATTCAAAATTT
66 TCTTACCCAATTTACATTTTATTTAAACTTACTCAAAATTT
8943149 CTTATAAAAT
Statistics
Matches: 95, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
110 95 1.00
ACGTcount: A:0.35, C:0.16, G:0.06, T:0.43
Consensus pattern (110 bp):
AAATATGCTGATTTAGTTACAACTTTCACAATTTACAAATACACATTCTTTTGAAATTATGCAAC
TCTTACCCAATTTACATTTTATTTAAACTTACTCAAAATTTAGCA
Found at i:8945172 original size:25 final size:27
Alignment explanation
Indices: 8945144--8945197 Score: 67
Period size: 25 Copynumber: 2.1 Consensus size: 27
8945134 TTCATAATTC
**
8945144 TAATAGTATTGAATTTT-A-TATAGAT
1 TAATAGTATAAAATTTTAATTATAGAT
*
8945169 TAATATTATAAAATTTTAATTATAGAT
1 TAATAGTATAAAATTTTAATTATAGAT
8945196 TA
1 TA
8945198 TTTAAACATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 14 0.58
26 1 0.04
27 9 0.38
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.48
Consensus pattern (27 bp):
TAATAGTATAAAATTTTAATTATAGAT
Found at i:8953002 original size:25 final size:27
Alignment explanation
Indices: 8952974--8953027 Score: 67
Period size: 25 Copynumber: 2.1 Consensus size: 27
8952964 TTCATAATTC
**
8952974 TAATAGTATTGAATTTT-A-TATAGAT
1 TAATAGTATAAAATTTTAATTATAGAT
*
8952999 TAATATTATAAAATTTTAATTATAGAT
1 TAATAGTATAAAATTTTAATTATAGAT
8953026 TA
1 TA
8953028 TTTAAACATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 14 0.58
26 1 0.04
27 9 0.38
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.48
Consensus pattern (27 bp):
TAATAGTATAAAATTTTAATTATAGAT
Found at i:8954283 original size:30 final size:30
Alignment explanation
Indices: 8954243--8954300 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
8954233 CATTAATCAT
*
8954243 AAGAGTTTATTTGATTCAAAATAAAAATTC
1 AAGAGCTTATTTGATTCAAAATAAAAATTC
*
8954273 AAGAGCTTATTTGATTTAAAATAAAAAT
1 AAGAGCTTATTTGATTCAAAATAAAAAT
8954301 AAAAATACTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.48, C:0.05, G:0.10, T:0.36
Consensus pattern (30 bp):
AAGAGCTTATTTGATTCAAAATAAAAATTC
Found at i:8954870 original size:2 final size:2
Alignment explanation
Indices: 8954859--8954892 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
8954849 GTTTGTCCCC
8954859 CT CT -T CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
8954893 AAAATGGAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:8960559 original size:21 final size:20
Alignment explanation
Indices: 8960535--8960590 Score: 53
Period size: 21 Copynumber: 2.8 Consensus size: 20
8960525 CAATTGAACG
8960535 ATTAATATAAAATTTTTCCTA
1 ATTAATATAAAATTTTT-CTA
* *
8960556 ATTAACT-TAAAATATTTGTA
1 ATTAA-TATAAAATTTTTCTA
*
8960576 ATTAA-ATATAATTTT
1 ATTAATATAAAATTTT
8960591 ATTATTTAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
19 7 0.24
20 7 0.24
21 14 0.48
22 1 0.03
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.48
Consensus pattern (20 bp):
ATTAATATAAAATTTTTCTA
Found at i:8972431 original size:21 final size:21
Alignment explanation
Indices: 8972400--8972541 Score: 149
Period size: 21 Copynumber: 6.8 Consensus size: 21
8972390 CGACTCCGAT
* * *
8972400 CATATGGGGATCTATCACGAG
1 CATAAGGGGATCTCTCACGAC
**
8972421 TGTAAGGGGATCTCTCACGAC
1 CATAAGGGGATCTCTCACGAC
8972442 CATAAGGGGATCTCTCACGAC
1 CATAAGGGGATCTCTCACGAC
*
8972463 CATATGGGGATCTCTCACGAC
1 CATAAGGGGATCTCTCACGAC
* * * *
8972484 CATACGGGGATCTATCCCGAG
1 CATAAGGGGATCTCTCACGAC
* * **
8972505 CATATGGGGATTTCTCACGTG
1 CATAAGGGGATCTCTCACGAC
*
8972526 CATATGGGGATCTCTC
1 CATAAGGGGATCTCTC
8972542 CCGTCGAATT
Statistics
Matches: 103, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 103 1.00
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.25
Consensus pattern (21 bp):
CATAAGGGGATCTCTCACGAC
Found at i:8972514 original size:63 final size:63
Alignment explanation
Indices: 8972400--8972541 Score: 176
Period size: 63 Copynumber: 2.3 Consensus size: 63
8972390 CGACTCCGAT
* *** *
8972400 CATATGGGGATCTATCACGAGTGTAAGGGGATCTCTCACGACCATAAGGGGATCTCTCACGAC
1 CATATGGGGATCTCTCACGACCATAAGGGGATCTATCACGACCATAAGGGGATCTCTCACGAC
* * * * * **
8972463 CATATGGGGATCTCTCACGACCATACGGGGATCTATCCCGAGCATATGGGGATTTCTCACGTG
1 CATATGGGGATCTCTCACGACCATAAGGGGATCTATCACGACCATAAGGGGATCTCTCACGAC
8972526 CATATGGGGATCTCTC
1 CATATGGGGATCTCTC
8972542 CCGTCGAATT
Statistics
Matches: 67, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
63 67 1.00
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.25
Consensus pattern (63 bp):
CATATGGGGATCTCTCACGACCATAAGGGGATCTATCACGACCATAAGGGGATCTCTCACGAC
Found at i:8972544 original size:42 final size:42
Alignment explanation
Indices: 8972400--8972538 Score: 179
Period size: 42 Copynumber: 3.3 Consensus size: 42
8972390 CGACTCCGAT
** *
8972400 CATATGGGGATCTATCACGAGTGTAAGGGGATCTCTCACGAC
1 CATATGGGGATCTATCACGAGCATATGGGGATCTCTCACGAC
* * *
8972442 CATAAGGGGATCTCTCACGACCATATGGGGATCTCTCACGAC
1 CATATGGGGATCTATCACGAGCATATGGGGATCTCTCACGAC
* * * **
8972484 CATACGGGGATCTATCCCGAGCATATGGGGATTTCTCACGTG
1 CATATGGGGATCTATCACGAGCATATGGGGATCTCTCACGAC
8972526 CATATGGGGATCT
1 CATATGGGGATCT
8972539 CTCCCGTCGA
Statistics
Matches: 83, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 83 1.00
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (42 bp):
CATATGGGGATCTATCACGAGCATATGGGGATCTCTCACGAC
Found at i:8973418 original size:39 final size:38
Alignment explanation
Indices: 8973358--8973447 Score: 110
Period size: 39 Copynumber: 2.3 Consensus size: 38
8973348 CTCCATTCAT
* **
8973358 CACCTCCCCTTTTTTCCCAGAAACAATTTC-CCCTTTCTC
1 CACCTCCCC-TTTTCCCCAGAAACAACCTCTCCC-TTCTC
8973397 CACCTCCCCTTTTCCCTCAGAAACAACCTCTCCCTTCTC
1 CACCTCCCCTTTTCCC-CAGAAACAACCTCTCCCTTCTC
*
8973436 CACTTCCCCTTT
1 CACCTCCCCTTT
8973448 CCTCAATTTC
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
38 6 0.13
39 36 0.80
40 3 0.07
ACGTcount: A:0.17, C:0.48, G:0.02, T:0.33
Consensus pattern (38 bp):
CACCTCCCCTTTTCCCCAGAAACAACCTCTCCCTTCTC
Found at i:8973776 original size:24 final size:24
Alignment explanation
Indices: 8973744--8973804 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
8973734 TTCTTTCGTG
8973744 GTTGCTGCTGCTGCGGTTGCTGTT
1 GTTGCTGCTGCTGCGGTTGCTGTT
* * *
8973768 GTTGTTGCTGTTGCGGTTGCTGCT
1 GTTGCTGCTGCTGCGGTTGCTGTT
* *
8973792 GCTCCTGCTGCTG
1 GTTGCTGCTGCTG
8973805 TGCGTTGTCT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.00, C:0.23, G:0.36, T:0.41
Consensus pattern (24 bp):
GTTGCTGCTGCTGCGGTTGCTGTT
Found at i:8973786 original size:12 final size:12
Alignment explanation
Indices: 8973749--8973789 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
8973739 TCGTGGTTGC
*
8973749 TGCTGCTGCGGT
1 TGCTGTTGCGGT
**
8973761 TGCTGTTGTTGT
1 TGCTGTTGCGGT
8973773 TGCTGTTGCGGT
1 TGCTGTTGCGGT
8973785 TGCTG
1 TGCTG
8973790 CTGCTCCTGC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.00, C:0.17, G:0.39, T:0.44
Consensus pattern (12 bp):
TGCTGTTGCGGT
Found at i:8976235 original size:14 final size:15
Alignment explanation
Indices: 8976210--8976260 Score: 61
Period size: 14 Copynumber: 3.5 Consensus size: 15
8976200 ATTGAAGCTT
8976210 TATTTATATTTAATA
1 TATTTATATTTAATA
*
8976225 TATTT-TATTTACT-
1 TATTTATATTTAATA
*
8976238 TATTTATATTTGATA
1 TATTTATATTTAATA
8976253 TAATTTAT
1 T-ATTTAT
8976261 TTATTTTTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
13 5 0.17
14 13 0.43
15 6 0.20
16 6 0.20
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (15 bp):
TATTTATATTTAATA
Found at i:8976241 original size:28 final size:28
Alignment explanation
Indices: 8976209--8976263 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
8976199 GATTGAAGCT
*
8976209 TTATTTATATTTAATATATTTTATTTAC
1 TTATTTATATTTAATATAATTTATTTAC
*
8976237 TTATTTATATTTGATATAATTTATTTA
1 TTATTTATATTTAATATAATTTATTTA
8976264 TTTTTAACTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.64
Consensus pattern (28 bp):
TTATTTATATTTAATATAATTTATTTAC
Found at i:8977112 original size:12 final size:11
Alignment explanation
Indices: 8977085--8977137 Score: 51
Period size: 12 Copynumber: 4.9 Consensus size: 11
8977075 AAAGTTTTTT
8977085 TTATTT-TTT-
1 TTATTTATTTA
8977094 TTAATTTATATTA
1 TT-ATTTAT-TTA
8977107 TTATTT-TTTA
1 TTATTTATTTA
8977117 -TATTTATTTA
1 TTATTTATTTA
8977127 CTTATTTATTT
1 -TTATTTATTT
8977138 CTATTCTATT
Statistics
Matches: 37, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
9 7 0.19
10 11 0.30
11 2 0.05
12 15 0.41
13 2 0.05
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.74
Consensus pattern (11 bp):
TTATTTATTTA
Found at i:8977113 original size:21 final size:22
Alignment explanation
Indices: 8977089--8977151 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 22
8977079 TTTTTTTTAT
8977089 TTTTTTTA-ATTTATATTA-TTA
1 TTTTTTTATATTTAT-TTACTTA
8977110 -TTTTTTATATTTATTTACTTA
1 TTTTTTTATATTTATTTACTTA
* *
8977131 TTTATTTCTATTCTATTTACT
1 TTTTTTTATATT-TATTTACT
8977152 CATATATTCT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
20 10 0.28
21 9 0.25
22 9 0.25
23 8 0.22
ACGTcount: A:0.24, C:0.06, G:0.00, T:0.70
Consensus pattern (22 bp):
TTTTTTTATATTTATTTACTTA
Found at i:8977131 original size:29 final size:28
Alignment explanation
Indices: 8977081--8977136 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 28
8977071 TTTTAAAGTT
* *
8977081 TTTTTTATTTTTTTTAATTTATATTATTA
1 TTTTTTATTTTATTTAACTTAT-TTATTA
8977110 TTTTTTATATTTATTT-ACTTATTTATT
1 TTTTTTAT-TTTATTTAACTTATTTATT
8977137 TCTATTCTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 5 0.21
29 13 0.54
30 6 0.25
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (28 bp):
TTTTTTATTTTATTTAACTTATTTATTA
Found at i:8977151 original size:23 final size:21
Alignment explanation
Indices: 8977090--8977151 Score: 74
Period size: 21 Copynumber: 2.9 Consensus size: 21
8977080 TTTTTTTATT
8977090 TTTTTTA-ATTTATATTA-TTA
1 TTTTTTATATTTAT-TTACTTA
8977110 TTTTTTATATTTATTTACTTA
1 TTTTTTATATTTATTTACTTA
*
8977131 TTTATTTCTATTCTATTTACT
1 TTT-TTTATATT-TATTTACT
8977152 CATATATTCT
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
20 10 0.27
21 12 0.32
22 7 0.19
23 8 0.22
ACGTcount: A:0.24, C:0.06, G:0.00, T:0.69
Consensus pattern (21 bp):
TTTTTTATATTTATTTACTTA
Found at i:8977159 original size:23 final size:22
Alignment explanation
Indices: 8977117--8977159 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
8977107 TTATTTTTTA
* *
8977117 TATTTATTTACTTATTTATTTC
1 TATTTATTTACTCATATATTTC
8977139 TATTCTATTTACTCATATATT
1 TATT-TATTTACTCATATATT
8977160 CTAAATCTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.26, C:0.12, G:0.00, T:0.63
Consensus pattern (22 bp):
TATTTATTTACTCATATATTTC
Found at i:8984030 original size:28 final size:28
Alignment explanation
Indices: 8983999--8984140 Score: 176
Period size: 29 Copynumber: 4.9 Consensus size: 28
8983989 AAATATTTTA
*
8983999 TCTTGTCTAAATTAAGACAAATATGTTT
1 TCTTGTCTAAATTAAGACAAACATGTTT
* * *
8984027 TCTTGACTAAATTAAGACAAAAAATATTTT
1 TCTTGTCTAAATTAAGAC-AAACAT-GTTT
* * *
8984057 TCTTATCTTAAATTAAGGCAAACATATTT
1 TCTTGTC-TAAATTAAGACAAACATGTTT
8984086 TCTTGTCTAAATTAAGACCAAACATGTTT
1 TCTTGTCTAAATTAAGA-CAAACATGTTT
*
8984115 TCTTATCTAAATTAAGACAAACATGT
1 TCTTGTCTAAATTAAGACAAACATGT
8984141 CAAAGTTGTC
Statistics
Matches: 98, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
28 35 0.36
29 40 0.41
30 13 0.13
31 10 0.10
ACGTcount: A:0.39, C:0.13, G:0.08, T:0.39
Consensus pattern (28 bp):
TCTTGTCTAAATTAAGACAAACATGTTT
Found at i:8984069 original size:59 final size:58
Alignment explanation
Indices: 8983986--8984140 Score: 213
Period size: 59 Copynumber: 2.7 Consensus size: 58
8983976 TTAAGACAAA
* *
8983986 AAAAAATATTTTATCTTGTCTAAATTAAGACAAATATGTTTTCTTGACTAAATTAAGAC
1 AAAAAATATTTT-TCTTATCTAAATTAAGACAAACATGTTTTCTTGACTAAATTAAGAC
* * *
8984045 AAAAAATATTTTTCTTATCTTAAATTAAGGCAAACATATTTTCTTGTCTAAATTAAGAC
1 AAAAAATATTTTTCTTATC-TAAATTAAGACAAACATGTTTTCTTGACTAAATTAAGAC
* * *
8984104 CAAACAT-GTTTTCTTATCTAAATTAAGACAAACATGT
1 AAAAAATATTTTTCTTATCTAAATTAAGACAAACATGT
8984141 CAAAGTTGTC
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
57 17 0.20
58 16 0.19
59 52 0.61
ACGTcount: A:0.41, C:0.12, G:0.08, T:0.39
Consensus pattern (58 bp):
AAAAAATATTTTTCTTATCTAAATTAAGACAAACATGTTTTCTTGACTAAATTAAGAC
Found at i:8988419 original size:38 final size:38
Alignment explanation
Indices: 8988377--8988453 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
8988367 TGACAAAGAG
8988377 TAGACGTTTAAGTGCAAAAAAGTGCAGTGAAGCTTTTT
1 TAGACGTTTAAGTGCAAAAAAGTGCAGTGAAGCTTTTT
8988415 TAGACGTTTAAGTGCAAAAAAGTGCAGTGAAGCTTTTT
1 TAGACGTTTAAGTGCAAAAAAGTGCAGTGAAGCTTTTT
8988453 T
1 T
8988454 GGTTTTTCTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.34, C:0.10, G:0.23, T:0.32
Consensus pattern (38 bp):
TAGACGTTTAAGTGCAAAAAAGTGCAGTGAAGCTTTTT
Found at i:9006883 original size:14 final size:13
Alignment explanation
Indices: 9006854--9006887 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
9006844 CTCTAAAATC
*
9006854 AATAATAATAATA
1 AATAATAATAACA
9006867 AATAATCAATAACA
1 AATAAT-AATAACA
9006881 AATAATA
1 AATAATA
9006888 TTAAGTATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (13 bp):
AATAATAATAACA
Found at i:9008004 original size:33 final size:33
Alignment explanation
Indices: 9007967--9008033 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
9007957 CATTTCTATT
9007967 ATTTATTAATTATTTTATACATATTTCAAAAAA
1 ATTTATTAATTATTTTATACATATTTCAAAAAA
9008000 ATTTATTAATTATTTTATACATATTTCAAAAAA
1 ATTTATTAATTATTTTATACATATTTCAAAAAA
9008033 A
1 A
9008034 CCAAGTACTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.48
Consensus pattern (33 bp):
ATTTATTAATTATTTTATACATATTTCAAAAAA
Found at i:9008119 original size:2 final size:2
Alignment explanation
Indices: 9008112--9008136 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
9008102 GTTATATGTT
9008112 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
9008137 GCATATTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:9009410 original size:20 final size:22
Alignment explanation
Indices: 9009377--9009429 Score: 74
Period size: 20 Copynumber: 2.5 Consensus size: 22
9009367 ATTAATTTGT
9009377 ATTTTTATTGTATTATTTGATT-
1 ATTTTTATT-TATTATTTGATTA
*
9009399 A-TTTTATTTATTTTTTGATTA
1 ATTTTTATTTATTATTTGATTA
9009420 ATTTTTATTT
1 ATTTTTATTT
9009430 GGGAAATAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 11 0.39
21 8 0.29
22 9 0.32
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.72
Consensus pattern (22 bp):
ATTTTTATTTATTATTTGATTA
Found at i:9013939 original size:2 final size:2
Alignment explanation
Indices: 9013932--9013982 Score: 77
Period size: 2 Copynumber: 25.5 Consensus size: 2
9013922 ATATAATTAT
*
9013932 TA TA TA TA TA TT TA TA TA TA GTA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA
9013974 TA TA TA TA T
1 TA TA TA TA T
9013983 TGCAAAGTGT
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
1 1 0.02
2 42 0.93
3 2 0.04
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (2 bp):
TA
Found at i:9013942 original size:17 final size:18
Alignment explanation
Indices: 9013922--9013981 Score: 70
Period size: 19 Copynumber: 3.3 Consensus size: 18
9013912 ATTACAAGGA
9013922 ATATAAT-TATTATATAT
1 ATATAATATATTATATAT
*
9013939 ATAT-TTATATATAGTATAT
1 ATATAATATAT-TA-TATAT
9013958 ATATATATATATTATATAT
1 ATATA-ATATATTATATAT
9013977 ATATA
1 ATATA
9013982 TTGCAAAGTG
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
16 1 0.03
17 7 0.19
18 2 0.06
19 19 0.53
20 2 0.06
21 5 0.14
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (18 bp):
ATATAATATATTATATAT
Found at i:9013958 original size:19 final size:19
Alignment explanation
Indices: 9013929--9013982 Score: 83
Period size: 19 Copynumber: 2.8 Consensus size: 19
9013919 GGAATATAAT
*
9013929 TATTATATATATATTTATA
1 TATTATATATATATATATA
9013948 TA-TAGTATATATATATATA
1 TATTA-TATATATATATATA
9013967 TATTATATATATATAT
1 TATTATATATATATAT
9013983 TGCAAAGTGT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
18 2 0.06
19 28 0.88
20 2 0.06
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (19 bp):
TATTATATATATATATATA
Found at i:9013982 original size:15 final size:15
Alignment explanation
Indices: 9013922--9013982 Score: 78
Period size: 13 Copynumber: 4.4 Consensus size: 15
9013912 ATTACAAGGA
9013922 ATATA-ATTAT-TAT
1 ATATATATTATATAT
9013935 ATATATATT-TATAT
1 ATATATATTATATAT
*
9013949 ATA-GTA-TATATAT
1 ATATATATTATATAT
9013962 ATATATATTATATAT
1 ATATATATTATATAT
9013977 ATATAT
1 ATATAT
9013983 TGCAAAGTGT
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
12 1 0.02
13 16 0.39
14 11 0.27
15 13 0.32
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (15 bp):
ATATATATTATATAT
Found at i:9013982 original size:17 final size:16
Alignment explanation
Indices: 9013932--9013982 Score: 77
Period size: 17 Copynumber: 3.2 Consensus size: 16
9013922 ATATAATTAT
*
9013932 TATATATATATTTATA
1 TATATATATATATATA
9013948 TATAGTATATATATATA
1 TATA-TATATATATATA
9013965 TATAT-TATATATATA
1 TATATATATATATATA
9013980 TAT
1 TAT
9013983 TGCAAAGTGT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
15 13 0.39
16 5 0.15
17 15 0.45
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (16 bp):
TATATATATATATATA
Found at i:9014422 original size:23 final size:23
Alignment explanation
Indices: 9014379--9014432 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 23
9014369 TTTAATAATA
* *
9014379 ATTACTATGTCTATATCATAGGT
1 ATTAATATGTCTATATAATAGGT
9014402 ATTAATATGT-TATATGAATAGGT
1 ATTAATATGTCTATAT-AATAGGT
9014425 -TATAATAT
1 AT-TAATAT
9014433 TAATATATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 6 0.22
23 21 0.78
ACGTcount: A:0.37, C:0.06, G:0.13, T:0.44
Consensus pattern (23 bp):
ATTAATATGTCTATATAATAGGT
Found at i:9024161 original size:2 final size:2
Alignment explanation
Indices: 9024154--9024204 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
9024144 GGTTTATAAA
9024154 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9024196 AT AT AT AT A
1 AT AT AT AT A
9024205 ATGAATTGCT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:9025686 original size:2 final size:2
Alignment explanation
Indices: 9025681--9025705 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
9025671 CCATCATCTT
9025681 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
9025706 TTTTCTTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:9030623 original size:25 final size:25
Alignment explanation
Indices: 9030595--9030647 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
9030585 ATAATTTTAA
*
9030595 TTTATAAATTAAATCAT-AAAATAAT
1 TTTAT-AATAAAATCATAAAAATAAT
* *
9030620 TTTATTATAAAATTATAAAAATAAT
1 TTTATAATAAAATCATAAAAATAAT
9030645 TTT
1 TTT
9030648 TTTAAAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 8 0.33
25 16 0.67
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (25 bp):
TTTATAATAAAATCATAAAAATAAT
Found at i:9030632 original size:24 final size:25
Alignment explanation
Indices: 9030605--9030665 Score: 70
Period size: 25 Copynumber: 2.5 Consensus size: 25
9030595 TTTATAAATT
*
9030605 AAATCAT-AAAATAATTTTATTATA
1 AAATCATAAAAATAATTTTATTAAA
* *
9030629 AAATTATAAAAATAATTTTTTTAAA
1 AAATCATAAAAATAATTTTATTAAA
**
9030654 AAAAAATAAAAA
1 AAATCATAAAAA
9030666 ACGGGTTGGC
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
24 6 0.19
25 25 0.81
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (25 bp):
AAATCATAAAAATAATTTTATTAAA
Found at i:9030656 original size:25 final size:25
Alignment explanation
Indices: 9030612--9030665 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
9030602 ATTAAATCAT
* **
9030612 AAAATAATTTTATTATAAAATTATA
1 AAAATAATTTTATTAAAAAAAAATA
*
9030637 AAAATAATTTTTTTAAAAAAAAATA
1 AAAATAATTTTATTAAAAAAAAATA
9030662 AAAA
1 AAAA
9030666 ACGGGTTGGC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (25 bp):
AAAATAATTTTATTAAAAAAAAATA
Found at i:9036092 original size:33 final size:32
Alignment explanation
Indices: 9036050--9036136 Score: 131
Period size: 31 Copynumber: 2.7 Consensus size: 32
9036040 TTCTCTAGTT
9036050 AAATCACTGGTCTTATTCTTATAAAAAAAAAAA
1 AAATCACTGGTCTTATTCTTAT-AAAAAAAAAA
9036083 AAATCACTGGTCTTATTCTTAT-AAAAAAAAA
1 AAATCACTGGTCTTATTCTTATAAAAAAAAAA
* * *
9036114 AAGTCCCTGGTCTTATTATTATA
1 AAATCACTGGTCTTATTCTTATA
9036137 TCTCTTCCCT
Statistics
Matches: 50, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
31 28 0.56
33 22 0.44
ACGTcount: A:0.44, C:0.14, G:0.08, T:0.34
Consensus pattern (32 bp):
AAATCACTGGTCTTATTCTTATAAAAAAAAAA
Found at i:9039623 original size:2 final size:2
Alignment explanation
Indices: 9039616--9039646 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
9039606 ATCATTTTTC
9039616 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
9039647 TTTCTTTCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:9046368 original size:19 final size:19
Alignment explanation
Indices: 9046344--9046383 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
9046334 ATAGACTCAA
*
9046344 ATGATCCCATATAAATTAT
1 ATGATCCCATATAAATCAT
*
9046363 ATGATCTCATATAAATCAT
1 ATGATCCCATATAAATCAT
9046382 AT
1 AT
9046384 CATCAACATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.15, G:0.05, T:0.38
Consensus pattern (19 bp):
ATGATCCCATATAAATCAT
Found at i:9047172 original size:50 final size:50
Alignment explanation
Indices: 9047125--9047220 Score: 138
Period size: 50 Copynumber: 1.9 Consensus size: 50
9047115 AGGTTGAATA
* * *
9047125 TAAATTTGTTGGTGTTAGATCTATAGTTGGAATCACTTCAACTTTGAAAT
1 TAAATTAGTTGGTGTTAGATCCATAGGTGGAATCACTTCAACTTTGAAAT
* * *
9047175 TGAATTAGTTGGTGTTGGATCCATAGGTGGAATCATTTCAACTTTG
1 TAAATTAGTTGGTGTTAGATCCATAGGTGGAATCACTTCAACTTTG
9047221 GGAATTTGAT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
50 40 1.00
ACGTcount: A:0.27, C:0.10, G:0.22, T:0.41
Consensus pattern (50 bp):
TAAATTAGTTGGTGTTAGATCCATAGGTGGAATCACTTCAACTTTGAAAT
Found at i:9050658 original size:28 final size:29
Alignment explanation
Indices: 9050610--9050675 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
9050600 ATGTCTATGG
* **
9050610 GTAATTTTTCAGTTT-TTGGGGTAATAA-T
1 GTAATTTTTCACTTTACGGGGGTAA-AAGT
9050638 GTAATTTTTCACTTTACGGGGGTAAAAGT
1 GTAATTTTTCACTTTACGGGGGTAAAAGT
9050667 GTAATTTTT
1 GTAATTTTT
9050676 AAAAATTTGC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
28 16 0.48
29 17 0.52
ACGTcount: A:0.26, C:0.06, G:0.21, T:0.47
Consensus pattern (29 bp):
GTAATTTTTCACTTTACGGGGGTAAAAGT
Found at i:9052321 original size:129 final size:129
Alignment explanation
Indices: 9052091--9052349 Score: 389
Period size: 129 Copynumber: 2.0 Consensus size: 129
9052081 TATATTAAAT
*
9052091 GGTCACTGTAGTGGTGGCAGTTTCCGTGGACTGCCTATGAGAGGAGCACGGTAACCTAATTATAT
1 GGTCACTGTAGTGGTGGCAGTTTCCGTGGACTGCCTATAAGAGGAGCACGGTAACCTAATTATAT
*
9052156 ATTTACCTCCGGAGGGAGACGTTGGATGAAGTATCTCCTGAGGTAAGATTTGAATGCACCTCAC
66 ACTTACCTCCGGAGGGAGACGTTGGATGAAGTATCTCCTGAGGTAAGATTTGAATGCACCTCAC
** *
9052220 GGTCACTGTAGTGGTGGGGGTTTTCC-TGGACTGCCTATAAGAGGGGCACGGTAA-CTCAATTAT
1 GGTCACTGTAGTGGTGGCAG-TTTCCGTGGACTGCCTATAAGAGGAGCACGGTAACCT-AATTAT
* * * *
9052283 ATACTTACCTCC-GAGGGGAGATGTTGGGTGAAGTATCTCCTGAGGTATGATTTGAGTGCACCTC
64 ATACTTACCTCCGGA-GGGAGACGTTGGATGAAGTATCTCCTGAGGTAAGATTTGAATGCACCTC
9052347 AC
128 AC
9052349 G
1 G
9052350 TTCGGGCCAC
Statistics
Matches: 118, Mismatches: 9, Indels: 6
0.89 0.07 0.05
Matches are distributed among these distances:
128 4 0.03
129 109 0.92
130 5 0.04
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (129 bp):
GGTCACTGTAGTGGTGGCAGTTTCCGTGGACTGCCTATAAGAGGAGCACGGTAACCTAATTATAT
ACTTACCTCCGGAGGGAGACGTTGGATGAAGTATCTCCTGAGGTAAGATTTGAATGCACCTCAC
Found at i:9055620 original size:3 final size:4
Alignment explanation
Indices: 9055605--9055661 Score: 72
Period size: 4 Copynumber: 15.8 Consensus size: 4
9055595 AGAGTTTGAA
9055605 TATT TATT TA-T TA-T TATT TA-T TATT TATT TATT TATT TA-T TATT
1 TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT
9055649 T-TT TATT T-TT TAT
1 TATT TATT TATT TAT
9055662 ATTTTCATTG
Statistics
Matches: 48, Mismatches: 0, Indels: 10
0.83 0.00 0.17
Matches are distributed among these distances:
3 18 0.38
4 30 0.62
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TATT
Found at i:9055638 original size:29 final size:29
Alignment explanation
Indices: 9055605--9055661 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
9055595 AGAGTTTGAA
9055605 TATTTATTTATTATTATTTATTATTTATT
1 TATTTATTTATTATTATTTATTATTTATT
* *
9055634 TATTTATTTATTATTTTTTATTTTTTAT
1 TATTTATTTATTATTATTTATTATTTAT
9055662 ATTTTCATTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (29 bp):
TATTTATTTATTATTATTTATTATTTATT
Found at i:9055666 original size:7 final size:7
Alignment explanation
Indices: 9055607--9055666 Score: 66
Period size: 7 Copynumber: 8.3 Consensus size: 7
9055597 AGTTTGAATA
9055607 TTTATTT
1 TTTATTT
* *
9055614 ATTATTA
1 TTTATTT
*
9055621 TTTATTA
1 TTTATTT
9055628 TTTATTT
1 TTTATTT
9055635 ATTTATTT
1 -TTTATTT
*
9055643 ATTATTT
1 TTTATTT
9055650 TTTATTT
1 TTTATTT
9055657 TTTATATT
1 TTTAT-TT
9055665 TT
1 TT
9055667 CATTGAATGG
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
7 34 0.76
8 11 0.24
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (7 bp):
TTTATTT
Found at i:9061984 original size:17 final size:16
Alignment explanation
Indices: 9061961--9062000 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
9061951 AATCGTTAGA
*
9061961 TATTAAAATCTATAAT
1 TATTAAAATATATAAT
*
9061977 TAATTAAATTATATAAT
1 T-ATTAAAATATATAAT
9061994 TATTAAA
1 TATTAAA
9062001 TAAGTTAACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (16 bp):
TATTAAAATATATAAT
Found at i:9062737 original size:9 final size:8
Alignment explanation
Indices: 9062697--9062794 Score: 71
Period size: 9 Copynumber: 12.0 Consensus size: 8
9062687 TTTTTATTTA
9062697 ATTTTATT
1 ATTTTATT
*
9062705 TTTTTATT
1 ATTTTATT
*
9062713 A--TTATCA
1 ATTTTAT-T
*
9062720 ATTTAATT
1 ATTTTATT
9062728 AATTTTATT
1 -ATTTTATT
9062737 ATTATTATT
1 ATT-TTATT
9062746 ATTATTATT
1 ATT-TTATT
9062755 ATTATTATT
1 ATT-TTATT
9062764 ATTATT-TT
1 ATT-TTATT
9062772 ACTTTTATT
1 A-TTTTATT
9062781 A-TTT-TT
1 ATTTTATT
9062787 ATTTTATT
1 ATTTTATT
9062795 TTCATTTTTA
Statistics
Matches: 75, Mismatches: 6, Indels: 18
0.76 0.06 0.18
Matches are distributed among these distances:
6 7 0.09
7 7 0.09
8 17 0.23
9 44 0.59
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (8 bp):
ATTTTATT
Found at i:9062740 original size:3 final size:3
Alignment explanation
Indices: 9062732--9062794 Score: 87
Period size: 3 Copynumber: 21.7 Consensus size: 3
9062722 TTAATTAATT
9062732 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT- TTA CTT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA
*
9062776 TTA TTA TTT TTA TT- TTA TT
1 TTA TTA TTA TTA TTA TTA TT
9062795 TTCATTTTTA
Statistics
Matches: 54, Mismatches: 2, Indels: 8
0.84 0.03 0.12
Matches are distributed among these distances:
2 6 0.11
3 46 0.85
4 2 0.04
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (3 bp):
TTA
Found at i:9062801 original size:6 final size:5
Alignment explanation
Indices: 9062688--9062823 Score: 80
Period size: 5 Copynumber: 25.6 Consensus size: 5
9062678 GACACCATTT
* * * * * *
9062688 TTTTA TTTAA TTTTA TTTTT TTATTA TTATCA ATTTA ATTAA TTTTA --TTA
1 TTTTA TTTTA TTTTA TTTTA TT-TTA TT-TTA TTTTA TTTTA TTTTA TTTTA
*
9062738 TTATTA TTATTA TTATTA TTATTA TTATTA TTTTA CTTTTA TTAT- TTTTA
1 TT-TTA TT-TTA TT-TTA TT-TTA TT-TTA TTTTA -TTTTA TTTTA TTTTA
*
9062788 TTTTA TTTTCA TTTTTA TCTTA TTTTA TTTGTA TTT
1 TTTTA TTTT-A -TTTTA TTTTA TTTTA TTT-TA TTT
9062824 GTTTATGGAT
Statistics
Matches: 108, Mismatches: 14, Indels: 17
0.78 0.10 0.12
Matches are distributed among these distances:
3 3 0.03
4 3 0.03
5 49 0.45
6 49 0.45
7 4 0.04
ACGTcount: A:0.26, C:0.03, G:0.01, T:0.71
Consensus pattern (5 bp):
TTTTA
Found at i:9063953 original size:38 final size:38
Alignment explanation
Indices: 9063901--9063973 Score: 119
Period size: 38 Copynumber: 1.9 Consensus size: 38
9063891 GTACAAGGGG
*
9063901 GAAGCTGTATATGAACAAGTACAATAGAAGAAGCTGAA
1 GAAGCTGTACATGAACAAGTACAATAGAAGAAGCTGAA
* *
9063939 GAAGTTGTACATGAACAGGTACAATAGAAGAAGCT
1 GAAGCTGTACATGAACAAGTACAATAGAAGAAGCT
9063974 ATACATGAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.45, C:0.11, G:0.25, T:0.19
Consensus pattern (38 bp):
GAAGCTGTACATGAACAAGTACAATAGAAGAAGCTGAA
Found at i:9064179 original size:18 final size:18
Alignment explanation
Indices: 9064156--9064193 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
9064146 TCACTATCAC
9064156 CTGTGTGAAATTA-TTATT
1 CTGTGTGAAA-TAGTTATT
9064174 CTGTGTGAAATAGTTATT
1 CTGTGTGAAATAGTTATT
9064192 CT
1 CT
9064194 ACTTATATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 2 0.11
18 17 0.89
ACGTcount: A:0.26, C:0.08, G:0.18, T:0.47
Consensus pattern (18 bp):
CTGTGTGAAATAGTTATT
Found at i:9065679 original size:21 final size:23
Alignment explanation
Indices: 9065646--9065688 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 23
9065636 AACTTTGGGG
9065646 AAAAGAGGAAAAA-AATAAGAAAA
1 AAAAGAGGAAAAAGAA-AAGAAAA
9065669 AAAAGA-G-AAAAGAAAAGAAA
1 AAAAGAGGAAAAAGAAAAGAAA
9065689 CACAAGTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 10 0.53
22 3 0.16
23 6 0.32
ACGTcount: A:0.79, C:0.00, G:0.19, T:0.02
Consensus pattern (23 bp):
AAAAGAGGAAAAAGAAAAGAAAA
Found at i:9066399 original size:28 final size:28
Alignment explanation
Indices: 9066366--9066422 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 28
9066356 TTAAAAATTA
**
9066366 TAAATTTAAACTTGTAAA-ATTAATATTT
1 TAAATTTAAA-TTAAAAATATTAATATTT
9066394 TAAATTTAAATTAAAAATATTAATATTT
1 TAAATTTAAATTAAAAATATTAATATTT
9066422 T
1 T
9066423 CATATTTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 5 0.19
28 21 0.81
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (28 bp):
TAAATTTAAATTAAAAATATTAATATTT
Found at i:9066481 original size:43 final size:39
Alignment explanation
Indices: 9066388--9066461 Score: 109
Period size: 37 Copynumber: 2.0 Consensus size: 39
9066378 TGTAAAATTA
* *
9066388 ATATTTTAAATT-TAAATTAAAAATATTAATATTTTCAT
1 ATATTTTAAATTATAAATTAAAAAAATTAATATTTTAAT
9066426 AT-TTTTAAATTATAAA-TAAAAAAATTAATATTTTAA
1 ATATTTTAAATTATAAATTAAAAAAATTAATATTTTAA
9066462 AAATATTAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
37 27 0.82
38 6 0.18
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.47
Consensus pattern (39 bp):
ATATTTTAAATTATAAATTAAAAAAATTAATATTTTAAT
Found at i:9066508 original size:19 final size:19
Alignment explanation
Indices: 9066458--9066509 Score: 50
Period size: 19 Copynumber: 2.7 Consensus size: 19
9066448 AATTAATATT
* *
9066458 TTAAAAATATTAATTTTAAA
1 TTAAAAA-ATGAAATTTAAA
** *
9066478 TTATTAAGTGAAATTTAAA
1 TTAAAAAATGAAATTTAAA
9066497 TTAAAAAATGAAA
1 TTAAAAAATGAAA
9066510 AATGCAAATA
Statistics
Matches: 24, Mismatches: 8, Indels: 1
0.73 0.24 0.03
Matches are distributed among these distances:
19 19 0.79
20 5 0.21
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (19 bp):
TTAAAAAATGAAATTTAAA
Found at i:9069801 original size:81 final size:81
Alignment explanation
Indices: 9069666--9069828 Score: 299
Period size: 81 Copynumber: 2.0 Consensus size: 81
9069656 AAGGAGTGAC
*
9069666 TCTCTTAATCCAAATAAACCTTGAAATAATAAATAAAATACTCAAATCTAAATTATAAAATACAT
1 TCTCTTAATCCAAATAAACCTTGAAATAATAAACAAAATACTCAAATCTAAATTATAAAATACAT
9069731 TATCATGAAATTCTTA
66 TATCATGAAATTCTTA
* *
9069747 TCTCTTAGTCCAAATAAACCTTGAAATAATAAACAAAATACTCAAATCTAAATTATAAAATATAT
1 TCTCTTAATCCAAATAAACCTTGAAATAATAAACAAAATACTCAAATCTAAATTATAAAATACAT
9069812 TATCATGAAATTCTTA
66 TATCATGAAATTCTTA
9069828 T
1 T
9069829 ACCATATCCA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
81 79 1.00
ACGTcount: A:0.48, C:0.15, G:0.03, T:0.34
Consensus pattern (81 bp):
TCTCTTAATCCAAATAAACCTTGAAATAATAAACAAAATACTCAAATCTAAATTATAAAATACAT
TATCATGAAATTCTTA
Found at i:9071787 original size:13 final size:13
Alignment explanation
Indices: 9071769--9071797 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
9071759 CTATTGATAC
9071769 ATCCTTTAGAAGT
1 ATCCTTTAGAAGT
9071782 ATCCTTTAGAAGT
1 ATCCTTTAGAAGT
9071795 ATC
1 ATC
9071798 GATAGATTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (13 bp):
ATCCTTTAGAAGT
Found at i:9073286 original size:20 final size:20
Alignment explanation
Indices: 9073258--9073295 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
9073248 AATTTGCATC
9073258 AAATATATCAATATATTTCA
1 AAATATATCAATATATTTCA
*
9073278 AAATTTATCAATATATTT
1 AAATATATCAATATATTT
9073296 GGTTTTGAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.47, C:0.08, G:0.00, T:0.45
Consensus pattern (20 bp):
AAATATATCAATATATTTCA
Found at i:9073575 original size:17 final size:17
Alignment explanation
Indices: 9073553--9073600 Score: 73
Period size: 17 Copynumber: 2.9 Consensus size: 17
9073543 ATTTGGATTC
9073553 AATAAAAATATCTAAAA-
1 AATAAAAA-ATCTAAAAG
9073570 AAT-AAAAATCTAAAAG
1 AATAAAAAATCTAAAAG
9073586 AATAAAAAATCTAAA
1 AATAAAAAATCTAAA
9073601 TTTTGGTTCC
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
15 8 0.28
16 7 0.24
17 14 0.48
ACGTcount: A:0.71, C:0.06, G:0.02, T:0.21
Consensus pattern (17 bp):
AATAAAAAATCTAAAAG
Found at i:9074119 original size:2 final size:2
Alignment explanation
Indices: 9074112--9074159 Score: 78
Period size: 2 Copynumber: 23.5 Consensus size: 2
9074102 TACTATATTG
9074112 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CTA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA
*
9074155 AA TA T
1 TA TA T
9074160 TAATTTTCTT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
2 41 0.95
3 2 0.05
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:9076216 original size:18 final size:18
Alignment explanation
Indices: 9076190--9076227 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
9076180 TCCATTAATT
*
9076190 TAAATTTTGCTTAATTAC
1 TAAACTTTGCTTAATTAC
9076208 TAAACTTTGCTTAATTAC
1 TAAACTTTGCTTAATTAC
9076226 TA
1 TA
9076228 GATTACTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.34, C:0.13, G:0.05, T:0.47
Consensus pattern (18 bp):
TAAACTTTGCTTAATTAC
Found at i:9076728 original size:22 final size:22
Alignment explanation
Indices: 9076698--9076740 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
9076688 AAGCATGCTT
9076698 AAAACCCTAAACCCTAAACGAA
1 AAAACCCTAAACCCTAAACGAA
* * *
9076720 AAAATCCTACACCGTAAACGA
1 AAAACCCTAAACCCTAAACGA
9076741 TAGAAATTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.51, C:0.30, G:0.07, T:0.12
Consensus pattern (22 bp):
AAAACCCTAAACCCTAAACGAA
Found at i:9081674 original size:40 final size:40
Alignment explanation
Indices: 9081625--9081763 Score: 179
Period size: 40 Copynumber: 3.5 Consensus size: 40
9081615 AAAGATCTTA
* * *
9081625 AACATAAACTTAAATAATTAAAAATAAATATCCATACAAC
1 AACATAAACTTAAATAACTAAACATAAATATCCAAACAAC
* * * *
9081665 GATATAAACTTAAATAACTATACATAAATATCCAAATAAC
1 AACATAAACTTAAATAACTAAACATAAATATCCAAACAAC
* * *
9081705 AACATAAACTTAAATAACTAAACACAAAGATCCAAACAAAT
1 AACATAAACTTAAATAACTAAACATAAATATCCAAAC-AAC
9081746 AACATAAACTTAAATAAC
1 AACATAAACTTAAATAAC
9081764 AAAAAAATAA
Statistics
Matches: 84, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
40 64 0.76
41 20 0.24
ACGTcount: A:0.59, C:0.17, G:0.01, T:0.23
Consensus pattern (40 bp):
AACATAAACTTAAATAACTAAACATAAATATCCAAACAAC
Found at i:9081702 original size:22 final size:21
Alignment explanation
Indices: 9081676--9081753 Score: 65
Period size: 20 Copynumber: 3.8 Consensus size: 21
9081666 ATATAAACTT
9081676 AAATAACTATACATAAATATCC
1 AAATAACTA-ACATAAATATCC
9081698 AAATAAC-AACATAAACT-T--
1 AAATAACTAACATAAA-TATCC
* *
9081716 AAATAACTAAACACAAAGATCC
1 AAATAACT-AACATAAATATCC
* *
9081738 AAACAAATAACATAAA
1 AAATAACTAACATAAA
9081754 CTTAAATAAC
Statistics
Matches: 45, Mismatches: 5, Indels: 13
0.71 0.08 0.21
Matches are distributed among these distances:
18 7 0.16
20 16 0.36
21 9 0.20
22 13 0.29
ACGTcount: A:0.62, C:0.18, G:0.01, T:0.19
Consensus pattern (21 bp):
AAATAACTAACATAAATATCC
Found at i:9081728 original size:20 final size:20
Alignment explanation
Indices: 9081668--9081728 Score: 65
Period size: 20 Copynumber: 3.0 Consensus size: 20
9081658 ATACAACGAT
*
9081668 ATAAACTTAAATAACTATAC
1 ATAAACTTAAATAACTAAAC
9081688 ATAAA-TATCCAAATAAC--AAC
1 ATAAACT-T--AAATAACTAAAC
9081708 ATAAACTTAAATAACTAAAC
1 ATAAACTTAAATAACTAAAC
9081728 A
1 A
9081729 CAAAGATCCA
Statistics
Matches: 34, Mismatches: 1, Indels: 12
0.72 0.02 0.26
Matches are distributed among these distances:
18 7 0.21
19 1 0.03
20 18 0.53
21 1 0.03
22 7 0.21
ACGTcount: A:0.59, C:0.16, G:0.00, T:0.25
Consensus pattern (20 bp):
ATAAACTTAAATAACTAAAC
Found at i:9094956 original size:23 final size:23
Alignment explanation
Indices: 9094930--9094978 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
9094920 CCTCAAGAGC
* *
9094930 TTTGACCTTTGTAGACGCTATAA
1 TTTGACCTCTGTAGACACTATAA
9094953 TTTGACCTCTGTAGACACTATAA
1 TTTGACCTCTGTAGACACTATAA
9094976 TTT
1 TTT
9094979 TATATAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.41
Consensus pattern (23 bp):
TTTGACCTCTGTAGACACTATAA
Found at i:9097719 original size:59 final size:58
Alignment explanation
Indices: 9097552--9097970 Score: 516
Period size: 59 Copynumber: 7.1 Consensus size: 58
9097542 CTCTCGACAA
* *
9097552 GTTCGATTTAAAAATTAAAATTCCTAGACTTGATATAGGCTCGACCTATCTTAAAACAG
1 GTTCGATTAAAAAATT-AAATTCCTAGACTTGATCTAGGCTCGACCTATCTTAAAACAG
* *
9097611 GTTCAATTTAAAAAATTAACATTCCTAGACTTGATCTAGGCTC-AGCCTATCTTAAAACTG
1 GTTCGA-TTAAAAAATTAA-ATTCCTAGACTTGATCTAGGCTCGA-CCTATCTTAAAACAG
* * * * * *
9097671 GTTCGAATCAAAAATTAAATTTTCTATACTTAATCTAGGCTCGACCTATCTCAAAACAG
1 GTTCGATTAAAAAATTAAA-TTCCTAGACTTGATCTAGGCTCGACCTATCTTAAAACAG
* * * * *
9097730 GTTCGATTCAAATATTAAAATTCTTAGACTTAATCTAGGCTCGACCTATCTTAAAACAA
1 GTTCGATTAAAAAATT-AAATTCCTAGACTTGATCTAGGCTCGACCTATCTTAAAACAG
* *
9097789 GTTCGATTTAAAAAATTAACATTCCTAGACTTGATATAGGCTCTACCTATCTTAAAACAG
1 GTTCGA-TTAAAAAATTAA-ATTCCTAGACTTGATCTAGGCTCGACCTATCTTAAAACAG
* * * *
9097849 GTTCGAATAAAAAATTGAAATTCCTATACTTAATCTAGGCTCGACCTATCTCAAAACAG
1 GTTCGATTAAAAAATT-AAATTCCTAGACTTGATCTAGGCTCGACCTATCTTAAAACAG
* * * *
9097908 GTTCGATTCAAATATTGAAATTCCTACACTTGATCTAGGTTCGACCTATCTTAAAACAG
1 GTTCGATTAAAAAATT-AAATTCCTAGACTTGATCTAGGCTCGACCTATCTTAAAACAG
9097967 GTTC
1 GTTC
9097971 AACTTAATTG
Statistics
Matches: 312, Mismatches: 39, Indels: 18
0.85 0.11 0.05
Matches are distributed among these distances:
58 1 0.00
59 206 0.66
60 105 0.34
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.33
Consensus pattern (58 bp):
GTTCGATTAAAAAATTAAATTCCTAGACTTGATCTAGGCTCGACCTATCTTAAAACAG
Found at i:9097837 original size:119 final size:117
Alignment explanation
Indices: 9097548--9097970 Score: 542
Period size: 119 Copynumber: 3.6 Consensus size: 117
9097538 CTATCTCTCG
*
9097548 ACAAGTTCGATTTAAAAATTAAAATTCCTAGACTTGATATAGGCTCGACCTATCTTAAAACAGGT
1 ACAAGTTCGATTCAAAAATT-AAATTCCTAGACTTGATATAGGCTCGACCTATCTTAAAACAGGT
* * *
9097613 TCAATTTAAAAAATTAACATTCCTAGACTTGATCTAGGCTC-AGCCTATCTTAAA
65 TCGA-TTAAAAAATTAAAATTCCTAGACTTAATCTAGGCTCGA-CCTATCTTAAA
** * * * * * *
9097667 ACTGGTTCGAATCAAAAATTAAATTTTCTATACTTAATCTAGGCTCGACCTATCTCAAAACAGGT
1 ACAAGTTCGATTCAAAAATTAAA-TTCCTAGACTTGATATAGGCTCGACCTATCTTAAAACAGGT
* * *
9097732 TCGATTCAAATATTAAAATTCTTAGACTTAATCTAGGCTCGACCTATCTTAAA
65 TCGATTAAAAAATTAAAATTCCTAGACTTAATCTAGGCTCGACCTATCTTAAA
* *
9097785 ACAAGTTCGATTTAAAAAATTAACATTCCTAGACTTGATATAGGCTCTACCTATCTTAAAACAGG
1 ACAAGTTCGA-TTCAAAAATTAA-ATTCCTAGACTTGATATAGGCTCGACCTATCTTAAAACAGG
* * * *
9097850 TTCGAATAAAAAATTGAAATTCCTATACTTAATCTAGGCTCGACCTATCTCAAA
64 TTCGATTAAAAAATTAAAATTCCTAGACTTAATCTAGGCTCGACCTATCTTAAA
* * * * *
9097904 ACAGGTTCGATTCAAATATTGAAATTCCTACACTTGATCTAGGTTCGACCTATCTTAAAACAGGT
1 ACAAGTTCGATTCAAAAATT-AAATTCCTAGACTTGATATAGGCTCGACCTATCTTAAAACAGGT
9097969 TC
65 TC
9097971 AACTTAATTG
Statistics
Matches: 260, Mismatches: 39, Indels: 11
0.84 0.13 0.04
Matches are distributed among these distances:
118 101 0.39
119 158 0.61
120 1 0.00
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.32
Consensus pattern (117 bp):
ACAAGTTCGATTCAAAAATTAAATTCCTAGACTTGATATAGGCTCGACCTATCTTAAAACAGGTT
CGATTAAAAAATTAAAATTCCTAGACTTAATCTAGGCTCGACCTATCTTAAA
Found at i:9097840 original size:178 final size:178
Alignment explanation
Indices: 9097534--9097977 Score: 685
Period size: 178 Copynumber: 2.5 Consensus size: 178
9097524 TTTCTAAGTA
*** * * * *
9097534 CGACCTATCTCTCGACAAGTTCGATTTAAAAATTAAAATTCCTAGACTTGATATAGGCTCGACCT
1 CGACCTATCTCAAAACAGGTTCGATTCAAATATTAAAATTCCTAGACTTGATCTAGGCTCGACCT
*
9097599 ATCTTAAAACAGGTTCAATTTAAAAAATTAACATTCCTAGACTTGATCTAGGCTCAGCCTATCTT
66 ATCTTAAAACAGGTTCAATTTAAAAAATTAACATTCCTAGACTTGATATAGGCTCAGCCTATCTT
* * *
9097664 AAAACTGGTTCGAATCAAAAATT-AAATTTTCTATACTTAATCTAGGCT
131 AAAACAGGTTCGAATAAAAAATTGAAA-TTCCTATACTTAATCTAGGCT
* *
9097712 CGACCTATCTCAAAACAGGTTCGATTCAAATATTAAAATTCTTAGACTTAATCTAGGCTCGACCT
1 CGACCTATCTCAAAACAGGTTCGATTCAAATATTAAAATTCCTAGACTTGATCTAGGCTCGACCT
* *
9097777 ATCTTAAAACAAGTTCGATTTAAAAAATTAACATTCCTAGACTTGATATAGGCTCTA-CCTATCT
66 ATCTTAAAACAGGTTCAATTTAAAAAATTAACATTCCTAGACTTGATATAGGCTC-AGCCTATCT
9097841 TAAAACAGGTTCGAATAAAAAATTGAAATTCCTATACTTAATCTAGGCT
130 TAAAACAGGTTCGAATAAAAAATTGAAATTCCTATACTTAATCTAGGCT
* * *
9097890 CGACCTATCTCAAAACAGGTTCGATTCAAATATTGAAATTCCTACACTTGATCTAGGTTCGACCT
1 CGACCTATCTCAAAACAGGTTCGATTCAAATATTAAAATTCCTAGACTTGATCTAGGCTCGACCT
*
9097955 ATCTTAAAACAGGTTCAACTTAA
66 ATCTTAAAACAGGTTCAATTTAA
9097978 TTGGAGTAAC
Statistics
Matches: 241, Mismatches: 23, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
178 237 0.98
179 4 0.02
ACGTcount: A:0.36, C:0.20, G:0.12, T:0.32
Consensus pattern (178 bp):
CGACCTATCTCAAAACAGGTTCGATTCAAATATTAAAATTCCTAGACTTGATCTAGGCTCGACCT
ATCTTAAAACAGGTTCAATTTAAAAAATTAACATTCCTAGACTTGATATAGGCTCAGCCTATCTT
AAAACAGGTTCGAATAAAAAATTGAAATTCCTATACTTAATCTAGGCT
Found at i:9115041 original size:2 final size:2
Alignment explanation
Indices: 9115034--9115072 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
9115024 AAAGTATAAA
9115034 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
9115073 TATATATATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:9115077 original size:2 final size:2
Alignment explanation
Indices: 9115072--9115106 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
9115062 ACACACACAC
9115072 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
9115107 AATAATAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:9116069 original size:2 final size:2
Alignment explanation
Indices: 9116058--9116116 Score: 77
Period size: 2 Copynumber: 29.5 Consensus size: 2
9116048 AAAAAATGGA
*
9116058 AT AT AA AT AT AT AT NA- AT CAT AT AT AT A- AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT -AT AT -AT AT AT AT AT AT AT AT AT AT AT AT
9116100 AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT A
9116117 ATTATGAAAT
Statistics
Matches: 51, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
1 2 0.04
2 46 0.90
3 3 0.06
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:9117514 original size:23 final size:23
Alignment explanation
Indices: 9117446--9117556 Score: 100
Period size: 23 Copynumber: 4.8 Consensus size: 23
9117436 GCAGCCACAA
* *
9117446 CGTGTAACATTTTGCAA-CCATGG
1 CGTGTAACATCTTG-AAGCCTTGG
* * * * *
9117469 TGTGTAACAACTAGCAGCTTTGG
1 CGTGTAACATCTTGAAGCCTTGG
9117492 CGTGTAACATCTTGAAGCCTTGG
1 CGTGTAACATCTTGAAGCCTTGG
**
9117515 CACGTAACAT-TATGAAGCCTTGG
1 CGTGTAACATCT-TGAAGCCTTGG
*
9117538 CGTGTAACATCTTGGAGCC
1 CGTGTAACATCTTGAAGCC
9117557 ATAACTTGTA
Statistics
Matches: 68, Mismatches: 17, Indels: 6
0.75 0.19 0.07
Matches are distributed among these distances:
22 2 0.03
23 65 0.96
24 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (23 bp):
CGTGTAACATCTTGAAGCCTTGG
Found at i:9117568 original size:46 final size:46
Alignment explanation
Indices: 9117488--9117600 Score: 120
Period size: 46 Copynumber: 2.5 Consensus size: 46
9117478 ACTAGCAGCT
* * **
9117488 TTGGCGTGTAACATCTTGAAGCCTTGGCACGTAACATTATGA-AGCC
1 TTGGCGTGTAACATCTTGGAGCCATAACACGTAACATT-TGAGAGCC
** * *
9117534 TTGGCGTGTAACATCTTGGAGCCATAACTTGTAACATTTTAGAGTC
1 TTGGCGTGTAACATCTTGGAGCCATAACACGTAACATTTGAGAGCC
* *
9117580 ATGGTGTGTAACATCTTGGAG
1 TTGGCGTGTAACATCTTGGAG
9117601 TCATGGTGTG
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
45 2 0.04
46 54 0.96
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.32
Consensus pattern (46 bp):
TTGGCGTGTAACATCTTGGAGCCATAACACGTAACATTTGAGAGCC
Found at i:9117589 original size:23 final size:23
Alignment explanation
Indices: 9117563--9117610 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
9117553 AGCCATAACT
*
9117563 TGTAACATTTTAGAGTCATGGTG
1 TGTAACATCTTAGAGTCATGGTG
*
9117586 TGTAACATCTTGGAGTCATGGTG
1 TGTAACATCTTAGAGTCATGGTG
9117609 TG
1 TG
9117611 CAGTTTATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.23, C:0.10, G:0.29, T:0.38
Consensus pattern (23 bp):
TGTAACATCTTAGAGTCATGGTG
Found at i:9119018 original size:22 final size:20
Alignment explanation
Indices: 9118964--9119019 Score: 69
Period size: 22 Copynumber: 2.6 Consensus size: 20
9118954 ATAAAAATAT
9118964 ATAATAAAAATTAATCAAAAA
1 ATAATAAAAA-TAATCAAAAA
9118985 ATAA-ATAAAATAATCAAATAA
1 ATAATA-AAAATAATCAAA-AA
9119006 CATAATAAAAATAA
1 -ATAATAAAAATAA
9119020 AAATTTTAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
20 9 0.29
21 10 0.32
22 11 0.35
23 1 0.03
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.23
Consensus pattern (20 bp):
ATAATAAAAATAATCAAAAA
Found at i:9119051 original size:20 final size:20
Alignment explanation
Indices: 9118964--9119055 Score: 70
Period size: 20 Copynumber: 4.7 Consensus size: 20
9118954 ATAAAAATAT
9118964 ATAATAAAAATTAATCAAAAA
1 ATAAT-AAAATTAATCAAAAA
9118985 ATAAATAAAA-TAATCAAATAA
1 AT-AATAAAATTAATCAAA-AA
9119006 CATAAT-AAA--AAT--AAAA
1 -ATAATAAAATTAATCAAAAA
** *
9119022 ATTTTAAAAATTAATTAAAAA
1 ATAAT-AAAATTAATCAAAAA
9119043 ATAATAAAATTAA
1 ATAATAAAATTAA
9119056 AAAAAAAAGA
Statistics
Matches: 58, Mismatches: 4, Indels: 19
0.72 0.05 0.23
Matches are distributed among these distances:
15 3 0.05
16 2 0.03
17 5 0.09
19 6 0.10
20 19 0.33
21 18 0.31
22 5 0.09
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (20 bp):
ATAATAAAATTAATCAAAAA
Found at i:9119707 original size:27 final size:27
Alignment explanation
Indices: 9119665--9119723 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 27
9119655 GAAAGAGGAG
*
9119665 GAGAGCAAAAGGAAAG-AAAAGAAA-A
1 GAGAGAAAAAGGAAAGAAAAAGAAAGA
9119690 GAGAGAAAGAAGGAAAAGAAAAAGAAAGA
1 GAGAGAAA-AAGG-AAAGAAAAAGAAAGA
9119719 GAGAG
1 GAGAG
9119724 GGGAAGGAGA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 7 0.24
26 4 0.14
27 4 0.14
28 8 0.28
29 6 0.21
ACGTcount: A:0.66, C:0.02, G:0.32, T:0.00
Consensus pattern (27 bp):
GAGAGAAAAAGGAAAGAAAAAGAAAGA
Found at i:9119809 original size:24 final size:24
Alignment explanation
Indices: 9119782--9119827 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
9119772 TGGCCACAAA
*
9119782 AGAAAGAAAGATAGAGGGAAAAAG
1 AGAAAGAAAGAGAGAGGGAAAAAG
*
9119806 AGAAAGAGAGAGAGAGGGAAAA
1 AGAAAGAAAGAGAGAGGGAAAA
9119828 TTTTAGAGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.61, C:0.00, G:0.37, T:0.02
Consensus pattern (24 bp):
AGAAAGAAAGAGAGAGGGAAAAAG
Found at i:9126625 original size:29 final size:29
Alignment explanation
Indices: 9126567--9126626 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
9126557 ATCATTAGTT
9126567 ATAAAAAGCTTATTTGGCTCAAAACAAAA
1 ATAAAAAGCTTATTTGGCTCAAAACAAAA
* * * *
9126596 ATAAAAAGATTTATTTTGTTCAAAATAAAA
1 ATAAAAAG-CTTATTTGGCTCAAAACAAAA
9126626 A
1 A
9126627 GTATAGGAGT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 8 0.31
30 18 0.69
ACGTcount: A:0.53, C:0.08, G:0.08, T:0.30
Consensus pattern (29 bp):
ATAAAAAGCTTATTTGGCTCAAAACAAAA
Found at i:9126803 original size:30 final size:30
Alignment explanation
Indices: 9126738--9126805 Score: 82
Period size: 30 Copynumber: 2.3 Consensus size: 30
9126728 TTCAATCAAG
* *
9126738 CTTTTATATTTTTATTTTAAACCAAAGAAG
1 CTTTTATACTTTTATTTTAAACCAAAGAAA
** *
9126768 CTTTTATACTTTTATTTTAAGTCAAATAAA
1 CTTTTATACTTTTATTTTAAACCAAAGAAA
*
9126798 TTTTTATA
1 CTTTTATA
9126806 ACTAATGATT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.35, C:0.09, G:0.04, T:0.51
Consensus pattern (30 bp):
CTTTTATACTTTTATTTTAAACCAAAGAAA
Found at i:9126918 original size:33 final size:33
Alignment explanation
Indices: 9126867--9126933 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
9126857 GTCAACGTGG
*
9126867 TATGTTAACATATTATAATTAATGATGACATGA
1 TATGTTAACATATCATAATTAATGATGACATGA
* * * *
9126900 TATGTTAACGTATCATAATTGATTATGACGTGA
1 TATGTTAACATATCATAATTAATGATGACATGA
9126933 T
1 T
9126934 CTACTAATTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.37, C:0.07, G:0.15, T:0.40
Consensus pattern (33 bp):
TATGTTAACATATCATAATTAATGATGACATGA
Found at i:9130275 original size:14 final size:14
Alignment explanation
Indices: 9130256--9130282 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
9130246 CAAAAATTAT
9130256 AACTTATAAAAAAG
1 AACTTATAAAAAAG
9130270 AACTTATAAAAAA
1 AACTTATAAAAAA
9130283 AATTTACCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.67, C:0.07, G:0.04, T:0.22
Consensus pattern (14 bp):
AACTTATAAAAAAG
Found at i:9131837 original size:135 final size:135
Alignment explanation
Indices: 9131587--9131857 Score: 350
Period size: 135 Copynumber: 2.0 Consensus size: 135
9131577 AACTATCACA
* * *
9131587 TGGATGATCAGGTAAGCTAGTGTAGAGGGTTCTTTTCGTTAGGGAAAGAGGACGTATTGTAATGA
1 TGGATGATCAGGTAAGCTAGTGTAAAGGGTTCTTTTAGTTAGGGAAAGAGGACGTATTGCAATGA
* * *
9131652 GTGAATCGAGATACAGTAGAGGCGGCAGAAAGGAAGACTAGAGCAGTCCTTGAAACATAAGTGCT
66 GTGAATCGAGATACAGTAAAGGCGACAGAAAGGAAGACTAGAGCAATCCTTGAAACATAAGTGCT
9131717 TTGGG
131 TTGGG
* ** *
9131722 TGGATGATCAGGTAATCTAGTGTAAAGGGTTCTTTTAGTTAGGGAGGGAGGACGTGTTGCAATGA
1 TGGATGATCAGGTAAGCTAGTGTAAAGGGTTCTTTTAGTTAGGGAAAGAGGACGTATTGCAATGA
* * * * * *
9131787 GTGAATTGGGATGC-GCTAAAGGCGACA-AAGAGGAAGACT-GAAGCAATCCTTGAAGCGTATGT
66 GTGAATCGAGATACAG-TAAAGGCGACAGAA-AGGAAGACTAG-AGCAATCCTTGAAACATAAGT
9131849 GCTTTGGG
128 GCTTTGGG
9131857 T
1 T
9131858 AGCAGGTGGC
Statistics
Matches: 117, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
134 4 0.03
135 113 0.97
ACGTcount: A:0.30, C:0.11, G:0.34, T:0.25
Consensus pattern (135 bp):
TGGATGATCAGGTAAGCTAGTGTAAAGGGTTCTTTTAGTTAGGGAAAGAGGACGTATTGCAATGA
GTGAATCGAGATACAGTAAAGGCGACAGAAAGGAAGACTAGAGCAATCCTTGAAACATAAGTGCT
TTGGG
Done.