Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41236440
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2030548 characters in sequence are not A, C, G, or T
File 38 of 106
Found at i:14469562 original size:15 final size:14
Alignment explanation
Indices: 14469537--14469576 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 14
14469527 TTATATGAAT
*
14469537 TTTATAATTTTATA
1 TTTATATTTTTATA
14469551 TATTATATTTTTATA
1 T-TTATATTTTTATA
14469566 TTTAATATTTT
1 TTT-ATATTTT
14469577 AAATTTAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 3 0.13
15 20 0.87
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TTTATATTTTTATA
Found at i:14469576 original size:14 final size:14
Alignment explanation
Indices: 14469543--14469584 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
14469533 GAATTTTATA
14469543 ATTTTATATATT-AT
1 ATTTTATAT-TTAAT
14469557 ATTTTTATATTTAAT
1 A-TTTTATATTTAAT
*
14469572 ATTTTAAATTTAA
1 ATTTTATATTTAA
14469585 ATAGAAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
14 14 0.56
15 11 0.44
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (14 bp):
ATTTTATATTTAAT
Found at i:14473134 original size:4 final size:4
Alignment explanation
Indices: 14473120--14473185 Score: 59
Period size: 4 Copynumber: 17.0 Consensus size: 4
14473110 GAAGAAAGGG
* *
14473120 GAAA GGAAA GAAA GAAA G-GA GAAA GGAAA GAAA GAAA G-GA GAAA G-AA
1 GAAA -GAAA GAAA GAAA GAAA GAAA -GAAA GAAA GAAA GAAA GAAA GAAA
*
14473167 -AAA GAAA GAAA GGAA GAAA
1 GAAA GAAA GAAA GAAA GAAA
14473186 AAGCTTGGTT
Statistics
Matches: 50, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
3 8 0.16
4 34 0.68
5 8 0.16
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:14473136 original size:20 final size:20
Alignment explanation
Indices: 14473111--14473185 Score: 114
Period size: 20 Copynumber: 3.6 Consensus size: 20
14473101 GATCAGTTGG
*
14473111 AAGAAAGGGGAAAGGAAAGA
1 AAGAAAGGAGAAAGGAAAGA
14473131 AAGAAAGGAGAAAGGAAAGA
1 AAGAAAGGAGAAAGGAAAGA
*
14473151 AAGAAAGGAGAAAGAAAAAGA
1 AAGAAAGGAGAAAG-GAAAGA
14473172 AAGAAAGGAAGAAA
1 AAGAAAGG-AGAAA
14473186 AAGCTTGGTT
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
20 33 0.65
21 13 0.25
22 5 0.10
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (20 bp):
AAGAAAGGAGAAAGGAAAGA
Found at i:14482153 original size:34 final size:36
Alignment explanation
Indices: 14482061--14482174 Score: 119
Period size: 36 Copynumber: 3.2 Consensus size: 36
14482051 TCTCACTAGC
* *
14482061 TCATGTGCACTTCCACACCGCACATA-GC-TAGAATCA
1 TCATGTGCACTCCCACACCGCACA-AGGCATA-TATCA
*
14482097 TCTTGTGCACTCCCACACCGCACAAGGCA-ATATCA
1 TCATGTGCACTCCCACACCGCACAAGGCATATATCA
* * *
14482132 TCATGTGCAC-CCCACATCGCACATGGCATATGTCA
1 TCATGTGCACTCCCACACCGCACAAGGCATATATCA
14482167 TCAGTGTG
1 TCA-TGTG
14482175 TGCACTCACA
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
34 16 0.24
35 22 0.33
36 29 0.43
ACGTcount: A:0.27, C:0.33, G:0.17, T:0.23
Consensus pattern (36 bp):
TCATGTGCACTCCCACACCGCACAAGGCATATATCA
Found at i:14482227 original size:52 final size:52
Alignment explanation
Indices: 14482149--14482253 Score: 174
Period size: 52 Copynumber: 2.0 Consensus size: 52
14482139 CACCCCACAT
* *
14482149 CGCACATGGCATATGTCATCAGTGTGTGCACTCACACAACACACCACTATCA
1 CGCACATGGCATATATCATCAGTGTGTCCACTCACACAACACACCACTATCA
* *
14482201 CGCACATGGCATATATCATTAGTGTGTCCACTCACACCACACACCACTATCA
1 CGCACATGGCATATATCATCAGTGTGTCCACTCACACAACACACCACTATCA
14482253 C
1 C
14482254 CGTCATGTGC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.30, C:0.34, G:0.13, T:0.22
Consensus pattern (52 bp):
CGCACATGGCATATATCATCAGTGTGTCCACTCACACAACACACCACTATCA
Found at i:14496051 original size:38 final size:39
Alignment explanation
Indices: 14496009--14496111 Score: 129
Period size: 38 Copynumber: 2.6 Consensus size: 39
14495999 ATATTGCCCG
* *
14496009 TGTGCACGATGTGGGGGGATGTACACGACGACAT-TA-GA
1 TGTGCACGATGTGGGGGGATGCACACGACGAC-TCAACGA
* * *
14496047 TGTGCACGATGTGGAGGGATGCACACGATGACTCCAACTA
1 TGTGCACGATGTGGGGGGATGCACACGACGACT-CAACGA
14496087 TGTGCACGATGTGGGGGGATGCACA
1 TGTGCACGATGTGGGGGGATGCACA
14496112 TGAGCTGGGG
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
37 1 0.02
38 29 0.52
39 1 0.02
40 25 0.45
ACGTcount: A:0.25, C:0.18, G:0.36, T:0.20
Consensus pattern (39 bp):
TGTGCACGATGTGGGGGGATGCACACGACGACTCAACGA
Found at i:14497741 original size:96 final size:89
Alignment explanation
Indices: 14497585--14497770 Score: 309
Period size: 96 Copynumber: 2.0 Consensus size: 89
14497575 TGTATTCTTT
14497585 CACTCTCTCACTTTAAAACCCTTGAAAAATCTTATTTCCATACTCTCTCTCACTAGTTAGGTGTT
1 CACTCTCTCACTTTAAAACCCTTGAAAAATCTTATTTCCATACTCTCTCTCACTAGTTAGGTGTT
14497650 TTAGAGAGAGAGAGAGAGAGGAAG
66 TTAGAGAGAGAGAGAGAGAGGAAG
14497674 CNACTCTCTCACTTTAAAACCCTTTACGTAAAAATACTTATTTCCTATACTCTCTCTCACTAGTT
1 C-ACTCTCTCACTTTAAAACCC-TT--G-AAAAAT-CTTATTTCC-ATACTCTCTCTCACTAGTT
14497739 AGGTGTTTTAGAGAGAGAGAGAGAGAGGAAG
59 AGGTGTTTTAGAGAGAGAGAGAGAGAGGAAG
14497770 C
1 C
14497771 TTTACAATAG
Statistics
Matches: 90, Mismatches: 0, Indels: 7
0.93 0.00 0.07
Matches are distributed among these distances:
89 1 0.01
90 20 0.22
91 2 0.02
93 1 0.01
94 6 0.07
95 9 0.10
96 51 0.57
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.31
Consensus pattern (89 bp):
CACTCTCTCACTTTAAAACCCTTGAAAAATCTTATTTCCATACTCTCTCTCACTAGTTAGGTGTT
TTAGAGAGAGAGAGAGAGAGGAAG
Found at i:14501399 original size:2 final size:2
Alignment explanation
Indices: 14501394--14501429 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
14501384 TGTGTGTGTG
*
14501394 TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14501430 AGGGTAGGAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:14501679 original size:2 final size:2
Alignment explanation
Indices: 14501672--14501698 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
14501662 TGCTCCACGG
14501672 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
14501699 TTGGATTCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14501765 original size:117 final size:117
Alignment explanation
Indices: 14501558--14501778 Score: 379
Period size: 117 Copynumber: 1.9 Consensus size: 117
14501548 CTCATCAAGC
* * *
14501558 ATATATATATATATATATATATATTCGGATTCTCAAGTCCACACCCCCAAATTTATTTCTTTCAA
1 ATATATATATATATATATATATATTCGGATTCTCAAGTCAACACCCCAAAACTTATTTCTTTCAA
*
14501623 TGATAGTAAGATGAACACTTTACATTGAATTTTGAATTTTGCTCCACGGTAT
66 TGATAGTAAGATGAACACTTGACATTGAATTTTGAATTTTGCTCCACGGTAT
*
14501675 ATATATATATATATATATATATATTTGGATTCTCAAGTCAACACCCCAAAACTTATTTCTTTCAA
1 ATATATATATATATATATATATATTCGGATTCTCAAGTCAACACCCCAAAACTTATTTCTTTCAA
* *
14501740 TGATAGTAGGATGAACGCTTGACATTGAATTTTGAATTT
66 TGATAGTAAGATGAACACTTGACATTGAATTTTGAATTT
14501779 CACTCCACTA
Statistics
Matches: 97, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
117 97 1.00
ACGTcount: A:0.34, C:0.15, G:0.11, T:0.39
Consensus pattern (117 bp):
ATATATATATATATATATATATATTCGGATTCTCAAGTCAACACCCCAAAACTTATTTCTTTCAA
TGATAGTAAGATGAACACTTGACATTGAATTTTGAATTTTGCTCCACGGTAT
Found at i:14525556 original size:43 final size:43
Alignment explanation
Indices: 14525508--14525620 Score: 138
Period size: 43 Copynumber: 2.6 Consensus size: 43
14525498 CGTCATTATT
* * **
14525508 ATCACCAGCTCATGCACACTCCCTACTCACACAT-GGCTGGGTC
1 ATCACCGGCTTATGCACACTCCCTACTCACACATAATC-GGGTC
* *
14525551 ATCACCGGGTTATGCGCACTCCCTACTCACACATAATCGGGTC
1 ATCACCGGCTTATGCACACTCCCTACTCACACATAATCGGGTC
* *
14525594 ATCATCGGCTTATGCACAATCCCTACT
1 ATCACCGGCTTATGCACACTCCCTACT
14525621 TGCATATAGC
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
43 58 0.98
44 1 0.02
ACGTcount: A:0.24, C:0.36, G:0.16, T:0.24
Consensus pattern (43 bp):
ATCACCGGCTTATGCACACTCCCTACTCACACATAATCGGGTC
Found at i:14528586 original size:46 final size:46
Alignment explanation
Indices: 14528527--14528617 Score: 155
Period size: 46 Copynumber: 2.0 Consensus size: 46
14528517 TGAATTTGCT
* *
14528527 AAACAATGATTTTAGGTTGTTATATCTTGTGTTGCTTTATGTTGTA
1 AAACAATGATTTTAGGTTGTTATATCTGGGGTTGCTTTATGTTGTA
*
14528573 AAACAATGGTTTTAGGTTGTTATATCTGGGGTTGCTTTATGTTGT
1 AAACAATGATTTTAGGTTGTTATATCTGGGGTTGCTTTATGTTGT
14528618 TGAACATTGA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.22, C:0.07, G:0.23, T:0.48
Consensus pattern (46 bp):
AAACAATGATTTTAGGTTGTTATATCTGGGGTTGCTTTATGTTGTA
Found at i:14534023 original size:20 final size:21
Alignment explanation
Indices: 14533973--14534025 Score: 58
Period size: 20 Copynumber: 2.6 Consensus size: 21
14533963 ATACTTAAAG
14533973 TAATTTAAAAC-AAAATAACAT
1 TAATTT-AAACTAAAATAACAT
* *
14533994 AAAATT-AACTAAAATAAC-T
1 TAATTTAAACTAAAATAACAT
14534013 TAATTTAAACTAA
1 TAATTTAAACTAA
14534026 TCAACATATA
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
19 8 0.31
20 14 0.54
21 4 0.15
ACGTcount: A:0.60, C:0.09, G:0.00, T:0.30
Consensus pattern (21 bp):
TAATTTAAACTAAAATAACAT
Found at i:14551347 original size:34 final size:33
Alignment explanation
Indices: 14551304--14551369 Score: 105
Period size: 34 Copynumber: 2.0 Consensus size: 33
14551294 GACTAAAAAT
* *
14551304 GATTGTTCGGAGTTTGAGGGTTCGTTTGGGGTC
1 GATTGTTCGGAGTTCGAGGGTTCATTTGGGGTC
14551337 NGATTGTTCGGAGTTCGAGGGTTCATTTGGGGT
1 -GATTGTTCGGAGTTCGAGGGTTCATTTGGGGT
14551370 AAAATTGGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.11, C:0.09, G:0.41, T:0.38
Consensus pattern (33 bp):
GATTGTTCGGAGTTCGAGGGTTCATTTGGGGTC
Found at i:14583938 original size:28 final size:29
Alignment explanation
Indices: 14583890--14583953 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 29
14583880 NNAAATTTTT
* ** *
14583890 AAAAATTACACTTTTGCCCCCGTAAAGTG
1 AAAAATTACACTTTTGACCCCAAAAAATG
*
14583919 AAAAATTACA-TTTTTACCCCAAAAAATG
1 AAAAATTACACTTTTGACCCCAAAAAATG
14583947 AAAAATT
1 AAAAATT
14583954 GCCCATAGAC
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 20 0.67
29 10 0.33
ACGTcount: A:0.45, C:0.19, G:0.08, T:0.28
Consensus pattern (29 bp):
AAAAATTACACTTTTGACCCCAAAAAATG
Found at i:14592989 original size:11 final size:11
Alignment explanation
Indices: 14592963--14593006 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
14592953 TTATGGAAAC
*
14592963 CAAGATGAAATT
1 CAAG-TGAAATG
14592975 CAAGT-AAGATG
1 CAAGTGAA-ATG
14592986 CAAGTGAAATG
1 CAAGTGAAATG
14592997 CAAGTGAAAT
1 CAAGTGAAAT
14593007 TACTTAGCTA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
10 2 0.07
11 21 0.72
12 6 0.21
ACGTcount: A:0.48, C:0.09, G:0.23, T:0.20
Consensus pattern (11 bp):
CAAGTGAAATG
Found at i:14596375 original size:16 final size:15
Alignment explanation
Indices: 14596354--14596401 Score: 60
Period size: 15 Copynumber: 3.1 Consensus size: 15
14596344 TAATGTAGAG
14596354 AAATAAAATAAATAA
1 AAATAAAATAAATAA
*
14596369 TAAATAAAAATAACTAA
1 -AAAT-AAAATAAATAA
*
14596386 AAAGAAAATAAATAA
1 AAATAAAATAAATAA
14596401 A
1 A
14596402 GAAAAAGGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
15 11 0.39
16 7 0.25
17 10 0.36
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.19
Consensus pattern (15 bp):
AAATAAAATAAATAA
Found at i:14596681 original size:21 final size:20
Alignment explanation
Indices: 14596643--14596680 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
14596633 GGCTTACCAC
14596643 TTTTTTTTTTGAAATTTTAA
1 TTTTTTTTTTGAAATTTTAA
14596663 TTTTTTTTTTGAAATTTT
1 TTTTTTTTTTGAAATTTT
14596681 TTACATGAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (20 bp):
TTTTTTTTTTGAAATTTTAA
Found at i:14598154 original size:21 final size:21
Alignment explanation
Indices: 14598112--14598200 Score: 115
Period size: 21 Copynumber: 4.2 Consensus size: 21
14598102 TTGAATGGAG
* * *
14598112 GCATCAGTCCTTATCATAAAT
1 GCATCAGTCTTTGTCATGAAT
* *
14598133 GCATCCGTCTTTGTTATGAAT
1 GCATCAGTCTTTGTCATGAAT
14598154 GCATCAGTCTTTGTCATGAAT
1 GCATCAGTCTTTGTCATGAAT
*
14598175 GCATCAATCTTTGTCATGAATT
1 GCATCAGTCTTTGTCATGAA-T
14598197 GCAT
1 GCAT
14598201 GAACATATCC
Statistics
Matches: 59, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
21 54 0.92
22 5 0.08
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (21 bp):
GCATCAGTCTTTGTCATGAAT
Found at i:14606276 original size:17 final size:17
Alignment explanation
Indices: 14606254--14606286 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
14606244 ATAATAATAA
14606254 AATAA-GAGTTATTATTC
1 AATAAGGAGTT-TTATTC
14606271 AATAAGGAGTTTTATT
1 AATAAGGAGTTTTATT
14606287 TTATCAAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.39, C:0.03, G:0.15, T:0.42
Consensus pattern (17 bp):
AATAAGGAGTTTTATTC
Found at i:14609626 original size:21 final size:20
Alignment explanation
Indices: 14609602--14609649 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 20
14609592 ATCTTACCTT
*
14609602 TTTTTCACTTGTTTCCTTGAA
1 TTTTTCACTT-TTCCCTTGAA
*
14609623 TTTTCACACTTTTCCCTTGAA
1 TTTT-TCACTTTTCCCTTGAA
14609644 TTTTTC
1 TTTTTC
14609650 CACCTAGGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 17 0.74
22 5 0.22
ACGTcount: A:0.15, C:0.23, G:0.06, T:0.56
Consensus pattern (20 bp):
TTTTTCACTTTTCCCTTGAA
Found at i:14609649 original size:22 final size:22
Alignment explanation
Indices: 14609607--14609647 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
14609597 ACCTTTTTTT
*
14609607 CACTTGTTTCCTTGAATTTTCA
1 CACTTGTTCCCTTGAATTTTCA
14609629 CACTT-TTCCCTTGAATTTT
1 CACTTGTTCCCTTGAATTTT
14609648 TCCACCTAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.17, C:0.24, G:0.07, T:0.51
Consensus pattern (22 bp):
CACTTGTTCCCTTGAATTTTCA
Found at i:14612657 original size:20 final size:19
Alignment explanation
Indices: 14612632--14612676 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
14612622 TTTTGGACCC
*
14612632 ATTTGACTCATTGGAGTATA
1 ATTTGACT-AATGGAGTATA
* *
14612652 ATTTGAGTAATGGAGTATG
1 ATTTGACTAATGGAGTATA
14612671 ATTTGA
1 ATTTGA
14612677 GGTTTAGAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.31, C:0.04, G:0.24, T:0.40
Consensus pattern (19 bp):
ATTTGACTAATGGAGTATA
Found at i:14616522 original size:136 final size:135
Alignment explanation
Indices: 14616278--14616549 Score: 535
Period size: 136 Copynumber: 2.0 Consensus size: 135
14616268 TCAGAAATTG
14616278 AACTATGTGAATATAAGAGACTTCGGGAAATAGTCGAGGAGATAATATCAAGGAAATATGATCTA
1 AACTATGTGAATATAAGAGACTTCGGGAAATAGTCGAGGAGATAATATCAAGGAAATATGATCTA
14616343 TAGCATGGTTAAGCTGTACGAGATGGATTAATATGATTAAGAAGATTGATATTTCATACTTGTGA
66 TAGCATGGTTAAGCTGTACGAGATGGATTAATATGATTAAGAAGATTGATATTTCATACTTGTGA
14616408 GATAA
131 GATAA
14616413 NAACTATGTGAATATAAGAGACTTCGGGAAATAGTCGAGGAGATAATATCAAGGAAATATGATCT
1 -AACTATGTGAATATAAGAGACTTCGGGAAATAGTCGAGGAGATAATATCAAGGAAATATGATCT
14616478 ATAGCATGGTTAAGCTGTACGAGATGGATTAATATGATTAAGAAGATTGATATTTCATACTTGTG
65 ATAGCATGGTTAAGCTGTACGAGATGGATTAATATGATTAAGAAGATTGATATTTCATACTTGTG
14616543 AGATAA
130 AGATAA
14616549 A
1 A
14616550 CAGGAAGTAT
Statistics
Matches: 136, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
135 1 0.01
136 135 0.99
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.29
Consensus pattern (135 bp):
AACTATGTGAATATAAGAGACTTCGGGAAATAGTCGAGGAGATAATATCAAGGAAATATGATCTA
TAGCATGGTTAAGCTGTACGAGATGGATTAATATGATTAAGAAGATTGATATTTCATACTTGTGA
GATAA
Found at i:14617026 original size:19 final size:19
Alignment explanation
Indices: 14616981--14617018 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
14616971 CCATTTGACT
*
14616981 TATTGGAGTATGATTTGAG
1 TATTGGAATATGATTTGAG
14617000 TATTGGAATATGATTTGAG
1 TATTGGAATATGATTTGAG
14617019 CTTTGGAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.42
Consensus pattern (19 bp):
TATTGGAATATGATTTGAG
Found at i:14625757 original size:20 final size:20
Alignment explanation
Indices: 14625729--14625766 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
14625719 ACCTAGCTTG
14625729 TTTCCTTG-ATTTCTTCACTT
1 TTTCCTTGAATTT-TTCACTT
*
14625749 TTTCTTTGAATTTTTCAC
1 TTTCCTTGAATTTTTCAC
14625767 CTAGGTTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.13, C:0.21, G:0.05, T:0.61
Consensus pattern (20 bp):
TTTCCTTGAATTTTTCACTT
Found at i:14626152 original size:20 final size:20
Alignment explanation
Indices: 14626129--14626166 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
14626119 CCTTAAATCC
14626129 TACTCCAATAAGTCAAATTA
1 TACTCCAATAAGTCAAATTA
14626149 TACTCCAATAAGTCAAAT
1 TACTCCAATAAGTCAAAT
14626167 GGGGCAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.45, C:0.21, G:0.05, T:0.29
Consensus pattern (20 bp):
TACTCCAATAAGTCAAATTA
Found at i:14633067 original size:20 final size:20
Alignment explanation
Indices: 14633039--14633076 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
14633029 ACCTAGCTTG
14633039 TTTCCTTG-ATTTCTTCACTT
1 TTTCCTTGAATTT-TTCACTT
*
14633059 TTTCTTTGAATTTTTCAC
1 TTTCCTTGAATTTTTCAC
14633077 CTAGGTTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.13, C:0.21, G:0.05, T:0.61
Consensus pattern (20 bp):
TTTCCTTGAATTTTTCACTT
Found at i:14633386 original size:27 final size:28
Alignment explanation
Indices: 14633330--14633385 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
14633320 GAAAAATGTT
14633330 CTGGTGGTGGAAAATTACAATTTTACCC
1 CTGGTGGTGGAAAATTACAATTTTACCC
*
14633358 CTGG-GGTGGCAAAATTACCATTTTACCC
1 CTGGTGGTGG-AAAATTACAATTTTACCC
14633386 TTTTACTTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
27 5 0.19
28 21 0.81
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.30
Consensus pattern (28 bp):
CTGGTGGTGGAAAATTACAATTTTACCC
Found at i:14633457 original size:20 final size:20
Alignment explanation
Indices: 14633432--14633477 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
14633422 CTTCTAAACC
* *
14633432 TCAAATCCTTCTCCAATAAG
1 TCAAATCATACTCCAATAAG
*
14633452 TCAAATTATACTCCAATAAG
1 TCAAATCATACTCCAATAAG
14633472 TCAAAT
1 TCAAAT
14633478 GGGGCCAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.41, C:0.24, G:0.04, T:0.30
Consensus pattern (20 bp):
TCAAATCATACTCCAATAAG
Found at i:14654006 original size:39 final size:39
Alignment explanation
Indices: 14653963--14654171 Score: 175
Period size: 39 Copynumber: 5.4 Consensus size: 39
14653953 GGTGCCAAAG
* * *
14653963 CCATTGATAAAATACTCATGTCATCATCTAGTGTCGTAA
1 CCATTGATAGAATACTCATGTCATCGTCTAGTGCCGTAA
* * * * *
14654002 CCATTGACAGAATACTGATGTCATTGCCTAGTGCCGTAG
1 CCATTGATAGAATACTCATGTCATCGTCTAGTGCCGTAA
* * * ** *
14654041 CCATTGACAGAATACTCATGTCATCATCGAGTGCTATAG
1 CCATTGATAGAATACTCATGTCATCGTCTAGTGCCGTAA
* * * * *
14654080 CCACTGATGGAATACTTATGTCATCGTCTAATGCCATAA
1 CCATTGATAGAATACTCATGTCATCGTCTAGTGCCGTAA
* * * * * * *
14654119 CTAGTAATGGAATACTCATGTCATTGTCTAGTGTCGTAG
1 CCATTGATAGAATACTCATGTCATCGTCTAGTGCCGTAA
*
14654158 CCATTGACAGAATA
1 CCATTGATAGAATA
14654172 ATGAACTATA
Statistics
Matches: 132, Mismatches: 38, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
39 132 1.00
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (39 bp):
CCATTGATAGAATACTCATGTCATCGTCTAGTGCCGTAA
Found at i:14654159 original size:78 final size:78
Alignment explanation
Indices: 14653973--14654171 Score: 202
Period size: 78 Copynumber: 2.6 Consensus size: 78
14653963 CCATTGATAA
* * * * *
14653973 AATACTCATGTCATCATCTAGTGTCGTAACCATTGACAGAATACTGATGTCATTGCCTAGTGCCG
1 AATACTCATGTCATCATCTAGTGTCGTAGCCACTGACAGAATACTGATGTCATCGCCTAATGCCA
* * *
14654038 TAGCCATTGACAG
66 TAACCAGTAACAG
* * ** * *
14654051 AATACTCATGTCATCATCGAGTG-CTATAGCCACTGATGGAATACTTATGTCATCGTCTAATGCC
1 AATACTCATGTCATCATCTAGTGTC-GTAGCCACTGACAGAATACTGATGTCATCGCCTAATGCC
* **
14654115 ATAACTAGTAATGG
65 ATAACCAGTAACAG
** *
14654129 AATACTCATGTCATTGTCTAGTGTCGTAGCCATTGACAGAATA
1 AATACTCATGTCATCATCTAGTGTCGTAGCCACTGACAGAATA
14654172 ATGAACTATA
Statistics
Matches: 95, Mismatches: 24, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
77 1 0.01
78 93 0.98
79 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.31
Consensus pattern (78 bp):
AATACTCATGTCATCATCTAGTGTCGTAGCCACTGACAGAATACTGATGTCATCGCCTAATGCCA
TAACCAGTAACAG
Found at i:14657339 original size:20 final size:20
Alignment explanation
Indices: 14657311--14657359 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 20
14657301 TTATAATTAG
*
14657311 TTTATTTTTAAGTGAGTTAT
1 TTTAATTTTAAGTGAGTTAT
* * * *
14657331 TTTAATTTTATGTTATTTCT
1 TTTAATTTTAAGTGAGTTAT
14657351 TTTAATTTT
1 TTTAATTTT
14657360 GTTATTATTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.22, C:0.02, G:0.08, T:0.67
Consensus pattern (20 bp):
TTTAATTTTAAGTGAGTTAT
Found at i:14657369 original size:21 final size:20
Alignment explanation
Indices: 14657330--14657369 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
14657320 AAGTGAGTTA
*
14657330 TTTTAATTTTATGTTATTTC
1 TTTTAATTTTATATTATTTC
*
14657350 TTTTAATTTTGTTATTATTT
1 TTTTAATTTT-ATATTATTT
14657370 ATTAGTTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.20, C:0.03, G:0.05, T:0.72
Consensus pattern (20 bp):
TTTTAATTTTATATTATTTC
Found at i:14667192 original size:12 final size:13
Alignment explanation
Indices: 14667165--14667196 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
14667155 TATTTCTTGC
*
14667165 TTTTTAATTTATT
1 TTTTTAATCTATT
14667178 TTTTTAATCTATT
1 TTTTTAATCTATT
14667191 TTTTTA
1 TTTTTA
14667197 TGTTCCCTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (13 bp):
TTTTTAATCTATT
Found at i:14667235 original size:10 final size:10
Alignment explanation
Indices: 14667220--14667278 Score: 63
Period size: 9 Copynumber: 6.2 Consensus size: 10
14667210 AGGTCATTGG
14667220 ATTAAAAAAA
1 ATTAAAAAAA
14667230 ATT-AAAAAA
1 ATTAAAAAAA
*
14667239 ATCACAAAAAA
1 ATTA-AAAAAA
14667250 ATT-AAAAAA
1 ATTAAAAAAA
*
14667259 A--GAAAAAA
1 ATTAAAAAAA
14667267 ATTAAAAAAA
1 ATTAAAAAAA
14667277 AT
1 AT
14667279 CAGAGCCTCG
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
8 7 0.17
9 15 0.37
10 11 0.27
11 8 0.20
ACGTcount: A:0.78, C:0.03, G:0.02, T:0.17
Consensus pattern (10 bp):
ATTAAAAAAA
Found at i:14667256 original size:17 final size:17
Alignment explanation
Indices: 14667224--14667276 Score: 70
Period size: 17 Copynumber: 2.9 Consensus size: 17
14667214 CATTGGATTA
14667224 AAAAAAATTAAAAAAATCAC
1 AAAAAAATT-AAAAAA--AC
*
14667244 AAAAAAATTAAAAAAAG
1 AAAAAAATTAAAAAAAC
14667261 AAAAAAATTAAAAAAA
1 AAAAAAATTAAAAAAA
14667277 ATCAGAGCCT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
17 17 0.53
19 6 0.19
20 9 0.28
ACGTcount: A:0.81, C:0.04, G:0.02, T:0.13
Consensus pattern (17 bp):
AAAAAAATTAAAAAAAC
Found at i:14678014 original size:43 final size:44
Alignment explanation
Indices: 14677967--14678070 Score: 131
Period size: 43 Copynumber: 2.4 Consensus size: 44
14677957 AGCTCATGTG
* * *
14677967 CACTCCCTACTCGCACATG-GTTGGGTCATCACTGGTTTATGCA
1 CACTCCCTACTCGCACATGAATTGAGTCATCACTGGCTTATGCA
* * *
14678010 CACTCTCTACTCGCACA-GAATTGAGTCATCATTGGCTTATGCG
1 CACTCCCTACTCGCACATGAATTGAGTCATCACTGGCTTATGCA
*
14678053 CAGTCCCTACTCGCACAT
1 CACTCCCTACTCGCACAT
14678071 AGCCTAGTCA
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
42 1 0.02
43 50 0.98
ACGTcount: A:0.21, C:0.32, G:0.18, T:0.29
Consensus pattern (44 bp):
CACTCCCTACTCGCACATGAATTGAGTCATCACTGGCTTATGCA
Found at i:14682664 original size:42 final size:42
Alignment explanation
Indices: 14682598--14682889 Score: 397
Period size: 42 Copynumber: 7.0 Consensus size: 42
14682588 ATCTCATATA
* * * * * *
14682598 CAACGGCTTATGCGTACTCTCACTCGCATATAGTCGGGTCAG
1 CAACAGCTTATGTGCACTCCCACTCACACATAGTCGGGTCAG
* * *
14682640 CAACAACTTATGTGCACTCCCACTCACACATAGCCGAGTCAG
1 CAACAGCTTATGTGCACTCCCACTCACACATAGTCGGGTCAG
* *
14682682 CAACAGCTTATGTGCACTCCTACTCGCACATAGTCGGGTCAG
1 CAACAGCTTATGTGCACTCCCACTCACACATAGTCGGGTCAG
*
14682724 CAACGGCTTATGTGCACTCCCACTCACACATAG-CTGGGTCAG
1 CAACAGCTTATGTGCACTCCCACTCACACATAGTC-GGGTCAG
* *
14682766 CAACGGCTTATGTGCACTCCCACTCACACATAGTCGGATCAG
1 CAACAGCTTATGTGCACTCCCACTCACACATAGTCGGGTCAG
*
14682808 CAACAGCTTATGTGCACTCCCACTCACACATAGTCGGGTCAA
1 CAACAGCTTATGTGCACTCCCACTCACACATAGTCGGGTCAG
** * *
14682850 CAATGGCTTATGTGCACTCCTACTCGCACATAGTCGGGTC
1 CAACAGCTTATGTGCACTCCCACTCACACATAGTCGGGTC
14682890 CACATCAACA
Statistics
Matches: 223, Mismatches: 25, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
41 1 0.00
42 221 0.99
43 1 0.00
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (42 bp):
CAACAGCTTATGTGCACTCCCACTCACACATAGTCGGGTCAG
Found at i:14682744 original size:84 final size:84
Alignment explanation
Indices: 14682598--14682889 Score: 442
Period size: 84 Copynumber: 3.5 Consensus size: 84
14682588 ATCTCATATA
* * * *
14682598 CAACGGCTTATGCGTACT-CTCACTCGCATATAGTCGGGTCAGCAACAACTTATGTGCACTCCCA
1 CAACGGCTTATGTGCACTCCT-ACTCGCACATAGTCGGGTCAGCAACAGCTTATGTGCACTCCCA
*
14682662 CTCACACATAGCCGAGTCAG
65 CTCACACATAGCCGGGTCAG
* *
14682682 CAACAGCTTATGTGCACTCCTACTCGCACATAGTCGGGTCAGCAACGGCTTATGTGCACTCCCAC
1 CAACGGCTTATGTGCACTCCTACTCGCACATAGTCGGGTCAGCAACAGCTTATGTGCACTCCCAC
*
14682747 TCACACATAGCTGGGTCAG
66 TCACACATAGCCGGGTCAG
* * *
14682766 CAACGGCTTATGTGCACTCCCACTCACACATAGTCGGATCAGCAACAGCTTATGTGCACTCCCAC
1 CAACGGCTTATGTGCACTCCTACTCGCACATAGTCGGGTCAGCAACAGCTTATGTGCACTCCCAC
* *
14682831 TCACACATAGTCGGGTCAA
66 TCACACATAGCCGGGTCAG
*
14682850 CAATGGCTTATGTGCACTCCTACTCGCACATAGTCGGGTC
1 CAACGGCTTATGTGCACTCCTACTCGCACATAGTCGGGTC
14682890 CACATCAACA
Statistics
Matches: 187, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
84 185 0.99
85 2 0.01
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (84 bp):
CAACGGCTTATGTGCACTCCTACTCGCACATAGTCGGGTCAGCAACAGCTTATGTGCACTCCCAC
TCACACATAGCCGGGTCAG
Found at i:14682823 original size:126 final size:126
Alignment explanation
Indices: 14682597--14682889 Score: 437
Period size: 126 Copynumber: 2.3 Consensus size: 126
14682587 CATCTCATAT
* * * *
14682597 ACAACGGCTTATGCGTACTCTCACTCGCATATAGTCGGGTCAGCAACAACTTATGTGCACTCCCA
1 ACAACGGCTTATGTGCACTCCCACTCGCACATAGTCGGGTCAGCAACAACTTATGTGCACTCCCA
* *
14682662 CTCACACATAGCCGAGTCAGCAACAGCTTATGTGCACTCCTACTCGCACATAGTCGGGTCA
66 CTCACACATAGCCGAGTCAGCAACAGCTTATGTGCACTCCCACTCACACATAGTCGGGTCA
* * **
14682723 GCAACGGCTTATGTGCACTCCCACTCACACATAG-CTGGGTCAGCAACGGCTTATGTGCACTCCC
1 ACAACGGCTTATGTGCACTCCCACTCGCACATAGTC-GGGTCAGCAACAACTTATGTGCACTCCC
*
14682787 ACTCACACATAGTCG-GATCAGCAACAGCTTATGTGCACTCCCACTCACACATAGTCGGGTCA
65 ACTCACACATAGCCGAG-TCAGCAACAGCTTATGTGCACTCCCACTCACACATAGTCGGGTCA
* *
14682849 ACAATGGCTTATGTGCACTCCTACTCGCACATAGTCGGGTC
1 ACAACGGCTTATGTGCACTCCCACTCGCACATAGTCGGGTC
14682890 CACATCAACA
Statistics
Matches: 149, Mismatches: 15, Indels: 6
0.88 0.09 0.04
Matches are distributed among these distances:
125 2 0.01
126 146 0.98
127 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (126 bp):
ACAACGGCTTATGTGCACTCCCACTCGCACATAGTCGGGTCAGCAACAACTTATGTGCACTCCCA
CTCACACATAGCCGAGTCAGCAACAGCTTATGTGCACTCCCACTCACACATAGTCGGGTCA
Found at i:14691036 original size:2 final size:2
Alignment explanation
Indices: 14691025--14691054 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
14691015 CACATATTAC
*
14691025 TA TA TG TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14691055 CCCATCATCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:14696824 original size:23 final size:23
Alignment explanation
Indices: 14696798--14696857 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 23
14696788 TATGCGTATA
* * *
14696798 CCCATCATTATCATGCACATCAT
1 CCCATCATCATCATACACACCAT
14696821 CCCATCATCATCATACACACCAT
1 CCCATCATCATCATACACACCAT
**
14696844 GACATCATCATCAT
1 CCCATCATCATCAT
14696858 CATCAGCTCA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.33, C:0.37, G:0.03, T:0.27
Consensus pattern (23 bp):
CCCATCATCATCATACACACCAT
Found at i:14696901 original size:43 final size:43
Alignment explanation
Indices: 14696854--14696985 Score: 147
Period size: 43 Copynumber: 3.1 Consensus size: 43
14696844 GACATCATCA
* * * ** *
14696854 TCATCATCAGCTCATGCGCACTCCCTACTCGCACATGGCTGGG
1 TCATCATCGGCTTATGCACACTCCCTACTCGCACATAACCGGG
* * * *
14696897 TCATCACCGGGTTATGCACACTCCCTACTCTCATATAACCGGG
1 TCATCATCGGCTTATGCACACTCCCTACTCGCACATAACCGGG
* * *
14696940 TCATCCTCGGCTTATGCACACTCCCTACTCGCACATAGCCGAG
1 TCATCATCGGCTTATGCACACTCCCTACTCGCACATAACCGGG
14696983 TCA
1 TCA
14696986 ATATAATTAC
Statistics
Matches: 72, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
43 72 1.00
ACGTcount: A:0.21, C:0.37, G:0.17, T:0.24
Consensus pattern (43 bp):
TCATCATCGGCTTATGCACACTCCCTACTCGCACATAACCGGG
Found at i:14700543 original size:2 final size:2
Alignment explanation
Indices: 14700528--14700580 Score: 88
Period size: 2 Copynumber: 26.0 Consensus size: 2
14700518 CAAACATCTC
*
14700528 TA TA TA GTA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14700571 TA TA TA TA TA
1 TA TA TA TA TA
14700581 AATACATACA
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
2 46 0.96
3 2 0.04
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (2 bp):
TA
Found at i:14700668 original size:54 final size:54
Alignment explanation
Indices: 14700588--14700720 Score: 203
Period size: 54 Copynumber: 2.4 Consensus size: 54
14700578 ATAAATACAT
*
14700588 ACACCACCATCTCGCCCAGCTCATGTGCATCCCCCCACATCGTGCACATAGCCGG
1 ACACCA-CATCTCACCCAGCTCATGTGCATCCCCCCACATCGTGCACATAGCCGG
* * * *
14700643 ACACCTCGTCTCACCCAGCTTATGTGCATCCCCCCACATCGTGCACATAGCTGG
1 ACACCACATCTCACCCAGCTCATGTGCATCCCCCCACATCGTGCACATAGCCGG
*
14700697 ACACCACATCTCACCCAACTCATG
1 ACACCACATCTCACCCAGCTCATG
14700721 CACGGTTACA
Statistics
Matches: 69, Mismatches: 9, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
54 64 0.93
55 5 0.07
ACGTcount: A:0.23, C:0.44, G:0.14, T:0.19
Consensus pattern (54 bp):
ACACCACATCTCACCCAGCTCATGTGCATCCCCCCACATCGTGCACATAGCCGG
Found at i:14703606 original size:60 final size:60
Alignment explanation
Indices: 14703525--14703687 Score: 177
Period size: 60 Copynumber: 2.7 Consensus size: 60
14703515 ATAGGAAACA
* * *
14703525 AAACAGAAAGTTTTTCTCTGCAGCGAGATTGAATCTTGCTGCAACAAAATTGTG-ACCCAG
1 AAACAGAAAGTTTCTCGCTGCAGCGAGAATGAATCTTGCTGCAACAAAATT-TGAACCCAG
* * * * * *
14703585 AAACAGAATGTTTCTCGCTGCAGCGAGAATCATTCTTGCTGCAGCGAAATTTGAACCTAG
1 AAACAGAAAGTTTCTCGCTGCAGCGAGAATGAATCTTGCTGCAACAAAATTTGAACCCAG
* * * *
14703645 AAATAGAAAATTTCTCGTTGCAGTGAGAATGAAT-TTCGCTGCA
1 AAACAGAAAGTTTCTCGCTGCAGCGAGAATGAATCTT-GCTGCA
14703688 GCAAGAAACT
Statistics
Matches: 85, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
59 4 0.05
60 81 0.95
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.28
Consensus pattern (60 bp):
AAACAGAAAGTTTCTCGCTGCAGCGAGAATGAATCTTGCTGCAACAAAATTTGAACCCAG
Found at i:14711917 original size:43 final size:43
Alignment explanation
Indices: 14711843--14711961 Score: 141
Period size: 43 Copynumber: 2.8 Consensus size: 43
14711833 TCACCAGCTC
** * **
14711843 ATGCGCACTCCCTACTCGCACATGGCTGGGTCA-TCACCGGGTT
1 ATGCGCACTCCCTACTCGCACATAACCGGGTCATTC-CCGACTT
* *
14711886 ATGCTCACTCCCTACTCGCACATAACCGGGTCATTCTCGACTT
1 ATGCGCACTCCCTACTCGCACATAACCGGGTCATTCCCGACTT
* *
14711929 ATGCGCACTCCCTACTTGCACATAACCGAGTCA
1 ATGCGCACTCCCTACTCGCACATAACCGGGTCA
14711962 ATATAATTAC
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
43 63 0.97
44 2 0.03
ACGTcount: A:0.21, C:0.36, G:0.18, T:0.24
Consensus pattern (43 bp):
ATGCGCACTCCCTACTCGCACATAACCGGGTCATTCCCGACTT
Found at i:14713699 original size:12 final size:12
Alignment explanation
Indices: 14713682--14713714 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
14713672 CACTTCATTC
14713682 TTTTTCTTTCTT
1 TTTTTCTTTCTT
14713694 TTTTTCTTTCTT
1 TTTTTCTTTCTT
14713706 TTTTTCTTT
1 TTTTTCTTT
14713715 TTCGTCAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTTTCTTTCTT
Found at i:14720408 original size:32 final size:32
Alignment explanation
Indices: 14720372--14720520 Score: 129
Period size: 35 Copynumber: 4.5 Consensus size: 32
14720362 TTTACCGGGA
*
14720372 TCAACTAAAACCCAAAGTGGTTTTTCAAAGGC
1 TCAACCAAAACCCAAAGTGGTTTTTCAAAGGC
* **
14720404 TCAACCACAACCTTTCACAA-TGGTTTTTCATGGGC
1 TCAACCAAAACC---CA-AAGTGGTTTTTCAAAGGC
*
14720439 TCAACCAAAACCCAAAGTAGTTTTTCAAAGGC
1 TCAACCAAAACCCAAAGTGGTTTTTCAAAGGC
* * * ** *
14720471 TCAACCACAACCTATAACAATGGTTTTTCACGGGA
1 TCAACCAAAACC--CAA-AGTGGTTTTTCAAAGGC
14720506 TCAACCAAAACCCAA
1 TCAACCAAAACCCAA
14720521 CAACTAACTT
Statistics
Matches: 92, Mismatches: 17, Indels: 15
0.74 0.14 0.12
Matches are distributed among these distances:
31 2 0.02
32 35 0.38
33 2 0.02
34 2 0.02
35 49 0.53
36 2 0.02
ACGTcount: A:0.36, C:0.27, G:0.13, T:0.24
Consensus pattern (32 bp):
TCAACCAAAACCCAAAGTGGTTTTTCAAAGGC
Found at i:14720428 original size:35 final size:34
Alignment explanation
Indices: 14720389--14720500 Score: 131
Period size: 35 Copynumber: 3.3 Consensus size: 34
14720379 AAACCCAAAG
14720389 TGGTTTTTCAAAGGCTCAACCACAACCTTTCACAA
1 TGGTTTTTCAAAGGCTCAACCACAACC-TTCACAA
** *
14720424 TGGTTTTTCATGGGCTCAACCAAAACC--CA-AA
1 TGGTTTTTCAAAGGCTCAACCACAACCTTCACAA
* *
14720455 GTAGTTTTTCAAAGGCTCAACCACAACCTATAACAA
1 -TGGTTTTTCAAAGGCTCAACCACAACCT-TCACAA
14720491 TGGTTTTTCA
1 TGGTTTTTCA
14720501 CGGGATCAAC
Statistics
Matches: 63, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
31 2 0.03
32 25 0.40
35 34 0.54
36 2 0.03
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.29
Consensus pattern (34 bp):
TGGTTTTTCAAAGGCTCAACCACAACCTTCACAA
Found at i:14720453 original size:67 final size:67
Alignment explanation
Indices: 14720345--14720520 Score: 273
Period size: 67 Copynumber: 2.6 Consensus size: 67
14720335 GTTTAGCCAA
* * *
14720345 AACCTTTCACAATAGTTTTT-ACCGGGATCAACTAAAACCCAAAGTGGTTTTTCAAAGGCTCAAC
1 AACCTTTCACAATGGTTTTTCA-CGGGATCAACCAAAACCCAAAGTAGTTTTTCAAAGGCTCAAC
14720409 CAC
65 CAC
* *
14720412 AACCTTTCACAATGGTTTTTCATGGGCTCAACCAAAACCCAAAGTAGTTTTTCAAAGGCTCAACC
1 AACCTTTCACAATGGTTTTTCACGGGATCAACCAAAACCCAAAGTAGTTTTTCAAAGGCTCAACC
14720477 AC
66 AC
* *
14720479 AACCTATAACAATGGTTTTTCACGGGATCAACCAAAACCCAA
1 AACCTTTCACAATGGTTTTTCACGGGATCAACCAAAACCCAA
14720521 CAACTAACTT
Statistics
Matches: 99, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
67 98 0.99
68 1 0.01
ACGTcount: A:0.35, C:0.26, G:0.13, T:0.26
Consensus pattern (67 bp):
AACCTTTCACAATGGTTTTTCACGGGATCAACCAAAACCCAAAGTAGTTTTTCAAAGGCTCAACC
AC
Found at i:14725525 original size:37 final size:37
Alignment explanation
Indices: 14725482--14725590 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
14725472 TTCATCGTCA
14725482 TGTGCACTCCCTACTCGCACACTTCAACATCATCATG
1 TGTGCACTCCCTACTCGCACACTTCAACATCATCATG
* * * *
14725519 TGTGCACTCCCTACTTGTATACTTTAACATCATCATG
1 TGTGCACTCCCTACTCGCACACTTCAACATCATCATG
14725556 TGTGCACTCCCTACTCGCACACTTCAACATCATCA
1 TGTGCACTCCCTACTCGCACACTTCAACATCATCA
14725591 CACAACATTA
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.25, C:0.35, G:0.10, T:0.30
Consensus pattern (37 bp):
TGTGCACTCCCTACTCGCACACTTCAACATCATCATG
Found at i:14732905 original size:32 final size:32
Alignment explanation
Indices: 14732869--14733017 Score: 131
Period size: 35 Copynumber: 4.5 Consensus size: 32
14732859 TTTACCAGGA
*
14732869 TCAACTAAAACCCAAAGTGGTTTTTCAAAGGC
1 TCAACCAAAACCCAAAGTGGTTTTTCAAAGGC
* *
14732901 TCAACCACAACCTTTCACAA-TGGTTTTTCACAA-GA
1 TCAACCAAAACC---CA-AAGTGGTTTTTCA-AAGGC
14732936 TCAACCAAAACCCAAAGTGGTTTTTCAAAGGC
1 TCAACCAAAACCCAAAGTGGTTTTTCAAAGGC
* * * ** *
14732968 TCAGCCACAACCTACAACAATGGTTTTTCACGGGA
1 TCAACCAAAACC--CAA-AGTGGTTTTTCAAAGGC
14733003 TCAACCAAAACCCAA
1 TCAACCAAAACCCAA
14733018 CAACTAACTT
Statistics
Matches: 94, Mismatches: 13, Indels: 19
0.75 0.10 0.15
Matches are distributed among these distances:
31 4 0.04
32 33 0.35
33 3 0.03
34 3 0.03
35 47 0.50
36 4 0.04
ACGTcount: A:0.37, C:0.28, G:0.13, T:0.23
Consensus pattern (32 bp):
TCAACCAAAACCCAAAGTGGTTTTTCAAAGGC
Found at i:14732950 original size:67 final size:67
Alignment explanation
Indices: 14732842--14733017 Score: 266
Period size: 67 Copynumber: 2.6 Consensus size: 67
14732832 GTTTAGCCAA
* *
14732842 AACCTTTCACAATAGTTTTT-ACCAGGATCAACTAAAACCCAAAGTGGTTTTTCAAAGGCTCAAC
1 AACCTTTCACAATGGTTTTTCA-CAGGATCAACCAAAACCCAAAGTGGTTTTTCAAAGGCTCAAC
14732906 CAC
65 CAC
* *
14732909 AACCTTTCACAATGGTTTTTCACAAGATCAACCAAAACCCAAAGTGGTTTTTCAAAGGCTCAGCC
1 AACCTTTCACAATGGTTTTTCACAGGATCAACCAAAACCCAAAGTGGTTTTTCAAAGGCTCAACC
14732974 AC
66 AC
* *
14732976 AACC-TACAACAATGGTTTTTCACGGGATCAACCAAAACCCAA
1 AACCTTTC-ACAATGGTTTTTCACAGGATCAACCAAAACCCAA
14733018 CAACTAACTT
Statistics
Matches: 100, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
66 2 0.02
67 97 0.97
68 1 0.01
ACGTcount: A:0.36, C:0.27, G:0.12, T:0.24
Consensus pattern (67 bp):
AACCTTTCACAATGGTTTTTCACAGGATCAACCAAAACCCAAAGTGGTTTTTCAAAGGCTCAACC
AC
Found at i:14735155 original size:20 final size:21
Alignment explanation
Indices: 14735119--14735158 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
14735109 AAAAACTAAT
*
14735119 AAATAACAATCAAATTAAAAG
1 AAATAACAATAAAATTAAAAG
14735140 AAATAAC-ATAAAATTAAAA
1 AAATAACAATAAAATTAAAA
14735159 TAACTCACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.70, C:0.07, G:0.03, T:0.20
Consensus pattern (21 bp):
AAATAACAATAAAATTAAAAG
Found at i:14735634 original size:14 final size:13
Alignment explanation
Indices: 14735614--14735650 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 13
14735604 TTTAGTTGAA
14735614 ATTTTAGTTAATT
1 ATTTTAGTTAATT
14735627 AGTTTTAGTTAATT
1 A-TTTTAGTTAATT
*
14735641 AATTTAGTTA
1 ATTTTAGTTA
14735651 TTTGAATTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 9 0.41
14 13 0.59
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (13 bp):
ATTTTAGTTAATT
Found at i:14739270 original size:43 final size:43
Alignment explanation
Indices: 14739200--14739331 Score: 142
Period size: 43 Copynumber: 3.1 Consensus size: 43
14739190 GTAATTATAT
* * *
14739200 TGACTCGGCTATGTGCAAGCAGGGAGTGCGCATAAACC-GAG-GA
1 TGACCCGGCTATGTGCGAGTAGGGAGTGCGCAT-AACCTG-GTGA
* *
14739243 TGACCCGGTTATGTGCGAGTAGGGAGTGTGCATAACCTGGTGA
1 TGACCCGGCTATGTGCGAGTAGGGAGTGCGCATAACCTGGTGA
** * * *
14739286 TGACCTAGCCATGTGCGAGTAGGGAGTGCGCATGAGCTGGTGA
1 TGACCCGGCTATGTGCGAGTAGGGAGTGCGCATAACCTGGTGA
14739329 TGA
1 TGA
14739332 TGATGATGGG
Statistics
Matches: 75, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
42 5 0.07
43 70 0.93
ACGTcount: A:0.23, C:0.18, G:0.37, T:0.21
Consensus pattern (43 bp):
TGACCCGGCTATGTGCGAGTAGGGAGTGCGCATAACCTGGTGA
Found at i:14741032 original size:7 final size:7
Alignment explanation
Indices: 14741022--14741046 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
14741012 TGTTTGATGT
14741022 TGTGAAA
1 TGTGAAA
14741029 TGTGAAA
1 TGTGAAA
14741036 TGTGAAA
1 TGTGAAA
14741043 TGTG
1 TGTG
14741047 TAAAAGGATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.36, C:0.00, G:0.32, T:0.32
Consensus pattern (7 bp):
TGTGAAA
Found at i:14741089 original size:2 final size:2
Alignment explanation
Indices: 14741082--14741122 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
14741072 GTATGATGTT
14741082 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14741123 NNNNNNNNNN
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:14744086 original size:2 final size:2
Alignment explanation
Indices: 14744081--14744107 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
14744071 TCTATACATG
14744081 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
14744108 TCACCATCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14744222 original size:42 final size:43
Alignment explanation
Indices: 14744132--14744230 Score: 112
Period size: 42 Copynumber: 2.3 Consensus size: 43
14744122 ACTCTCCCAT
* * * *
14744132 CATCATCAGCTCATGTGCACTCCCCACTAGCACATGGCTGGGA
1 CATCATCGGCTTATGTGCACTCCCCACTAGCACATAGCCGGGA
* * *
14744175 CATCATTGGCTTATGTGCACT-CCCATTCA-CACATAGCCGGGT
1 CATCATCGGCTTATGTGCACTCCCCACT-AGCACATAGCCGGGA
14744217 CATCATCGGCTTAT
1 CATCATCGGCTTAT
14744231 ATACACTCTT
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
42 28 0.60
43 19 0.40
ACGTcount: A:0.22, C:0.32, G:0.19, T:0.26
Consensus pattern (43 bp):
CATCATCGGCTTATGTGCACTCCCCACTAGCACATAGCCGGGA
Found at i:14753927 original size:24 final size:24
Alignment explanation
Indices: 14753900--14753949 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
14753890 CCAAAACCAT
14753900 GGATTATGCCAATAAGACAAGTAG
1 GGATTATGCCAATAAGACAAGTAG
14753924 GGATTATGCCAATAAGACAAGTAG
1 GGATTATGCCAATAAGACAAGTAG
14753948 GG
1 GG
14753950 GTGAGCGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.40, C:0.12, G:0.28, T:0.20
Consensus pattern (24 bp):
GGATTATGCCAATAAGACAAGTAG
Found at i:14754328 original size:12 final size:11
Alignment explanation
Indices: 14754297--14754338 Score: 59
Period size: 11 Copynumber: 3.8 Consensus size: 11
14754287 TAACCATACA
14754297 AAAATTAATGT
1 AAAATTAATGT
14754308 AAAATTAATGT
1 AAAATTAATGT
14754319 AAAATATAATG-
1 AAAAT-TAATGT
*
14754330 AAAACTAAT
1 AAAATTAAT
14754339 ACCCCAAGCT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
10 4 0.14
11 20 0.69
12 5 0.17
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (11 bp):
AAAATTAATGT
Found at i:14754388 original size:16 final size:16
Alignment explanation
Indices: 14754369--14754399 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14754359 ATATAACTTA
14754369 TTATATTAACTTATTT
1 TTATATTAACTTATTT
*
14754385 TTATATTAAGTTATT
1 TTATATTAACTTATT
14754400 AATATATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.61
Consensus pattern (16 bp):
TTATATTAACTTATTT
Found at i:14754405 original size:16 final size:16
Alignment explanation
Indices: 14754370--14754408 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
14754360 TATAACTTAT
**
14754370 TATATTAACTTATTTT
1 TATATTAACTTATTAA
*
14754386 TATATTAAGTTATTAA
1 TATATTAACTTATTAA
14754402 TATATTA
1 TATATTA
14754409 TACTATATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (16 bp):
TATATTAACTTATTAA
Found at i:14754690 original size:18 final size:19
Alignment explanation
Indices: 14754662--14754697 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
14754652 ATATAACTAA
*
14754662 AGTAACTTATATTAATATT
1 AGTAACTTATAGTAATATT
14754681 AGTAAC-TATAGTAATAT
1 AGTAACTTATAGTAATAT
14754698 AACTTATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.44, C:0.06, G:0.08, T:0.42
Consensus pattern (19 bp):
AGTAACTTATAGTAATATT
Found at i:14754713 original size:18 final size:18
Alignment explanation
Indices: 14754644--14754733 Score: 54
Period size: 18 Copynumber: 5.3 Consensus size: 18
14754634 GTTATTATAG
14754644 TATAACTTATA-TAACTAA
1 TATAACTTATATTAA-TAA
*
14754662 -AGTAACTTATATTAATAT
1 TA-TAACTTATATTAATAA
*
14754680 TAGTAAC---TA-TAGTAA
1 TA-TAACTTATATTAATAA
14754695 TATAACTTATATTAATAA
1 TATAACTTATATTAATAA
* *
14754713 T-TAGC-TATATT-ACAA
1 TATAACTTATATTAATAA
14754728 TATAAC
1 TATAAC
14754734 AATATATTTT
Statistics
Matches: 57, Mismatches: 7, Indels: 18
0.70 0.09 0.22
Matches are distributed among these distances:
14 4 0.07
15 10 0.18
16 11 0.19
17 6 0.11
18 17 0.30
19 9 0.16
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.40
Consensus pattern (18 bp):
TATAACTTATATTAATAA
Found at i:14754817 original size:29 final size:28
Alignment explanation
Indices: 14754762--14754817 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 28
14754752 TATAGTGTAC
*
14754762 TTATTAATATACTAATTAGTCAATATATA
1 TTATTAATATACAAATTAGTC-ATATATA
14754791 TTATTAATATACAATATATAGTC-TATA
1 TTATTAATATACAA-AT-TAGTCATATA
14754818 CTCTATAAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
29 17 0.71
30 2 0.08
31 5 0.21
ACGTcount: A:0.45, C:0.07, G:0.04, T:0.45
Consensus pattern (28 bp):
TTATTAATATACAAATTAGTCATATATA
Found at i:14756788 original size:34 final size:35
Alignment explanation
Indices: 14756743--14756811 Score: 95
Period size: 34 Copynumber: 2.0 Consensus size: 35
14756733 TTCACCAAGC
*
14756743 TTTACAATAGCTTTTCA-AGGCTCAGCCAAAACCT
1 TTTACAATAGCTTTTCACAGGCTCAACCAAAACCT
* * *
14756777 TTTACACTAGCTTTTCACGGGCTCAACTAAAACCT
1 TTTACAATAGCTTTTCACAGGCTCAACCAAAACCT
14756812 AAAGTGGTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
34 16 0.53
35 14 0.47
ACGTcount: A:0.30, C:0.28, G:0.12, T:0.30
Consensus pattern (35 bp):
TTTACAATAGCTTTTCACAGGCTCAACCAAAACCT
Found at i:14770887 original size:181 final size:180
Alignment explanation
Indices: 14770582--14770943 Score: 706
Period size: 181 Copynumber: 2.0 Consensus size: 180
14770572 CCTTAGTCAA
14770582 TGCATCTACTTTTCTTTACATAATATTCAACAAAACCAAAATTGAGCATCACACACATAAATTAA
1 TGCATCTACTTTTCTTTACATAATATTCAACAAAACCAAAATTGAGCATCACACACATAAATTAA
14770647 ACATGAAGACCTATTTAACTCTATTTGATTTAGTCTTCCTTCTCTCCTTTTTCTTTTTCATCATT
66 ACATGAAGACCTATTTAACTCTATTTGATTTAGTCTTCCTTCTCTCCTTTTTCTTTTTCATCATT
14770712 AAACAAGATATTCAAAACTCCCCCTTAATGAGTGCATCAAGATTTTCCTT
131 AAACAAGATATTCAAAACTCCCCCTTAATGAGTGCATCAAGATTTTCCTT
14770762 TNGCATCTACTTTTCTTTACATAATATTCAACAAAACCAAAATTGAGCATCACACACATAAATTA
1 T-GCATCTACTTTTCTTTACATAATATTCAACAAAACCAAAATTGAGCATCACACACATAAATTA
*
14770827 AACATGAAGACCTATTTAACTCTATTTGATTTAGTCTTCCTTCTCTCTTTTTTCTTTTTCATCAT
65 AACATGAAGACCTATTTAACTCTATTTGATTTAGTCTTCCTTCTCTCCTTTTTCTTTTTCATCAT
14770892 TAAACAAGATATTCAAAACTCCCCCTTAATGAGTGCATCAAGATTTTCCTT
130 TAAACAAGATATTCAAAACTCCCCCTTAATGAGTGCATCAAGATTTTCCTT
14770943 T
1 T
14770944 AATCTTTAAA
Statistics
Matches: 180, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
180 1 0.01
181 179 0.99
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.38
Consensus pattern (180 bp):
TGCATCTACTTTTCTTTACATAATATTCAACAAAACCAAAATTGAGCATCACACACATAAATTAA
ACATGAAGACCTATTTAACTCTATTTGATTTAGTCTTCCTTCTCTCCTTTTTCTTTTTCATCATT
AAACAAGATATTCAAAACTCCCCCTTAATGAGTGCATCAAGATTTTCCTT
Found at i:14773150 original size:37 final size:37
Alignment explanation
Indices: 14773103--14773221 Score: 186
Period size: 37 Copynumber: 3.2 Consensus size: 37
14773093 AATGCAATAT
* *
14773103 CATCATCATGTGTGCACTCCCTCCTCGCACACTTCAA
1 CATCATCATGTGTGCACTCCTTACTCGCACACTTCAA
*
14773140 CATCATCATGTGTGCACTCCTTACTCGCACAC-TCTAT
1 CATCATCATGTGTGCACTCCTTACTCGCACACTTC-AA
*
14773177 CATCATCATGTGTGCACTCCTTACTCGCACACTTTAA
1 CATCATCATGTGTGCACTCCTTACTCGCACACTTCAA
14773214 CATCATCA
1 CATCATCA
14773222 CACAACATTA
Statistics
Matches: 75, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
36 2 0.03
37 72 0.96
38 1 0.01
ACGTcount: A:0.24, C:0.36, G:0.10, T:0.30
Consensus pattern (37 bp):
CATCATCATGTGTGCACTCCTTACTCGCACACTTCAA
Found at i:14779724 original size:19 final size:19
Alignment explanation
Indices: 14779681--14779726 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
14779671 AGAATTTTGG
** *
14779681 AATAAAATAATATTTTATT
1 AATAAAATAATATTAAAAT
14779700 AATAAAATAATATTAAAAT
1 AATAAAATAATATTAAAAT
*
14779719 ATTAAAAT
1 AATAAAAT
14779727 TTTATCTAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
AATAAAATAATATTAAAAT
Found at i:14788169 original size:11 final size:12
Alignment explanation
Indices: 14788142--14788174 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
14788132 CCTAGGTTTT
*
14788142 CTTTGTTTTTCC
1 CTTTGTTCTTCC
14788154 CTTTGTTCTT-C
1 CTTTGTTCTTCC
14788165 CTTTGTTCTT
1 CTTTGTTCTT
14788175 GTTTCTGGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 11 0.55
12 9 0.45
ACGTcount: A:0.00, C:0.24, G:0.09, T:0.67
Consensus pattern (12 bp):
CTTTGTTCTTCC
Found at i:14792682 original size:17 final size:19
Alignment explanation
Indices: 14792662--14792696 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
14792652 AGAATTCCGG
14792662 AATAATA-G-TCAAGATGA
1 AATAATATGATCAAGATGA
14792679 AATAATATGATCAAGATG
1 AATAATATGATCAAGATG
14792697 TAAAAGTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 1 0.06
19 8 0.50
ACGTcount: A:0.51, C:0.06, G:0.17, T:0.26
Consensus pattern (19 bp):
AATAATATGATCAAGATGA
Found at i:14798940 original size:20 final size:21
Alignment explanation
Indices: 14798917--14798959 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
14798907 TAGATGTTGA
*
14798917 TTAGTTTAA-TTTAAGTTATT
1 TTAGTTCAATTTTAAGTTATT
*
14798937 TTAGTTCAATTTTATGTTATT
1 TTAGTTCAATTTTAAGTTATT
14798958 TT
1 TT
14798960 TAATTTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.26, C:0.02, G:0.09, T:0.63
Consensus pattern (21 bp):
TTAGTTCAATTTTAAGTTATT
Found at i:14802680 original size:21 final size:21
Alignment explanation
Indices: 14802649--14802716 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
14802639 GGATATGTTC
* *
14802649 ATGCAGTTCATGGCAAATACTG
1 ATGCA-TTCATGACAAAGACTG
* *
14802671 ATGCATTCATAACAAAGACCG
1 ATGCATTCATGACAAAGACTG
* *
14802692 ATGCATTTATGACAAGGACTG
1 ATGCATTCATGACAAAGACTG
14802713 ATGC
1 ATGC
14802717 TTCCATTTAA
Statistics
Matches: 38, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
21 33 0.87
22 5 0.13
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (21 bp):
ATGCATTCATGACAAAGACTG
Found at i:14804183 original size:9 final size:10
Alignment explanation
Indices: 14804167--14804244 Score: 54
Period size: 11 Copynumber: 7.4 Consensus size: 10
14804157 TGTAAAAATC
14804167 ATTTCAAAAA
1 ATTTCAAAAA
14804177 A-TTCAAAAAA
1 ATTTC-AAAAA
14804187 ATTTCAAAAAAAA
1 ATTTC---AAAAA
14804200 ATTT-AAAAA
1 ATTTCAAAAA
* *
14804209 A-ATAAACAAA
1 ATTTCAA-AAA
14804219 ATTTCACAAAA
1 ATTTCA-AAAA
14804230 ATTTCACAAAA
1 ATTTCA-AAAA
14804241 ATTT
1 ATTT
14804245 TTTTTAAAAA
Statistics
Matches: 57, Mismatches: 3, Indels: 15
0.76 0.04 0.20
Matches are distributed among these distances:
8 1 0.02
9 11 0.19
10 11 0.19
11 23 0.40
12 1 0.02
13 10 0.18
ACGTcount: A:0.63, C:0.10, G:0.00, T:0.27
Consensus pattern (10 bp):
ATTTCAAAAA
Found at i:14804197 original size:13 final size:12
Alignment explanation
Indices: 14804181--14804210 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
14804171 CAAAAAATTC
14804181 AAAAAAATTTCAA
1 AAAAAAATTT-AA
14804194 AAAAAAATTTAA
1 AAAAAAATTTAA
14804206 AAAAA
1 AAAAA
14804211 TAAACAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.41
13 10 0.59
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (12 bp):
AAAAAAATTTAA
Found at i:14804208 original size:32 final size:33
Alignment explanation
Indices: 14804167--14804242 Score: 88
Period size: 32 Copynumber: 2.4 Consensus size: 33
14804157 TGTAAAAATC
*
14804167 ATTTCAAAAAATTCAAA-AAAATTTCAAAAAAAA
1 ATTTCAAAAAAAT-AAACAAAATTTCAAAAAAAA
*
14804200 ATTT-AAAAAAATAAACAAAATTTC--ACAAAA
1 ATTTCAAAAAAATAAACAAAATTTCAAAAAAAA
*
14804230 ATTTCACAAAAAT
1 ATTTCAAAAAAAT
14804243 TTTTTTTAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
30 9 0.24
31 10 0.26
32 15 0.39
33 4 0.11
ACGTcount: A:0.64, C:0.11, G:0.00, T:0.25
Consensus pattern (33 bp):
ATTTCAAAAAAATAAACAAAATTTCAAAAAAAA
Found at i:14804230 original size:11 final size:11
Alignment explanation
Indices: 14804216--14804244 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
14804206 AAAAATAAAC
14804216 AAAATTTCACA
1 AAAATTTCACA
14804227 AAAATTTCACA
1 AAAATTTCACA
14804238 AAAATTT
1 AAAATTT
14804245 TTTTTAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (11 bp):
AAAATTTCACA
Found at i:14806014 original size:28 final size:29
Alignment explanation
Indices: 14805973--14806032 Score: 68
Period size: 30 Copynumber: 2.1 Consensus size: 29
14805963 TTCTATGGGC
*
14805973 AATTTTTCAATTTT-TGGGGCAAAAATGT
1 AATTTTTCAATTTTAGGGGGCAAAAATGT
* * *
14806001 AATTTTTTACTTTTACGGGGGCAAAAGTGT
1 AATTTTTCAATTTTA-GGGGGCAAAAATGT
14806031 AA
1 AA
14806033 ATTTCAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 12 0.46
30 14 0.54
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (29 bp):
AATTTTTCAATTTTAGGGGGCAAAAATGT
Found at i:14817038 original size:22 final size:23
Alignment explanation
Indices: 14817007--14817053 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
14816997 ATATAGAGTT
14817007 ATTTAAGCTTAATT-TTAATAGTA
1 ATTTAAGCTTAATTCTT-ATAGTA
*
14817030 ATTT-AGCTTAGTTCTTATAGTA
1 ATTTAAGCTTAATTCTTATAGTA
14817052 AT
1 AT
14817054 GCATAGAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 16 0.73
23 6 0.27
ACGTcount: A:0.34, C:0.06, G:0.11, T:0.49
Consensus pattern (23 bp):
ATTTAAGCTTAATTCTTATAGTA
Found at i:14820179 original size:32 final size:32
Alignment explanation
Indices: 14820019--14820168 Score: 153
Period size: 32 Copynumber: 4.5 Consensus size: 32
14820009 GAAAGCCTCC
*
14820019 TCCCTACATTCT-GCTTAATTATATC-AGAAGCG
1 TCCCTACATT-TAGCTTACTTATATCAAG-AGCG
* * * *
14820051 TCCCTACATTCAGCTTACATATAGT-AGGAGTGCTTCC
1 TCCCTACATTTAGCTTACTTATA-TCA--AGAG---CG
14820088 TCCCTACATTTAGCTTACTTATATCAAGAGCG
1 TCCCTACATTTAGCTTACTTATATCAAGAGCG
*
14820120 TCCCTACATTCAGCTTACTTATATCAAGAGCG
1 TCCCTACATTTAGCTTACTTATATCAAGAGCG
14820152 TCCCTACATTTAGCTTA
1 TCCCTACATTTAGCTTA
14820169 TTTTCATCAA
Statistics
Matches: 98, Mismatches: 11, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
32 67 0.68
33 1 0.01
34 1 0.01
35 5 0.05
36 1 0.01
37 23 0.23
ACGTcount: A:0.27, C:0.27, G:0.13, T:0.34
Consensus pattern (32 bp):
TCCCTACATTTAGCTTACTTATATCAAGAGCG
Found at i:14820197 original size:101 final size:101
Alignment explanation
Indices: 14820019--14820237 Score: 228
Period size: 101 Copynumber: 2.2 Consensus size: 101
14820009 GAAAGCCTCC
* *
14820019 TCCCTACATTCTGCTTAATTATATCAGAAGCGTCCCTACATTCAGCTTACATATAGTAGGAGTGC
1 TCCCTACATTCAGCTTAATTATATCAGAAGCGTCCCTACATTCAGCTTACATATAGTAAGAGTGC
* * * * *
14820084 TTCCTCCCTACATTTAGCTTACTTATATCAAGAGCG
66 TTCCTACCTACATTCAACTTACTTACATCAAGAACG
* * * * *
14820120 TCCCTACATTCAGCTTACTTATATCA-AGAGCGTCCCTACATTTAGCTTA-TTTTCA-TCAAGTG
1 TCCCTACATTCAGCTTAATTATATCAGA-AGCGTCCCTACATTCAGCTTACATAT-AGT-AAGAG
* * * * *
14820182 TGCTTCTTACTTACATTCAACTTATTTACATCAGGAATG
63 TGCTTCCTACCTACATTCAACTTACTTACATCAAGAACG
*
14820221 TCTCTACATTCAGCTTA
1 TCCCTACATTCAGCTTA
14820238 GTTACAACAT
Statistics
Matches: 97, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
100 4 0.04
101 93 0.96
ACGTcount: A:0.26, C:0.25, G:0.12, T:0.37
Consensus pattern (101 bp):
TCCCTACATTCAGCTTAATTATATCAGAAGCGTCCCTACATTCAGCTTACATATAGTAAGAGTGC
TTCCTACCTACATTCAACTTACTTACATCAAGAACG
Found at i:14820324 original size:69 final size:69
Alignment explanation
Indices: 14820091--14820338 Score: 218
Period size: 69 Copynumber: 3.7 Consensus size: 69
14820081 TGCTTCCTCC
* * * * *
14820091 CTACATTTAGCTTACTTATATCAAGA--G---CGTCCCTACATTCAGCTTACTTATATCAAGAGC
1 CTACATTTAGCTTACTTACATCAAGAGTGCTTCCTCCCTACATTCAACTTACTTACATCAGGAGC
*
14820151 GTCC
66 GTCT
* * * * * * * **
14820155 CTACATTTAGCTTATTTTCATCAAGTGTGCTTCTTACTTACATTCAACTTATTTACATCAGGAAT
1 CTACATTTAGCTTACTTACATCAAGAGTGCTTCCTCCCTACATTCAACTTACTTACATCAGGAGC
14820220 GTCT
66 GTCT
* * * * * * *
14820224 CTACATTCAGCTTAGTTACAACATGAATGCTTCCTCCCTACATCCAACTTACTTACATCAGGTGC
1 CTACATTTAGCTTACTTACATCAAGAGTGCTTCCTCCCTACATTCAACTTACTTACATCAGGAGC
14820289 GTCT
66 GTCT
* * * **
14820293 TTAGATTTAGCTTACTTACATCAAGCGTGCTTCCTCTATACATTCA
1 CTACATTTAGCTTACTTACATCAAGAGTGCTTCCTCCCTACATTCA
14820339 TTACCCATGG
Statistics
Matches: 139, Mismatches: 40, Indels: 5
0.76 0.22 0.03
Matches are distributed among these distances:
64 22 0.16
66 1 0.01
69 116 0.83
ACGTcount: A:0.27, C:0.25, G:0.11, T:0.37
Consensus pattern (69 bp):
CTACATTTAGCTTACTTACATCAAGAGTGCTTCCTCCCTACATTCAACTTACTTACATCAGGAGC
GTCT
Found at i:14823353 original size:17 final size:17
Alignment explanation
Indices: 14823331--14823373 Score: 86
Period size: 17 Copynumber: 2.5 Consensus size: 17
14823321 TGTAGGTGTT
14823331 TGAAAGAAGAATTTTAG
1 TGAAAGAAGAATTTTAG
14823348 TGAAAGAAGAATTTTAG
1 TGAAAGAAGAATTTTAG
14823365 TGAAAGAAG
1 TGAAAGAAG
14823374 GAGAGTAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.49, C:0.00, G:0.26, T:0.26
Consensus pattern (17 bp):
TGAAAGAAGAATTTTAG
Found at i:14826724 original size:49 final size:49
Alignment explanation
Indices: 14826647--14826761 Score: 169
Period size: 49 Copynumber: 2.3 Consensus size: 49
14826637 CCCACATTGT
* *
14826647 GCACATAGCCGGAGTCGTCGA-CATCATCGACTTATGCGCACTCCTTACTC
1 GCACATAGCCGG-GTCATC-ATCATCATCGACTTATGCGCACTCCCTACTC
* *
14826697 GCACATAGTCGGGTCATCATCATCATCGGCTTATGCGCACTCCCTACTC
1 GCACATAGCCGGGTCATCATCATCATCGACTTATGCGCACTCCCTACTC
14826746 GCACATAGCCGGGTCA
1 GCACATAGCCGGGTCA
14826762 ATATTATCAC
Statistics
Matches: 59, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
48 1 0.02
49 47 0.80
50 11 0.19
ACGTcount: A:0.22, C:0.34, G:0.21, T:0.23
Consensus pattern (49 bp):
GCACATAGCCGGGTCATCATCATCATCGACTTATGCGCACTCCCTACTC
Found at i:14828885 original size:30 final size:30
Alignment explanation
Indices: 14828849--14828909 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
14828839 AATAAGCTTC
* *
14828849 CACCAAAGCTTAAAGATCCAGGGAGTTTTT
1 CACCAAAACTTAAAGATCCAGAGAGTTTTT
14828879 CACCAAAACTTAAAGATCCAGAGAGTTTTT
1 CACCAAAACTTAAAGATCCAGAGAGTTTTT
14828909 C
1 C
14828910 TATTCCTTGC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.26
Consensus pattern (30 bp):
CACCAAAACTTAAAGATCCAGAGAGTTTTT
Found at i:14829708 original size:14 final size:14
Alignment explanation
Indices: 14829686--14829728 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
14829676 CTCTAACTTA
*
14829686 CTTTCTTTTATTTT
1 CTTTTTTTTATTTT
14829700 CTTTTTTTTATTTTT
1 CTTTTTTTTA-TTTT
*
14829715 TTATTTTTTTATTT
1 CT-TTTTTTTATTT
14829729 ATTTAATTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 9 0.36
15 8 0.32
16 8 0.32
ACGTcount: A:0.09, C:0.07, G:0.00, T:0.84
Consensus pattern (14 bp):
CTTTTTTTTATTTT
Found at i:14829713 original size:8 final size:8
Alignment explanation
Indices: 14829702--14829733 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
14829692 TTTATTTTCT
14829702 TTTTTTTA
1 TTTTTTTA
14829710 TTTTTTTA
1 TTTTTTTA
14829718 TTTTTTTA
1 TTTTTTTA
*
14829726 TTTATTTA
1 TTTTTTTA
14829734 ATTATTAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (8 bp):
TTTTTTTA
Found at i:14829738 original size:20 final size:19
Alignment explanation
Indices: 14829701--14829739 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
14829691 TTTTATTTTC
**
14829701 TTTTTTTTATTTTTTTATT
1 TTTTTTTTATTTAATTATT
14829720 TTTTTATTTATTTAATTATT
1 TTTTT-TTTATTTAATTATT
14829740 AAATTATTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (19 bp):
TTTTTTTTATTTAATTATT
Found at i:14829828 original size:18 final size:15
Alignment explanation
Indices: 14829805--14829918 Score: 50
Period size: 16 Copynumber: 7.1 Consensus size: 15
14829795 AAATTAATTC
14829805 AAAATAAATTTCAAGAAA
1 AAAATAAATTT--A-AAA
*
14829823 AAAATATATTTAAAA
1 AAAATAAATTTAAAA
* **
14829838 AAAATAAATATAATTC
1 AAAATAAATTTAA-AA
*
14829854 AAAA-AATTTTCCAAAA
1 AAAATAAATTT--AAAA
**
14829870 AAAATTCATGTTAAAA
1 AAAATAAAT-TTAAAA
* *
14829886 AAACTATATTTCAAAA
1 AAAATAAATTT-AAAA
*
14829902 AAAATCAAATTCAAAA
1 AAAAT-AAATTTAAAA
14829918 A
1 A
14829919 TAAAAGTGAT
Statistics
Matches: 71, Mismatches: 18, Indels: 16
0.68 0.17 0.15
Matches are distributed among these distances:
15 20 0.28
16 32 0.45
17 7 0.10
18 12 0.17
ACGTcount: A:0.63, C:0.08, G:0.02, T:0.27
Consensus pattern (15 bp):
AAAATAAATTTAAAA
Found at i:14829837 original size:29 final size:28
Alignment explanation
Indices: 14829776--14829842 Score: 82
Period size: 29 Copynumber: 2.4 Consensus size: 28
14829766 CAGGTTCATG
*
14829776 TAAAAAAAATTTTAAAAAAAAATTAATT
1 TAAAAAAAATTTCAAAAAAAAATTAATT
* *
14829804 CAAAATAAATTTCAAGAAAAAAA-TATATT
1 TAAAAAAAATTTCAA-AAAAAAATTA-ATT
14829833 TAAAAAAAAT
1 TAAAAAAAAT
14829843 AAATATAATT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
28 14 0.44
29 18 0.56
ACGTcount: A:0.67, C:0.03, G:0.01, T:0.28
Consensus pattern (28 bp):
TAAAAAAAATTTCAAAAAAAAATTAATT
Found at i:14829848 original size:19 final size:18
Alignment explanation
Indices: 14829805--14829859 Score: 56
Period size: 18 Copynumber: 2.9 Consensus size: 18
14829795 AAATTAATTC
* * *
14829805 AAAATAAATTTCAAGAAA
1 AAAATATATTTAAAAAAA
14829823 AAAATATATTTAAAAAAA
1 AAAATATATTTAAAAAAA
*
14829841 ATAAATATAATTCAAAAAA
1 A-AAATAT-ATTTAAAAAA
14829860 TTTTCCAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
18 16 0.52
19 6 0.19
20 9 0.29
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.25
Consensus pattern (18 bp):
AAAATATATTTAAAAAAA
Found at i:14829871 original size:47 final size:48
Alignment explanation
Indices: 14829789--14829888 Score: 127
Period size: 48 Copynumber: 2.1 Consensus size: 48
14829779 AAAAAATTTT
14829789 AAAAAAAAATTAATTCAAAATAAATTTCAAGAAAAAAATAT-AT-TTAA
1 AAAAAAAAATTAATTCAAAATAAATTTCAAGAAAAAAAT-TCATGTTAA
* *
14829836 AAAAAATAAATATAATTCAAAA-AATTTTCCA-AAAAAAATTCATGTTAA
1 AAAAAA-AAAT-TAATTCAAAATAAATTTCAAGAAAAAAATTCATGTTAA
14829884 AAAAA
1 AAAAA
14829889 CTATATTTCA
Statistics
Matches: 47, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
46 1 0.02
47 16 0.34
48 20 0.43
49 10 0.21
ACGTcount: A:0.65, C:0.06, G:0.02, T:0.27
Consensus pattern (48 bp):
AAAAAAAAATTAATTCAAAATAAATTTCAAGAAAAAAATTCATGTTAA
Found at i:14843115 original size:21 final size:21
Alignment explanation
Indices: 14843091--14843158 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 21
14843081 GTTCATGCAA
*
14843091 TTCATGAAAAAGAATGATGCC
1 TTCATGACAAAGAATGATGCC
**
14843112 TTCATTG-CAAAGACCGATGCC
1 TTCA-TGACAAAGAATGATGCC
* *
14843133 TACATGACAAAGAATTATGCC
1 TTCATGACAAAGAATGATGCC
*
14843154 ATCAT
1 TTCAT
14843159 TCAAAGTCAA
Statistics
Matches: 36, Mismatches: 9, Indels: 4
0.73 0.18 0.08
Matches are distributed among these distances:
20 2 0.06
21 32 0.89
22 2 0.06
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.25
Consensus pattern (21 bp):
TTCATGACAAAGAATGATGCC
Found at i:14843385 original size:12 final size:12
Alignment explanation
Indices: 14843368--14843405 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
14843358 TTCATTTTGA
14843368 TGAAAAAGAAAT
1 TGAAAAAGAAAT
**
14843380 TGAAAAAGATGT
1 TGAAAAAGAAAT
14843392 TGAAAAAGAAAT
1 TGAAAAAGAAAT
14843404 TG
1 TG
14843406 TGGTTGAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.58, C:0.00, G:0.21, T:0.21
Consensus pattern (12 bp):
TGAAAAAGAAAT
Found at i:14849480 original size:20 final size:21
Alignment explanation
Indices: 14849451--14849491 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
14849441 AAATTTACTG
* *
14849451 ATTAGTTTTAGTTTTA-TTTT
1 ATTAGATTTAATTTTACTTTT
14849471 ATTAGATTTAATTTTACTTTT
1 ATTAGATTTAATTTTACTTTT
14849492 TAATAATTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.24, C:0.02, G:0.07, T:0.66
Consensus pattern (21 bp):
ATTAGATTTAATTTTACTTTT
Found at i:14849500 original size:21 final size:22
Alignment explanation
Indices: 14849467--14849507 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
14849457 TTTAGTTTTA
* *
14849467 TTTTATTAGATTTAATTTTACT
1 TTTTAATAGATTTAAATTTACT
14849489 TTTTAATA-ATTTAAATTTA
1 TTTTAATAGATTTAAATTTA
14849508 ATTGTTTGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (22 bp):
TTTTAATAGATTTAAATTTACT
Found at i:14852013 original size:11 final size:11
Alignment explanation
Indices: 14851997--14852057 Score: 81
Period size: 11 Copynumber: 5.7 Consensus size: 11
14851987 CTCTTTCTTT
14851997 TTTTCTTTTTC
1 TTTTCTTTTTC
*
14852008 TTTTC-TTTCC
1 TTTTCTTTTTC
*
14852018 TTTTTTTTTTC
1 TTTTCTTTTTC
*
14852029 TTTTTTTTTTC
1 TTTTCTTTTTC
14852040 TTTTCTTTTT-
1 TTTTCTTTTTC
14852050 TTTTCTTT
1 TTTTCTTT
14852058 CTTTCTTTCT
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
10 16 0.36
11 29 0.64
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTCTTTTTC
Found at i:14852030 original size:27 final size:26
Alignment explanation
Indices: 14851989--14852070 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 26
14851979 CATGCCCACT
14851989 CTTTCTTTTTTTCTTTTTCTTTTCTTTC
1 CTTT-TTTTTTTCTTTTT-TTTTCTTTC
*
14852017 CTTTTTTTTTTCTTTTTTTTTTCTTTT
1 CTTTTTTTTTTC-TTTTTTTTTCTTTC
14852044 C-TTTTTTTTTCTTTCTTTCTTTCTTTC
1 CTTTTTTTTTTCTTT-TTT-TTTCTTTC
14852071 ATTGTCCAAC
Statistics
Matches: 49, Mismatches: 2, Indels: 7
0.84 0.03 0.12
Matches are distributed among these distances:
25 3 0.06
26 13 0.27
27 24 0.49
28 9 0.18
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (26 bp):
CTTTTTTTTTTCTTTTTTTTTCTTTC
Found at i:14852058 original size:4 final size:4
Alignment explanation
Indices: 14851988--14852070 Score: 70
Period size: 4 Copynumber: 21.5 Consensus size: 4
14851978 CCATGCCCAC
* *
14851988 TCTT TCTT TTTT TC-T T-TT TCTTT TCTT TCCTT T-TT TTTT TCTT T-TT
1 TCTT TCTT TCTT TCTT TCTT TC-TT TCTT T-CTT TCTT TCTT TCTT TCTT
*
14852034 TTTT TCTTT TCTT T-TT T-TT TCTT TCTT TCTT TCTT TC
1 TCTT TC-TT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TC
14852071 ATTGTCCAAC
Statistics
Matches: 67, Mismatches: 4, Indels: 16
0.77 0.05 0.18
Matches are distributed among these distances:
3 16 0.24
4 39 0.58
5 12 0.18
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (4 bp):
TCTT
Found at i:14854200 original size:5 final size:5
Alignment explanation
Indices: 14854193--14854258 Score: 62
Period size: 5 Copynumber: 13.0 Consensus size: 5
14854183 ATATATATAC
* * *
14854193 TTTAC TTTAT TTTAT TTTAT TTTAT TTTTT TATTTT TTTAT TTTAT TATTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT T-TTAT TTTAT TTTAT T-TTAT
* *
14854245 TATGT TTT-T TTTAT
1 TTTAT TTTAT TTTAT
14854259 GCCCCCATTA
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
4 4 0.08
5 38 0.73
6 10 0.19
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.79
Consensus pattern (5 bp):
TTTAT
Found at i:14854225 original size:8 final size:8
Alignment explanation
Indices: 14854198--14854242 Score: 56
Period size: 8 Copynumber: 5.8 Consensus size: 8
14854188 TATACTTTAC
14854198 TTTATTTT
1 TTTATTTT
* *
14854206 ATT-TTAT
1 TTTATTTT
14854213 TTTATTTT
1 TTTATTTT
14854221 TTTATTTT
1 TTTATTTT
14854229 TTTATTTT
1 TTTATTTT
*
14854237 ATTATT
1 TTTATT
14854243 ATTATGTTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
7 5 0.16
8 26 0.84
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (8 bp):
TTTATTTT
Found at i:14854252 original size:16 final size:16
Alignment explanation
Indices: 14854198--14854245 Score: 71
Period size: 16 Copynumber: 3.1 Consensus size: 16
14854188 TATACTTTAC
14854198 TTTATTTTATT-TTAT
1 TTTATTTTATTATTAT
* *
14854213 TTTATTTTTTTATTTT
1 TTTATTTTATTATTAT
14854229 TTTATTTTATTATTAT
1 TTTATTTTATTATTAT
14854245 T
1 T
14854246 ATGTTTTTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
15 10 0.36
16 18 0.64
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTATTTTATTATTAT
Found at i:14854254 original size:26 final size:26
Alignment explanation
Indices: 14854202--14854256 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
14854192 CTTTACTTTA
* *
14854202 TTTTATTTTATTTTATTTTTTTATTT
1 TTTTATTTTATTTTATTATGTTATTT
14854228 TTTTATTTTATTATTATTATGTT-TTT
1 TTTTATTTTATT-TTATTATGTTATTT
14854254 TTT
1 TTT
14854257 ATGCCCCCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 18 0.69
27 8 0.31
ACGTcount: A:0.16, C:0.00, G:0.02, T:0.82
Consensus pattern (26 bp):
TTTTATTTTATTTTATTATGTTATTT
Found at i:14854445 original size:36 final size:35
Alignment explanation
Indices: 14854397--14854516 Score: 127
Period size: 34 Copynumber: 3.4 Consensus size: 35
14854387 AGCCCAGCTT
* *
14854397 CCTCTCTTTTCCTTCCCAAAAATCCAACAACACAAGG
1 CCTCTC-TTTCC-TCTCAAAAATCCAACAGCACAAGG
* * *
14854434 CCTCTTTTTCCTCTCAAAAA-CCAATAGCACAAAG
1 CCTCTCTTTCCTCTCAAAAATCCAACAGCACAAGG
* * *
14854468 CCCCTCTTTCCTCTAAAAAAT-CGACAGCACAAGG
1 CCTCTCTTTCCTCTCAAAAATCCAACAGCACAAGG
*
14854502 CCTCCCTTTCCTCTC
1 CCTCTCTTTCCTCTC
14854517 TCAAAAATTA
Statistics
Matches: 68, Mismatches: 14, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
34 50 0.74
35 8 0.12
36 5 0.07
37 5 0.07
ACGTcount: A:0.29, C:0.38, G:0.07, T:0.26
Consensus pattern (35 bp):
CCTCTCTTTCCTCTCAAAAATCCAACAGCACAAGG
Found at i:14855651 original size:9 final size:9
Alignment explanation
Indices: 14855637--14855665 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
14855627 TTTTCTTGTT
14855637 TCTTTTTGC
1 TCTTTTTGC
14855646 TCTTTTTGC
1 TCTTTTTGC
14855655 TCTTTTTGC
1 TCTTTTTGC
14855664 TC
1 TC
14855666 ATGCCTTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.00, C:0.24, G:0.10, T:0.66
Consensus pattern (9 bp):
TCTTTTTGC
Found at i:14865083 original size:57 final size:58
Alignment explanation
Indices: 14865021--14865133 Score: 192
Period size: 58 Copynumber: 2.0 Consensus size: 58
14865011 TTTTGATTTG
* *
14865021 TCAAATTTGGATTTTATT-TTTAAATTATTTTAATTTACTTAGAGATAAATTGGATAA
1 TCAAATTTAGATTTTATTATCTAAATTATTTTAATTTACTTAGAGATAAATTGGATAA
*
14865078 TCAAATTTAGATTTTATTATCTAAATTATTTTCATTTACTTAGAGATAAATTGGAT
1 TCAAATTTAGATTTTATTATCTAAATTATTTTAATTTACTTAGAGATAAATTGGAT
14865134 GACTCAAAGG
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
57 17 0.33
58 35 0.67
ACGTcount: A:0.36, C:0.05, G:0.10, T:0.49
Consensus pattern (58 bp):
TCAAATTTAGATTTTATTATCTAAATTATTTTAATTTACTTAGAGATAAATTGGATAA
Found at i:14869328 original size:69 final size:67
Alignment explanation
Indices: 14869244--14869380 Score: 229
Period size: 69 Copynumber: 2.0 Consensus size: 67
14869234 TTAATACTTT
*
14869244 AACTCATGAACAAAAGTAATGTGAATTAAAATGTCTAACACTCAATCTTAAAGAAATAGATATTT
1 AACTCATGAACAAAAGTAATGTGAATCAAAATGTCTAACACTCAATCTTAAAGAAATAGAT-TTT
14869309 TTC
65 TTC
* *
14869312 NAACTCATGAATAAAAGTAATGTGAATCAAAATGTCTAAGACTCAATCTTAAAGAAATAGATTTT
1 -AACTCATGAACAAAAGTAATGTGAATCAAAATGTCTAACACTCAATCTTAAAGAAATAGATTTT
14869377 TTC
65 TTC
14869380 A
1 A
14869381 GTATATAATT
Statistics
Matches: 65, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
67 1 0.02
68 6 0.09
69 58 0.89
ACGTcount: A:0.45, C:0.12, G:0.11, T:0.31
Consensus pattern (67 bp):
AACTCATGAACAAAAGTAATGTGAATCAAAATGTCTAACACTCAATCTTAAAGAAATAGATTTTT
TC
Found at i:14870763 original size:22 final size:20
Alignment explanation
Indices: 14870738--14870787 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 20
14870728 GGGATCAAAC
*
14870738 ATAAATATAATATACATGATAT
1 ATAAATATAA-ATAAAT-ATAT
14870760 ATAAATATAAATAAATATAT
1 ATAAATATAAATAAATATAT
*
14870780 ATATATAT
1 ATAAATAT
14870788 GTATGTATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
20 11 0.42
21 5 0.19
22 10 0.38
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (20 bp):
ATAAATATAAATAAATATAT
Found at i:14872770 original size:55 final size:55
Alignment explanation
Indices: 14872705--14872813 Score: 191
Period size: 55 Copynumber: 2.0 Consensus size: 55
14872695 CTCCTTCTTG
* *
14872705 CTCCTTAATCTGCTTGTTGCTTGTTGGTTTTATCTTAGTTTTTAGAAGTTTCATT
1 CTCCTTAATCTGCATGTTGCATGTTGGTTTTATCTTAGTTTTTAGAAGTTTCATT
*
14872760 CTCCTTAATCTGCATGTTGCATGTTGGTTTTATTTTAGTTTTTAGAAGTTTCAT
1 CTCCTTAATCTGCATGTTGCATGTTGGTTTTATCTTAGTTTTTAGAAGTTTCAT
14872814 ACACTTATTC
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 51 1.00
ACGTcount: A:0.17, C:0.14, G:0.17, T:0.53
Consensus pattern (55 bp):
CTCCTTAATCTGCATGTTGCATGTTGGTTTTATCTTAGTTTTTAGAAGTTTCATT
Found at i:14886300 original size:42 final size:42
Alignment explanation
Indices: 14886254--14886379 Score: 144
Period size: 42 Copynumber: 3.0 Consensus size: 42
14886244 TGTTGATGTG
* *
14886254 GACCCGGCTATATGTGAGTAGGAGTGTACATAAGCCGATGAT
1 GACCCGGCTATATGCGAGTAGGAGTGCACATAAGCCGATGAT
* *
14886296 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGATGAT
1 GACCCGGCTATATGCGAGTAGGAGTGCACATAAGCCGATGAT
* * * * * * *
14886338 GACCCAGCCATATGCTAGTGGGGAGTGCGCATGAGCTGATGA
1 GACCCGGCTATATGCGAGT-AGGAGTGCACATAAGCCGATGA
14886380 CGATGGGAGA
Statistics
Matches: 72, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
42 53 0.74
43 19 0.26
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (42 bp):
GACCCGGCTATATGCGAGTAGGAGTGCACATAAGCCGATGAT
Found at i:14889007 original size:21 final size:21
Alignment explanation
Indices: 14888952--14889009 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 21
14888942 ATAACTTAAG
* * *
14888952 TTCAAAACTTATTCAAACAAC
1 TTCAAAAATAATTCAAACAAA
* *
14888973 TTTAAAAATCATTCAAACAAA
1 TTCAAAAATAATTCAAACAAA
*
14888994 TTCAAAGATAATTCAA
1 TTCAAAAATAATTCAA
14889010 GTAATTTTTA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.52, C:0.17, G:0.02, T:0.29
Consensus pattern (21 bp):
TTCAAAAATAATTCAAACAAA
Found at i:14890899 original size:2 final size:2
Alignment explanation
Indices: 14890892--14890937 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
14890882 GTCTGTCGAT
*
14890892 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA GA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14890934 TA TA
1 TA TA
14890938 GAGAGAGAGA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
TA
Found at i:14890942 original size:2 final size:2
Alignment explanation
Indices: 14890937--14890969 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
14890927 ATATATATAT
14890937 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
14890970 CAATATAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:14891107 original size:14 final size:15
Alignment explanation
Indices: 14891088--14891117 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
14891078 ATCTTAGATA
14891088 ATCAAGA-AAATATG
1 ATCAAGAGAAATATG
14891102 ATCAAGAGAAATATG
1 ATCAAGAGAAATATG
14891117 A
1 A
14891118 ATTATGTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.57, C:0.07, G:0.17, T:0.20
Consensus pattern (15 bp):
ATCAAGAGAAATATG
Found at i:14894901 original size:43 final size:43
Alignment explanation
Indices: 14894844--14894934 Score: 101
Period size: 43 Copynumber: 2.1 Consensus size: 43
14894834 GTAATGATAT
* * *
14894844 TGACTCGGCTATGTGCAAGTAAGGAGTGCACATAAGCCGATGA
1 TGACCCGGCTATGTGCAAGTAAGGAATGCACATAACCCGATGA
* * * ** *
14894887 TGACCCGGTTATGTGCGAGTAGGGAATGTGCATAACCCGGTGA
1 TGACCCGGCTATGTGCAAGTAAGGAATGCACATAACCCGATGA
14894930 TGACC
1 TGACC
14894935 TAGCCATGTG
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.26, C:0.20, G:0.32, T:0.22
Consensus pattern (43 bp):
TGACCCGGCTATGTGCAAGTAAGGAATGCACATAACCCGATGA
Done.