Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41236440
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2030548 characters in sequence are not A, C, G, or T
File 55 of 106
Found at i:20704333 original size:21 final size:21
Alignment explanation
Indices: 20704309--20704393 Score: 61
Period size: 21 Copynumber: 4.2 Consensus size: 21
20704299 CCAGAACTGG
20704309 TTCTCGCTGCAGCGAAAAACT
1 TTCTCGCTGCAGCGAAAAACT
* * * * *
20704330 TTCT-GTTTCTGGGTAACAA--
1 TTCTCGCTGCAGCG-AAAAACT
** *
20704349 TT-TCGCTGCAGCGAAATTCA
1 TTCTCGCTGCAGCGAAAAACT
20704369 TTCTCGCTGCAGCGAAAAACT
1 TTCTCGCTGCAGCGAAAAACT
20704390 TTCT
1 TTCT
20704394 GTTTTGTCTC
Statistics
Matches: 44, Mismatches: 15, Indels: 10
0.64 0.22 0.14
Matches are distributed among these distances:
18 3 0.07
19 7 0.16
20 7 0.16
21 27 0.61
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.32
Consensus pattern (21 bp):
TTCTCGCTGCAGCGAAAAACT
Found at i:20705581 original size:15 final size:15
Alignment explanation
Indices: 20705557--20705595 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
20705547 CTTCTTCTTC
20705557 CTTCTCTTCCTTTTTT
1 CTTCT-TTCCTTTTTT
20705573 CTTCTTTCCTTTTTT
1 CTTCTTTCCTTTTTT
*
20705588 CTTTTTTC
1 CTTCTTTC
20705596 TTCTTAAGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 17 0.77
16 5 0.23
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (15 bp):
CTTCTTTCCTTTTTT
Found at i:20705586 original size:16 final size:16
Alignment explanation
Indices: 20705544--20705590 Score: 62
Period size: 15 Copynumber: 3.1 Consensus size: 16
20705534 CTCTCTCTTG
* *
20705544 TCTCTT-CTTCTTCCT
1 TCTCTTCCTTTTTTCT
20705559 TCTCTTCCTTTTTTCT
1 TCTCTTCCTTTTTTCT
20705575 TCT-TTCCTTTTTTCT
1 TCTCTTCCTTTTTTCT
20705590 T
1 T
20705591 TTTTCTTCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 19 0.66
16 10 0.34
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (16 bp):
TCTCTTCCTTTTTTCT
Found at i:20708568 original size:20 final size:21
Alignment explanation
Indices: 20708543--20708598 Score: 69
Period size: 20 Copynumber: 2.7 Consensus size: 21
20708533 AGATCAATTT
*
20708543 AAAGAAAGGAGAAAG-GAAAG
1 AAAGAAAGGAGAAAGAAAAAG
*
20708563 AAAGAAAAGAGAAAGAAAAAG
1 AAAGAAAGGAGAAAGAAAAAG
*
20708584 AGAGAAAGGAAGAAA
1 AAAGAAAGG-AGAAA
20708599 AAAGGTTGGT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 14 0.47
21 11 0.37
22 5 0.17
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (21 bp):
AAAGAAAGGAGAAAGAAAAAG
Found at i:20708587 original size:14 final size:15
Alignment explanation
Indices: 20708543--20708599 Score: 64
Period size: 14 Copynumber: 3.8 Consensus size: 15
20708533 AGATCAATTT
20708543 AAAGAAAGGAGAAAG-G
1 AAAGAAA-GA-AAAGAG
20708559 AAAGAAAGAAAAGAG
1 AAAGAAAGAAAAGAG
*
20708574 AAAGAAA-AAGAGAG
1 AAAGAAAGAAAAGAG
*
20708588 AAAGGAAGAAAA
1 AAAGAAAGAAAA
20708600 AAGGTTGGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
14 16 0.44
15 13 0.36
16 7 0.19
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (15 bp):
AAAGAAAGAAAAGAG
Found at i:20709817 original size:35 final size:35
Alignment explanation
Indices: 20709778--20709850 Score: 85
Period size: 35 Copynumber: 2.1 Consensus size: 35
20709768 GGAGTGCGTG
20709778 TGATGATATTGA-AATGTGCGTGTAGGGAGTGAACA
1 TGATGATATT-ACAATGTGCGTGTAGGGAGTGAACA
* ** * *
20709813 TGATGGTATTACCTTGTGGGTGTAGGGAGTGCACA
1 TGATGATATTACAATGTGCGTGTAGGGAGTGAACA
20709848 TGA
1 TGA
20709851 GCTGAGTAAG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
34 1 0.03
35 31 0.97
ACGTcount: A:0.26, C:0.08, G:0.36, T:0.30
Consensus pattern (35 bp):
TGATGATATTACAATGTGCGTGTAGGGAGTGAACA
Found at i:20718841 original size:20 final size:20
Alignment explanation
Indices: 20718816--20718856 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
20718806 ATAAGCCTTG
*
20718816 TTGATTTTTATGAAATGAAA
1 TTGATTTATATGAAATGAAA
20718836 TTGATTTATATGAAATGAAA
1 TTGATTTATATGAAATGAAA
20718856 T
1 T
20718857 GAGATTTGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.44
Consensus pattern (20 bp):
TTGATTTATATGAAATGAAA
Found at i:20718872 original size:25 final size:25
Alignment explanation
Indices: 20718825--20718874 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
20718815 GTTGATTTTT
*
20718825 ATGAAATGAAATTGATTTATATGAA
1 ATGAAATGAAATTGATGTATATGAA
*
20718850 ATGAAATGAGATTTGATGT-TATGAA
1 ATGAAATGA-AATTGATGTATATGAA
20718875 TCATATTATG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.44, C:0.00, G:0.20, T:0.36
Consensus pattern (25 bp):
ATGAAATGAAATTGATGTATATGAA
Found at i:20719233 original size:23 final size:22
Alignment explanation
Indices: 20719207--20719257 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 22
20719197 GAGTTCTATA
20719207 AATATTGTTTTATAAAAAAATGT
1 AATATT-TTTTATAAAAAAATGT
* *
20719230 AATA--TTTTATTAGAAAATGT
1 AATATTTTTTATAAAAAAATGT
20719250 AATATTTT
1 AATATTTT
20719258 ATTAAATAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
20 18 0.75
22 2 0.08
23 4 0.17
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (22 bp):
AATATTTTTTATAAAAAAATGT
Found at i:20719239 original size:20 final size:20
Alignment explanation
Indices: 20719214--20719259 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
20719204 ATAAATATTG
20719214 TTTTATAAAAAAATGTAATA
1 TTTTATAAAAAAATGTAATA
* *
20719234 TTTTATTAGAAAATGTAATA
1 TTTTATAAAAAAATGTAATA
20719254 TTTTAT
1 TTTTAT
20719260 TAAATAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.46, C:0.00, G:0.07, T:0.48
Consensus pattern (20 bp):
TTTTATAAAAAAATGTAATA
Found at i:20719260 original size:20 final size:20
Alignment explanation
Indices: 20719223--20719261 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
20719213 GTTTTATAAA
20719223 AAAATGTAATATTTTATTAG
1 AAAATGTAATATTTTATTAG
20719243 AAAATGTAATATTTTATTA
1 AAAATGTAATATTTTATTA
20719262 AATAATTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (20 bp):
AAAATGTAATATTTTATTAG
Found at i:20722480 original size:90 final size:89
Alignment explanation
Indices: 20722327--20722502 Score: 343
Period size: 90 Copynumber: 2.0 Consensus size: 89
20722317 AAACCCTAGG
20722327 AAGGAAAAATTCAAGAGAAATTGTTGGATTTCAAGGAATCAAGCAAGTAAAGGTAAGATTTTTTT
1 AAGGAAAAATTCAAGAGAAATTGTTGGATTTCAAGGAATCAAGCAAGTAAAGGTAAGATTTTTTT
20722392 AATTTTAGCTTGTGATCTACCNAGT
66 AATTTTAGCTTGTGATCTACC-AGT
20722417 AAGGAAAAATTCAAGAGAAATTGTTGGATTTCAAGGAATCAAGCAAGTAAAGGTAAGATTTTTTT
1 AAGGAAAAATTCAAGAGAAATTGTTGGATTTCAAGGAATCAAGCAAGTAAAGGTAAGATTTTTTT
20722482 AATTTTAGCTTGTGATCTACC
66 AATTTTAGCTTGTGATCTACC
20722503 TTTCCCATGA
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
90 86 1.00
ACGTcount: A:0.38, C:0.09, G:0.20, T:0.32
Consensus pattern (89 bp):
AAGGAAAAATTCAAGAGAAATTGTTGGATTTCAAGGAATCAAGCAAGTAAAGGTAAGATTTTTTT
AATTTTAGCTTGTGATCTACCAGT
Found at i:20729278 original size:15 final size:15
Alignment explanation
Indices: 20729258--20729303 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
20729248 TTCTTAAAAC
20729258 AACTTTAAAACCAAA
1 AACTTTAAAACCAAA
20729273 AACTTTAAAATCC-AA
1 AACTTTAAAA-CCAAA
* *
20729288 AGCTTTAAAATCAAA
1 AACTTTAAAACCAAA
20729303 A
1 A
20729304 TATCTGATCT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
14 1 0.04
15 24 0.89
16 2 0.07
ACGTcount: A:0.57, C:0.17, G:0.02, T:0.24
Consensus pattern (15 bp):
AACTTTAAAACCAAA
Found at i:20730711 original size:13 final size:13
Alignment explanation
Indices: 20730693--20730717 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
20730683 TTTCAGAAAA
20730693 TTTATAAAATCAT
1 TTTATAAAATCAT
20730706 TTTATAAAATCA
1 TTTATAAAATCA
20730718 CAATTTCTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTATAAAATCAT
Found at i:20733194 original size:29 final size:28
Alignment explanation
Indices: 20733160--20733229 Score: 77
Period size: 30 Copynumber: 2.4 Consensus size: 28
20733150 TAAAGGCCCG
* **
20733160 AAATGATATGTGCATATGTTTGGCACTT
1 AAATGATATGAGCATACATTTGGCACTT
*
20733188 AGAATGATATAGAGCATGCATTTGGCACTT
1 A-AATGATAT-GAGCATACATTTGGCACTT
20733218 AAATGAATATGA
1 AAATG-ATATGA
20733230 CATGAGAGCA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
28 1 0.03
29 14 0.40
30 20 0.57
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.33
Consensus pattern (28 bp):
AAATGATATGAGCATACATTTGGCACTT
Found at i:20742630 original size:42 final size:42
Alignment explanation
Indices: 20742492--20742618 Score: 193
Period size: 42 Copynumber: 3.0 Consensus size: 42
20742482 CATCCCACCG
*
20742492 TCATCAGCTCATGTG-ATCTTCCCACTCGCACATAGCTGGGTCA
1 TCATCAGCTCATGTGCA-C-TCCCACACGCACATAGCTGGGTCA
* *
20742535 TCATCAGCTCATGTTCACTCCCACACACACATAGCTGGGTCA
1 TCATCAGCTCATGTGCACTCCCACACGCACATAGCTGGGTCA
*
20742577 TCATCAGCTCATGTGCACTCCCACACGCACATAGCTAGGTCA
1 TCATCAGCTCATGTGCACTCCCACACGCACATAGCTGGGTCA
20742619 CCATTATCTC
Statistics
Matches: 77, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
42 61 0.79
43 15 0.19
44 1 0.01
ACGTcount: A:0.24, C:0.35, G:0.17, T:0.24
Consensus pattern (42 bp):
TCATCAGCTCATGTGCACTCCCACACGCACATAGCTGGGTCA
Found at i:20751374 original size:26 final size:26
Alignment explanation
Indices: 20751314--20751375 Score: 106
Period size: 26 Copynumber: 2.4 Consensus size: 26
20751304 ACCATATACC
*
20751314 CATCATCAACATGCACACCATCCCAT
1 CATCATCATCATGCACACCATCCCAT
*
20751340 CATCATCATCATGCACATCATCCCAT
1 CATCATCATCATGCACACCATCCCAT
20751366 CATCATCATC
1 CATCATCATC
20751376 TCATATGCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.32, C:0.40, G:0.03, T:0.24
Consensus pattern (26 bp):
CATCATCATCATGCACACCATCCCAT
Found at i:20751668 original size:42 final size:42
Alignment explanation
Indices: 20751610--20751690 Score: 144
Period size: 42 Copynumber: 1.9 Consensus size: 42
20751600 ACGGAGGCAA
20751610 CAACGGCTTATGTGCACTCCCACTCACACATAGCCGGGTCAG
1 CAACGGCTTATGTGCACTCCCACTCACACATAGCCGGGTCAG
* *
20751652 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGT
1 CAACGGCTTATGTGCACTCCCACTCACACATAGCCGGGT
20751691 TCAAATCAAC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.22, C:0.35, G:0.22, T:0.21
Consensus pattern (42 bp):
CAACGGCTTATGTGCACTCCCACTCACACATAGCCGGGTCAG
Found at i:20753737 original size:22 final size:22
Alignment explanation
Indices: 20753702--20753743 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
20753692 CACAAAAAGT
20753702 TTCTCACTGCAGTGAATTTTTA
1 TTCTCACTGCAGTGAATTTTTA
* *
20753724 TTCTCGCTGTAGTGAATTTT
1 TTCTCACTGCAGTGAATTTT
20753744 GGACAACAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.48
Consensus pattern (22 bp):
TTCTCACTGCAGTGAATTTTTA
Found at i:20755857 original size:38 final size:38
Alignment explanation
Indices: 20755800--20755881 Score: 114
Period size: 38 Copynumber: 2.2 Consensus size: 38
20755790 TGGGGGGGAA
* *
20755800 TTTTAAAATTTTTAAAACTTTGTTTTTATAGGTTT-TTGC
1 TTTTAGAATTTTTAAAACTTTGCTTTTATA--TTTCTTGC
20755839 TTTTAGAA-TTTTAAAACTTTGCTTTTATATTTCTTGC
1 TTTTAGAATTTTTAAAACTTTGCTTTTATATTTCTTGC
20755876 TTTTAG
1 TTTTAG
20755882 GTGTTAGTGA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
36 3 0.08
37 10 0.25
38 20 0.50
39 7 0.17
ACGTcount: A:0.24, C:0.07, G:0.10, T:0.59
Consensus pattern (38 bp):
TTTTAGAATTTTTAAAACTTTGCTTTTATATTTCTTGC
Found at i:20760323 original size:15 final size:15
Alignment explanation
Indices: 20760303--20760357 Score: 58
Period size: 15 Copynumber: 3.5 Consensus size: 15
20760293 TTAAAATTGT
20760303 TTAATTAAGTTATGC
1 TTAATTAAGTTATGC
*
20760318 TTAATTAA-TTAAATTGT
1 TTAATTAAGTT--A-TGC
*
20760335 TTAATTAAGTTGTGC
1 TTAATTAAGTTATGC
20760350 TTAATTAA
1 TTAATTAA
20760358 TTAAATTATT
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
14 2 0.06
15 18 0.55
16 1 0.03
17 10 0.30
18 2 0.06
ACGTcount: A:0.36, C:0.04, G:0.11, T:0.49
Consensus pattern (15 bp):
TTAATTAAGTTATGC
Found at i:20760333 original size:32 final size:32
Alignment explanation
Indices: 20760296--20760450 Score: 157
Period size: 32 Copynumber: 4.6 Consensus size: 32
20760286 CACTTGATTA
20760296 AAATTGTTTAATTAAGTTATGCTTAATTAATT
1 AAATTGTTTAATTAAGTTATGCTTAATTAATT
*
20760328 AAATTGTTTAATTAAGTTGTGCTTAATTAATT
1 AAATTGTTTAATTAAGTTATGCTTAATTAATT
* * **
20760360 AAATTATTTAATTAAGTTATTGGGCCTAATGGATT
1 AAATTGTTTAATTAAGTTA-T--GCTTAATTAATT
* ** *
20760395 AAAATTGTTTAATCAAATTGTTGCGCTTGATTAATT
1 -AAATTGTTTAAT-TAA--GTTATGCTTAATTAATT
*
20760431 AAATTATTTAATTAAGTTAT
1 AAATTGTTTAATTAAGTTAT
20760451 TGGGCTTAAT
Statistics
Matches: 98, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
32 51 0.52
33 1 0.01
34 2 0.02
35 20 0.20
36 19 0.19
37 2 0.02
39 3 0.03
ACGTcount: A:0.36, C:0.05, G:0.12, T:0.47
Consensus pattern (32 bp):
AAATTGTTTAATTAAGTTATGCTTAATTAATT
Found at i:20760437 original size:71 final size:68
Alignment explanation
Indices: 20760296--20760466 Score: 224
Period size: 71 Copynumber: 2.5 Consensus size: 68
20760286 CACTTGATTA
* * * *
20760296 AAATTGTTTAATTAAGTTA-T--GCTTAATTAATT-AAATTGTTTAATTAAGTTGTGCTTAATTA
1 AAATTATTTAATTAAGTTATTGGGCTTAATTGATTAAAATTGTTTAATAAAGTTGCGCTTAATTA
20760357 ATT
66 ATT
* * *
20760360 AAATTATTTAATTAAGTTATTGGGCCTAATGGATTAAAATTGTTTAATCAAATTGTTGCGCTTGA
1 AAATTATTTAATTAAGTTATTGGGCTTAATTGATTAAAATTGTTTAAT-AAA--GTTGCGCTTAA
20760425 TTAATT
63 TTAATT
20760431 AAATTATTTAATTAAGTTATTGGGCTTAATTGATTA
1 AAATTATTTAATTAAGTTATTGGGCTTAATTGATTA
20760467 GATTAAACAA
Statistics
Matches: 91, Mismatches: 9, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
64 18 0.20
65 1 0.01
67 9 0.10
68 12 0.13
69 2 0.02
71 49 0.54
ACGTcount: A:0.35, C:0.05, G:0.13, T:0.47
Consensus pattern (68 bp):
AAATTATTTAATTAAGTTATTGGGCTTAATTGATTAAAATTGTTTAATAAAGTTGCGCTTAATTA
ATT
Found at i:20771966 original size:37 final size:37
Alignment explanation
Indices: 20771916--20772024 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
20771906 CATATACATA
*
20771916 CATCATCATCATGTGTGCACTCCCTACTTGCACACTC
1 CATCATCATCATGTGTGCACTCCCTACTAGCACACTC
*
20771953 CATCATCGTCATGTGTGCACTCCCTACTAGCACACTC
1 CATCATCATCATGTGTGCACTCCCTACTAGCACACTC
* * *
20771990 AATCATCATCATGTGTTCACTCCCTACTCGCACAC
1 CATCATCATCATGTGTGCACTCCCTACTAGCACAC
20772025 CTTAACATCA
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.23, C:0.38, G:0.11, T:0.28
Consensus pattern (37 bp):
CATCATCATCATGTGTGCACTCCCTACTAGCACACTC
Found at i:20772034 original size:37 final size:36
Alignment explanation
Indices: 20771919--20772037 Score: 157
Period size: 37 Copynumber: 3.2 Consensus size: 36
20771909 ATACATACAT
* *
20771919 CATCATCATGTGTGCACTCCCTACTTGCACACTCCAT
1 CATCATCATGTGTGCACTCCCTACTAGCACACT-CAA
*
20771956 CATCGTCATGTGTGCACTCCCTACTAGCACACTCAA
1 CATCATCATGTGTGCACTCCCTACTAGCACACTCAA
* * *
20771992 TCATCATCATGTGTTCACTCCCTACTCGCACACCTTAA
1 -CATCATCATGTGTGCACTCCCTACTAGCACA-CTCAA
20772030 CATCATCA
1 CATCATCA
20772038 CCCAACATCA
Statistics
Matches: 73, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
36 2 0.03
37 67 0.92
38 4 0.05
ACGTcount: A:0.24, C:0.37, G:0.10, T:0.29
Consensus pattern (36 bp):
CATCATCATGTGTGCACTCCCTACTAGCACACTCAA
Found at i:20773265 original size:2 final size:2
Alignment explanation
Indices: 20773258--20773304 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
20773248 AAGGTCTCAC
20773258 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
20773300 AT AT A
1 AT AT A
20773305 CATACATCAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:20781149 original size:37 final size:37
Alignment explanation
Indices: 20781061--20781242 Score: 280
Period size: 37 Copynumber: 5.0 Consensus size: 37
20781051 CTCAATGCAG
20781061 TATCATCATCATGTGTGCACTCCCTACTCGCACA--C
1 TATCATCATCATGTGTGCACTCCCTACTCGCACACTC
* *
20781096 TAACATCATCATGTGTGCACTCCGTACTCGCACACTC
1 TATCATCATCATGTGTGCACTCCCTACTCGCACACTC
20781133 TATCATCATCATGTGTGCACTCCCTACTCGCACACT-
1 TATCATCATCATGTGTGCACTCCCTACTCGCACACTC
* * *
20781169 TCAACGTCATCATGTGTGCACTCCGTACTCGCACACTC
1 T-ATCATCATCATGTGTGCACTCCCTACTCGCACACTC
*
20781207 TATCATCATCATGTGTGCACTCTCTACTCGCACACT
1 TATCATCATCATGTGTGCACTCCCTACTCGCACACT
20781243 TCAACATCAT
Statistics
Matches: 132, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
35 32 0.24
36 1 0.01
37 98 0.74
38 1 0.01
ACGTcount: A:0.23, C:0.36, G:0.13, T:0.29
Consensus pattern (37 bp):
TATCATCATCATGTGTGCACTCCCTACTCGCACACTC
Found at i:20781210 original size:74 final size:74
Alignment explanation
Indices: 20781061--20781254 Score: 356
Period size: 74 Copynumber: 2.6 Consensus size: 74
20781051 CTCAATGCAG
20781061 TATCATCATCATGTGTGCACTCCCTACTCGCACAC-T-AACATCATCATGTGTGCACTCCGTACT
1 TATCATCATCATGTGTGCACTCCCTACTCGCACACTTCAACATCATCATGTGTGCACTCCGTACT
20781124 CGCACACTC
66 CGCACACTC
*
20781133 TATCATCATCATGTGTGCACTCCCTACTCGCACACTTCAACGTCATCATGTGTGCACTCCGTACT
1 TATCATCATCATGTGTGCACTCCCTACTCGCACACTTCAACATCATCATGTGTGCACTCCGTACT
20781198 CGCACACTC
66 CGCACACTC
*
20781207 TATCATCATCATGTGTGCACTCTCTACTCGCACACTTCAACATCATCA
1 TATCATCATCATGTGTGCACTCCCTACTCGCACACTTCAACATCATCA
20781255 CGGAACATTA
Statistics
Matches: 117, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
72 35 0.30
73 1 0.01
74 81 0.69
ACGTcount: A:0.24, C:0.36, G:0.12, T:0.29
Consensus pattern (74 bp):
TATCATCATCATGTGTGCACTCCCTACTCGCACACTTCAACATCATCATGTGTGCACTCCGTACT
CGCACACTC
Found at i:20791409 original size:17 final size:17
Alignment explanation
Indices: 20791369--20791410 Score: 52
Period size: 15 Copynumber: 2.6 Consensus size: 17
20791359 TTTCAAGACA
20791369 ATTTATAAAATCATTTC
1 ATTTATAAAATCATTTC
* *
20791386 ATTTA-AACA-CATTTT
1 ATTTATAAAATCATTTC
20791401 ATTTATAAAA
1 ATTTATAAAA
20791411 CCTAAAGATT
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
15 10 0.48
16 6 0.29
17 5 0.24
ACGTcount: A:0.45, C:0.10, G:0.00, T:0.45
Consensus pattern (17 bp):
ATTTATAAAATCATTTC
Found at i:20808545 original size:16 final size:16
Alignment explanation
Indices: 20808524--20808554 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
20808514 GCAGCACCAG
*
20808524 CTTTTTCTTTCTCTCC
1 CTTTTTCTTGCTCTCC
20808540 CTTTTTCTTGCTCTC
1 CTTTTTCTTGCTCTC
20808555 GGTTGCAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.00, C:0.35, G:0.03, T:0.61
Consensus pattern (16 bp):
CTTTTTCTTGCTCTCC
Found at i:20819857 original size:24 final size:22
Alignment explanation
Indices: 20819821--20819866 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 22
20819811 AAAAATCAAG
*
20819821 TTTTTTTCTTCTCCTTTCTCTT
1 TTTTTTTCTTCTCCATTCTCTT
20819843 TTTTTCTTACTTCTCCATTCTCTT
1 TTTTT-TT-CTTCTCCATTCTCTT
20819867 ACCCCTTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 5 0.24
23 2 0.10
24 14 0.67
ACGTcount: A:0.04, C:0.28, G:0.00, T:0.67
Consensus pattern (22 bp):
TTTTTTTCTTCTCCATTCTCTT
Found at i:20819963 original size:20 final size:20
Alignment explanation
Indices: 20819936--20819982 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
20819926 AGGAGAGAGA
20819936 AAAG-AAGAAA-GAAGAAAGG
1 AAAGAAAGAAAGGAA-AAAGG
20819955 AAAGAAAGAAAGGAAAAAGG
1 AAAGAAAGAAAGGAAAAAGG
20819975 AAGAGAAA
1 AA-AGAAA
20819983 AGTTCAGAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.16
20 13 0.52
21 8 0.32
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (20 bp):
AAAGAAAGAAAGGAAAAAGG
Found at i:20821175 original size:39 final size:39
Alignment explanation
Indices: 20821121--20821259 Score: 147
Period size: 39 Copynumber: 3.6 Consensus size: 39
20821111 ACATCGGTAG
* *
20821121 TGTGCGGTGTGGGAGAACACATG-TCGATGATATATGCCA
1 TGTGCGGTGTAGGAGAGCACATGAT-GATGATATATGCCA
* * *
20821160 TGTGTGGTGTAGGAGAGCACATGATGATGATTTATGACA
1 TGTGCGGTGTAGGAGAGCACATGATGATGATATATGCCA
* * * *
20821199 TGTCCAGTTTAAGAGAGCACATGATGATGATATATGCCA
1 TGTGCGGTGTAGGAGAGCACATGATGATGATATATGCCA
* *
20821238 TATGCGGTG-AGGGAGTGCACAT
1 TGTGCGGTGTA-GGAGAGCACAT
20821260 TAGGATATTA
Statistics
Matches: 80, Mismatches: 18, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
38 1 0.01
39 78 0.98
40 1 0.01
ACGTcount: A:0.28, C:0.13, G:0.32, T:0.27
Consensus pattern (39 bp):
TGTGCGGTGTAGGAGAGCACATGATGATGATATATGCCA
Found at i:20822787 original size:40 final size:40
Alignment explanation
Indices: 20822712--20822789 Score: 129
Period size: 40 Copynumber: 1.9 Consensus size: 40
20822702 TGGCTATTTT
**
20822712 TTCACCTTAGTGGGGTTTTCAACCTTGCCAAGATTGGTTA
1 TTCACCTTAGTGGGGTTTTCAACCTCACCAAGATTGGTTA
*
20822752 TTCACCTTAGTGGGGTTTTCAACCTCACCACGATTGGT
1 TTCACCTTAGTGGGGTTTTCAACCTCACCAAGATTGGT
20822790 GTCTTTACAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (40 bp):
TTCACCTTAGTGGGGTTTTCAACCTCACCAAGATTGGTTA
Found at i:20828126 original size:15 final size:17
Alignment explanation
Indices: 20828102--20828134 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
20828092 TAGGATTGTA
20828102 TTTTATCTAA-TTTAGT
1 TTTTATCTAATTTTAGT
20828118 TTTTA-CTAATTTTAGT
1 TTTTATCTAATTTTAGT
20828134 T
1 T
20828135 GTGTTAGGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.24, C:0.06, G:0.06, T:0.64
Consensus pattern (17 bp):
TTTTATCTAATTTTAGT
Found at i:20828847 original size:14 final size:14
Alignment explanation
Indices: 20828816--20828854 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
20828806 AATCAATATC
*
20828816 AATTAACT-AAATT
1 AATTAACTAAAAAT
20828829 AATTAACTAAAAAT
1 AATTAACTAAAAAT
*
20828843 AATTAACCAAAA
1 AATTAACTAAAA
20828855 TTTAAACTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 8 0.35
14 15 0.65
ACGTcount: A:0.62, C:0.10, G:0.00, T:0.28
Consensus pattern (14 bp):
AATTAACTAAAAAT
Found at i:20833476 original size:86 final size:86
Alignment explanation
Indices: 20833331--20833505 Score: 253
Period size: 86 Copynumber: 2.0 Consensus size: 86
20833321 GTAATTATGT
* * * **
20833331 TGACTCGGCTATGTGTGAGTAGGGAGTGCGCATAAGCCGAGGATGACCCGGTTATGTGCGAGTAG
1 TGACTCGGCTATGTGCGAGTAGGGAGTGCGCATAACCCGAGGATGACCCAGCCATGTGCGAGTAG
20833396 GGAGTGCGCATAACTTGGTGA
66 GGAGTGCGCATAACTTGGTGA
* *
20833417 TGACTCGGTTATGTGCGAGTAGGGAGTGTGCATAACCCG-GTGATGACCCAGCCATGTGCGAGTA
1 TGACTCGGCTATGTGCGAGTAGGGAGTGCGCATAACCCGAG-GATGACCCAGCCATGTGCGAGTA
* *
20833481 GGGAGTGCGCATGAGTTGGTGA
65 GGGAGTGCGCATAACTTGGTGA
20833503 TGA
1 TGA
20833506 TGATGATGGG
Statistics
Matches: 79, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
85 1 0.01
86 78 0.99
ACGTcount: A:0.22, C:0.17, G:0.38, T:0.23
Consensus pattern (86 bp):
TGACTCGGCTATGTGCGAGTAGGGAGTGCGCATAACCCGAGGATGACCCAGCCATGTGCGAGTAG
GGAGTGCGCATAACTTGGTGA
Found at i:20833505 original size:43 final size:43
Alignment explanation
Indices: 20833331--20833492 Score: 209
Period size: 43 Copynumber: 3.8 Consensus size: 43
20833321 GTAATTATGT
* * * *
20833331 TGACTCGGCTATGTGTGAGTAGGGAGTGCGCATAAGCCGAG-GA
1 TGACCCGGTTATGTGCGAGTAGGGAGTGCGCATAACCCG-GTGA
**
20833374 TGACCCGGTTATGTGCGAGTAGGGAGTGCGCATAACTTGGTGA
1 TGACCCGGTTATGTGCGAGTAGGGAGTGCGCATAACCCGGTGA
* *
20833417 TGACTCGGTTATGTGCGAGTAGGGAGTGTGCATAACCCGGTGA
1 TGACCCGGTTATGTGCGAGTAGGGAGTGCGCATAACCCGGTGA
* **
20833460 TGACCCAGCCATGTGCGAGTAGGGAGTGCGCAT
1 TGACCCGGTTATGTGCGAGTAGGGAGTGCGCAT
20833493 GAGTTGGTGA
Statistics
Matches: 103, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
42 1 0.01
43 102 0.99
ACGTcount: A:0.22, C:0.18, G:0.38, T:0.23
Consensus pattern (43 bp):
TGACCCGGTTATGTGCGAGTAGGGAGTGCGCATAACCCGGTGA
Found at i:20834514 original size:37 final size:37
Alignment explanation
Indices: 20834473--20834619 Score: 206
Period size: 37 Copynumber: 4.0 Consensus size: 37
20834463 ATGATGTTGA
* *
20834473 AGTGTGCAAGTAGGAAGTGCACACATGATGATGATAG
1 AGTGTGCGAGTAGGGAGTGCACACATGATGATGATAG
*
20834510 AGTGTGCTAGTAGGGAGTGCACACATGATGATGATAG
1 AGTGTGCGAGTAGGGAGTGCACACATGATGATGATAG
* * *
20834547 AGTGTGCGAGTAGGGAGTGCACATAGGATGATG-TTG
1 AGTGTGCGAGTAGGGAGTGCACACATGATGATGATAG
* *
20834583 AAGCGTGCGAGTAGGGAGTGTACACATGATGATGATA
1 -AGTGTGCGAGTAGGGAGTGCACACATGATGATGATA
20834620 TTGCATTGAG
Statistics
Matches: 97, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
36 2 0.02
37 94 0.97
38 1 0.01
ACGTcount: A:0.31, C:0.10, G:0.36, T:0.23
Consensus pattern (37 bp):
AGTGTGCGAGTAGGGAGTGCACACATGATGATGATAG
Found at i:20836472 original size:181 final size:180
Alignment explanation
Indices: 20835805--20836905 Score: 925
Period size: 182 Copynumber: 6.1 Consensus size: 180
20835795 GGTCGTGACA
* * * * * * *
20835805 TAATTCATTTATAATCATATAAATGATTATAAATGAACATCTTTGGACGTGATGATCAAAGCCTA
1 TAATTCATTTATAATCTTATAAATGATTATAAATTAAAATC-TTGGACTTTATGGTTAAA-CCTA
* * * * ** * *
20835870 TTATAATTGGATGTTTGCATTTGAAAACAT-AAATGGATGCTATTAAATGACTAA-AACAGACCA
64 TTATAATTGGATGTTTGCATTAGGAAACGTGAAGTGGATGCTATCCATTGAC-AAGAAAAGACCA
* * *
20835933 TTTTAAGTTAATCATGCCATCGAACGCTTTGATACAT-GCTTTAAATGATATAT
128 TTTTAAGTTAATCATGCCATCGAAAGCTTTGTTAC-TCACTTTAAATGATATAT
* * * * * *
20835986 TAATTAATTTATAATCTTATAAATGATTATTAATTGGGATAT-TTGAACTTTAAGGTTAAAACCT
1 TAATTCATTTATAATCTTATAAATGATTATAAATT--AAAATCTTGGACTTTATGGTT-AAACCT
* * * * *
20836050 ATCA-AACTTGGATGCTTGAATT-GGAAAACGTGAATTGGATGGC-ATCCATTGACAAGAAAGGA
63 ATTATAA-TTGGATGTTTGCATTAGG-AAACGTGAAGTGGAT-GCTATCCATTGACAAGAAAAGA
* ** * * * * * * **
20836112 CTATTTTAAGTTAATTGTGACATTGAAAGCTATGTGACTAAGTTCGAATGATATAT
125 CCATTTTAAGTTAATCATGCCATCGAAAGCTTTGTTACTCACTTTAAATGATATAT
* ** * * * *
20836168 TAATTCATTTCTAATCTTATAAATGATTATAAATTGAATTTTTTTGAATTTATGGTTAAAGCTTA
1 TAATTCATTTATAATCTTATAAATGATTATAAATT-AAAATCTTGGACTTTATGGTTAAA-CCTA
* * * * *
20836233 TCATAATTGGATGTTTGCATTAGCAAATGTGAAGTGGATGCTATCCCTTGACAAGAAAAAACCAT
64 TTATAATTGGATGTTTGCATTAGGAAACGTGAAGTGGATGCTATCCATTGACAAGAAAAGACCAT
* * * *
20836298 TTTATGTTAATCATGCAATCGAAAACTTTGTTACTCACTCTAAATGATATAT
129 TTTAAGTTAATCATGCCATCGAAAGCTTTGTTACTCACTTTAAATGATATAT
20836350 TAATTCATTTATAATCTTATAAATGATTATAAATTAAAATCTTGGACTTTATGGTTAAACCTTAT
1 TAATTCATTTATAATCTTATAAATGATTATAAATTAAAATCTTGGACTTTATGGTTAAACC-TAT
* * * * * *
20836415 TGTAATTAGATGTTTGCATTAGGAAACGTTAAGTGGATACTATCCCTTTACAAGAAAAGACCATT
65 TATAATTGGATGTTTGCATTAGGAAACGTGAAGTGGATGCTATCCATTGACAAGAAAAGACCATT
* * * * * *
20836480 TTAAGTTGATCACGCCAT-AAATAGGTTTGTTACTCACTTTGAATGATGTAT
130 TTAAGTTAATCATGCCATCGAA-AGCTTTGTTACTCACTTTAAATGATATAT
* ** * *
20836531 TAATTCATTTATAATCTAATAAATGATTATAAACCAAAATCTTTGGACTTTATGATCAAAACCTA
1 TAATTCATTTATAATCTTATAAATGATTATAAATTAAAATC-TTGGACTTTATGGT-TAAACCTA
* * * * * * *
20836596 TTTTAATTGGATGTTTGCATTCA-GAAATGGGAAGTGGATGTTATCAATTTACTAGAACAA-ACC
64 TTATAATTGGATGTTTGCATT-AGGAAACGTGAAGTGGATGCTATCCATTGACAAGAA-AAGACC
* * * * *
20836659 ATTTTACA-TTAATCATGCCATCGAAAGCTTTGATGCACACTTTCAATG--ACAT
127 ATTTTA-AGTTAATCATGCCATCGAAAGCTTTGTTACTCACTTTAAATGATATAT
* * * * * * * *
20836711 TAATTCATTTATAATCTTATAAATGATTATTAATTGAGATATTTGACCCTTATGGTCAAAAGCTA
1 TAATTCATTTATAATCTTATAAATGATTATAAATTAAAATCTTGGA-CTTTATGGT-TAAACCTA
* * * * * * * ** *
20836776 TCACAATTGGATGTTTGAATT-GAAAAACATGAAGTGGATGTTATCCGTTGACAAGAAAACTCTA
64 TTATAATTGGATGTTTGCATTAG-GAAACGTGAAGTGGATGCTATCCATTGACAAGAAAAGACCA
* * * * * *
20836840 TTTTAAGTTAATGATACCATCGAAAGCTTTATTTCTCACTTTGAACGATATAT
128 TTTTAAGTTAATCATGCCATCGAAAGCTTTGTTACTCACTTTAAATGATATAT
20836893 TAATTCATTTATA
1 TAATTCATTTATA
20836906 TCACTGTGAA
Statistics
Matches: 737, Mismatches: 154, Indels: 57
0.78 0.16 0.06
Matches are distributed among these distances:
179 7 0.01
180 139 0.19
181 230 0.31
182 342 0.46
183 19 0.03
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.37
Consensus pattern (180 bp):
TAATTCATTTATAATCTTATAAATGATTATAAATTAAAATCTTGGACTTTATGGTTAAACCTATT
ATAATTGGATGTTTGCATTAGGAAACGTGAAGTGGATGCTATCCATTGACAAGAAAAGACCATTT
TAAGTTAATCATGCCATCGAAAGCTTTGTTACTCACTTTAAATGATATAT
Found at i:20836486 original size:363 final size:361
Alignment explanation
Indices: 20835805--20836851 Score: 1040
Period size: 363 Copynumber: 2.9 Consensus size: 361
20835795 GGTCGTGACA
* * *
20835805 TAATTCATTTATAATCATATAAATGATTATAAATGAACATCTTTGGACGTGATGATCAAAGCCTA
1 TAATTCATTTATAATCTTATAAATGATTATAAATGAA-ATCTTTGGACTTTATGATCAAAGCCTA
* ** * * * *
20835870 TTATAATTGGATGTTTGCATTTGAAAACAT-AAATGGATGCTATTAAATGACTAA-AACAGACCA
65 TTATAATTGGATGTTTGCATTAG-AAATGTGAAGTGGATGCTATCAATTGAC-AAGAACAAACCA
* * *
20835933 TTTTAAGTTAATCATGCCATCGAACGCTTTGATACAT-GCTTTAAATGATATATTAATTAATTTA
128 TTTTAAGTTAATCATGCCATCGAAAGCTTTGATAC-TCACTTTAAATGATATATTAATTCATTTA
* * *
20835997 TAATCTTATAAATGATTATTAATTGGGATATTTGAACTTTAAGGTTAAAACCTATCAAACTTGGA
192 TAATCTTATAAATGATTATTAATT-GAAAATTTGAACTTTAAGGTTAAAACCTATCAAACTTAGA
* * * *
20836062 TGCTTGAATTGGAAAACGTGAATTGGATGGCATCCATTGACAAGAAAGGACTATTTTAAGTTAAT
256 TGCTTGAATTGGAAAACGTGAAGTGGATGACATCCATTGACAAGAAAAGACCATTTTAAGTTAAT
*** * *
20836127 TGTGACATTGAA-AGCTATGTGACTAAGTTCGAATGATATAT
321 CACGACA-TAAATAGCTATGTGACTAACTTCGAATGATATAT
* * * * * * * *
20836168 TAATTCATTTCTAATCTTATAAATGATTATAAATTGAATTTTTTTGAATTTATGGTTAAAGCTTA
1 TAATTCATTTATAATCTTATAAATGATTATAAA-TGAAATCTTTGGACTTTATGATCAAAGCCTA
* ** *
20836233 TCATAATTGGATGTTTGCATTAGCAAATGTGAAGTGGATGCTATCCCTTGACAAGAAAAAACCAT
65 TTATAATTGGATGTTTGCATTAG-AAATGTGAAGTGGATGCTATCAATTGACAAGAACAAACCAT
* * * * *
20836298 TTTATGTTAATCATGCAATCGAAAACTTTGTTACTCACTCTAAATGATATATTAATTCATTTATA
129 TTTAAGTTAATCATGCCATCGAAAGCTTTGATACTCACTTTAAATGATATATTAATTCATTTATA
* * * **
20836363 ATCTTATAAATGATTATAAATT-AAAATCTTGGACTTTATGGTT-AAACCTTATTGTAA-TTAGA
194 ATCTTATAAATGATTATTAATTGAAAAT-TTGAACTTTAAGGTTAAAACC-TA-TCAAACTTAGA
* * * * * *
20836425 TGTTTGCATTAGG-AAACGTTAAGTGGAT-ACTATCCCTTTACAAGAAAAGACCATTTTAAGTTG
256 TGCTTGAATT-GGAAAACGTGAAGTGGATGAC-ATCCATTGACAAGAAAAGACCATTTTAAGTTA
* * * * * * *
20836488 ATCACGCCATAAATAGGTTTGTTACTCACTTTGAATGATGTAT
319 ATCACGACATAAATAGCTATGTGACTAACTTCGAATGATATAT
* ** *
20836531 TAATTCATTTATAATCTAATAAATGATTATAAACCAAAATCTTTGGACTTTATGATCAAAACCTA
1 TAATTCATTTATAATCTTATAAATGATTATAAA-TGAAATCTTTGGACTTTATGATCAAAGCCTA
* * * * *
20836596 TTTTAATTGGATGTTTGCATTCAGAAATGGGAAGTGGATGTTATCAATTTACTAGAACAAACCAT
65 TTATAATTGGATGTTTGCATT-AGAAATGTGAAGTGGATGCTATCAATTGACAAGAACAAACCAT
* * * *
20836661 TTTACA-TTAATCATGCCATCGAAAGCTTTGATGCACACTTTCAATG--ACATTAATTCATTTAT
129 TTTA-AGTTAATCATGCCATCGAAAGCTTTGATACTCACTTTAAATGATATATTAATTCATTTAT
* * * * * * *
20836723 AATCTTATAAATGATTATTAATTGAGATATTTGACCCTTATGGTCAAAAGCTATCACAA-TTGGA
193 AATCTTATAAATGATTATTAATTGA-AAATTTGAACTTTAAGGTTAAAACCTATCA-AACTTAGA
* * * ** * ** *
20836787 TGTTTGAATTGAAAAACATGAAGTGGATGTTATCCGTTGACAAGAAAACTCTATTTTAAGTTAAT
256 TGCTTGAATTGGAAAACGTGAAGTGGATGACATCCATTGACAAGAAAAGACCATTTTAAGTTAAT
20836852 GATACCATCG
Statistics
Matches: 552, Mismatches: 114, Indels: 37
0.79 0.16 0.05
Matches are distributed among these distances:
361 39 0.07
362 82 0.15
363 320 0.58
364 111 0.20
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.37
Consensus pattern (361 bp):
TAATTCATTTATAATCTTATAAATGATTATAAATGAAATCTTTGGACTTTATGATCAAAGCCTAT
TATAATTGGATGTTTGCATTAGAAATGTGAAGTGGATGCTATCAATTGACAAGAACAAACCATTT
TAAGTTAATCATGCCATCGAAAGCTTTGATACTCACTTTAAATGATATATTAATTCATTTATAAT
CTTATAAATGATTATTAATTGAAAATTTGAACTTTAAGGTTAAAACCTATCAAACTTAGATGCTT
GAATTGGAAAACGTGAAGTGGATGACATCCATTGACAAGAAAAGACCATTTTAAGTTAATCACGA
CATAAATAGCTATGTGACTAACTTCGAATGATATAT
Found at i:20837104 original size:212 final size:213
Alignment explanation
Indices: 20836722--20837113 Score: 475
Period size: 212 Copynumber: 1.8 Consensus size: 213
20836712 AATTCATTTA
* * * *
20836722 TAATCTTATAAATGATTATTAATTGAGATATTTGACCCTTATGGTCAAAAGCTATCACAATTGGA
1 TAATCTTATAAATGATTATAAATTGAAATATTTGACCCTTATCGTCAAAACCTATCACAATTGGA
*** * * * *
20836787 TGTTTGAATTGAAAAACATGAAGTGGATGTTATCCGTTGACAAGAAAACTCTATTTTAAGTTAAT
66 TGTTTGAATTGAAAAACATGAAGTGGATCCCATCAGTTGACAAGAAAACACCATTTTAAATTAAT
* * *
20836852 GATACCATCGAAAGCTTTATTTCTCACTTTGAACGATATATTAATTCATTTATATCACTGTGAAT
131 CATACCATCGAAAGCTTTATTACTCACTTTAAACGATATATTAATTCATTTATATCACTGTGAAT
20836917 GATATATTAATGTTCTAT
196 GATATATTAATGTTCTAT
* * * *
20836935 TAAT-TTATAAATGATTATAAATTGAAATCTTTGGA-CTTTATCGTTAAAACCTATCATAATTGG
1 TAATCTTATAAATGATTATAAATTGAAATATTT-GACCCTTATCGTCAAAACCTATCACAATTGG
* ** * * *
20836998 ATGTTTGCATTGGGAAACATGAAGTGGATCCCATCATTTGGCAAGAAAAGACCATTTTAAATTAA
65 ATGTTTGAATTGAAAAACATGAAGTGGATCCCATCAGTTGACAAGAAAACACCATTTTAAATTAA
** * ** *
20837063 TCA-AGTGATCGAAAGCTTTGTTACTTGCTTTAAATGATATATTAATTCATT
130 TCATA-CCATCGAAAGCTTTATTACTCACTTTAAACGATATATTAATTCATT
20837114 CATAATCCTA
Statistics
Matches: 147, Mismatches: 30, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
211 1 0.01
212 140 0.95
213 6 0.04
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (213 bp):
TAATCTTATAAATGATTATAAATTGAAATATTTGACCCTTATCGTCAAAACCTATCACAATTGGA
TGTTTGAATTGAAAAACATGAAGTGGATCCCATCAGTTGACAAGAAAACACCATTTTAAATTAAT
CATACCATCGAAAGCTTTATTACTCACTTTAAACGATATATTAATTCATTTATATCACTGTGAAT
GATATATTAATGTTCTAT
Found at i:20837418 original size:182 final size:180
Alignment explanation
Indices: 20836914--20837659 Score: 569
Period size: 182 Copynumber: 4.1 Consensus size: 180
20836904 TATCACTGTG
* * * **
20836914 AATGATATATT-AAT-GTTCTATTAATTTATAAATGATTATAAATTGAAATCTTTGGACTTTATC
1 AATGATATATTAAATCATTC-ATAAACTTATAAATGATTATAAATCAAAATCTTTGGACTTTAT-
* * * *
20836977 GTTAAAACCTATCATAATTGGATGTTTGCATTGGGAAACATGAAGTGGATCCCATCATTTGGCAA
64 GTTAAAACCTATTATAATTGGATGTTTGCATTGGGAAACATGAAGTGGATGCTATCATTTGAC-A
* ** * **
20837042 GAAAAGACCATTTTAAATTAATCAAGTGATCGAAAGCTTTGTTACTTGCTTTA
128 GAAAAGACCATTTTAAGTTAATCAAGCCATCGAAAACTTTGTTACTCACTTTA
* * * * *
20837095 AATGATATATTAATTCATTCATAATCCTATTAATGATTATAAATCACAATCTTTGGACTTTATGG
1 AATGATATATTAAATCATTCATAAACTTATAAATGATTATAAATCAAAATCTTTGGACTTTAT-G
* * ** * *
20837160 TTAAAACCTATTGTAACTGGATGTTTAAATTGGGAAACATGAAGTGAATGTTATTCATTGTGA-A
65 TTAAAACCTATTATAATTGGATGTTTGCATTGGGAAACATGAAGTGGATGCTA-TCATT-TGACA
* *
20837224 GAAAAGACCATTTTAAGTTAATCATA-CCATC-AATAACTTTGTTGCTCATTTTA
128 GAAAAGACCATTTTAAGTTAATCA-AGCCATCGAA-AACTTTGTTACTCACTTTA
* *
20837277 AATGATGTATTAAATC-TT-ATAAAAACTTATGAATGATTATAAATCAAAATCTTTGGACTTTAT
1 AATGATATATTAAATCATTCAT--AAACTTATAAATGATTATAAATCAAAATCTTTGGACTTTAT
* * ** * *
20837340 GATTAAAACCTATTATAATTGGATGTTCGCATTCGGAAATGTGAAGTGGATGCTATCAATTCACT
64 G-TTAAAACCTATTATAATTGGATGTTTGCATTGGGAAACATGAAGTGGATGCTATCATTTGAC-
* * * * * * * * * * *
20837405 AGAACACACCATTTTAAGTTTATTACA-TCATTGCAAGCTTTGATACACGCTTTA
127 AGAAAAGACCATTTTAAGTTAATCA-AGCCATCGAAAACTTTGTTACTCACTTTA
* * * * * ** * * * *
20837459 AATGATATATT-AGTCCACTT-ATAATCTTATAAATTACTATTAATTGAGATATTTAGACTTTAA
1 AATGATATATTAAAT-CA-TTCATAAACTTATAAATGATTATAAATCAAAATCTTTGGACTTTAT
* * * * * * * *
20837522 GATCAAAATCTATCATAATTGGAAGTTTGAATTGGAAAACATGAAGTGGATGTTATCCA-TGGAC
64 G-TTAAAACCTATTATAATTGGATGTTTGCATTGGGAAACATGAAGTGGATGCTAT-CATTTGAC
* * * *** * *
20837586 AAGAAAAAACTATTTTAAGTTGATCGTTCCATCGAAAGCTTTGTTACTCACTTTG
127 -AGAAAAGACCATTTTAAGTTAATCAAGCCATCGAAAACTTTGTTACTCACTTTA
* *
20837641 AACGATATATTAATTCATT
1 AATGATATATTAAATCATT
20837660 TATATTACTT
Statistics
Matches: 443, Mismatches: 104, Indels: 36
0.76 0.18 0.06
Matches are distributed among these distances:
180 4 0.01
181 24 0.05
182 395 0.89
183 14 0.03
184 6 0.01
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.37
Consensus pattern (180 bp):
AATGATATATTAAATCATTCATAAACTTATAAATGATTATAAATCAAAATCTTTGGACTTTATGT
TAAAACCTATTATAATTGGATGTTTGCATTGGGAAACATGAAGTGGATGCTATCATTTGACAGAA
AAGACCATTTTAAGTTAATCAAGCCATCGAAAACTTTGTTACTCACTTTA
Found at i:20837445 original size:756 final size:749
Alignment explanation
Indices: 20836157--20837885 Score: 2085
Period size: 756 Copynumber: 2.3 Consensus size: 749
20836147 GACTAAGTTC
* * * * *
20836157 GAATGATATATTAATTCATTTCTAATCTTATAAATGATTATAAATTGAATTTTTTTGAATTTATG
1 GAATGATATATTAATTC-TAT-TAAT-TTATAAATGATTATAAATTGAAATCTTTGGACTTTAT-
* * * * *
20836222 GTTAAAGCTTATCATAATTGGATGTTTGCATTAGCAAATGTGAAGTGGATGCTATCCCTTGACAA
62 GTTAAAACCTATCATAATTGGATGTTTGCATTAGGAAACGTGAAGTGGATGCTAT-CATTGACAA
* * * * * *
20836287 GAAAAAACCATTTTATGTTAATCATGCAATCGAAAACTTTGTTACTCACTCTAAATGATATATTA
126 GAAAAAACCATTTTAAGTTAATCAAG-TATCGAAAGCTTTGTTACTCGCTTTAAATGATATATTA
*
20836352 ATTCATTTATAATCTTATAAATGATTATAAATTAAAATCTTGGACTTTATGGTTAAACCTTATTG
190 ATTCA-TTATAATCTTATAAATGATTATAAATCAAAATCTTGGACTTTATGGTTAAACCTTATTG
* ** * * * *
20836417 TAATTAGATGTTTGCATTAGGAAACGTTAAGTGGATACTATCCCTTTACAAGAAAAGACCATTTT
254 TAACTAGATGTTTAAATTAGGAAACATGAAGTGAATACTATCCATTTACAAGAAAAGACCATTTT
* * ** * * * *
20836482 AAGTTGATCACGCCATAAATAGGTTTGTTACTCACTTTGAATGATGTATTAATTCATTTATAATC
319 AAGTTAATCACACCATAAATAACTTTGTTACTCACTTTAAATGATGTATTAAATCATTTAAAAAC
* *
20836547 TAATAAATGATTATAAACCAAAATCTTTGGACTTTATGATCAAAACCTATTTTAATTGGATGTTT
384 TAATAAATGATTATAAACCAAAATCTTTGGACTTTATGATCAAAACCTATTATAATTGGATGTTC
* *
20836612 GCATTCAGAAATGGGAAGTGGATGTTATCAATTTACTAGAACAAACCATTTTACATTAATCATGC
449 GCATTCAGAAATGGGAAGTGGATGCTATCAATTCACTAGAACAAACCATTTTACATTAATCAT-C
* * * * *
20836677 CATCGAAAGCTTTGATGCACACTTTCAATG-ACATTAATTCATTTATAATCTTATAAATGATTAT
513 CATCGAAAGCTTTGATACACACTTTAAATGAACATTAATCCACTTATAATCTTATAAATGACTAT
* * *
20836741 TAATTGAGATATTT-GACCCTTATGGTCAAAAGCTATCACAATTGGATGTTTGAATTGAAAAACA
578 TAATTGAGATATTTAGA-CCTTAAGATCAAAAGCTATCACAATTGGAAGTTTGAATTGAAAAACA
* * **
20836805 TGAAGTGGATGTTATCCGTTGACAAGAAAACTCTATTTTAAGTTAAT-GATACCATCGAAAGCTT
642 TGAAGTGGATGTTATCCATGGACAAGAAAAAACTATTTTAAGTTAATCG-TACCATCGAAAGCTT
*
20836869 TATTTCTCACTTTGAACGATATATTAATTCATTTATATCACTGT
706 TATTACTCACTTTGAACGATATATTAATTCATTTATATCACTGT
20836913 GAATGATATATTAATGTTCTATTAATTTATAAATGATTATAAATTGAAATCTTTGGACTTTATCG
1 GAATGATATATTAA--TTCTATTAATTTATAAATGATTATAAATTGAAATCTTTGGACTTTAT-G
* * * * *
20836978 TTAAAACCTATCATAATTGGATGTTTGCATTGGGAAACATGAAGTGGATCCCATCATTTGGCAAG
63 TTAAAACCTATCATAATTGGATGTTTGCATTAGGAAACGTGAAGTGGATGCTATCA-TTGACAAG
* * *
20837043 AAAAGACCATTTTAAATTAATCAAGTGATCGAAAGCTTTGTTACTTGCTTTAAATGATATATTAA
127 AAAAAACCATTTTAAGTTAATCAAGT-ATCGAAAGCTTTGTTACTCGCTTTAAATGATATATTAA
* * *
20837108 TTCATTCATAATCCTATTAATGATTATAAATCACAATCTTTGGACTTTATGGTTAAAACC-TATT
191 TTCATT-ATAATCTTATAAATGATTATAAATCAAAATC-TTGGACTTTATGGTT-AAACCTTATT
* * ** * *
20837172 GTAACTGGATGTTTAAATTGGGAAACATGAAGTGAATGTTATTCATTGT-GAAGAAAAGACCATT
253 GTAACTAGATGTTTAAATTAGGAAACATGAAGTGAATACTATCCATT-TACAAGAAAAGACCATT
* * * *
20837236 TTAAGTTAATCATACCATCAATAACTTTGTTGCTCATTTTAAATGATGTATTAAATC-TTATAAA
317 TTAAGTTAATCACACCATAAATAACTTTGTTACTCACTTTAAATGATGTATTAAATCATT-TAAA
* * * *
20837300 AACTTATGAATGATTATAAATCAAAATCTTTGGACTTTATGATTAAAACCTATTATAATTGGATG
381 AACTAATAAATGATTATAAACCAAAATCTTTGGACTTTATGATCAAAACCTATTATAATTGGATG
* * * *
20837365 TTCGCATTCGGAAATGTGAAGTGGATGCTATCAATTCACTAGAACACACCATTTTA-AGTTTATT
446 TTCGCATTCAGAAATGGGAAGTGGATGCTATCAATTCACTAGAACAAACCATTTTACA--TTAAT
* * * * *
20837429 ACAT-CATTGCAAGCTTTGATACACGCTTTAAATGATATATTAGTCCACTTATAATCTTATAAAT
509 -CATCCATCGAAAGCTTTGATACACACTTTAAATGA-ACATTAATCCACTTATAATCTTATAAAT
* * * * *
20837493 TACTATTAATTGAGATATTTAGACTTTAAGATCAAAATCTATCATAATTGGAAGTTTGAATTGGA
572 GACTATTAATTGAGATATTTAGACCTTAAGATCAAAAGCTATCACAATTGGAAGTTTGAATTGAA
* *
20837558 AAACATGAAGTGGATGTTATCCATGGACAAGAAAAAACTATTTTAAGTTGATCGTTCCATCGAAA
637 AAACATGAAGTGGATGTTATCCATGGACAAGAAAAAACTATTTTAAGTTAATCGTACCATCGAAA
* * *
20837623 GCTTTGTTACTCACTTTGAACGATATATTAATTCATTTATATTACTTT
702 GCTTTATTACTCACTTTGAACGATATATTAATTCATTTATATCACTGT
* * * *
20837671 GAATG-T-TTTTAACAATATATTAGTTTATAAATGATTATAAATTGAAATCTTTGGACTTTATGA
1 GAATGATATATT-A-ATTCTATTAATTTATAAATGATTATAAATTGAAATCTTTGGACTTTATG-
* * * *** * * * *
20837734 TGAAAACCTATTATAATTGAATGTTCAAAATCGGAAACGTGAAGTGGATGCTATCAATGACTAGA
63 TTAAAACCTATCATAATTGGATGTTTGCATTAGGAAACGTGAAGTGGATGCTATCATTGACAAGA
* * * * * * *
20837799 ACACACCATTTTAAGTTTATTACA-TATTTGAAAGCTTTGATACACGCTTTAAATGATATATTAA
128 AAAAACCATTTTAAGTTAATCA-AGTA-TCGAAAGCTTTGTTACTCGCTTTAAATGATATATTAA
20837863 TTCACTTATAATCTTATAAATGA
191 TTCA-TTATAATCTTATAAATGA
20837886 CTATTAATTG
Statistics
Matches: 828, Mismatches: 123, Indels: 45
0.83 0.12 0.05
Matches are distributed among these distances:
754 4 0.00
755 252 0.30
756 365 0.44
757 14 0.02
758 190 0.23
759 3 0.00
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38
Consensus pattern (749 bp):
GAATGATATATTAATTCTATTAATTTATAAATGATTATAAATTGAAATCTTTGGACTTTATGTTA
AAACCTATCATAATTGGATGTTTGCATTAGGAAACGTGAAGTGGATGCTATCATTGACAAGAAAA
AACCATTTTAAGTTAATCAAGTATCGAAAGCTTTGTTACTCGCTTTAAATGATATATTAATTCAT
TATAATCTTATAAATGATTATAAATCAAAATCTTGGACTTTATGGTTAAACCTTATTGTAACTAG
ATGTTTAAATTAGGAAACATGAAGTGAATACTATCCATTTACAAGAAAAGACCATTTTAAGTTAA
TCACACCATAAATAACTTTGTTACTCACTTTAAATGATGTATTAAATCATTTAAAAACTAATAAA
TGATTATAAACCAAAATCTTTGGACTTTATGATCAAAACCTATTATAATTGGATGTTCGCATTCA
GAAATGGGAAGTGGATGCTATCAATTCACTAGAACAAACCATTTTACATTAATCATCCATCGAAA
GCTTTGATACACACTTTAAATGAACATTAATCCACTTATAATCTTATAAATGACTATTAATTGAG
ATATTTAGACCTTAAGATCAAAAGCTATCACAATTGGAAGTTTGAATTGAAAAACATGAAGTGGA
TGTTATCCATGGACAAGAAAAAACTATTTTAAGTTAATCGTACCATCGAAAGCTTTATTACTCAC
TTTGAACGATATATTAATTCATTTATATCACTGT
Found at i:20837630 original size:364 final size:364
Alignment explanation
Indices: 20836939--20837653 Score: 792
Period size: 364 Copynumber: 2.0 Consensus size: 364
20836929 TTCTATTAAT
** *
20836939 TTATAAATGATTATAAATTGAAATCTTTGGACTTTATCGTTAAAACCTATCATAATTGGATGTTT
1 TTATAAATGATTATAAATCAAAATCTTTGGACTTTATCGTTAAAACCTATCATAATTGGATGTTC
* * ** *
20837004 GCATTGGGAAACATGAAGTGGATCCCATCATTTGGCAAGAAAAGACCATTTTAAATTAATCAAGT
66 GCATTCGGAAACATGAAGTGGATCCCATCAATTCACAAGAAAACACCATTTTAAATTAATCAAGT
* * ** * * *
20837069 GATCGAAAGCTTTGTTACTTGCTTTAAATGATATATTAATTCATTCATAATCCTATTAATGATTA
131 CATCGAAAGCTTTGATACACGCTTTAAATGATATATTAATCCATTCATAATCCTATAAATGACTA
* * * * * ** * *
20837134 TAAATCACAATCTTTGGACTTTATGGTTAAAACCTATTGTAACTGGATGTTTAAATTGGGAAACA
196 TAAATCACAATATTTAGACTTTAAGATCAAAACCTATCATAACTGGAAGTTTAAATTGGAAAACA
* * ** *
20837199 TGAAGTGAATGTTATTCATTGTGAAGAAAAGACCATTTTAAGTTAATCATACCATCAATAACTTT
261 TGAAGTGAATGTTATCCATGGACAAGAAAAAACCATTTTAAGTTAATCATACCATCAATAACTTT
* * * *
20837264 GTTGCTCATTTTAAATGATGTATTAAATCTTATAAAAAC
326 GTTACTCACTTTAAACGATATATTAAATCTTATAAAAAC
* *
20837303 TTATGAATGATTATAAATCAAAATCTTTGGACTTTAT-GATTAAAACCTATTATAATTGGATGTT
1 TTATAAATGATTATAAATCAAAATCTTTGGACTTTATCG-TTAAAACCTATCATAATTGGATGTT
** * * * * * * *
20837367 CGCATTCGGAAATGTGAAGTGGATGCTATCAATTCACTAGAACACACCATTTTAAGTTTATTACA
65 CGCATTCGGAAACATGAAGTGGATCCCATCAATTCACAAGAAAACACCATTTTAAATTAATCA-A
* * * * *
20837432 -TCATTGCAAGCTTTGATACACGCTTTAAATGATATATTAGTCCACTT-ATAATCTTATAAATTA
129 GTCATCGAAAGCTTTGATACACGCTTTAAATGATATATTAATCCA-TTCATAATCCTATAAATGA
* * * * * *
20837495 CTATTAATTGA-GATATTTAGACTTTAAGATCAAAATCTATCATAATTGGAAGTTTGAATTGGAA
193 CTA-TAAATCACAATATTTAGACTTTAAGATCAAAACCTATCATAACTGGAAGTTTAAATTGGAA
* * * * *
20837559 AACATGAAGTGGATGTTATCCATGGACAAGAAAAAACTATTTTAAGTTGATCGTTCCATCGAA-A
257 AACATGAAGTGAATGTTATCCATGGACAAGAAAAAACCATTTTAAGTTAATCATACCATC-AATA
* *
20837623 GCTTTGTTACTCACTTTGAACGATATATTAA
321 ACTTTGTTACTCACTTTAAACGATATATTAA
20837654 TTCATTTATA
Statistics
Matches: 284, Mismatches: 62, Indels: 10
0.80 0.17 0.03
Matches are distributed among these distances:
363 1 0.00
364 273 0.96
365 10 0.04
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.37
Consensus pattern (364 bp):
TTATAAATGATTATAAATCAAAATCTTTGGACTTTATCGTTAAAACCTATCATAATTGGATGTTC
GCATTCGGAAACATGAAGTGGATCCCATCAATTCACAAGAAAACACCATTTTAAATTAATCAAGT
CATCGAAAGCTTTGATACACGCTTTAAATGATATATTAATCCATTCATAATCCTATAAATGACTA
TAAATCACAATATTTAGACTTTAAGATCAAAACCTATCATAACTGGAAGTTTAAATTGGAAAACA
TGAAGTGAATGTTATCCATGGACAAGAAAAAACCATTTTAAGTTAATCATACCATCAATAACTTT
GTTACTCACTTTAAACGATATATTAAATCTTATAAAAAC
Found at i:20837898 original size:391 final size:393
Alignment explanation
Indices: 20837303--20838124 Score: 1371
Period size: 391 Copynumber: 2.1 Consensus size: 393
20837293 TTATAAAAAC
* ** * *
20837303 TTATGAATGATTATAAATCAAAATCTTTGGACTTTATGATTAAAACCTATTATAATTGGATGTTC
1 TTATAAATGATTATAAATTGAAATCTTTGGACTTTATGATGAAAACCTATTATAATTGAATGTTC
** * *
20837368 GCATTCGGAAATGTGAAGTGGATGCTATCAATTCACTAGAACACACCATTTTAAGTTTATTACAT
66 AAAATCGGAAACGTGAAGTGGATGCTATCAATTCACTAGAACACACCATTTTAAGTTTATTACAT
* * *
20837433 CATTGCAAGCTTTGATACACGCTTTAAATGATATATTAGTCCACTTATAATCTTATAAATTACTA
131 CATTGAAAGCTTTGATACACGCTTTAAATGATATATTAATCCACTTATAATCTTATAAATGACTA
*
20837498 TTAATTGAGATATTTAGACTTTAAGATCAAAATCTATCATAATTGGAAGTTTGAATTGGAAAACA
196 TTAATTGAGATATTTAGACTTTAAGATCAAAATCTATCATAATTGGAAGTTTGAATTGCAAAACA
* *
20837563 TGAAGTGGATGTTATCCATGGACAAGAAAAAACTATTTTAAGTTGATCGTTCCATCGAAAGCTTT
261 TGAAATGGATGCTATCCATGGACAAGAAAAAACTATTTTAAGTTGATCGTTCCATCGAAAGCTTT
* * *
20837628 GTTACTCACTTTGAACGATATATTAATTCATTTATATTACTTTGAATG-TTTTTAACAATATATT
326 GTTACTCACTTTGAACGATATATTAATTCATTTATATCACTTTGAATGATTATTAACAAAATATT
*
20837692 AGT
391 AAT
20837695 TTATAAATGATTATAAATTGAAATCTTTGGACTTTATGATGAAAACCTATTATAATTGAATGTTC
1 TTATAAATGATTATAAATTGAAATCTTTGGACTTTATGATGAAAACCTATTATAATTGAATGTTC
*
20837760 AAAATCGGAAACGTGAAGTGGATGCTATCAA-TGACTAGAACACACCATTTTAAGTTTATTACAT
66 AAAATCGGAAACGTGAAGTGGATGCTATCAATTCACTAGAACACACCATTTTAAGTTTATTACAT
*
20837824 -ATTTGAAAGCTTTGATACACGCTTTAAATGATATATTAATTCACTTATAATCTTATAAATGACT
131 CA-TTGAAAGCTTTGATACACGCTTTAAATGATATATTAATCCACTTATAATCTTATAAATGACT
*
20837888 ATTAATTGAGATATTTAGACTTTAAGATCAAAATCTATCATAATTGGATGTTTGAATTGCAAAAC
195 ATTAATTGAGATATTTAGACTTTAAGATCAAAATCTATCATAATTGGAAGTTTGAATTGCAAAAC
* * *
20837953 ATGAAATGGATGCTATCCATTGACAAGAAAAGACTATTTTAGGTTGATCGTTCCATCGAAAGCTT
260 ATGAAATGGATGCTATCCATGGACAAGAAAAAACTATTTTAAGTTGATCGTTCCATCGAAAGCTT
* *
20838018 TGTTACTTACTTTGAATGATATATTAATTCATTTATATCACTTTGAATGATTATTAACAAAATAT
325 TGTTACTCACTTTGAACGATATATTAATTCATTTATATCACTTTGAATGATTATTAACAAAATAT
20838083 TAAT
390 TAAT
20838087 TTATAAATGATTATAAATTGAAATCTTTGGACTTTATG
1 TTATAAATGATTATAAATTGAAATCTTTGGACTTTATG
20838125 GTTAAAACAT
Statistics
Matches: 401, Mismatches: 27, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
390 1 0.00
391 259 0.65
392 141 0.35
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.38
Consensus pattern (393 bp):
TTATAAATGATTATAAATTGAAATCTTTGGACTTTATGATGAAAACCTATTATAATTGAATGTTC
AAAATCGGAAACGTGAAGTGGATGCTATCAATTCACTAGAACACACCATTTTAAGTTTATTACAT
CATTGAAAGCTTTGATACACGCTTTAAATGATATATTAATCCACTTATAATCTTATAAATGACTA
TTAATTGAGATATTTAGACTTTAAGATCAAAATCTATCATAATTGGAAGTTTGAATTGCAAAACA
TGAAATGGATGCTATCCATGGACAAGAAAAAACTATTTTAAGTTGATCGTTCCATCGAAAGCTTT
GTTACTCACTTTGAACGATATATTAATTCATTTATATCACTTTGAATGATTATTAACAAAATATT
AAT
Found at i:20844201 original size:181 final size:180
Alignment explanation
Indices: 20843556--20844783 Score: 1111
Period size: 181 Copynumber: 6.8 Consensus size: 180
20843546 AATTATGGTT
* * * * * ** *
20843556 AAAACATATTGTAATTGGATGTGTTGCATTGGGAAACATGAAGTGGATGTTAT-TGTTG-CAAAA
1 AAAACCTATTATAATTAGATGT-TTGAATT-GGAAACATGAAGTGGATGCTATCAATTGACAAGA
* ** * *
20843619 AAAGACTATTTTAAGTTAATCATGCTACT-AGTAGCTTTGTTACTCACTTT-AATGATGTATTAA
64 AAAGAC-ATTTTAAGTTAATCATGCCA-TAAAAAGCTTTGTTACTAACTTTAAATGATATATTAA
* * * *
20843682 TTCATTTCTAATCTTATAAATGATTATAAA-TGTACATATTTTGACTTGATGATC
127 TTCATTTATAATCTTATAAATGATTATAAATTG-AAATATTTGGACTTTATGATC
* * * *
20843736 AAAGTCTATTATTATAATTGGATGTTTGAATTTGGAAACTTGAAGTGGATGCTATCAATTGACTA
1 AAA-AC--CTATTATAATTAGATGTTTGAA-TTGGAAACATGAAGTGGATGCTATCAATTGAC-A
* * * ** *
20843801 A-AACAGACCATGTTAAGTTAATCATGCCATCAAAAGCTTTAATAC-ACGCTTTAAATGATATAT
61 AGAAAAGA-CATTTTAAGTTAATCATGCCATAAAAAGCTTTGTTACTA-ACTTTAAATGATATAT
* ** ** * *
20843864 TAATTCATTTATAATCTTATAAATGATTATTAATTGGGATATTTATACTTTATGGTT
124 TAATTCATTTATAATCTTATAAATGATTATAAATTGAAATATTTGGACTTTATGATC
* ** * *** * *
20843921 AAAACCTATCATAATT-GAATGTTTGAATTGGAATACATGAACCGAACAATATCCATTGACTAGA
1 AAAACCTATTATAATTAG-ATGTTTGAATTGGAA-ACATGAAGTGGATGCTATCAATTGACAAGA
** * * * **
20843985 AAAGACTATTTTAAGTTAATTGTGCCATCAAAAGCTTTGTGACTAAGTTTAAACAATATATTAAT
64 AAAGAC-ATTTTAAGTTAATCATGCCATAAAAAGCTTTGTTACTAACTTTAAATGATATATTAAT
* * * * *
20844050 TCATTTCTAATCTTATAAATGATTATAAATTGAAATCTTTGGACTCTGTG-TT
128 TCATTTATAATCTTATAAATGATTATAAATTGAAATATTTGGACTTTATGATC
* * * * **
20844102 AAAACCCATCATAATTAGATGTTTGTATTGGCAAACATGAAGTGGATGTTATCCCTTGACAAGAA
1 AAAACCTATTATAATTAGATGTTTGAATTGG-AAACATGAAGTGGATGCTATCAATTGACAAGAA
** *
20844167 AAGATCATTTTAAGTTAATCATGTGATAAAAAGCTTTGTTACTAACTCTAAATGATATATTAATT
65 AAGA-CATTTTAAGTTAATCATGCCATAAAAAGCTTTGTTACTAACTTTAAATGATATATTAATT
* * *
20844232 CATTTATAATCTTATAAATGATTATAAA-TCAAA-ATCTTGGACTTTACGATT
129 CATTTATAATCTTATAAATGATTATAAATTGAAATAT-TTGGACTTTATGATC
* * * * *
20844283 AAACCCTATTGTAATTGGATGTTTGCATTAGGAAACTTGAAGTGGATGCTATCAATTGACAAGAA
1 AAAACCTATTATAATTAGATGTTTGAATT-GGAAACATGAAGTGGATGCTATCAATTGACAAGAA
* * * *
20844348 AAGACCATTTTAAGTTAATCACGCCATAAATAGCTTTGTTACTCACTTTAAATGATGTATTAATT
65 AAGA-CATTTTAAGTTAATCATGCCATAAAAAGCTTTGTTACTAACTTTAAATGATATATTAATT
* ** *
20844413 CATTTATAATCTAATAAATGATTATAAATCAAAAAATTTGGACTTTATGATC
129 CATTTATAATCTTATAAATGATTATAAATTGAAATATTTGGACTTTATGATC
* * * * * *
20844465 AAAACCTATTATAATTAAATGTTTGCATTCGAAA-ATGGGAAGTGCAT-CTATCAATTTACTAGA
1 AAAACCTATTATAATTAGATGTTTGAATTGGAAACAT--GAAGTGGATGCTATCAATTGACAAGA
* ** * *
20844528 ACAA-ATCATTTT-AGTTTAATCATCCCATTGAAAGCTTTGATA-TACGCTTTAAATGATATATT
64 A-AAGA-CATTTTAAG-TTAATCATGCCATAAAAAGCTTTGTTACTA-ACTTTAAATGATATATT
* * * *
20844590 AATTCATTTATTATCTTATAAATGATTATTAATTTACATATTTGGACTTTATGATC
125 AATTCATTTATAATCTTATAAATGATTATAAATTGAAATATTTGGACTTTATGATC
* * * * *
20844646 AAAACCTATGATAATTAAATGTTTGAATTGGAAAACATAAAGTGGATGTTATCCATTGACAAGAA
1 AAAACCTATTATAATTAGATGTTTGAATTGG-AAACATGAAGTGGATGCTATCAATTGACAAGAA
** ** * * * * *
20844711 AAGACTATTTTAAGTTAATCGCGCCATCGAAAGCTTTGTTGCTCACTTTGAACGGTATATTAATT
65 AAGAC-ATTTTAAGTTAATCATGCCATAAAAAGCTTTGTTACTAACTTTAAATGATATATTAATT
20844776 CATTTATA
129 CATTTATA
20844784 TCACTTTGAA
Statistics
Matches: 856, Mismatches: 155, Indels: 72
0.79 0.14 0.07
Matches are distributed among these distances:
179 1 0.00
180 20 0.02
181 429 0.50
182 276 0.32
183 29 0.03
184 39 0.05
185 60 0.07
186 2 0.00
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.38
Consensus pattern (180 bp):
AAAACCTATTATAATTAGATGTTTGAATTGGAAACATGAAGTGGATGCTATCAATTGACAAGAAA
AGACATTTTAAGTTAATCATGCCATAAAAAGCTTTGTTACTAACTTTAAATGATATATTAATTCA
TTTATAATCTTATAAATGATTATAAATTGAAATATTTGGACTTTATGATC
Found at i:20844481 original size:363 final size:362
Alignment explanation
Indices: 20843548--20844783 Score: 1271
Period size: 363 Copynumber: 3.4 Consensus size: 362
20843538 GTCGTGACAA
* * * * **
20843548 TTATGGTTAAAACATATTGTAATTGGATGTGTTGCATTGGGAAACATGAAGTGGATGTTAT-TGT
1 TTATGATTAAAACCTATTGTAATTGAATGT-TTGAATT-GGAAACATGAAGTGGATGTTATCCAT
* * * ** *
20843612 TG-CAAAAAAAGACTATTTTAAGTTAATCATGCTA-CTAGTAGCTTTGTTACTCACTTT-AATGA
64 TGACAAGAAAAGACTATTTTAAGTTAATCACGCCATC-AAAAGCTTTGTTACTCACTTTAAACGA
* * ** * * *
20843674 TGTATTAATTCATTTCTAATCTTATAAATGATTATAAATGTACATATTTTGACTTGATGATCAAA
128 TATATTAATTCATTTATAATCTTATAAATGATTATAAATCAAAATATTTGGACTTTATGATCAAA
* * * *
20843739 GTCTATTATTATAATTGGATGTTTGAATTTGGAAACTTGAAGTGGATGCTATCAATTGACTAA-A
193 -AC--CTATTATAATTAGATGTTTGAA-TTGGAAACATGAAGTGGATGCTATCAATTGAC-AAGA
* * * * *
20843803 ACAGACCATGTTAAGTTAATCATGCCATCAAAAGCTTTAATAC-ACGCTTTAAATGATATATTAA
253 AAAGATCATTTTAAGTTAATCATGCCATAAAAAGCTTTGATACTACGCTTTAAATGATATATTAA
** **
20843867 TTCATTTATAATCTTATAAATGATTATTAATTGGGATATTTATACT
318 TTCATTTATAATCTTATAAATGATTATTAATT-CAATATTTGGACT
* ** ** * ***
20843913 TTATGGTTAAAACCTATCATAATTGAATGTTTGAATTGGAATACATGAACCGAACAATATCCATT
1 TTATGATTAAAACCTATTGTAATTGAATGTTTGAATTGGAA-ACATGAAGTGGATGTTATCCATT
* *** * * * *
20843978 GACTAGAAAAGACTATTTTAAGTTAATTGTGCCATCAAAAGCTTTGTGACTAAGTTTAAACAATA
65 GACAAGAAAAGACTATTTTAAGTTAATCACGCCATCAAAAGCTTTGTTACTCACTTTAAACGATA
* ** * * * *
20844043 TATTAATTCATTTCTAATCTTATAAATGATTATAAATTGAAATCTTTGGACTCTGTG-TTAAAAC
130 TATTAATTCATTTATAATCTTATAAATGATTATAAATCAAAATATTTGGACTTTATGATCAAAAC
* * * * **
20844107 CCATCATAATTAGATGTTTGTATTGGCAAACATGAAGTGGATGTTATCCCTTGACAAGAAAAGAT
195 CTATTATAATTAGATGTTTGAATTGG-AAACATGAAGTGGATGCTATCAATTGACAAGAAAAGAT
** * * *
20844172 CATTTTAAGTTAATCATGTGATAAAAAGCTTTGTTACTA-ACTCTAAATGATATATTAATTCATT
259 CATTTTAAGTTAATCATGCCATAAAAAGCTTTGATACTACGCTTTAAATGATATATTAATTCATT
* *
20844236 TATAATCTTATAAATGATTA-TAAATCAAAATCTTGGACT
324 TATAATCTTATAAATGATTATTAATTCAATAT-TTGGACT
* * * * * * *
20844275 TTACGATTAAACCCTATTGTAATTGGATGTTTGCATTAGGAAACTTGAAGTGGATGCTATCAATT
1 TTATGATTAAAACCTATTGTAATTGAATGTTTGAATT-GGAAACATGAAGTGGATGTTATCCATT
* *
20844340 GACAAGAAAAGACCATTTTAAGTTAATCACGCCAT-AAATAGCTTTGTTACTCACTTTAAATGAT
65 GACAAGAAAAGACTATTTTAAGTTAATCACGCCATCAAA-AGCTTTGTTACTCACTTTAAACGAT
* * *
20844404 GTATTAATTCATTTATAATCTAATAAATGATTATAAATCAAAAAATTTGGACTTTATGATCAAAA
129 ATATTAATTCATTTATAATCTTATAAATGATTATAAATCAAAATATTTGGACTTTATGATCAAAA
* * * * * *
20844469 CCTATTATAATTAAATGTTTGCATTCGAAA-ATGGGAAGTGCAT-CTATCAATTTACTAGAACAA
194 CCTATTATAATTAGATGTTTGAATTGGAAACAT--GAAGTGGATGCTATCAATTGACAAGAA-AA
* **
20844532 -ATCATTTT-AGTTTAATCATCCCATTGAAAGCTTTGATA-TACGCTTTAAATGATATATTAATT
256 GATCATTTTAAG-TTAATCATGCCATAAAAAGCTTTGATACTACGCTTTAAATGATATATTAATT
* *
20844594 CATTTATTATCTTATAAATGATTATTAATTTACATATTTGGACT
320 CATTTATAATCTTATAAATGATTATTAATTCA-ATATTTGGACT
* * *
20844638 TTATGATCAAAACCTA-TGATAATTAAATGTTTGAATTGGAAAACATAAAGTGGATGTTATCCAT
1 TTATGATTAAAACCTATTG-TAATTGAATGTTTGAATTGG-AAACATGAAGTGGATGTTATCCAT
* * * * *
20844702 TGACAAGAAAAGACTATTTTAAGTTAATCGCGCCATCGAAAGCTTTGTTGCTCACTTTGAACGGT
64 TGACAAGAAAAGACTATTTTAAGTTAATCACGCCATCAAAAGCTTTGTTACTCACTTTAAACGAT
20844767 ATATTAATTCATTTATA
129 ATATTAATTCATTTATA
20844784 TCACTTTGAA
Statistics
Matches: 712, Mismatches: 137, Indels: 46
0.80 0.15 0.05
Matches are distributed among these distances:
361 12 0.02
362 249 0.35
363 296 0.42
364 24 0.03
365 30 0.04
366 47 0.07
367 54 0.08
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.38
Consensus pattern (362 bp):
TTATGATTAAAACCTATTGTAATTGAATGTTTGAATTGGAAACATGAAGTGGATGTTATCCATTG
ACAAGAAAAGACTATTTTAAGTTAATCACGCCATCAAAAGCTTTGTTACTCACTTTAAACGATAT
ATTAATTCATTTATAATCTTATAAATGATTATAAATCAAAATATTTGGACTTTATGATCAAAACC
TATTATAATTAGATGTTTGAATTGGAAACATGAAGTGGATGCTATCAATTGACAAGAAAAGATCA
TTTTAAGTTAATCATGCCATAAAAAGCTTTGATACTACGCTTTAAATGATATATTAATTCATTTA
TAATCTTATAAATGATTATTAATTCAATATTTGGACT
Found at i:20844778 original size:544 final size:545
Alignment explanation
Indices: 20843574--20844783 Score: 1367
Period size: 544 Copynumber: 2.2 Consensus size: 545
20843564 TTGTAATTGG
* * ** *
20843574 ATGTGTTGCATTGGGAAACATGAAGTGGATGTTAT-TGTTG-CAAAAAAAGACTATTTTAAGTTA
1 ATGT-TTGAATTGGAAAACATGAAGTGGATGTTATCCATTGACAAGAAAAGACTATTTTAAGTTA
* ** * *
20843637 ATCATGCTA-CTAGTAGCTTTGTTACTCACTTTAATGATGTATTAATTCATTTCTAATCTTATAA
65 ATCATGCCATC-AAAAGCTTTGTTACTCACTTTAATGATATATTAATTCATTTATAATCTTATAA
* * * * *
20843701 ATGATTATAAATGTACATATTTTGACTTGATGATCAAAGTCTATTATTATAATTGGATGTTTGAA
129 ATGATTATAAATGCACAAATTTGGACTTGACGATCAAAG-CTACTATTATAATTGGATGTTTGAA
* * *
20843766 TTTGGAAACTTGAAGTGGATGCTATCAATTGACTAAAACAGACCATGTTAAGTTAATCATGCCAT
193 TTAGGAAACTTGAAGTGGATGCTATCAATTGACTAAAAAAGACCATGTTAAGTTAATCACGCCAT
* * *
20843831 CAAAAGCTTTAATACACGCTTTAAATGATATATTAATTCATTTATAATCTTATAAATGATTATTA
258 CAAAAGCTTTAATACACACTTTAAATGATATATTAATTCATTTATAATCTAATAAATGATTATAA
**** * * * * * *
20843896 ATTGGGATATTTATACTTTATGGTTAAAACCTATCATAATTGAATGTTTGAATTGGAATACATGA
323 ATCAAAAAATTTAGACTTTATGATCAAAACCTATCATAATTAAATGTTTGAATTCGAATACATGA
* ** *
20843961 ACCGAACAATATCCATTGACTAGAAAAGACTATTTTAAGTTAATTGTGCCATCAAAAGCTTTGTG
388 A-CGAACAATATCAATTGACTAGAAAAGACTATTTTAAGTTAATCATCCCATCAAAAGCTTTGTG
* *
20844026 ACTAAGTTTAAACAATATATTAATTCATTTCTAATCTTATAAATGATTATAAATTGAAATCTTTG
452 ACTAAGTTTAAACAATATATTAATTCATTTATAATCTTATAAATGATTATAAATTGAAATATTTG
* * *
20844091 GACTCTGTGTTAAAACCCATCATAATTAG
517 GACTCTATGTCAAAACCCATCATAATTAA
* * *
20844120 ATGTTTGTATTGGCAAACATGAAGTGGATGTTATCCCTTGACAAGAAAAGA-TCATTTTAAGTTA
1 ATGTTTGAATTGGAAAACATGAAGTGGATGTTATCCATTGACAAGAAAAGACT-ATTTTAAGTTA
** * * *
20844184 ATCATGTGATAAAAAGCTTTGTTACTAACTCTAAATGATATATTAATTCATTTATAATCTTATAA
65 ATCATGCCATCAAAAGCTTTGTTACTCACT-TTAATGATATATTAATTCATTTATAATCTTATAA
* * * * *
20844249 ATGATTATAAAT-CA-AAATCTTGGACTTTACGATTAAA-C-CCTATTGTAATTGGATGTTTGCA
129 ATGATTATAAATGCACAAAT-TTGGACTTGACGATCAAAGCTACTATTATAATTGGATGTTTGAA
*
20844310 TTAGGAAACTTGAAGTGGATGCTATCAATTGAC-AAGAAAAGACCATTTTAAGTTAATCACGCCA
193 TTAGGAAACTTGAAGTGGATGCTATCAATTGACTAA-AAAAGACCATGTTAAGTTAATCACGCCA
** * *
20844374 T-AAATAGCTTTGTTACTCACTTTAAATGATGTATTAATTCATTTATAATCTAATAAATGATTAT
257 TCAAA-AGCTTTAATACACACTTTAAATGATATATTAATTCATTTATAATCTAATAAATGATTAT
* * *
20844438 AAATCAAAAAATTTGGACTTTATGATCAAAACCTATTATAATTAAATGTTTGCATTCGAA-A-AT
321 AAATCAAAAAATTTAGACTTTATGATCAAAACCTATCATAATTAAATGTTTGAATTCGAATACAT
** * * **
20844501 GGGAA-GTGCATCTATCAATTTACTAGAACAA-A-TCATTTT-AGTTTAATCATCCCATTGAAAG
386 --GAACGAACA-ATATCAATTGACTAGAA-AAGACT-ATTTTAAG-TTAATCATCCCATCAAAAG
* ** * * *
20844562 CTTTGAT-A-TACGCTTTAAATGATATATTAATTCATTTATTATCTTATAAATGATTATTAATTT
445 CTTTG-TGACTAAG-TTTAAACAATATATTAATTCATTTATAATCTTATAAATGATTATAAATTG
* * * *
20844625 ACATATTTGGACTTTATGATCAAAACCTATGATAATTAA
508 AAATATTTGGACTCTATG-TCAAAACCCATCATAATTAA
*
20844664 ATGTTTGAATTGGAAAACATAAAGTGGATGTTATCCATTGACAAGAAAAGACTATTTTAAGTTAA
1 ATGTTTGAATTGGAAAACATGAAGTGGATGTTATCCATTGACAAGAAAAGACTATTTTAAGTTAA
** * * * *
20844729 TCGCGCCATCGAAAGCTTTGTTGCTCACTTTGAACGGTATATTAATTCATTTATA
66 TCATGCCATCAAAAGCTTTGTTACTCACTTT-AATGATATATTAATTCATTTATA
20844784 TCACTTTGAA
Statistics
Matches: 557, Mismatches: 88, Indels: 40
0.81 0.13 0.06
Matches are distributed among these distances:
542 11 0.02
543 105 0.19
544 299 0.54
545 30 0.05
546 11 0.02
547 58 0.10
548 43 0.08
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.38
Consensus pattern (545 bp):
ATGTTTGAATTGGAAAACATGAAGTGGATGTTATCCATTGACAAGAAAAGACTATTTTAAGTTAA
TCATGCCATCAAAAGCTTTGTTACTCACTTTAATGATATATTAATTCATTTATAATCTTATAAAT
GATTATAAATGCACAAATTTGGACTTGACGATCAAAGCTACTATTATAATTGGATGTTTGAATTA
GGAAACTTGAAGTGGATGCTATCAATTGACTAAAAAAGACCATGTTAAGTTAATCACGCCATCAA
AAGCTTTAATACACACTTTAAATGATATATTAATTCATTTATAATCTAATAAATGATTATAAATC
AAAAAATTTAGACTTTATGATCAAAACCTATCATAATTAAATGTTTGAATTCGAATACATGAACG
AACAATATCAATTGACTAGAAAAGACTATTTTAAGTTAATCATCCCATCAAAAGCTTTGTGACTA
AGTTTAAACAATATATTAATTCATTTATAATCTTATAAATGATTATAAATTGAAATATTTGGACT
CTATGTCAAAACCCATCATAATTAA
Found at i:20846973 original size:37 final size:37
Alignment explanation
Indices: 20846922--20846999 Score: 129
Period size: 37 Copynumber: 2.1 Consensus size: 37
20846912 CATATGCATT
* * *
20846922 CATCATCATGTGTGCAGTCCCTATTCGCACACTTCAA
1 CATCATCATATGTGCACTCCCTACTCGCACACTTCAA
20846959 CATCATCATATGTGCACTCCCTACTCGCACACTTCAA
1 CATCATCATATGTGCACTCCCTACTCGCACACTTCAA
20846996 CATC
1 CATC
20847000 CTCACACAAC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.26, C:0.36, G:0.10, T:0.28
Consensus pattern (37 bp):
CATCATCATATGTGCACTCCCTACTCGCACACTTCAA
Found at i:20851351 original size:26 final size:26
Alignment explanation
Indices: 20851291--20851352 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 26
20851281 ACCATATACC
*
20851291 CATCATCAACATGCACACCATCCAAT
1 CATCATCATCATGCACACCATCCAAT
* *
20851317 CATCATCATCATGCACATCATCCCAT
1 CATCATCATCATGCACACCATCCAAT
*
20851343 CATTATCATC
1 CATCATCATC
20851353 TCATATGCAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.34, C:0.37, G:0.03, T:0.26
Consensus pattern (26 bp):
CATCATCATCATGCACACCATCCAAT
Found at i:20851433 original size:42 final size:42
Alignment explanation
Indices: 20851372--20851513 Score: 196
Period size: 42 Copynumber: 3.4 Consensus size: 42
20851362 ACAGCTTATG
* * * *
20851372 CACATATAGCCGGGTCAGCAACGACGTATGTGCACTCCCACT
1 CACACATAGCCGGGTCAGCAACGGCTTATGTGCACTCCTACT
20851414 CACACATAGCCGGGTCAGCAACGGCTTATGTGCACTCCTACT
1 CACACATAGCCGGGTCAGCAACGGCTTATGTGCACTCCTACT
**
20851456 -AGCACATAGCCGGGTCATTAACGGCTTATGTGCACTCCTACT
1 CA-CACATAGCCGGGTCAGCAACGGCTTATGTGCACTCCTACT
* *
20851498 CGCACATAGTCGGGTC
1 CACACATAGCCGGGTC
20851514 CAAATCAACA
Statistics
Matches: 90, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
41 1 0.01
42 89 0.99
ACGTcount: A:0.24, C:0.32, G:0.23, T:0.22
Consensus pattern (42 bp):
CACACATAGCCGGGTCAGCAACGGCTTATGTGCACTCCTACT
Found at i:20856539 original size:26 final size:26
Alignment explanation
Indices: 20856479--20856540 Score: 106
Period size: 26 Copynumber: 2.4 Consensus size: 26
20856469 ACCATATACC
*
20856479 CATCATCAACATGCACACCATCCCAT
1 CATCATCATCATGCACACCATCCCAT
*
20856505 CATCATCATCATGCACATCATCCCAT
1 CATCATCATCATGCACACCATCCCAT
20856531 CATCATCATC
1 CATCATCATC
20856541 TCATACGCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.32, C:0.40, G:0.03, T:0.24
Consensus pattern (26 bp):
CATCATCATCATGCACACCATCCCAT
Found at i:20856630 original size:42 final size:42
Alignment explanation
Indices: 20856560--20856701 Score: 205
Period size: 42 Copynumber: 3.4 Consensus size: 42
20856550 ACAGCTTACG
*
20856560 CGCATATAGCCGGGTCAGCAACGGCTTATGTGCACTCCCACT
1 CGCACATAGCCGGGTCAGCAACGGCTTATGTGCACTCCCACT
* **
20856602 CACACATAGTTGGGTCAGCAACGGCTTATGTGCACTCCTC-CT
1 CGCACATAGCCGGGTCAGCAACGGCTTATGTGCACTCC-CACT
* * *
20856644 CGCACATAGCCGTGTCAGCAATGGCTTATGTGCACTCCTACT
1 CGCACATAGCCGGGTCAGCAACGGCTTATGTGCACTCCCACT
20856686 CGCACATAGCCGGGTC
1 CGCACATAGCCGGGTC
20856702 CAAATCAACA
Statistics
Matches: 87, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
42 86 0.99
43 1 0.01
ACGTcount: A:0.21, C:0.32, G:0.23, T:0.23
Consensus pattern (42 bp):
CGCACATAGCCGGGTCAGCAACGGCTTATGTGCACTCCCACT
Found at i:20861857 original size:2 final size:2
Alignment explanation
Indices: 20861850--20861906 Score: 107
Period size: 2 Copynumber: 29.0 Consensus size: 2
20861840 NNNNNNNNNN
20861850 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
20861892 AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT
20861907 GTGTGTATAT
Statistics
Matches: 54, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 53 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:20861986 original size:42 final size:41
Alignment explanation
Indices: 20861939--20862100 Score: 200
Period size: 42 Copynumber: 3.9 Consensus size: 41
20861929 GTAACGATAT
*
20861939 TGACCCGGCTATGTGCGAGTAGGAGTGTGCATAAGTCGATGC
1 TGACCCGGCTATGTGCGAGTAGGAGTGGGCATAAG-CGATGC
** *
20861981 TGACCCGGCTATGTGCGAGGGGGAGTGCGCATAAGCCGATGC
1 TGACCCGGCTATGTGCGAGTAGGAGTGGGCATAAG-CGATGC
* * *
20862023 TGACCCAGCTATGTGCGAAG-GGGAGTGGGTATAAGCGGATGC
1 TGACCCGGCTATGTGCG-AGTAGGAGTGGGCATAAGC-GATGC
* *
20862065 TGACCCGACTATGTACGAGTAGGAGTGGGCATAAGC
1 TGACCCGGCTATGTGCGAGTAGGAGTGGGCATAAGC
20862101 TGATTGTCAA
Statistics
Matches: 105, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
41 3 0.03
42 100 0.95
43 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.38, T:0.20
Consensus pattern (41 bp):
TGACCCGGCTATGTGCGAGTAGGAGTGGGCATAAGCGATGC
Found at i:20865195 original size:2 final size:2
Alignment explanation
Indices: 20865190--20865223 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
20865180 ATGGTGATGG
* *
20865190 AT AT AT AT AT AT AT AT AT AT AC AT AT AT AG AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
20865224 GTGTGTTATA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (2 bp):
AT
Found at i:20866703 original size:169 final size:169
Alignment explanation
Indices: 20866131--20866824 Score: 559
Period size: 170 Copynumber: 4.1 Consensus size: 169
20866121 GGTCGTGACA
* * * * * * *
20866131 ATTTTGATTTAAAATCATTTAT-ATATCATAAAATCATTTAAAGCGAATAACAACGCTTTCAAAG
1 ATTTTGATTTAAAATCAATTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAAG
* * * ** * * * * *
20866195 GGATGAGT-AGCTATAAATAGATTTTTCTTGTCAATGGATGACATCCACCTCACATTTCCCAATG
66 TG-CGAGTGA-CTACAAAT-GAACTTTCTTGTCAATGGATGGCATCCACTTAACATTTCTCGATG
* * * * **
20866259 CAAACATCTAAGTGTAATATATTTGAACCAAAAACCAAAAAG
128 CAAACATCCAATTATAATATTTTTGAACCAAAAATGAAAAAG
** * * *
20866301 ATTTTGATTTAAAATC-ATATATAAGATTATAAAACCATTT-AAGTAAGTAACAGGGCATTGGAA
1 ATTTTGATTTAAAATCAAT-TATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAA
* * * * * * * *
20866364 CGCT-TGAATGAC-ACTAAATGGACTTTTCTTGTCAATGAAAGGCATTCGCTTCACATTTCTCGA
65 -G-TGCGAGTGACTAC-AAATGAAC-TTTCTTGTCAATGGATGGCATCCACTTAACATTTCTCGA
* ** * *
20866427 TGCAAACACCCAAAAATAATCTTTTTGAACCTAAAATGAAAAAG
126 TGCAAACATCCAATTATAATATTTTTGAACCAAAAATGAAAAAG
* * * **
20866471 ATTTCGATTTAAAATCAATTATAATATTATAAAACCATTTAAAGCCAGGGACAAGGCTTTCGAAG
1 ATTTTGATTTAAAATCAATTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAAG
* * * *
20866536 TGCGAGTGGCTACAAATGAACTTTCTTGTCAATGGATGGTATCCACTTAACATTTCTCGATGTAC
66 TGCGAGTGACTACAAATGAACTTTCTTGTCAATGGATGGCATCCACTTAACATTTCTCGATGCAA
*
20866601 ACATCCAATTATAAT-TGATGTT-AACCAAAAATGAAAAAG
131 ACATCCAATTATAATAT--TTTTGAACCAAAAATGAAAAAG
* * * *
20866640 ATTTTGATTTAAAATCAATTATAAGATTATAAAACAATTTAAAGTGAGTAACAAAGTTTTCGAAG
1 ATTTTGATTTAAAATCAATTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAAG
* * * * * *
20866705 -GCATGAGTGACTACAACTAAAATTTCCATGTCAATGGATGGCTTTCACTTTAA-ATTTC-CTGA
66 TGC--GAGTGACTACAAATGAACTTT-CTTGTCAATGGATGGCATCCAC-TTAACATTTCTC-GA
* * * *
20866767 TGCAAACATCCAATTATGAT-TTGTTTTAATCAAAAGTG-AAAAG
126 TGCAAACATCCAATTATAATATT-TTTGAACCAAAAATGAAAAAG
20866810 TATTTTGATTTAAAA
1 -ATTTTGATTTAAAA
20866825 CCTTTTAAAG
Statistics
Matches: 418, Mismatches: 85, Indels: 41
0.77 0.16 0.08
Matches are distributed among these distances:
168 3 0.01
169 125 0.30
170 184 0.44
171 102 0.24
172 4 0.01
ACGTcount: A:0.39, C:0.15, G:0.14, T:0.32
Consensus pattern (169 bp):
ATTTTGATTTAAAATCAATTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAAG
TGCGAGTGACTACAAATGAACTTTCTTGTCAATGGATGGCATCCACTTAACATTTCTCGATGCAA
ACATCCAATTATAATATTTTTGAACCAAAAATGAAAAAG
Found at i:20867681 original size:170 final size:170
Alignment explanation
Indices: 20866816--20868160 Score: 708
Period size: 171 Copynumber: 7.9 Consensus size: 170
20866806 AAAGTATTTT
* * * * * *
20866816 GATT-TAAAACCTTTTAAAGCAAGTAACAAAGCTTTCAAAGCCATGAGTGACTATAAATGGAATT
1 GATTATAAAACCATTTAAAGCGAGTAACTACGCTTTCAAAGGCATGAGTGACTATAAATGG-ACT
** * * * * * * * * * * *
20866880 TTCTTGTCAATAGATGGCATCTGCTTTATGTTTCCTAATGCGAACAACCAAATATAATATG-TTT
65 TTCTCATCAATGGATGGCATCCGCTTCACGTTTCTTGATGCAAAC-ATCAATTTTGATA-GATTT
* ** * ** ** *
20866944 TAGTGAAAAA-CAAAAAGGATTTCAATTTAAAATCACTTATAA
128 CAAAGAAAAATGAAAAATCATTTTGATTTAAAATCATTTATAA
* ** * ** * * *
20866986 GATTATAAAACCATTTAAAGCAAGTAACTACAATTTCGAAGGTTTGAGTGAATATAAATAGAATT
1 GATTATAAAACCATTTAAAGCGAGTAACTACGCTTTCAAAGGCATGAGTGACTATAAAT-GGACT
* * * ** *
20867051 TTCTCGTCAAT-CATTGGTATCTACTTCACGTTTCTTGATGCAAACAATCAATTTTGATTGATTT
65 TTCTCATCAATGGA-TGGCATCCGCTTCACGTTTCTTGATGCAAAC-ATCAATTTTGATAGATTT
*
20867115 CAAAGAAGAATGAAAAAT-ATTTTGATTTAAAATCATTTATAA
128 CAAAGAAAAATGAAAAATCATTTTGATTTAAAATCATTTATAA
* * * * * * * *
20867157 AATTATAAATCCATTTAAAGCGAGGAAGTAGGCTTTCAATGGCTTTAGTGACTATAAATGGACTT
1 GATTATAAAACCATTTAAAGCGAGTAACTACGCTTTCAAAGGCATGAGTGACTATAAATGGAC-T
* * * * *** * * *
20867222 TTCCCATTAATGGATGGCATCCGTTTCACATTTCACAATGTAAACATCCATTTATGATTGATTT-
65 TTCTCATCAATGGATGGCATCCGCTTCACGTTTCTTGATGCAAACATCAATTT-TGATAGATTTC
* ** * **
20867286 -TA-ACCAA--AAAAAT-GTTCAG-TTTAAAATCATTTATAA
129 AAAGAAAAATGAAAAATCATTTTGATTTAAAATCATTTATAA
* * * * * * *
20867322 GATTATAAAACCATTTAAAACGTGTAACAAGGCTTTCAAAAGCATGAGTGGCTATAAATGGGCTT
1 GATTATAAAACCATTTAAAGCGAGTAACTACGCTTTCAAAGGCATGAGTGACTATAAATGGAC-T
** ** * * * ** * * *
20867387 TTCTTGTCAATGGAAAGCGTCTGCTTCATGTTTCGAGATACAAACATCCAACTATGATATG-TTT
65 TTCTCATCAATGGATGGCATCCGCTTCACGTTTCTTGATGCAAACAT-CAATTTTGATA-GATTT
* ** * * *
20867451 GAACTAAAAATGAAAAA-GATTTTGATTTAAAATCATTCATAG
128 CAAAGAAAAATGAAAAATCATTTTGATTTAAAATCATTTATAA
* * * *
20867493 GATTATAAAACTATTTAAAGCGAGTAACTACGATTTTAAAGGCATGAGTGACTATAAATAGACTT
1 GATTATAAAACCATTTAAAGCGAGTAACTACGCTTTCAAAGGCATGAGTGACTATAAATGGACTT
* * * *
20867558 TCTCATAAATGGTTGGCATCCGTTTCACGTTTCTTGATGCAGACAATCAATTTTGATAGATTTCA
66 TCTCATCAATGGATGGCATCCGCTTCACGTTTCTTGATGCAAAC-ATCAATTTTGATAGATTTCA
* * *
20867623 AAGAAAAATGAAAAATCA-TTGGCTTTAAAATTATTTATAA
130 AAGAAAAATGAAAAATCATTTTGATTTAAAATCATTTATAA
* ** *
20867663 GATTATAAAACCATTTAAAGCAAGTAACT-CAGCTTTTGATGGCATGAGTGACTATAAATGGACT
1 GATTATAAAACCATTTAAAGCGAGTAACTAC-GCTTTCAAAGGCATGAGTGACTATAAATGGAC-
** * * ** * * * * * * *
20867727 TTTCTTGTCAATAGATAGCATTGGTTTCATGTTTCCTAATACAAACATCCATTTATGATCGATTT
64 TTTCTCATCAATGGATGGCATCCGCTTCACGTTTCTTGATGCAAACATCAATTT-TGATAGATTT
* * * * * *
20867792 TAACTG-AAAATGAAAAA-GATTTTAAATTAAAATCGTTTATAA
128 CAA-AGAAAAATGAAAAATCATTTTGATTTAAAATCATTTATAA
* * * * ** *
20867834 GATTATAAAACCAATT-AAGTGAATAAC-AAGACTTTCGGAGGCATGAGCGACTATAAATGGACT
1 GATTATAAAACCATTTAAAGCGAGTAACTACG-CTTTCAAAGGCATGAGTGACTATAAATGGAC-
* ** * * * * * * * *
20867897 TTTTTTGTCAATAGAAGG-AGTCCGCTTCATGTTTCCCT-ATACAAACATCCAAATCTCATATG-
64 TTTCTCATCAATGGATGGCA-TCCGCTTCACGTTT-CTTGATGCAAACAT-CAATTTTGATA-GA
** * ** *
20867959 TTT-AAACCTAAAATGAAAAA-GATTTCAATTTAAAATCATTTATAT
125 TTTCAAA-GAAAAATGAAAAATCATTTTGATTTAAAATCATTTATAA
* * * * * * * * *
20868004 GATTATAAAACCATTTAAAGTGAGAAACAAGGTTTTCAATGGAACGAGTGACTATAAATGGAGTT
1 GATTATAAAACCATTTAAAGCGAGTAACTACGCTTTCAAAGGCATGAGTGACTATAAATGGACTT
** * * * * * * * * * *
20868069 TCTTGTTAGTAGATGGCATCTGTTTCACATTGCTCGATGCAAACATCTAATTTTGATTGATTTTA
66 TCTCATCAATGGATGGCATCCGCTTCACGTTTCTTGATGCAAACATC-AATTTTGATAGATTTCA
** * *
20868134 ACCAAAAAGGAAAAA-GATTTTGATTTA
130 AAGAAAAATGAAAAATCATTTTGATTTA
20868161 TGATAATTCT
Statistics
Matches: 899, Mismatches: 236, Indels: 80
0.74 0.19 0.07
Matches are distributed among these distances:
165 107 0.12
166 13 0.01
168 6 0.01
169 10 0.01
170 348 0.39
171 405 0.45
172 10 0.01
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (170 bp):
GATTATAAAACCATTTAAAGCGAGTAACTACGCTTTCAAAGGCATGAGTGACTATAAATGGACTT
TCTCATCAATGGATGGCATCCGCTTCACGTTTCTTGATGCAAACATCAATTTTGATAGATTTCAA
AGAAAAATGAAAAATCATTTTGATTTAAAATCATTTATAA
Found at i:20867758 original size:341 final size:335
Alignment explanation
Indices: 20867123--20867899 Score: 805
Period size: 341 Copynumber: 2.3 Consensus size: 335
20867113 TTCAAAGAAG
* * * * *
20867123 AATGAAAAATATTTTGATTTAAAATCATTTATAAAATTATAAATCCATTTAAAGCGAGGAAGTAG
1 AATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGGAACTAC
* * * * * *
20867188 GCTTTCAATGGCTTTAGTGACTATAAATGGACTTTTCCCATTAATGGATGGCATCCGTTTCACAT
66 GATTTCAAAGGCATGAGTGACTATAAATAGACTTTTCCCATAAATGGATGGCATCCGTTTCACAT
* * * * * ***
20867253 TTCACAATGTAAACATCCATTTATGATTGATTTTAACCAAAAAAATGTTCAGTTTAAAATCATTT
131 TTCACAATGCAAACATCAATTTATGATAGATTTCAAACAAAAAAAAAATCAGTTTAAAATCATTT
** *
20867318 ATAAGATTATAAAACCATTTAAAACGTGTAACAAGGCTTTCAAAAGCATGAGTGGCTATAAATGG
196 ATAAGATTATAAAACCATTTAAAACAAGTAACAAGGCTTTCAAAAGCATGAGTGACTATAAATGG
* * *
20867383 GCTTTTCTTGTCAATGGAAAGCGTCTGCTTCATGTTT-CGAGATACAAACATCCAACTATGAT-A
261 ACTTTTCTTGTCAATAGAAAGCATCTGCTTCATGTTTCCGA-ATACAAACATCCAACTATGATCA
20867446 TGTTTGAACTAAA
325 T-TTT-AACTAAA
* * * *
20867459 AATGAAAAAGATTTTGATTTAAAATCATTCATAGGATTATAAAACTATTTAAAGCGAGTAACTAC
1 AATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGGAACTAC
* * * *
20867524 GATTTTAAAGGCATGAGTGACTATAAATAGAC-TTTCTCATAAATGGTTGGCATCCGTTTCACGT
66 GATTTCAAAGGCATGAGTGACTATAAATAGACTTTTCCCATAAATGGATGGCATCCGTTTCACAT
*** * *
20867588 TTCTTGATGCAGACAATCAATTT-TGATAGATTTCAAAGAAAAATGAAAAATCATTGGCTTTAAA
131 TTCACAATGCAAAC-ATCAATTTATGATAGATTTCAAACAAAAA--AAAAATCA---G-TTTAAA
* * * ** **
20867652 ATTATTTATAAGATTATAAAACCATTTAAAGCAAGTAACTCA-GCTTTTGATGGCATGAGTGACT
189 ATCATTTATAAGATTATAAAACCATTTAAAACAAGTAAC-AAGGCTTTCAAAAGCATGAGTGACT
* * * **
20867716 ATAAATGGACTTTTCTTGTCAATAGATAGCAT-TGGTTTCATGTTTCCTAATACAAACATCCATT
253 ATAAATGGACTTTTCTTGTCAATAGAAAGCATCT-GCTTCATGTTTCCGAATACAAACATCCAAC
*
20867780 TATGATCGATTTTAACTGAA
317 TATGATC-ATTTTAACTAAA
* * * * * ** *
20867800 AATGAAAAAGATTTTAAATTAAAATCGTTTATAAGATTATAAAACCAATT-AAGTGAATAAC-AA
1 AATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGGAACTAC
** * *
20867863 GACTTTCGGAGGCATGAGCGACTATAAATGGACTTTT
66 GA-TTTCAAAGGCATGAGTGACTATAAATAGACTTTT
20867900 TTTGTCAATA
Statistics
Matches: 361, Mismatches: 66, Indels: 23
0.80 0.15 0.05
Matches are distributed among these distances:
335 53 0.15
336 89 0.25
337 5 0.01
339 3 0.01
340 36 0.10
341 167 0.46
342 6 0.02
343 2 0.01
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (335 bp):
AATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGGAACTAC
GATTTCAAAGGCATGAGTGACTATAAATAGACTTTTCCCATAAATGGATGGCATCCGTTTCACAT
TTCACAATGCAAACATCAATTTATGATAGATTTCAAACAAAAAAAAAATCAGTTTAAAATCATTT
ATAAGATTATAAAACCATTTAAAACAAGTAACAAGGCTTTCAAAAGCATGAGTGACTATAAATGG
ACTTTTCTTGTCAATAGAAAGCATCTGCTTCATGTTTCCGAATACAAACATCCAACTATGATCAT
TTTAACTAAA
Found at i:20868304 original size:15 final size:15
Alignment explanation
Indices: 20868249--20868307 Score: 55
Period size: 15 Copynumber: 3.8 Consensus size: 15
20868239 ATTTAGTTAT
*
20868249 TTTTAGTTGTTTTTA
1 TTTTAGTTATTTTTA
20868264 TTATTAGTTTATTTTTA
1 TT-TTAG-TTATTTTTA
** *
20868281 AGTGAGTTATTTTTA
1 TTTTAGTTATTTTTA
*
20868296 TTTTTGTTATTT
1 TTTTAGTTATTT
20868308 CTTTTAATTT
Statistics
Matches: 34, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
15 19 0.56
16 7 0.21
17 8 0.24
ACGTcount: A:0.19, C:0.00, G:0.12, T:0.69
Consensus pattern (15 bp):
TTTTAGTTATTTTTA
Found at i:20870297 original size:339 final size:341
Alignment explanation
Indices: 20869615--20871729 Score: 1739
Period size: 339 Copynumber: 6.2 Consensus size: 341
20869605 TTTCAAGTCC
* *** * * *
20869615 TTTATAAGATTGTAAAACCATTTAAAGTGAGTAAAAAGGCTTTCGAAGACATGAGTGACTATAAA
1 TTTATAAGATTATAAAACCATTTAAACCAAGTAACAA-TCTTTCGAAGGCATGAGTGACTATAAA
* * * * *
20869680 TGGACTTTTCTTGTCAATGGAT-GTCTTCTGCTTTACATT-TCCCAATGCAAACATCCAATTATG
65 TGGACTTTTCTTGTCAATGGATAG-CATCTGCTTCACGTTCT-CTAATGCAAACATCCAAATATG
** * * *
20869743 -TCTTTTTTAACCAAAAAATGAAAAAGATTTTGACTTAAAATCATTTATAAGGTTATAAAAGCAT
128 ATCGATTTTAACC--AAAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCAT
* * * * * * * * *
20869807 ATAAAG-AAGGTAACTAGGCTTTTGATGGCATTAGTGACTATAAATTGACA-ATTCTTGTTAATA
191 TTAAAGCAA-GTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGA-ATTTTCTTGTCAATG
* * * * ** * * * * * *
20869870 GATGGCATCCGCTTCAGGTTTTTTGATACAAACAACAAATTTTGATTGACTTTAA-CAAAAAATG
254 GATGGCTTTCGCTTCATGTTTCTCAATGCAAACATCCAATTATGATTGATTTTAACCAAAACATG
*
20869934 AAAAAGATTTTGATTTATAATCA
319 AAAAAGATTTTGATTTAAAATCA
* *
20869957 TTTATAAGATTATAAAACCATTT-AACCAAGTAACAATCTGTT-GAAGGCTTGACTGACTATAAA
1 TTTATAAGATTATAAAACCATTTAAACCAAGTAACAATCT-TTCGAAGGCATGAGTGACTATAAA
* ** *
20870020 TGGACTTTTCTTGTCACTGGATAGCATCCACTTCACGTTCTC-AATGCAAACATCCAATTATGAT
65 TGGACTTTTCTTGTCAATGGATAGCATCTGCTTCACGTTCTCTAATGCAAACATCCAAATATGAT
* * * * *
20870084 CGATTTTAACCAAAATTGAAAAAGATTTCGGTTTAAAATCATTTATAAAATTATAGAACCATTGA
130 CGATTTTAACCAAAA-TGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTA
* * * * *
20870149 AAGCGAGTAACAAGGCTTTCGAAGGAATGGGTGACTATAAATGGAATTTTCTTTTGAATGGATGG
194 AAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGAATTTTCTTGTCAATGGATGG
*
20870214 CTTTCGCTTCATGTTTCTCAATGCAAACA-CACAATTATGATCCG-TTTTAACCAACAACA-G-A
259 CTTTCGCTTCATGTTTCTCAATGCAAACATC-CAATTATGAT-TGATTTTAACCAA-AACATGAA
20870275 AAAGATTTTGATTTAAAATCA
321 AAAGATTTTGATTTAAAATCA
* ** * * * *
20870296 TTTATAA-ATCATAAATTCATTTAAAGCGAGTAACAATGCTTTTGATGGCATGAGTGACTATAAA
1 TTTATAAGATTATAAAACCATTTAAACCAAGTAACAAT-CTTTCGAAGGCATGAGTGACTATAAA
* * ** * * *
20870360 TGGA-TTTTCTAGTCAATGGATGGCATCAACTTCACGTT-TCCTTATGCAAACATCCAAATGTAA
65 TGGACTTTTCTTGTCAATGGATAGCATCTGCTTCACGTTCT-CTAATGCAAACATCCAAATATGA
* * * *
20870423 TCTG-TTTTAACCAAAAGGAAAAAGATTTTGATTTAAAACCATTTATAAAATTATAAAGCCATTT
129 TC-GATTTTAACCAAAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTT
*** * * * * * *
20870487 AAAGCAAGTAATTGGGCTTGT-GAATGCATGAGTGACTATAAATAGACTTTTCTTGTCGATAGAA
193 AAAGCAAGTAACAAGGCTT-TCGAAGGCATGAGTGACTATAAATGGAATTTTCTTGTCAATGGAT
* * * *
20870551 GGC-ATCTGC-TCTACGTTTCTCAATTCAAACATCCAAATATGA-T-ATTTTTGAACCAAAAACA
257 GGCTTTC-GCTTC-ATGTTTCTCAATGCAAACATCCAATTATGATTGA-TTTT-AACC-AAAACA
* **
20870612 --ACAAAGATTTCAATTTAAAATCA
317 TGAAAAAGATTTTGATTTAAAATCA
** ** * * *
20870635 TTTATAAGATTATAAAACCATTTAAACGGAGTAACTAGGCTTTCGATGGCATCAGTGACTATCAA
1 TTTATAAGATTATAAAACCATTTAAACCAAGTAAC-AATCTTTCGAAGGCATGAGTGACTATAAA
* * * * * ** ** *
20870700 TGGACCTTTCTTGTCAATGGATGGCATCTGCTTCATGTTTTCTAGTTAAAAGGTCCAATTATGAT
65 TGGACTTTTCTTGTCAATGGATAGCATCTGCTTCACGTTCTCTAATGCAAACATCCAAATATGAT
* * ** * *
20870765 TGATTTTAACCCCAAATGTGAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACTATTTT
130 CGATTTTAA-CCAAAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTA
* * * *
20870830 CAGCAAGTAACAAGGCTTTCGATGGCATGAGTGACTATAAATGGACTTTTCTTGTAAATGGATGG
194 AAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGAATTTTCTTGTCAATGGATGG
* * * * * * *
20870895 CTTTCACTTCATATTTATCGATGTAAACATCCAATTATGATAT-ATTTTTACCAAAA-GTGAAAA
259 CTTTCGCTTCATGTTTCTCAATGCAAACATCCAATTATGAT-TGATTTTAACCAAAACATGAAAA
*
20870958 ACATTTTGATTTAAAATCA
323 AGATTTTGATTTAAAATCA
* * * ** * * *
20870977 TTTATAATATT-TAAAATCATTTAAAGCAAGTAACTAGGCTTTTCAAAGAG-ATAAGTGACTGTA
1 TTTATAAGATTATAAAACCATTTAAACCAAGTAAC-AATC-TTTCGAAG-GCATGAGTGACTATA
* * * *
20871040 AATGGACATTTCTTATCAATGGA-AGGCATTTGCTTCATGTT-TCCTAATGCAAACATCCAAATA
63 AATGGACTTTTCTTGTCAATGGATA-GCATCTGCTTCACGTTCT-CTAATGCAAACATCCAAATA
* * ** * * *
20871103 TGATC-AGTTTGAGCCAAAAACAAACAA-ATTTTGATTTAAAATTATTTATAAGTTTATAAGACC
126 TGATCGA-TTTTAACCAAAATGAAA-AAGATTTTGATTTAAAATCATTTATAAGATTATAAAACC
** * * * * * *
20871166 ATTTAAAGTGAGAAACTAGACTTTCGATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAACG
189 ATTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGAATTTTCTTGTCAATG
* * * * * * * *
20871231 GATGGCATCCGCTTCCTGTTTC-CGAATGCACACATCCAATTAAGATCGATTGTGACC-AAACAT
254 GATGGCTTTCGCTTCATGTTTCTC-AATGCAAACATCCAATTATGATTGATTTTAACCAAAACAT
** *
20871294 G-AAAAGATTTCAATTCAAAATCA
318 GAAAAAGATTTTGATTTAAAATCA
* * * * *
20871317 TGTACAAGATTATAAAACCATTT-TACGCAAGTAACAACACTTTAGAAGGCATGAGTGACTATAA
1 TTTATAAGATTATAAAACCATTTAAAC-CAAGTAACAA-TCTTTCGAAGGCATGAGTGACTATAA
* * * **
20871381 ATGGACTTTTCTTGTCAATGGA-AGGCATCCGCTTCATGTTAC-CCAATG-AAACATATAAATAT
64 ATGGACTTTTCTTGTCAATGGATA-GCATCTGCTTCACGTT-CTCTAATGCAAACATCCAAATAT
* * * ** * *
20871443 GATTTG-TTTGAACCAAGAA-CAAAGAAGATTTCAATTTAAAGTCATTTATAAGATTATAAAATC
127 GA-TCGATTTTAACCAA-AATGAAA-AAGATTTTGATTTAAAATCATTTATAAGATTATAAAACC
* * * * * *
20871506 ATTTAAAGTAAGGAACAAAGCTTTAGAAAGCATGAGTGACTACAAATGGAATTTTCTTGTCAATG
189 ATTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGAATTTTCTTGTCAATG
* ** * * * * *
20871571 GATAGCATTT-GCTTCACCTCTC-CTGATGC--ACATCCAATGATAATTGATTTTAATCAAAA-A
254 GATGGC-TTTCGCTTCATGTTTCTC-AATGCAAACATCCAATTATGATTGATTTTAACCAAAACA
20871631 TGAAAAAGATTTTGATTTAAAATCA
317 TGAAAAAGATTTTGATTTAAAATCA
* * * * *
20871656 TTTATAAGATTATAAAACTATTTAAAGCAAGTAACAATGCTTTCAAAGACATGAGTGATTATAAA
1 TTTATAAGATTATAAAACCATTTAAACCAAGTAACAAT-CTTTCGAAGGCATGAGTGACTATAAA
20871721 TGGACTTTT
65 TGGACTTTT
20871730 GTTGCCAGTA
Statistics
Matches: 1426, Mismatches: 284, Indels: 129
0.78 0.15 0.07
Matches are distributed among these distances:
338 49 0.03
339 483 0.34
340 373 0.26
341 256 0.18
342 254 0.18
343 9 0.01
344 2 0.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (341 bp):
TTTATAAGATTATAAAACCATTTAAACCAAGTAACAATCTTTCGAAGGCATGAGTGACTATAAAT
GGACTTTTCTTGTCAATGGATAGCATCTGCTTCACGTTCTCTAATGCAAACATCCAAATATGATC
GATTTTAACCAAAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAA
GCAAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGAATTTTCTTGTCAATGGATGGCT
TTCGCTTCATGTTTCTCAATGCAAACATCCAATTATGATTGATTTTAACCAAAACATGAAAAAGA
TTTTGATTTAAAATCA
Found at i:20870359 original size:170 final size:169
Alignment explanation
Indices: 20869615--20871747 Score: 1751
Period size: 171 Copynumber: 12.5 Consensus size: 169
20869605 TTTCAAGTCC
* ** * *
20869615 TTTATAAGATTGTAAAACCATTTAAAGTGAGTAAAAAGGCTTTCGAAGACATGAGTGACTATAAA
1 TTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAA
* * ** *
20869680 TGGACTTTTCTTGTCAATGGATGTCTTCTGCTTTACATTTCCCAATGCAAACATCCAATTATG-T
66 TGGACTTTTCTTGTCAATGGATGGCTTC-GCTTCATGTTTCTCAATGCAAACATCCAATTATGAT
* * *
20869744 CTTTTTTAACCAAAAAATGAAAAAGATTTTGACTTAAAATCA
130 -TGTTTTAACCAAAACA-GAAAAAGATTTTGATTTAAAATCA
* * * * * * *
20869786 TTTATAAGGTTATAAAAGCATATAAAG-AAGGTAACTAGGCTTTTGATGGCATTAGTGACTATAA
1 TTTATAAGATTATAAAACCATTTAAAGCAA-GTAACAAGGCTTTCGAAGGCATGAGTGACTATAA
* ** * * * * * ** * * * *
20869850 ATTGACAATTCTTGTTAATAGATGGCATCCGCTTCAGGTTTTTTGATACAAACAACAAATTTTGA
65 ATGGACTTTTCTTGTCAATGGATGGC-TTCGCTTCATGTTTCTCAATGCAAACATCCAATTATGA
* * *
20869915 TTGACTTTAA-CAAAAAATGAAAAAGATTTTGATTTATAATCA
129 TTG-TTTTAACCAAAACA-GAAAAAGATTTTGATTTAAAATCA
* * * *
20869957 TTTATAAGATTATAAAACCATTT-AACCAAGTAACAA-TCTGTT-GAAGGCTTGACTGACTATAA
1 TTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCT-TTCGAAGGCATGAGTGACTATAA
* * * * *
20870019 ATGGACTTTTCTTGTCACTGGATAGCATCCACTTCACG-TTCTCAATGCAAACATCCAATTATGA
65 ATGGACTTTTCTTGTCAATGGATGGC-TTCGCTTCATGTTTCTCAATGCAAACATCCAATTATGA
* ** * *
20870083 TCGATTTTAACCAAAATTGAAAAAGATTTCGGTTTAAAATCA
129 TTG-TTTTAACCAAAACAGAAAAAGATTTTGATTTAAAATCA
* * * * * *
20870125 TTTATAAAATTATAGAACCATTGAAAGCGAGTAACAAGGCTTTCGAAGGAATGGGTGACTATAAA
1 TTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAA
* * *
20870190 TGGAATTTTCTTTTGAATGGATGGCTTTCGCTTCATGTTTCTCAATGCAAACA-CACAATTATGA
66 TGGACTTTTCTTGTCAATGGATGGC-TTCGCTTCATGTTTCTCAATGCAAACATC-CAATTATGA
*
20870254 TCCGTTTTAACCAACAACAG-AAAAGATTTTGATTTAAAATCA
129 T-TGTTTTAACCAA-AACAGAAAAAGATTTTGATTTAAAATCA
* ** * * * *
20870296 TTTATAA-ATCATAAATTCATTTAAAGCGAGTAACAATGCTTTTGATGGCATGAGTGACTATAAA
1 TTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAA
* * * * * * * *
20870360 TGGA-TTTTCTAGTCAATGGATGGCATCAACTTCACGTTTC-CTTATGCAAACATCCAAATGTAA
66 TGGACTTTTCTTGTCAATGGATGGCTTC-GCTTCATGTTTCTC-AATGCAAACATCCAATTATGA
* *
20870423 TCTGTTTTAACCAAAA-GGAAAAAGATTTTGATTTAAAACCA
129 T-TGTTTTAACCAAAACAGAAAAAGATTTTGATTTAAAATCA
* * *** *
20870464 TTTATAAAATTATAAAGCCATTTAAAGCAAGTAATTGGGCTTGT-GAATGCATGAGTGACTATAA
1 TTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTT-TCGAAGGCATGAGTGACTATAA
* * * * * * * *
20870528 ATAGACTTTTCTTGTCGATAGAAGGCATCTGC-TCTACGTTTCTCAATTCAAACATCCAAATATG
65 ATGGACTTTTCTTGTCAATGGATGGCTTC-GCTTC-ATGTTTCTCAATGCAAACATCCAATTATG
* **
20870592 ATAT-TTTTGAACCAAAAACA-ACAAAGATTTCAATTTAAAATCA
128 AT-TGTTTT-AACC-AAAACAGAAAAAGATTTTGATTTAAAATCA
* * * * *
20870635 TTTATAAGATTATAAAACCATTTAAA-CGGAGTAACTAGGCTTTCGATGGCATCAGTGACTATCA
1 TTTATAAGATTATAAAACCATTTAAAGC-AAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAA
* * * ** **
20870699 ATGGACCTTTCTTGTCAATGGATGGCATCTGCTTCATGTTT-TCTAGTTAAAAGGTCCAATTATG
65 ATGGACTTTTCTTGTCAATGGATGGCTTC-GCTTCATGTTTCTC-AATGCAAACATCCAATTATG
* * **
20870763 ATTGATTTTAACCCCAAA-TGTGAAAGATTTTGATTTAAAATCA
128 ATTG-TTTTAA-CCAAAACAGAAAAAGATTTTGATTTAAAATCA
* ** *
20870806 TTTATAAGATTATAAAACTATTTTCAGCAAGTAACAAGGCTTTCGATGGCATGAGTGACTATAAA
1 TTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAA
* * * * * *
20870871 TGGACTTTTCTTGTAAATGGATGGCTTTCACTTCATATTTATCGATGTAAACATCCAATTATGAT
66 TGGACTTTTCTTGTCAATGGATGGC-TTCGCTTCATGTTTCTCAATGCAAACATCCAATTATGAT
* * ** *
20870936 ATATTTTTACCAAAAGTGAAAAACATTTTGATTTAAAATCA
130 -TGTTTTAACCAAAACAGAAAAAGATTTTGATTTAAAATCA
* * * * * *
20870977 TTTATAATATT-TAAAATCATTTAAAGCAAGTAACTAGGCTTTTCAAAGAG-ATAAGTGACTGTA
1 TTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGC-TTTCGAAG-GCATGAGTGACTATA
* * * * *
20871040 AATGGACATTTCTTATCAATGGAAGGCATTTGCTTCATGTTTC-CTAATGCAAACATCCAAATAT
64 AATGGACTTTTCTTGTCAATGGATGGC-TTCGCTTCATGTTTCTC-AATGCAAACATCCAATTAT
* * * * *
20871104 GATCAGTTTGAGCCAAAAACA-AACAA-ATTTTGATTTAAAATTA
127 GAT-TGTTTTAACC-AAAACAGAAAAAGATTTTGATTTAAAATCA
* * ** * * * *
20871147 TTTATAAGTTTATAAGACCATTTAAAGTGAGAAACTAGACTTTCGATGGCATGAGTGACTATAAA
1 TTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAA
* * * * *
20871212 TGGACTTTTCTTGTCAACGGATGGCATCCGCTTCCTGTTTC-CGAATGCACACATCCAATTAAGA
66 TGGACTTTTCTTGTCAATGGATGGC-TTCGCTTCATGTTTCTC-AATGCAAACATCCAATTATGA
* * * ** *
20871276 TCGATTGTGACC-AAACATG-AAAAGATTTCAATTCAAAATCA
129 TTG-TTTTAACCAAAACA-GAAAAAGATTTTGATTTAAAATCA
* * * * ** *
20871317 TGTACAAGATTATAAAACCATTTTACGCAAGTAACAACACTTTAGAAGGCATGAGTGACTATAAA
1 TTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAA
* * * * ** *
20871382 TGGACTTTTCTTGTCAATGGAAGGCATCCGCTTCATGTTACCCAATG-AAACATATAAATATGAT
66 TGGACTTTTCTTGTCAATGGATGGC-TTCGCTTCATGTTTCTCAATGCAAACATCCAATTATGA-
* * ** *
20871446 TTGTTTGAACCAAGAACA-AAGAAGATTTCAATTTAAAGTCA
129 TTGTTTTAACCAA-AACAGAAAAAGATTTTGATTTAAAATCA
* * * * * * *
20871487 TTTATAAGATTATAAAATCATTTAAAGTAAGGAACAAAGCTTTAGAAAGCATGAGTGACTACAAA
1 TTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAA
* * * ** * * * *
20871552 TGGAATTTTCTTGTCAATGGATAGCATTTGCTTCACCTCTC-CTGATGC--ACATCCAATGATAA
66 TGGACTTTTCTTGTCAATGGATGGC-TTCGCTTCATGTTTCTC-AATGCAAACATCCAATTATGA
*
20871614 TTGATTTTAATCAAAA-ATGAAAAAGATTTTGATTTAAAATCA
129 TTG-TTTTAACCAAAACA-GAAAAAGATTTTGATTTAAAATCA
* * * * *
20871656 TTTATAAGATTATAAAACTATTTAAAGCAAGTAACAATGCTTTCAAAGACATGAGTGATTATAAA
1 TTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAA
* * * *
20871721 TGGACTTTTGTTGCCAGTAGATGGCTT
66 TGGACTTTTCTTGTCAATGGATGGCTT
20871748 TCTGTCACAA
Statistics
Matches: 1571, Mismatches: 332, Indels: 121
0.78 0.16 0.06
Matches are distributed among these distances:
167 2 0.00
168 113 0.07
169 305 0.19
170 515 0.33
171 604 0.38
172 32 0.02
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (169 bp):
TTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAA
TGGACTTTTCTTGTCAATGGATGGCTTCGCTTCATGTTTCTCAATGCAAACATCCAATTATGATT
GTTTTAACCAAAACAGAAAAAGATTTTGATTTAAAATCA
Found at i:20870998 original size:10 final size:10
Alignment explanation
Indices: 20870966--20871001 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
20870956 AAACATTTTG
20870966 ATTTAAAATC
1 ATTTAAAATC
*
20870976 ATTTATAAT-
1 ATTTAAAATC
20870985 ATTTAAAATC
1 ATTTAAAATC
20870995 ATTTAAA
1 ATTTAAA
20871002 GCAAGTAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
9 8 0.35
10 15 0.65
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (10 bp):
ATTTAAAATC
Found at i:20883366 original size:34 final size:34
Alignment explanation
Indices: 20883302--20883400 Score: 87
Period size: 34 Copynumber: 2.9 Consensus size: 34
20883292 AAATTTTCAG
**
20883302 TAGCCAAAGCTGCTC-ATATCAACCTC-AAAATCAA
1 TAGCC-AAGCTGCTCTAT-TCTTCCTCAAAAATCAA
*
20883336 TAGCCAAGCTGCTCTATTCTTCCTCAAAAATCAG
1 TAGCCAAGCTGCTCTATTCTTCCTCAAAAATCAA
* * *
20883370 CAGCTAAGTTGCTCTATT-TGTCCTCTAAAAA
1 TAGCCAAGCTGCTCTATTCT-TCCTC-AAAAA
20883401 CTCGACAGCC
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
33 16 0.29
34 34 0.62
35 5 0.09
ACGTcount: A:0.33, C:0.27, G:0.11, T:0.28
Consensus pattern (34 bp):
TAGCCAAGCTGCTCTATTCTTCCTCAAAAATCAA
Found at i:20884500 original size:35 final size:35
Alignment explanation
Indices: 20884451--20884541 Score: 123
Period size: 34 Copynumber: 2.6 Consensus size: 35
20884441 AGCCCTTGTT
* *
20884451 TTCTCTCTTAAAATTTGCAGCAAAAC-CTTTCCTCC
1 TTCTCTCTCAAAATTTGTAGCAAAACTCTTT-CTCC
* *
20884486 TTCTTTCTCAAAATTTGTAGC-AAACTCTTTCTTC
1 TTCTCTCTCAAAATTTGTAGCAAAACTCTTTCTCC
20884520 TTCTCTCTCAAAATTTGTAGCA
1 TTCTCTCTCAAAATTTGTAGCA
20884542 CGAAGCCTCT
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
34 27 0.55
35 22 0.45
ACGTcount: A:0.25, C:0.26, G:0.07, T:0.42
Consensus pattern (35 bp):
TTCTCTCTCAAAATTTGTAGCAAAACTCTTTCTCC
Found at i:20891149 original size:42 final size:42
Alignment explanation
Indices: 20891041--20891207 Score: 165
Period size: 42 Copynumber: 4.0 Consensus size: 42
20891031 TGTTGATGTG
** **
20891041 GACCCGGCTATGTGCGAGTAGGAACGCACATAAACCGTTGCT
1 GACCCGGCTATGTGCGAGTAGGAGTGCACATAAGTCGTTGCT
*
20891083 GACCCGGCTATGTGCGAATAGGAGTGCACATAAGTCGTTGCT
1 GACCCGGCTATGTGCGAGTAGGAGTGCACATAAGTCGTTGCT
* * * *
20891125 GACCCGGTTATGTGTGAGTGGGAGTGAACATAAGAT-GTTGCT
1 GACCCGGCTATGTGCGAGTAGGAGTGCACATAAG-TCGTTGCT
* * * * * * * *
20891167 GACTCAGCTATATACGAGTGGGAGTACGCATAAGCCGTTGC
1 GACCCGGCTATGTGCGAGTAGGAGTGCACATAAGTCGTTGC
20891208 ATATGAGATG
Statistics
Matches: 103, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
42 102 0.99
43 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.23
Consensus pattern (42 bp):
GACCCGGCTATGTGCGAGTAGGAGTGCACATAAGTCGTTGCT
Found at i:20893300 original size:42 final size:42
Alignment explanation
Indices: 20893154--20893300 Score: 170
Period size: 42 Copynumber: 3.5 Consensus size: 42
20893144 TATTTACCTG
* * * *
20893154 GCTATGTGCAAGTAGGAGTGTGCATAAGTCGATGCTGACTCA
1 GCTATGTGCGAGTGGGAGTGCGCATAAGTCGATGCTGACCCA
* * * *
20893196 ACTATGTGCGAGTGGGAGTGTGCATAAG-CTAATGCTGACCTA
1 GCTATGTGCGAGTGGGAGTGCGCATAAGTC-GATGCTGACCCA
*
20893238 GCTATGTGCGAGTGGGAGTGCGCATAAGTCGATGTTGACCCA
1 GCTATGTGCGAGTGGGAGTGCGCATAAGTCGATGCTGACCCA
* * *
20893280 GCCATATGCTAGTGGGAGTGC
1 GCTATGTGCGAGTGGGAGTGC
20893301 ATATGAGCTG
Statistics
Matches: 89, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
41 1 0.01
42 87 0.98
43 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.33, T:0.25
Consensus pattern (42 bp):
GCTATGTGCGAGTGGGAGTGCGCATAAGTCGATGCTGACCCA
Found at i:20899316 original size:56 final size:56
Alignment explanation
Indices: 20899239--20899352 Score: 228
Period size: 56 Copynumber: 2.0 Consensus size: 56
20899229 AAGAGAAGAA
20899239 TGACAAATTGGGAATTGAATAGACGAGTATGTATTTATATATATCCTAAGAATAGG
1 TGACAAATTGGGAATTGAATAGACGAGTATGTATTTATATATATCCTAAGAATAGG
20899295 TGACAAATTGGGAATTGAATAGACGAGTATGTATTTATATATATCCTAAGAATAGG
1 TGACAAATTGGGAATTGAATAGACGAGTATGTATTTATATATATCCTAAGAATAGG
20899351 TG
1 TG
20899353 CATGTCTATA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 58 1.00
ACGTcount: A:0.39, C:0.07, G:0.22, T:0.32
Consensus pattern (56 bp):
TGACAAATTGGGAATTGAATAGACGAGTATGTATTTATATATATCCTAAGAATAGG
Found at i:20902531 original size:28 final size:27
Alignment explanation
Indices: 20902495--20902547 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
20902485 ATATCCTGGT
*
20902495 GGTGGAAAATTACAATTTTGCCCCTGA
1 GGTGGAAAATTACAATTTTACCCCTGA
*
20902522 GGTGGCAAAATTACCATTTTACCCCT
1 GGTGG-AAAATTACAATTTTACCCCT
20902548 ATACTCCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 5 0.22
28 18 0.78
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (27 bp):
GGTGGAAAATTACAATTTTACCCCTGA
Found at i:20902615 original size:20 final size:20
Alignment explanation
Indices: 20902592--20902637 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
20902582 CTTCTAAACC
20902592 TCAAATCATACT-TCAATAAG
1 TCAAATCATACTCT-AATAAG
*
20902612 TCAAATTATACTCTAATAAG
1 TCAAATCATACTCTAATAAG
20902632 TCAAAT
1 TCAAAT
20902638 GGGGTCAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 23 0.96
21 1 0.04
ACGTcount: A:0.46, C:0.17, G:0.04, T:0.33
Consensus pattern (20 bp):
TCAAATCATACTCTAATAAG
Found at i:20910845 original size:171 final size:171
Alignment explanation
Indices: 20910525--20912763 Score: 1819
Period size: 171 Copynumber: 13.2 Consensus size: 171
20910515 AGGATTTCAA
* * * * * * * *
20910525 TATAAAATCATTTAAAA-CGAGTAACAAGGCTTTTGATGGTATGAGTAACTATAAATGGAATTTT
1 TATAAAACCATTTAAAAGCGAGTAACTAGACTTTCGAAGGCATGAGTGACTATAAATGGACTTTT
* * * * *
20910589 ATTGTC-ATGGATGGCATCTGCTTCCTGTTTTCC-AATGCAAACATCCAAATATGGTCTATTTTA
66 CTTGTCAATGGATGGCATCCGCTTCATG-TTTCCTAATGCAAACATCCAATTATGAT-TATTTTA
** ** * * *
20910652 ATAAAAAACAAAAAAGATTTCAATTTTAAATTATTTATAAGAT
129 ACCAAAAATGAAAAAGATTTCGATTTAAAATCATTTATAAGAT
* * * * * * *
20910695 TATAAAATCA-TTAAAATCGAGTAACTATAATTTCGAAAGCATGGGTGACTATAAATAGACTTTT
1 TATAAAACCATTTAAAAGCGAGTAACTAGACTTTCGAAGGCATGAGTGACTATAAATGGACTTTT
* * * * * * *
20910759 CTTGTCAATAGTTGGCATCCGCTTCATGTTTCATGATGCAAACAAT-CAATTTTGATTGGTTTCA
66 CTTGTCAATGGATGGCATCCGCTTCATGTTTCCTAATGCAAAC-ATCCAATTATGATT-ATTTTA
** * * *
20910823 AAAAAAAATGAAAAAGATTTCAACTTAAAATCATTTATAAGGT
129 ACCAAAAATGAAAAAGATTTCGATTTAAAATCATTTATAAGAT
* * * * * *
20910866 TATAAAACCATTT-AAAGTGAGTAACCAGGCTTTCGATGGCATGAGTGAATATAAATGGGCTTTT
1 TATAAAACCATTTAAAAGCGAGTAACTAGACTTTCGAAGGCATGAGTGACTATAAATGGACTTTT
** * ** * * * *
20910930 CTCATCAATGGATGGCATTCG-TGTCACCTTTCCCAATGAAAACATCCATTTATGATCAATTTTA
66 CTTGTCAATGGATGGCATCCGCT-TCATGTTTCCTAATGCAAACATCCAATTATGAT-TATTTTA
* * * *
20910994 CCCAAAAATGAAAAATA-TTCCAGTTTAAAATCATTTATAAAAT
129 ACCAAAAATGAAAAAGATTTCGA-TTTAAAATCATTTATAAGAT
* * * *
20911037 TATAAAACTATTT-AAAGCGAGTAA-TAAGGCTTTCAAAGACATGAGTGACTATAAATGGACTTT
1 TATAAAACCATTTAAAAGCGAGTAACT-AGACTTTCGAAGGCATGAGTGACTATAAATGGACTTT
* * ** * * *
20911100 TCTTGTCAATGGAAGACATCCATTTCATGTTTCCTAATGAAAACATCCAAATATGATCTATTTGA
65 TCTTGTCAATGGATGGCATCCGCTTCATGTTTCCTAATGCAAACATCCAATTATGAT-TATTTTA
* * * * * * * *
20911165 ACCAAAAATGAAAAAAATTTTGATTTTAATTTATTCATCATAT
129 ACCAAAAATGAAAAAGATTTCGATTTAAAATCATTTATAAGAT
* * * * * *
20911208 TATAAAACCATTTAAAA-TGAGTAACTAGGCTTTTGATGCCATGAGTGACTCTAAATGGACTTTT
1 TATAAAACCATTTAAAAGCGAGTAACTAGACTTTCGAAGGCATGAGTGACTATAAATGGACTTTT
** * * * *
20911272 CTTCCCAACGAATGGCATCCGCTTCATGTTT-CTCAATGCAAACATCCAATTTTGTTCTATTTTA
66 CTTGTCAATGGATGGCATCCGCTTCATGTTTCCT-AATGCAAACATCCAATTATGAT-TATTTTA
* * *
20911336 ACCAAAAATGAAAAATATTTTGATTTAAAATCATTTATAAAAT
129 ACCAAAAATGAAAAAGATTTCGATTTAAAATCATTTATAAGAT
* * * *
20911379 TATAAAACAATTTAAAA-CTAGTAACAAGCCTTTCGAAGGCATGAGTGACTATAAATGGACTTTT
1 TATAAAACCATTTAAAAGCGAGTAACTAGACTTTCGAAGGCATGAGTGACTATAAATGGACTTTT
* * * *** * * *
20911443 CTCT-TCAATAGATGGCTTCCACTTCACACTTCCTAATACAAATATCCAATTATGATCTGTTTTA
66 CT-TGTCAATGGATGGCATCCGCTTCATGTTTCCTAATGCAAACATCCAATTATGAT-TATTTTA
** * *
20911507 ACCAAAAACAAAAAAGATTTC-AGTTAAAATCATTTATTAGAT
129 ACCAAAAATGAAAAAGATTTCGATTTAAAATCATTTATAAGAT
** * * * * * * *
20911549 TATAAAATAATTT-AAAGCGAGCAA-GAAAGCTTTTGATGGCATGAGTAACTATAAATGGTCTTT
1 TATAAAACCATTTAAAAGCGAGTAACTAGA-CTTTCGAAGGCATGAGTGACTATAAATGGACTTT
** * * * * * * *
20911612 TCTTGTCAACAGAAGGCAACTGCTTCACGTTTCCTGATGCAAACACCCAATTTTGATTGATTTTA
65 TCTTGTCAATGGATGGCATCCGCTTCATGTTTCCTAATGCAAACATCCAATTATGATT-ATTTTA
* * *
20911677 AACAAAAATGAAAAAGATTTC-TTTTAAAATCATTTAGAAGAT
129 ACCAAAAATGAAAAAGATTTCGATTTAAAATCATTTATAAGAT
* ** * * * *
20911719 TATAAAACCATTT-AAAGCAAGTAA-TAAGGTTTTCAAAGACATAAGTGACTATAATGTGGACTT
1 TATAAAACCATTTAAAAGCGAGTAACT-AGACTTTCGAAGGCATGAGTGACTATAA-ATGGACTT
* * * * * * * * ** *
20911782 TTCTTTTTAATGGAAGGCATCTGCTTCACGTTTCTTGATGCAAACATCAAAAAATAATCTA-TTT
64 TTCTTGTCAATGGATGGCATCCGCTTCATGTTTCCTAATGCAAACATCCAATTATGAT-TATTTT
** * * * *
20911846 AATGAAAAATGAATAATATTTTGATTTAAAATTATTTATAATG-T
128 AACCAAAAATGAAAAAGATTTCGATTTAAAATCATTTATAA-GAT
* * * *
20911890 TATAAGAA-CATTT-AAAGCGAGTAACTAGAGTTTCGATGGCATGAGGGACTATAAATTGACTTT
1 TATAA-AACCATTTAAAAGCGAGTAACTAGACTTTCGAAGGCATGAGTGACTATAAATGGACTTT
* * * *
20911953 TCTTGCCAATGGATGGCATCCGTTTCATGTTT-CTAGATTCAAACATCCAATTAGGATTGATTTT
65 TCTTGTCAATGGATGGCATCCGCTTCATGTTTCCTA-ATGCAAACATCCAATTATGATT-ATTTT
*
20912017 AACCAAAAATGAAAAAGATTT-TATTTTAAAATCATTTATAAGAT
128 AACCAAAAATGAAAAAGATTTCGA-TTTAAAATCATTTATAAGAT
* * * * * *
20912061 TATAAAACCATTTAAAA-CGAGTAACAAGGCTTGCGATGGCATGGGTGACTATAAATGGAATTTT
1 TATAAAACCATTTAAAAGCGAGTAACTAGACTTTCGAAGGCATGAGTGACTATAAATGGACTTTT
* * * * * *
20912125 CTTGTTAACGGAT-GCATCCGCTTCATGTTTTCC-AATGCAAACATTCAAATATAATATGTTTTA
66 CTTGTCAATGGATGGCATCCGCTTCATG-TTTCCTAATGCAAACATCCAATTATGAT-TATTTTA
* * *
20912188 ACCAAAAA-GAAAATGGATTTTGATTTAAAATCATTTATAAGTT
129 ACCAAAAATGAAAA-AGATTTCGATTTAAAATCATTTATAAGAT
* * * ** * * *
20912231 TATAAAACTACTT-AAAGCAAGTAA-TAGTGGTTTCAAAGGCATGAGTAACTATAAATGGACGTT
1 TATAAAACCATTTAAAAGCGAGTAACTAG-ACTTTCGAAGGCATGAGTGACTATAAATGGACTTT
* * * *
20912294 TCTTGTCAATTGAAGGCATCCGCTTCATGTTTCCCAATGCAAACATCCAAATATGATCTATTTTT
65 TCTTGTCAATGGATGGCATCCGCTTCATGTTTCCTAATGCAAACATCCAATTATGAT-TA-TTTT
* * * *
20912359 AACTAAAGATGAAAAAGATATCGATTTAAAATCATTTACAAGAT
128 AACCAAAAATGAAAAAGATTTCGATTTAAAATCATTTATAAGAT
** * * *
20912403 TATAAAACCATTT-AAAGTAAGTAACTAGGCTTTCGATGGCATGAGTGACTACAAATGGACTTTT
1 TATAAAACCATTTAAAAGCGAGTAACTAGACTTTCGAAGGCATGAGTGACTATAAATGGACTTTT
* * ** * * *
20912467 CTTGTCAACGGATTGCATTTGCTTCACGTTT-CTCAATGCAAACATCCAATTTTGATTGATTTTT
66 CTTGTCAATGGATGGCATCCGCTTCATGTTTCCT-AATGCAAACATCCAATTATGATT-ATTTTA
* * * **
20912531 ACAAAAAAT-AAAAATATTTTGATTTAAGGTCATTTATAAGAT
129 ACCAAAAATGAAAAAGATTTCGATTTAAAATCATTTATAAGAT
* * * * * * *
20912573 TATAAAACCA-TTAAAA-TGACTAATTAGCCTTTTGAAGGCATGAGTGACTAGAAATTGACTTTT
1 TATAAAACCATTTAAAAGCGAGTAACTAGACTTTCGAAGGCATGAGTGACTATAAATGGACTTTT
* * ** * *
20912636 CTTGTCAATGGATAGCTTTTGCTTCATGGTTCCCT-ATGCAAACATCCAATTATGATTTGTTTTA
66 CTTGTCAATGGATGGCATCCGCTTCAT-GTTTCCTAATGCAAACATCCAATTATGA-TTATTTTA
* *
20912700 ACCAAAAA--AAAAA-ATTTTGATTTAAAATCGTTTATAA-AT
129 ACCAAAAATGAAAAAGATTTCGATTTAAAATCATTTATAAGAT
* **
20912739 CATAAAGTCATTT-AAAGCGAGTAAC
1 TATAAAACCATTTAAAAGCGAGTAAC
20912764 AAGGAAGTAA
Statistics
Matches: 1657, Mismatches: 356, Indels: 115
0.78 0.17 0.05
Matches are distributed among these distances:
166 12 0.01
167 28 0.02
168 5 0.00
169 118 0.07
170 491 0.30
171 840 0.51
172 155 0.09
173 8 0.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (171 bp):
TATAAAACCATTTAAAAGCGAGTAACTAGACTTTCGAAGGCATGAGTGACTATAAATGGACTTTT
CTTGTCAATGGATGGCATCCGCTTCATGTTTCCTAATGCAAACATCCAATTATGATTATTTTAAC
CAAAAATGAAAAAGATTTCGATTTAAAATCATTTATAAGAT
Found at i:20914130 original size:329 final size:328
Alignment explanation
Indices: 20913105--20914740 Score: 1466
Period size: 329 Copynumber: 4.9 Consensus size: 328
20913095 AATTCGAACC
* * * **
20913105 AAAATGAAAAAAGATTTTGATTTAAAATCATTTGTAAGACTAAAAATACCATTTAAAGTGAGTAA
1 AAAATG-AAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAA-ACCATTTAAAGCAAGTAA
* * * * * * *
20913170 CAAAGCTTTCGAGGGCAT-ATCTGACTATAAATGGACTTTTCTTGTCAACAAATGCCTTTCGGTT
64 CTAAGCTTTCAATGGCATGA-GTGACTATAAATGGACTTTTCTTGTCAACAAATGGCATTCGCTT
* * * * * * *
20913234 CATGTTTCCTGACGCAAACATCGAATTATAATCTATTTTAACTAAAAACAAAAAATATTTCAATT
128 CACGTTTCCTGATGCAAACATCCAATTATGATCTATTTTAACCAAAAA-TAAAAA-A----GATT
** * * ** *
20913299 TTAAATCTTTTCTAAATTATAAAATCATTTAAAATGAGTAACAACGTTTTTTATGGCATGAGTCA
187 TTAAA-----TCTAAATTATAAAATCATTTAAAGCGAGTAACAAGGCTTTCAATGGCATGAGTGA
** * * * *
20913364 CTATAAATAAAATTTTCTTATCAATGGATGGCATCTACTT-CATGTTTCCTGATCGAACATCCAA
247 CTATAAATGGAATTTTCTTGTCAATGGATGGCATCTACTTACA-GTTTCC-AAACAAACATCCAA
20913428 ATATAATATGTTTTAACT-
310 ATATAATATGTTTTAACTA
* * *
20913446 AAAATGAAAATGATTTTGATTTAAAATCATTTATAAGATTATAAAACTATTTAAAGTAAGTAAC-
1 AAAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACT
* * * *
20913510 AAGGCTTTCGAA--GCTATGAGTGACTATAAATGGACTTTTCTTATCAACAAAAGTCATTTGCTT
66 AA-GCTTTC-AATGGC-ATGAGTGACTATAAATGGACTTTTCTTGTCAACAAATGGCATTCGCTT
* * * * * * * *
20913573 CACGTTTCCTAATACAAACATCCAATTATGCTCTGTTTTAAGCAAAAATGAAAAAGATTTTCATT
128 CACGTTTCCTGATGCAAACATCCAATTATGATCTATTTTAACCAAAAATAAAAAAGATTTTAAAT
* * * * * *
20913638 ATAAATCAT-TAATCATTCAAAGCGAGTAACAAGGCTTTCAATGGCACGAGTGACTATAACTGGA
193 CTAAATTATAAAATCATTTAAAGCGAGTAACAAGGCTTTCAATGGCATGAGTGACTATAAATGGA
* * * * *
20913702 TTTTTCTTGTCAATGGATGGCATCCACTTA-ACGTTTCCAATGCAAACATCCAAATGTAATTTGT
258 ATTTTCTTGTCAATGGATGGCATCTACTTACA-GTTTCCAA-ACAAACATCCAAATATAATATGT
20913766 TTTAACTA
321 TTTAACTA
* ** * *
20913774 AAAAAGAAAAAGATTTCCATATAAAATCATTTATAACATTATAAAACCATTTAAAGCAAGTAACT
1 AAAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACT
* *
20913839 AAGCTTTCAATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAACAAAAGGCATTCACTTCAC
66 AAGCTTTCAATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAACAAATGGCATTCGCTTCAC
* * * * *
20913904 GTTTTCTGATGCAAACATCCAATTATGCTCTTTTTTAACCAAAAATGAAAAAGATTTTGAATCTA
131 GTTTCCTGATGCAAACATCCAATTATGATCTATTTTAACCAAAAATAAAAAAGATTTTAAATCTA
* *
20913969 ACTTATAAAATCATTTAAAGTGAGTAACAAGGCTTTCAATGGCATGAGTGACTATAAATGGAATT
196 AATTATAAAATCATTTAAAGCGAGTAACAAGGCTTTCAATGGCATGAGTGACTATAAATGGAATT
* * * *
20914034 TTCTTATCAATGGATGGCATCTGCTTAGCA-TTTCCAACACAAACATCCAAATGTAATTTGTTTT
261 TTCTTGTCAATGGATGGCATCTACTTA-CAGTTTCCAA-ACAAACATCCAAATATAATATGTTTT
20914098 AACTA
324 AACTA
** * *
20914103 AAAATGAAAAAGATTTCCATTTAAAATCATTTATAAGATTATAAAACTATTTAAAGCGAGTAACT
1 AAAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACT
* *** ** * * *
20914168 AAGCTTTCAATGGCATGAGTGACTATAAATGGACTTTTCTTGCCAATGGATCACATCCACTTCAA
66 AAGCTTTCAATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAACAAATGGCATTCGCTTCAC
** * ** * * * *
20914233 GTTTCCCAAAGC-TGCATCCAATTATAATATATTTTAACAAAAAACAAAAAAGATTTTAATTTAA
131 GTTTCCTGATGCAAACATCCAATTATGATCTATTTTAACCAAAAATAAAAAAGA---T--TTT--
* * * * *
20914297 AATTATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTGTCAAAGGCATGGGTGACT
189 AA--A--TCTAA-ATTATAAAATCATTTAAAGCGAGTAACAAGGCTTTCAATGGCATGAGTGACT
* * * *
20914362 ATAAAT-AAACTTTTCTTGTCAATGGATGGCTTTCT-TTTTCATGTTTCCCAATGA-AAACATCC
249 ATAAATGGAA-TTTTCTTGTCAATGGATGGC-ATCTACTTACA-GTTT-CCAA--ACAAACATCC
* * *
20914424 AACTATGATATGTTTTAACCA
308 AAATATAATATGTTTTAACTA
* * * * *
20914445 AAAACGAGAAACATTTTGATTTAAAATCATTGATAAGATTATAAAACCATTTAAAGCAAGTAATT
1 AAAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACT
* ** * * **
20914510 AGGCTTTTGATGGCATGAATGACTATAAATGGACTTTTCTTATCAACGGATGGCA-TCTGCTTCA
66 AAGCTTTCAATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAACAAATGGCATTC-GCTTCA
* * * * * ** *
20914574 CATTTCTTGATGCAAACATCCAAATATGATCTATTTGAAGCATAATCAATAAATATTTTGATTTA
130 CGTTTCCTGATGCAAACATCCAATTATGATCTATTTTAACCA-AA--AATAAA-A--AAGATTTT
* * *
20914639 AAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTTACTAGGCTTT-AGATGGCATGAGTGA
189 AAATC-----TAA-ATTATAAAATCATTTAAAGCGAGTAACAAGGCTTTCA-ATGGCATGAGTGA
*
20914703 CTATAAATGGACTTTTCTTGTCAATGGATGGCATCTAC
247 CTATAAATGGAATTTTCTTGTCAATGGATGGCATCTAC
20914741 CTCATGTTTT
Statistics
Matches: 1068, Mismatches: 180, Indels: 92
0.80 0.13 0.07
Matches are distributed among these distances:
326 1 0.00
327 103 0.10
328 210 0.20
329 241 0.23
331 2 0.00
333 9 0.01
335 1 0.00
337 2 0.00
338 9 0.01
339 108 0.10
340 111 0.10
341 13 0.01
342 148 0.14
343 96 0.09
344 5 0.00
346 6 0.01
347 1 0.00
349 2 0.00
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.34
Consensus pattern (328 bp):
AAAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACT
AAGCTTTCAATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAACAAATGGCATTCGCTTCAC
GTTTCCTGATGCAAACATCCAATTATGATCTATTTTAACCAAAAATAAAAAAGATTTTAAATCTA
AATTATAAAATCATTTAAAGCGAGTAACAAGGCTTTCAATGGCATGAGTGACTATAAATGGAATT
TTCTTGTCAATGGATGGCATCTACTTACAGTTTCCAAACAAACATCCAAATATAATATGTTTTAA
CTA
Found at i:20914670 original size:171 final size:170
Alignment explanation
Indices: 20912785--20914740 Score: 1313
Period size: 170 Copynumber: 11.6 Consensus size: 170
20912775 AAGATTTTGA
* * * * * * * * *
20912785 TTGATTTAAAATTATTTATAAGTTTATGAAACTATTTTAAGCAAGTAACCATGCTTTCTAA--GA
1 TTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTC-AATGGC
* * * * * ** * *
20912848 ATTGAGTAACTATAAATGGACTTTTCTTGTTAGT-GAAGGCATCTGCTTCATGTTTCCCAGTGTA
65 A-TGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTACTTCACATTTCCCAATGCA
* * * * *
20912912 AACATCCAATTATGATCTGTTTTAACTAAAAACGAAAAAGATT
129 AACATCCAAATATAATATATTTTAACAAAAAAC-AAAAAGATT
* * * ** * * *
20912955 TCGATCTAAAATCATTTATAAGGTTATAAAATGACTTTAAA-TGAGTAACTAGGTTTTCGAT--C
1 TTGATTTAAAATCATTTATAAGATTATAAAACCA-TTTAAAGCGAGTAACTAGGCTTTCAATGGC
* * * * * * * *
20913017 -T-A--AAATCATAAAGGGACTTTTCTTGTCAACGGATGGCATCTGCTTCACCTTTCCCTATGAA
65 ATGAGTGACT-ATAAATGGACTTTTCTTGTCAATGGATGGCATCTACTTCACATTTCCCAATGCA
* * ** *
20913078 AACAT-CAAATTTTGATCA-ATTCGAACCAAAATGA-AAAAAGATT
129 AACATCCAAA-TATAAT-ATATTTTAA-CAAAA-AACAAAAAGATT
* * * * * * * *
20913121 TTGATTTAAAATCATTTGTAAGACTAAAAATACCATTTAAAGTGAGTAACAAAGCTTTCGAGGGC
1 TTGATTTAAAATCATTTATAAGATTATAAA-ACCATTTAAAGCGAGTAACTAGGCTTTCAATGGC
* *** * * ** ** *
20913186 AT-ATCTGACTATAAATGGACTTTTCTTGTCAACAAAT-GCCT-TTCGGTTCATGTTTCCTGACG
65 ATGA-GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTAC--TTCACATTTCCCAATG
* * * *
20913248 CAAACATCGAATTATAATCTATTTTAACTAAAAACAAAAA-ATAT
127 CAAACATCCAAATATAATATATTTTAACAAAAAACAAAAAGAT-T
* * * * * ** * * * **
20913292 TTCAATTTTAAATCTTTTCTAA-ATTATAAAATCATTTAAAATGAGTAACAACGTTTTTTATGGC
1 TT-GATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCAATGGC
* ** * * ** ** *
20913356 ATGAGTCACTATAAATAAAATTTTCTTATCAATGGATGGCATCTACTTCATGTTTCCTGAT-CGA
65 ATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTACTTCACATTTCCCAATGCAA
* * ** *
20913420 ACATCCAAATATAATATGTTTTAACTAAAATGAAAATGATT
130 ACATCCAAATATAATATATTTTAACAAAAAACAAAAAGATT
* ** *
20913461 TTGATTTAAAATCATTTATAAGATTATAAAACTATTTAAAGTAAGTAACAAGGCTTTCGAA--GC
1 TTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTC-AATGGC
* *** * * * * * * *
20913524 TATGAGTGACTATAAATGGACTTTTCTTATCAACAAAAGTCATTTGCTTCACGTTTCCTAATACA
65 -ATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTACTTCACATTTCCCAATGCA
* ** * * **
20913589 AACATCCAATTATGCTCTGTTTTAAGCAAAAATGAAAAAGATT
129 AACATCCAAATATAATATATTTTAA-CAAAAAACAAAAAGATT
* * *
20913632 TTCA-TTATAAATCA--T-T---A--AT-----CATTCAAAGCGAGTAACAAGGCTTTCAATGGC
1 TTGATTTA-AAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCAATGGC
* * * * * *
20913683 ACGAGTGACTATAACTGGATTTTTCTTGTCAATGGATGGCATCCACTTAACGTTT-CCAATGCAA
65 ATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTACTTCACATTTCCCAATGCAA
* * * *
20913747 ACATCCAAATGTAATTTGTTTTAACTAAAAAAGAAAAAGATT
130 ACATCCAAATATAATATATTTTAAC-AAAAAACAAAAAGATT
** * * * *
20913789 TCCATATAAAATCATTTATAACATTATAAAACCATTTAAAGCAAGTAACTAAGCTTTCAATGGCA
1 TTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCAATGGCA
*** * * * **
20913854 TGAGTGACTATAAATGGACTTTTCTTGTCAACAAAAGGCAT-TCACTTCACGTTTTCTGATGCAA
66 TGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCT-ACTTCACATTTCCCAATGCAA
* ** * * **
20913918 ACATCCAATTATGCTCTTTTTTAACCAAAAATGAAAAAGATT
130 ACATCCAAATATAATATATTTTAA-CAAAAAACAAAAAGATT
* * * *
20913960 TTG------AATC-----TAA-CTTATAAAATCATTTAAAGTGAGTAACAAGGCTTTCAATGGCA
1 TTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCAATGGCA
* * * **
20914013 TGAGTGACTATAAATGGAATTTTCTTATCAATGGATGGCATCTGCTT-AGCATTT-CCAACACAA
66 TGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTACTTCA-CATTTCCCAATGCAA
* * * **
20914076 ACATCCAAATGTAATTTGTTTTAACTAAAAATGAAAAAGATT
130 ACATCCAAATATAATATATTTTAAC-AAAAAACAAAAAGATT
** * *
20914118 TCCATTTAAAATCATTTATAAGATTATAAAACTATTTAAAGCGAGTAACTAAGCTTTCAATGGCA
1 TTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCAATGGCA
* ** * * *
20914183 TGAGTGACTATAAATGGACTTTTCTTGCCAATGGATCACATCCACTTCA-AGTTTCCCAAAGC-T
66 TGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTACTTCACA-TTTCCCAATGCAA
* *
20914246 GCATCCAATTATAATATATTTTAACAAAAAACAAAAAAGATT
130 ACATCCAAATATAATATATTTTAACAAAAAAC-AAAAAGATT
* * * * *
20914288 TTAATTTAAAATTATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTGTCAAAGGCA
1 TTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCAATGGCA
* ** * ** ** *
20914353 TGGGTGACTATAAATAAACTTTTCTTGTCAATGGATGGCTTTCTTTTTCATGTTTCCCAATGAAA
66 TGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC-ATCTACTTCACATTTCCCAATGCAA
* * * * * *
20914418 ACATCCAACTATGATATGTTTTAACCAAAAACGAGAAACATT
130 ACATCCAAATATAATATATTTTAACAAAAAAC-AAAAAGATT
* * * **
20914460 TTGATTTAAAATCATTGATAAGATTATAAAACCATTTAAAGCAAGTAATTAGGCTTTTGATGGCA
1 TTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCAATGGCA
* * * * ***
20914525 TGAATGACTATAAATGGACTTTTCTTATCAACGGATGGCATCTGCTTCACATTTCTTGATGCAAA
66 TGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTACTTCACATTTCCCAATGCAAA
* * * * * *
20914590 CATCCAAATATGATCTATTTGAAGC-ATAATCAATAAATATT
131 CATCCAAATATAATATATTTTAA-CAAAAAACAA-AAAGATT
*
20914631 TTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTTACTAGGCTTT-AGATGGC
1 TTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCA-ATGGC
20914695 ATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTAC
65 ATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTAC
20914741 CTCATGTTTT
Statistics
Matches: 1402, Mismatches: 306, Indels: 155
0.75 0.16 0.08
Matches are distributed among these distances:
156 1 0.00
157 53 0.04
158 107 0.08
159 82 0.06
160 5 0.00
163 3 0.00
164 7 0.00
165 29 0.02
166 78 0.06
167 23 0.02
168 19 0.01
169 124 0.09
170 414 0.30
171 262 0.19
172 191 0.14
173 4 0.00
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.34
Consensus pattern (170 bp):
TTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCAATGGCA
TGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTACTTCACATTTCCCAATGCAAA
CATCCAAATATAATATATTTTAACAAAAAACAAAAAGATT
Found at i:20914786 original size:33 final size:33
Alignment explanation
Indices: 20914744--20914840 Score: 185
Period size: 33 Copynumber: 2.9 Consensus size: 33
20914734 CATCTACCTC
20914744 ATGTTTTTTGATGCAAACATCCAATTGTAATCG
1 ATGTTTTTTGATGCAAACATCCAATTGTAATCG
20914777 ATGTTTTTTGATGCAAACATCCAATTGTAATCG
1 ATGTTTTTTGATGCAAACATCCAATTGTAATCG
*
20914810 ATGTTTTTTGATGCAAACATCCAATTATAAT
1 ATGTTTTTTGATGCAAACATCCAATTGTAAT
20914841 GATATAATTA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 63 1.00
ACGTcount: A:0.32, C:0.14, G:0.13, T:0.40
Consensus pattern (33 bp):
ATGTTTTTTGATGCAAACATCCAATTGTAATCG
Found at i:20915116 original size:170 final size:171
Alignment explanation
Indices: 20914858--20916322 Score: 952
Period size: 171 Copynumber: 8.6 Consensus size: 171
20914848 TTAAAAAATA
** * * *
20914858 TTGATTTAAAATCATTTATAAGATTATAAACCCTATTTAAAGCAAGTAACAAAGCTTTTAAAGGT
1 TTGATTTAAAATCATTTATAAGATTATAAAATC-ATTTAAAGCAAGTAACAAGGCTTTTGAAGGC
* * * * * * * *
20914923 ATAATTGACTAAAAATAGACTTTTCTTGTCAGTGGACAGCTTGAGCTTCATGTTTTCTGATGCAA
65 ATGAGTGACTATAAATGGACTTTTCTTATCAATGGATAGCTTGAGCTTCACGTTTTCTGATGCAA
* *
20914988 ACATCCAACTATGATCTATTTTAACCAAAAAAGAAAATGATT
130 ACATCCAATTATGATCTATTTTAACCAAAAATGAAAATGATT
* * *
20915030 TTGATTTTAAATCATTTATAA-ATTACAAAATCATTTAAAGCGAGTAACAAGGCTTTTGAAGGCA
1 TTGATTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACAAGGCTTTTGAAGGCA
* * * * *** * *
20915094 TGGGTGACTATAAATGGACTTTTCTTATCAATAGTTGGCATCCTG-TTAAC-ATTTCTTGATGCA
66 TGAGTGACTATAAATGGACTTTTCTTATCAATGGATAGC-TTGAGCTTCACGTTTTC-TGATGCA
* * * *
20915157 AACAAT-CAATTTTGAT-TGATTTCAA--AGAAAATGAAAAGGACT
129 AAC-ATCCAATTATGATCT-ATTTTAACCA-AAAATGAAAATGATT
* * ** **
20915199 TCGATTTAAAATCATTTATAAGATTATAAAATCATTTTAAATG--AGTAACTAGGCTTACGATTG
1 TTGATTTAAAATCATTTATAAGATTATAAAATCA-TTTAAA-GCAAGTAACAAGGCTTTTGAAGG
* * * * * * *
20915262 CATGTGTGATTATAAATAGACTTTTCTCT-TCAATCGATGGCATT-CGCTTCACGTTTCCCT-AT
64 CATGAGTGACTATAAATGGACTTTTCT-TATCAATGGATAGC-TTGAGCTTCACGTTT-TCTGAT
* * * * *
20915324 GCAAACATTCAATTA-AAGT-TGATTTTGACTAAAAATGAAAAAGATT
126 GCAAACATCCAATTATGA-TCT-ATTTTAACCAAAAATGAAAATGATT
* * ** * ** *
20915370 TTAATTTAAAATCATTTATAAGATTAGAAAGCCATTTAAAGCGAGTAACAACACTTTCGAAGGCA
1 TTGATTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACAAGGCTTTTGAAGGCA
* * * * * *
20915435 TGAGTGACTGTAAATGTACTTTTCTTATCAAT-GAAAGGCATT-CGCATCA-GGTTTCTTGAT-C
66 TGAGTGACTATAAATGGACTTTTCTTATCAATGGATA-GC-TTGAGCTTCACGTTTTC-TGATGC
* * * *
20915496 TAAGCATCCAAATATAATC-AGTTTGAACCAAAAATGAAAAAT-ATT
128 -AAACATCCAATTATGATCTA-TTTTAACCAAAAATG-AAAATGATT
* ** ** * *
20915541 TTGATTTAAAATCATTTATTAGATTATAAAATCATTTAAAGCAAGTAAGTAGGC-CCTCAATGGA
1 TTGATTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACAAGGCTTTTGAA-GGC
* * * * * * * **
20915605 ATGAGTGACTATCAA-GAGATTTTTTTTTATCAACGGAT-GATATCTA-CTTCACATTTTCCAAT
65 ATGAGTGACTATAAATG-GA-CTTTTCTTATCAATGGATAGCT-T-GAGCTTCACGTTTTCTGAT
* * * * * *
20915667 GCAAACATTCAATTTTGAAT-GATTTCAATCAAAAATGAAAAAGA-T
126 GCAAACATCCAATTATG-ATCTATTTTAACCAAAAATGAAAATGATT
* * * * * * *
20915712 TCGATTTAAAATCATTTATAAGATTCTAAATTCATTCAAGGCGAGTAACAAGGCTTTTGAAGACA
1 TTGATTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACAAGGCTTTTGAAGGCA
* * * * *
20915777 TGAGTGACTATAGATGGACTTTTCTTGTCAATAGATTGCCTATGA--TTCACGTTTCCTGATGCA
66 TGAGTGACTATAAATGGACTTTTCTTATCAATGGATAG-CT-TGAGCTTCACGTTTTCTGATGCA
* *
20915840 AACATCCAATTATGATCTATTTTAACTAAAAAT-AAAAAGATT
129 AACATCCAATTATGATCTATTTTAACCAAAAATGAAAATGATT
* * * * * * * *
20915882 TCGATTTGAAATCACTTATAAG-CTATAACATCATTTAAAGCAAGTAACAAGGTTTTTTATGGCA
1 TTGATTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACAAGGCTTTTGAAGGCA
* * * * * * *
20915946 TGAGTGACTATAAATGGAATTTTCTAATCAATAGATGGCATCG-GGTTCACGTTTTCTAATGCAA
66 TGAGTGACTATAAATGGACTTTTCTTATCAATGGATAGC-TTGAGCTTCACGTTTTCTGATGCAA
* * * * *
20916010 ACATCCAAATATAATCTATTTTAAGCAAAAATGAAAAGGACT
130 ACATCCAATTATGATCTATTTTAACCAAAAATGAAAATGATT
* * * * * * * ** **
20916052 TCGATTTAAAATCATTTATAAGTTTATAAAA-CTACTCAAAGTAAATAATAAGGCTTTCAAAAAC
1 TTGATTTAAAATCATTTATAAGATTATAAAATC-ATTTAAAGCAAGTAACAAGGCTTTTGAAGGC
* ** * * ** * ** *
20916116 ATGAATGACTATAAATAAACTTTTCTTGTCAATGGATAACTTCTGCTTCACGTTTCCCAATGTAA
65 ATGAGTGACTATAAATGGACTTTTCTTATCAATGGATAGCTTGAGCTTCACGTTTTCTGATGCAA
* * * *
20916181 ACATCCTATTATGATTTGTTTTAACTAAAAA-GAAAAAAT-ATT
130 ACATCCAATTATGATCTATTTTAACCAAAAATG--AAAATGATT
* * * *
20916223 TTGATTTAAAATCATTTATAAG-CTATAAAATCATTTAAAGCAAGTAATAACG-TTTTCG-ATGC
1 TTGATTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACAAGGCTTTT-GAAGGC
* * * * *
20916285 AATGGGTGACTATAAATGAAATTTTCTTGTTAATGGAT
65 -ATGAGTGACTATAAATGGACTTTTCTTATCAATGGAT
20916323 GGCATCTGTA
Statistics
Matches: 1001, Mismatches: 235, Indels: 116
0.74 0.17 0.09
Matches are distributed among these distances:
168 3 0.00
169 166 0.17
170 345 0.34
171 396 0.40
172 81 0.08
173 10 0.01
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.35
Consensus pattern (171 bp):
TTGATTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACAAGGCTTTTGAAGGCA
TGAGTGACTATAAATGGACTTTTCTTATCAATGGATAGCTTGAGCTTCACGTTTTCTGATGCAAA
CATCCAATTATGATCTATTTTAACCAAAAATGAAAATGATT
Found at i:20916221 original size:682 final size:681
Alignment explanation
Indices: 20915013--20916269 Score: 1454
Period size: 682 Copynumber: 1.8 Consensus size: 681
20915003 CTATTTTAAC
* * * *
20915013 CAAAAAAGAAAATGATTTTGATTTTAAATCATTTATAAATTACAAAATCATTTAAAGCGAGTAAC
1 CAAAAAAGAAAAAGATTTCGATTTAAAATCATTTATAAATTACAAAATCATTCAAAGCGAGTAAC
* * *
20915078 AAGGCTTTTGAAGGCATGGGTGACTATAAATGGACTTTTCTTATCAATAGTTGGCATCCTGTTAA
66 AAGGCTTTTGAAGACATGAGTGACTATAAATGGACTTTTCTTATCAATAGTTGGCATCATGTTAA
* * *
20915143 CATTTCTTGATGCAAACAATCAATTTTGATTGATTTCAAAGAAAATGAAAAGGACTTCGATTTAA
131 CATTTCCTGATGCAAACAATCAATTATGATTGATTTCAAAGAAAATGAAAAAGACTTCGATTTAA
* * * * * *
20915208 AATCATTTATAAGATTATAAAATCATTTTAAATGAGTAACTAGGCTTACGATTGCATGTGTGATT
196 AATCACTTATAAGACTATAAAATCATTTTAAATGAGTAACAAGGCTTACGATGGCATGAGTGACT
* ** * * *
20915273 ATAAATAGACTTTTCTCTTCAATCGATGGCATTCGCTTCACGTTTCCCTATGCAAACATTCAATT
261 ATAAATAGAATTTTCTAATCAATAGATGGCATTCGCTTCACGTTTCCCTATGCAAACATCCAAAT
* * * *
20915338 AAAGTTGATTTTGACTAAAAATGAAAAAGATTTTAATTTAAAATCATTTATAAGATTAGAAAGCC
326 AAAGTTGATTTTAACTAAAAATGAAAAAGACTTCAATTTAAAATCATTTATAAGATTAGAAAACC
* * * * * ** * * **
20915403 ATTTAAAGCGAGTAACAACACTTTCGAAGGCATGAGTGACTGTAAATGTACTTTTCTTATCAATG
391 ACTCAAAGCAAATAACAACACTTTCAAAAACATGAATGACTATAAATAAACTTTTCTTATCAATG
* *** *
20915468 AAAGGCATTCGCATCAGGTTTCTTGATCTAAGCATCCAAATATAATCAGTTTGAACCAAAAATGA
456 AAA-GCATTCGCATCACGTTTCCCAATCTAAACATCCAAATATAATCAGTTTGAACCAAAAATGA
* *
20915533 AAAATATTTTGATTTAAAATCATTTATTAGATTATAAAATCATTTAAAGCAAGTAAGTAGGCCCT
520 AAAATATTTTGATTTAAAATCATTTATAAG-CTATAAAATCATTTAAAGCAAGTAAGTAGGCCCT
20915598 CAATGGAATGAGTGACTATCAAGAGATTTTTTTTTATCAACGGATGATATCTACTTCACATTTTC
584 CAATGGAATGAGTGACTATCAAGAGATTTTTTTTTATCAACGGATGATATCTACTTCACATTTTC
20915663 CAATGCAAACATTCAATTTTGAATGATTTCAAT
649 CAATGCAAACATTCAATTTTGAATGATTTCAAT
* * *
20915696 CAAAAATGAAAAAGA-TTCGATTTAAAATCATTTATAAGATT-CTAAATTCATTCAAGGCGAGTA
1 CAAAAAAGAAAAAGATTTCGATTTAAAATCATTTATAA-ATTAC-AAAATCATTCAAAGCGAGTA
* * *
20915759 ACAAGGCTTTTGAAGACATGAGTGACTATAGATGGACTTTTCTTGTCAATAGATT-GCCT-ATGA
64 ACAAGGCTTTTGAAGACATGAGTGACTATAAATGGACTTTTCTTATCAATAG-TTGGCATCATG-
* * * *
20915822 TTCACGTTTCCTGATGCAAAC-ATCCAATTATGATCT-ATTTTAACTA-AAAAT-AAAAAGATTT
127 TTAACATTTCCTGATGCAAACAAT-CAATTATGAT-TGATTTCAA--AGAAAATGAAAAAGACTT
* * * ***
20915883 CGATTTGAAATCACTTATAAG-CTATAACATCA-TTTAAA-GCAAGTAACAAGGTTTTTTATGGC
188 CGATTTAAAATCACTTATAAGACTATAAAATCATTTTAAATG--AGTAACAAGGCTTACGATGGC
* * *
20915945 ATGAGTGACTATAAATGGAATTTTCTAATCAATAGATGGCA-TCGGGTTCACGTTT-TCTAATGC
251 ATGAGTGACTATAAATAGAATTTTCTAATCAATAGATGGCATTC-GCTTCACGTTTCCCT-ATGC
* *
20916008 AAACATCCAAATATAA-TCT-ATTTTAAGC-AAAAATGAAAAGGACTTCGATTTAAAATCATTTA
314 AAACATCCAAATA-AAGT-TGATTTTAA-CTAAAAATGAAAAAGACTTCAATTTAAAATCATTTA
* * * * * **
20916070 TAAGTTTATAAAACTACTCAAAGTAAATAATAAGGCTTTCAAAAACATGAATGACTATAAATAAA
376 TAAGATTAGAAAACCACTCAAAGCAAATAACAACACTTTCAAAAACATGAATGACTATAAATAAA
* * * * * * **
20916135 CTTTTCTTGTCAATGGATAA-C-TTCTGCTTCACGTTTCCCAATGTAAACATCCTATTATGATTT
441 CTTTTCTTATCAAT-GA-AAGCATTC-GCATCACGTTTCCCAATCTAAACATCCAAATATAATCA
* *
20916198 GTTTTAACTAAAAA-GAAAAAATATTTTGATTTAAAATCATTTATAAGCTATAAAATCATTTAAA
503 GTTTGAACCAAAAATG-AAAAATATTTTGATTTAAAATCATTTATAAGCTATAAAATCATTTAAA
20916262 GCAAGTAA
567 GCAAGTAA
20916270 TAACGTTTTC
Statistics
Matches: 473, Mismatches: 82, Indels: 40
0.79 0.14 0.07
Matches are distributed among these distances:
680 1 0.00
681 38 0.08
682 273 0.58
683 150 0.32
684 10 0.02
685 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.34
Consensus pattern (681 bp):
CAAAAAAGAAAAAGATTTCGATTTAAAATCATTTATAAATTACAAAATCATTCAAAGCGAGTAAC
AAGGCTTTTGAAGACATGAGTGACTATAAATGGACTTTTCTTATCAATAGTTGGCATCATGTTAA
CATTTCCTGATGCAAACAATCAATTATGATTGATTTCAAAGAAAATGAAAAAGACTTCGATTTAA
AATCACTTATAAGACTATAAAATCATTTTAAATGAGTAACAAGGCTTACGATGGCATGAGTGACT
ATAAATAGAATTTTCTAATCAATAGATGGCATTCGCTTCACGTTTCCCTATGCAAACATCCAAAT
AAAGTTGATTTTAACTAAAAATGAAAAAGACTTCAATTTAAAATCATTTATAAGATTAGAAAACC
ACTCAAAGCAAATAACAACACTTTCAAAAACATGAATGACTATAAATAAACTTTTCTTATCAATG
AAAGCATTCGCATCACGTTTCCCAATCTAAACATCCAAATATAATCAGTTTGAACCAAAAATGAA
AAATATTTTGATTTAAAATCATTTATAAGCTATAAAATCATTTAAAGCAAGTAAGTAGGCCCTCA
ATGGAATGAGTGACTATCAAGAGATTTTTTTTTATCAACGGATGATATCTACTTCACATTTTCCA
ATGCAAACATTCAATTTTGAATGATTTCAAT
Found at i:20927640 original size:2 final size:2
Alignment explanation
Indices: 20927633--20927669 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
20927623 TATAATGTTG
*
20927633 AT AT AT AT AT AT AT AT AT CT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
20927670 CTATGCCATA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:20929052 original size:170 final size:170
Alignment explanation
Indices: 20928549--20931765 Score: 2396
Period size: 171 Copynumber: 18.9 Consensus size: 170
20928539 ACAGCATCGA
* * * * * * ** * *
20928549 CTTCACGTTTTCTAATGCAAACATCCAAATATAAACTATTTTAATAAAAAATGAAAAGGACTTAT
1 CTTCATGTTTCCTAATGCAAACATCCAATTATGATC-GTTTTAACCAAAAATGAAAAAGA-TTTT
* * * ** * * *
20928614 -ATTTAAAATCATTTATAAGTTTATAAAACTACTTAAAGCAAGTAACATGGCTTTCAAAGGCATA
64 GATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATG
* * * * ** * * *
20928678 AGTAACTATCAATGGACGTTTCTTATCAATGGACAGCATCCA
129 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCG
* * * * *
20928720 CCTCACGTTTCCCAATGCAAACATCCAA-TAGTTATAGATTTTAACCAAAAATGAAAAAGATTTT
1 CTTCATGTTTCCTAATGCAAACATCCAATTA-TGATCG-TTTTAACCAAAAATGAAAAAGATTTT
* * * *
20928784 -AGTTTAAAATCATTTATAAGATTATAAAATCATTTAAATTAAGTAACAAGTCTTTCGAA--CAA
64 GA-TTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGC-A
* * * *
20928846 TTGACTAAGTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCG
127 -TGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCG
* ** * * *
20928891 CTACACATTTCTTGATGCAAACATCCAATTATGATACGTTTTAACCAAAAATGAAAAACATTTTG
1 CTTCATGTTTCCTAATGCAAACATCCAATTATGAT-CGTTTTAACCAAAAATGAAAAAGATTTTG
* * * * ** * *
20928956 ATTTTAAATCATTTGTAA-ATCATAAAATCATTTAAAGCAAGTAACAAGGCATTT-GATGACATG
65 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGC-TTTCGAAGGCATG
* * **
20929019 AATGACTATAAATGGATTTTTCTTGTCAATGGATGG-AAT-G
129 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCG
** * * * * * * **
20929059 --T-ATGTTTCCCGATGCAAACATCCAA-AAGTAATTGTTTTAACCAAACATGTAAAGGATTTAC
1 CTTCATGTTTCCTAATGCAAACATCCAATTA-TGATCGTTTTAACCAAAAATGAAAAAGATTTTG
* * * * * **
20929120 ATTTGAAATCATTTATAAGTTTATAAAATCACTTAAAGTGAGTAACTAGGCTTTC-AATGGTGTG
65 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAA-GGCATG
* * * *
20929184 AGTGACTCTAAATGGACTTTTCTTGTCAATGGATGGCATCCA
129 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCG
* * * * * **
20929226 CTACATGTTTCCTAAAGCAAATATCCAATTATAATTGATTTTAACCAAAAACAAAAAAG-TGTTT
1 CTTCATGTTTCCTAATGCAAACATCCAATTATGATCG-TTTTAACCAAAAATGAAAAAGAT-TTT
* * * ** *
20929290 CATTCAAAATCTTTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTCTT-GAAGGTAT
64 GATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCT-TTCGAAGGCAT
* * * * *
20929354 GAGTGACTTTAAATGGACTTTTCTTGTTAGTGGATGGCATCCG
128 GAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCG
* * * * * *
20929397 CTTCACGTTTCTTGATGCAAACATCCAATTGTGATTGATTTTAACCAAAAATGAAATAGATTTTG
1 CTTCATGTTTCCTAATGCAAACATCCAATTATGATCG-TTTTAACCAAAAATGAAAAAGATTTTG
* * * *
20929462 ACTTAAAATCATTTACAAGATTATAAAACCATTTAAAGTGAGTAACAAGACTTTCGAAGGCATTA
65 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGA
* * * *
20929527 ATGACTATAAAATGGA-TTTCTTTTGTCAATGGAAGGC-ATCTG
130 GTGACTAT-AAATGGACTTT-TCTTGTCAATGGATGGCTTTC-G
* * * *
20929569 CTTCATGTTTCCTAATGCAAACTTCCAAATATGATC-TATTTGAACAAAAAATGAAAAAGATTTC
1 CTTCATGTTTCCTAATGCAAACATCCAATTATGATCGT-TTT-AACCAAAAATGAAAAAGATTTT
* * * * * * * *
20929633 AATTTAAAACCATTTATATGATTATAAGACCACTTAAAGTGAGTAGCTAGGCTTTCGATGGCATG
64 GATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATG
* * *
20929698 AGTGACTATAAATAGACTTTTCTTGTGAATGGATGGCATTCG
129 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCG
* * *
20929740 CTTCATCTTTCCTAATGCAAACACCCAATTATGATCGATCTTAACCAAAAATGAAAAAGATTTTG
1 CTTCATGTTTCCTAATGCAAACATCCAATTATGATCG-TTTTAACCAAAAATGAAAAAGATTTTG
** * * ** * * **
20929805 GCTTAAAATCATTTATAAGTTTATAAAACTATTTAAAAAGAGGAACAAAGCTTTTAAAGGCATGA
65 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGA
* ** * * *
20929870 GTTACTATAAATAAACTTTTGTTGTCAATGGATGGCTTCCA
130 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCG
* * * ** * * * * *
20929911 CTTCATATTTCCCACTGCAAACATGAAATTTTGATCGATTTTATCCAAAAATAAAAAATATTATG
1 CTTCATGTTTCCTAATGCAAACATCCAATTATGATCG-TTTTAACCAAAAATGAAAAAGATTTTG
* * * * *
20929976 GTTTAAAATCTTTTAGAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTTGAAGCCATGA
65 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGA
* * * *
20930041 GTGACTATAAATAGACTTTTCTTATCAATGGATAGCTTTTG
130 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCG
* * * * * *
20930082 C-TCTTCGTTT-TTCAATACAAACATCCAATTCTGATCTGTTGTAACCAAAAGTGAAAAAGATTT
1 CTTCAT-GTTTCCT-AATGCAAACATCCAATTATGATC-GTTTTAACCAAAAATGAAAAAGATTT
* * * ** * * *
20930145 TGATTGAAAATCATTTAT-ATATTATAAAACTATTTAAAGCAAGTAAAAAGGTTTTTCAAAGGC-
63 TGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGG-CTTTCGAAGGCA
* *
20930208 TAGAGTGACTATAAATGAATTTTTCTTGTCAATGGATGGCTTTCG
127 T-GAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCG
* * * * * ** *
20930253 TTTCATGTTACCTGATGCAAACATCCAATTATGATTTGTTTTAACTAAAAACAAAAAATATTTTG
1 CTTCATGTTTCCTAATGCAAACATCCAATTATGA-TCGTTTTAACCAAAAATGAAAAAGATTTTG
** * * * *
20930318 ATCCAAAATCATTTAT-ATATTATAAAACCATTTAAAGCGAGTAA-AAGGGCTTTTGAAAG-ATT
65 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAA-GGCTTTCGAAGGCA-T
* * **
20930380 GAGTGACT-TCAAATGGACTTTTCTTATCTATGGATGGCTTTTA
128 GAGTGACTAT-AAATGGACTTTTCTTGTCAATGGATGGCTTTCG
* * * * * * * * **
20930423 CTTGACGCTTCCCAATGTAAATATCCAAATATGATCCGTTTGAACCAAAAATGAAAAAGATTTCA
1 CTTCATGTTTCCTAATGCAAACATCCAATTATGAT-CGTTTTAACCAAAAATGAAAAAGATTTTG
* * * * * * * *
20930488 ATCTACAATCATTTATATGATTATGAAACCATTTAAAATGAGTAACTAGGCTTTTGATGGCATGA
65 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGA
* * * * *
20930553 GTGACAATAAATGAACTTTTCTTATCAATGGATGGCATCCG
130 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCG
*** * * ** * * **
20930594 CTTCATGTTT-CTCAATGCAATTGTCAAACTT-TGGTTATTTTAACAAAAAATGAAAAAGACTCC
1 CTTCATGTTTCCT-AATGCAAACATCCAA-TTATGATCGTTTTAACCAAAAATGAAAAAGATTTT
* * * *
20930657 AATTTAAAATCATTTATAAGATTGTAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAACGCATT
64 GATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATG
* *
20930722 AGTGACTGTAAATGGACTTTTCTTGTCAATGGATGACTTGT-G
129 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTT-TCG
* * * * * *
20930764 CTTTATGTTTCCCAATGCAAACATCTAATCATGATCTGTTTTAACCAAAAATAAAAAAGATTTCG
1 CTTCATGTTTCCTAATGCAAACATCCAATTATGATC-GTTTTAACCAAAAATGAAAAAGATTTTG
* * * * * ** * **
20930829 ACTTAAACTCAATTATAA-ATTATAAAATCATTTAAAGTGAGTAACGATACTTTCTATTGCATG-
65 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGA
* * * *
20930892 GTTGACTACAAATGAAATTTTCTTG-CTAATGGATAGCATTT-G
130 G-TGACTATAAATGGACTTTTCTTGTC-AATGGATGGC-TTTCG
* * * * * * * * *
20930934 CTTCACGTTTTCTAAAGAAAACATCCAAGTATAATCTGTTTTAACTAAAAATGTAAAGGATTTTG
1 CTTCATGTTTCCTAATGCAAACATCCAATTATGATC-GTTTTAACCAAAAATGAAAAAGATTTTG
* * * ** * * *
20930999 ATTTAAAATCATTTATAAGTTTATAAAACTACTTAAAGCAAGTAACAAGACCTTCGAAGACATGA
65 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGA
* * * * *
20931064 ATGACTAT-AATAGACTTTTCTTGTCAATGAAAGGCTTTCA
130 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCG
** * * * ** *
20931104 CTTTCATGTTTCCCGATGCAAACATCCAAGTATGATATGTTTTAACCTAAAACAAAAAAGATTTC
1 C-TTCATGTTTCCTAATGCAAACATCCAATTATGAT-CGTTTTAACCAAAAATGAAAAAGATTTT
* * * ** ** *
20931169 AATTTAAAATCATTTACAAGATTATAAAACTATTT-AAGTGAGTAATTAGATTTTCGATGGCATG
64 GATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATG
* * * * *
20931233 AGTGACTATAAATGGACTTTCCTCGTCAATGGATGGCATCCA
129 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCG
* * * * * * *
20931275 CTTCATGTTTTCTTATGCAAACATCAAATTTTGATTGATTTAAACCAAAAATG-AAAGGTATTTT
1 CTTCATGTTTCCTAATGCAAACATCCAATTATGATCG-TTTTAACCAAAAATGAAAAAG-ATTTT
* * * * *
20931339 GATTTAAAATCATTTATAATG-TTATAAAACC-TTAAAAGAGAGTAATAAGGCTTTTG-AGAACA
64 GATTTAAAATCATTTATAA-GATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAG-GCA
* * * *
20931401 TGAGTGTCAATAAATGGGCTTTTCTTGTCAATGGATGGCTTTCC
127 TGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCG
* * * ** * * *
20931445 CTAT-ACGTTTCTTGATGCAAATGTCCAATTGTGATCTGCTTTAACC--AAA-GCAAAATGATTT
1 CT-TCATGTTTCCTAATGCAAACATCCAATTATGATC-GTTTTAACCAAAAATG-AAAAAGATTT
* * * * * *** * *
20931506 AGATTTAAAATTATTTATAA-ATTATAAAATCATTTAAAGCGAGTTACATTACCTTCGAAGCCAT
63 TGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCAT
* * * * * *
20931570 GAGTGACTATAAATGGACTTTTCTTATTAATGGAAGGCATCCA
128 GAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCG
* * * ** * *
20931613 TTTCATGTTTCCTTATGCAAACATCCTAA-TATGATCTATTTTAAGTACAACA--AAAAACATTT
1 CTTCATGTTTCCTAATGCAAACATCC-AATTATGATC-GTTTTAACCA-AAAATGAAAAAGATTT
* * * * * * *
20931675 CGATTTAAAATCATTTATAAGATTATAAGATCA-TTAAAGTGAGTAACTAGGCTTTTGATGGAAT
63 TGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCAT
20931739 GAGTGACTGA-AAATGGA-TTGTTCTTGT
128 GAGTGACT-ATAAATGGACTT-TTCTTGT
20931766 TAGTTGCTTG
Statistics
Matches: 2391, Mismatches: 566, Indels: 180
0.76 0.18 0.06
Matches are distributed among these distances:
164 43 0.02
165 85 0.04
166 1 0.00
167 11 0.00
168 111 0.05
169 94 0.04
170 713 0.30
171 1175 0.49
172 157 0.07
173 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.34
Consensus pattern (170 bp):
CTTCATGTTTCCTAATGCAAACATCCAATTATGATCGTTTTAACCAAAAATGAAAAAGATTTTGA
TTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAG
TGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCG
Found at i:20930978 original size:341 final size:339
Alignment explanation
Indices: 20928549--20931765 Score: 2212
Period size: 341 Copynumber: 9.5 Consensus size: 339
20928539 ACAGCATCGA
* * * * * * * * *
20928549 CTTCACGTTTTCTAATGCAAACATCCAAATATAAACTATTTTAATAAAAAATGAAAAGGACTTAT
1 CTTCATGTTTCCTAATGCAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAGA-TTTT
* * * * * *
20928614 -ATTTAAAATCATTTATAAGTTTATAAAACTACTTAAAGCAAGTAACATGGCTTTCAAAGGCATA
65 GATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTCGAAGGCATG
* * * * * *** * *
20928678 AGTAACTATCAATGGACGTTTCTTATCAATGGA-CAGCATCCACCTCACGTTTCCCAATGCAAAC
130 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGA-C-TTTGCTTTACGTTTCCCAATGCAAAC
* * * *
20928742 ATCCAATAGTTAT-AGATTTTAACCAAAAATGAAAAAGATTT-TAGTTTAAAATCATTTATAAGA
193 ATCCAATA-TGATCTG-TTTTAACCAAAAATGAAAAAGATTTCGA-CTTAAAATCATTTATAAGA
* * * * * * * *
20928805 TTATAAAATCATTTAAATTAAGTAACAAGTCTTTCGAA--CAATTGACTAAGTATAAAT-AGACT
255 TTATAAAA-CATTTAAAGTGAGTAACAAGACTTTCTAAGGC-A-TGAGTGACTATAAATGA-AAT
20928867 TTTCTTGTCAATGGATGGC-TTTCG
316 TTTCTTGTCAATGGATGGCATTT-G
* ** * * * *
20928891 CTACACATTTCTTGATGCAAACATCCAATTATGATAC-GTTTTAACCAAAAATGAAAAACATTTT
1 CTTCATGTTTCCTAATGCAAACATCCAATTATGAT-CTGTTTTAACAAAAAATGAAAAAGATTTT
* * * * * *
20928955 GATTTTAAATCATTTGTAA-ATCATAAAATCATTTAAAGCAAGTAACAAGGCATTT-GATGACAT
65 GATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGC-TTTCGAAGGCAT
* * * * *
20929018 GAATGACTATAAATGGATTTTTCTTGTCAATGGATGGA--ATG---TATGTTTCCCGATGCAAAC
129 GAGTGACTATAAATGGACTTTTCTTGTCAATGGAT-GACTTTGCTTTACGTTTCCCAATGCAAAC
* * * * * * * *
20929078 ATCCAAAAGTAAT-TGTTTTAACCAAACATGTAAAGGATTTAC-ATTTGAAATCATTTATAAGTT
193 ATCCAATA-TGATCTGTTTTAACCAAAAATGAAAAAGATTT-CGACTTAAAATCATTTATAAGAT
* * * ** * * *
20929141 TATAAAATCACTTAAAGTGAGTAACTAGGCTTTC-AATGGTGTGAGTGACTCTAAATGGACTTTT
256 TATAAAA-CATTTAAAGTGAGTAACAAGACTTTCTAA-GGCATGAGTGACTATAAATGAAATTTT
***
20929205 CTTGTCAATGGATGGCATCCA
319 CTTGTCAATGGATGGCATTTG
* * * * * **
20929226 CTACATGTTTCCTAAAGCAAATATCCAATTATAAT-TGATTTTAACCAAAAACAAAAAAG-TGTT
1 CTTCATGTTTCCTAATGCAAACATCCAATTATGATCTG-TTTTAACAAAAAATGAAAAAGAT-TT
* * * *
20929289 TCATTCAAAATCTTTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTCTT-GAAGGTA
64 TGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCT-TTCGAAGGCA
* * * * ** * ***
20929353 TGAGTGACTTTAAATGGACTTTTCTTGTTAGTGGATGGCATCCGCTTCACGTTTCTTGATGCAAA
128 TGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGAC-TTTGCTTTACGTTTCCCAATGCAAA
* * * *
20929418 CATCCAATTGTGAT-TGATTTTAACCAAAAATGAAATAGATTTTGACTTAAAATCATTTACAAGA
192 CATCCAA-TATGATCTG-TTTTAACCAAAAATGAAAAAGATTTCGACTTAAAATCATTTATAAGA
* * * *
20929482 TTATAAAACCATTTAAAGTGAGTAACAAGACTTTCGAAGGCATTAATGACTATAAAATG-GATTT
255 TTATAAAA-CATTTAAAGTGAGTAACAAGACTTTCTAAGGCATGAGTGACTAT-AAATGAAATTT
* * *
20929546 CTTTTGTCAATGGAAGGCATCTG
318 -TCTTGTCAATGGATGGCATTTG
* * * * **
20929569 CTTCATGTTTCCTAATGCAAACTTCCAAATATGATCTATTTGAACAAAAAATGAAAAAGATTTCA
1 CTTCATGTTTCCTAATGCAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAGATTTTG
* * * * ** * * *
20929634 ATTTAAAACCATTTATATGATTATAAGACCACTTAAAGTGAGTAGCTAGGCTTTCGATGGCATGA
66 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGA
* * * * * *
20929699 GTGACTATAAATAGACTTTTCTTGTGAATGGATGGCATTCGCTTCATC-TTTCCTAATGCAAACA
131 GTGACTATAAATGGACTTTTCTTGTCAATGGATGAC-TTTGCTTTA-CGTTTCCCAATGCAAACA
* * * * *
20929763 CCCAATTATGATC-GATCTTAACCAAAAATGAAAAAGATTTTGGCTTAAAATCATTTATAAGTTT
194 TCCAA-TATGATCTG-TTTTAACCAAAAATGAAAAAGATTTCGACTTAAAATCATTTATAAGATT
** * *
20929827 ATAAAACTATTTAAAAAGAGGAACAA-AGCTTT-TAAAGGCATGAGTTACTATAAAT-AAACTTT
257 ATAAAAC-ATTTAAAGTGAGTAACAAGA-CTTTCT-AAGGCATGAGTGACTATAAATGAAA-TTT
* **
20929889 TGTTGTCAATGGATGGC-TTCCA
318 TCTTGTCAATGGATGGCATT-TG
* * * ** * * * * * *
20929911 CTTCATATTTCCCACTGCAAACATGAAATTTTGATC-GATTTTATCCAAAAATAAAAAATATTAT
1 CTTCATGTTTCCTAATGCAAACATCCAATTATGATCTG-TTTTAACAAAAAATGAAAAAGATTTT
* * * ** * *
20929975 GGTTTAAAATCTTTTAGAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTTGAAGCCATG
65 GATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTCGAAGGCATG
* * ** *
20930040 AGTGACTATAAATAGACTTTTCTTATCAATGGAT-AGCTTTTGCTCTT-CGTTTTTCAATACAAA
130 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGA-C-TTTGCT-TTACGTTTCCCAATGCAAA
* * * * *
20930103 CATCCAATTCTGATCTGTTGTAACCAAAAGTGAAAAAGATTTTGA-TTGAAAATCATTTAT-ATA
192 CATCCAA-TATGATCTGTTTTAACCAAAAATGAAAAAGATTTCGACTT-AAAATCATTTATAAGA
** * ** * *
20930166 TTATAAAACTATTTAAAGCAAGTAAAAAGGTTTTTCAAAGGC-TAGAGTGACTATAAATGAATTT
255 TTATAAAAC-ATTTAAAGTGAGTAACAA-GACTTTCTAAGGCAT-GAGTGACTATAAATGAAATT
20930230 TTCTTGTCAATGGATGGC-TTTCG
317 TTCTTGTCAATGGATGGCATTT-G
* * * * * ** *
20930253 TTTCATGTTACCTGATGCAAACATCCAATTATGATTTGTTTTAACTAAAAACAAAAAATATTTTG
1 CTTCATGTTTCCTAATGCAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAGATTTTG
** * * * *
20930318 ATCCAAAATCATTTAT-ATATTATAAAACCATTTAAAGCGAGTAA-AAGGGCTTTTGAAAG-ATT
66 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACAA-GGCTTTCGAAGGCA-T
* * * * * * *
20930380 GAGTGACT-TCAAATGGACTTTTCTTATCTATGGATGGCTTTTACTTGACGCTTCCCAATGTAAA
129 GAGTGACTAT-AAATGGACTTTTCTTGTCAATGGATGAC-TTTGCTTTACGTTTCCCAATGCAAA
* * * * * *
20930444 TATCCAAATATGATCCGTTTGAACCAAAAATGAAAAAGATTTC-AATCTACAATCATTTATATGA
192 CATCC-AATATGATCTGTTTTAACCAAAAATGAAAAAGATTTCGACT-TAAAATCATTTATAAGA
* * * * * * *
20930508 TTATGAAACCATTTAAAATGAGTAACTAGGCTTT-TGATGGCATGAGTGACAATAAATGAACTTT
255 TTAT-AAAACATTTAAAGTGAGTAACAAGACTTTCT-AAGGCATGAGTGACTATAAATGAAATTT
* **
20930572 TCTTATCAATGGATGGCATCCG
318 TCTTGTCAATGGATGGCATTTG
*** * * * * *
20930594 CTTCATGTTT-CTCAATGCAATTGTCAAACTT-TGGT-TATTTTAACAAAAAATGAAAAAGACTC
1 CTTCATGTTTCCT-AATGCAAACATCCAA-TTATGATCTGTTTTAACAAAAAATGAAAAAGATTT
** * ** *
20930656 CAATTTAAAATCATTTATAAGATTGTAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAACGCAT
64 TGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTCGAAGGCAT
* * *
20930721 TAGTGACTGTAAATGGACTTTTCTTGTCAATGGATGACTTGTGCTTTATGTTTCCCAATGCAAAC
129 GAGTGACTATAAATGGACTTTTCTTGTCAATGGATGACTT-TGCTTTACGTTTCCCAATGCAAAC
* * * *
20930786 ATCTAATCATGATCTGTTTTAACCAAAAATAAAAAAGATTTCGACTTAAACTCAATTATAA-ATT
193 ATCCAAT-ATGATCTGTTTTAACCAAAAATGAAAAAGATTTCGACTTAAAATCATTTATAAGATT
* * ** *
20930850 ATAAAATCATTTAAAGTGAGTAACGATACTTTCTATTGCATG-GTTGACTACAAATGAAATTTTC
257 ATAAAA-CATTTAAAGTGAGTAACAAGACTTTCTAAGGCATGAG-TGACTATAAATGAAATTTTC
*
20930914 TTG-CTAATGGATAGCATTTG
320 TTGTC-AATGGATGGCATTTG
* * * * * * * * *
20930934 CTTCACGTTTTCTAAAGAAAACATCCAAGTATAATCTGTTTTAACTAAAAATGTAAAGGATTTTG
1 CTTCATGTTTCCTAATGCAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAGATTTTG
* * * * * *
20930999 ATTTAAAATCATTTATAAGTTTATAAAACTACTTAAAGCAAGTAACAAGACCTTCGAAGACATGA
66 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGA
* * * * * * * *
20931064 ATGACTAT-AATAGACTTTTCTTGTCAATGAAAGGCTTTCACTTTCATGTTTCCCGATGCAAACA
131 GTGACTATAAATGGACTTTTCTTGTCAATGGATGACTTT-GCTTT-ACGTTTCCCAATGCAAACA
* * ** * * *
20931128 TCCAAGTATGATATGTTTTAACCTAAAACAAAAAAGATTTCAATTTAAAATCATTTACAAGATTA
194 TCCAA-TATGATCTGTTTTAACCAAAAATGAAAAAGATTTCGACTTAAAATCATTTATAAGATTA
** * * * * * * *
20931193 TAAAACTATTT-AAGTGAGTAATTAGATTTTCGATGGCATGAGTGACTATAAATGGACTTTCCTC
258 TAAAAC-ATTTAAAGTGAGTAACAAGACTTTCTAAGGCATGAGTGACTATAAATGAAATTTTCTT
***
20931257 GTCAATGGATGGCATCCA
322 GTCAATGGATGGCATTTG
* * * * * * *
20931275 CTTCATGTTTTCTTATGCAAACATCAAATTTTGAT-TGATTTAAACCAAAAATG-AAAGGTATTT
1 CTTCATGTTTCCTAATGCAAACATCCAATTATGATCTG-TTTTAACAAAAAATGAAAAAG-ATTT
* * * *
20931338 TGATTTAAAATCATTTATAATG-TTATAAAACC-TTAAAAG-AGAGTAATAAGGCTTTTG-AGAA
64 TGATTTAAAATCATTTATAA-GATTATAAAACCATTTAAAGCA-AGTAACAAGGCTTTCGAAG-G
* * * * * * ***
20931399 CATGAGTGTCAATAAATGGGCTTTTCTTGTCAATGGATGGCTTTCCCTATACGTTTCTTGATGCA
126 CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGACTTT-GCTTTACGTTTCCCAATGCA
** * * * * * *
20931464 AATGTCCAATTGTGATCTGCTTTAACC--AAA-GCAAAATGATTTAGATTTAAAATTATTTATAA
190 AACATCCAA-TATGATCTGTTTTAACCAAAAATG-AAAAAGATTTCGACTTAAAATCATTTATAA
* * ** * * * * *
20931526 -ATTATAAAATCATTTAAAGCGAGTTACATTACCTTCGAAGCCATGAGTGACTATAAATGGACTT
253 GATTATAAAA-CATTTAAAGTGAGTAACAAGACTTTCTAAGGCATGAGTGACTATAAATGAAATT
* * * ***
20931590 TTCTTATTAATGGAAGGCATCCA
317 TTCTTGTCAATGGATGGCATTTG
* * * * * * *
20931613 TTTCATGTTTCCTTATGCAAACATCCTAA-TATGATCTATTTTAAGTACAACA--AAAAACATTT
1 CTTCATGTTTCCTAATGCAAACATCC-AATTATGATCTGTTTTAA-CAAAAAATGAAAAAGATTT
* * * ** * * * *
20931675 CGATTTAAAATCATTTATAAGATTATAAGATCA-TTAAAGTGAGTAACTAGGCTTTTGATGGAAT
64 TGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTCGAAGGCAT
20931739 GAGTGACTGA-AAATGGA-TTGTTCTTGT
129 GAGTGACT-ATAAATGGACTT-TTCTTGT
20931766 TAGTTGCTTG
Statistics
Matches: 2278, Mismatches: 489, Indels: 221
0.76 0.16 0.07
Matches are distributed among these distances:
334 4 0.00
335 167 0.07
336 100 0.04
337 84 0.04
338 124 0.05
339 16 0.01
340 228 0.10
341 750 0.33
342 515 0.23
343 287 0.13
344 3 0.00
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.34
Consensus pattern (339 bp):
CTTCATGTTTCCTAATGCAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAGATTTTG
ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGA
GTGACTATAAATGGACTTTTCTTGTCAATGGATGACTTTGCTTTACGTTTCCCAATGCAAACATC
CAATATGATCTGTTTTAACCAAAAATGAAAAAGATTTCGACTTAAAATCATTTATAAGATTATAA
AACATTTAAAGTGAGTAACAAGACTTTCTAAGGCATGAGTGACTATAAATGAAATTTTCTTGTCA
ATGGATGGCATTTG
Found at i:20932133 original size:182 final size:181
Alignment explanation
Indices: 20931778--20932425 Score: 622
Period size: 182 Copynumber: 3.6 Consensus size: 181
20931768 GTTGCTTGTG
* * * ** ** * * *
20931778 TCCATTGACAAGAAAAGACTATTTTAAGTTCATCGGGCCATCGAAAGCATTGTTACTCACTTTGA
1 TCCATTGATAAGAAAAGACCATTTTAAGTTAATCATGTGATCAAAAGCTTTGTTACTCACTTTAA
* * * * * *
20931843 AAGATATATTAATTCATTCATAACCTTACAAATGATTATAAAATGAAATATTTGGACTTTTTGGT
66 AAGATATATTAATTCATTTATAATCTTATAAATGATTAT-AAATAAAATCTTTGGACTTTATGGT
* * * * * **
20931908 TAGAACCTATCATAATTTGATGTTTGGATTGGGAAATGTGAAGTAAATGCTA
130 TAAAACCTATTATAATTGGATGTTTGCATTGGAAAATGTGAAGTGGATGCTA
* * * *
20931960 TCCCTTGATAGGAAAAGACCATTTTAAGTCAATCATGTGATCAAAAGCTTTGTTGCTCACTTTAA
1 TCCATTGATAAGAAAAGACCATTTTAAGTTAATCATGTGATCAAAAGCTTTGTTACTCACTTTAA
* *
20932025 AAGATATATTAACTCATTTATAATCTTATAAATGATTATAAATCAAAATCTTTGAACTTTATGGT
66 AAGATATATTAATTCATTTATAATCTTATAAATGATTATAAAT-AAAATCTTTGGACTTTATGGT
* * *
20932090 TAAAAGCTATTATAATTGGATATTTGCATTGGAAAACGTGAAGTGGATGCTA
130 TAAAACCTATTATAATTGGATGTTTGCATTGGAAAATGTGAAGTGGATGCTA
* * * *
20932142 TTCATTG-TGAAGAAAAGACCATTTTAAGTTAAT--TGTGCCATTAATAGCTGTGTTACTCACTT
1 TCCATTGAT-AAGAAAAGACCATTTTAAGTTAATCATGTG--ATCAAAAGCTTTGTTACTCACTT
* * * * * * * * *
20932204 TAAATGATGTATTCATCCATTTGTAATTTTATAAATTATTATCAATAAAAACCTTTGGACTTTAT
63 TAAAAGATATATTAATTCATTTATAATCTTATAAATGATTATAAAT-AAAATCTTTGGACTTTAT
* * * *
20932269 GATCAAAACCTATTATAATTGGATGTTTTCATT-CACAAATGTGAAGTGGATGCTA
127 GGTTAAAACCTATTATAATTGGATGTTTGCATTGGA-AAATGTGAAGTGGATGCTA
* * * * ** * * * * * *
20932324 TCAATTGACAAGAAAAGATCATTTTAAGTTATTCATGCCATCGAAAGCGTTGATGCAT-GCTTCA
1 TCCATTGATAAGAAAAGACCATTTTAAGTTAATCATGTGATCAAAAGCTTTGTTAC-TCACTTTA
* *
20932388 AATGATATATTAATTCATATATAATCTTATAAATGATT
65 AAAGATATATTAATTCATTTATAATCTTATAAATGATT
20932426 TTTAATTTAG
Statistics
Matches: 375, Mismatches: 82, Indels: 18
0.79 0.17 0.04
Matches are distributed among these distances:
180 4 0.01
181 6 0.02
182 362 0.97
183 1 0.00
184 2 0.01
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.37
Consensus pattern (181 bp):
TCCATTGATAAGAAAAGACCATTTTAAGTTAATCATGTGATCAAAAGCTTTGTTACTCACTTTAA
AAGATATATTAATTCATTTATAATCTTATAAATGATTATAAATAAAATCTTTGGACTTTATGGTT
AAAACCTATTATAATTGGATGTTTGCATTGGAAAATGTGAAGTGGATGCTA
Found at i:20933274 original size:21 final size:22
Alignment explanation
Indices: 20933249--20933289 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
20933239 CCTAGGTGGA
20933249 AAAATTCAAGGAAA-AAGTGTG
1 AAAATTCAAGGAAACAAGTGTG
20933270 AAAATTCAAGGAAACAAGTG
1 AAAATTCAAGGAAACAAGTG
20933290 AAAAAAGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.54, C:0.07, G:0.22, T:0.17
Consensus pattern (22 bp):
AAAATTCAAGGAAACAAGTGTG
Found at i:20933295 original size:22 final size:21
Alignment explanation
Indices: 20933248--20933295 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 21
20933238 CCCTAGGTGG
*
20933248 AAAAATTCAAGGAAAAAGTGT
1 AAAAATTCAAGGAAAAAGTGA
*
20933269 GAAAATTCAAGGAAACAAGTGA
1 AAAAATTCAAGGAAA-AAGTGA
20933291 AAAAA
1 AAAAA
20933296 GATAAGATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 14 0.61
22 9 0.39
ACGTcount: A:0.60, C:0.06, G:0.19, T:0.15
Consensus pattern (21 bp):
AAAAATTCAAGGAAAAAGTGA
Found at i:20934098 original size:27 final size:29
Alignment explanation
Indices: 20934062--20934115 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
20934052 TCGGAGTATA
*
20934062 GGGGCAAAATC-GTAATTTTTTCACCCTT
1 GGGGCAAAATCGGTAAATTTTTCACCCTT
20934090 GGGGC-AAATCGGTAAATTTTTCACCC
1 GGGGCAAAATCGGTAAATTTTTCACCC
20934116 CAGCACTTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 5 0.21
28 19 0.79
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.31
Consensus pattern (29 bp):
GGGGCAAAATCGGTAAATTTTTCACCCTT
Found at i:20935325 original size:2 final size:2
Alignment explanation
Indices: 20935318--20935345 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
20935308 TTGTATTATG
20935318 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
20935346 GTGTGTGTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:20938492 original size:182 final size:181
Alignment explanation
Indices: 20938162--20945675 Score: 6535
Period size: 182 Copynumber: 41.3 Consensus size: 181
20938152 CTTTGTGAAC
* *
20938162 GATATATAAATTCATTTGTAATCTTATAAATGATTATAAATTGAAATCTTTGGACTTTATGGTTA
1 GATATATTAATTCATTTATAATCTTATAAATGATTATAAATTGAAATCTTTGGACTTTATGGTTA
* ** * * * * *
20938227 AAACCTATCATAATAGGATGTTTGCATTGAAAAATGTGAAATGGATGCTATCCCTTGGCAACAAA
66 AAACCTATCATAATTGGATGTTTGCATTGGGAAACGTGAAGTGGATGCTATCCATTGACAAGAAA
* * * * *
20938292 AGGCCATTTTATGCTAATCATGCCATCAATAGCTATGTTACTCACTTTCAAT
131 AGACCATTTTAAGTTAATCATGCCATCAA-AGCTTTGTTACTCACTTTAAAT
* * *
20938344 GATGTATTAATTCATTTATAATCTTATAAATGATTATTAATTGAAATATTTGGACTTTATGGTTA
1 GATATATTAATTCATTTATAATCTTATAAATGATTATAAATTGAAATCTTTGGACTTTATGGTTA
* * * * * * * *
20938409 AAACATATCATAATTGGATGTTTGAATTAGAAAACATAAAGTGGATGGTATCCATTAACAAGAAA
66 AAACCTATCATAATTGGATGTTTGCATTGGGAAACGTGAAGTGGATGCTATCCATTGACAAGAAA
** * * * * * * *
20938474 AGAATATTTTAAGCTAATCATGCCATCGAAGCTTTGTCACTTATTTTGAAC
131 AGACCATTTTAAGTTAATCATGCCATCAAAGCTTTGTTACTCACTTTAAAT
* * * *
20938525 GATTATATTAGTTCATTTTTAATATTATAAATTATTATAAATTGAAATCTTTGGACTTTATGGTT
1 GA-TATATTAATTCATTTATAATCTTATAAATGATTATAAATTGAAATCTTTGGACTTTATGGTT
*
20938590 AAAACCTATCATAATTGGATGTTTGCATTGGGAAACGTGAAGTGGATGCTATCCCTTGA-AA-AA
65 AAAACCTATCATAATTGGATGTTTGCATTGGGAAACGTGAAGTGGATGCTATCCATTGACAAGAA
** * * *
20938653 AATGACCATTTTAAGTTAATCATGTGATTGAAAGCTTTATTACTCGCTTTAAAT
130 AA-GACCATTTTAAGTTAATCATGCCA-TCAAAGCTTTGTTACTCACTTTAAAT
* * * ** * *
20938707 GATATATTAATTAATTTATAATCTTACAAATGAATATAAATCAAAATCTTTGGACTTGATGGTTC
1 GATATATTAATTCATTTATAATCTTATAAATGATTATAAATTGAAATCTTTGGACTTTATGGTTA
* * * * * * * * **
20938772 AAACCAAAT-GTAATTGGATGTTTGTATTGAGCAACGTGATGTGGATGCT-GCTAATTGTGAAGA
66 AAACC-TATCATAATTGGATGTTTGCATTGGGAAACGTGAAGTGGATGCTATC-CATTGACAAGA
* * *
20938835 AAAGACCAATTTAAGTTAACCATGCCATCAATAGCTTTGTTACTCCCTTTAAAT
129 AAAGACCATTTTAAGTTAATCATGCCATCAA-AGCTTTGTTACTCACTTTAAAT
* * * * * ** * * *
20938889 AATGTAATAATTCATTTATAATCTTATAAATGATTTTATATCCAAATCATTGAACTTTATGGTTT
1 GATATATTAATTCATTTATAATCTTATAAATGATTATAAATTGAAATCTTTGGACTTTATGGTTA
* ** * * ** * * * * **
20938954 AAAGCTATTGTAATTGGATATTTGTATAAGGAAACATGAAGTGGATGTTGTTCATTGTGAAGAAA
66 AAACCTATCATAATTGGATGTTTGCATTGGGAAACGTGAAGTGGATGCTATCCATTGACAAGAAA
* * * * * *
20939019 AGGCCATTTTAAGTTAATCATGCCATCGAAAGCATTGATGCAT-GCTTCAAAT
131 AGACCATTTTAAGTTAATCATGCCATC-AAAGCTTTGTTAC-TCACTTTAAAT
* * * * * *
20939071 GATAAATTAATTCATATATAATCTTATAAATGATTTTTAATT-AAGATATTTGG-GTGTTATGGT
1 GATATATTAATTCATTTATAATCTTATAAATGATTATAAATTGAA-ATCTTTGGACT-TTATGGT
* *
20939134 TAAAACCTATCATAATTGGATGTTTGAATTGGGAAACGTGAAGTGGATGTTATCCATTGACAAGA
64 TAAAACCTATCATAATTGGATGTTTGCATTGGGAAACGTGAAGTGGATGCTATCCATTGACAAGA
* * * * *
20939199 AAAGACTATTTTAAATTAATCATGCCATCGAAAACTTTGTTACTCACTTTGAAC
129 AAAGACCATTTTAAGTTAATCATGCCATC-AAAGCTTTGTTACTCACTTTAAAT
* * * * *
20939253 GA-ATATAAATTTATTTGTAATCTTATAAATGATTATAAATTAAAATCTGTT-GTCTTTATGGTT
1 GATATATTAATTCATTTATAATCTTATAAATGATTATAAATTGAAATCT-TTGGACTTTATGGTT
* *
20939316 AAAACCTATCATAATTGGATGTTTGCATTGGGAAATGTGAAGTGGATGCTATCCTTTGACAAGAA
65 AAAACCTATCATAATTGGATGTTTGCATTGGGAAACGTGAAGTGGATGCTATCCATTGACAAGAA
*
20939381 AAGACCATTTTAAGCTAATCATGCCATCAATAGCTTTGTTACTCACTTTAAAT
130 AAGACCATTTTAAGTTAATCATGCCATCAA-AGCTTTGTTACTCACTTTAAAT
* * * * * * * * * * *
20939434 GATGTATTAATTCATTTATGATCTCATTAACGATTATTAATTGAGATATTTGGAATTCATGGATA
1 GATATATTAATTCATTTATAATCTTATAAATGATTATAAATTGAAATCTTTGGACTTTATGGTTA
* * * * * * * * *
20939499 AAACATATCATAATTGGATGTTTGAATTAGAAAATGTGAAGTGGATGGTATCCGTTAAAAAGAAA
66 AAACCTATCATAATTGGATGTTTGCATTGGGAAACGTGAAGTGGATGCTATCCATTGACAAGAAA
** * * * * ** *
20939564 AGAATATTTTAAGTTAATCGTGCCATCAAAACCTTTGTCACTCGCTTCGAAC
131 AGACCATTTTAAGTTAATCATGCCATC-AAAGCTTTGTTACTCACTTTAAAT
* * * * *
20939616 GATATATTAGTTCATTTTTAATATTATAAATGATTATAAATTAAAATCTTTGTACTTTATGGTTA
1 GATATATTAATTCATTTATAATCTTATAAATGATTATAAATTGAAATCTTTGGACTTTATGGTTA
* * * * * *
20939681 AAACCTATCATAATTGGATGTTTGGATTGGGAAACATGAAATTGATGCGATCCCTTGACAAGAAA
66 AAACCTATCATAATTGGATGTTTGCATTGGGAAACGTGAAGTGGATGCTATCCATTGACAAGAAA
* * * *
20939746 TGACCATTTTAAGTTAATCATGCAATCCAAATCTTTGTTACTCACCTTAAAT
131 AGACCATTTTAAGTTAATCATGCCAT-CAAAGCTTTGTTACTCACTTTAAAT
* *
20939798 GATATATTAATTCATTTATAATCTT-TCAAATGACTATAAATAGAAATCTTTGGACTTTATGGTT
1 GATATATTAATTCATTTATAATCTTAT-AAATGATTATAAATTGAAATCTTTGGACTTTATGGTT
* ** ** * * * *
20939862 CAAACCTATTGTAATTGGATGTTTGCATCAGGAAACGTGAAGTGAATGCTATTCGTT-ATGAAGA
65 AAAACCTATCATAATTGGATGTTTGCATTGGGAAACGTGAAGTGGATGCTATCCATTGA-CAAGA
* * *
20939926 AAAGACCATTTTAAGTTAATCATGCTATCAATAGTTTTGTTACTCATTTTAAAT
129 AAAGACCATTTTAAGTTAATCATGCCATCAA-AGCTTTGTTACTCACTTTAAAT
* * * * *
20939980 AATGTAATAATTCATTTATAATCTTCTAAATGATTATAAA-TCAATATCTTTGGACTTTATGGTT
1 GATATATTAATTCATTTATAATCTTATAAATGATTATAAATTGAA-ATCTTTGGACTTTATGGTT
* ** * ** * * * * ** **
20940044 TAAACCTATTGTATTTGGATGTTTGCATAAGGAAACATGAAGTAGATGTTGTTTATTGTGAAGAA
65 AAAACCTATCATAATTGGATGTTTGCATTGGGAAACGTGAAGTGGATGCTATCCATTGACAAGAA
* *
20940109 AAGACCATTTTAAGTTAATCATGCCAGCAATAACTTTGTTACTCACTTTAAAT
130 AAGACCATTTTAAGTTAATCATGCCATCAA-AGCTTTGTTACTCACTTTAAAT
* * * * * ** * * *
20940162 GGTGTATTAATTCATTTATGATCTTATATATAATTATAAATCAAAATCTTTGGTCTTTATGATCA
1 GATATATTAATTCATTTATAATCTTATAAATGATTATAAATTGAAATCTTTGGACTTTATGGTTA
* * * * * * * * * *
20940227 AAACTTATTATAATTGGATGTTTGCGTTCGTAAATGTGAAGTGAAAGCTATCAATTGAGAAGAAA
66 AAACCTATCATAATTGGATGTTTGCATTGGGAAACGTGAAGTGGATGCTATCCATTGACAAGAAA
* * * * * *
20940292 ACACCATTTTAAGTTAATCCTGGCATCAAAAGCTTTGATACAT-GCTTCAAAT
131 AGACCATTTTAAGTTAATCATGCCATC-AAAGCTTTGTTAC-TCACTTTAAAT
* * * *
20940344 GATATATTAATTC-------A---TAT--ATGGTTATTAATTGATATATTTGGACTTTATGGTTA
1 GATATATTAATTCATTTATAATCTTATAAATGATTATAAATTGAAATCTTTGGACTTTATGGTTA
* * * *
20940397 AATCCTATCATAATTGGATGTTTGAATTGGGAAACATGAAGTGGATGGTATCCATTGACAAGAAA
66 AAACCTATCATAATTGGATGTTTGCATTGGGAAACGTGAAGTGGATGCTATCCATTGACAAGAAA
* ** ** * * * * *
20940462 AAATTA-TTTAAGACAATCGTGCCATCGAAAACTTTGTTAGTCACTTTGAAC
131 AGACCATTTTAAGTTAATCATGCCATC-AAAGCTTTGTTACTCACTTTAAAT
* * *
20940513 AATATATAAATTCATTTGTAATCTTATAAATGATTATAAATTGAAATCTTTGGACTTTATGGTT-
1 GATATATTAATTCATTTATAATCTTATAAATGATTATAAATTGAAATCTTTGGACTTTATGGTTA
* *** * * * *
20940577 AAACCTAACATAATTGGATGTTAATATTGGAAAACGTAAAATGGATGCTATCCCTTGACAAGAAA
66 AAACCTATCATAATTGGATGTTTGCATTGGGAAACGTGAAGTGGATGCTATCCATTGACAAGAAA
* *
20940642 AGACCATTTTAAGTTAATCATG-CATTTGAAAGCCTTGTTACTCACTTTAAAT
131 AGACCATTTTAAGTTAATCATGCCA--TCAAAGCTTTGTTACTCACTTTAAAT
* *
20940694 GATATATTAATTCATTTATAATCTTATAAATAATTATAAA-TCAATATCTTTGGACTTTATGGTT
1 GATATATTAATTCATTTATAATCTTATAAATGATTATAAATTGAA-ATCTTTGGACTTTATGGTT
* * * **** ** *
20940758 CAAACCTATTATAATTGGATGCTTGCATCAAAAAATTTGAAGTGGATGCTATTCATTGTGAC-A-
65 AAAACCTATCATAATTGGATGTTTGCATTGGGAAACGTGAAGTGGATGCTATCCA-T-TGACAAG
* ** * * * *
20940821 AAAAGACCATTTTAATTTAATCGCGCCATCTATAGCTGTCTTACTCATTTTAAAT
128 AAAAGACCATTTTAAGTTAATCATGCCATC-AAAGCTTTGTTACTCACTTTAAAT
* * * * ** * ***
20940876 GATGA-ATTCAGTCATTTATAATCATATAAATGATTACAAATCAAAATCTTTGTACTTTATGACC
1 GAT-ATATTAATTCATTTATAATCTTATAAATGATTATAAATTGAAATCTTTGGACTTTATGGTT
** * * * *
20940940 AAAACCTATTGTAATTGGATGTTTGCATTTGCAAACATGAAGTGGATGCTATCAATTGACAAGAA
65 AAAACCTATCATAATTGGATGTTTGCATTGGGAAACGTGAAGTGGATGCTATCCATTGACAAGAA
* * * * * *
20941005 ATGACCATTTTAAGATAATCATGCCATCGAAAGCATTGATACAT-GCTTCAAAT
130 AAGACCATTTTAAGTTAATCATGCCATC-AAAGCTTTGTTAC-TCACTTTAAAT
* * ** * *
20941058 GATATATTAATTCATTTATAATGTTATAAATGAGTATTTATT-AAAT-ATTGAGACTTTATGGTC
1 GATATATTAATTCATTTATAATCTTATAAATGATTATAAATTGAAATCTTTG-GACTTTATGGTT
* * * * * * *
20941121 AAACCCTATCATAACTGGACGTTTGAATTGGGAAATGTGAAGTGGATGGTATCCATTAACAAGAA
65 AAAACCTATCATAATTGGATGTTTGCATTGGGAAACGTGAAGTGGATGCTATCCATTGACAAGAA
* ** ** * * *
20941186 AAGACTATTTTAAGTTAATTGTGCTGTTGAAAACTTTGTTACTCACTTTGAAT
130 AAGACCATTTTAAGTTAATCATGC-CATCAAAGCTTTGTTACTCACTTTAAAT
* * * * *
20941239 GATATATAAATTCATTTGTAATTTTATAAATCATTATAAATTGAAATCCTTGGACTTTATGGTTA
1 GATATATTAATTCATTTATAATCTTATAAATGATTATAAATTGAAATCTTTGGACTTTATGGTTA
* * *
20941304 AAACCTATCATAATTGGATGTTTGCATTGGGAAATGTGAAGTGGATGCTATCCCTTGACACGAAA
66 AAACCTATCATAATTGGATGTTTGCATTGGGAAACGTGAAGTGGATGCTATCCATTGACAAGAAA
*
20941369 AGACCATTTTAAGCTAATCATGCCATCAATAGCTTTGTTACTCACTTTAAAT
131 AGACCATTTTAAGTTAATCATGCCATCAA-AGCTTTGTTACTCACTTTAAAT
* * * * * * * * *
20941421 GATGTATTAATTCATTTATAATCTTATAAATTACTATTAATTGATATATTTGGACTTCATGGATG
1 GATATATTAATTCATTTATAATCTTATAAATGATTATAAATTGAAATCTTTGGACTTTATGGTTA
* * * * * * * * *
20941486 ACACATATTACAATTGGATGTTTGAATTGGAAAACATGAAGTGGATGGTATCCATTGAAAAGAAA
66 AAACCTATCATAATTGGATGTTTGCATTGGGAAACGTGAAGTGGATGCTATCCATTGACAAGAAA
** * * * *
20941551 AGAATATTTTAAGTTAATCGTGCCATCGAAAGCTTTGTCACTCACATTGAAT
131 AGACCATTTTAAGTTAATCATGCCATC-AAAGCTTTGTTACTCACTTTAAAT
* *
20941603 GATATATTAGTTCATTT-TCAATATTATAAATGATTATAAATTGAAATCTTTGGACTTTATGGTT
1 GATATATTAATTCATTTAT-AATCTTATAAATGATTATAAATTGAAATCTTTGGACTTTATGGTT
* * * * * * *
20941667 AAAACCTAACATAATTGGATGTTTGCATTAGAAAATGTGAAGTAGATGCTATCCCTTGAGAAGAA
65 AAAACCTATCATAATTGGATGTTTGCATTGGGAAACGTGAAGTGGATGCTATCCATTGACAAGAA
** * * *
20941732 AAGACCATTTTAAGTTAATCATGTGATTGAAAGCTTTGTTACTTACTTTCAAT
130 AAGACCATTTTAAGTTAATCATGCCA-TCAAAGCTTTGTTACTCACTTTAAAT
* * * ** * *
20941785 GATATATTAATTCATTTACAATTTTATAAATGATTACAAATCAAAATCTTTGGCCTTTATGGTTC
1 GATATATTAATTCATTTATAATCTTATAAATGATTATAAATTGAAATCTTTGGACTTTATGGTTA
* ** *** * ** * **
20941850 AAACATATTGTAATTGGATGTTTGCATCAAGCAATATGATGTGGATG-TGA-CTCATTGTGAAGA
66 AAACCTATCATAATTGGATGTTTGCATTGGGAAACGTGAAGTGGATGCT-ATC-CATTGACAAGA
20941913 AAAGACCATTTTAAGTTAATCATGCCATCAATAGCTTTGTTACTCTA-TTTAAAT
129 AAAGACCATTTTAAGTTAATCATGCCATCAA-AGCTTTGTTACTC-ACTTTAAAT
* * * ** * ** * * *
20941967 AATGTAATAATTCATTTATAATCTTATGTACGATTATAAATCAAAATCATTGGACTTTATGATTT
1 GATATATTAATTCATTTATAATCTTATAAATGATTATAAATTGAAATCTTTGGACTTTATGGTTA
** * * * * * * **
20942032 AAACCT-TTGTAATTGGATATTTGCATCGAGAAACGTGAAATGGATGCCATCAATTGGGAAGAAA
66 AAACCTATCATAATTGGATGTTTGCATTGGGAAACGTGAAGTGGATGCTATCCATTGACAAGAAA
* * * ** *
20942096 TGATCATTTTAACTTAATCATGCTGTCAAAAGCTTTGATT-CAT-GCTTTAAAT
131 AGACCATTTTAAGTTAATCATGCCATC-AAAGCTTTG-TTAC-TCACTTTAAAT
* ** * ** * * *
20942148 GATACATTAATAAATTTATAATTTTATAAATGATTATTAAA-TGGGA-CAGTTGGAGTTTATCGT
1 GATATATTAATTCATTTATAATCTTATAAATGATTA-TAAATTGAAATC-TTTGGACTTTATGGT
* * * * * * * * *
20942211 TAAAACCTA-CCTAATTGGTTATTT-CAACTGGGAAATGTGAAATGGATGGTATCTATTGAGAAG
64 TAAAACCTATCATAATTGGATGTTTGC-ATTGGGAAACGTGAAGTGGATGCTATCCATTGACAAG
* *** *
20942274 AAAAGACTATTTTAAGTTAATTGGGCCATCAAAAGCTTAGTTACTCACTTTAACA-
128 AAAAGACCATTTTAAGTTAATCATGCCATC-AAAGCTTTGTTACTCACTTTAA-AT
* * * *
20942329 GATATATTCATTCATTT-TCAATTTTATAAATGATTATAAAATGAAATATTTGGACTTTATGGTT
1 GATATATTAATTCATTTAT-AATCTTATAAATGATTATAAATTGAAATCTTTGGACTTTATGGTT
* * **
20942393 AGAACCTATCATAATTGGATGTTT-CGATTGGGAAACGTAAAGTGGATGCTATCTGTTGACAAGA
65 AAAACCTATCATAATTGGATGTTTGC-ATTGGGAAACGTGAAGTGGATGCTATCCATTGACAAGA
* * *
20942457 AATGACCATTTTAAGTTAATCATGCAATCAAAAGCTTTGTTACTCACCTTAAAT
129 AAAGACCATTTTAAGTTAATCATGCCATC-AAAGCTTTGTTACTCACTTTAAAT
* * ** * *
20942511 GATATATTAATTCATTTATAATCTTATAAATGAGTATGAATAAAAATCTTTGGACTTTATGGCTC
1 GATATATTAATTCATTTATAATCTTATAAATGATTATAAATTGAAATCTTTGGACTTTATGGTTA
** * * * * * *
20942576 AAACCTATTGTAATTGGATGTTTGCATTAGGAAACGTGAAATGTATGCTATTCATTGCAAAAAAA
66 AAACCTATCATAATTGGATGTTTGCATTGGGAAACGTGAAGTGGATGCTATCCATTG--ACAAGA
20942641 AAAGGACCATTTTAAGTTAATCATGCCATCAATAGCTTTGTTACTCACTTTAAAT
129 AAA-GACCATTTTAAGTTAATCATGCCATCAA-AGCTTTGTTACTCACTTTAAAT
* * * ** * * ** * *
20942696 AATGTAATAATTCATTCGTAATCTTGTAAATGACTATAAATCAAAATCTTTGGACTTTATGCTTC
1 GATATATTAATTCATTTATAATCTTATAAATGATTATAAATTGAAATCTTTGGACTTTATGGTTA
** * * * * * **
20942761 AAACCTATTGTAATTGGATGTTTTCATCGAGAAAAGTGAAGTGGATGCTATTCATTGTGAAGAAA
66 AAACCTATCATAATTGGATGTTTGCATTGGGAAACGTGAAGTGGATGCTATCCATTGACAAGAAA
* * *
20942826 AGACCATTTTAAGTTAATCTTGCCATCAATGGCTTTGTTACTCACTTCAAAT
131 AGACCATTTTAAGTTAATCATGCCATCAA-AGCTTTGTTACTCACTTTAAAT
* * * * * ** *
20942878 AATGTAATATTTCATTTATAATCTTACAAATGATTATAAATCAAAATCTTTGGACTTTATGGTTC
1 GATATATTAATTCATTTATAATCTTATAAATGATTATAAATTGAAATCTTTGGACTTTATGGTTA
** * ** * * **
20942943 AAACCTATTGTAATTGGATGTTTGCCTCAGGAAAAGTGAAGTGGATGCTATTCATTGTGAAGAAA
66 AAACCTATCATAATTGGATGTTTGCATTGGGAAACGTGAAGTGGATGCTATCCATTGACAAGAAA
*
20943008 AGACCATTTTAAGTTAATCATGCCATCAATAGTTTTGTTACTCACTTTAAAT
131 AGACCATTTTAAGTTAATCATGCCATCAA-AGCTTTGTTACTCACTTTAAAT
* * * *
20943060 -AGTGTAATAATTCATTTATAATCTTATAAATAATTATAAA-TCAATATCTTTGGACTTTATGGT
1 GA-TATATTAATTCATTTATAATCTTATAAATGATTATAAATTGAA-ATCTTTGGACTTTATGGT
* * * * *
20943123 TCAAACCTATTGCAT--TTGCATGTTTGAAATGGGAAACATGAAGTGGATG-T-TGCTCATTG-C
64 TAAAACCTA-T-CATAATTGGATGTTTGCATTGGGAAACGTGAAGTGGATGCTAT-C-CATTGAC
* *
20943183 AAAGAAAAGACCATTTTAAATTAATCATGCCATCAATAGCTTTGTTACTCACTTTAAAC
125 -AAGAAAAGACCATTTTAAGTTAATCATGCCATCAA-AGCTTTGTTACTCACTTTAAAT
* * ** * * *
20943242 GATGTATTAATTCATTTATAATCTTATAAATTATTATAAATCAAAATTTTTTGACTTTATGGTTG
1 GATATATTAATTCATTTATAATCTTATAAATGATTATAAATTGAAATCTTTGGACTTTATGGTTA
* ** * * * **
20943307 AAATCTATTGTAATTGGATGTTTGCATCGAGAAACGTGAAGTGGATGCTATACATTGTGAAGAAA
66 AAACCTATCATAATTGGATGTTTGCATTGGGAAACGTGAAGTGGATGCTATCCATTGACAAGAAA
* * * *
20943372 AGACCATTTTAAGTTAATCATGTCATCAGCAGCTTTGTTACTCTCTTTAAGT
131 AGACCATTTTAAGTTAATCATGCCATCA-AAGCTTTGTTACTCACTTTAAAT
* * * * * * * * * *
20943424 AATGTAATAAATCATTTATAATCTTAAAAATGATTATTAATTCAGATATTAGGACTTTATGGTTA
1 GATATATTAATTCATTTATAATCTTATAAATGATTATAAATTGAAATCTTTGGACTTTATGGTTA
* * * * *
20943489 AAACCTGTCATAATTGGATGTTTGAATTGGCAAACGTGAAGTCGATGGTATCCTATT-ACAAGAA
66 AAACCTATCATAATTGGATGTTTGCATTGGGAAACGTGAAGTGGATGCTATCC-ATTGACAAGAA
* * * *
20943553 AAGACTATTTTAAGTTAATCATGCCATCAAAAACTTTGTTACTCTCTCTAAACT
130 AAGACCATTTTAAGTTAATCATGCCATC-AAAGCTTTGTTACTCACTTTAAA-T
* * *
20943607 -ATATATAAATTCATTTGTAACCTTATAAATGATTATAAATTGAAATCTTTGGAC----TGGTTA
1 GATATATTAATTCATTTATAATCTTATAAATGATTATAAATTGAAATCTTTGGACTTTATGGTTA
* * * * *
20943667 AAACCTATCATAATTGGGTGTTTGTATTGGGAAATGTGAAGTGGATGTTATCCCTTGACAAGAAA
66 AAACCTATCATAATTGGATGTTTGCATTGGGAAACGTGAAGTGGATGCTATCCATTGACAAGAAA
* * *
20943732 AGACCATTTTAAGCTAATCATGCCATCAATAG-TATTGATACTCACTTTAAAC
131 AGACCATTTTAAGTTAATCATGCCATCAA-AGCT-TTGTTACTCACTTTAAAT
* * * * * * *
20943784 AATGTATTAATTCATTTATAACCTTAAAAATGATTATTAATTGACATATTTGGACTTTATGGTTA
1 GATATATTAATTCATTTATAATCTTATAAATGATTATAAATTGAAATCTTTGGACTTTATGGTTA
* * * * * ***
20943849 AAACCTTTCATAGTTGGATGGTTGAATT-AGACAACACAAAGTGGATGGC-ATCCATTGACAAGA
66 AAACCTATCATAATTGGATGTTTGCATTGGGA-AACGTGAAGTGGAT-GCTATCCATTGACAAGA
** * * * *
20943912 AAAGAATATTTTAAGTTAATCGTGCCATCGAAAGCTTTGTCACTCACTTTGAAC
129 AAAGACCATTTTAAGTTAATCATGCCATC-AAAGCTTTGTTACTCACTTTAAAT
* * * * *
20943966 AATATATTAATGCATTTATAATATTATAAATGATTATAAGTTGAAATCTTTGAACTTTATGGTTA
1 GATATATTAATTCATTTATAATCTTATAAATGATTATAAATTGAAATCTTTGGACTTTATGGTTA
* * * * * * * *
20944031 AAACCTAACATAATTGGATGTTTGCATTGGGAAATGTGAAGTAGATGTTGTCCCTTGAAAATAAA
66 AAACCTATCATAATTGGATGTTTGCATTGGGAAACGTGAAGTGGATGCTATCCATTGACAAGAAA
* * * ** * * * *
20944096 AAAACATTTCT-AGTTGATCATGTGATCGAAAGTTTTATTACTAACTTCAAAT
131 AGACCATTT-TAAGTTAATCATGCCATC-AAAGCTTTGTTACTCACTTTAAAT
* * * * ** *
20944148 GATATATTAATTCATTTATATCACCTTCAACGATATATTAATTTATAAA-TGATTATGAATTGAA
1 GATATATTAATTCATTTATA--ATCTT-----ATA-AATGA-TTATAAATTGA-AAT-CTTTGGA
* * * * * * * ** * * *
20944212 ATATT-TGGACTT-TATCGTTTCA-ACCTAT-CATAATTGGATAGGATGGGAAAAGATGAAGAGG
55 CT-TTATGG--TTAAAACCTATCATA-AT-TGGATGTTTGCAT----TGGGAAACG-TGAAGTGG
* * * * * * * *
20944273 ATGCTATCCCTTGACAGGAAAAGACTA-ATTAATTTAATCGTGCGATCGAAAGCTTTGTTACTCG
110 ATGCTATCCATTGACAAGAAAAGACCATTTTAAGTTAATCATGCCATC-AAAGCTTTGTTACTCA
20944337 CTTTAAAT
174 CTTTAAAT
* * * ** * * *
20944345 GATATATTAATCCATTTAAAATCTGATAAATGATTATAAATCAAAAGCGTTGCACTTTATGGTTA
1 GATATATTAATTCATTTATAATCTTATAAATGATTATAAATTGAAATCTTTGGACTTTATGGTTA
** * * * *
20944410 AAACCTATTGTAATTGGAAGTTTGCATTGGGAAACGTGAAGTGGATGATATTCGTTG-CGAAGAA
66 AAACCTATCATAATTGGATGTTTGCATTGGGAAACGTGAAGTGGATGCTATCCATTGAC-AAGAA
* * * *
20944474 AAAACTATTTTAAGCTAATCATGCCATCAATAGCTTTGTTACTC-GTTTAAAT
130 AAGACCATTTTAAGTTAATCATGCCATCAA-AGCTTTGTTACTCACTTTAAAT
* * *** * *
20944526 GATGTATTAATTCATTTATAATCTTATAAATGGTTATAAACCAAAATCTTTGCACTTTATAGTT-
1 GATATATTAATTCATTTATAATCTTATAAATGATTATAAATTGAAATCTTTGGACTTTATGGTTA
* ** * * * *
20944590 TAACCTATTGTAATTGGATGTTTGCATTTGAAAACGTGAAGTGGATGCTGTTCATT-ACCAAGAA
66 AAACCTATCATAATTGGATGTTTGCATTGGGAAACGTGAAGTGGATGCTATCCATTGA-CAAGAA
* * ** *
20944654 AAGACCA-TTTAAGTTAATCATGTCCTTGAAAGCTTTCATACACACTTTAAAT
130 AAGACCATTTTAAGTTAATCATG-CCATCAAAGCTTTGTTACTCACTTTAAAT
* * * * *
20944706 GATATATTAATTCATTTATAATCATATAAATGATTATTAAA-AGACATATTTGCACTTTATGGTT
1 GATATATTAATTCATTTATAATCTTATAAATGATTA-TAAATTGAAATCTTTGGACTTTATGGTT
* * * * * * ** * *
20944770 AAAACCTATCATAATTGGTTGCTTGAATTGGAAAAAGTGAAGTGGATGGTATTTATTAACATGAA
65 AAAACCTATCATAATTGGATGTTTGCATTGGGAAACGTGAAGTGGATGCTATCCATTGACAAGAA
* * * * *
20944835 CAGACTATTTTAAGTTAATCATGCCATTGAAAGCTTTGATACAT-GCTTTAAAT
130 AAGACCATTTTAAGTTAATCATGCCA-TCAAAGCTTTGTTAC-TCACTTTAAAT
* * * * *
20944888 GAAATATTAATTCATTTATAATCTTACAAATGATTACT-AATTGAGATATTTGGACTTTATGGTC
1 GATATATTAATTCATTTATAATCTTATAAATGATTA-TAAATTGAAATCTTTGGACTTTATGGTT
* * *
20944952 AAAACCTATCATAATTGGATGTTTGAATTGGAAAACGTGAAGTGGATGGTATCCATTGACAAGAA
65 AAAACCTATCATAATTGGATGTTTGCATTGGGAAACGTGAAGTGGATGCTATCCATTGACAAGAA
* * * *
20945017 AAGACTATTTTAAGTTAATCGTGACATCAAAAGCTTTGTCACTCACTTTAAACT
130 AAGACCATTTTAAGTTAATCATGCCATC-AAAGCTTTGTTACTCACTTTAAA-T
* * * * *
20945071 -ATATATTAAGTCATTTATAATGTTATAACTGATTATAAATTGAAATCTTTAGACTTGATGGTTA
1 GATATATTAATTCATTTATAATCTTATAAATGATTATAAATTGAAATCTTTGGACTTTATGGTTA
* * * *
20945135 AAATCTATCATAA-TGAGATGTTTGTATTGGGAAACGTGAAGTGGATGCAATTCC-TTGACCAGA
66 AAACCTATCATAATTG-GATGTTTGCATTGGGAAACGTGAAGTGGATGCTA-TCCATTGACAAGA
* * *** ***
20945198 AAACACCATTTTAAGTTCATCATTTGATCAAAAGCTTTGTTACTCACTTTCTTT
129 AAAGACCATTTTAAGTTAATCATGCCATC-AAAGCTTTGTTACTCACTTTAAAT
** * *
20945252 GATATATTAATTCATTTATAATCTTATAAATGATTATAAATCAAAATCTATGGACTTTATGGTTT
1 GATATATTAATTCATTTATAATCTTATAAATGATTATAAATTGAAATCTTTGGACTTTATGGTTA
* ** * * * *
20945317 GAACCTATTGTAATTGGATGTTTGTATTGGGAAACATGAAGTGGATGCCATTCATTG-CGAAGAA
66 AAACCTATCATAATTGGATGTTTGCATTGGGAAACGTGAAGTGGATGCTATCCATTGAC-AAGAA
* * *
20945381 AAGACCTTTTTAAGCTAATCATACCATCAATAGCTTTGTTACTCACTTTAAAT
130 AAGACCATTTTAAGTTAATCATGCCATCAA-AGCTTTGTTACTCACTTTAAAT
* * ** * * *
20945434 GATCTATTAATACATTTATAATCTTATAAATGATGCTAAATCT-AAATCATTGGACTTTATGATC
1 GATATATTAATTCATTTATAATCTTATAAATGATTATAAAT-TGAAATCTTTGGACTTTATGGTT
* ** ** * * * * *
20945498 AAAACATATTGTAATTGGATGTTTGCATTCAGAAATGTGAAATGGATGATATCAATTCTA-AAGA
65 AAAACCTATCATAATTGGATGTTTGCATTGGGAAACGTGAAGTGGATGCTATCCATT-GACAAGA
* * * * * * *
20945562 AAAGGCCCTTTTCAGTTAATCATGCCATCGAAAGCTTTGATACACGCTTTAAGT
129 AAAGACCATTTTAAGTTAATCATGCCATC-AAAGCTTTGTTACTCACTTTAAAT
* * * * * * *
20945616 GATAAATTAATTTATCTATAACCTTATAATTGATTATTAATTGAGAA-ATTTGGACTTTAT
1 GATATATTAATTCATTTATAATCTTATAAATGATTATAAATTGA-AATCTTTGGACTTTAT
20945676 TTGTGAGACC
Statistics
Matches: 5926, Mismatches: 1217, Indels: 378
0.79 0.16 0.05
Matches are distributed among these distances:
168 1 0.00
169 42 0.01
170 80 0.01
172 3 0.00
175 1 0.00
176 1 0.00
177 5 0.00
178 147 0.02
179 27 0.00
180 212 0.04
181 1002 0.17
182 3999 0.67
183 66 0.01
184 17 0.00
185 153 0.03
186 13 0.00
187 9 0.00
188 8 0.00
189 7 0.00
190 9 0.00
191 8 0.00
192 10 0.00
193 15 0.00
194 3 0.00
195 3 0.00
196 1 0.00
197 59 0.01
198 25 0.00
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.37
Consensus pattern (181 bp):
GATATATTAATTCATTTATAATCTTATAAATGATTATAAATTGAAATCTTTGGACTTTATGGTTA
AAACCTATCATAATTGGATGTTTGCATTGGGAAACGTGAAGTGGATGCTATCCATTGACAAGAAA
AGACCATTTTAAGTTAATCATGCCATCAAAGCTTTGTTACTCACTTTAAAT
Found at i:20947359 original size:42 final size:42
Alignment explanation
Indices: 20947292--20947428 Score: 186
Period size: 42 Copynumber: 3.3 Consensus size: 42
20947282 TGTTGATTTG
*
20947292 GACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCATTGTT
1 GACCCGGCTATGTGAGAGTAGGAGTGCACATAAGCCATTGTT
* *
20947334 GACCTGGCTATGTGAGAGTAAGAGTGCACATAAG-CAGTTGTT
1 GACCCGGCTATGTGAGAGTAGGAGTGCACATAAGCCA-TTGTT
* * * * *
20947376 AACCCAGCTATGTGTGAGTGGGAGTGCACATAAGCCGTTGTT
1 GACCCGGCTATGTGAGAGTAGGAGTGCACATAAGCCATTGTT
20947418 GACCCGGCTAT
1 GACCCGGCTAT
20947429 ATGCGCATAA
Statistics
Matches: 81, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
41 2 0.02
42 78 0.96
43 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.25
Consensus pattern (42 bp):
GACCCGGCTATGTGAGAGTAGGAGTGCACATAAGCCATTGTT
Found at i:20948832 original size:18 final size:19
Alignment explanation
Indices: 20948809--20948848 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
20948799 CAAGTGGAGA
20948809 ATTTTA-GAATAAAATAAT
1 ATTTTATGAATAAAATAAT
* *
20948827 ATTTTATTAATAAAATATT
1 ATTTTATGAATAAAATAAT
20948846 ATT
1 ATT
20948849 AAAATATTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (19 bp):
ATTTTATGAATAAAATAAT
Found at i:20948845 original size:11 final size:11
Alignment explanation
Indices: 20948831--20948860 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
20948821 AATAATATTT
20948831 TATTAATAAAA
1 TATTAATAAAA
*
20948842 TATTATTAAAA
1 TATTAATAAAA
20948853 TATTAATA
1 TATTAATA
20948861 TTGGATTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (11 bp):
TATTAATAAAA
Found at i:20949834 original size:22 final size:22
Alignment explanation
Indices: 20949809--20949863 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
20949799 AGTTTCTCGT
20949809 TGTAGCGAGAATCCATTTTCGC
1 TGTAGCGAGAATCCATTTTCGC
* * * *
20949831 TGTAGCGAGAGTTCTTTTTCGT
1 TGTAGCGAGAATCCATTTTCGC
*
20949853 TGCAGCGAGAA
1 TGTAGCGAGAA
20949864 ACAGGGCTGG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.33
Consensus pattern (22 bp):
TGTAGCGAGAATCCATTTTCGC
Found at i:20950271 original size:43 final size:42
Alignment explanation
Indices: 20950150--20950285 Score: 146
Period size: 43 Copynumber: 3.2 Consensus size: 42
20950140 CGTCGAGTCA
* * *
20950150 TCATCATCGGCTTATGTGCACTCCCTACTTGCACATAGCCAGG
1 TCATCATCAGCTTATGTGCACTCCC-ACTCGCACATAGCCGGG
* * ** *
20950193 CCATCATCAGCTTATGCGCACTCTTTACTCGCACATAACCGGG
1 TCATCATCAGCTTATGTGCACTC-CCACTCGCACATAGCCGGG
* * *
20950236 TCATCATCAGCTCATGTGCACTCCCACATCACACATAGCTGGG
1 TCATCATCAGCTTATGTGCACTCCCAC-TCGCACATAGCCGGG
20950279 TCATCAT
1 TCATCAT
20950286 TATCACACAA
Statistics
Matches: 75, Mismatches: 16, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
42 2 0.03
43 73 0.97
ACGTcount: A:0.24, C:0.34, G:0.16, T:0.26
Consensus pattern (42 bp):
TCATCATCAGCTTATGTGCACTCCCACTCGCACATAGCCGGG
Found at i:20954070 original size:22 final size:22
Alignment explanation
Indices: 20954039--20954081 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
20954029 TCGAGTGGTA
*
20954039 TCAGAGCATTTGGTTTTAAAGG
1 TCAGAACATTTGGTTTTAAAGG
20954061 TCAGAACATTTGGTTTTAAAG
1 TCAGAACATTTGGTTTTAAAG
20954082 TTGTTTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.30, C:0.09, G:0.23, T:0.37
Consensus pattern (22 bp):
TCAGAACATTTGGTTTTAAAGG
Found at i:20957443 original size:38 final size:40
Alignment explanation
Indices: 20957401--20957504 Score: 133
Period size: 38 Copynumber: 2.6 Consensus size: 40
20957391 ATAGTGCCCG
* *
20957401 TGTGCAAGATGTGGGGGGATGTACACGAT-G-GCACTGAT-
1 TGTGCACGATGTGGGGGGATGTACACGATGGTGC-CGGATA
* *
20957439 TGTGCACGATGTGGGGGGATGCACACGATGGTGCCGGCTA
1 TGTGCACGATGTGGGGGGATGTACACGATGGTGCCGGATA
20957479 TGTGCACGATGTGGGGGGGATGTACA
1 TGTGCACGATGT-GGGGGGATGTACA
20957505 TGAGTCGGGT
Statistics
Matches: 57, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
38 27 0.47
39 4 0.07
40 14 0.25
41 12 0.21
ACGTcount: A:0.20, C:0.15, G:0.42, T:0.22
Consensus pattern (40 bp):
TGTGCACGATGTGGGGGGATGTACACGATGGTGCCGGATA
Found at i:20966725 original size:41 final size:39
Alignment explanation
Indices: 20966657--20966773 Score: 128
Period size: 41 Copynumber: 2.9 Consensus size: 39
20966647 TCAGCTCGTA
* *
20966657 TGCACTCCCACTAGCACAT-GGCTGGGTCATATCGGCTCATG
1 TGCACTCCCACTAGCACATAGTC-GGGTCAGATCGGCT--TG
* *
20966698 TGCACTCCTACTAGCACATAGTCGGGTCAGCTCGGCTTG
1 TGCACTCCCACTAGCACATAGTCGGGTCAGATCGGCTTG
*
20966737 TGCTCACTCCCACTCGCACATAGTCGGGTCAGCATCG
1 TG--CACTCCCACTAGCACATAGTCGGGTCAG-ATCG
20966774 ACTTATGCGC
Statistics
Matches: 65, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
39 4 0.06
41 56 0.86
42 5 0.08
ACGTcount: A:0.19, C:0.33, G:0.24, T:0.24
Consensus pattern (39 bp):
TGCACTCCCACTAGCACATAGTCGGGTCAGATCGGCTTG
Found at i:20966800 original size:42 final size:41
Alignment explanation
Indices: 20966699--20966809 Score: 127
Period size: 42 Copynumber: 2.7 Consensus size: 41
20966689 CGGCTCATGT
* *
20966699 GCACTCCTACT-AGCACATAGTCGGGTCAGCTCGGCTTGTGC
1 GCACTCCTACTCA-CACATAGTCGGGTCAGCTCGACTTATGC
* * *
20966740 TCACTCCCACTCGCACATAGTCGGGTCAGCATCGACTTATGC
1 GCACTCCTACTCACACATAGTCGGGTCAGC-TCGACTTATGC
*
20966782 GCACTCTTACTCACACATAG-CTGGGTCA
1 GCACTCCTACTCACACATAGTC-GGGTCA
20966810 ATATCATTAC
Statistics
Matches: 58, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
41 27 0.47
42 31 0.53
ACGTcount: A:0.21, C:0.33, G:0.22, T:0.24
Consensus pattern (41 bp):
GCACTCCTACTCACACATAGTCGGGTCAGCTCGACTTATGC
Found at i:20970582 original size:28 final size:30
Alignment explanation
Indices: 20970524--20970583 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 30
20970514 TTTTTGAAAT
20970524 TTACACTTTTGGCCCCATAAAAGTCAAAAA
1 TTACACTTTTGGCCCCATAAAAGTCAAAAA
* * *
20970554 TTACA-TTTTTGCCCCA-AAAATTGAAAAA
1 TTACACTTTTGGCCCCATAAAAGTCAAAAA
20970582 TT
1 TT
20970584 GCCCAAACAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 12 0.44
29 10 0.37
30 5 0.19
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (30 bp):
TTACACTTTTGGCCCCATAAAAGTCAAAAA
Found at i:20972018 original size:361 final size:359
Alignment explanation
Indices: 20971362--20972444 Score: 1058
Period size: 361 Copynumber: 3.0 Consensus size: 359
20971352 TACATATCCC
* * * * * * *
20971362 TTGAGAAGAAAAGACCATTTTAAGTTAATCATGCATTCGAAAGCTCTGTTACTC-ACTTTAAA-G
1 TTGACAAGAAAAGACCATTTAAAGTTAATCAAGCATTCAAAAGCTCTATCAATCGA-TTTAAATG
* **
20971425 ATATATTAATTCATTTGTAATCTTATAAATGATTATTAATCAAAATCTTTGGACTT-TACGGTTA
65 ATATATTAATTCATTTATAATCTTATAAATGATTATTAATTGAAATCTTTGGACTTAT-C-GTTA
* * * * * * **
20971489 ATACATATTGTCACTGGATGTTTCATTGGGAAACGTGAAGTGGATGCTATTCATTATAAAGAAAA
128 AAACCTATTGTAATTGGATGTTTGATTGGGAAACATGAAGTGGATGCTATTCATT-CCAAGAAAA
* * * * * * *
20971554 GACCATTTTAAGTTAATCAAGCCATCAAAAGCATTGTTACTCACTTTAAATGATGTATTACTTCA
192 GACTATTTTAAGCTAATCATGCCATTAAAAGC-TT-TGACTCACTTTAAAAGATGTATTAATTCA
* *
20971619 TTTATAATCTTATAAATGA-T-TAAATAAAAATATTTGGACTTTATGACCAAAACCAATTATAAT
255 TTTATAATCTTATAAATGATTATAAATAAAAATCTTTGGACTTTATGATCAAAACCAATTATAAT
* * * *
20971682 TGGATGTTTGGATTTAGAAATATGAAGTGTATGCTATCAA
320 TGGATGTTTGCATTTAGAAACATGAAATGCATGCTATCAA
* * * * * * *
20971722 TTGTCTAGCACATACCATTTTAAGTTAATCAAGTCA-TCAAAAGCTTTAATCAAT-GATTTAAAT
1 TTGACAAGAAAAGACCATTTAAAGTTAATCAAG-CATTCAAAAGCTCT-ATCAATCGATTTAAAT
* * *
20971785 GATAAATTAATTCATTTATAATCTTATAAATGATTATTAATTGAGATATTTGGACTTATCGTTAA
64 GATATATTAATTCATTTATAATCTTATAAATGATTATTAATTGAAATCTTTGGACTTATCGTTAA
** * * * * * * * *
20971850 AACCTATCATTATTGGATGTTTGAGTTAGAAAACATGAAGCGGATGGTATGCATTGGCAACAAAA
129 AACCTATTGTAATTGGATGTTTGA-TTGGGAAACATGAAGTGGATGCTATTCATT-CCAAGAAAA
* * * * *
20971915 GACTATTTTAAGGTAATCATGCCATTGAAAGCTTTGACTCACTTTGAACGATATATTAATTCATT
192 GACTATTTTAAGCTAATCATGCCATTAAAAGCTTTGACTCACTTTAAAAGATGTATTAATTCATT
* * ** * *
20971980 TGTAATCTTATAAATTATTATAAATTGAAATCTTTGGACTTTAT-AGTTAAAACCTAA-CATAAT
257 TATAATCTTATAAATGATTATAAATAAAAATCTTTGGACTTTATGA-TCAAAACC-AATTATAAT
** * **
20972043 TGGATGTTTGCATTGGGAAACATGAAATGCATGTTATCCC
320 TGGATGTTTGCATTTAGAAACATGAAATGCATGCTATCAA
* * * * *
20972083 TTGACAAGAAAAGACCATTTAAAGTTAATCATGCATTCAAAAGCTCTGTTACTCGCTTTAAATGA
1 TTGACAAGAAAAGACCATTTAAAGTTAATCAAGCATTCAAAAGCTCTATCAATCGATTTAAATGA
* * * *
20972148 TATATTAATTCATTTATAATCGTATAAACGATTA-TAAATGAAAATCTTTGGACTTTATGGTTAA
66 TATATTAATTCATTTATAATCTTATAAATGATTATTAATTG-AAATCTTTGGAC-TTATCGTTAA
*
20972212 AACCTATTGTAATTGGATGTTTGCATTGGGAAACAT-AATGTGGATGTTATTCATTCCAAAGAAA
129 AACCTATTGTAATTGGATGTTTG-ATTGGGAAACATGAA-GTGGATGCTATTCATTCC-AAGAAA
* * * * *
20972276 AGACCT-TTTTAAGCTAATCATGCCATCAATAGCTTTGTTACTCATTTTAAATA-TTGTTTTAAT
191 AGA-CTATTTTAAGCTAATCATGCCATTAAAAGCTTTG--ACTCACTTTAAA-AGATGTATTAAT
* * * * * *
20972339 ACATTTATAATCTTATTAATGATTATAAATCAAAATCTTTGGACTTTATGATCTAAACCTATTAG
252 TCATTTATAATCTTATAAATGATTATAAATAAAAATCTTTGGACTTTATGATCAAAACCAATTAT
* * * *
20972404 AATTGGATGTTTGCATTTCGAAACAAGAAATGGATGTTATC
317 AATTGGATGTTTGCATTTAGAAACATGAAATGCATGCTATC
20972445 TGTAATACCC
Statistics
Matches: 584, Mismatches: 116, Indels: 42
0.79 0.16 0.06
Matches are distributed among these distances:
359 41 0.07
360 77 0.13
361 268 0.46
362 89 0.15
363 4 0.01
364 104 0.18
365 1 0.00
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.37
Consensus pattern (359 bp):
TTGACAAGAAAAGACCATTTAAAGTTAATCAAGCATTCAAAAGCTCTATCAATCGATTTAAATGA
TATATTAATTCATTTATAATCTTATAAATGATTATTAATTGAAATCTTTGGACTTATCGTTAAAA
CCTATTGTAATTGGATGTTTGATTGGGAAACATGAAGTGGATGCTATTCATTCCAAGAAAAGACT
ATTTTAAGCTAATCATGCCATTAAAAGCTTTGACTCACTTTAAAAGATGTATTAATTCATTTATA
ATCTTATAAATGATTATAAATAAAAATCTTTGGACTTTATGATCAAAACCAATTATAATTGGATG
TTTGCATTTAGAAACATGAAATGCATGCTATCAA
Found at i:20972213 original size:182 final size:181
Alignment explanation
Indices: 20971356--20972444 Score: 1071
Period size: 182 Copynumber: 6.0 Consensus size: 181
20971346 ACTCGTTACA
* * *
20971356 TATCCCTTGAGAAGAAAAGACCATTTTAAGTTAATCATG-CATTCGAAAGCTCTGTTACTCACTT
1 TATCCATTGACAAGAAAAGACCATTTTAAGTTAATCATGCCA-TCAAAAGCT-TGTTACTCACTT
* * * *
20971420 TAAA-GATATATTAATTCATTTGTAATCTTATAAATGATTATTAATCAAAATCTTTGGACTTTAC
64 TAAATGATATATTAATTCATTTATAATCTTATAAATGATTATAAATGAAAATCTTTGGACTTTAT
* * * * * * *
20971484 GGTTAATACATATTGTCACTGGATGTTT-CATTGGGAAACGTGAAGTGGATGC
129 GGTTAAAACCTATTATAATTGGATGTTTGCATTGGGAAACATGAAGTGGATGT
* * *
20971536 TATTCATT-ATAAAGAAAAGACCATTTTAAGTTAATCAAGCCATCAAAAGCATTGTTACTCACTT
1 TATCCATTGA-CAAGAAAAGACCATTTTAAGTTAATCATGCCATCAAAAGC-TTGTTACTCACTT
* * * *
20971600 TAAATGATGTATTACTTCATTTATAATCTTATAAATGA-T-TAAATAAAAATATTTGGACTTTAT
64 TAAATGATATATTAATTCATTTATAATCTTATAAATGATTATAAATGAAAATCTTTGGACTTTAT
*** * * ** * * *
20971663 GACCAAAACCAATTATAATTGGATGTTTGGATTTAGAAATATGAAGTGTATGC
129 GGTTAAAACCTATTATAATTGGATGTTTGCATTGGGAAACATGAAGTGGATGT
* * * * * * * * * *
20971716 TATCAATTGTCTAGCACATACCATTTTAAGTTAATCAAGTCATCAAAAGC-T-TTAATCAATGAT
1 TATCCATTGACAAGAAAAGACCATTTTAAGTTAATCATGCCATCAAAAGCTTGTTACTC-A--CT
* * * *
20971779 TTAAATGATAAATTAATTCATTTATAATCTTATAAATGATTATTAATTG-AGATATTTGGAC-TT
63 TTAAATGATATATTAATTCATTTATAATCTTATAAATGATTA-TAAATGAAAATCTTTGGACTTT
* * * * * * *
20971842 ATCGTTAAAACCTATCATTATTGGATGTTTG-AGTTAGAAAACATGAAGCGGATGG
127 ATGGTTAAAACCTATTATAATTGGATGTTTGCA-TTGGGAAACATGAAGTGGATGT
* * * * * ** * *
20971897 TATGCATTGGCAACAAAAGACTATTTTAAGGTAATCATGCCATTGAAAGCTT-TGACTCACTTTG
1 TATCCATTGACAAGAAAAGACCATTTTAAGTTAATCATGCCATCAAAAGCTTGTTACTCACTTTA
* * * *
20971961 AACGATATATTAATTCATTTGTAATCTTATAAATTATTATAAATTG-AAATCTTTGGACTTTATA
66 AATGATATATTAATTCATTTATAATCTTATAAATGATTATAAA-TGAAAATCTTTGGACTTTATG
** * *
20972025 GTTAAAACCTAACATAATTGGATGTTTGCATTGGGAAACATGAAATGCATGT
130 GTTAAAACCTATTATAATTGGATGTTTGCATTGGGAAACATGAAGTGGATGT
* * *
20972077 TATCCCTTGACAAGAAAAGACCATTTAAAGTTAATCATG-CATTCAAAAGCTCTGTTACTCGCTT
1 TATCCATTGACAAGAAAAGACCATTTTAAGTTAATCATGCCA-TCAAAAGCT-TGTTACTCACTT
* *
20972141 TAAATGATATATTAATTCATTTATAATCGTATAAACGATTATAAATGAAAATCTTTGGACTTTAT
64 TAAATGATATATTAATTCATTTATAATCTTATAAATGATTATAAATGAAAATCTTTGGACTTTAT
*
20972206 GGTTAAAACCTATTGTAATTGGATGTTTGCATTGGGAAACAT-AATGTGGATGT
129 GGTTAAAACCTATTATAATTGGATGTTTGCATTGGGAAACATGAA-GTGGATGT
* * * * * *
20972259 TATTCATT-CCAAAGAAAAGACCTTTTTAAGCTAATCATGCCATCAATAGCTTTGTTACTCATTT
1 TATCCATTGAC-AAGAAAAGACCATTTTAAGTTAATCATGCCATCAAAAGC-TTGTTACTCACTT
* * * * *
20972323 TAAAT-ATTGTTTTAATACATTTATAATCTTATTAATGATTATAAATCAAAATCTTTGGACTTTA
64 TAAATGA-TATATTAATTCATTTATAATCTTATAAATGATTATAAATGAAAATCTTTGGACTTTA
* * ** * *
20972387 TGATCT-AAACCTATTAGAATTGGATGTTTGCATTTCGAAACAAGAAATGGATGT
128 TGGT-TAAAACCTATTATAATTGGATGTTTGCATTGGGAAACATGAAGTGGATGT
20972441 TATC
1 TATC
20972445 TGTAATACCC
Statistics
Matches: 742, Mismatches: 139, Indels: 54
0.79 0.15 0.06
Matches are distributed among these distances:
177 5 0.01
178 5 0.01
179 92 0.12
180 238 0.32
181 120 0.16
182 272 0.37
183 10 0.01
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.37
Consensus pattern (181 bp):
TATCCATTGACAAGAAAAGACCATTTTAAGTTAATCATGCCATCAAAAGCTTGTTACTCACTTTA
AATGATATATTAATTCATTTATAATCTTATAAATGATTATAAATGAAAATCTTTGGACTTTATGG
TTAAAACCTATTATAATTGGATGTTTGCATTGGGAAACATGAAGTGGATGT
Found at i:20975289 original size:34 final size:35
Alignment explanation
Indices: 20975243--20975337 Score: 111
Period size: 35 Copynumber: 2.7 Consensus size: 35
20975233 ACAGCCAAAG
20975243 CTTCAAAGATCAGCAGCCAAAACTGCACC-TTCAGC
1 CTTCAAA-ATCAGCAGCCAAAACTGCACCTTTCAGC
* * ** *
20975278 TTTCAAAATCAGCAACCAAAACCACACCTTTTAGC
1 CTTCAAAATCAGCAGCCAAAACTGCACCTTTCAGC
* *
20975313 CTTCAAAATCAGCAGCTAAAGCTGC
1 CTTCAAAATCAGCAGCCAAAACTGC
20975338 TCCTCTCACC
Statistics
Matches: 48, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
34 18 0.38
35 30 0.62
ACGTcount: A:0.37, C:0.32, G:0.12, T:0.20
Consensus pattern (35 bp):
CTTCAAAATCAGCAGCCAAAACTGCACCTTTCAGC
Found at i:20981543 original size:171 final size:170
Alignment explanation
Indices: 20981255--20982201 Score: 1112
Period size: 171 Copynumber: 5.5 Consensus size: 170
20981245 AGAGCAGTAT
* * **
20981255 TTGAATTTTTTTACATTTTCGGCTAAGAA-AGGTTATAATTGAATGTTTACCTCAAGAAACATGA
1 TTGAATTTTTTT-CATTTTTGGTTAA-AACAAATTATAATTGAATGTTTACCTCAAGAAACATGA
*
20981319 AGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATT
64 AGCGAAAGCCATCCATTGGCAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATT
* *
20981384 ACTTGCATTAAATGGTTTTATGATCTCATTATTGATTTTAAG
129 ACTTGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAG
* * * *** *
20981426 TTGAATTTTCTTTCATTTTTTGTTAAAATAGATTATAATTGAATGTTTACCTTGGGAAACGTGAA
1 TTGAATTTT-TTTCATTTTTGGTTAAAACAAATTATAATTGAATGTTTACCTCAAGAAACATGAA
* * * *
20981491 GCAAAAACCATCCATTGGCAAGAAAAGTCCATTAATAGTCAC-CTAAGCCTTCGAAAGCCTTATT
65 GCGAAAGCCATCCATTGGCAAGAAAAGTCCATTTATAGTCACTC-ATGCCTTCGAAAGCCTTATT
*
20981555 ACTTGCTTTAAATAGTTTTATAATCTCATTATTGATTTTAAG
129 ACTTGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAG
* * * * * *
20981597 TTGAATTTTTTTATATTTTTTGTTTAAACAAATCATAATTGAATGTTTACCTCAAGAAACGTGAG
1 TTGAATTTTTTT-CATTTTTGGTTAAAACAAATTATAATTGAATGTTTACCTCAAGAAACATGAA
* * * * * *
20981662 GCTAAAACCCTCTATTGGCAGGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTA
65 GCGAAAGCCATCCATTGGCAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTA
* * * *
20981727 CTCGCTTCAAATGGTTTTATAATTTGATTATTGATTTTAAG
130 CTTGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAG
* * * * * *
20981768 CTGAATTTTTTTACATTTTTGGTTAAAAGAGATTGTAATTGAATGTTTGCCTCAAGAAACGTGAA
1 TTGAATTTTTTT-CATTTTTGGTTAAAACAAATTATAATTGAATGTTTACCTCAAGAAACATGAA
* * * * * * *
20981833 GCGAAAGCTATCGACTGACAAGAAAATTCCATTTATTA-TCGCTCATGCCTTCAAAAGCCTTATT
65 GCGAAAGCCATCCATTGGCAAGAAAAGTCCATTTA-TAGTCACTCATGCCTTCGAAAGCCTTATT
** *
20981897 ACTCACTTTAAATGGTTTT-TAAGCTCATTATTGATTTTAAG
129 ACTTGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAG
* * * **
20981938 TTGAATTTTCTTACATTTTTGGTTAAAACATATTATAATTGAATGTTTGCCTCTGGAAACATGAA
1 TTGAATTTT-TTTCATTTTTGGTTAAAACAAATTATAATTGAATGTTTACCTCAAGAAACATGAA
* * * *
20982003 GCGAAAGCCAACGATTGGCAAGAAAAGTCCATTTATAGTGACTCATGCCTTGGAAAGCCTTATTA
65 GCGAAAGCCATCCATTGGCAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTA
* * * *
20982068 CTTACTTTGAATAGTTTTATAATCTGATTATTGATTTTAAG
130 CTTGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAG
* * * * * *
20982109 CTGAATTTTTTAACATTATTGGTTAAAAAAAATTATAATTGAATTTTTACCTTGAA-AAACATGA
1 TTGAATTTTTT-TCATTTTTGGTTAAAACAAATTATAATTGAATGTTTACC-TCAAGAAACATGA
* * *
20982173 AGCAAAATCCATCCATTGGTAAGAAAAGT
64 AGCGAAAGCCATCCATTGGCAAGAAAAGT
20982202 NNNNNNNNNN
Statistics
Matches: 665, Mismatches: 100, Indels: 22
0.84 0.13 0.03
Matches are distributed among these distances:
169 2 0.00
170 149 0.22
171 507 0.76
172 7 0.01
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.38
Consensus pattern (170 bp):
TTGAATTTTTTTCATTTTTGGTTAAAACAAATTATAATTGAATGTTTACCTCAAGAAACATGAAG
CGAAAGCCATCCATTGGCAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTAC
TTGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAG
Found at i:20981892 original size:342 final size:340
Alignment explanation
Indices: 20981289--20982201 Score: 1159
Period size: 341 Copynumber: 2.7 Consensus size: 340
20981279 AAGAAAGGTT
*
20981289 ATAATTGAATGTTTACCTCAAGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTT
1 ATAATTGAATGTTTACCTCAAGAAACATGAAGCGAAAGCCATCCATTGGCAAGAAAAGTCCATTT
* *
20981354 ATAGTCACTCATGCCTTCGAAAGCCTTATTACTTGCATTAAATGGTTTTATGATCTCATTATTGA
66 ATAGTCACTCATGCCTTCGAAAGCCTTATTACTTGC-TTAAATGGTTTTATAATCTGATTATTGA
* * * ***
20981419 TTTTAAGTTGAATTTTCTTT-CATTTTTTGTTAAAATAGATTATAATTGAATGTTTACCTTGGGA
130 TTTTAAGCTGAATTTT-TTTACATTTTTGGTTAAAAAAGATTATAATTGAATGTTTACCTCAAGA
* * *
20981483 AACGTGAAGCAAAAACCATCCATTGGCAAGAAAAGTCCATTAATAGTCACCTAAGCCTTCGAAAG
194 AACGTGAAGCAAAAACCATCCACTGACAAGAAAAGTCCATTAATAGTCACCTAAGCCTTCAAAAG
** * * *
20981548 CCTTATTACTTGCTTTAAATAGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTATAT
259 CCTTATTACTCACTTTAAATAGTTTT-TAAGCTCATTATTGATTTTAAGTTGAATTTTCTTACAT
* *
20981613 TTTTTGTTTAAACAAATC
323 TTTTGGTTAAAACAAATC
* * * * * * * *
20981631 ATAATTGAATGTTTACCTCAAGAAACGTGAGGCTAAAACCCTCTATTGGCAGGAAAAGTTCATTT
1 ATAATTGAATGTTTACCTCAAGAAACATGAAGCGAAAGCCATCCATTGGCAAGAAAAGTCCATTT
* *
20981696 ATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTCAAATGGTTTTATAATTTGATTATTGA
66 ATAGTCACTCATGCCTTCGAAAGCCTTATTACTTGCTT-AAATGGTTTTATAATCTGATTATTGA
* * *
20981761 TTTTAAGCTGAATTTTTTTACATTTTTGGTTAAAAGAGATTGTAATTGAATGTTTGCCTCAAGAA
130 TTTTAAGCTGAATTTTTTTACATTTTTGGTTAAAAAAGATTATAATTGAATGTTTACCTCAAGAA
* * * * * * * *
20981826 ACGTGAAGCGAAAGCTATCGACTGACAAGAAAATTCCATTTATTA-TC-GCTCATGCCTTCAAAA
195 ACGTGAAGCAAAAACCATCCACTGACAAGAAAAGTCCA-TTAATAGTCACCT-AAGCCTTCAAAA
*
20981889 GCCTTATTACTCACTTTAAATGGTTTTTAAGCTCATTATTGATTTTAAGTTGAATTTTCTTACAT
258 GCCTTATTACTCACTTTAAATAGTTTTTAAGCTCATTATTGATTTTAAGTTGAATTTTCTTACAT
* *
20981954 TTTTGGTTAAAACATATT
323 TTTTGGTTAAAACAAATC
* ** * *
20981972 ATAATTGAATGTTTGCCTCTGGAAACATGAAGCGAAAGCCAACGATTGGCAAGAAAAGTCCATTT
1 ATAATTGAATGTTTACCTCAAGAAACATGAAGCGAAAGCCATCCATTGGCAAGAAAAGTCCATTT
* * * * *
20982037 ATAGTGACTCATGCCTTGGAAAGCCTTATTACTTACTTTGAATAGTTTTATAATCTGATTATTGA
66 ATAGTCACTCATGCCTTCGAAAGCCTTATTACTTGC-TTAAATGGTTTTATAATCTGATTATTGA
* * * * *
20982102 TTTTAAGCTGAATTTTTTAACATTATTGGTTAAAAAAAATTATAATTGAATTTTTACCTTGAA-A
130 TTTTAAGCTGAATTTTTTTACATTTTTGGTTAAAAAAGATTATAATTGAATGTTTACC-TCAAGA
* * * **
20982166 AACATGAAGCAAAATCCATCCATTGGTAAGAAAAGT
194 AACGTGAAGCAAAAACCATCCACTGACAAGAAAAGT
20982202 NNNNNNNNNN
Statistics
Matches: 487, Mismatches: 78, Indels: 13
0.84 0.13 0.02
Matches are distributed among these distances:
341 243 0.50
342 239 0.49
343 5 0.01
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (340 bp):
ATAATTGAATGTTTACCTCAAGAAACATGAAGCGAAAGCCATCCATTGGCAAGAAAAGTCCATTT
ATAGTCACTCATGCCTTCGAAAGCCTTATTACTTGCTTAAATGGTTTTATAATCTGATTATTGAT
TTTAAGCTGAATTTTTTTACATTTTTGGTTAAAAAAGATTATAATTGAATGTTTACCTCAAGAAA
CGTGAAGCAAAAACCATCCACTGACAAGAAAAGTCCATTAATAGTCACCTAAGCCTTCAAAAGCC
TTATTACTCACTTTAAATAGTTTTTAAGCTCATTATTGATTTTAAGTTGAATTTTCTTACATTTT
TGGTTAAAACAAATC
Found at i:20982636 original size:20 final size:20
Alignment explanation
Indices: 20982619--20982656 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
20982609 CCTCAAATCT
20982619 TACTCCAATAAGTCAAATTA
1 TACTCCAATAAGTCAAATTA
20982639 TACTCCAATAAGTCAAAT
1 TACTCCAATAAGTCAAAT
20982657 GGGGCCAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.45, C:0.21, G:0.05, T:0.29
Consensus pattern (20 bp):
TACTCCAATAAGTCAAATTA
Found at i:20992292 original size:26 final size:27
Alignment explanation
Indices: 20992233--20992316 Score: 100
Period size: 27 Copynumber: 3.2 Consensus size: 27
20992223 GCTTTTCCAA
* * *
20992233 TTTTTCCTATTTGGGCTAAGCCCA-TT
1 TTTTTCCTACTTGGGCCATGCCCATTT
* *
20992259 TATCTCCTA-TTGGGCCATGCCCATTT
1 TTTTTCCTACTTGGGCCATGCCCATTT
*
20992285 TTTTTCCTACTTGGGCCATGCCCTTTT
1 TTTTTCCTACTTGGGCCATGCCCATTT
20992312 TTTTT
1 TTTTT
20992317 TCTTTTTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
25 12 0.24
26 16 0.33
27 21 0.43
ACGTcount: A:0.12, C:0.26, G:0.14, T:0.48
Consensus pattern (27 bp):
TTTTTCCTACTTGGGCCATGCCCATTT
Found at i:20992413 original size:22 final size:22
Alignment explanation
Indices: 20992382--20992429 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
20992372 CCGTCACTCC
* * *
20992382 CTTCACCACCGTGGCTTCTTCT
1 CTTCAACACCATGGCTTCCTCT
20992404 CTTCAACACCATGGCTTCCTCT
1 CTTCAACACCATGGCTTCCTCT
20992426 CTTC
1 CTTC
20992430 CTTTCCTTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.12, C:0.42, G:0.10, T:0.35
Consensus pattern (22 bp):
CTTCAACACCATGGCTTCCTCT
Found at i:20992625 original size:34 final size:34
Alignment explanation
Indices: 20992564--20992642 Score: 90
Period size: 34 Copynumber: 2.3 Consensus size: 34
20992554 CACAAAGCTG
20992564 TCCAATTTTCATGCACAAACTACCAGCAAACAGC
1 TCCAATTTTCATGCACAAACTACCAGCAAACAGC
* **
20992598 TCCAATATTTC-TGCACAAAGTGGCAGCAAAC-GAC
1 TCCAAT-TTTCATGCACAAACTACCAGCAAACAG-C
*
20992632 TCAAATTTTCA
1 TCCAATTTTCA
20992643 GTAGCCAAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
33 5 0.13
34 29 0.76
35 4 0.11
ACGTcount: A:0.37, C:0.28, G:0.11, T:0.24
Consensus pattern (34 bp):
TCCAATTTTCATGCACAAACTACCAGCAAACAGC
Found at i:20994187 original size:52 final size:52
Alignment explanation
Indices: 20994109--20994265 Score: 226
Period size: 52 Copynumber: 3.0 Consensus size: 52
20994099 ACTCTCACAT
*
20994109 CGCACATGGC-CTATATCATTAGTGTGTGCACTCACACAACACACCACTATCA
1 CGCACATGGCAC-ATATCATCAGTGTGTGCACTCACACAACACACCACTATCA
* *
20994161 CGCACATGGCACATATCATCAGTGTGTGCACTCACACAGCACACCACTATCG
1 CGCACATGGCACATATCATCAGTGTGTGCACTCACACAACACACCACTATCA
* * * * *
20994213 CGTATAGGGCATATATCATCAGTGCGTGCACTCACACAACACACCACTATCA
1 CGCACATGGCACATATCATCAGTGTGTGCACTCACACAACACACCACTATCA
20994265 C
1 C
20994266 CGTCATGTGC
Statistics
Matches: 94, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
52 93 0.99
53 1 0.01
ACGTcount: A:0.31, C:0.33, G:0.15, T:0.21
Consensus pattern (52 bp):
CGCACATGGCACATATCATCAGTGTGTGCACTCACACAACACACCACTATCA
Found at i:21000106 original size:20 final size:20
Alignment explanation
Indices: 21000080--21000125 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
21000070 AATCTTACCT
* *
21000080 TTTTTCACTTGTTTCCTTGAA
1 TTTTACACTT-TTCCCTTGAA
21000101 TTTTCACACTTTTCCCTTGAA
1 TTTT-ACACTTTTCCCTTGAA
21000122 TTTT
1 TTTT
21000126 TCCACCTAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.15, C:0.22, G:0.07, T:0.57
Consensus pattern (20 bp):
TTTTACACTTTTCCCTTGAA
Found at i:21000127 original size:22 final size:22
Alignment explanation
Indices: 21000085--21000125 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
21000075 TACCTTTTTT
*
21000085 CACTTGTTTCCTTGAATTTTCA
1 CACTTGTTCCCTTGAATTTTCA
21000107 CACTT-TTCCCTTGAATTTT
1 CACTTGTTCCCTTGAATTTT
21000126 TCCACCTAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.17, C:0.24, G:0.07, T:0.51
Consensus pattern (22 bp):
CACTTGTTCCCTTGAATTTTCA
Found at i:21001818 original size:13 final size:12
Alignment explanation
Indices: 21001795--21001835 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
21001785 GACATACTTT
*
21001795 AGAAGAAAAAAA
1 AGAAAAAAAAAA
*
21001807 TGAAAAAAAAAA
1 AGAAAAAAAAAA
21001819 AGAAAAAGAAAAA
1 AGAAAAA-AAAAA
21001832 AGAA
1 AGAA
21001836 GAGAAACAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
12 16 0.64
13 9 0.36
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (12 bp):
AGAAAAAAAAAA
Found at i:21001829 original size:18 final size:18
Alignment explanation
Indices: 21001802--21001846 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
21001792 TTTAGAAGAA
21001802 AAAAATGAAAAAAAAAAAG
1 AAAAA-GAAAAAAAAAAAG
* *
21001821 AAAAAGAAAAAAGAAGAG
1 AAAAAGAAAAAAAAAAAG
*
21001839 AAACAGAA
1 AAAAAGAA
21001847 GTAAGGACTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
18 18 0.78
19 5 0.22
ACGTcount: A:0.80, C:0.02, G:0.16, T:0.02
Consensus pattern (18 bp):
AAAAAGAAAAAAAAAAAG
Found at i:21003111 original size:25 final size:25
Alignment explanation
Indices: 21003063--21003111 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
21003053 GTTTTTATCA
*
21003063 AATGACAACAACATTTCAATTATAC
1 AATGACAACAACATTTCAACTATAC
* * *
21003088 AATGACTACCACATTTCAGCTATA
1 AATGACAACAACATTTCAACTATA
21003112 TATCAATACC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.43, C:0.22, G:0.06, T:0.29
Consensus pattern (25 bp):
AATGACAACAACATTTCAACTATAC
Found at i:21005751 original size:29 final size:29
Alignment explanation
Indices: 21005696--21005751 Score: 78
Period size: 28 Copynumber: 1.9 Consensus size: 29
21005686 GACAAGTGTT
*
21005696 GGGTGTGTAAAATTACAATTTTGCCCTTG
1 GGGTGTGTAAAATTACAATTTTCCCCTTG
*
21005725 GGGTG-GTAAAATTACCATTTTACCCCT
1 GGGTGTGTAAAATTACAATTTT-CCCCT
21005752 ATGCTCCGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 15 0.62
29 9 0.38
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.36
Consensus pattern (29 bp):
GGGTGTGTAAAATTACAATTTTCCCCTTG
Found at i:21009910 original size:21 final size:21
Alignment explanation
Indices: 21009868--21009910 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
21009858 CTTGTACCAG
*
21009868 TGGTGGAACTAAAGGAGTAAC
1 TGGTGGAACTAAAGGAGGAAC
* * *
21009889 TGGTGGTACTATAGGTGGAAC
1 TGGTGGAACTAAAGGAGGAAC
21009910 T
1 T
21009911 TGACCAGTCG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.09, G:0.35, T:0.26
Consensus pattern (21 bp):
TGGTGGAACTAAAGGAGGAAC
Found at i:21010325 original size:22 final size:22
Alignment explanation
Indices: 21010300--21010362 Score: 108
Period size: 22 Copynumber: 2.9 Consensus size: 22
21010290 TTTAAAACCA
* *
21010300 CTTTAAAACAAAAAACTCTTAT
1 CTTTAAAACCAAAAGCTCTTAT
21010322 CTTTAAAACCAAAAGCTCTTAT
1 CTTTAAAACCAAAAGCTCTTAT
21010344 CTTTAAAACCAAAAGCTCT
1 CTTTAAAACCAAAAGCTCT
21010363 GATACCAATA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 39 1.00
ACGTcount: A:0.44, C:0.22, G:0.03, T:0.30
Consensus pattern (22 bp):
CTTTAAAACCAAAAGCTCTTAT
Found at i:21015263 original size:70 final size:69
Alignment explanation
Indices: 21015124--21015306 Score: 190
Period size: 70 Copynumber: 2.6 Consensus size: 69
21015114 CCCCTTTTCC
* * * *
21015124 CTTTCACAAGATCGACTATAGAGGGTCTATAGTCGATCTTGGACAAAAATGTCTATTTTTAGTCG
1 CTTT-ACAAGATCGACTATAGAGGGTCTATAGTCAATCTTGGACAAAAATGTCCATTTCTAG-CC
21015189 ATTTTG
64 ATTTTG
* * *
21015195 CTTTACAAGATAGACTATGGAGGGTCTATAGTCAATCTTGGATC-AGAATGTTCACATTTCTA-C
1 CTTTACAAGATCGACTATAGAGGGTCTATAGTCAATCTTGGA-CAAAAATG-TC-CATTTCTAGC
*
21015258 CATTTTT
63 CATTTTG
* * * *
21015265 CCTTCCTAGGATCGACTATAGAGGGCCTATAGTCAATCTTGG
1 CTTTAC-AAGATCGACTATAGAGGGTCTATAGTCAATCTTGG
21015307 GCTAGAATGT
Statistics
Matches: 94, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
70 50 0.53
71 38 0.40
72 6 0.06
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (69 bp):
CTTTACAAGATCGACTATAGAGGGTCTATAGTCAATCTTGGACAAAAATGTCCATTTCTAGCCAT
TTTG
Found at i:21016784 original size:64 final size:64
Alignment explanation
Indices: 21016691--21016894 Score: 302
Period size: 64 Copynumber: 3.2 Consensus size: 64
21016681 TCCCCACTTT
* * * *
21016691 GCACATGCATGGTAGTAATTATCACAACCTTTATCATTAAACCGACATTTGTACTTCCCACTCC
1 GCACATGCACGGTCGTAATTATCACAACCTTTATCATTAAACCGGCATTTGCACTTCCCACTCC
*
21016755 GCACATGCACGGTCGTAATTATCATAACCTTTATCATTAAACCGGCATTTGCACTTCCCACTCC
1 GCACATGCACGGTCGTAATTATCACAACCTTTATCATTAAACCGGCATTTGCACTTCCCACTCC
* * * * * *
21016819 GCACATGCACAGTCATAATTATCACATCCTTTGTCATTCAACTGGCA-TTGCACTTCCCACTCC
1 GCACATGCACGGTCGTAATTATCACAACCTTTATCATTAAACCGGCATTTGCACTTCCCACTCC
21016882 GCACATGCACGGT
1 GCACATGCACGGT
21016895 TGCATCAATT
Statistics
Matches: 127, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
63 28 0.22
64 99 0.78
ACGTcount: A:0.27, C:0.31, G:0.13, T:0.29
Consensus pattern (64 bp):
GCACATGCACGGTCGTAATTATCACAACCTTTATCATTAAACCGGCATTTGCACTTCCCACTCC
Found at i:21030220 original size:114 final size:112
Alignment explanation
Indices: 21029994--21030206 Score: 261
Period size: 114 Copynumber: 1.9 Consensus size: 112
21029984 CCTTTTAATT
* ** *
21029994 TTAATTTTTAAACCAATTTGAAAAATAATTTTATTTTTTCCAATTAATTGATCTCATTAATTAAT
1 TTAATTTTTAAACCAATTTGAAAAATAATTTTATTTTGTAAAATTAATTAATCTCATTAATTAAT
* * *
21030059 ACTAAAATAAAATAATTTTCAATCCATGGTTAAAATAAATTAGTTTTCA
66 ACTAAAATAAAATAATTTTCAATCCAAGGCTAAAAT--ATTACTTTTCA
*
21030108 TTAA-TTTTAACCCAATTTG-AAAATAAATTTTTATTTTGTAAAATTAATTAATCTCATTAATTA
1 TTAATTTTTAAACCAATTTGAAAAAT-AA-TTTTATTTTGTAAAATTAATTAATCTCATTAATTA
*
21030171 ATA-TAAAAATAAAAATTAATTTTCAATCTAAGGCTA
64 ATACT-AAAAT-AAAA-TAATTTTCAATCCAAGGCTA
21030207 GAATTTCCCT
Statistics
Matches: 86, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
112 5 0.06
113 17 0.20
114 43 0.50
115 4 0.05
116 17 0.20
ACGTcount: A:0.44, C:0.09, G:0.04, T:0.43
Consensus pattern (112 bp):
TTAATTTTTAAACCAATTTGAAAAATAATTTTATTTTGTAAAATTAATTAATCTCATTAATTAAT
ACTAAAATAAAATAATTTTCAATCCAAGGCTAAAATATTACTTTTCA
Found at i:21031804 original size:30 final size:31
Alignment explanation
Indices: 21031728--21031810 Score: 93
Period size: 30 Copynumber: 2.7 Consensus size: 31
21031718 TTAAAACTCC
*
21031728 TTTTAATTTAATTAATTA-AATTAAATTAATA
1 TTTT-ATTTATTTAATTATAATTAAATTAATA
*
21031759 -CTT-TTTATCTATAATTATAATTAAA-TAATA
1 TTTTATTTAT-T-TAATTATAATTAAATTAATA
21031789 TTTTATTTATTTAATTATAATT
1 TTTTATTTATTTAATTATAATT
21031811 GTGAGTCCAT
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
28 4 0.09
29 1 0.02
30 24 0.55
31 10 0.23
32 5 0.11
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.55
Consensus pattern (31 bp):
TTTTATTTATTTAATTATAATTAAATTAATA
Found at i:21033627 original size:26 final size:26
Alignment explanation
Indices: 21033567--21033628 Score: 106
Period size: 26 Copynumber: 2.4 Consensus size: 26
21033557 ACCATATACC
*
21033567 CATCATCAACATGCACACCATCCCAT
1 CATCATCATCATGCACACCATCCCAT
*
21033593 CATCATCATCATGCACATCATCCCAT
1 CATCATCATCATGCACACCATCCCAT
21033619 CATCATCATC
1 CATCATCATC
21033629 TCATATGCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.32, C:0.40, G:0.03, T:0.24
Consensus pattern (26 bp):
CATCATCATCATGCACACCATCCCAT
Found at i:21033921 original size:42 final size:42
Alignment explanation
Indices: 21033863--21033985 Score: 210
Period size: 42 Copynumber: 2.9 Consensus size: 42
21033853 ATGGGGGCAA
* *
21033863 CAACGGCTTATGTGCACTCCCACTCACACATAGCCGGGTCAG
1 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTCAG
* *
21033905 CAACGGCTTATATGCACTCCTACTCGCACATAGTCGGGTCAG
1 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTCAG
21033947 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGT
1 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGT
21033986 TCAAATCAAC
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 75 1.00
ACGTcount: A:0.23, C:0.33, G:0.22, T:0.22
Consensus pattern (42 bp):
CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTCAG
Done.