Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41236440
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2030548 characters in sequence are not A, C, G, or T
File 58 of 106
Found at i:21817605 original size:171 final size:168
Alignment explanation
Indices: 21817306--21817851 Score: 673
Period size: 171 Copynumber: 3.2 Consensus size: 168
21817296 TTTAGGGCCT
* * * *
21817306 TTAAAGTCAATAATAAGATTATAAAACCATTTAAAACGAGTAATAGGGCTTT-TAAAGGCATGAG
1 TTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCT-AAGGCATGAG
* * *
21817370 TGACTATAAATGGACTTTTCTTCTCAATCGATGGCTTTCGCTTAACGTT-TTCTATGGAAAACAT
65 TGACTATAAATGGACTTTTCTTCT-TATCGATGGCTTTCGCTTCACGTTCTT-GA-GGAAAACAT
*** * *
21817434 TCACCCATAATCTGTTTTAACAAAAAATGTAAAAAAATTCAAC
127 TCAATTATAACCT-TTTTAACCAAAAATGTAAAAAAATTCAAC
* *
21817477 TTAAAATCAATAATGAGATTATAAAACTATTTAAAGCAAGTAATAAGGCTTTCTAAGGCATGAGT
1 TTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCTAAGGCATGAGT
* *
21817542 GACTATAAATGGACTTTTCTTGCTTATGGATGGCTTTCGCTTCACGGTTCTTGAGGTAAACATTC
66 GACTATAAATGGACTTTTCTT-CTTATCGATGGCTTTCGCTTCAC-GTTCTTGAGGAAAACATTC
* *
21817607 AATTATAACCTTTCTTAACCAAAACTGTAAAAAAACTCAAC
129 AATTATAACCTTT-TTAACCAAAAATGTAAAAAAATTCAAC
* * * * *
21817648 TTCAAGTCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGT
1 TTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCTAAGGCATGAGT
** * * ** ** *
21817713 GGTTATAAATAGACTTTTCTTATTAATCGATGGCTTTTACTTCATATTTCTTGAGGCAAACATTC
66 GACTATAAATGGACTTTTCTTCTT-ATCGATGGCTTTCGCTTCA-CGTTCTTGAGGAAAACATTC
*
21817778 AATTATAACCTATTTTAACCAAAAATGTAAGAAAATTCAAC
129 AATTATAACCT-TTTTAACCAAAAATGTAAAAAAATTCAAC
*
21817819 TTAAAATCAATAATGAGATTATAAGACCATTTA
1 TTAAAATCAATAATGAGATTATAAAACCATTTA
21817852 TAGTCCATTT
Statistics
Matches: 325, Mismatches: 42, Indels: 16
0.85 0.11 0.04
Matches are distributed among these distances:
170 4 0.01
171 310 0.95
172 9 0.03
173 2 0.01
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.33
Consensus pattern (168 bp):
TTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCTAAGGCATGAGT
GACTATAAATGGACTTTTCTTCTTATCGATGGCTTTCGCTTCACGTTCTTGAGGAAAACATTCAA
TTATAACCTTTTTAACCAAAAATGTAAAAAAATTCAAC
Found at i:21817947 original size:37 final size:37
Alignment explanation
Indices: 21817906--21818027 Score: 113
Period size: 37 Copynumber: 3.1 Consensus size: 37
21817896 ATATATGCCA
21817906 TGTGCACGATGTGGGGGGAGCACATGATGGCATTAAT
1 TGTGCACGATGTGGGGGGAGCACATGATGGCATTAAT
* *
21817943 TGTGCGCGATGTGGGGGTGAACACGATGAT-G-ATGATATAT
1 TGTGCACGATGTGGGGG-GAGCAC-ATGATGGCAT--TA-AT
* *
21817983 GCCATGTGCACAATGTGGGGGGAGCACATGATGGCATTAGT
1 ----TGTGCACGATGTGGGGGGAGCACATGATGGCATTAAT
21818024 TGTG
1 TGTG
21818028 GGTGATGTAG
Statistics
Matches: 68, Mismatches: 6, Indels: 22
0.71 0.06 0.23
Matches are distributed among these distances:
37 22 0.32
38 6 0.09
39 7 0.10
40 2 0.03
41 1 0.01
42 7 0.10
43 6 0.09
44 17 0.25
ACGTcount: A:0.24, C:0.13, G:0.38, T:0.25
Consensus pattern (37 bp):
TGTGCACGATGTGGGGGGAGCACATGATGGCATTAAT
Found at i:21817999 original size:81 final size:81
Alignment explanation
Indices: 21817864--21818052 Score: 306
Period size: 81 Copynumber: 2.3 Consensus size: 81
21817854 GTCCATTTAT
* *
21817864 TGCGCGATGTAGGGGTGCACACGACGATAATGATATATGCCATGTGCACGATGTGGGGGGAGCAC
1 TGCGCGATGTAGGGGTGCACACGATGATAATGATATATGCCATGTGCACAATGTGGGGGGAGCAC
21817929 ATGATGGCATTAATTG
66 ATGATGGCATTAATTG
* * *
21817945 TGCGCGATGTGGGGGTGAACACGATGATGATGATATATGCCATGTGCACAATGTGGGGGGAGCAC
1 TGCGCGATGTAGGGGTGCACACGATGATAATGATATATGCCATGTGCACAATGTGGGGGGAGCAC
*
21818010 ATGATGGCATTAGTTG
66 ATGATGGCATTAATTG
* *
21818026 TGGGTGATGTAGGGGTGCACACGATGA
1 TGCGCGATGTAGGGGTGCACACGATGA
21818053 CTCCGGCTAT
Statistics
Matches: 98, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 98 1.00
ACGTcount: A:0.25, C:0.14, G:0.37, T:0.24
Consensus pattern (81 bp):
TGCGCGATGTAGGGGTGCACACGATGATAATGATATATGCCATGTGCACAATGTGGGGGGAGCAC
ATGATGGCATTAATTG
Found at i:21823491 original size:42 final size:43
Alignment explanation
Indices: 21823432--21823578 Score: 165
Period size: 42 Copynumber: 3.5 Consensus size: 43
21823422 GTGGACTCGG
* *
21823432 CTATGTGCAAGTA-GGAGTGCACATAAGCCGTTGTTGACCCGA
1 CTATGTGCGAGTAGGGAGTGCACATAAGCCGTTGATGACCCGA
* * * ** *
21823474 CTATGTGCGAGT-GGGAGTGAACATAAGCCATTGCTGACTTGG
1 CTATGTGCGAGTAGGGAGTGCACATAAGCCGTTGATGACCCGA
* *
21823516 CTATGTGCGAGTAGGGAGTGCGCATAACCCGATT-ATGACCCGA
1 CTATGTGCGAGTAGGGAGTGCACATAAGCCG-TTGATGACCCGA
*
21823559 TTATGTGCGAGTAGGGAGTG
1 CTATGTGCGAGTAGGGAGTG
21823579 TGCATAACCC
Statistics
Matches: 86, Mismatches: 16, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
42 46 0.53
43 38 0.44
44 2 0.02
ACGTcount: A:0.24, C:0.18, G:0.33, T:0.24
Consensus pattern (43 bp):
CTATGTGCGAGTAGGGAGTGCACATAAGCCGTTGATGACCCGA
Found at i:21823564 original size:43 final size:44
Alignment explanation
Indices: 21823432--21823592 Score: 170
Period size: 43 Copynumber: 3.8 Consensus size: 44
21823422 GTGGACTCGG
* * *
21823432 CTATGTGCAAGTA-GGAGTGCACATAAGCCG-TTGTTGACCCGA
1 CTATGTGCGAGTAGGGAGTGCACATAACCCGATTGATGACCCGA
* * * ** *
21823474 CTATGTGCGAGT-GGGAGTGAACATAAGCC-ATTGCTGACTTGG
1 CTATGTGCGAGTAGGGAGTGCACATAACCCGATTGATGACCCGA
*
21823516 CTATGTGCGAGTAGGGAGTGCGCATAACCCGATT-ATGACCCGA
1 CTATGTGCGAGTAGGGAGTGCACATAACCCGATTGATGACCCGA
* **
21823559 TTATGTGCGAGTAGGGAGTGTGCATAACCCGATT
1 CTATGTGCGAGTAGGGAGTGCACATAACCCGATT
21823593 ATGTGCGAGT
Statistics
Matches: 100, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
42 46 0.46
43 51 0.51
44 3 0.03
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (44 bp):
CTATGTGCGAGTAGGGAGTGCACATAACCCGATTGATGACCCGA
Found at i:21823660 original size:26 final size:26
Alignment explanation
Indices: 21823625--21823681 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
21823615 GGAGTTGGGA
* *
21823625 ATGATGATGATGGGATGGTGTGCATG
1 ATGATAATGATGGGATAGTGTGCATG
21823651 ATGATAATGATGGGATAGTGTGCATG
1 ATGATAATGATGGGATAGTGTGCATG
21823677 ATGAT
1 ATGAT
21823682 GATGGGTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.28, C:0.04, G:0.37, T:0.32
Consensus pattern (26 bp):
ATGATAATGATGGGATAGTGTGCATG
Found at i:21826924 original size:37 final size:37
Alignment explanation
Indices: 21826883--21827026 Score: 202
Period size: 37 Copynumber: 3.9 Consensus size: 37
21826873 CATATGCATT
*
21826883 CATCATCATGTTTGCACTCCATACTCGCACACT-TAAA
1 CATCATCATGTGTGCACTCCATACTCGCACACTCT-AA
* * *
21826920 CATCATCATGTGTGTAGTCCTTACTCGCACACTCTAA
1 CATCATCATGTGTGCACTCCATACTCGCACACTCTAA
*
21826957 CATCATCATGTGTGCACTCCTTACTCGCACACTCTAA
1 CATCATCATGTGTGCACTCCATACTCGCACACTCTAA
*
21826994 CATCATAATGTGTGCACT-CACTACTCGCACACT
1 CATCATCATGTGTGCACTCCA-TACTCGCACACT
21827027 TCAATATCCT
Statistics
Matches: 97, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
36 1 0.01
37 95 0.98
38 1 0.01
ACGTcount: A:0.26, C:0.33, G:0.11, T:0.30
Consensus pattern (37 bp):
CATCATCATGTGTGCACTCCATACTCGCACACTCTAA
Found at i:21844749 original size:171 final size:171
Alignment explanation
Indices: 21844341--21846009 Score: 1819
Period size: 171 Copynumber: 9.8 Consensus size: 171
21844331 TTCCCAAGGT
** * * * *
21844341 AAACATTCCATTATAATCTATTTTAACCAAAAATGTAA-AAACATTAAACCTAAAATCAATAATT
1 AAACATTTAATTATAATCTATTTTAACAAAAAATGTAAGAAA-ATTCAACTTAAAATCAATAATG
* * * * *
21844405 AAATTATAAAATCATTTAAAGTGAGTAATAAGGCTTTCAAAGGCATGACT-AGCTATAAATGGAC
65 AGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGA-CTATAAATGGAC
* *
21844469 -TTTCTTGTCAATCGATGG-TTGTCGCTTCACGTTTCTTGAGGC
129 TTTTCTTGTCAATGGATGGCTT-TCGCTTCACGTTTCTCGAGGC
* * *
21844511 AAACATTCAATTATAATC-AGTTTTAACCAAAAATGTAAGAAAATTCAACATAAAATCAATAATG
1 AAACATTTAATTATAATCTA-TTTTAACAAAAAATGTAAGAAAATTCAACTTAAAATCAATAATG
* *
21844575 AGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGAGTGATTATAAATGGACT
65 AGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * *
21844640 TTTCTTGTCAATTGATGGCTTTCGCTACATGTTTCTCGAGGC
130 TTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGAGGC
* ** * * *
21844682 AAACATTTAATTATAAACT-TTCTTAACTGAAAATGTAAGCAAATTCAACTTCAAATCAATTATG
1 AAACATTTAATTATAATCTATT-TTAACAAAAAATGTAAGAAAATTCAACTTAAAATCAATAATG
* * * * * *
21844746 AGATTATAAAACCATTTTAAGTGAGTAATAAGGCTTTTGAAAGCACGAATGACTATAAATGGACT
65 AGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * ** * * * * * * * *
21844811 TTTCCTATTGACGGAGGGTTTTAGCCTCACGTTTCCCAAGGT
130 TTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGAGGC
* * *
21844853 AAACATTTAATTATAATTTGTTTTAAC-AAAAATGTAA-AAATATTCAACTTAAAATCAATAATC
1 AAACATTTAATTATAATCTATTTTAACAAAAAATGTAAGAAA-ATTCAACTTAAAATCAATAATG
** * * *
21844916 ATCTTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGACTGGCTATAAATGGACT
65 AGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * * *
21844981 TTTCTTATCGATCGATGGCTTTTGCTTCATGTTTCTCGAGGC
130 TTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGAGGC
* * * *
21845023 AAACATTCAATTATAACCTTTTTTAACAAAAAATGTAAGAAAATTCAACTTAAAATCAATAATGG
1 AAACATTTAATTATAATCTATTTTAACAAAAAATGTAAGAAAATTCAACTTAAAATCAATAATGA
* * *
21845088 GATTATAAAAGCATTTAAACCGAGTAATAAGGCTTTTC-TAGGCATGAGTGACTATAAATGGACT
66 GATTATAAAACCATTTAAAGCGAGTAATAAGGC-TTTCGAAGGCATGAGTGACTATAAATGGACT
** ** * * * * * * * *
21845152 TTTC-TGTTGACAGAGGGTTTTAGCCTCTCGCTTGC-CAAGGT
130 TTTCTTGTCAATGGATGGCTTTCGCTTCACG-TTTCTCGAGGC
* * * *
21845193 AAACATTCAATTATAATCTGTTTTAA-AAAAAATGTAAAAAAATTCAACTTAAAATCAATCATGA
1 AAACATTTAATTATAATCTATTTTAACAAAAAATGTAAGAAAATTCAACTTAAAATCAATAATGA
* * * * *
21845257 GGTTATAAAACTATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATGGGTGACTATAAATAGACTT
66 GATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * *
21845322 TTCTTGTCAATGGATGGCTTTCACTTCACGTTT-TTGAAGGT
131 TTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCG-AGGC
* *
21845363 AAACATTCAATTATAATCTATTTTAACAAAAAATGTAA-AACAATTCAGCTTAAAATCAATAATC
1 AAACATTTAATTATAATCTATTTTAACAAAAAATGTAAGAA-AATTCAACTTAAAATCAATAAT-
* * * * * * ** *
21845427 G-TATCATAAAACCATTTAAAGCAAATGATAAAGAGTTCGAAGGCATTAGTGACTATAAATGGAC
64 GAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGAC
21845491 TTTTCTTGTCAATGGATGGCTTAT-GCTTCACGTTTC-CTGAGGC
129 TTTTCTTGTCAATGGATGGCTT-TCGCTTCACGTTTCTC-GAGGC
* * * * * *
21845534 AAAAATTTAATTATAATCTATTTTAACATAAAATGTAAAAAAATTCAGCTTAAAATTAATAATCA
1 AAACATTTAATTATAATCTATTTTAACAAAAAATGTAAGAAAATTCAACTTAAAATCAATAATGA
* * * *
21845599 GATTATAAAACCATTTAAAACGAGTAATAAGGCTTTCAAAAGCATGATTGACTATAAATGGACTT
66 GATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * * * * *
21845664 TTCTTGTCAATGGATGCCTTTTGCTTTAGGTTTCCCGAGGT
131 TTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGAGGC
* * * * * * *
21845705 AAACATTTAATTATACTCTCTTTTAACCAAAATTGTAAAAAAATTCAACATAAAATAAATAATGA
1 AAACATTTAATTATAATCTATTTTAACAAAAAATGTAAGAAAATTCAACTTAAAATCAATAATGA
* * * *
21845770 GATTATAAAATCATTTAATGTGAGTAATAAGGCTTTCGAAGGCATGAGTGA-TAATAAATGGAGT
66 GATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACT-ATAAATGGACT
** * *
21845834 TTTCTTGTCAATCAATGGC-TTCACTTCACGTTTCTCGAGAC
130 TTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGAGGC
* * **
21845875 AAACATTTAATTATAGTCTGTTTTAACAAAAAATGTAAGAAAATTCAACACAAAATCAATAATGA
1 AAACATTTAATTATAATCTATTTTAACAAAAAATGTAAGAAAATTCAACTTAAAATCAATAATGA
* * * * *
21845940 GATTATAAAACCATTTAAAGTGAGTAATAAGGTTTTCGAAGGAATGAGTGACTGTAAATGGTCTT
66 GATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
21846005 TTCTT
131 TTCTT
21846010 CTNNNNNNNN
Statistics
Matches: 1263, Mismatches: 207, Indels: 58
0.83 0.14 0.04
Matches are distributed among these distances:
168 4 0.00
169 96 0.08
170 476 0.38
171 670 0.53
172 17 0.01
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (171 bp):
AAACATTTAATTATAATCTATTTTAACAAAAAATGTAAGAAAATTCAACTTAAAATCAATAATGA
GATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
TTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGAGGC
Found at i:21844975 original size:341 final size:339
Alignment explanation
Indices: 21844341--21846009 Score: 1857
Period size: 341 Copynumber: 4.9 Consensus size: 339
21844331 TTCCCAAGGT
* * * * *
21844341 AAACATTCCATTATAATCTATTTTAACCAAAAATGTAA-AAACATTAAACCTAAAATCAATAATT
1 AAACATTCAATTATAATCTATTTTAACAAAAAATGTAAGAAA-ATTCAACTTAAAATCAATAATG
* * ** *
21844405 AAATTATAAAATCATTTAAAGTGAGTAATAAGGCTTTCAAAGGCATGACT-AGCTATAAATGGAC
65 AGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGCATGAGTGA-CTATAAATGGAC
* * ** * *
21844469 -TTTCTTGTCAATCGATGGTTGTCGCTTCACGTTTCTTGAGGCAAACATTCAATTATAATCAGTT
129 TTTTCTTGTCAA-CGATGGTTTTAGCTTCACGTTTCCCGAGGCAAACATTTAATTATAATCTGTT
*
21844533 TTAACCAAAAATGTAAGAAAATTCAACATAAAATCAATAATGAGATTATAAAACCATTTAAAGCG
193 TTAA-CAAAAATGTAA-AAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCG
* * *
21844598 AGTAATAAGGCTTTTGAAGGCATGAGTGATTATAAATGGACTTTTCTTGTCAATTGATGGCTTTC
256 AGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTC
*
21844663 GCTACATGTTTCTCGAGGC
321 GCTTCATGTTTCTCGAGGC
* * ** * * *
21844682 AAACATTTAATTATAAACT-TTCTTAACTGAAAATGTAAGCAAATTCAACTTCAAATCAATTATG
1 AAACATTCAATTATAATCTATT-TTAACAAAAAATGTAAGAAAATTCAACTTAAAATCAATAATG
* * * *
21844746 AGATTATAAAACCATTTTAAGTGAGTAATAAGGCTTTTGAAAGCACGAATGACTATAAATGGACT
65 AGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGCATGAGTGACTATAAATGGACT
* * ** * * * * *
21844811 TTTCCTATTGACGGAGGGTTTTAGCCTCACGTTTCCCAAGGTAAACATTTAATTATAATTTGTTT
130 TTTCTTGTCAAC-GATGGTTTTAGCTTCACGTTTCCCGAGGCAAACATTTAATTATAATCTGTTT
* ** *
21844876 TAACAAAAATGTAAAAATATTCAACTTAAAATCAATAATCATCTTATAAAACCATTTAAAGTGAG
194 TAACAAAAATGTAAAAA-ATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAG
* * * * * *
21844941 TAATAAGGCTTTCGAAGGCATGACTGGCTATAAATGGACTTTTCTTATCGATCGATGGCTTTTGC
258 TAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGC
21845006 TTCATGTTTCTCGAGGC
323 TTCATGTTTCTCGAGGC
* * *
21845023 AAACATTCAATTATAACCTTTTTTAACAAAAAATGTAAGAAAATTCAACTTAAAATCAATAATGG
1 AAACATTCAATTATAATCTATTTTAACAAAAAATGTAAGAAAATTCAACTTAAAATCAATAATGA
* ** **
21845088 GATTATAAAAGCATTTAAACCGAGTAATAAGGCTTTTCTAGGCATGAGTGACTATAAATGGACTT
66 GATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTT
** * * * * * * * *
21845153 TTC-TGTTGACAGAGGGTTTTAGCCTCTCGCTTGCCAAGGTAAACATTCAATTATAATCTGTTTT
131 TTCTTGTCAAC-GATGGTTTTAGCTTCACGTTTCCCGAGGCAAACATTTAATTATAATCTGTTTT
* * * *
21845217 AAAAAAAATGTAAAAAAATTCAACTTAAAATCAATCATGAGGTTATAAAACTATTTAAAGCGAGT
195 AACAAAAATGT-AAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGT
* * * *
21845282 AATAAGGCTTTCAAAGGCATGGGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCACT
259 AATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCT
* * *
21845347 TCACGTTT-TTGAAGGT
324 TCATGTTTCTCG-AGGC
*
21845363 AAACATTCAATTATAATCTATTTTAACAAAAAATGTAA-AACAATTCAGCTTAAAATCAATAATC
1 AAACATTCAATTATAATCTATTTTAACAAAAAATGTAAGAA-AATTCAACTTAAAATCAATAAT-
* * ** * * * ** * *
21845427 G-TATCATAAAACCATTTAAAGCAAATGATAAAGAGTTCGAAGGCATTAGTGACTATAAATGGAC
64 GAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGCATGAGTGACTATAAATGGAC
* * * * *
21845491 TTTTCTTGTCAATGGATGG-CTTATGCTTCACGTTTCCTGAGGCAAAAATTTAATTATAATCTAT
129 TTTTCTTGTCAA-CGATGGTTTTA-GCTTCACGTTTCCCGAGGCAAACATTTAATTATAATCTGT
* * * *
21845555 TTTAACATAAAATGTAAAAAAATTCAGCTTAAAATTAATAATCAGATTATAAAACCATTTAAAAC
192 TTTAACA-AAAATGT-AAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGC
* * * *
21845620 GAGTAATAAGGCTTTCAAAAGCATGATTGACTATAAATGGACTTTTCTTGTCAATGGATGCCTTT
255 GAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTT
* * * * *
21845685 TGCTTTAGGTTTCCCGAGGT
320 CGCTTCATGTTTCTCGAGGC
* * * * * * * *
21845705 AAACATTTAATTATACTCTCTTTTAACCAAAATTGTAAAAAAATTCAACATAAAATAAATAATGA
1 AAACATTCAATTATAATCTATTTTAACAAAAAATGTAAGAAAATTCAACTTAAAATCAATAATGA
* * * *
21845770 GATTATAAAATCATTTAATGTGAGTAATAAGGCTTTCGAAGGCATGAGTGA-TAATAAATGGAGT
66 GATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGCATGAGTGACT-ATAAATGGACT
* * * * * *
21845834 TTTCTTGTCAATCAATGGCTTCA-CTTCACGTTTCTCGAGACAAACATTTAATTATAGTCTGTTT
130 TTTCTTGTCAA-CGATGGTTTTAGCTTCACGTTTCCCGAGGCAAACATTTAATTATAATCTGTTT
** *
21845898 TAACAAAAAATGTAAGAAAATTCAACACAAAATCAATAATGAGATTATAAAACCATTTAAAGTGA
194 TAAC-AAAAATGTAA-AAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGA
* * * *
21845963 GTAATAAGGTTTTCGAAGGAATGAGTGACTGTAAATGGTCTTTTCTT
257 GTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTT
21846010 CTNNNNNNNN
Statistics
Matches: 1118, Mismatches: 188, Indels: 44
0.83 0.14 0.03
Matches are distributed among these distances:
339 4 0.00
340 292 0.26
341 521 0.47
342 296 0.26
343 5 0.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (339 bp):
AAACATTCAATTATAATCTATTTTAACAAAAAATGTAAGAAAATTCAACTTAAAATCAATAATGA
GATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTT
TTCTTGTCAACGATGGTTTTAGCTTCACGTTTCCCGAGGCAAACATTTAATTATAATCTGTTTTA
ACAAAAATGTAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAA
TAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTC
ATGTTTCTCGAGGC
Found at i:21845967 original size:852 final size:852
Alignment explanation
Indices: 21844318--21846008 Score: 2226
Period size: 852 Copynumber: 2.0 Consensus size: 852
21844308 GGTCGTGACA
* * * * *
21844318 TTTAGCCTCTTGTTTCCCAAGGTAAACATTCCATTATAATCTATTTTAACCAAAAATGTAAAAAC
1 TTTAGCCTCTCGCTTCCCAAGGTAAACATTCAATTATAATCTATTTTAACAAAAAATGTAAAAAA
* *
21844383 ATTAAACCTAAAATCAATAATTAAATTATAAAATCATTTAAAGTGAGTAATAAGGCTTTCAAAGG
66 ATTAAACCTAAAATCAATAATGAAATTATAAAATCATTTAAAGCGAGTAATAAGGCTTTCAAAGG
* *
21844448 CATGACTAGCTATAAATGGACTTTCTTGTCAATCGATGGTTGTCGCTTCACGTTTCTTGAGGCAA
131 CATGACTAGCTATAAATAGACTTTCTTGTCAATCGATGGTTGTCACTTCACGTTTCTTGAGGCAA
*
21844513 ACATTCAATTATAATCAGTTTTAACCAAAAATGTAAGAAAATTCAACATAAAATCAATAATGAGA
196 ACATTCAATTATAATCAGTTTTAACAAAAAATGTAAGAAAATTCAACATAAAATCAATAATGAGA
* * * * ** * *
21844578 TTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGAGTGATTATAAATGGACTTTT
261 TCATAAAACCATTTAAAGCAAATAATAAAGAGTTCGAAGGCATGAGTGACTATAAATGGACTTTT
* * *
21844643 CTTGTCAATTGATGGCTTTCGCTACATGTTTCTCGAGGCAAACATTTAATTATAAACTTTCTTAA
326 CTTGTCAATGGATGGCTTTCGCTACACGTTTCTCGAGGCAAAAATTTAATTATAAACTTTCTTAA
** * * * * **
21844708 CTGAAAATGTAAGCAAATTCAACTTCAAATCAATTATGAGATTATAAAACCATTTTAAGTGAGTA
391 CTGAAAATGTAAAAAAATTCAACTTAAAATCAATAATCAGATTATAAAACCATTTAAAACGAGTA
** ** **
21844773 ATAAGGCTTTTGAAAGCACGAATGACTATAAATGGACTTTTCCTATTGACGGAGGGTTTTAGCCT
456 ATAAGGCTTTCAAAAGCACGAATGACTATAAATGGACTTTTCCTATCAACGGAGCCTTTTAGCCT
* * * *
21844838 CACGTTTCCCAAGGTAAACATTTAATTATAATTTGTTTTAACAAAAATGTAAAAATATTCAACTT
521 CACGTTTCCCAAGGTAAACATTTAATTATAATCTCTTTTAACAAAAATGTAAAAAAATTCAACAT
* **
21844903 AAAATCAATAATCATCTTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGACTGG
586 AAAATAAATAATCAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGACTGG
* * * ** * *
21844968 CTATAAATGGACTTTTCTTATCGATCGATGGCTTTTGCTTCATGTTTCTCGAGGCAAACATTCAA
651 ATATAAATGGACTTTTCTTATCAATCAATGGCTTTCACTTCACGTTTCTCGAGACAAACATTCAA
* ** *
21845033 TTATAACCTTTTTTAACAAAAAATGTAAGAAAATTCAACTTAAAATCAATAATGGGATTATAAAA
716 TTATAACCTGTTTTAACAAAAAATGTAAGAAAATTCAACACAAAATCAATAATGAGATTATAAAA
* * *
21845098 GCATTTAAACCGAGTAATAAGGCTTTTC-TAGGCATGAGTGACTATAAATGGACTTTTCTGTTGA
781 CCATTTAAACCGAGTAATAAGG-TTTTCGAAGGAATGAGTGACTATAAATGGACTTTTCTGTTGA
21845162 CAGAGGGT
845 CAGAGGGT
* *
21845170 TTTAGCCTCTCGCTTGCCAAGGTAAACATTCAATTATAATCTGTTTTAA-AAAAAATGTAAAAAA
1 TTTAGCCTCTCGCTTCCCAAGGTAAACATTCAATTATAATCTATTTTAACAAAAAATGTAAAAAA
* * * **
21845234 ATTCAACTTAAAATCAATCATGAGGTTATAAAA-CTATTTAAAGCGAGTAATAAGGCTTTCAAAG
66 ATTAAACCTAAAATCAATAATGAAATTATAAAATC-ATTTAAAGCGAGTAATAAGGCTTTCAAAG
** *
21845298 GCATGGGT-GACTATAAATAGACTTTTCTTGTCAATGGATGGCTT-TCACTTCACGTTT-TTGAA
130 GCATGACTAG-CTATAAATAGAC-TTTCTTGTCAATCGATGG-TTGTCACTTCACGTTTCTTG-A
* * *
21845360 GGTAAACATTCAATTATAATCTA-TTTTAACAAAAAATGTAA-AACAATTCAGCTTAAAATCAAT
191 GGCAAACATTCAATTATAATC-AGTTTTAACAAAAAATGTAAGAA-AATTCAACATAAAATCAAT
* * *
21845423 AATCG-TATCATAAAACCATTTAAAGCAAATGATAAAGAGTTCGAAGGCATTAGTGACTATAAAT
254 AAT-GAGATCATAAAACCATTTAAAGCAAATAATAAAGAGTTCGAAGGCATGAGTGACTATAAAT
*
21845487 GGACTTTTCTTGTCAATGGATGGCTTAT-GCTTCACGTTTC-CTGAGGCAAAAATTTAATTATAA
318 GGACTTTTCTTGTCAATGGATGGCTT-TCGCTACACGTTTCTC-GAGGCAAAAATTTAATTATAA
* * *
21845550 TCTATT-TTAACAT-AAAATGTAAAAAAATTCAGCTTAAAATTAATAATCAGATTATAAAACCAT
381 ACT-TTCTTAAC-TGAAAATGTAAAAAAATTCAACTTAAAATCAATAATCAGATTATAAAACCAT
* * * * *
21845613 TTAAAACGAGTAATAAGGCTTTCAAAAGCATGATTGACTATAAATGGACTTTTCTTGTCAATGGA
444 TTAAAACGAGTAATAAGGCTTTCAAAAGCACGAATGACTATAAATGGACTTTTCCTATCAACGGA
* * * * * *
21845678 TGCCTTTT-GCTTTAGGTTTCCCGAGGTAAACATTTAATTATACTCTCTTTTAACCAAAATTGTA
509 -GCCTTTTAGCCTCACGTTTCCCAAGGTAAACATTTAATTATAATCTCTTTTAA-CAAAAATGTA
* * *
21845742 AAAAAATTCAACATAAAATAAATAATGAGATTATAAAATCATTTAATGTGAGTAATAAGGCTTTC
572 AAAAAATTCAACATAAAATAAATAATCAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTC
* * *
21845807 GAAGGCATGAGT-GATAATAAATGGAGTTTTCTTGTCAATCAATGGC-TTCACTTCACGTTTCTC
637 GAAGGCATGACTGGAT-ATAAATGGACTTTTCTTATCAATCAATGGCTTTCACTTCACGTTTCTC
* **
21845870 GAGACAAACATTTAATTATAGTCTGTTTTAACAAAAAATGTAAGAAAATTCAACACAAAATCAAT
701 GAGACAAACATTCAATTATAACCTGTTTTAACAAAAAATGTAAGAAAATTCAACACAAAATCAAT
** *
21845935 AATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGTTTTCGAAGGAATGAGTGACTGTAAATG
766 AATGAGATTATAAAACCATTTAAACCGAGTAATAAGGTTTTCGAAGGAATGAGTGACTATAAATG
*
21846000 GTCTTTTCT
831 GACTTTTCT
21846009 TCTNNNNNNN
Statistics
Matches: 723, Mismatches: 100, Indels: 32
0.85 0.12 0.04
Matches are distributed among these distances:
850 2 0.00
851 96 0.13
852 509 0.70
853 116 0.16
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33
Consensus pattern (852 bp):
TTTAGCCTCTCGCTTCCCAAGGTAAACATTCAATTATAATCTATTTTAACAAAAAATGTAAAAAA
ATTAAACCTAAAATCAATAATGAAATTATAAAATCATTTAAAGCGAGTAATAAGGCTTTCAAAGG
CATGACTAGCTATAAATAGACTTTCTTGTCAATCGATGGTTGTCACTTCACGTTTCTTGAGGCAA
ACATTCAATTATAATCAGTTTTAACAAAAAATGTAAGAAAATTCAACATAAAATCAATAATGAGA
TCATAAAACCATTTAAAGCAAATAATAAAGAGTTCGAAGGCATGAGTGACTATAAATGGACTTTT
CTTGTCAATGGATGGCTTTCGCTACACGTTTCTCGAGGCAAAAATTTAATTATAAACTTTCTTAA
CTGAAAATGTAAAAAAATTCAACTTAAAATCAATAATCAGATTATAAAACCATTTAAAACGAGTA
ATAAGGCTTTCAAAAGCACGAATGACTATAAATGGACTTTTCCTATCAACGGAGCCTTTTAGCCT
CACGTTTCCCAAGGTAAACATTTAATTATAATCTCTTTTAACAAAAATGTAAAAAAATTCAACAT
AAAATAAATAATCAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGACTGG
ATATAAATGGACTTTTCTTATCAATCAATGGCTTTCACTTCACGTTTCTCGAGACAAACATTCAA
TTATAACCTGTTTTAACAAAAAATGTAAGAAAATTCAACACAAAATCAATAATGAGATTATAAAA
CCATTTAAACCGAGTAATAAGGTTTTCGAAGGAATGAGTGACTATAAATGGACTTTTCTGTTGAC
AGAGGGT
Found at i:21851558 original size:37 final size:37
Alignment explanation
Indices: 21851516--21851634 Score: 177
Period size: 37 Copynumber: 3.2 Consensus size: 37
21851506 TAATGTTGCG
21851516 TGATGATGTTGAAGTGTGCGAGTAGGGAGTGCACACA
1 TGATGATGTTGAAGTGTGCGAGTAGGGAGTGCACACA
* * *
21851553 TGATGATGTT-AGAGTGTACGAGTAAGGAGTGCAGACA
1 TGATGATGTTGA-AGTGTGCGAGTAGGGAGTGCACACA
* *
21851590 TGATGATGTTGAAGTGTGTGAGTAGGGAGTGAACACA
1 TGATGATGTTGAAGTGTGCGAGTAGGGAGTGCACACA
21851627 TGATGATG
1 TGATGATG
21851635 ATATTGCATT
Statistics
Matches: 72, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
36 1 0.01
37 70 0.97
38 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.37, T:0.26
Consensus pattern (37 bp):
TGATGATGTTGAAGTGTGCGAGTAGGGAGTGCACACA
Found at i:21851707 original size:2 final size:2
Alignment explanation
Indices: 21851702--21851740 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
21851692 TATATATATA
*
21851702 TG TG TG TG TG CG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
21851741 TATAGAAAGT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.03, G:0.49, T:0.49
Consensus pattern (2 bp):
TG
Found at i:21855087 original size:28 final size:28
Alignment explanation
Indices: 21854994--21855144 Score: 215
Period size: 28 Copynumber: 5.6 Consensus size: 28
21854984 AAACCTATTT
*
21854994 ATTTTTATTTTCT-GTTGGGCCATGCCC
1 ATTTTTATTTTCTATTTGGGCCATGCCC
* * *
21855021 A--CTTATTTTCTA-TTAGGTCATGCCC
1 ATTTTTATTTTCTATTTGGGCCATGCCC
*
21855046 A--TTTATTTTCTATTTGGGTCATGCCC
1 ATTTTTATTTTCTATTTGGGCCATGCCC
21855072 ATTTTTATTTTCTATTTGGGCCATGCCC
1 ATTTTTATTTTCTATTTGGGCCATGCCC
21855100 ATTTTTATTTTCTATTTGGGCCATGCCC
1 ATTTTTATTTTCTATTTGGGCCATGCCC
21855128 ATTTTTATTTTCTATTT
1 ATTTTTATTTTCTATTT
21855145 CTTTTCTTTT
Statistics
Matches: 114, Mismatches: 6, Indels: 7
0.90 0.05 0.06
Matches are distributed among these distances:
25 31 0.27
26 13 0.11
27 1 0.01
28 69 0.61
ACGTcount: A:0.15, C:0.20, G:0.13, T:0.52
Consensus pattern (28 bp):
ATTTTTATTTTCTATTTGGGCCATGCCC
Found at i:21855150 original size:5 final size:5
Alignment explanation
Indices: 21855130--21855174 Score: 56
Period size: 5 Copynumber: 8.8 Consensus size: 5
21855120 CCATGCCCAT
*
21855130 TTTTA TTTTC TATTTC TTTTC TTTTC TTTTC TTTT- TCTTTC TTTT
1 TTTTC TTTTC T-TTTC TTTTC TTTTC TTTTC TTTTC T-TTTC TTTT
21855175 TTCTCTCTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
4 1 0.03
5 29 0.81
6 6 0.17
ACGTcount: A:0.04, C:0.16, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTC
Found at i:21855154 original size:16 final size:16
Alignment explanation
Indices: 21855129--21855174 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
21855119 GCCATGCCCA
*
21855129 TTTTTATTTTCTATTTC
1 TTTTTCTTTTCT-TTTC
21855146 -TTTTCTTTTCTTTTC
1 TTTTTCTTTTCTTTTC
21855161 TTTTTC-TTTCTTTT
1 TTTTTCTTTTCTTTT
21855175 TTCTCTCTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
15 12 0.44
16 15 0.56
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.80
Consensus pattern (16 bp):
TTTTTCTTTTCTTTTC
Found at i:21855183 original size:15 final size:15
Alignment explanation
Indices: 21855136--21855185 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
21855126 CCATTTTTAT
21855136 TTTCTATTTCTTT-TC
1 TTTCT-TTTCTTTCTC
*
21855151 TTTTCTTTTCTTTTTC
1 -TTTCTTTTCTTTCTC
21855167 TTTCTTTT-TTCTCTC
1 TTTCTTTTCTT-TCTC
21855182 TTTC
1 TTTC
21855186 ACAGTCACTC
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
14 2 0.06
15 22 0.71
16 7 0.23
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTCTTTTCTTTCTC
Found at i:21855226 original size:22 final size:22
Alignment explanation
Indices: 21855198--21855244 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
21855188 AGTCACTCCA
21855198 TTCACCACCAT-GTCTTCCTCTC
1 TTCACCACCATGGT-TTCCTCTC
*
21855220 TTCACCACCGTGGTTTCCTCTC
1 TTCACCACCATGGTTTCCTCTC
21855242 TTC
1 TTC
21855245 CTTGGGTCGT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 21 0.91
23 2 0.09
ACGTcount: A:0.11, C:0.43, G:0.09, T:0.38
Consensus pattern (22 bp):
TTCACCACCATGGTTTCCTCTC
Found at i:21855438 original size:24 final size:23
Alignment explanation
Indices: 21855381--21855501 Score: 170
Period size: 23 Copynumber: 5.2 Consensus size: 23
21855371 AAATTGGCAG
*
21855381 CAAACAGCTCCAATTTTTTTGCA
1 CAAACAGCTCCAATTTTTCTGCA
* *
21855404 TAAATAGCTCCAATTTTTCTGCA
1 CAAACAGCTCCAATTTTTCTGCA
* *
21855427 GCAAACAACTCCAATTTTTTTGCA
1 -CAAACAGCTCCAATTTTTCTGCA
21855451 CAAACAGCTCCAATTTTTCTGCA
1 CAAACAGCTCCAATTTTTCTGCA
*
21855474 GCAAACATCTCCAATTTTTCTGCA
1 -CAAACAGCTCCAATTTTTCTGCA
21855498 CAAA
1 CAAA
21855502 TTGGCAACAA
Statistics
Matches: 86, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
23 45 0.52
24 41 0.48
ACGTcount: A:0.32, C:0.26, G:0.08, T:0.33
Consensus pattern (23 bp):
CAAACAGCTCCAATTTTTCTGCA
Found at i:21855446 original size:47 final size:47
Alignment explanation
Indices: 21855377--21855502 Score: 207
Period size: 47 Copynumber: 2.7 Consensus size: 47
21855367 GCACAAATTG
* *
21855377 GCAGCAAACAGCTCCAATTTTTTTGCATAAATAGCTCCAATTTTTCT
1 GCAGCAAACAACTCCAATTTTTTTGCACAAATAGCTCCAATTTTTCT
*
21855424 GCAGCAAACAACTCCAATTTTTTTGCACAAACAGCTCCAATTTTTCT
1 GCAGCAAACAACTCCAATTTTTTTGCACAAATAGCTCCAATTTTTCT
* *
21855471 GCAGCAAACATCTCCAATTTTTCTGCACAAAT
1 GCAGCAAACAACTCCAATTTTTTTGCACAAAT
21855503 TGGCAACAAA
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.32, C:0.26, G:0.10, T:0.33
Consensus pattern (47 bp):
GCAGCAAACAACTCCAATTTTTTTGCACAAATAGCTCCAATTTTTCT
Found at i:21859351 original size:22 final size:22
Alignment explanation
Indices: 21859321--21859389 Score: 68
Period size: 22 Copynumber: 3.0 Consensus size: 22
21859311 CTCACCATTT
*
21859321 TTTTTCTTCCTTTCTTTCTTTC
1 TTTTCCTTCCTTTCTTTCTTTC
*
21859343 TTTTCCTTCCTCTCTTT-TTCTC
1 TTTTCCTTCCTTTCTTTCTT-TC
* *
21859365 TCTTTCTTCTCCTTTTTTTCTTTC
1 T-TTTCCT-TCCTTTCTTTCTTTC
21859389 T
1 T
21859390 CTAGTCGTCG
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
21 2 0.05
22 18 0.47
23 5 0.13
24 11 0.29
25 2 0.05
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (22 bp):
TTTTCCTTCCTTTCTTTCTTTC
Found at i:21859386 original size:28 final size:28
Alignment explanation
Indices: 21859319--21859387 Score: 75
Period size: 28 Copynumber: 2.4 Consensus size: 28
21859309 AGCTCACCAT
* *
21859319 TTTTTTTCTTCCTTTCTTTCTTTCTTTTCC
1 TTTTTTTCTT--TTTCTCTCTTTCTTCTCC
** *
21859349 TTCCTCTCTTTTTCTCTCTTTCTTCTCC
1 TTTTTTTCTTTTTCTCTCTTTCTTCTCC
21859377 TTTTTTTCTTT
1 TTTTTTTCTTT
21859388 CTCTAGTCGT
Statistics
Matches: 31, Mismatches: 8, Indels: 2
0.76 0.20 0.05
Matches are distributed among these distances:
28 24 0.77
30 7 0.23
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (28 bp):
TTTTTTTCTTTTTCTCTCTTTCTTCTCC
Found at i:21859717 original size:36 final size:36
Alignment explanation
Indices: 21859677--21859753 Score: 100
Period size: 36 Copynumber: 2.1 Consensus size: 36
21859667 TCTTCTCTAT
* *
21859677 TTCTCCCCTCAAGATTGGCTGCAACCACCAAAGAAA
1 TTCTCCCCTCAAAATCGGCTGCAACCACCAAAGAAA
* * *
21859713 TTCTCTCCTTAAAATCGGCTGCAACCACCCAAGAAA
1 TTCTCCCCTCAAAATCGGCTGCAACCACCAAAGAAA
*
21859749 ATCTC
1 TTCTC
21859754 ATTTGCTCAC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.32, C:0.34, G:0.12, T:0.22
Consensus pattern (36 bp):
TTCTCCCCTCAAAATCGGCTGCAACCACCAAAGAAA
Found at i:21860024 original size:47 final size:47
Alignment explanation
Indices: 21859966--21860105 Score: 210
Period size: 47 Copynumber: 3.0 Consensus size: 47
21859956 TTTTTTTTTA
* * *
21859966 TTTC-TCTTCTTCCTTTATTGTTTCATTCGGCCAACCCCTACCGTCC
1 TTTCTTCTTCTTCCTTTATTGTTTCATTTGGCCAGCCCCTACCATCC
* * *
21860012 TTTCTTCTTCTTCTTTTATTGTTTCATTTGGCCGGCCCTTACCATCC
1 TTTCTTCTTCTTCCTTTATTGTTTCATTTGGCCAGCCCCTACCATCC
*
21860059 TTTCTTCTTCTTCCTTTATTGTTCCATTTGGCCAGCCCCTACCATCC
1 TTTCTTCTTCTTCCTTTATTGTTTCATTTGGCCAGCCCCTACCATCC
21860106 ATTCACAAAG
Statistics
Matches: 83, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
46 4 0.05
47 79 0.95
ACGTcount: A:0.10, C:0.34, G:0.09, T:0.46
Consensus pattern (47 bp):
TTTCTTCTTCTTCCTTTATTGTTTCATTTGGCCAGCCCCTACCATCC
Found at i:21860201 original size:11 final size:11
Alignment explanation
Indices: 21860185--21860237 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 11
21860175 CATTCTTTCT
21860185 TTATTTTATTA
1 TTATTTTATTA
21860196 TTA-TTTA-T-
1 TTATTTTATTA
21860204 TTA-TTTATTA
1 TTATTTTATTA
21860214 TTATTATTATATA
1 TTATT-TTAT-TA
21860227 TTTATTTTATT
1 -TTATTTTATT
21860238 TAACTTCAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
8 7 0.19
9 2 0.06
10 7 0.19
11 4 0.11
12 5 0.14
13 6 0.17
14 5 0.14
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TTATTTTATTA
Found at i:21860222 original size:24 final size:23
Alignment explanation
Indices: 21860184--21860238 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 23
21860174 CCATTCTTTC
*
21860184 TTTATTTTATTATTATTTATTTA
1 TTTATTTTATTATTATATATTTA
21860207 TTTATTATTATTATTATATATTTA
1 TTTATT-TTATTATTATATATTTA
21860231 TTTTATTT
1 -TTTATTT
21860239 AACTTCAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
23 6 0.21
24 17 0.59
25 6 0.21
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (23 bp):
TTTATTTTATTATTATATATTTA
Found at i:21860642 original size:18 final size:19
Alignment explanation
Indices: 21860595--21860642 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
21860585 TTAATATTTT
21860595 AATATTATTTTATTTATAA
1 AATATTATTTTATTTATAA
*
21860614 AATAATATTTTATTT-TAA
1 AATATTATTTTATTTATAA
*
21860632 AATATTCTTTT
1 AATATTATTTT
21860643 CGCCCGTAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 12 0.46
19 14 0.54
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (19 bp):
AATATTATTTTATTTATAA
Found at i:21863320 original size:42 final size:42
Alignment explanation
Indices: 21863273--21863385 Score: 156
Period size: 42 Copynumber: 2.7 Consensus size: 42
21863263 ATCTCATATG
* *
21863273 CAATGGCTTATGTGCACTCCCACTCGTAGATAGCCT-GGTCAA
1 CAATGGCTTATGTGCACTCCCACTCGCACATAG-CTGGGTCAA
* * *
21863315 CAATGGCTTATGTGCACTCTCATTCGCACATAGCTGGGTCAG
1 CAATGGCTTATGTGCACTCCCACTCGCACATAGCTGGGTCAA
*
21863357 CAATGGCTTATGTGCACTCCTACTCGCAC
1 CAATGGCTTATGTGCACTCCCACTCGCAC
21863386 GTAACCGGGT
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
41 2 0.03
42 60 0.97
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.27
Consensus pattern (42 bp):
CAATGGCTTATGTGCACTCCCACTCGCACATAGCTGGGTCAA
Found at i:21868434 original size:2 final size:2
Alignment explanation
Indices: 21868427--21868467 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
21868417 TTGAAAGTTT
21868427 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
21868468 AAGAAAGAGG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:21869136 original size:43 final size:43
Alignment explanation
Indices: 21869088--21869223 Score: 166
Period size: 43 Copynumber: 3.2 Consensus size: 43
21869078 TTGTGTGATA
* * * *
21869088 ATGATGACCTAGTTATGTGCGATGT-GGGAGTGCACATGAGTTG
1 ATGATGACCCAGCTATGTGCGA-GTAGGGAGTGCACATAAGCTG
* ***
21869131 ATGATGACCCGGCTATGTGCGAGTAGGGAGTATGCATAAGCTG
1 ATGATGACCCAGCTATGTGCGAGTAGGGAGTGCACATAAGCTG
* *
21869174 ATGATGACCCAGCTATGTACGAGTAGGGAGTGCACATAAGCCG
1 ATGATGACCCAGCTATGTGCGAGTAGGGAGTGCACATAAGCTG
21869217 ATGATGA
1 ATGATGA
21869224 TGACCTGGCT
Statistics
Matches: 78, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
42 2 0.03
43 76 0.97
ACGTcount: A:0.27, C:0.15, G:0.33, T:0.24
Consensus pattern (43 bp):
ATGATGACCCAGCTATGTGCGAGTAGGGAGTGCACATAAGCTG
Found at i:21872122 original size:32 final size:32
Alignment explanation
Indices: 21872061--21872123 Score: 81
Period size: 32 Copynumber: 2.0 Consensus size: 32
21872051 ATCATTAGTT
*** **
21872061 TATATTTGAACATTGGATTTTTTTTTTAAAAG
1 TATATTTGAACATTGGATTAACTAGTTAAAAG
21872093 TATATTTGAACATTGGATTAACTAGTTAAAA
1 TATATTTGAACATTGGATTAACTAGTTAAAA
21872124 CGCTAGCTTA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.37, C:0.05, G:0.13, T:0.46
Consensus pattern (32 bp):
TATATTTGAACATTGGATTAACTAGTTAAAAG
Found at i:21872810 original size:2 final size:2
Alignment explanation
Indices: 21872803--21872874 Score: 90
Period size: 2 Copynumber: 35.0 Consensus size: 2
21872793 TTACATCGAG
* * *
21872803 TA TA TA TA TA TA TA TA TA TA TA TA TA TA NTC TA TC GA GTA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA -TA TA TA
*
21872847 TA TA TA TA TA TA TA TA TA TA TA CA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
21872875 AAAGACTTTT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
2 58 0.97
3 2 0.03
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.46
Consensus pattern (2 bp):
TA
Found at i:21873785 original size:36 final size:36
Alignment explanation
Indices: 21873731--21873815 Score: 100
Period size: 36 Copynumber: 2.4 Consensus size: 36
21873721 CATGTCCACT
* * *
21873731 CCCACATCGCACATAGCTAGA-GTCATCGTGTGCACC
1 CCCACATCGCGCACAGCTA-ATGCCATCGTGTGCACC
* *
21873767 CCCACATCGCGCACAGCTAATGCCATTGTGTGCTCC
1 CCCACATCGCGCACAGCTAATGCCATCGTGTGCACC
*
21873803 CCTACATCGCGCA
1 CCCACATCGCGCA
21873816 TAGGCAATAT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
35 1 0.02
36 41 0.98
ACGTcount: A:0.22, C:0.39, G:0.19, T:0.20
Consensus pattern (36 bp):
CCCACATCGCGCACAGCTAATGCCATCGTGTGCACC
Found at i:21881027 original size:35 final size:34
Alignment explanation
Indices: 21880959--21881064 Score: 122
Period size: 35 Copynumber: 3.1 Consensus size: 34
21880949 CACTCAACCA
* * *
21880959 ATGTGCACTCCCTACACGCACAAGCCAACATCATC
1 ATGTGCACTCCCTACTCACACAAG-CAATATCATC
* * **
21880994 ATGTTCACTCCCTACTCATACATTTCAATATCATC
1 ATGTGCACTCCCTACTCACACA-AGCAATATCATC
*
21881029 GTGTGCACTCCCTACTCACACAAGCAATATCATC
1 ATGTGCACTCCCTACTCACACAAGCAATATCATC
21881063 AT
1 AT
21881065 CCACAATTCC
Statistics
Matches: 57, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
34 11 0.19
35 46 0.81
ACGTcount: A:0.30, C:0.35, G:0.08, T:0.26
Consensus pattern (34 bp):
ATGTGCACTCCCTACTCACACAAGCAATATCATC
Found at i:21895402 original size:26 final size:26
Alignment explanation
Indices: 21895373--21895431 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
21895363 ATTTTCTAGT
* *
21895373 TTTCCTTTGT-TTTTCTCTTTTCTTCC
1 TTTCCTTTCTATTTTCTCTCTTCTT-C
* *
21895399 TTTCCTCTCTATTTTCTCTCTTGTTC
1 TTTCCTTTCTATTTTCTCTCTTCTTC
21895425 TTTCCTT
1 TTTCCTT
21895432 CTGGCCGGCC
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
26 15 0.56
27 12 0.44
ACGTcount: A:0.02, C:0.29, G:0.03, T:0.66
Consensus pattern (26 bp):
TTTCCTTTCTATTTTCTCTCTTCTTC
Found at i:21917582 original size:43 final size:43
Alignment explanation
Indices: 21917521--21917612 Score: 166
Period size: 43 Copynumber: 2.1 Consensus size: 43
21917511 TTTTGTGTGA
*
21917521 TAATGATGACCCAGCTATGTGTGGTGTAGGAGTGCACATGAGC
1 TAATGATGACCCAGCTATGTGCGGTGTAGGAGTGCACATGAGC
21917564 TAATGATGACCCAGCTATGTGCGGTGTAGGAGTGCACATGAGC
1 TAATGATGACCCAGCTATGTGCGGTGTAGGAGTGCACATGAGC
*
21917607 TGATGA
1 TAATGA
21917613 GATGGGAGTT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (43 bp):
TAATGATGACCCAGCTATGTGCGGTGTAGGAGTGCACATGAGC
Found at i:21925576 original size:13 final size:14
Alignment explanation
Indices: 21925548--21925577 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
21925538 TCCCTACGGG
21925548 TGCCTAAACAAGGA
1 TGCCTAAACAAGGA
21925562 TGCCTAAAC-AGGA
1 TGCCTAAACAAGGA
21925575 TGC
1 TGC
21925578 TTTTGGGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.44
14 9 0.56
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (14 bp):
TGCCTAAACAAGGA
Found at i:21926420 original size:35 final size:35
Alignment explanation
Indices: 21926186--21926432 Score: 239
Period size: 35 Copynumber: 7.1 Consensus size: 35
21926176 ATTAGGTTGT
** * * * *
21926186 GCCTAATTAACAAAATTGTTTAATTAAATCATTGT
1 GCCTAATTAATTAAATTATTTAATTAAGTTATTGG
*
21926221 GCCTAATTAATTAAATTATTTAATTAAGTCATTGG
1 GCCTAATTAATTAAATTATTTAATTAAGTTATTGG
***
21926256 GCCTAATTAATTAAATTAAACAATTAAGTTATTGG
1 GCCTAATTAATTAAATTATTTAATTAAGTTATTGG
* * * *
21926291 GCCTAATTGATTAAATTTGTTTATTTAAGTCATTGG
1 GCCTAATTAATTAAA-TTATTTAATTAAGTTATTGG
* * * *
21926327 GCCTAATTGATTAAAATTGTTTCA--AA-TTGTTGG
1 GCCTAATTAATT-AAATTATTTAATTAAGTTATTGG
*
21926360 GCTTAATTAATTAAATTATTTAATTAAGTTATTGG
1 GCCTAATTAATTAAATTATTTAATTAAGTTATTGG
* ***
21926395 GCCTAATTGATTAAATTAAACAATTAAGTTAATTGG
1 GCCTAATTAATTAAATTATTTAATTAAGTT-ATTGG
21926431 GC
1 GC
21926433 TTCTAAAGGA
Statistics
Matches: 176, Mismatches: 30, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
32 9 0.05
33 15 0.09
34 4 0.02
35 106 0.60
36 39 0.22
37 3 0.02
ACGTcount: A:0.36, C:0.09, G:0.13, T:0.42
Consensus pattern (35 bp):
GCCTAATTAATTAAATTATTTAATTAAGTTATTGG
Found at i:21932793 original size:35 final size:35
Alignment explanation
Indices: 21932744--21932971 Score: 294
Period size: 35 Copynumber: 6.5 Consensus size: 35
21932734 TTAAGTTCTA
* * *
21932744 CCTAATTAACTAAATTGTTTAATTAAATCATTAGG
1 CCTAATTAATTAAATTGTTTAATTAAGTCATTGGG
*
21932779 CCTAATTAATTAAATTGTTTAATTAACTCATTGGG
1 CCTAATTAATTAAATTGTTTAATTAAGTCATTGGG
*
21932814 CCTAATTAATTAAATTGTTTAATTAAGTTATTGGG
1 CCTAATTAATTAAATTGTTTAATTAAGTCATTGGG
* *
21932849 CCTAATTGATTAAATTTGTTTAATTAAGTCAGTGGG
1 CCTAATTAATTAAA-TTGTTTAATTAAGTCATTGGG
* * * * **
21932885 CCTAGTTGATTAAAATTATTTAATTAAATTGTTGGG
1 CCTAATTAATT-AAATTGTTTAATTAAGTCATTGGG
* *
21932921 CTTAATTAATTAAATTGTTTAATTAAGTTATTGGG
1 CCTAATTAATTAAATTGTTTAATTAAGTCATTGGG
*
21932956 CCTAATTGATTAAATT
1 CCTAATTAATTAAATT
21932972 AAACAATTAA
Statistics
Matches: 169, Mismatches: 22, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
35 113 0.67
36 53 0.31
37 3 0.02
ACGTcount: A:0.35, C:0.08, G:0.14, T:0.44
Consensus pattern (35 bp):
CCTAATTAATTAAATTGTTTAATTAAGTCATTGGG
Found at i:21932927 original size:107 final size:106
Alignment explanation
Indices: 21932744--21932971 Score: 332
Period size: 107 Copynumber: 2.2 Consensus size: 106
21932734 TTAAGTTCTA
* * * * *
21932744 CCTAATTAACTAAA-TTGTTTAATTAAATCATTAGGCCTAATTAATTAAATTGTTTAATTAACTC
1 CCTAATTGATTAAATTTGTTTAATTAAATCAGTAGGCCTAATTAATTAAATTATTTAATTAAATC
21932808 ATTGGGCCTAATTAATTAAATTGTTTAATTAAGTTATTGGG
66 ATTGGGCCTAATTAATTAAATTGTTTAATTAAGTTATTGGG
* * * *
21932849 CCTAATTGATTAAATTTGTTTAATTAAGTCAGTGGGCCTAGTTGATTAAAATTATTTAATTAAAT
1 CCTAATTGATTAAATTTGTTTAATTAAATCAGTAGGCCTAATTAATT-AAATTATTTAATTAAAT
** *
21932914 TGTTGGGCTTAATTAATTAAATTGTTTAATTAAGTTATTGGG
65 CATTGGGCCTAATTAATTAAATTGTTTAATTAAGTTATTGGG
21932956 CCTAATTGATTAAATT
1 CCTAATTGATTAAATT
21932972 AAACAATTAA
Statistics
Matches: 109, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
105 12 0.11
106 27 0.25
107 70 0.64
ACGTcount: A:0.35, C:0.08, G:0.14, T:0.44
Consensus pattern (106 bp):
CCTAATTGATTAAATTTGTTTAATTAAATCAGTAGGCCTAATTAATTAAATTATTTAATTAAATC
ATTGGGCCTAATTAATTAAATTGTTTAATTAAGTTATTGGG
Found at i:21934913 original size:2 final size:2
Alignment explanation
Indices: 21934906--21934934 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
21934896 ATTGTGTTGG
21934906 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
21934935 GTTGTGCATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:21935629 original size:43 final size:43
Alignment explanation
Indices: 21935568--21935656 Score: 169
Period size: 43 Copynumber: 2.1 Consensus size: 43
21935558 TATCTTTCTA
21935568 ATGCTCCAAAACTCAAGTCAATTGGACTTCTGTAGCGGGAGAT
1 ATGCTCCAAAACTCAAGTCAATTGGACTTCTGTAGCGGGAGAT
*
21935611 ATGCTCCAAAACTCAAGTCAATTGGACTTTTGTAGCGGGAGAT
1 ATGCTCCAAAACTCAAGTCAATTGGACTTCTGTAGCGGGAGAT
21935654 ATG
1 ATG
21935657 ATAGAACAAC
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (43 bp):
ATGCTCCAAAACTCAAGTCAATTGGACTTCTGTAGCGGGAGAT
Found at i:21942755 original size:2 final size:2
Alignment explanation
Indices: 21942748--21942776 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
21942738 NNNNNNNNNN
21942748 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
21942777 GTTGTGCATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:21947612 original size:29 final size:30
Alignment explanation
Indices: 21947554--21947613 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
21947544 TTTTTGAAAT
*
21947554 TTACACTTTTGCCCCAATAAAAGTCAAAAA
1 TTACACTTTTGCCCCAATAAAAGTAAAAAA
* **
21947584 TTACATTTTTGCCCCAA-AAACTTAAAAAA
1 TTACACTTTTGCCCCAATAAAAGTAAAAAA
21947613 T
1 T
21947614 GCCCATAGAC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 10 0.38
30 16 0.62
ACGTcount: A:0.43, C:0.22, G:0.05, T:0.30
Consensus pattern (30 bp):
TTACACTTTTGCCCCAATAAAAGTAAAAAA
Found at i:21949918 original size:43 final size:44
Alignment explanation
Indices: 21949838--21949948 Score: 122
Period size: 43 Copynumber: 2.6 Consensus size: 44
21949828 ATTGACTCGG
*
21949838 TTATGTGCAAGTAGGGAGTGCACATAAGCCGAGGATGACCC-GA
1 TTATGTGCAAGTAGGGAGTGCGCATAAGCCGAGGATGACCCAGA
* *
21949881 TTATGTGCGAGTAGGGAGTGCGCATAA-CC-AGGTGATGACCCAGC
1 TTATGTGCAAGTAGGGAGTGCGCATAAGCCGA-G-GATGACCCAGA
* * *
21949925 CT-TGTGCTAGTAGGGAGTACGCAT
1 TTATGTGCAAGTAGGGAGTGCGCAT
21949949 GAGCTGCTGA
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
41 1 0.02
42 3 0.05
43 53 0.90
44 2 0.03
ACGTcount: A:0.26, C:0.19, G:0.33, T:0.22
Consensus pattern (44 bp):
TTATGTGCAAGTAGGGAGTGCGCATAAGCCGAGGATGACCCAGA
Found at i:21956689 original size:11 final size:11
Alignment explanation
Indices: 21956673--21956711 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
21956663 TTTCTCTCTT
21956673 TTTCTTTCTCC
1 TTTCTTTCTCC
21956684 TTTCTTTCT--
1 TTTCTTTCTCC
*
21956693 TTCCTTTCTCC
1 TTTCTTTCTCC
21956704 TTTCTTTC
1 TTTCTTTC
21956712 AACTGATCTC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
9 8 0.33
11 16 0.67
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (11 bp):
TTTCTTTCTCC
Found at i:21960380 original size:39 final size:39
Alignment explanation
Indices: 21960290--21960427 Score: 151
Period size: 39 Copynumber: 3.6 Consensus size: 39
21960280 TCAACTCAGC
* * * * *
21960290 TCATGTGCACTCCTACACCTCACATAGC-TA-AT-ATCC
1 TCATGTGCTCTCCCACACCGCACATGGCATATATCATCA
21960326 TCATGTGCAT-TCCCACACCGCACATGGCATATATCATCA
1 TCATGTGC-TCTCCCACACCGCACATGGCATATATCATCA
*
21960365 TCATGTGCTCTCCCACACAGCACATGGCATATATCATCGA
1 TCATGTGCTCTCCCACACCGCACATGGCATATATCATC-A
* *
21960405 -CGTGTGCTCTCCCACACTGCACA
1 TCATGTGCTCTCCCACACCGCACA
21960428 CTACCGGTAC
Statistics
Matches: 88, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
36 23 0.26
37 2 0.02
38 3 0.03
39 59 0.67
40 1 0.01
ACGTcount: A:0.26, C:0.36, G:0.13, T:0.25
Consensus pattern (39 bp):
TCATGTGCTCTCCCACACCGCACATGGCATATATCATCA
Found at i:21961583 original size:7 final size:8
Alignment explanation
Indices: 21961569--21961601 Score: 52
Period size: 7 Copynumber: 4.4 Consensus size: 8
21961559 CTAGCTTTTC
21961569 TCTTCCTT
1 TCTTCCTT
21961577 T-TTCCTT
1 TCTTCCTT
21961584 TCTT-CTT
1 TCTTCCTT
21961591 TCTTCCTT
1 TCTTCCTT
21961599 TCT
1 TCT
21961602 CTCTCTTAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
7 14 0.61
8 9 0.39
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (8 bp):
TCTTCCTT
Found at i:21961596 original size:15 final size:15
Alignment explanation
Indices: 21961569--21961601 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
21961559 CTAGCTTTTC
21961569 TCTTCCTTTTTCCTT
1 TCTTCCTTTTTCCTT
21961584 TCTT-CTTTCTTCCTT
1 TCTTCCTTT-TTCCTT
21961599 TCT
1 TCT
21961602 CTCTCTTAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (15 bp):
TCTTCCTTTTTCCTT
Found at i:21963788 original size:2 final size:2
Alignment explanation
Indices: 21963781--21963866 Score: 70
Period size: 2 Copynumber: 42.0 Consensus size: 2
21963771 TACCCCTATC
* * *
21963781 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T NCT -T CT ACT ACC
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT A-T A-T
*
21963824 CT ACT ACT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT A-T A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
21963867 CCTTATTGCA
Statistics
Matches: 73, Mismatches: 5, Indels: 12
0.81 0.06 0.13
Matches are distributed among these distances:
1 3 0.04
2 61 0.84
3 9 0.12
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:21973869 original size:38 final size:39
Alignment explanation
Indices: 21973821--21973920 Score: 157
Period size: 38 Copynumber: 2.6 Consensus size: 39
21973811 AATACCCTCA
* *
21973821 TGTGCACTCCCACATCACACATGGCATATATCATCA-TC
1 TGTGCTCTCCCACATCGCACATGGCATATATCATCAGTC
* *
21973859 TGTGCTCTCCCACACCGCACATGGCATATATCATCAGTG
1 TGTGCTCTCCCACATCGCACATGGCATATATCATCAGTC
21973898 TGTGCTCTCCCACATCGCACATG
1 TGTGCTCTCCCACATCGCACATG
21973921 ATCGACACCG
Statistics
Matches: 56, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
38 33 0.59
39 23 0.41
ACGTcount: A:0.24, C:0.35, G:0.15, T:0.26
Consensus pattern (39 bp):
TGTGCTCTCCCACATCGCACATGGCATATATCATCAGTC
Found at i:21978879 original size:10 final size:10
Alignment explanation
Indices: 21978864--21978890 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
21978854 TTTCTATCAC
21978864 ATAAACATAT
1 ATAAACATAT
21978874 ATAAACATAT
1 ATAAACATAT
21978884 ATAAACA
1 ATAAACA
21978891 CGTACACCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.63, C:0.11, G:0.00, T:0.26
Consensus pattern (10 bp):
ATAAACATAT
Found at i:21978995 original size:43 final size:43
Alignment explanation
Indices: 21978931--21979110 Score: 265
Period size: 43 Copynumber: 4.2 Consensus size: 43
21978921 AGCCGAGTCA
* * *
21978931 TCATCATCGATTTATGTGCACTCCCTACTCGCACATAGCCGGG
1 TCATCATCGACTTATGCGCACTCCCTACTCGCACATAGCTGGG
*
21978974 TCATCATCGGCTTATGCGCACTCCCTACTCGCACATAGCTGGG
1 TCATCATCGACTTATGCGCACTCCCTACTCGCACATAGCTGGG
*
21979017 TCATCATCGACTTATGCGCACTCCCTACTCACACATAGCTGGG
1 TCATCATCGACTTATGCGCACTCCCTACTCGCACATAGCTGGG
* *
21979060 TCATCATC-AGCTCATGTGCACTCCC-ACATCGCACATAGCTGGG
1 TCATCATCGA-CTTATGCGCACTCCCTAC-TCGCACATAGCTGGG
21979103 TCATCATC
1 TCATCATC
21979111 ATCACACAAC
Statistics
Matches: 126, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
42 3 0.02
43 123 0.98
ACGTcount: A:0.22, C:0.34, G:0.18, T:0.26
Consensus pattern (43 bp):
TCATCATCGACTTATGCGCACTCCCTACTCGCACATAGCTGGG
Found at i:21981932 original size:26 final size:26
Alignment explanation
Indices: 21981903--21981961 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
21981893 ATTTTCTAGT
* *
21981903 TTTCCTTTGT-TTTTCTCTTTTCTTCC
1 TTTCCTTTCTATTTTCTCTCTTCTT-C
* *
21981929 TTTCCTCTCTATTTTCTCTCTTGTTC
1 TTTCCTTTCTATTTTCTCTCTTCTTC
21981955 TTTCCTT
1 TTTCCTT
21981962 ATGGCCGGCC
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
26 15 0.56
27 12 0.44
ACGTcount: A:0.02, C:0.29, G:0.03, T:0.66
Consensus pattern (26 bp):
TTTCCTTTCTATTTTCTCTCTTCTTC
Found at i:21982944 original size:19 final size:20
Alignment explanation
Indices: 21982922--21982962 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
21982912 ATAAGAGGAA
21982922 ATTTTTA-GAATAAAATAAT
1 ATTTTTATGAATAAAATAAT
*
21982941 A-TTTTATTAATAAAATAAT
1 ATTTTTATGAATAAAATAAT
21982960 ATT
1 ATT
21982963 AAAACATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
18 5 0.26
19 13 0.68
20 1 0.05
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.46
Consensus pattern (20 bp):
ATTTTTATGAATAAAATAAT
Found at i:21983345 original size:20 final size:20
Alignment explanation
Indices: 21983300--21983349 Score: 50
Period size: 20 Copynumber: 2.6 Consensus size: 20
21983290 AAATGAAAGA
*
21983300 AATAAAATAA-ACAAATAGT
1 AATATAATAATACAAATAGT
* * *
21983319 AAAATAATAATACAAGTATT
1 AATATAATAATACAAATAGT
21983339 AATATAA-AATA
1 AATATAATAATA
21983350 AATAAAGACC
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
19 12 0.48
20 13 0.52
ACGTcount: A:0.66, C:0.04, G:0.04, T:0.26
Consensus pattern (20 bp):
AATATAATAATACAAATAGT
Found at i:21983823 original size:35 final size:35
Alignment explanation
Indices: 21983772--21983849 Score: 120
Period size: 35 Copynumber: 2.2 Consensus size: 35
21983762 AGAAGAGATG
* *
21983772 TTTTAGCTACTGATTTTGAAAGCTGAAAGGTACTA
1 TTTTGGCTACTGATTTTGAAAGCTGAAAGGTACGA
* *
21983807 TTTTGGCTACTGATTTTGAAGGCTGAAAGGTGCGA
1 TTTTGGCTACTGATTTTGAAAGCTGAAAGGTACGA
21983842 TTTTGGCT
1 TTTTGGCT
21983850 GTTGATCTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.24, C:0.12, G:0.26, T:0.38
Consensus pattern (35 bp):
TTTTGGCTACTGATTTTGAAAGCTGAAAGGTACGA
Found at i:21983921 original size:35 final size:34
Alignment explanation
Indices: 21983878--21983983 Score: 124
Period size: 34 Copynumber: 3.1 Consensus size: 34
21983868 GGCTGTCAAG
* *
21983878 TTTTGAGGGAGGAA-GGAACAGCTTGGCTGCTGAT
1 TTTTGAGGGA-GAATAGAGCAGCTTGGCTGCTGAT
* * *
21983912 TTTTAGAGGGAGAATTGAGTAGCTTAGCTGCTGAT
1 TTTT-GAGGGAGAATAGAGCAGCTTGGCTGCTGAT
* *
21983947 TTTTGAGGAAAAATAGAGCAGCTTGGCTGCTGAT
1 TTTTGAGGGAGAATAGAGCAGCTTGGCTGCTGAT
21983981 TTT
1 TTT
21983984 GATGTTGATA
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
34 35 0.57
35 26 0.43
ACGTcount: A:0.25, C:0.10, G:0.32, T:0.32
Consensus pattern (34 bp):
TTTTGAGGGAGAATAGAGCAGCTTGGCTGCTGAT
Found at i:21984210 original size:5 final size:5
Alignment explanation
Indices: 21984150--21984208 Score: 73
Period size: 5 Copynumber: 11.2 Consensus size: 5
21984140 AGGAGAGAGG
*
21984150 AGAAA GAGAAA GAGAGAA AGAAA AGAAA AGAAA AGAAA GGAAA AGAAA
1 AGAAA -AGAAA -AGA-AA AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA
*
21984198 AGAAA ATAAA A
1 AGAAA AGAAA A
21984209 TATATATAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
5 35 0.71
6 12 0.24
7 2 0.04
ACGTcount: A:0.75, C:0.00, G:0.24, T:0.02
Consensus pattern (5 bp):
AGAAA
Found at i:22000215 original size:13 final size:13
Alignment explanation
Indices: 22000197--22000221 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22000187 AATATCTATA
22000197 ATTACATATTAAT
1 ATTACATATTAAT
22000210 ATTACATATTAA
1 ATTACATATTAA
22000222 ACTTTACTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
ATTACATATTAAT
Found at i:22001091 original size:22 final size:23
Alignment explanation
Indices: 22001046--22001109 Score: 60
Period size: 23 Copynumber: 2.7 Consensus size: 23
22001036 AATTCTCAAA
* * *
22001046 ACAAAATTATCATTAATTCTATC
1 ACAAAACTATCATCAATTCCATC
22001069 ACAAAACTATCA-CAATTCCATC
1 ACAAAACTATCATCAATTCCATC
22001091 ACTATAAA-TCATCATCAAT
1 AC-A-AAACT-ATCATCAAT
22001110 GACAGAAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
22 10 0.29
23 13 0.38
24 7 0.21
25 4 0.12
ACGTcount: A:0.45, C:0.23, G:0.00, T:0.31
Consensus pattern (23 bp):
ACAAAACTATCATCAATTCCATC
Found at i:22007187 original size:13 final size:14
Alignment explanation
Indices: 22007169--22007200 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
22007159 GCCTATTAAC
22007169 TTAATTAAAC-AAT
1 TTAATTAAACAAAT
22007182 TTAATTAAACAAAT
1 TTAATTAAACAAAT
22007196 TTAAT
1 TTAAT
22007201 CAATTAGGCC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (14 bp):
TTAATTAAACAAAT
Found at i:22007267 original size:35 final size:35
Alignment explanation
Indices: 22007182--22007334 Score: 177
Period size: 35 Copynumber: 4.4 Consensus size: 35
22007172 ATTAAACAAT
* *
22007182 TTAATTAAACAAATTTAATCAATTAGGCCCAATAAC
1 TTAATTAAAC-AATTTAATTAATTAGGCCCAATGAC
**** *
22007218 TTAATTGTTTAATTTAATTAATTAGGCCTAATGAC
1 TTAATTAAACAATTTAATTAATTAGGCCCAATGAC
* *
22007253 TTAATTAAACAATTTAATTAATTAAGCCCAATGAT
1 TTAATTAAACAATTTAATTAATTAGGCCCAATGAC
* *
22007288 TTATTTAAACAATTTAATTAATTAGGCAC-A--AC
1 TTAATTAAACAATTTAATTAATTAGGCCCAATGAC
22007320 TTAATTAAACAATTT
1 TTAATTAAACAATTT
22007335 TAATCAACTT
Statistics
Matches: 98, Mismatches: 19, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
32 15 0.15
34 1 0.01
35 76 0.78
36 6 0.06
ACGTcount: A:0.43, C:0.12, G:0.07, T:0.39
Consensus pattern (35 bp):
TTAATTAAACAATTTAATTAATTAGGCCCAATGAC
Found at i:22007282 original size:70 final size:67
Alignment explanation
Indices: 22007177--22007347 Score: 182
Period size: 70 Copynumber: 2.5 Consensus size: 67
22007167 ACTTAATTAA
* * ****
22007177 ACAATTTAATTAAACAAATTTAATCAATTAGGCCCAATAACTTAATTGTTTAATTTAATTAATTA
1 ACAACTTAATTAAAC-AATTTAATCAATTAAGCCCAATAACTTAATTAAACAATTTAATTAATTA
22007242 GGC
65 GGC
* * * *
22007245 -CTAATGACTTAATTAAACAATTTAATTAATTAAGCCCAATGATTTATTTAAACAATTTAATTAA
1 AC--A--ACTTAATTAAACAATTTAATCAATTAAGCCCAATAACTTAATTAAACAATTTAATTAA
22007309 TTAGGC
62 TTAGGC
22007315 ACAACTTAATTAAACAATTTTAATCAACTTAAG
1 ACAACTTAATTAAACAA-TTTAATCAA-TTAAG
22007348 TAAACAATTT
Statistics
Matches: 85, Mismatches: 11, Indels: 13
0.78 0.10 0.12
Matches are distributed among these distances:
67 15 0.18
68 8 0.09
69 7 0.08
70 43 0.51
71 12 0.14
ACGTcount: A:0.44, C:0.12, G:0.06, T:0.37
Consensus pattern (67 bp):
ACAACTTAATTAAACAATTTAATCAATTAAGCCCAATAACTTAATTAAACAATTTAATTAATTAG
GC
Found at i:22009700 original size:54 final size:54
Alignment explanation
Indices: 22009608--22009711 Score: 154
Period size: 54 Copynumber: 1.9 Consensus size: 54
22009598 CAATCATTCA
* * * * *
22009608 ATCTTACCCAGCTAATGTGCATCCCACTACATCGTGCACATAGTCGGACATCCC
1 ATCTCACCCAGCTAATATGCATCCCACCACATCATGCACATAGCCGGACATCCC
*
22009662 ATCTCACCCAGCTCATATGCATCCCACCACATCATGCACATAGCCGGACA
1 ATCTCACCCAGCTAATATGCATCCCACCACATCATGCACATAGCCGGACA
22009712 GTATCACCAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 44 1.00
ACGTcount: A:0.28, C:0.38, G:0.13, T:0.21
Consensus pattern (54 bp):
ATCTCACCCAGCTAATATGCATCCCACCACATCATGCACATAGCCGGACATCCC
Found at i:22015169 original size:43 final size:43
Alignment explanation
Indices: 22015108--22015270 Score: 213
Period size: 43 Copynumber: 3.8 Consensus size: 43
22015098 GATAATAATG
* *
22015108 ACCCAGCTATGTGTGATGTAGGTGTGCACATGAGATGATGATT
1 ACCCAGCTATGTGCGATGTAGGAGTGCACATGAGATGATGATT
* *
22015151 ACCCAGCTATGTGTGATGTAGGTGTGCACATGAGATGATGATT
1 ACCCAGCTATGTGCGATGTAGGAGTGCACATGAGATGATGATT
* * * * *
22015194 ACCCAGCTATGTGCGGTGTGGGAGTGCACATGAGCTCATGATG
1 ACCCAGCTATGTGCGATGTAGGAGTGCACATGAGATGATGATT
22015237 ACCC-GACTATGTGCGA-GTAGGGAGTGCACATGAG
1 ACCCAG-CTATGTGCGATGTA-GGAGTGCACATGAG
22015271 TTGAGTGTGG
Statistics
Matches: 109, Mismatches: 9, Indels: 4
0.89 0.07 0.03
Matches are distributed among these distances:
42 3 0.03
43 106 0.97
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.26
Consensus pattern (43 bp):
ACCCAGCTATGTGCGATGTAGGAGTGCACATGAGATGATGATT
Found at i:22020626 original size:79 final size:79
Alignment explanation
Indices: 22020531--22020688 Score: 262
Period size: 79 Copynumber: 2.0 Consensus size: 79
22020521 TAATTTGTCT
* * * * *
22020531 TCCTTACACTTTCTATCTTGCATTTATCAATAGATGCAAAACATCTATTGATAAATTATGCCTAG
1 TCCTTACACTTTCTATCTTGCATCTATCAATAAATGCAAAACATCTATCGATAAATTATGCCCAA
22020596 ATTTCAATTTTCAC
66 ATTTCAATTTTCAC
*
22020610 TCCTTACACTTTCTATCTTGCATCTATCAATAAATGCAAAACATCTATCGATAGATTATGCCCAA
1 TCCTTACACTTTCTATCTTGCATCTATCAATAAATGCAAAACATCTATCGATAAATTATGCCCAA
22020675 ATTTCAATTTTCAC
66 ATTTCAATTTTCAC
22020689 CTCTCTAATC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
79 73 1.00
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.39
Consensus pattern (79 bp):
TCCTTACACTTTCTATCTTGCATCTATCAATAAATGCAAAACATCTATCGATAAATTATGCCCAA
ATTTCAATTTTCAC
Found at i:22024191 original size:2 final size:2
Alignment explanation
Indices: 22024184--22024212 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
22024174 CATGCACAAC
22024184 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
22024213 CANATTATCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:22024257 original size:2 final size:2
Alignment explanation
Indices: 22024250--22024276 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
22024240 CATGCACAAC
22024250 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
22024277 CATACCAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:22025694 original size:22 final size:21
Alignment explanation
Indices: 22025647--22025694 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 21
22025637 CCCTAGGTGG
*
22025647 AAAAATTCAAGGGAAAAGTGT
1 AAAAATTCAAGGGAAAAGTGA
*
22025668 GAAAATTCAA-GGAACCAAGTGA
1 AAAAATTCAAGGGAA--AAGTGA
22025690 AAAAA
1 AAAAA
22025695 GGTAAGATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 4 0.18
21 9 0.41
22 9 0.41
ACGTcount: A:0.56, C:0.08, G:0.21, T:0.15
Consensus pattern (21 bp):
AAAAATTCAAGGGAAAAGTGA
Found at i:22027310 original size:35 final size:36
Alignment explanation
Indices: 22027231--22027315 Score: 127
Period size: 36 Copynumber: 2.4 Consensus size: 36
22027221 TCAACCTAGC
*
22027231 TCATGTGCACTCCCACACCGCACATAGCTAGAGTCA
1 TCATGTGCACTCCCACACCGCACATAGCAAGAGTCA
* * *
22027267 TCATGTGCACTCCCACATCGCACATGGCAATA-TCA
1 TCATGTGCACTCCCACACCGCACATAGCAAGAGTCA
22027302 TCATGTGCACTCCC
1 TCATGTGCACTCCC
22027316 GCTCTACATC
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
35 17 0.38
36 28 0.62
ACGTcount: A:0.26, C:0.36, G:0.15, T:0.22
Consensus pattern (36 bp):
TCATGTGCACTCCCACACCGCACATAGCAAGAGTCA
Found at i:22031254 original size:40 final size:38
Alignment explanation
Indices: 22031210--22031311 Score: 134
Period size: 40 Copynumber: 2.6 Consensus size: 38
22031200 CACACCCGGC
*
22031210 TCATGTACATCCCCCCACATCGTGAACATAGCCG-GCACCA
1 TCATGTACATCCCCCCACATCGTGAACA-AGCAGTG--CCA
* * *
22031250 TCATGTGCATCCCCCCACATCGTGCACAATCAGTGCCA
1 TCATGTACATCCCCCCACATCGTGAACAAGCAGTGCCA
22031288 TCATGTACATCCCCCCACATCGTG
1 TCATGTACATCCCCCCACATCGTG
22031312 CACACGGGCA
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
38 26 0.46
39 3 0.05
40 27 0.48
ACGTcount: A:0.25, C:0.40, G:0.15, T:0.21
Consensus pattern (38 bp):
TCATGTACATCCCCCCACATCGTGAACAAGCAGTGCCA
Found at i:22031299 original size:38 final size:39
Alignment explanation
Indices: 22031210--22031315 Score: 144
Period size: 38 Copynumber: 2.7 Consensus size: 39
22031200 CACACCCGGC
* *
22031210 TCATGTACATCCCCCCACATCGTGAACATAGCCGGCACCA
1 TCATGTACATCCCCCCACATCGTGCACATAGCAGG-ACCA
* *
22031250 TCATGTGCATCCCCCCACATCGTGCACA-ATCAGTG-CCA
1 TCATGTACATCCCCCCACATCGTGCACATAGCAG-GACCA
22031288 TCATGTACATCCCCCCACATCGTGCACA
1 TCATGTACATCCCCCCACATCGTGCACA
22031316 CGGGCACTAT
Statistics
Matches: 60, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
38 30 0.50
39 3 0.05
40 27 0.45
ACGTcount: A:0.25, C:0.41, G:0.14, T:0.20
Consensus pattern (39 bp):
TCATGTACATCCCCCCACATCGTGCACATAGCAGGACCA
Found at i:22036175 original size:20 final size:20
Alignment explanation
Indices: 22036150--22036187 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
22036140 AATTCATTAA
*
22036150 AAATGTATCGTTACATTCCT
1 AAATGTATCGATACATTCCT
22036170 AAATGTATCGATACATTC
1 AAATGTATCGATACATTC
22036188 ATGGGCAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.37
Consensus pattern (20 bp):
AAATGTATCGATACATTCCT
Found at i:22040804 original size:47 final size:48
Alignment explanation
Indices: 22040750--22040847 Score: 126
Period size: 47 Copynumber: 2.1 Consensus size: 48
22040740 GAAAGAAAAA
* * * *
22040750 AGAAGAAAAAGAAGAAGAAAGATAGAGGGGGAGCGGC-GTGCCGGAGG
1 AGAAGAAAAAGAAAAAGAAAGAAAAAGGGGGAGCGACGGTGCCGGAGG
* * *
22040797 AGAAGAAAAGGAAAAAGGAAGAAAAAGGGGGAGCGACGGTGTCGGAGG
1 AGAAGAAAAAGAAAAAGAAAGAAAAAGGGGGAGCGACGGTGCCGGAGG
22040845 AGA
1 AGA
22040848 CAGAGGAGAG
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
47 31 0.72
48 12 0.28
ACGTcount: A:0.45, C:0.07, G:0.44, T:0.04
Consensus pattern (48 bp):
AGAAGAAAAAGAAAAAGAAAGAAAAAGGGGGAGCGACGGTGCCGGAGG
Found at i:22041686 original size:60 final size:60
Alignment explanation
Indices: 22041616--22041797 Score: 226
Period size: 60 Copynumber: 3.0 Consensus size: 60
22041606 GATTTAAATT
* * * *
22041616 GTAAAGGGGGACTTGAAGCCCTGATTCATATTGAGTGACGTGGGCAGTTCCCACGAGGAG
1 GTAAAGGGGGACCTGAAGCCCTGATTTATATTGAGTGGCGTGGGCAGTTCCCACGAGTAG
* * * *
22041676 GTAAAAGGGGACCTGAAAACCC-AATTTATATT-AGGTGGCGTGGGCAGTTCCCGCGAGTAG
1 GTAAAGGGGGACCTG-AAGCCCTGATTTATATTGA-GTGGCGTGGGCAGTTCCCACGAGTAG
* *
22041736 GTAAAGGGGGACCTAAAGCCCTGATTTATATATGA-TGGCGTGGGCAGTTCCAACGAGTAG
1 GTAAAGGGGGACCTGAAGCCCTGATTTATAT-TGAGTGGCGTGGGCAGTTCCCACGAGTAG
22041796 GT
1 GT
22041798 GATGATGTCT
Statistics
Matches: 103, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
59 6 0.06
60 90 0.87
61 6 0.06
62 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.23
Consensus pattern (60 bp):
GTAAAGGGGGACCTGAAGCCCTGATTTATATTGAGTGGCGTGGGCAGTTCCCACGAGTAG
Found at i:22045133 original size:21 final size:21
Alignment explanation
Indices: 22045107--22045148 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
22045097 AAACAGAAGG
* *
22045107 TTTCTCGTTGCAGCGAAATTC
1 TTTCTCGCTACAGCGAAATTC
22045128 TTTCTCGCTACAGCGAAATTC
1 TTTCTCGCTACAGCGAAATTC
22045149 AGCTGATGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.21, C:0.26, G:0.17, T:0.36
Consensus pattern (21 bp):
TTTCTCGCTACAGCGAAATTC
Found at i:22045577 original size:42 final size:43
Alignment explanation
Indices: 22045526--22045635 Score: 138
Period size: 42 Copynumber: 2.6 Consensus size: 43
22045516 TCACCAGCTC
**
22045526 ATGCGCACTCCCTACTCGCACAT-GGCTGGGTCATCAC-CGGGC-T
1 ATGCGCACTCCCTACTCGCACATAATC-GGGTCATC-CTC-GGCTT
*
22045569 A-GCGCACTCCCTACTAGCACATAATCGGGTCATCCTCGGCTT
1 ATGCGCACTCCCTACTCGCACATAATCGGGTCATCCTCGGCTT
22045611 ATGCGCACTCCCTACTCGCACATAA
1 ATGCGCACTCCCTACTCGCACATAA
22045636 CCGAGTCAAT
Statistics
Matches: 59, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
41 4 0.07
42 31 0.53
43 24 0.41
ACGTcount: A:0.21, C:0.37, G:0.20, T:0.22
Consensus pattern (43 bp):
ATGCGCACTCCCTACTCGCACATAATCGGGTCATCCTCGGCTT
Found at i:22045626 original size:43 final size:44
Alignment explanation
Indices: 22045513--22045635 Score: 141
Period size: 43 Copynumber: 2.9 Consensus size: 44
22045503 CCCATCATCA
* *
22045513 TCATCACC-AGCTCATGCGCACTCCCTACTCGCACAT-GGCTGGG
1 TCATCACCGGGCT-ATGCGCACTCCCTACTCGCACATAAGCTGGG
* *
22045556 TCATCACCGGGCTA-GCGCACTCCCTACTAGCACATAATC-GGG
1 TCATCACCGGGCTATGCGCACTCCCTACTCGCACATAAGCTGGG
22045598 TCATC-CTC-GGCTTATGCGCACTCCCTACTCGCACATAA
1 TCATCAC-CGGGC-TATGCGCACTCCCTACTCGCACATAA
22045636 CCGAGTCAAT
Statistics
Matches: 70, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
41 4 0.06
42 31 0.44
43 32 0.46
44 3 0.04
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.22
Consensus pattern (44 bp):
TCATCACCGGGCTATGCGCACTCCCTACTCGCACATAAGCTGGG
Found at i:22049730 original size:42 final size:42
Alignment explanation
Indices: 22049667--22049750 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
22049657 GTAATGATAT
*
22049667 TGACCCGGCTATGTGCGAGTAGGAGTGCGCATAAGCCGTTGC
1 TGACCCGGCTATGTGCAAGTAGGAGTGCGCATAAGCCGTTGC
*
22049709 TGACCTGGCTATGTGCAAGTAGGAGTGCGCATAAGCCGTTGC
1 TGACCCGGCTATGTGCAAGTAGGAGTGCGCATAAGCCGTTGC
22049751 ATATGAGCTG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.20, C:0.23, G:0.35, T:0.23
Consensus pattern (42 bp):
TGACCCGGCTATGTGCAAGTAGGAGTGCGCATAAGCCGTTGC
Found at i:22050081 original size:21 final size:22
Alignment explanation
Indices: 22050038--22050081 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
22050028 GCCCTACTTT
*
22050038 TCGCTGCATCGAGAAAGCATTC
1 TCGCTGCAACGAGAAAGCATTC
22050060 TCGCTGCAACGAGAAA-CATTC
1 TCGCTGCAACGAGAAAGCATTC
22050081 T
1 T
22050082 GTTTTGGCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (22 bp):
TCGCTGCAACGAGAAAGCATTC
Found at i:22057943 original size:204 final size:204
Alignment explanation
Indices: 22057593--22058019 Score: 651
Period size: 204 Copynumber: 2.1 Consensus size: 204
22057583 TAAACCTAGA
* * * *
22057593 GCTCTGATACCACCTTTGTCACTAGGGGCGGGAGATCACGGGGCACCTTTTCCTCTTCGCTACGA
1 GCTCTGATACCACCTTTGTCACTAGGGGCGGGAGATCACAGAGCACCCTTTCCCCTTCGCTACGA
* ** *
22057658 CGGCAACAAATGGTACCTATCAAAGCACTCATAGGGTGGGAGATCACAAAGTACCCTCCCCTATA
66 CGGCAACAAATGGTACCTATCAAAACACTCATAGGGTGGGAGATCACAAACCACCCACCCCTATA
** *
22057723 AGCCCTTGGATGGAGAGTCATGCTTCGTCACTGTTCACATGC-AAGAGTTCCCAGGGATTAGG-T
131 AGCCCTTGGATGGAGAGTCATGCTTCACCACTATTCACATGCGAA-AGTTCCCAGGGA-TAGGAT
22057786 TACAACCCTTT
194 TACAACCCTTT
*
22057797 GCTCTGATACCACCTTTGTCACTAGGGGTGGGAGATCACAGAGCACCCTTTCCCCTTCGCTACGA
1 GCTCTGATACCACCTTTGTCACTAGGGGCGGGAGATCACAGAGCACCCTTTCCCCTTCGCTACGA
* *
22057862 TGGCAACAAATGGTACCTATCAAAACACTCATAGGGTGGGAGATCACGAACCACCCACCCCTATA
66 CGGCAACAAATGGTACCTATCAAAACACTCATAGGGTGGGAGATCACAAACCACCCACCCCTATA
* * * *
22057927 AGCCCTTGGGTGGAGAGTCATGTTTCACCACTATTCACATGCGAAAGTTTCCAGGGATCGGATTA
131 AGCCCTTGGATGGAGAGTCATGCTTCACCACTATTCACATGCGAAAGTTCCCAGGGATAGGATTA
22057992 CAACCCTTT
196 CAACCCTTT
*
22058001 GCTCTAATACCACCTTTGT
1 GCTCTGATACCACCTTTGT
22058020 TGCAGCCCAA
Statistics
Matches: 202, Mismatches: 19, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
203 3 0.01
204 197 0.98
205 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (204 bp):
GCTCTGATACCACCTTTGTCACTAGGGGCGGGAGATCACAGAGCACCCTTTCCCCTTCGCTACGA
CGGCAACAAATGGTACCTATCAAAACACTCATAGGGTGGGAGATCACAAACCACCCACCCCTATA
AGCCCTTGGATGGAGAGTCATGCTTCACCACTATTCACATGCGAAAGTTCCCAGGGATAGGATTA
CAACCCTTT
Found at i:22059368 original size:38 final size:38
Alignment explanation
Indices: 22059290--22059386 Score: 108
Period size: 40 Copynumber: 2.5 Consensus size: 38
22059280 ACCCAGCTCA
22059290 TGTGCATCCCCCCACATCGTGCACATAGCCGGAGTCATCG
1 TGTGCATCCCCCCACATCGT-CACATAGCC-GAGTCATCG
* *
22059330 TGTGCATCCCCCCACATCGT-TCATAGTC-AGTGCAATCG
1 TGTGCATCCCCCCACATCGTCACATAGCCGAGT-C-ATCG
*
22059368 TGTACATCCCCCCCACATC
1 TGTGCAT-CCCCCCACATC
22059387 ATGCACACGG
Statistics
Matches: 51, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
36 3 0.06
37 1 0.02
38 16 0.31
39 11 0.22
40 20 0.39
ACGTcount: A:0.21, C:0.39, G:0.18, T:0.23
Consensus pattern (38 bp):
TGTGCATCCCCCCACATCGTCACATAGCCGAGTCATCG
Found at i:22064369 original size:75 final size:75
Alignment explanation
Indices: 22064087--22064358 Score: 382
Period size: 75 Copynumber: 3.6 Consensus size: 75
22064077 TTCTCGCTGT
* ** *
22064087 AGCGAAATTCAGGGAAAAAATTTTGAACCAACCACCTGAGAGTTTCTCGCTGCAGTGAGAATAAA
1 AGCGAAATTCAGGGCAAAAATTTTGAACCAACCACCCAAGAGTTTCTCGCTACAGTGAGAATAAA
22064152 ATTTTGCTAC
66 ATTTTGCTAC
* * * *
22064162 AACGAACTTCAAGGCAAAAATTTTGAACCAACCACCCAAGAGTTTCTCGTTACAGTGAGAATAAA
1 AGCGAAATTCAGGGCAAAAATTTTGAACCAACCACCCAAGAGTTTCTCGCTACAGTGAGAATAAA
** *
22064227 ATTTCACTGC
66 ATTTTGCTAC
* * *
22064237 AGCGAAATTCAGGGCAAAAATTTTGGACCAACCACCCAAGAGTTTCTCACTACAGTGAGAATTAA
1 AGCGAAATTCAGGGCAAAAATTTTGAACCAACCACCCAAGAGTTTCTCGCTACAGTGAGAATAAA
*
22064302 ATTTTGCTAT
66 ATTTTGCTAC
* **
22064312 AGCGAAATTCAGGGCAAAAATTTTGAACCAACTACCTGAGAGTTTCT
1 AGCGAAATTCAGGGCAAAAATTTTGAACCAACCACCCAAGAGTTTCT
22064359 TGCTGTAGTG
Statistics
Matches: 171, Mismatches: 26, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
75 171 1.00
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.25
Consensus pattern (75 bp):
AGCGAAATTCAGGGCAAAAATTTTGAACCAACCACCCAAGAGTTTCTCGCTACAGTGAGAATAAA
ATTTTGCTAC
Found at i:22085717 original size:17 final size:19
Alignment explanation
Indices: 22085676--22085717 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
22085666 GTATATATAT
22085676 ATGAATATATGTTGTGCATTG
1 ATGAATATATGTTGTG-A-TG
22085697 ATGAATA-ATGTTGTG-TG
1 ATGAATATATGTTGTGATG
22085714 ATGA
1 ATGA
22085718 TGTTGAAGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
17 6 0.29
20 8 0.38
21 7 0.33
ACGTcount: A:0.31, C:0.02, G:0.26, T:0.40
Consensus pattern (19 bp):
ATGAATATATGTTGTGATG
Found at i:22085795 original size:40 final size:37
Alignment explanation
Indices: 22085712--22085793 Score: 137
Period size: 37 Copynumber: 2.2 Consensus size: 37
22085702 TAATGTTGTG
* *
22085712 TGATGATGTTGAAGTGTTCGAGTATGGAGTGCACACA
1 TGATGATGTTGAAGTGTACGAGTAAGGAGTGCACACA
22085749 TGATGATGTTGAAGTGTACGAGTAAGGAGTGCACACA
1 TGATGATGTTGAAGTGTACGAGTAAGGAGTGCACACA
*
22085786 TAATGATG
1 TGATGATG
22085794 ATATTGCATT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.30, C:0.10, G:0.32, T:0.28
Consensus pattern (37 bp):
TGATGATGTTGAAGTGTACGAGTAAGGAGTGCACACA
Found at i:22085930 original size:11 final size:11
Alignment explanation
Indices: 22085914--22085942 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
22085904 TGGCATTGTT
22085914 AATTGCTCCCA
1 AATTGCTCCCA
22085925 AATTGCTCCCA
1 AATTGCTCCCA
22085936 AATTGCT
1 AATTGCT
22085943 TTTCATTCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.28, C:0.31, G:0.10, T:0.31
Consensus pattern (11 bp):
AATTGCTCCCA
Found at i:22093940 original size:56 final size:56
Alignment explanation
Indices: 22093876--22093995 Score: 147
Period size: 56 Copynumber: 2.1 Consensus size: 56
22093866 AGGTTTGCAA
* *
22093876 GGTGGCCAAATAGCATGAAAAGAT-AAAATAATGCATG-AATTGTAATTGGCT-AAGTG
1 GGTGGCCAAATAGAATAAAAAGATGAAAAT-ATGCATGCAATT-TAATTGGCTGAA-TG
* * *
22093932 GGTGGCCAAATAGAATAAAAAGATGAAAATGTGCATGCAATTTGATTGGTTGAATG
1 GGTGGCCAAATAGAATAAAAAGATGAAAATATGCATGCAATTTAATTGGCTGAATG
22093988 GGTGGCCA
1 GGTGGCCA
22093996 TATAAATGCA
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
56 45 0.80
57 11 0.20
ACGTcount: A:0.38, C:0.09, G:0.28, T:0.25
Consensus pattern (56 bp):
GGTGGCCAAATAGAATAAAAAGATGAAAATATGCATGCAATTTAATTGGCTGAATG
Found at i:22100957 original size:43 final size:43
Alignment explanation
Indices: 22100878--22100986 Score: 114
Period size: 43 Copynumber: 2.5 Consensus size: 43
22100868 TGACTCGGCT
* * * * **
22100878 ATGTGCAAGTAGGGAATGCGCATAAGCCGAGAATGACCCGGTT
1 ATGTACAAGTAGGGAGTGCGCATAAGCCAAGAATGACCCAGCC
*
22100921 ATGTACGAGTAGGGAGTGCGCATAA-CTCAATG-ATGACCCAGCC
1 ATGTACAAGTAGGGAGTGCGCATAAGC-CAA-GAATGACCCAGCC
*
22100964 ATGTGCAAGTAGGGAGTGCGCAT
1 ATGTACAAGTAGGGAGTGCGCAT
22100987 GAGTTGGTGA
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
42 1 0.02
43 53 0.96
44 1 0.02
ACGTcount: A:0.29, C:0.19, G:0.32, T:0.19
Consensus pattern (43 bp):
ATGTACAAGTAGGGAGTGCGCATAAGCCAAGAATGACCCAGCC
Found at i:22101002 original size:3 final size:3
Alignment explanation
Indices: 22100994--22101053 Score: 56
Period size: 3 Copynumber: 20.7 Consensus size: 3
22100984 CATGAGTTGG
* *
22100994 TGA TGA TGA TGA TG- TGA TGG TG- TGTA TGA TGA TGA TG- GGA TGA
1 TGA TGA TGA TGA TGA TGA TGA TGA TG-A TGA TGA TGA TGA TGA TGA
22101037 TG- TGCA TGA TGA TGA TG
1 TGA TG-A TGA TGA TGA TG
22101054 GGTATACATA
Statistics
Matches: 48, Mismatches: 3, Indels: 12
0.76 0.05 0.19
Matches are distributed among these distances:
2 7 0.15
3 37 0.77
4 4 0.08
ACGTcount: A:0.25, C:0.02, G:0.38, T:0.35
Consensus pattern (3 bp):
TGA
Found at i:22101030 original size:26 final size:23
Alignment explanation
Indices: 22100996--22101055 Score: 93
Period size: 23 Copynumber: 2.6 Consensus size: 23
22100986 TGAGTTGGTG
* * *
22100996 ATGATGATGATGTGATGGTGTGT
1 ATGATGATGATGGGATGATGTGC
22101019 ATGATGATGATGGGATGATGTGC
1 ATGATGATGATGGGATGATGTGC
22101042 ATGATGATGATGGG
1 ATGATGATGATGGG
22101056 TATACATATA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.25, C:0.02, G:0.40, T:0.33
Consensus pattern (23 bp):
ATGATGATGATGGGATGATGTGC
Found at i:22101902 original size:3 final size:3
Alignment explanation
Indices: 22101894--22101953 Score: 56
Period size: 3 Copynumber: 20.7 Consensus size: 3
22101884 CATAAGTTGG
* *
22101894 TGA TGA TGA TGA TG- TGA TGG TG- TGTA TGA TGA TGA TG- GGA TGA
1 TGA TGA TGA TGA TGA TGA TGA TGA TG-A TGA TGA TGA TGA TGA TGA
22101937 TG- TGCA TGA TGA TGA TG
1 TGA TG-A TGA TGA TGA TG
22101954 GGTATACGTA
Statistics
Matches: 48, Mismatches: 3, Indels: 12
0.76 0.05 0.19
Matches are distributed among these distances:
2 7 0.15
3 37 0.77
4 4 0.08
ACGTcount: A:0.25, C:0.02, G:0.38, T:0.35
Consensus pattern (3 bp):
TGA
Found at i:22101930 original size:26 final size:23
Alignment explanation
Indices: 22101896--22101955 Score: 93
Period size: 23 Copynumber: 2.6 Consensus size: 23
22101886 TAAGTTGGTG
* * *
22101896 ATGATGATGATGTGATGGTGTGT
1 ATGATGATGATGGGATGATGTGC
22101919 ATGATGATGATGGGATGATGTGC
1 ATGATGATGATGGGATGATGTGC
22101942 ATGATGATGATGGG
1 ATGATGATGATGGG
22101956 TATACGTATA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.25, C:0.02, G:0.40, T:0.33
Consensus pattern (23 bp):
ATGATGATGATGGGATGATGTGC
Found at i:22102758 original size:43 final size:43
Alignment explanation
Indices: 22102679--22102787 Score: 105
Period size: 43 Copynumber: 2.5 Consensus size: 43
22102669 TGACTCGGCT
* * * **
22102679 ATGTGCGAGTAGGGAGTGCTCATAAGCCGAGAATGACACGGTT
1 ATGTACGAGTAGGGAGTGCGCATAAGCCGAGAATGACACAGCC
* * *
22102722 ATGTACTAGTAGGGAGTGCGCATAA-CTC-AGTGATGACCCAGCC
1 ATGTACGAGTAGGGAGTGCGCATAAGC-CGAG-AATGACACAGCC
*
22102765 ATGTGCGAGTAGGGAGTGCGCAT
1 ATGTACGAGTAGGGAGTGCGCAT
22102788 GAGGTAGTGA
Statistics
Matches: 54, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
42 3 0.06
43 51 0.94
ACGTcount: A:0.27, C:0.18, G:0.34, T:0.21
Consensus pattern (43 bp):
ATGTACGAGTAGGGAGTGCGCATAAGCCGAGAATGACACAGCC
Found at i:22102803 original size:3 final size:3
Alignment explanation
Indices: 22102795--22102854 Score: 56
Period size: 3 Copynumber: 20.7 Consensus size: 3
22102785 CATGAGGTAG
* *
22102795 TGA TGA TGA TGA TG- TGA TGG TG- TGTA TGA TGA TGA TG- GGA TGA
1 TGA TGA TGA TGA TGA TGA TGA TGA TG-A TGA TGA TGA TGA TGA TGA
22102838 TG- TGCA TGA TGA TGA TG
1 TGA TG-A TGA TGA TGA TG
22102855 GGTATACGTA
Statistics
Matches: 48, Mismatches: 3, Indels: 12
0.76 0.05 0.19
Matches are distributed among these distances:
2 7 0.15
3 37 0.77
4 4 0.08
ACGTcount: A:0.25, C:0.02, G:0.38, T:0.35
Consensus pattern (3 bp):
TGA
Found at i:22102831 original size:26 final size:23
Alignment explanation
Indices: 22102797--22102856 Score: 93
Period size: 23 Copynumber: 2.6 Consensus size: 23
22102787 TGAGGTAGTG
* * *
22102797 ATGATGATGATGTGATGGTGTGT
1 ATGATGATGATGGGATGATGTGC
22102820 ATGATGATGATGGGATGATGTGC
1 ATGATGATGATGGGATGATGTGC
22102843 ATGATGATGATGGG
1 ATGATGATGATGGG
22102857 TATACGTATA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.25, C:0.02, G:0.40, T:0.33
Consensus pattern (23 bp):
ATGATGATGATGGGATGATGTGC
Found at i:22103043 original size:901 final size:901
Alignment explanation
Indices: 22100455--22104955 Score: 8268
Period size: 901 Copynumber: 5.0 Consensus size: 901
22100445 CATTCATTTT
22100455 ATAGTGATTAAGATAGTGAACATAGATAGCCATTTAAAGTGACAATTGAAAGCTAGTTGAGAGAT
1 ATAGTGATTAAGATAGTGAACATAGATAGCCATTTAAAGTGACAATTGAAAGCTAGTTGAGAGAT
22100520 AGCTTTTAGGGTTTATAGTATGTGAATTAACATAATGGTGATGTTCATGTGATGGTAGGTTTCAA
66 AGCTTTTAGGGTTTATAGTATGTGAATTAACATAATGGTGATGTTCATGTGATGGTAGGTTTCAA
*
22100585 GAAAGCCCCATCATCCCATTTGGACAATAAAGGGAATTAGAGTCATCTAAAGGCTCAACAATATA
131 GAAAGCCCCATCATCCCATTTGGACAATTAAGGGAATTAGAGTCATCTAAAGGCTCAACAATATA
* *
22100650 CCGGTGAGTGGACTGCCTATCAAAATCGTTTTGGGAATATGATCGTTTTGTTCAAAGTATTTAAA
196 CCGGTGAGTGGGCTGCCTATCAAAATCGTTTTGGGAATATGATCGTTTTGTACAAAGTATTTAAA
* *
22100715 TGACTCTATAAAACTTTTGTTAAAACAAGTGCCTTGGGAACAAGCCTTTGATAAATCAATTTTAT
261 TGATTCTATACAACTTTTGTTAAAACAAGTGCCTTGGGAACAAGCCTTTGATAAATCAATTTTAT
*
22100780 GTTATGACATGTGGTTATCATGGATCTCTATGCTACAGCATTATGTTAATATACATATACGTTTG
326 GTTATGACATGTGGTTATCATGGATCTCTATGCTGCAGCATTATGTTAATATACATATACGTTTG
* * *
22100845 AATATAGTGTTGTGTAATTATATTGACTCGGCTATGTGCAAGTAGGGAATGCGCATAAGCCGAGA
391 AATATAGTGTTGTGTAATTATATTGACTCGGCTATGTGCGAGTAGGGAGTGCTCATAAGCCGAGA
* *
22100910 ATGACCCGGTTATGTACGAGTAGGGAGTGCGCATAACTCAATGATGACCCAGCCATGTGCAAGTA
456 ATGACCCGGTTATGTACGAGTAGGGAGTGCGCATAACTCAGTGATGACCCAGCCATGTGCGAGTA
22100975 GGGAGTGCGCATGAGTTGGTGATGATGATGATGTGATGGTGTGTATGATGATGATGGGATGATGT
521 GGGAGTGCGCATGAGTTGGTGATGATGATGATGTGATGGTGTGTATGATGATGATGGGATGATGT
* *
22101040 GCATGATGATGATGGGTATACATATACATATATACATATGTAAATATGTGTGTTATACGAAATTT
586 GCATGATGATGATGGGTATACGTATACATATATACATATGTAAATATGTGTGTTATAGGAAATTT
*
22101105 ATGAGTAATGGTATATGGTTGTAATGCATGTGACACTTGACATGTTAAACTTTGGAAAATTGTCA
651 ATGAGTAATGGTATATGGTTGTAATGCATGTGAAACTTGACATGTTAAACTTTGGAAAATTGTCA
* * *
22101170 TGAGTTTCATGTTGACTTGGACATTTCAACAGGGTGGTTTTTCTTTGGGAA-AAGGGGAAAATTT
716 TGCGTTTCATGTTGACTTGGACATTTCAGCAGGGTGGTTTTTCTTTGGGAAGAA-GGGAAAAGTT
* * *
22101234 TTCATTGGTGCCCTGTTTCTCGCTGTAGCAAGAATCATTGTCTCTGTAGCGAGAAACTCTCGAGT
780 TTCATTGGTGCCCTGTTTCTCGCTGCAGCAAGAATCATTTTCTCTGTAGCGAGAAACTCTCGGGT
* * *
22101299 TTGGAGGGGTAGACTGGCCGAAAACTCGCTACAACGAGAATGACACTGTAGCTTAAG
845 TTGGAGGGGTAAACTGGTCGAAAACTCGCTGCAACGAGAATGACACTGTAGCTTAAG
* *
22101356 ATGGTGATTAAGATAGTGAACATAGATAGCCATTTAAAGTGACAATTGAAAGCTAGCTGAGAGAT
1 ATAGTGATTAAGATAGTGAACATAGATAGCCATTTAAAGTGACAATTGAAAGCTAGTTGAGAGAT
* *
22101421 AGCTTTTAGGGTTTATAGTATGTGAATTAACATAATGGTGATGTTCATGTGATGGTAGCTTTTAA
66 AGCTTTTAGGGTTTATAGTATGTGAATTAACATAATGGTGATGTTCATGTGATGGTAGGTTTCAA
22101486 GAAAGCCCCATCATCCCATTTGGACAATTAAGGGAATTAGAGTCATCTAAAGGCTCAACAATATA
131 GAAAGCCCCATCATCCCATTTGGACAATTAAGGGAATTAGAGTCATCTAAAGGCTCAACAATATA
* * * * *
22101551 CCGATGAGTGGACTGCTTATCAAAATCGTTTTGGGAATATGACCGTTTTGTAGAAAGTATTTAAA
196 CCGGTGAGTGGGCTGCCTATCAAAATCGTTTTGGGAATATGATCGTTTTGTACAAAGTATTTAAA
22101616 TGATTCTATACAACTTTTGTTAAAACAAGTGCCTTGGGAACAAGCCTTTGATAAATCAATTTTAT
261 TGATTCTATACAACTTTTGTTAAAACAAGTGCCTTGGGAACAAGCCTTTGATAAATCAATTTTAT
22101681 GTTATGACATGT-GTTATCATGGATCTCTATGCTGCAGCATTATGTTAATATACATATACGTTTG
326 GTTATGACATGTGGTTATCATGGATCTCTATGCTGCAGCATTATGTTAATATACATATACGTTTG
* *
22101745 AATATAGTGTTGTGTAATTATATTGACTTGGCTATGTGCGAGTAGGGAGTGCACATAAGCCGAGA
391 AATATAGTGTTGTGTAATTATATTGACTCGGCTATGTGCGAGTAGGGAGTGCTCATAAGCCGAGA
** *
22101810 ATGACCCGGTTAAATACGAATAGGGAGTGCGCATAACTCAGTGATGACCCAGCCATGTGCGAGTA
456 ATGACCCGGTTATGTACGAGTAGGGAGTGCGCATAACTCAGTGATGACCCAGCCATGTGCGAGTA
* *
22101875 GGAAGTGCGCATAAGTTGGTGATGATGATGATGTGATGGTGTGTATGATGATGATGGGATGATGT
521 GGGAGTGCGCATGAGTTGGTGATGATGATGATGTGATGGTGTGTATGATGATGATGGGATGATGT
* *
22101940 GCATGATGATGATGGGTATACGTATACATATATAGATATGTAAATATGTGAGTTATAGGAAATTT
586 GCATGATGATGATGGGTATACGTATACATATATACATATGTAAATATGTGTGTTATAGGAAATTT
22102005 ATGAGTAATGGTATATGGTTGTAATGCATGTGAAACTTGACATGTTAAACTTTGGAAAATTGTCA
651 ATGAGTAATGGTATATGGTTGTAATGCATGTGAAACTTGACATGTTAAACTTTGGAAAATTGTCA
22102070 TGCGTTTCATGTTGACTTGGACATTTCAGCAGGGTGGTTTTTCTTTGGGAAGAAGGGAAAAGTTT
716 TGCGTTTCATGTTGACTTGGACATTTCAGCAGGGTGGTTTTTCTTTGGGAAGAAGGGAAAAGTTT
22102135 TCATTGGTGCCCTGTTTCTCGCTGCAGCAAGAATCATTTTCTCTGTAGCGAGAAACTCTCGGGTT
781 TCATTGGTGCCCTGTTTCTCGCTGCAGCAAGAATCATTTTCTCTGTAGCGAGAAACTCTCGGGTT
22102200 TGGAGGGGTAAACTGGTCGAAAACTCGCTGCAACGAGAATGACACTGTAGCTTAAG
846 TGGAGGGGTAAACTGGTCGAAAACTCGCTGCAACGAGAATGACACTGTAGCTTAAG
22102256 ATAGTGATTAAGATAGTGAACATAGATAGCCATTTAAAGTGACAATTGAAAGCTAGTTGAGAGAT
1 ATAGTGATTAAGATAGTGAACATAGATAGCCATTTAAAGTGACAATTGAAAGCTAGTTGAGAGAT
* *
22102321 AGCTTTTAGGGGTTATAGTATGTGAATTAACATAATGGTGATGTTCATGCGATGGTAGGTTTCAA
66 AGCTTTTAGGGTTTATAGTATGTGAATTAACATAATGGTGATGTTCATGTGATGGTAGGTTTCAA
*
22102386 GAAAGCCCCATCATCCCATTTGGACAATTAAGGGAATTTGAGTCATCTAAAGGCTCAACAATATA
131 GAAAGCCCCATCATCCCATTTGGACAATTAAGGGAATTAGAGTCATCTAAAGGCTCAACAATATA
* *
22102451 CCGGTGAGTGGGCTGCCTATCATAATCGTTTTGGGAATATGATCATTTTGTACAAAGTATTTAAA
196 CCGGTGAGTGGGCTGCCTATCAAAATCGTTTTGGGAATATGATCGTTTTGTACAAAGTATTTAAA
22102516 TGATTCTATACAACTTTTGTTAAAACAAGTGCCTTGGGAACAAGCCTTTGATAAATCAATTTTAT
261 TGATTCTATACAACTTTTGTTAAAACAAGTGCCTTGGGAACAAGCCTTTGATAAATCAATTTTAT
22102581 GTTATGACATGTGGTTATCATGGATCTCTATGCTGCAGCATTATGTTAATATACATATACGTTTG
326 GTTATGACATGTGGTTATCATGGATCTCTATGCTGCAGCATTATGTTAATATACATATACGTTTG
22102646 AATATAGTGTTGTGTAATTATATTGACTCGGCTATGTGCGAGTAGGGAGTGCTCATAAGCCGAGA
391 AATATAGTGTTGTGTAATTATATTGACTCGGCTATGTGCGAGTAGGGAGTGCTCATAAGCCGAGA
* *
22102711 ATGACACGGTTATGTACTAGTAGGGAGTGCGCATAACTCAGTGATGACCCAGCCATGTGCGAGTA
456 ATGACCCGGTTATGTACGAGTAGGGAGTGCGCATAACTCAGTGATGACCCAGCCATGTGCGAGTA
* *
22102776 GGGAGTGCGCATGAGGTAGTGATGATGATGATGTGATGGTGTGTATGATGATGATGGGATGATGT
521 GGGAGTGCGCATGAGTTGGTGATGATGATGATGTGATGGTGTGTATGATGATGATGGGATGATGT
* * *
22102841 GCATGATGATGATGGGTATACGTATACATATATAGATTTGTAAATATGTGAGTTATAGGAAATTT
586 GCATGATGATGATGGGTATACGTATACATATATACATATGTAAATATGTGTGTTATAGGAAATTT
*
22102906 ATGAGTAATGGTATATGGTTGTAATGCATGTGAAACTTCACATGTTAAACTTTGGAAAATTGTCA
651 ATGAGTAATGGTATATGGTTGTAATGCATGTGAAACTTGACATGTTAAACTTTGGAAAATTGTCA
22102971 TGCGTTTCATGTTGACTTGGACATTTCAGCAGGGTGGTTTTTCTTTGGGAAGAAGGGAAAAGTTT
716 TGCGTTTCATGTTGACTTGGACATTTCAGCAGGGTGGTTTTTCTTTGGGAAGAAGGGAAAAGTTT
* *
22103036 TCATTGGTGCCCTGTTTCTCGCTGCAGCGAGAATCATTTTCTCTGTGGCGAGAAACTCTCGGGTT
781 TCATTGGTGCCCTGTTTCTCGCTGCAGCAAGAATCATTTTCTCTGTAGCGAGAAACTCTCGGGTT
22103101 TGGAGGGGTAAACTGGTCGAAAACTCGCTGCAACGAGAATGACACTGTAGCTTAAG
846 TGGAGGGGTAAACTGGTCGAAAACTCGCTGCAACGAGAATGACACTGTAGCTTAAG
* * *
22103157 ATTGTGATTAAGATAGTGAATATAGATAGCCATTTAAAGTGACAATTGAAAGCTAGTTGAGATAT
1 ATAGTGATTAAGATAGTGAACATAGATAGCCATTTAAAGTGACAATTGAAAGCTAGTTGAGAGAT
*
22103222 AGCTTTTAGGGTTTATAGTATGTGAATTAACATAATGGTGATGTTCATGTGATGGTAGGTTTCAT
66 AGCTTTTAGGGTTTATAGTATGTGAATTAACATAATGGTGATGTTCATGTGATGGTAGGTTTCAA
* *
22103287 GAAAGCCCTATCATCCCATTTGGACAATTAAGGGAATTGGAGTCATCTAAAGGCTCAACAATATA
131 GAAAGCCCCATCATCCCATTTGGACAATTAAGGGAATTAGAGTCATCTAAAGGCTCAACAATATA
*
22103352 CCGGTGAGTGGGCTGCCTATCAAAATCATTTTGGGAATATGATCGTTTTGTACAAAGTATTTAAA
196 CCGGTGAGTGGGCTGCCTATCAAAATCGTTTTGGGAATATGATCGTTTTGTACAAAGTATTTAAA
22103417 TGATTCTATACAACTTTTGTTAAAACAAGTGCCTTGGGAACAAGCCTTTGATAAATCAATTTTAT
261 TGATTCTATACAACTTTTGTTAAAACAAGTGCCTTGGGAACAAGCCTTTGATAAATCAATTTTAT
22103482 GTTATGACATGTGGTTATCATGGATCTCTATGCTGCAGCATTATGTTAATATACATATACGTTTG
326 GTTATGACATGTGGTTATCATGGATCTCTATGCTGCAGCATTATGTTAATATACATATACGTTTG
22103547 AATATAGTGTTGTGTAATTATATTGACTCGGCTATGTGCGAGTAGGGAGTGCTCATAAGCCGAGA
391 AATATAGTGTTGTGTAATTATATTGACTCGGCTATGTGCGAGTAGGGAGTGCTCATAAGCCGAGA
22103612 ATGACCCGGTTATGTACGAGTAGGGAGTGCGCATAACTCAGTGATGACCCAGCCATGTGCGAGTA
456 ATGACCCGGTTATGTACGAGTAGGGAGTGCGCATAACTCAGTGATGACCCAGCCATGTGCGAGTA
22103677 GGGAGTGCGCATGAGTTGGTGATGATGATGATGTGATGGTGTGTATGATGATGATGGGATGATGT
521 GGGAGTGCGCATGAGTTGGTGATGATGATGATGTGATGGTGTGTATGATGATGATGGGATGATGT
22103742 GCATGATGATGATGGGTATACGTATACATATATACATATGTAAATATGTGTGTTATAGGAAATTT
586 GCATGATGATGATGGGTATACGTATACATATATACATATGTAAATATGTGTGTTATAGGAAATTT
22103807 ATGAGTAATGGTATATGGTTGTAATGCATGTGAAACTTGACATGTTAAACTTTGGAAAATTGTCA
651 ATGAGTAATGGTATATGGTTGTAATGCATGTGAAACTTGACATGTTAAACTTTGGAAAATTGTCA
22103872 TGCGTTTCATGTTGACTTGGACATTTCAGCAGGGTGGTTTTTCTTTGGGAAGAAGGGAAAAGTTT
716 TGCGTTTCATGTTGACTTGGACATTTCAGCAGGGTGGTTTTTCTTTGGGAAGAAGGGAAAAGTTT
22103937 TCATTGGTGCCCTGTTTCTCGCTGCAGCAAGAATCATTTTCTCTGTAGCGAGAAACTCTCGGGTT
781 TCATTGGTGCCCTGTTTCTCGCTGCAGCAAGAATCATTTTCTCTGTAGCGAGAAACTCTCGGGTT
22104002 TGGAGGGGTAAACTGGTCGAAAACTCGCTGCAACGAGAATGACACTGTAGCTTAAG
846 TGGAGGGGTAAACTGGTCGAAAACTCGCTGCAACGAGAATGACACTGTAGCTTAAG
22104058 ATAGTGATTAAGATAGTGAACATAGATAGCCATTTAAAGTGACAATTGAAAGCTAGTTGAGAGAT
1 ATAGTGATTAAGATAGTGAACATAGATAGCCATTTAAAGTGACAATTGAAAGCTAGTTGAGAGAT
*
22104123 AGCTTTTAGGGGTTATAGTATGTGAATTAACATAATGGTGATGTTCATGTGATGGTAGGTTTCAA
66 AGCTTTTAGGGTTTATAGTATGTGAATTAACATAATGGTGATGTTCATGTGATGGTAGGTTTCAA
*
22104188 GAAAGCCCCATCATCCCATTTGGACAATTAAGGGAATTTGAGTCATCTAAAGGCTCAACAATATA
131 GAAAGCCCCATCATCCCATTTGGACAATTAAGGGAATTAGAGTCATCTAAAGGCTCAACAATATA
*
22104253 CCGGTGAGTGGGCTGCCTATCAAAATCATTTTGGGAATATGATCGTTTTGTACAAAGTATTTAAA
196 CCGGTGAGTGGGCTGCCTATCAAAATCGTTTTGGGAATATGATCGTTTTGTACAAAGTATTTAAA
22104318 TGATTCTATACAACTTTTGTTAAAACAAGTGCCTTGGGAACAAGCCTTTGATAAATCAATTTTAT
261 TGATTCTATACAACTTTTGTTAAAACAAGTGCCTTGGGAACAAGCCTTTGATAAATCAATTTTAT
22104383 GTTATGACATGTGGTTATCATGGATCTCTATGCTGCAGCATTATGTTAATATACATATACGTTTG
326 GTTATGACATGTGGTTATCATGGATCTCTATGCTGCAGCATTATGTTAATATACATATACGTTTG
22104448 AATATAGTGTTGTGTAATTATATTGACTCGGCTATGTGCGAGTAGGGAGTGCTCATAAGCCGAGA
391 AATATAGTGTTGTGTAATTATATTGACTCGGCTATGTGCGAGTAGGGAGTGCTCATAAGCCGAGA
22104513 ATGACCCGGTTATGTACGAGTAGGGAGTGCGCATAACTCAGTGATGACCCAGCCATGTGCGAGTA
456 ATGACCCGGTTATGTACGAGTAGGGAGTGCGCATAACTCAGTGATGACCCAGCCATGTGCGAGTA
*
22104578 GGGAGTGCGCATGAGTTGGTGATGATGATGATGTGATGTTGTGTATGATGATGATGGGATGATGT
521 GGGAGTGCGCATGAGTTGGTGATGATGATGATGTGATGGTGTGTATGATGATGATGGGATGATGT
*
22104643 GCATGATGATGATGGGTATACATATACATATATACATATGTAAATATGTGTGTTATAGGAAATTT
586 GCATGATGATGATGGGTATACGTATACATATATACATATGTAAATATGTGTGTTATAGGAAATTT
* *
22104708 ATGAGCAATGGTATATGGTTGTAATGCATGTAAAACTTGACATGTTAAACTTTGGAAAATTGTCA
651 ATGAGTAATGGTATATGGTTGTAATGCATGTGAAACTTGACATGTTAAACTTTGGAAAATTGTCA
* * *
22104773 TGTGTTTCATGTTGACTTGGACATTTCAGCAGGGTGGTTTTTCTTTGGGACGAAGGGAAAATTTT
716 TGCGTTTCATGTTGACTTGGACATTTCAGCAGGGTGGTTTTTCTTTGGGAAGAAGGGAAAAGTTT
* *
22104838 TCATTGGTGCCCTGTCTCTCGCTGCAGCGAGAATCATTTTCTCTGTAGCGAGAAACTCTCGGGTT
781 TCATTGGTGCCCTGTTTCTCGCTGCAGCAAGAATCATTTTCTCTGTAGCGAGAAACTCTCGGGTT
* * * *
22104903 TGGAAGGGTAGACTGGCCGAAAACTCGTTGCAACGAGAATGACACTGTAGCTT
846 TGGAGGGGTAAACTGGTCGAAAACTCGCTGCAACGAGAATGACACTGTAGCTT
22104956 CTCGCTGCAG
Statistics
Matches: 3490, Mismatches: 108, Indels: 4
0.97 0.03 0.00
Matches are distributed among these distances:
900 857 0.25
901 2633 0.75
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.32
Consensus pattern (901 bp):
ATAGTGATTAAGATAGTGAACATAGATAGCCATTTAAAGTGACAATTGAAAGCTAGTTGAGAGAT
AGCTTTTAGGGTTTATAGTATGTGAATTAACATAATGGTGATGTTCATGTGATGGTAGGTTTCAA
GAAAGCCCCATCATCCCATTTGGACAATTAAGGGAATTAGAGTCATCTAAAGGCTCAACAATATA
CCGGTGAGTGGGCTGCCTATCAAAATCGTTTTGGGAATATGATCGTTTTGTACAAAGTATTTAAA
TGATTCTATACAACTTTTGTTAAAACAAGTGCCTTGGGAACAAGCCTTTGATAAATCAATTTTAT
GTTATGACATGTGGTTATCATGGATCTCTATGCTGCAGCATTATGTTAATATACATATACGTTTG
AATATAGTGTTGTGTAATTATATTGACTCGGCTATGTGCGAGTAGGGAGTGCTCATAAGCCGAGA
ATGACCCGGTTATGTACGAGTAGGGAGTGCGCATAACTCAGTGATGACCCAGCCATGTGCGAGTA
GGGAGTGCGCATGAGTTGGTGATGATGATGATGTGATGGTGTGTATGATGATGATGGGATGATGT
GCATGATGATGATGGGTATACGTATACATATATACATATGTAAATATGTGTGTTATAGGAAATTT
ATGAGTAATGGTATATGGTTGTAATGCATGTGAAACTTGACATGTTAAACTTTGGAAAATTGTCA
TGCGTTTCATGTTGACTTGGACATTTCAGCAGGGTGGTTTTTCTTTGGGAAGAAGGGAAAAGTTT
TCATTGGTGCCCTGTTTCTCGCTGCAGCAAGAATCATTTTCTCTGTAGCGAGAAACTCTCGGGTT
TGGAGGGGTAAACTGGTCGAAAACTCGCTGCAACGAGAATGACACTGTAGCTTAAG
Found at i:22103659 original size:43 final size:43
Alignment explanation
Indices: 22103570--22103688 Score: 143
Period size: 43 Copynumber: 2.8 Consensus size: 43
22103560 GTAATTATAT
* *
22103570 TGACTCGGCTATGTGCGAGTAGGGAGTGCTCATAAGCCGAGAA
1 TGACCCGGCTATGTGCGAGTAGGGAGTGCGCATAAGCCGAGAA
* * *
22103613 TGACCCGGTTATGTACGAGTAGGGAGTGCGCATAA-CTC-AGTGA
1 TGACCCGGCTATGTGCGAGTAGGGAGTGCGCATAAGC-CGAG-AA
* *
22103656 TGACCCAGCCATGTGCGAGTAGGGAGTGCGCAT
1 TGACCCGGCTATGTGCGAGTAGGGAGTGCGCAT
22103689 GAGTTGGTGA
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
42 3 0.05
43 62 0.95
ACGTcount: A:0.24, C:0.20, G:0.34, T:0.21
Consensus pattern (43 bp):
TGACCCGGCTATGTGCGAGTAGGGAGTGCGCATAAGCCGAGAA
Found at i:22103704 original size:3 final size:3
Alignment explanation
Indices: 22103696--22103755 Score: 56
Period size: 3 Copynumber: 20.7 Consensus size: 3
22103686 CATGAGTTGG
* *
22103696 TGA TGA TGA TGA TG- TGA TGG TG- TGTA TGA TGA TGA TG- GGA TGA
1 TGA TGA TGA TGA TGA TGA TGA TGA TG-A TGA TGA TGA TGA TGA TGA
22103739 TG- TGCA TGA TGA TGA TG
1 TGA TG-A TGA TGA TGA TG
22103756 GGTATACGTA
Statistics
Matches: 48, Mismatches: 3, Indels: 12
0.76 0.05 0.19
Matches are distributed among these distances:
2 7 0.15
3 37 0.77
4 4 0.08
ACGTcount: A:0.25, C:0.02, G:0.38, T:0.35
Consensus pattern (3 bp):
TGA
Found at i:22103732 original size:26 final size:23
Alignment explanation
Indices: 22103698--22103757 Score: 93
Period size: 23 Copynumber: 2.6 Consensus size: 23
22103688 TGAGTTGGTG
* * *
22103698 ATGATGATGATGTGATGGTGTGT
1 ATGATGATGATGGGATGATGTGC
22103721 ATGATGATGATGGGATGATGTGC
1 ATGATGATGATGGGATGATGTGC
22103744 ATGATGATGATGGG
1 ATGATGATGATGGG
22103758 TATACGTATA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.25, C:0.02, G:0.40, T:0.33
Consensus pattern (23 bp):
ATGATGATGATGGGATGATGTGC
Found at i:22104560 original size:43 final size:43
Alignment explanation
Indices: 22104471--22104589 Score: 143
Period size: 43 Copynumber: 2.8 Consensus size: 43
22104461 GTAATTATAT
* *
22104471 TGACTCGGCTATGTGCGAGTAGGGAGTGCTCATAAGCCGAGAA
1 TGACCCGGCTATGTGCGAGTAGGGAGTGCGCATAAGCCGAGAA
* * *
22104514 TGACCCGGTTATGTACGAGTAGGGAGTGCGCATAA-CTC-AGTGA
1 TGACCCGGCTATGTGCGAGTAGGGAGTGCGCATAAGC-CGAG-AA
* *
22104557 TGACCCAGCCATGTGCGAGTAGGGAGTGCGCAT
1 TGACCCGGCTATGTGCGAGTAGGGAGTGCGCAT
22104590 GAGTTGGTGA
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
42 3 0.05
43 62 0.95
ACGTcount: A:0.24, C:0.20, G:0.34, T:0.21
Consensus pattern (43 bp):
TGACCCGGCTATGTGCGAGTAGGGAGTGCGCATAAGCCGAGAA
Found at i:22104605 original size:3 final size:3
Alignment explanation
Indices: 22104597--22104656 Score: 56
Period size: 3 Copynumber: 20.7 Consensus size: 3
22104587 CATGAGTTGG
* *
22104597 TGA TGA TGA TGA TG- TGA TGT TG- TGTA TGA TGA TGA TG- GGA TGA
1 TGA TGA TGA TGA TGA TGA TGA TGA TG-A TGA TGA TGA TGA TGA TGA
22104640 TG- TGCA TGA TGA TGA TG
1 TGA TG-A TGA TGA TGA TG
22104657 GGTATACATA
Statistics
Matches: 48, Mismatches: 3, Indels: 12
0.76 0.05 0.19
Matches are distributed among these distances:
2 7 0.15
3 37 0.77
4 4 0.08
ACGTcount: A:0.25, C:0.02, G:0.37, T:0.37
Consensus pattern (3 bp):
TGA
Found at i:22104620 original size:8 final size:8
Alignment explanation
Indices: 22104597--22104656 Score: 52
Period size: 8 Copynumber: 7.2 Consensus size: 8
22104587 CATGAGTTGG
22104597 TGATGATGA
1 TGATG-TGA
22104606 TGATGTGA
1 TGATGTGA
*
22104614 TGTTGTG-
1 TGATGTGA
22104621 T-ATGATGA
1 TGATG-TGA
*
22104629 TGATGGGA
1 TGATGTGA
22104637 TGATGTGCA
1 TGATGTG-A
22104646 TGATGATGA
1 TGATG-TGA
22104655 TG
1 TG
22104657 GGTATACATA
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
6 2 0.05
7 3 0.07
8 18 0.43
9 17 0.40
10 2 0.05
ACGTcount: A:0.25, C:0.02, G:0.37, T:0.37
Consensus pattern (8 bp):
TGATGTGA
Found at i:22104633 original size:26 final size:23
Alignment explanation
Indices: 22104599--22104658 Score: 93
Period size: 23 Copynumber: 2.6 Consensus size: 23
22104589 TGAGTTGGTG
* * *
22104599 ATGATGATGATGTGATGTTGTGT
1 ATGATGATGATGGGATGATGTGC
22104622 ATGATGATGATGGGATGATGTGC
1 ATGATGATGATGGGATGATGTGC
22104645 ATGATGATGATGGG
1 ATGATGATGATGGG
22104659 TATACATATA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.25, C:0.02, G:0.38, T:0.35
Consensus pattern (23 bp):
ATGATGATGATGGGATGATGTGC
Found at i:22121395 original size:43 final size:43
Alignment explanation
Indices: 22121306--22121437 Score: 133
Period size: 43 Copynumber: 3.1 Consensus size: 43
22121296 GTAATTATAT
* * *
22121306 TGACTCGGCTATGTGCAAGTAGGGAGTGCGCATAAGCC-GAG-AA
1 TGACCCGGCTATGTGCGAGTAGGGAGTGCGCATAA-CCTG-GTGA
*
22121349 TGACCCGGTTATGTGCGAGTAGGGAGTGCGCATAACCTGGTGA
1 TGACCCGGCTATGTGCGAGTAGGGAGTGCGCATAACCTGGTGA
** * * * * *
22121392 TGACCCAACCATGTACGAGTAGGGAATGCGCATGAGCTGGTGA
1 TGACCCGGCTATGTGCGAGTAGGGAGTGCGCATAACCTGGTGA
22121435 TGA
1 TGA
22121438 TGATGATGTG
Statistics
Matches: 75, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
42 3 0.04
43 72 0.96
ACGTcount: A:0.26, C:0.19, G:0.35, T:0.20
Consensus pattern (43 bp):
TGACCCGGCTATGTGCGAGTAGGGAGTGCGCATAACCTGGTGA
Found at i:22121440 original size:3 final size:3
Alignment explanation
Indices: 22121432--22121514 Score: 70
Period size: 3 Copynumber: 28.7 Consensus size: 3
22121422 CATGAGCTGG
* *
22121432 TGA TGA TGA TGA TG- TGA TGG TG- TGTA TGA TGA TGA TG- GGA TGA
1 TGA TGA TGA TGA TGA TGA TGA TGA TG-A TGA TGA TGA TGA TGA TGA
*
22121475 TG- TGCA TGA TGA TGA TG- GGA TGA TG- TGCA TGA TGA TGA TG
1 TGA TG-A TGA TGA TGA TGA TGA TGA TGA TG-A TGA TGA TGA TG
22121515 GGTATACGTA
Statistics
Matches: 66, Mismatches: 5, Indels: 18
0.74 0.06 0.20
Matches are distributed among these distances:
2 10 0.15
3 50 0.76
4 6 0.09
ACGTcount: A:0.25, C:0.02, G:0.39, T:0.34
Consensus pattern (3 bp):
TGA
Found at i:22121460 original size:20 final size:20
Alignment explanation
Indices: 22121437--22121511 Score: 69
Period size: 20 Copynumber: 3.5 Consensus size: 20
22121427 GCTGGTGATG
*
22121437 ATGATGATGTGATGGTGTGT
1 ATGATGATGTGATGATGTGT
22121457 ATGATGATGATGGGATGATGTGCAT
1 ATGATGATG-T--GATGATGTG--T
* *
22121482 GATGATGATGGGATGATGTGC
1 -ATGATGATGTGATGATGTGT
22121503 ATGATGATG
1 ATGATGATG
22121512 ATGGGTATAC
Statistics
Matches: 46, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
20 18 0.39
21 1 0.02
23 17 0.37
25 1 0.02
26 9 0.20
ACGTcount: A:0.25, C:0.03, G:0.39, T:0.33
Consensus pattern (20 bp):
ATGATGATGTGATGATGTGT
Found at i:22121468 original size:26 final size:23
Alignment explanation
Indices: 22121434--22121516 Score: 139
Period size: 23 Copynumber: 3.6 Consensus size: 23
22121424 TGAGCTGGTG
* * *
22121434 ATGATGATGATGTGATGGTGTGT
1 ATGATGATGATGGGATGATGTGC
22121457 ATGATGATGATGGGATGATGTGC
1 ATGATGATGATGGGATGATGTGC
22121480 ATGATGATGATGGGATGATGTGC
1 ATGATGATGATGGGATGATGTGC
22121503 ATGATGATGATGGG
1 ATGATGATGATGGG
22121517 TATACGTATA
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 57 1.00
ACGTcount: A:0.25, C:0.02, G:0.40, T:0.33
Consensus pattern (23 bp):
ATGATGATGATGGGATGATGTGC
Found at i:22131754 original size:22 final size:22
Alignment explanation
Indices: 22131712--22131752 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
22131702 TACCTTTTGT
*
22131712 CACTTGTTTCCTTGAATTTTCA
1 CACTTGTTCCCTTGAATTTTCA
22131734 CACTT-TTCCCTTGAATTTT
1 CACTTGTTCCCTTGAATTTT
22131753 TCCACCTAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.17, C:0.24, G:0.07, T:0.51
Consensus pattern (22 bp):
CACTTGTTCCCTTGAATTTTCA
Found at i:22134568 original size:22 final size:24
Alignment explanation
Indices: 22134542--22134588 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
22134532 GGGGCATAAA
*
22134542 AACAAAAT-ATAT-ATATATATAT
1 AACAAAATAAAATAATATATATAT
22134564 AACAAAATAAAATAATATATATAT
1 AACAAAATAAAATAATATATATAT
22134588 A
1 A
22134589 TATAGTGGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 8 0.36
23 3 0.14
24 11 0.50
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (24 bp):
AACAAAATAAAATAATATATATAT
Found at i:22134582 original size:28 final size:27
Alignment explanation
Indices: 22134540--22134592 Score: 88
Period size: 28 Copynumber: 1.9 Consensus size: 27
22134530 TGGGGGCATA
22134540 AAAACAAAATATATATATATATATAAC
1 AAAACAAAATATATATATATATATAAC
*
22134567 AAAATAAAATAATATATATATATATA
1 AAAACAAAAT-ATATATATATATATA
22134593 GTGGGTTTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
27 9 0.38
28 15 0.62
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (27 bp):
AAAACAAAATATATATATATATATAAC
Found at i:22157153 original size:2 final size:2
Alignment explanation
Indices: 22157146--22157220 Score: 132
Period size: 2 Copynumber: 37.5 Consensus size: 2
22157136 TGTGCAATCA
* *
22157146 AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22157188 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
22157221 CTCCTAGGTC
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 69 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:22158293 original size:31 final size:31
Alignment explanation
Indices: 22158245--22158303 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
22158235 CCTGTCAAAA
*
22158245 TCTTTTCTTTTTCTTTTCT-TTTTTTTGTGC
1 TCTTTTCTTTTTCTTTTCTCATTTTTTGTGC
*
22158275 TCTTTTCCTTTTTTTTTTCTCATTTTTTG
1 TCTTTT-CTTTTTCTTTTCTCATTTTTTG
22158304 CCGAATTTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 6 0.24
31 12 0.48
32 7 0.28
ACGTcount: A:0.02, C:0.17, G:0.05, T:0.76
Consensus pattern (31 bp):
TCTTTTCTTTTTCTTTTCTCATTTTTTGTGC
Found at i:22159974 original size:22 final size:23
Alignment explanation
Indices: 22159947--22159997 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 23
22159937 AGAAAGGAAG
22159947 AAAAATAAAAGAG-GAAT-GAAA
1 AAAAATAAAAGAGAGAATAGAAA
*
22159968 ACAAAATGAAAGAGAGAATAGAAA
1 A-AAAATAAAAGAGAGAATAGAAA
22159992 AAAAAT
1 AAAAAT
22159998 TAATATATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
21 1 0.04
22 11 0.42
23 9 0.35
24 5 0.19
ACGTcount: A:0.71, C:0.02, G:0.18, T:0.10
Consensus pattern (23 bp):
AAAAATAAAAGAGAGAATAGAAA
Found at i:22162678 original size:161 final size:162
Alignment explanation
Indices: 22162421--22162748 Score: 622
Period size: 161 Copynumber: 2.0 Consensus size: 162
22162411 AAAACAAAAA
22162421 TACAGATAAATGTGTAAATGAAGCTAGTGAAACTCAAGGGTGATTTCATGCATTATGCCAAAGAA
1 TACAGATAAATGTGTAAATGAAGCTAGTGAAACTCAAGGGTGATTTCATGCATTATGCCAAAGAA
22162486 AAACAACAAGAAGAAGAGCTTAGTTAAAGCTGACCTAATTACAC-ATGATACCAAACTATAAAAA
66 AAACAACAAGAAGAAGAGCTTAGTTAAAGCTGACCTAATTACACAATGATACCAAACTATAAAAA
22162550 TATACACACTGTAGTACCCAAACTAAAAAATG
131 TATACACACTGTAGTACCCAAACTAAAAAATG
*
22162582 TACATATAAATGTGTAAATGAAGCTAGTGAAACTCAAGGGTGATTTCATGCATTATGCCAAAGAA
1 TACAGATAAATGTGTAAATGAAGCTAGTGAAACTCAAGGGTGATTTCATGCATTATGCCAAAGAA
22162647 AAACAACAAGAAGAAGAGCTTAGTTAAAGCTGACCTAATTACACATATGATACCAAACTATAAAA
66 AAACAACAAGAAGAAGAGCTTAGTTAAAGCTGACCTAATTACACA-ATGATACCAAACTATAAAA
*
22162712 ATATACACATTGTAGTACCCAAACTAAAAAATG
130 ATATACACACTGTAGTACCCAAACTAAAAAATG
22162745 TACA
1 TACA
22162749 ATTGACTACC
Statistics
Matches: 163, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
161 108 0.66
163 55 0.34
ACGTcount: A:0.46, C:0.16, G:0.15, T:0.23
Consensus pattern (162 bp):
TACAGATAAATGTGTAAATGAAGCTAGTGAAACTCAAGGGTGATTTCATGCATTATGCCAAAGAA
AAACAACAAGAAGAAGAGCTTAGTTAAAGCTGACCTAATTACACAATGATACCAAACTATAAAAA
TATACACACTGTAGTACCCAAACTAAAAAATG
Found at i:22164816 original size:33 final size:30
Alignment explanation
Indices: 22164779--22164839 Score: 77
Period size: 30 Copynumber: 1.9 Consensus size: 30
22164769 TAATACATCT
22164779 ATTATTGAAAAATAAAATACAATATCAGCTATA
1 ATTATTGAAAAA-AAAA-A-AATATCAGCTATA
**
22164812 ATTATTGAGCAAAAAAAAATATCAGCTA
1 ATTATTGAAAAAAAAAAAATATCAGCTA
22164840 CAATGATGCA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 11 0.42
31 1 0.04
32 4 0.15
33 10 0.38
ACGTcount: A:0.54, C:0.10, G:0.08, T:0.28
Consensus pattern (30 bp):
ATTATTGAAAAAAAAAAAATATCAGCTATA
Found at i:22167444 original size:160 final size:160
Alignment explanation
Indices: 22167247--22167567 Score: 484
Period size: 160 Copynumber: 2.0 Consensus size: 160
22167237 TGAAACAGAA
* * * *
22167247 TATAAGTCTAAATTATGGGTAACAAATTAGTTCTCCAATGTAAAGAAGCAAGAATACCTACCTTG
1 TATAAATCTAAATTATGGATAACAAATTAGATCTCCAAGGTAAAGAAGCAAGAATACCTACCTTG
*
22167312 GAACGATTAATTATATCCTTCAATATCTTATTTAAT-CATGATCCATGTGCAGATCACCATCGGC
66 GAACGATTAATTATATCCTTCAATATCTTATTTAATGCATGACCCATGTGCAGATCACCATCGGC
22167376 ACACAAAGGA-CAGTCATGAAGCACAAAATT
131 ACACAAAGGACCA-TCATGAAGCACAAAATT
*
22167406 TATAAATCTAAATTCATGGATAGCAAATTAGATCTCCAAGGTAAAGAAGCAAGAATACCTACCTT
1 TATAAATCTAAATT-ATGGATAACAAATTAGATCTCCAAGGTAAAGAAGCAAGAATACCTACCTT
* * *
22167471 GTAACGATTAATTATATCCTTCAATATCTTATTTAATGCATGACCCATGTGTAGATCACCATTGG
65 GGAACGATTAATTATATCCTTCAATATCTTATTTAATGCATGACCCATGTGCAGATCACCATCGG
** ***
22167536 CGTATGGAGGACCATCATGAAGCACAAAATT
130 CACACAAAGGACCATCATGAAGCACAAAATT
22167567 T
1 T
22167568 CCCTGTAAAA
Statistics
Matches: 145, Mismatches: 14, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
159 13 0.09
160 82 0.57
161 48 0.33
162 2 0.01
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (160 bp):
TATAAATCTAAATTATGGATAACAAATTAGATCTCCAAGGTAAAGAAGCAAGAATACCTACCTTG
GAACGATTAATTATATCCTTCAATATCTTATTTAATGCATGACCCATGTGCAGATCACCATCGGC
ACACAAAGGACCATCATGAAGCACAAAATT
Found at i:22170463 original size:21 final size:22
Alignment explanation
Indices: 22170418--22170465 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
22170408 ATCAATAGTG
*
22170418 AAAAATCGATTCTGAGAAAAGT
1 AAAAGTCGATTCTGAGAAAAGT
* *
22170440 AAAAGTCGATTCTTAGAAGA-T
1 AAAAGTCGATTCTGAGAAAAGT
22170461 AAAAG
1 AAAAG
22170466 CTTCAAGATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 6 0.26
22 17 0.74
ACGTcount: A:0.50, C:0.08, G:0.19, T:0.23
Consensus pattern (22 bp):
AAAAGTCGATTCTGAGAAAAGT
Found at i:22172481 original size:73 final size:72
Alignment explanation
Indices: 22172313--22172504 Score: 196
Period size: 72 Copynumber: 2.7 Consensus size: 72
22172303 AAGGATTGAG
* * * *
22172313 AAACAGAGA-AGACTTAGTCGACCAAGAAGTAGGTTAGTCAACTAAGAGCCTATTGAAAAAATCT
1 AAACAGAGACA-ACTTAGTCGACTAAGAAGTAAGTTAGTCGACTAAGAGCCTACTGAAAAAATCT
*
22172377 GGACTTCA
65 GGACTTAA
* * * *
22172385 AAACAGAAACAACTTAATCGACTAAGAAGTAAGTTAGTCGACTAAGTG-CTCACTGCCAAAAA-C
1 AAACAGAGACAACTTAGTCGACTAAGAAGTAAGTTAGTCGACTAAGAGCCT-ACTG-AAAAAATC
22172448 TGGGA-TTAA
64 T-GGACTTAA
* *
22172457 AAGACAGAGACAACTTAGTTGACTAAG-AGCACAGTTAGTCGACTAAGA
1 AA-ACAGAGACAACTTAGTCGACTAAGAAGTA-AGTTAGTCGACTAAGA
22172505 TCATTCTGTT
Statistics
Matches: 100, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
71 2 0.02
72 53 0.53
73 45 0.45
ACGTcount: A:0.42, C:0.17, G:0.20, T:0.20
Consensus pattern (72 bp):
AAACAGAGACAACTTAGTCGACTAAGAAGTAAGTTAGTCGACTAAGAGCCTACTGAAAAAATCTG
GACTTAA
Found at i:22174389 original size:17 final size:17
Alignment explanation
Indices: 22174359--22174391 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
22174349 TTCTTCATAA
22174359 AATAAAACTCCTTATTG
1 AATAAAACTCCTTATTG
22174376 AATAATAACT-CTTATT
1 AATAA-AACTCCTTATT
22174392 TTATTATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.39
Consensus pattern (17 bp):
AATAAAACTCCTTATTG
Found at i:22174586 original size:28 final size:28
Alignment explanation
Indices: 22174554--22174706 Score: 132
Period size: 28 Copynumber: 5.3 Consensus size: 28
22174544 ATTAAGAAAA
*
22174554 AAATAT-TTTATCTTGTTTAAATTGAGAC
1 AAATATGTTT-TCTTGTTTAAATTAAGAC
*
22174582 AAATATGTTTTCTT-TTCTAGATTAAGAC
1 AAATATGTTTTCTTGTT-TAAATTAAGAC
*
22174610 AAAAAATAT-TTTTCTTGTCTTAAATTTAGAC
1 ---AAATATGTTTTCTTGT-TTAAATTAAGAC
* * *
22174641 AAACATATTTTCTTATTTAAATTAAGACC
1 AAATATGTTTTCTTGTTTAAATTAAGA-C
* * *
22174670 AAACATGTTTTCTTGTCTGAATTAAGAC
1 AAATATGTTTTCTTGTTTAAATTAAGAC
*
22174698 AAACATGTT
1 AAATATGTT
22174707 AAAGTTGCCA
Statistics
Matches: 105, Mismatches: 11, Indels: 18
0.78 0.08 0.13
Matches are distributed among these distances:
27 2 0.02
28 44 0.42
29 35 0.33
30 7 0.07
31 16 0.15
32 1 0.01
ACGTcount: A:0.37, C:0.11, G:0.09, T:0.43
Consensus pattern (28 bp):
AAATATGTTTTCTTGTTTAAATTAAGAC
Done.