Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41236440
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2030548 characters in sequence are not A, C, G, or T
File 59 of 106
Found at i:22174635 original size:59 final size:59
Alignment explanation
Indices: 22174543--22174706 Score: 194
Period size: 59 Copynumber: 2.8 Consensus size: 59
22174533 TATTGTCTTT
* *
22174543 AATTAAGA-AAAAAATATTTTATCTTGT-TTAAATTGAGACAAATATGTTTTCTT-TTCTA
1 AATTAAGACAAAAAATATTTT-TCTTGTCTTAAATTAAGACAAACATGTTTTCTTATT-TA
* * *
22174601 GATTAAGACAAAAAATATTTTTCTTGTCTTAAATTTAGACAAACATATTTTCTTATTTA
1 AATTAAGACAAAAAATATTTTTCTTGTCTTAAATTAAGACAAACATGTTTTCTTATTTA
* * * *
22174660 AATTAAGACCAAACAT-GTTTTCTTGTC-TGAATTAAGACAAACATGTT
1 AATTAAGACAAAAAATATTTTTCTTGTCTTAAATTAAGACAAACATGTT
22174707 AAAGTTGCCA
Statistics
Matches: 92, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
57 17 0.18
58 23 0.25
59 50 0.54
60 2 0.02
ACGTcount: A:0.39, C:0.10, G:0.09, T:0.41
Consensus pattern (59 bp):
AATTAAGACAAAAAATATTTTTCTTGTCTTAAATTAAGACAAACATGTTTTCTTATTTA
Found at i:22174672 original size:29 final size:28
Alignment explanation
Indices: 22174543--22174703 Score: 144
Period size: 29 Copynumber: 5.5 Consensus size: 28
22174533 TATTGTCTTT
* *
22174543 AATTAAGAAAAAAATATTTTATCTTGTTTA
1 AATTAAGACAAACATA-TTT-TCTTGTTTA
* * *
22174573 AATTGAGACAAATATGTTTTCTT-TTCTA
1 AATTAAGACAAACATATTTTCTTGTT-TA
* *
22174601 GATTAAGACAAAAAATATTTTTCTTGTCTTA
1 AATTAAGAC-AAACATA-TTTTCTTGT-TTA
* *
22174632 AATTTAGACAAACATATTTTCTTATTTA
1 AATTAAGACAAACATATTTTCTTGTTTA
* * *
22174660 AATTAAGACCAAACATGTTTTCTTGTCTG
1 AATTAAGA-CAAACATATTTTCTTGTTTA
22174689 AATTAAGACAAACAT
1 AATTAAGACAAACAT
22174704 GTTAAAGTTG
Statistics
Matches: 108, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
27 2 0.02
28 30 0.28
29 40 0.37
30 25 0.23
31 10 0.09
32 1 0.01
ACGTcount: A:0.40, C:0.11, G:0.09, T:0.41
Consensus pattern (28 bp):
AATTAAGACAAACATATTTTCTTGTTTA
Found at i:22177750 original size:37 final size:37
Alignment explanation
Indices: 22177682--22177754 Score: 101
Period size: 37 Copynumber: 2.0 Consensus size: 37
22177672 TACCACCATA
* ** *
22177682 TGTGCACTCCCTACTCGCACATTTTAATGTCATCATG
1 TGTGCACTCCCTACTCACACACCTCAATGTCATCATG
*
22177719 TGTGCACTCCCTACTCACACACCTCATTGTCATCAT
1 TGTGCACTCCCTACTCACACACCTCAATGTCATCAT
22177755 ACAACATTAT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.22, C:0.34, G:0.11, T:0.33
Consensus pattern (37 bp):
TGTGCACTCCCTACTCACACACCTCAATGTCATCATG
Found at i:22187955 original size:42 final size:42
Alignment explanation
Indices: 22187887--22188055 Score: 221
Period size: 42 Copynumber: 4.0 Consensus size: 42
22187877 TGTAATGATA
* ** * *
22187887 TTGACCCGGCTACGTGTAAGTAGGAGTGCGTATAAGCCGATG
1 TTGACCCGGCTATGTGCGAGTGGGAGTGCGCATAAGCCGATG
*
22187929 TTGACCCGGCTATGTGCGAGTGGGAGTGCGCATAACCCGATG
1 TTGACCCGGCTATGTGCGAGTGGGAGTGCGCATAAGCCGATG
*
22187971 TTGACCCGGCTATGTGTGAGTGGGAGTGCGCATAAGCCGATG
1 TTGACCCGGCTATGTGCGAGTGGGAGTGCGCATAAGCCGATG
* * * * *
22188013 CTAACTCGGCTATGTGCGAGTAGGGAGTGTGCATAAGCAGATG
1 TTGACCCGGCTATGTGCGAGT-GGGAGTGCGCATAAGCCGATG
22188056 GTGATGATGA
Statistics
Matches: 112, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
42 93 0.83
43 19 0.17
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.23
Consensus pattern (42 bp):
TTGACCCGGCTATGTGCGAGTGGGAGTGCGCATAAGCCGATG
Found at i:22188028 original size:84 final size:85
Alignment explanation
Indices: 22187887--22188048 Score: 245
Period size: 84 Copynumber: 1.9 Consensus size: 85
22187877 TGTAATGATA
* * *
22187887 TTGACCCGGCTACGTGTAAGTAGGAGTGCGTATAAGCCGATGTTGACCCGGCTATGTGCGAGT-G
1 TTGACCCGGCTACGTGTAAGTAGGAGTGCGCATAAGCCGATGCTAACCCGGCTATGTGCGAGTAG
22187951 GGAGTGCGCATAACCCGATG
66 GGAGTGCGCATAACCCGATG
* * * *
22187971 TTGACCCGGCTATGTGTGAGTGGGAGTGCGCATAAGCCGATGCTAACTCGGCTATGTGCGAGTAG
1 TTGACCCGGCTACGTGTAAGTAGGAGTGCGCATAAGCCGATGCTAACCCGGCTATGTGCGAGTAG
*
22188036 GGAGTGTGCATAA
66 GGAGTGCGCATAA
22188049 GCAGATGGTG
Statistics
Matches: 69, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
84 56 0.81
85 13 0.19
ACGTcount: A:0.22, C:0.20, G:0.35, T:0.23
Consensus pattern (85 bp):
TTGACCCGGCTACGTGTAAGTAGGAGTGCGCATAAGCCGATGCTAACCCGGCTATGTGCGAGTAG
GGAGTGCGCATAACCCGATG
Found at i:22191776 original size:22 final size:22
Alignment explanation
Indices: 22191750--22191791 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
22191740 GAAACTGTAA
22191750 TGGGTTGCAGTTATGAGATTCT
1 TGGGTTGCAGTTATGAGATTCT
22191772 TGGGTTGCAGTTATGAGATT
1 TGGGTTGCAGTTATGAGATT
22191792 TCTATGCATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.19, C:0.07, G:0.33, T:0.40
Consensus pattern (22 bp):
TGGGTTGCAGTTATGAGATTCT
Found at i:22197992 original size:2 final size:2
Alignment explanation
Indices: 22197985--22198027 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
22197975 CATGCACAAC
22197985 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22198027 A
1 A
22198028 NNNNNNNNNN
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:22198181 original size:2 final size:2
Alignment explanation
Indices: 22198176--22198215 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
22198166 NNNNNCACAC
22198176 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22198216 TCCAACATAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:22214281 original size:19 final size:19
Alignment explanation
Indices: 22214257--22214294 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
22214247 CCATTTGACT
*
22214257 TATTGGAGTATGATTTGAG
1 TATTGGAGTATAATTTGAG
22214276 TATTGGAGTATAATTTGAG
1 TATTGGAGTATAATTTGAG
22214295 GGTTTGGCAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.42
Consensus pattern (19 bp):
TATTGGAGTATAATTTGAG
Found at i:22234932 original size:51 final size:51
Alignment explanation
Indices: 22234870--22234970 Score: 202
Period size: 51 Copynumber: 2.0 Consensus size: 51
22234860 AATAGTTTGT
22234870 GTAAAATGTTTAGGAGCACAAATTAAAAATGTTTTAATTTGTAATTTGTAG
1 GTAAAATGTTTAGGAGCACAAATTAAAAATGTTTTAATTTGTAATTTGTAG
22234921 GTAAAATGTTTAGGAGCACAAATTAAAAATGTTTTAATTTGTAATTTGTA
1 GTAAAATGTTTAGGAGCACAAATTAAAAATGTTTTAATTTGTAATTTGTA
22234971 ATAAAAATTT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.40, C:0.04, G:0.17, T:0.40
Consensus pattern (51 bp):
GTAAAATGTTTAGGAGCACAAATTAAAAATGTTTTAATTTGTAATTTGTAG
Found at i:22235653 original size:58 final size:57
Alignment explanation
Indices: 22235563--22235682 Score: 186
Period size: 58 Copynumber: 2.1 Consensus size: 57
22235553 CATAATCATC
* * *
22235563 CAAAGTAGTTTGCATGTGATAGATTTGTTTTATGCAATTTAATAATTGCTATGCAATG
1 CAAAGTAGTATGCATGTGATAGATTTATTTTATGCAATTTAATAAATGCTATGC-ATG
* *
22235621 CAAAGTAGTATGCATGTGATAGATTTATTTTATGCGATTTACTAAATGCTATGCATG
1 CAAAGTAGTATGCATGTGATAGATTTATTTTATGCAATTTAATAAATGCTATGCATG
22235678 CAAAG
1 CAAAG
22235683 ATTATTTACG
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
57 8 0.14
58 49 0.86
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (57 bp):
CAAAGTAGTATGCATGTGATAGATTTATTTTATGCAATTTAATAAATGCTATGCATG
Found at i:22240120 original size:36 final size:36
Alignment explanation
Indices: 22240072--22240201 Score: 170
Period size: 36 Copynumber: 3.6 Consensus size: 36
22240062 ACCCAGCTCA
* * * *
22240072 TGTGCACTCCCACATCGCACATAGCCAAAGTCATCG
1 TGTGCACCCCCACATCGCGCATAGCCAATGCCATCG
* *
22240108 TGTGCACCCCCACATCGCGCGTAGCTAATGCCATCG
1 TGTGCACCCCCACATCGCGCATAGCCAATGCCATCG
* *
22240144 TGTGCACCCCCACATCGCGCACAGCGAATGCCATCG
1 TGTGCACCCCCACATCGCGCATAGCCAATGCCATCG
* *
22240180 TGTGCACCCCTACATCACGCAT
1 TGTGCACCCCCACATCGCGCAT
22240202 TGGCAATATC
Statistics
Matches: 82, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 82 1.00
ACGTcount: A:0.23, C:0.39, G:0.19, T:0.18
Consensus pattern (36 bp):
TGTGCACCCCCACATCGCGCATAGCCAATGCCATCG
Found at i:22242345 original size:2 final size:2
Alignment explanation
Indices: 22242338--22242367 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
22242328 AATACGCAAC
22242338 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22242368 CACAATACTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:22242444 original size:68 final size:67
Alignment explanation
Indices: 22242357--22242492 Score: 247
Period size: 68 Copynumber: 2.0 Consensus size: 67
22242347 TATATATATA
22242357 TATATATATATCACAATACTATAGGAGCACAAGGATCCATCATATTTCACATTCACAACATACAA
1 TATATATATATCACAATACTATAGGAGCACAAGGATCCATCATATTTCACATTCACAACATACAA
22242422 CG
66 CG
22242424 TNATATATATATCA-ACATACTATAGGAGCACAAGGATCCATCATATTTCACATTCACAACATAC
1 T-ATATATATATCACA-ATACTATAGGAGCACAAGGATCCATCATATTTCACATTCACAACATAC
22242488 AACG
64 AACG
22242492 T
1 T
22242493 TTCATCAAGG
Statistics
Matches: 67, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
67 2 0.03
68 65 0.97
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.27
Consensus pattern (67 bp):
TATATATATATCACAATACTATAGGAGCACAAGGATCCATCATATTTCACATTCACAACATACAA
CG
Found at i:22243774 original size:14 final size:15
Alignment explanation
Indices: 22243739--22243778 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
22243729 GGAAGGAGTA
**
22243739 AGAAAAGAAAAGGAG
1 AGAAAAGAAAACAAG
22243754 AGAAAAGAAAACAAG
1 AGAAAAGAAAACAAG
22243769 -GAAAAGAAAA
1 AGAAAAGAAAA
22243779 TGAAAATCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 10 0.43
15 13 0.57
ACGTcount: A:0.72, C:0.03, G:0.25, T:0.00
Consensus pattern (15 bp):
AGAAAAGAAAACAAG
Found at i:22244991 original size:23 final size:23
Alignment explanation
Indices: 22244956--22245010 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
22244946 CCACAAGAAT
* *
22244956 AAAAGAAAGAAAG-GAAGAAAGAC
1 AAAAGAAAAAAAGCAAAGAAA-AC
*
22244979 AAAAAAAAAAAAGCAAAGAAAAC
1 AAAAGAAAAAAAGCAAAGAAAAC
22245002 AAAAGAAAA
1 AAAAGAAAA
22245011 GAATGTAGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 21 0.78
24 6 0.22
ACGTcount: A:0.78, C:0.05, G:0.16, T:0.00
Consensus pattern (23 bp):
AAAAGAAAAAAAGCAAAGAAAAC
Found at i:22245005 original size:20 final size:20
Alignment explanation
Indices: 22244973--22245011 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
22244963 AGAAAGGAAG
22244973 AAAGACAAAAAAAAAAAAGC
1 AAAGACAAAAAAAAAAAAGC
*
22244993 AAAGA-AAACAAAAGAAAAG
1 AAAGACAAA-AAAAAAAAAG
22245012 AATGTAGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.79, C:0.08, G:0.13, T:0.00
Consensus pattern (20 bp):
AAAGACAAAAAAAAAAAAGC
Found at i:22245503 original size:24 final size:25
Alignment explanation
Indices: 22245463--22245509 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
22245453 TTTGTATAGG
22245463 AAAATTGGACAGCTTTG-TGCTGCC
1 AAAATTGGACAGCTTTGTTGCTGCC
*
22245487 AAAATTGAGA-AGTTTTGTTGCTG
1 AAAATTG-GACAGCTTTGTTGCTG
22245510 AAAATTTGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.34
Consensus pattern (25 bp):
AAAATTGGACAGCTTTGTTGCTGCC
Found at i:22245634 original size:22 final size:22
Alignment explanation
Indices: 22245606--22245653 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
22245596 GAGAGGAAAG
* *
22245606 GAAGAGAGGAAGCCACGGTGGT
1 GAAGAGAGGAAGCCACGATGGA
22245628 GAAGAGAGGAAGCCACGATGGA
1 GAAGAGAGGAAGCCACGATGGA
22245650 GAAG
1 GAAG
22245654 GGAGTGACGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.38, C:0.12, G:0.44, T:0.06
Consensus pattern (22 bp):
GAAGAGAGGAAGCCACGATGGA
Found at i:22245760 original size:31 final size:32
Alignment explanation
Indices: 22245717--22245776 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 32
22245707 GAAAAGAAAA
* *
22245717 GAAATAGAAAATAAGTGGGCATGGCCCAATAG
1 GAAATAGAAAATAAATGGGCATAGCCCAATAG
*
22245749 GAAATA-AAAATAAATGGGCTTAGCCCAA
1 GAAATAGAAAATAAATGGGCATAGCCCAA
22245777 ACAGGAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 19 0.76
32 6 0.24
ACGTcount: A:0.47, C:0.13, G:0.23, T:0.17
Consensus pattern (32 bp):
GAAATAGAAAATAAATGGGCATAGCCCAATAG
Found at i:22245783 original size:32 final size:32
Alignment explanation
Indices: 22245717--22245784 Score: 84
Period size: 31 Copynumber: 2.1 Consensus size: 32
22245707 GAAAAGAAAA
* * *
22245717 GAAATAGAAAATAAGTGGGCATGGCCCAATAG
1 GAAATAGAAAATAAATGGGCATAGCCCAACAG
*
22245749 GAAATA-AAAATAAATGGGCTTAGCCCAAACAG
1 GAAATAGAAAATAAATGGGCATAGCCC-AACAG
22245781 GAAA
1 GAAA
22245785 AATGGATAAG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
31 17 0.55
32 14 0.45
ACGTcount: A:0.49, C:0.13, G:0.24, T:0.15
Consensus pattern (32 bp):
GAAATAGAAAATAAATGGGCATAGCCCAACAG
Found at i:22253376 original size:28 final size:30
Alignment explanation
Indices: 22253318--22253377 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 30
22253308 TTTTTGAAAT
* *
22253318 TTACACTTTTACCCCCGTAAAAGTCAAAAA
1 TTACACTTTTACCCCCGAAAAACTCAAAAA
*
22253348 TTACACTTTTA-CCCC-AAAAACTGAAAAA
1 TTACACTTTTACCCCCGAAAAACTCAAAAA
22253376 TT
1 TT
22253378 GCCCATAGAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 12 0.44
29 4 0.15
30 11 0.41
ACGTcount: A:0.42, C:0.25, G:0.05, T:0.28
Consensus pattern (30 bp):
TTACACTTTTACCCCCGAAAAACTCAAAAA
Found at i:22268310 original size:36 final size:36
Alignment explanation
Indices: 22268217--22268310 Score: 143
Period size: 36 Copynumber: 2.6 Consensus size: 36
22268207 TAGCCGGACT
* * *
22268217 CATCGTGTGCACCCCCACATCACTCACAGTTAATGC
1 CATCGTGTGCACCCCCACATCGCACACAGCTAATGC
22268253 CATCGTGTGCACCCCCACATCGCACACAGCTAATGC
1 CATCGTGTGCACCCCCACATCGCACACAGCTAATGC
* *
22268289 GATCGTGTGCTCCCCCACATCG
1 CATCGTGTGCACCCCCACATCG
22268311 TGCACAGGTA
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 53 1.00
ACGTcount: A:0.22, C:0.40, G:0.17, T:0.20
Consensus pattern (36 bp):
CATCGTGTGCACCCCCACATCGCACACAGCTAATGC
Found at i:22268317 original size:36 final size:35
Alignment explanation
Indices: 22268217--22268322 Score: 131
Period size: 36 Copynumber: 2.9 Consensus size: 35
22268207 TAGCCGGACT
* *
22268217 CATCGTGTGCACCCCCACATCACTCACAGTTAATGC
1 CATCGTGTGCACCCCCACATC-GTCACAGCTAATGC
*
22268253 CATCGTGTGCACCCCCACATCGCACACAGCTAATGC
1 CATCGTGTGCACCCCCACATCG-TCACAGCTAATGC
* * *
22268289 GATCGTGTGCTCCCCCACATCGTGCACAGGTAAT
1 CATCGTGTGCACCCCCACATCGT-CACAGCTAAT
22268323 ATCATCATTA
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
36 61 1.00
ACGTcount: A:0.24, C:0.38, G:0.18, T:0.21
Consensus pattern (35 bp):
CATCGTGTGCACCCCCACATCGTCACAGCTAATGC
Found at i:22271022 original size:2 final size:2
Alignment explanation
Indices: 22271015--22271060 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
22271005 NNNNNNATAG
*
22271015 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
22271057 TA TA
1 TA TA
22271061 CCCATCATCA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:22271136 original size:43 final size:42
Alignment explanation
Indices: 22271088--22271210 Score: 149
Period size: 43 Copynumber: 2.9 Consensus size: 42
22271078 CACCATCCCA
* **
22271088 TCATCACCATCTCATGCGCACTCCCTACTCGCACAT-GGCTAGG
1 TCATCACCAT-TTATGCGCACTCCCTACTCGCACATAATC-AGG
*
22271131 TCATCACCGATTTATGCGCACTCCCTACTCGCACATAATCGGG
1 TCATCACC-ATTTATGCGCACTCCCTACTCGCACATAATCAGG
**
22271174 TCATCATCTGTTTATGCGCACTCCCTACTCGCACATA
1 TCATCA-CCATTTATGCGCACTCCCTACTCGCACATA
22271211 GCCGAGTCCA
Statistics
Matches: 71, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
43 67 0.94
44 4 0.06
ACGTcount: A:0.22, C:0.37, G:0.15, T:0.27
Consensus pattern (42 bp):
TCATCACCATTTATGCGCACTCCCTACTCGCACATAATCAGG
Found at i:22272041 original size:19 final size:19
Alignment explanation
Indices: 22271998--22272041 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
22271988 GAGAACAAGA
*
22271998 AGAAGAAGCTGCTGGAAAT
1 AGAAGAAGCTGCTGGAAAG
**
22272017 TCAAGAAGCTGCTGGAAAG
1 AGAAGAAGCTGCTGGAAAG
22272036 AGAAGA
1 AGAAGA
22272042 TATTTATAGC
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.43, C:0.11, G:0.32, T:0.14
Consensus pattern (19 bp):
AGAAGAAGCTGCTGGAAAG
Found at i:22273610 original size:33 final size:31
Alignment explanation
Indices: 22273552--22273638 Score: 99
Period size: 28 Copynumber: 2.8 Consensus size: 31
22273542 AAATTGAGAC
*
22273552 AAATATATTTTTATCTAGATTAAGACAAAAA
1 AAATATATTTTTATCTAAATTAAGACAAAAA
*
22273583 AAATATTTTTCTTATCTTAAATTAAGAC---AA
1 AAATATATTT-TTATC-TAAATTAAGACAAAAA
* *
22273613 ACATATATTTTTGTCTAAATTAAGAC
1 AAATATATTTTTATCTAAATTAAGAC
22273639 CAAACATGTT
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
28 11 0.22
29 4 0.08
30 10 0.20
31 9 0.18
32 5 0.10
33 10 0.20
ACGTcount: A:0.45, C:0.09, G:0.06, T:0.40
Consensus pattern (31 bp):
AAATATATTTTTATCTAAATTAAGACAAAAA
Found at i:22273659 original size:29 final size:29
Alignment explanation
Indices: 22273600--22273667 Score: 86
Period size: 29 Copynumber: 2.4 Consensus size: 29
22273590 TTTCTTATCT
*
22273600 TAAATTAAGA-CAAACATATATTTTTGTC
1 TAAATTAAGACCAAACATATATTTTTGCC
*
22273628 TAAATTAAGACCAAACATGT-TTTCTTGCC
1 TAAATTAAGACCAAACATATATTT-TTGCC
*
22273657 TAAAATAAGAC
1 TAAATTAAGAC
22273668 AAATATTTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
28 13 0.37
29 22 0.63
ACGTcount: A:0.43, C:0.15, G:0.09, T:0.34
Consensus pattern (29 bp):
TAAATTAAGACCAAACATATATTTTTGCC
Found at i:22282336 original size:42 final size:42
Alignment explanation
Indices: 22282267--22282351 Score: 125
Period size: 42 Copynumber: 2.0 Consensus size: 42
22282257 GTGATAATTA
** *
22282267 TGACCCAGCCATGTGCGGTGTAGGAGTGCACATTAGCTGTGC
1 TGACCCAGCCATGTGCAATGTAGGAGTGCACATGAGCTGTGC
* *
22282309 TGACCCAGCCATGTGCAATGTATGAGTGCATATGAGCTGTGC
1 TGACCCAGCCATGTGCAATGTAGGAGTGCACATGAGCTGTGC
22282351 T
1 T
22282352 AACTCGGCTA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.21, C:0.22, G:0.31, T:0.26
Consensus pattern (42 bp):
TGACCCAGCCATGTGCAATGTAGGAGTGCACATGAGCTGTGC
Found at i:22282365 original size:42 final size:42
Alignment explanation
Indices: 22282269--22282389 Score: 118
Period size: 42 Copynumber: 2.9 Consensus size: 42
22282259 GATAATTATG
** * *
22282269 ACCCAGCCATGTGCGGTGTAGGAGTGCACATTAGCTGTGCTG
1 ACCCAGCCATGTGCAATGTAGGAGTGCACATGAGCTGTGCTA
* *
22282311 ACCCAGCCATGTGCAATGTATGAGTGCATATGAGCTGTGCTA
1 ACCCAGCCATGTGCAATGTAGGAGTGCACATGAGCTGTGCTA
* * * ** *
22282353 ACTCGGCTATGTGCGGTGT-GGTAGTGCACATAAGCTG
1 ACCCAGCCATGTGCAATGTAGG-AGTGCACATGAGCTG
22282390 AGACAGAGTT
Statistics
Matches: 64, Mismatches: 14, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
41 1 0.02
42 63 0.98
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.26
Consensus pattern (42 bp):
ACCCAGCCATGTGCAATGTAGGAGTGCACATGAGCTGTGCTA
Found at i:22285978 original size:71 final size:71
Alignment explanation
Indices: 22285838--22285971 Score: 268
Period size: 71 Copynumber: 1.9 Consensus size: 71
22285828 TCTATCTTCA
22285838 TGGGCTTTACTCCTAAACTTGGAGGATGAGATGTTACCTTTCTTAGATGATTTTCCCTTCTCTCC
1 TGGGCTTTACTCCTAAACTTGGAGGATGAGATGTTACCTTTCTTAGATGATTTTCCCTTCTCTCC
22285903 CTTCTC
66 CTTCTC
22285909 TGGGCTTTACTCCTAAACTTGGAGGATGAGATGTTACCTTTCTTAGATGATTTTCCCTTCTCT
1 TGGGCTTTACTCCTAAACTTGGAGGATGAGATGTTACCTTTCTTAGATGATTTTCCCTTCTCT
22285972 TTCTTCTTCT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 63 1.00
ACGTcount: A:0.18, C:0.23, G:0.18, T:0.41
Consensus pattern (71 bp):
TGGGCTTTACTCCTAAACTTGGAGGATGAGATGTTACCTTTCTTAGATGATTTTCCCTTCTCTCC
CTTCTC
Found at i:22286495 original size:21 final size:21
Alignment explanation
Indices: 22286469--22286508 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
22286459 AGACAGAATG
*
22286469 CTCTTAGTTGACTAAGTGCGT
1 CTCTTAGTAGACTAAGTGCGT
22286490 CTCTTAGTAGACTAAGTGC
1 CTCTTAGTAGACTAAGTGC
22286509 CTATTGTCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.35
Consensus pattern (21 bp):
CTCTTAGTAGACTAAGTGCGT
Found at i:22293807 original size:11 final size:11
Alignment explanation
Indices: 22293791--22293818 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
22293781 CACTATAGTT
22293791 TTTAAAACAAC
1 TTTAAAACAAC
22293802 TTTAAAACAAC
1 TTTAAAACAAC
22293813 TTTAAA
1 TTTAAA
22293819 CTCAAAACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.54, C:0.14, G:0.00, T:0.32
Consensus pattern (11 bp):
TTTAAAACAAC
Found at i:22299824 original size:21 final size:20
Alignment explanation
Indices: 22299767--22299824 Score: 53
Period size: 21 Copynumber: 2.8 Consensus size: 20
22299757 TTATGTTTTT
22299767 ATTTCCAATTCCAATTTTAGA
1 ATTTCCAATT-CAATTTTAGA
* * * * *
22299788 GTTTCAAAATCTATTTTTGA
1 ATTTCCAATTCAATTTTAGA
22299808 ATGTTCCAATTCAATTT
1 AT-TTCCAATTCAATTT
22299825 GCAGAAAATT
Statistics
Matches: 27, Mismatches: 9, Indels: 2
0.71 0.24 0.05
Matches are distributed among these distances:
20 9 0.33
21 18 0.67
ACGTcount: A:0.31, C:0.16, G:0.07, T:0.47
Consensus pattern (20 bp):
ATTTCCAATTCAATTTTAGA
Found at i:22302020 original size:73 final size:72
Alignment explanation
Indices: 22301913--22302104 Score: 219
Period size: 73 Copynumber: 2.6 Consensus size: 72
22301903 GCAGAATGCT
* * ***
22301913 CTTAGTCGACTAACTTATGTCTTAGTCGACTAAGTTGTTTCTGT-TTTTTGTTTCCA-ATTTCTG
1 CTTAGTCGACTAACTTATTTCTTGGTCGACTAAGTT-TTTCTGTCTTGAAG-TT-CAGATTTCTG
22301976 GCAGTAAGC-A
63 GCAGT-AGCTA
* *
22301986 CTTAGTCGACTAACTTATTTCTTGGTCGACTAAGTTTGTTCTATCTTGAAGTTCAGATTTTTGGC
1 CTTAGTCGACTAACTTATTTCTTGGTCGACTAAGTTT-TTCTGTCTTGAAGTTCAGATTTCTGGC
*
22302051 AGTAGCTT
65 AGTAGCTA
* *
22302059 CTTAGTTGACTAACTTATTCCTTGGTCGACTAAGTCTTTTCTGTCT
1 CTTAGTCGACTAACTTATTTCTTGGTCGACTAAGT-TTTTCTGTCT
22302105 CTCAATACTC
Statistics
Matches: 103, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
72 6 0.06
73 92 0.89
74 5 0.05
ACGTcount: A:0.20, C:0.18, G:0.18, T:0.44
Consensus pattern (72 bp):
CTTAGTCGACTAACTTATTTCTTGGTCGACTAAGTTTTTCTGTCTTGAAGTTCAGATTTCTGGCA
GTAGCTA
Found at i:22328547 original size:71 final size:70
Alignment explanation
Indices: 22328467--22328655 Score: 236
Period size: 71 Copynumber: 2.7 Consensus size: 70
22328457 TTAATTATTT
* * * * * * *
22328467 AATTTAATCAATTAGGCCCAATAACTTAATTAAATAATTTAATTAATTAAGCCTAATAG-TTTAA
1 AATTTAATCAATTAGGCCTAATGACTTAATTAAACAATTTAATCAACTAAGCCCAA-AGACTTAA
*
22328531 TTAAAT
65 TTAAAC
*
22328537 AATTTTAATCAATTAGGCCTAATGACTTAATTAAACAATTTTAATCAACTAGGCCCAAAGACTTA
1 AA-TTTAATCAATTAGGCCTAATGACTTAATTAAACAA-TTTAATCAACTAAGCCCAAAGACTTA
22328602 ATTAAAC
64 ATTAAAC
* *
22328609 AATTTAATTAATTAAGCCTAATGACTTAATTAAACAATTTTAATCAA
1 AATTTAATCAATTAGGCCTAATGACTTAATTAAACAA-TTTAATCAA
22328656 GTGCTTGAGA
Statistics
Matches: 105, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
70 2 0.02
71 77 0.73
72 26 0.25
ACGTcount: A:0.45, C:0.13, G:0.06, T:0.36
Consensus pattern (70 bp):
AATTTAATCAATTAGGCCTAATGACTTAATTAAACAATTTAATCAACTAAGCCCAAAGACTTAAT
TAAAC
Found at i:22328551 original size:36 final size:37
Alignment explanation
Indices: 22328469--22328655 Score: 235
Period size: 36 Copynumber: 5.2 Consensus size: 37
22328459 AATTATTTAA
* *
22328469 TTTAATCAATTAGGCCCAATA-ACTTAATTAAATAA-
1 TTTAATCAATTAGGCCTAATAGACTTAATTAAACAAT
* * * *
22328504 TTTAATTAATTAAGCCTAATAG-TTTAATTAAATAAT
1 TTTAATCAATTAGGCCTAATAGACTTAATTAAACAAT
22328540 TTTAATCAATTAGGCCTAAT-GACTTAATTAAACAAT
1 TTTAATCAATTAGGCCTAATAGACTTAATTAAACAAT
* *
22328576 TTTAATCAACTAGGCCCAA-AGACTTAATTAAACAA-
1 TTTAATCAATTAGGCCTAATAGACTTAATTAAACAAT
* *
22328611 TTTAATTAATTAAGCCTAAT-GACTTAATTAAACAAT
1 TTTAATCAATTAGGCCTAATAGACTTAATTAAACAAT
22328647 TTTAATCAA
1 TTTAATCAA
22328656 GTGCTTGAGA
Statistics
Matches: 131, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
35 61 0.47
36 70 0.53
ACGTcount: A:0.44, C:0.13, G:0.06, T:0.36
Consensus pattern (37 bp):
TTTAATCAATTAGGCCTAATAGACTTAATTAAACAAT
Found at i:22342342 original size:71 final size:70
Alignment explanation
Indices: 22342209--22342426 Score: 276
Period size: 71 Copynumber: 3.1 Consensus size: 70
22342199 TAAATTGTTT
* *
22342209 AATTAAATCA-TTGGGCCTAATTAATTAAATTGTTTAATTAAGTCATTGGGCCTAATTAATTAAA
1 AATTAAAT-AGTTGGGCCTAATTAATTAAATTGTTTAATTAAGTCATTGGGCCTAGTTGATTAAA
22342273 TTAAAC
65 TTAAAC
* * * *
22342279 AATTAACTTGTTGGGCCTAATTGATTATATTTGTTTAATTAAGTCATTGGGCCTAGTTGATTAAA
1 AATTAAATAGTTGGGCCTAATTAATTA-AATTGTTTAATTAAGTCATTGGGCCTAGTTGATT-AA
***
22342344 ATTATTT
64 ATTAAAC
* * * * *
22342351 AATTAAATAGTTGGGCTTAATTAATTAAATTGTTTAATTAAGTTATTAGGCTTAGTTGATTGAAT
1 AATTAAATAGTTGGGCCTAATTAATTAAATTGTTTAATTAAGTCATTGGGCCTAGTTGATTAAAT
22342416 TAAAC
66 TAAAC
22342421 AATTAA
1 AATTAA
22342427 GTTGATTAGG
Statistics
Matches: 124, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
70 34 0.27
71 61 0.49
72 29 0.23
ACGTcount: A:0.36, C:0.07, G:0.14, T:0.42
Consensus pattern (70 bp):
AATTAAATAGTTGGGCCTAATTAATTAAATTGTTTAATTAAGTCATTGGGCCTAGTTGATTAAAT
TAAAC
Found at i:22342404 original size:35 final size:35
Alignment explanation
Indices: 22342168--22342393 Score: 235
Period size: 35 Copynumber: 6.5 Consensus size: 35
22342158 CACTTGATTA
* * *
22342168 AAATTTTTTAATTAAG---TTGTGCCTAATTAACT
1 AAATTGTTTAATTAAGTCATTGGGCCTAATTAATT
*
22342200 AAATTGTTTAATTAAATCATTGGGCCTAATTAATT
1 AAATTGTTTAATTAAGTCATTGGGCCTAATTAATT
22342235 AAATTGTTTAATTAAGTCATTGGGCCTAATTAATT
1 AAATTGTTTAATTAAGTCATTGGGCCTAATTAATT
**** * ** *
22342270 AAATTAAACAATTAACTTGTTGGGCCTAATTGATT
1 AAATTGTTTAATTAAGTCATTGGGCCTAATTAATT
* * *
22342305 ATATTTGTTTAATTAAGTCATTGGGCCTAGTTGATT
1 A-AATTGTTTAATTAAGTCATTGGGCCTAATTAATT
* * *
22342341 AAAATTATTTAATTAAAT-AGTTGGGCTTAATTAATT
1 -AAATTGTTTAATTAAGTCA-TTGGGCCTAATTAATT
22342377 AAATTGTTTAATTAAGT
1 AAATTGTTTAATTAAGT
22342394 TATTAGGCTT
Statistics
Matches: 158, Mismatches: 30, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
32 14 0.09
35 92 0.58
36 51 0.32
37 1 0.01
ACGTcount: A:0.35, C:0.08, G:0.13, T:0.44
Consensus pattern (35 bp):
AAATTGTTTAATTAAGTCATTGGGCCTAATTAATT
Found at i:22345950 original size:21 final size:22
Alignment explanation
Indices: 22345910--22345950 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
22345900 TCATTGGCCC
*
22345910 GTTTTTAAAATTTCATCCATTT
1 GTTTCTAAAATTTCATCCATTT
*
22345932 GTTTCTAAATTTTCA-CCAT
1 GTTTCTAAAATTTCATCCAT
22345951 ACACTTGTCC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.27, C:0.17, G:0.05, T:0.51
Consensus pattern (22 bp):
GTTTCTAAAATTTCATCCATTT
Found at i:22348125 original size:135 final size:134
Alignment explanation
Indices: 22347883--22348151 Score: 520
Period size: 135 Copynumber: 2.0 Consensus size: 134
22347873 TCATATTGAG
22347883 CATGTATACTTTATATGTTCATAACTAGAGTAGAAGTGTCCATAACCTTCTTAGTATAACAGCAT
1 CATGTATACTTTATATGTTCATAACTAGAGTAGAAGTGTCCATAACCTTCTTAGTATAACAGCAT
22347948 GTGATAGAGTTAATTTTATGCAATATATTAAATGCTATGCATTCTAATCAAATGAGACCTTAATA
66 GTGATAGAGTTAATTTTATGCAATATATTAAATGCTATGCATTCTAATCAAATGAGACCTTAATA
22348013 AAAC
131 AAAC
*
22348017 NCATGTTTACTTTATATGTTCATAACTAGAGTAGAAGTGTCCATAACCTTCTTAGTATAACAGCA
1 -CATGTATACTTTATATGTTCATAACTAGAGTAGAAGTGTCCATAACCTTCTTAGTATAACAGCA
22348082 TGTGATAGAGTTAATTTTATGCAATATATTAAATGCTATGCATTCTAATCAAATGAGACCTTAAT
65 TGTGATAGAGTTAATTTTATGCAATATATTAAATGCTATGCATTCTAATCAAATGAGACCTTAAT
22348147 AAAAC
130 AAAAC
22348152 GAAAAGGATA
Statistics
Matches: 133, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
135 133 1.00
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.35
Consensus pattern (134 bp):
CATGTATACTTTATATGTTCATAACTAGAGTAGAAGTGTCCATAACCTTCTTAGTATAACAGCAT
GTGATAGAGTTAATTTTATGCAATATATTAAATGCTATGCATTCTAATCAAATGAGACCTTAATA
AAAC
Found at i:22354609 original size:37 final size:37
Alignment explanation
Indices: 22354568--22354645 Score: 131
Period size: 37 Copynumber: 2.1 Consensus size: 37
22354558 GTTGTGTGAG
*
22354568 GATGTT-GAAGTGTGCGAGTAGGGAGTGCACACATGAT
1 GATGTTAG-AGTGTGCGAGTAGAGAGTGCACACATGAT
22354605 GATGTTAGAGTGTGCGAGTAGAGAGTGCACACATGAT
1 GATGTTAGAGTGTGCGAGTAGAGAGTGCACACATGAT
22354642 GATG
1 GATG
22354646 AATGCATATG
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
37 38 0.97
38 1 0.03
ACGTcount: A:0.28, C:0.10, G:0.37, T:0.24
Consensus pattern (37 bp):
GATGTTAGAGTGTGCGAGTAGAGAGTGCACACATGAT
Found at i:22361151 original size:35 final size:35
Alignment explanation
Indices: 22361087--22361301 Score: 163
Period size: 36 Copynumber: 6.1 Consensus size: 35
22361077 CACTTGATTA
* * *
22361087 AAATTGTTTAATAAAG---TTGTGCCTAATTAACT
1 AAATTGTTTAATTAAGTCATTGGGCCTAATTAATT
* *
22361119 ACATTGTTTAATTAAATCATTGGGCCTAATTAATT
1 AAATTGTTTAATTAAGTCATTGGGCCTAATTAATT
**** * * *
22361154 AAATTAAACAATTAAGTTATTGAGCCTAATTGATT
1 AAATTGTTTAATTAAGTCATTGGGCCTAATTAATT
* *
22361189 AAATTTGTTTAATTAAGTCATTGTGTG-C-AGTTGATT
1 AAA-TTGTTTAATTAAGTCATTG-G-GCCTAATTAATT
* *
22361225 AAAATTGTTTAATTAAAT-AGTTGGGCTTAATTAATT
1 -AAATTGTTTAATTAAGTCA-TTGGGCCTAATTAATT
* * *
22361261 AAATTGTTTTGATTAAGTTATTGGGCCTAATTGATT
1 AAATTG-TTTAATTAAGTCATTGGGCCTAATTAATT
22361297 AAATT
1 AAATT
22361302 AAACAATTAA
Statistics
Matches: 142, Mismatches: 29, Indels: 20
0.74 0.15 0.10
Matches are distributed among these distances:
32 13 0.09
34 1 0.01
35 51 0.36
36 71 0.50
37 5 0.04
38 1 0.01
ACGTcount: A:0.35, C:0.07, G:0.14, T:0.43
Consensus pattern (35 bp):
AAATTGTTTAATTAAGTCATTGGGCCTAATTAATT
Found at i:22361295 original size:72 final size:72
Alignment explanation
Indices: 22361080--22361299 Score: 197
Period size: 72 Copynumber: 3.1 Consensus size: 72
22361070 TCTCAAGCAC
* * * *
22361080 TTGATTAAAATTGTTTAA-T-AA-AGTTGTGCCTAATTAACTACATTG-TTTAATTAAATCATTG
1 TTGATTAAAATTGTTTAATTAAATAGTTGAGCCTAATTAATTAAATTGTTTTAATTAAGTCATTG
22361141 GGCCTAA
66 GGCCTAA
* **** * *
22361148 TTAATT-AAATTAAACAATTAAGTTA-TTGAGCCTAATTGATTAAATT-TGTTTAATTAAGTCAT
1 TTGATTAAAATTGTTTAATTAA-ATAGTTGAGCCTAATTAATTAAATTGT-TTTAATTAAGTCAT
*
22361210 TGTGTG-C-AG
64 TG-G-GCCTAA
* * * *
22361219 TTGATTAAAATTGTTTAATTAAATAGTTGGGCTTAATTAATTAAATTGTTTTGATTAAGTTATTG
1 TTGATTAAAATTGTTTAATTAAATAGTTGAGCCTAATTAATTAAATTGTTTTAATTAAGTCATTG
22361284 GGCCTAA
66 GGCCTAA
22361291 TTGATTAAA
1 TTGATTAAA
22361300 TTAAACAATT
Statistics
Matches: 115, Mismatches: 24, Indels: 22
0.71 0.15 0.14
Matches are distributed among these distances:
67 7 0.06
68 6 0.05
69 1 0.01
70 18 0.16
71 26 0.23
72 55 0.48
73 2 0.02
ACGTcount: A:0.35, C:0.07, G:0.15, T:0.43
Consensus pattern (72 bp):
TTGATTAAAATTGTTTAATTAAATAGTTGAGCCTAATTAATTAAATTGTTTTAATTAAGTCATTG
GGCCTAA
Found at i:22365867 original size:63 final size:63
Alignment explanation
Indices: 22365768--22365947 Score: 306
Period size: 63 Copynumber: 2.9 Consensus size: 63
22365758 AATTGATGCA
*
22365768 ACCGTGCATGTGTGGAGTGGGAAGTGCAATGCCAGTTGAATGACAAAGGATGTGATAATTACG
1 ACCGTGCATGTGCGGAGTGGGAAGTGCAATGCCAGTTGAATGACAAAGGATGTGATAATTACG
* * *
22365831 ACCGTGCATGTGCAGAGGGGGAAGTTCAATGCCAGTTGAATGACAAAGGATGTGATAATTACG
1 ACCGTGCATGTGCGGAGTGGGAAGTGCAATGCCAGTTGAATGACAAAGGATGTGATAATTACG
* *
22365894 ACCGTGCATGTGCGGAGTGGGAAGTGCAATGCTAGTTGAATGACAAAGGTTGTG
1 ACCGTGCATGTGCGGAGTGGGAAGTGCAATGCCAGTTGAATGACAAAGGATGTG
22365948 GGTACGGCGA
Statistics
Matches: 108, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
63 108 1.00
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.23
Consensus pattern (63 bp):
ACCGTGCATGTGCGGAGTGGGAAGTGCAATGCCAGTTGAATGACAAAGGATGTGATAATTACG
Found at i:22368382 original size:27 final size:29
Alignment explanation
Indices: 22368347--22368401 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 29
22368337 CGAAGTATAG
*
22368347 GGGCAAAATC-GTAATTTTTTCACCCCAA
1 GGGCAAAATCGGTAAATTTTTCACCCCAA
*
22368375 GGGC-AAATCGGTAAATTTTTCGCCCCA
1 GGGCAAAATCGGTAAATTTTTCACCCCA
22368402 TCACTTGTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 5 0.21
28 19 0.79
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (29 bp):
GGGCAAAATCGGTAAATTTTTCACCCCAA
Found at i:22376654 original size:62 final size:62
Alignment explanation
Indices: 22376561--22376830 Score: 319
Period size: 62 Copynumber: 4.4 Consensus size: 62
22376551 TTGCAACGAG
* *** * * * *
22376561 AATCAATTTGGCTACGATGAGAACAGTGACTTTCAAGACAGAAAGTTTCTCATCGCGGTGAA
1 AATCAATTTGGCTGCGGCAAGAACAGCGACTTCCAAGACAGAAAGTTTCTCACCGCGGCGAA
* * *
22376623 AATCAATTTGGCTGTGGCAAGAATAGGGACTTCCAAGACAGAAAGTTTCTCACCGCGGCGAA
1 AATCAATTTGGCTGCGGCAAGAACAGCGACTTCCAAGACAGAAAGTTTCTCACCGCGGCGAA
* * * * *
22376685 AATCAATTTGGCTGCAGCGAGAACAGTGACTTCCAAGATAGAAATTTTCTCACCGTC-GCGAA
1 AATCAATTTGGCTGCGGCAAGAACAGCGACTTCCAAGACAGAAAGTTTCTCACCG-CGGCGAA
* * * *
22376747 AATCAATTTGGCTGCGGCGAGAACAACGACTTCCAAGACAAAAAGTTTCTCACCGTC-TCGAA
1 AATCAATTTGGCTGCGGCAAGAACAGCGACTTCCAAGACAGAAAGTTTCTCACCG-CGGCGAA
*
22376809 AATCAATTTGGCTGTGGCAAGA
1 AATCAATTTGGCTGCGGCAAGA
22376831 GCAGTGCAAA
Statistics
Matches: 181, Mismatches: 26, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
62 180 0.99
63 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.23
Consensus pattern (62 bp):
AATCAATTTGGCTGCGGCAAGAACAGCGACTTCCAAGACAGAAAGTTTCTCACCGCGGCGAA
Found at i:22377199 original size:35 final size:36
Alignment explanation
Indices: 22377116--22377205 Score: 101
Period size: 36 Copynumber: 2.5 Consensus size: 36
22377106 TCAACCCAGC
* * *
22377116 TCATGTGCACTCCCACACCCCACATAGCTAATGTCA
1 TCATGTGCACTCCCACACCACACACAGCTAATATCA
* * *
22377152 TCATGTGTACTCCCACACTACACACGGC-AATATCA
1 TCATGTGCACTCCCACACCACACACAGCTAATATCA
* *
22377187 TCATGCGCACTCCTACACC
1 TCATGTGCACTCCCACACC
22377206 GCACTTCACC
Statistics
Matches: 44, Mismatches: 10, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
35 21 0.48
36 23 0.52
ACGTcount: A:0.28, C:0.39, G:0.11, T:0.22
Consensus pattern (36 bp):
TCATGTGCACTCCCACACCACACACAGCTAATATCA
Found at i:22378025 original size:16 final size:17
Alignment explanation
Indices: 22377998--22378029 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
22377988 TTTGGTACCC
22377998 AAGAAGGTAAGAAAAGG
1 AAGAAGGTAAGAAAAGG
22378015 AAGAA-GTAAGAAAAG
1 AAGAAGGTAAGAAAAG
22378030 AAAGGGAAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.62, C:0.00, G:0.31, T:0.06
Consensus pattern (17 bp):
AAGAAGGTAAGAAAAGG
Found at i:22378031 original size:21 final size:20
Alignment explanation
Indices: 22378006--22378054 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
22377996 CCAAGAAGGT
22378006 AAGAAAAGGAA-GAAGTAAGAA
1 AAGAAAAGGAAGGAA--AAGAA
*
22378027 AAGAAAGGGAAGGAAAAGAA
1 AAGAAAAGGAAGGAAAAGAA
22378047 AATGAAAA
1 AA-GAAAA
22378055 AAAAATTGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 7 0.29
21 14 0.58
22 3 0.12
ACGTcount: A:0.67, C:0.00, G:0.29, T:0.04
Consensus pattern (20 bp):
AAGAAAAGGAAGGAAAAGAA
Found at i:22392660 original size:19 final size:19
Alignment explanation
Indices: 22392633--22392669 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
22392623 TCAAATTATC
*
22392633 AACTGGTCGAGGGTTTCTT
1 AACTAGTCGAGGGTTTCTT
22392652 AACTAGTCGAGGGTTTCT
1 AACTAGTCGAGGGTTTCT
22392670 CACCAAACCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.19, C:0.16, G:0.30, T:0.35
Consensus pattern (19 bp):
AACTAGTCGAGGGTTTCTT
Found at i:22393263 original size:44 final size:44
Alignment explanation
Indices: 22393129--22393305 Score: 231
Period size: 42 Copynumber: 4.1 Consensus size: 44
22393119 ACCATCCCAC
*
22393129 CATCATCAGCTCATGTGCACTCCCCAC-TCACACATAGCTGGGT
1 CATCATCAGCTCATGTGCACTCCCCACATCGCACATAGCTGGGT
* * *
22393172 CATCATTAGCTCATGTGCACT--CCATATCGCACATAGTTGGGT
1 CATCATCAGCTCATGTGCACTCCCCACATCGCACATAGCTGGGT
* *
22393214 AATCATCAGCTCATGTGCACTCCCCCACAT-GCACATAGCTAGGT
1 CATCATCAGCTCATGTGCACT-CCCCACATCGCACATAGCTGGGT
* *
22393258 CATCATTAGCTCATGTGCACT-CCCACA-CACACATAGCTGGGT
1 CATCATCAGCTCATGTGCACTCCCCACATCGCACATAGCTGGGT
22393300 CATCAT
1 CATCAT
22393306 TATCACATAA
Statistics
Matches: 116, Mismatches: 13, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
41 3 0.03
42 57 0.49
43 20 0.17
44 31 0.27
45 5 0.04
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.25
Consensus pattern (44 bp):
CATCATCAGCTCATGTGCACTCCCCACATCGCACATAGCTGGGT
Found at i:22393291 original size:86 final size:85
Alignment explanation
Indices: 22393130--22393305 Score: 257
Period size: 86 Copynumber: 2.1 Consensus size: 85
22393120 CCATCCCACC
*
22393130 ATCATCAGCTCATGTGCACTCCCCACTCACACATAGCTGGGTCATCATTAGCTCATGTGCACTCC
1 ATCATCAGCTCATGTGCACTCCCCACTCACACATAGCTAGGTCATCATTAGCTCATGTGCACTCC
* * *
22393195 ATATCGCACATAGTTGGGTA
66 ACATCACACATAGCTGGGTA
*
22393215 ATCATCAGCTCATGTGCACTCCCCCACAT-GCACATAGCTAGGTCATCATTAGCTCATGTGCACT
1 ATCATCAGCTCATGTGCACT-CCCCAC-TCACACATAGCTAGGTCATCATTAGCTCATGTGCACT
*
22393279 CCCACA-CACACATAGCTGGGTC
64 -CCACATCACACATAGCTGGGTA
22393301 ATCAT
1 ATCAT
22393306 TATCACATAA
Statistics
Matches: 82, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
85 20 0.24
86 57 0.70
87 5 0.06
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (85 bp):
ATCATCAGCTCATGTGCACTCCCCACTCACACATAGCTAGGTCATCATTAGCTCATGTGCACTCC
ACATCACACATAGCTGGGTA
Found at i:22397321 original size:11 final size:11
Alignment explanation
Indices: 22397288--22397322 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
22397278 CCTAGGGTTC
22397288 TTGTTCTTCCT
1 TTGTTCTTCCT
22397299 TT-TTCTTCCT
1 TTGTTCTTCCT
*
22397309 TTGTTCTTGCT
1 TTGTTCTTCCT
22397320 TTG
1 TTG
22397323 GTCGACCATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 10 0.45
11 12 0.55
ACGTcount: A:0.00, C:0.23, G:0.11, T:0.66
Consensus pattern (11 bp):
TTGTTCTTCCT
Found at i:22401943 original size:18 final size:16
Alignment explanation
Indices: 22401922--22401969 Score: 62
Period size: 18 Copynumber: 2.9 Consensus size: 16
22401912 AATCGATTTG
22401922 AAAGAAAGAAGAAAAGA
1 AAAGAAAGAA-AAAAGA
22401939 TAAAGAAAGAAAAGAAGA
1 -AAAGAAAGAAAA-AAGA
22401957 AAA-AAAGAAAAAA
1 AAAGAAAGAAAAAA
22401970 AGACAAAGGA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
15 2 0.07
16 8 0.28
17 5 0.17
18 14 0.48
ACGTcount: A:0.79, C:0.00, G:0.19, T:0.02
Consensus pattern (16 bp):
AAAGAAAGAAAAAAGA
Found at i:22401950 original size:15 final size:16
Alignment explanation
Indices: 22401923--22401972 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
22401913 ATCGATTTGA
22401923 AAGAAAG-AAGAAAAG
1 AAGAAAGAAAGAAAAG
*
22401938 -ATAAAGAAAGAAAAG
1 AAGAAAGAAAGAAAAG
* *
22401953 AAGAAAAAAAGAAAAA
1 AAGAAAGAAAGAAAAG
22401969 AAGA
1 AAGA
22401973 CAAAGGAGGG
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
14 5 0.17
15 8 0.28
16 16 0.55
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (16 bp):
AAGAAAGAAAGAAAAG
Found at i:22403209 original size:25 final size:25
Alignment explanation
Indices: 22403178--22403245 Score: 100
Period size: 25 Copynumber: 2.7 Consensus size: 25
22403168 GGTCTGTGAT
*
22403178 TATACGTGGCAAGGCCATGGGATTA
1 TATACGTGGCAAGGCCATGGGATGA
*
22403203 TATACGTGGCAAGGCCACGGGATGA
1 TATACGTGGCAAGGCCATGGGATGA
* *
22403228 TATACATGGCTAGGCCAT
1 TATACGTGGCAAGGCCAT
22403246 AAGTGATATA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.22
Consensus pattern (25 bp):
TATACGTGGCAAGGCCATGGGATGA
Found at i:22404985 original size:37 final size:37
Alignment explanation
Indices: 22404938--22405056 Score: 170
Period size: 37 Copynumber: 3.2 Consensus size: 37
22404928 AATACAATAT
*
22404938 CATCATCATGTGTGCACTCCTTACTCACACTCTTCAA
1 CATCATCATGTGTGCACTCCCTACTCACACTCTTCAA
*
22404975 CATCATCATGTGTGCACTCCCTACTCGCACACTC-T-AT
1 CATCATCATGTGTGCACTCCCTACT--CACACTCTTCAA
* *
22405012 CATCATCATGTGTGCACTCCCTACTCGCACACTTCAA
1 CATCATCATGTGTGCACTCCCTACTCACACTCTTCAA
22405049 CATCATCA
1 CATCATCA
22405057 CACAACATTA
Statistics
Matches: 73, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
35 5 0.07
36 1 0.01
37 59 0.81
38 1 0.01
39 7 0.10
ACGTcount: A:0.24, C:0.37, G:0.09, T:0.29
Consensus pattern (37 bp):
CATCATCATGTGTGCACTCCCTACTCACACTCTTCAA
Found at i:22422869 original size:18 final size:19
Alignment explanation
Indices: 22422846--22422882 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
22422836 CCGAGAGTTT
*
22422846 CTCGCTGTAGCGA-AATTC
1 CTCGCTGCAGCGAGAATTC
22422864 CTCGCTGCAGCGAGAATTC
1 CTCGCTGCAGCGAGAATTC
22422883 TTTTTCGTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.22, C:0.30, G:0.24, T:0.24
Consensus pattern (19 bp):
CTCGCTGCAGCGAGAATTC
Found at i:22426533 original size:27 final size:25
Alignment explanation
Indices: 22426493--22426543 Score: 66
Period size: 27 Copynumber: 2.0 Consensus size: 25
22426483 CTTGGTTGAT
* *
22426493 TTTTTAAAAGAAAAATAGCCATTAC
1 TTTTTAAAAGAAAAAGAGACATTAC
22426518 TTTTTAAGAAGAAAAAAGAGACATTA
1 TTTTTAA-AAG-AAAAAGAGACATTA
22426544 TCAATTACCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 7 0.32
26 3 0.14
27 12 0.55
ACGTcount: A:0.51, C:0.08, G:0.12, T:0.29
Consensus pattern (25 bp):
TTTTTAAAAGAAAAAGAGACATTAC
Found at i:22430390 original size:21 final size:21
Alignment explanation
Indices: 22430362--22430441 Score: 74
Period size: 21 Copynumber: 3.9 Consensus size: 21
22430352 TGTATTCTAT
*
22430362 TTCA-AATGTATCGATACATG
1 TTCATAATGTATCAATACATG
* *
22430382 TTCATAATGTATCGATATAT-
1 TTCATAATGTATCAATACATG
* * * *
22430402 ATCGTCATGTATCAATAGATG
1 TTCATAATGTATCAATACATG
*
22430423 TTCATAATGCATCAATACA
1 TTCATAATGTATCAATACA
22430442 ATTTTTGTAA
Statistics
Matches: 47, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
20 19 0.40
21 28 0.60
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.36
Consensus pattern (21 bp):
TTCATAATGTATCAATACATG
Found at i:22433203 original size:37 final size:39
Alignment explanation
Indices: 22433136--22433239 Score: 113
Period size: 39 Copynumber: 2.7 Consensus size: 39
22433126 ATAGTGCTCG
* * **
22433136 TGTGCATGATGTGGGGGGATGTACACGATGGCATTGA-T-
1 TGTGCACGATGT-GGGGGATGTACATGATGGCACCGACTA
* **
22433174 TGTGCACGATGTGGGGGATGCACATGATGGTGCCGACTA
1 TGTGCACGATGTGGGGGATGTACATGATGGCACCGACTA
*
22433213 TGTGCACAATGTGGGGGATGTACATGA
1 TGTGCACGATGTGGGGGATGTACATGA
22433240 GTCGGGAGTG
Statistics
Matches: 55, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
37 18 0.33
38 12 0.22
39 25 0.45
ACGTcount: A:0.22, C:0.13, G:0.38, T:0.26
Consensus pattern (39 bp):
TGTGCACGATGTGGGGGATGTACATGATGGCACCGACTA
Found at i:22440879 original size:31 final size:29
Alignment explanation
Indices: 22440812--22440868 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
22440802 AAATATTTAT
*
22440812 AATACCCACAATAGCTAAACAAGATATAC
1 AATATCCACAATAGCTAAACAAGATATAC
* *
22440841 AATATCCACAGTAGCTAAGCAAGATATA
1 AATATCCACAATAGCTAAACAAGATATA
22440869 TTGAATATCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.49, C:0.21, G:0.11, T:0.19
Consensus pattern (29 bp):
AATATCCACAATAGCTAAACAAGATATAC
Found at i:22443354 original size:19 final size:19
Alignment explanation
Indices: 22443326--22443362 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
22443316 GTTTAATGCG
* *
22443326 TTATGTTTAAATGCTTATT
1 TTATGATTAAATGATTATT
22443345 TTATGATTAAATGATTAT
1 TTATGATTAAATGATTAT
22443363 CAAAATGTTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.32, C:0.03, G:0.11, T:0.54
Consensus pattern (19 bp):
TTATGATTAAATGATTATT
Found at i:22449559 original size:67 final size:67
Alignment explanation
Indices: 22449461--22449615 Score: 170
Period size: 67 Copynumber: 2.3 Consensus size: 67
22449451 CTCCATGGAC
* * ** * * *
22449461 GGCATCACAATCCTCGTCTAGGGCAATATCCCAATGGACGGCATCACCCGA-AGTATTCTCCA-T
1 GGCATCACAATCATCATCCGGGGCAACATCCCAAAGGACGGCATCA-CCGAGAGTATTCTCCACA
22449524 GAGT
65 G-GT
* * * *
22449528 GGCATCACAATCATCATCCGGGGCAGCATCCCAAAGGATGGTATCACCTAGAGTATTCTCCACAG
1 GGCATCACAATCATCATCCGGGGCAACATCCCAAAGGACGGCATCACCGAGAGTATTCTCCACAG
22449593 GT
66 GT
*
22449595 TGCATCACAATCATCATCCGG
1 GGCATCACAATCATCATCCGG
22449616 AGTAATCTCT
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
66 3 0.04
67 70 0.95
68 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (67 bp):
GGCATCACAATCATCATCCGGGGCAACATCCCAAAGGACGGCATCACCGAGAGTATTCTCCACAG
GT
Found at i:22451170 original size:29 final size:30
Alignment explanation
Indices: 22451126--22451182 Score: 82
Period size: 29 Copynumber: 1.9 Consensus size: 30
22451116 GGCCAGTGCT
*
22451126 ATTATTTAGCCCTAAATTT-TTCTTCACGA
1 ATTATTTAGCCCTAAATTTCTGCTTCACGA
22451155 ATTATTTA-CCCTTAAATTTCTGCTTCAC
1 ATTATTTAGCCC-TAAATTTCTGCTTCAC
22451183 AAGATTGATC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 3 0.12
29 15 0.60
30 7 0.28
ACGTcount: A:0.26, C:0.23, G:0.05, T:0.46
Consensus pattern (30 bp):
ATTATTTAGCCCTAAATTTCTGCTTCACGA
Found at i:22463844 original size:28 final size:27
Alignment explanation
Indices: 22463812--22463989 Score: 189
Period size: 27 Copynumber: 6.5 Consensus size: 27
22463802 TGTAACAACT
* ** *
22463812 TTTTCATCATGGTGTGTAATAACTAAAA
1 TTTTCAACATGGCATGTAACAACT-AAA
*
22463840 TTTTCAACATGGCATGTAACAACTAGA
1 TTTTCAACATGGCATGTAACAACTAAA
* * *
22463867 TCTTCAACATGGCTTGTAACAACTACAT
1 TTTTCAACATGGCATGTAACAACTA-AA
22463895 TTTTCAACATGGCATGTAACAACTAAA
1 TTTTCAACATGGCATGTAACAACTAAA
22463922 TTTTCCAA-ATGGCATGTAACAACTAAA
1 TTTT-CAACATGGCATGTAACAACTAAA
* * *
22463949 TCTTT-AATATGGCTTGTAACAACTACAT
1 T-TTTCAACATGGCATGTAACAACTA-AA
*
22463977 TTTTCAATATGGC
1 TTTTCAACATGGC
22463990 GTGTGATAAA
Statistics
Matches: 130, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
26 2 0.02
27 69 0.53
28 59 0.45
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.34
Consensus pattern (27 bp):
TTTTCAACATGGCATGTAACAACTAAA
Found at i:22463891 original size:55 final size:54
Alignment explanation
Indices: 22463797--22463989 Score: 200
Period size: 55 Copynumber: 3.6 Consensus size: 54
22463787 AATTATGACG
* *
22463797 TGGCATGTAACAACT--TTTTCATCATGG-TGTGTAATAACTAAAATTTTCAACA
1 TGGCATGTAACAACTAATTTTCAACATGGCT-TGTAACAACTAAAATTTTCAACA
* * *
22463849 TGGCATGTAACAACTAGATCTTCAACATGGCTTGTAACAACTACATTTTTCAACA
1 TGGCATGTAACAACTA-ATTTTCAACATGGCTTGTAACAACTAAAATTTTCAACA
* *
22463904 TGGCATGTAACAACTAAATTTTCCAA-ATGGCATGTAACAACT-AAATCTTT-AATA
1 TGGCATGTAACAACT-AATTTT-CAACATGGCTTGTAACAACTAAAAT-TTTCAACA
* *
22463958 TGGCTTGTAACAACTACATTTTTCAATATGGC
1 TGGCATGTAACAACTA-A-TTTTCAACATGGC
22463990 GTGTGATAAA
Statistics
Matches: 120, Mismatches: 11, Indels: 17
0.81 0.07 0.11
Matches are distributed among these distances:
52 15 0.12
53 1 0.01
54 23 0.19
55 76 0.63
56 5 0.04
ACGTcount: A:0.35, C:0.18, G:0.13, T:0.34
Consensus pattern (54 bp):
TGGCATGTAACAACTAATTTTCAACATGGCTTGTAACAACTAAAATTTTCAACA
Found at i:22463945 original size:82 final size:83
Alignment explanation
Indices: 22463811--22463989 Score: 263
Period size: 82 Copynumber: 2.2 Consensus size: 83
22463801 ATGTAACAAC
* ** * *
22463811 TTTTTCATCATGGTGTGTAATAACTAAAATTTTCAACATGGCATGTAACAACTAGATCTTCAACA
1 TTTTTCAACATGGCATGTAACAACTAAAATTTTCAACATGGCATGTAACAACTAAATCTTCAACA
22463876 TGGCTTGTAACAACTACA
66 TGGCTTGTAACAACTACA
* *
22463894 TTTTTCAACATGGCATGTAACAACT-AAATTTTCCAA-ATGGCATGTAACAACTAAATCTTTAAT
1 TTTTTCAACATGGCATGTAACAACTAAAATTTT-CAACATGGCATGTAACAACTAAATCTTCAAC
22463957 ATGGCTTGTAACAACTACA
65 ATGGCTTGTAACAACTACA
*
22463976 TTTTTCAATATGGC
1 TTTTTCAACATGGC
22463990 GTGTGATAAA
Statistics
Matches: 87, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
82 63 0.72
83 24 0.28
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (83 bp):
TTTTTCAACATGGCATGTAACAACTAAAATTTTCAACATGGCATGTAACAACTAAATCTTCAACA
TGGCTTGTAACAACTACA
Found at i:22465536 original size:27 final size:27
Alignment explanation
Indices: 22465506--22465596 Score: 110
Period size: 27 Copynumber: 3.3 Consensus size: 27
22465496 CAATAGTGTG
*
22465506 TAACAACTAAATCTTCAACATTGCTTA
1 TAACAACTAAATCTTCAACATAGCTTA
* * * *
22465533 TAACAACTACATTTTTGAACATAGCATA
1 TAACAACTA-AATCTTCAACATAGCTTA
*
22465561 TAACAACTAAATCTTCAATATAGCTTA
1 TAACAACTAAATCTTCAACATAGCTTA
*
22465588 CAACAACTA
1 TAACAACTA
22465597 CATTTTTCAA
Statistics
Matches: 52, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
27 30 0.58
28 22 0.42
ACGTcount: A:0.44, C:0.21, G:0.04, T:0.31
Consensus pattern (27 bp):
TAACAACTAAATCTTCAACATAGCTTA
Found at i:22465562 original size:28 final size:28
Alignment explanation
Indices: 22465506--22465636 Score: 106
Period size: 28 Copynumber: 4.8 Consensus size: 28
22465496 CAATAGTGTG
* * * *
22465506 TAACAACTA-AATCTTCAACATTGCTTA
1 TAACAACTACATTTTTCAACATAGCATA
*
22465533 TAACAACTACATTTTTGAACATAGCATA
1 TAACAACTACATTTTTCAACATAGCATA
* * * *
22465561 TAACAACTA-AATCTTCAATATAGCTTA
1 TAACAACTACATTTTTCAACATAGCATA
* * *
22465588 CAACAACTACATTTTTCAATATGGCATA
1 TAACAACTACATTTTTCAACATAGCATA
* * *
22465616 TAATAATTA-AATTTTCAACAT
1 TAACAACTACATTTTTCAACAT
22465637 GGCGTGTAAT
Statistics
Matches: 82, Mismatches: 20, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
27 40 0.49
28 42 0.51
ACGTcount: A:0.43, C:0.18, G:0.05, T:0.34
Consensus pattern (28 bp):
TAACAACTACATTTTTCAACATAGCATA
Found at i:22465638 original size:27 final size:27
Alignment explanation
Indices: 22465510--22465657 Score: 98
Period size: 27 Copynumber: 5.4 Consensus size: 27
22465500 AGTGTGTAAC
* * * *
22465510 AACTAAATCTTCAACATTGCTTATAAC
1 AACTAAATTTTCAACATGGCATATAAT
* * * *
22465537 AACTACATTTTTGAACATAGCATATAAC
1 AACTA-AATTTTCAACATGGCATATAAT
* * * * * *
22465565 AACTAAATCTTCAATATAGCTTACAAC
1 AACTAAATTTTCAACATGGCATATAAT
* *
22465592 AACTACATTTTTCAATATGGCATATAAT
1 AACTA-AATTTTCAACATGGCATATAAT
* * *
22465620 AATTAAATTTTCAACATGGCGTGTAAT
1 AACTAAATTTTCAACATGGCATATAAT
*
22465647 AACTAATTTTT
1 AACTAAATTTT
22465658 TTTAAAAAAT
Statistics
Matches: 95, Mismatches: 24, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
27 53 0.56
28 42 0.44
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (27 bp):
AACTAAATTTTCAACATGGCATATAAT
Found at i:22465651 original size:55 final size:55
Alignment explanation
Indices: 22465506--22465636 Score: 181
Period size: 55 Copynumber: 2.4 Consensus size: 55
22465496 CAATAGTGTG
* *
22465506 TAACAACTAAATCTTCAACATTGCTTATAACAACTACATTTTTGAACATAGCATA
1 TAACAACTAAATCTTCAACATAGCTTATAACAACTACATTTTTCAACATAGCATA
* * * *
22465561 TAACAACTAAATCTTCAATATAGCTTACAACAACTACATTTTTCAATATGGCATA
1 TAACAACTAAATCTTCAACATAGCTTATAACAACTACATTTTTCAACATAGCATA
* * *
22465616 TAATAATTAAATTTTCAACAT
1 TAACAACTAAATCTTCAACAT
22465637 GGCGTGTAAT
Statistics
Matches: 66, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
55 66 1.00
ACGTcount: A:0.43, C:0.18, G:0.05, T:0.34
Consensus pattern (55 bp):
TAACAACTAAATCTTCAACATAGCTTATAACAACTACATTTTTCAACATAGCATA
Found at i:22469016 original size:10 final size:10
Alignment explanation
Indices: 22468988--22469051 Score: 56
Period size: 10 Copynumber: 6.4 Consensus size: 10
22468978 ATTAACTATT
*
22468988 TATACATACA
1 TATACATATA
* *
22468998 TACATATATA
1 TATACATATA
* *
22469008 TATATATATT
1 TATACATATA
* *
22469018 TATACGTATG
1 TATACATATA
22469028 TATACATATA
1 TATACATATA
*
22469038 TACACATATA
1 TATACATATA
22469048 TATA
1 TATA
22469052 GATAAATGCT
Statistics
Matches: 42, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
10 42 1.00
ACGTcount: A:0.45, C:0.11, G:0.03, T:0.41
Consensus pattern (10 bp):
TATACATATA
Found at i:22469282 original size:3 final size:3
Alignment explanation
Indices: 22469274--22469299 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
22469264 TAAAGTGTCT
22469274 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
22469300 TACGAATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:22478082 original size:2 final size:2
Alignment explanation
Indices: 22478075--22478110 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
22478065 TTAAATGATA
22478075 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22478111 TTCTTGACCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:22485035 original size:2 final size:2
Alignment explanation
Indices: 22485028--22485059 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
22485018 TTAAATGACA
22485028 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22485060 TTCTTAACCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:22485474 original size:18 final size:19
Alignment explanation
Indices: 22485437--22485477 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
22485427 ACACATTTAA
* *
22485437 TTAATCATATTAATCGTAT
1 TTAAACATATTAAACGTAT
22485456 TTAAACATA-TAAACGTAT
1 TTAAACATATTAAACGTAT
22485474 TTAA
1 TTAA
22485478 TCGTGTTATC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.44, C:0.10, G:0.05, T:0.41
Consensus pattern (19 bp):
TTAAACATATTAAACGTAT
Found at i:22490340 original size:37 final size:37
Alignment explanation
Indices: 22490293--22490396 Score: 147
Period size: 37 Copynumber: 2.8 Consensus size: 37
22490283 AAAATTAAAC
* * *
22490293 GGTTAATTACCCTTAAATAATAGAAAGAAGGCAATT-T
1 GGTTATTTACCTTTAAATAATAGAAAGAAGAC-ATTCT
* *
22490330 GTTTATTTACCTTTGAATAATAGAAAGAAGACATTCT
1 GGTTATTTACCTTTAAATAATAGAAAGAAGACATTCT
22490367 GGTTATTTACCTTTAAATAATAGAAAGAAG
1 GGTTATTTACCTTTAAATAATAGAAAGAAG
22490397 TTAATTATCC
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
36 3 0.05
37 56 0.95
ACGTcount: A:0.41, C:0.10, G:0.15, T:0.34
Consensus pattern (37 bp):
GGTTATTTACCTTTAAATAATAGAAAGAAGACATTCT
Found at i:22493085 original size:55 final size:54
Alignment explanation
Indices: 22493019--22493227 Score: 249
Period size: 55 Copynumber: 3.8 Consensus size: 54
22493009 TGATGACGGG
* *
22493019 TGATTCCAGCTATGTGCAGTGTGAGAGTGCAAATGAGTTGATGACTGGTGGATGA
1 TGATTCCAGCTATGTGC-GTGTGGGAGTGCAAATGAGCTGATGACTGGTGGATGA
* *
22493074 TGATTCTAGCTATGTGTGGTGTGGGAGTGCAAATGAGCTGATGACTGGTGGATGA
1 TGATTCCAGCTATGTG-CGTGTGGGAGTGCAAATGAGCTGATGACTGGTGGATGA
* * * *
22493129 TGATTCTAGCTATGCGCGATGTGGGAGTGCACATGAACTGATGA-TCGGTGGATGA
1 TGATTCCAGCTATGTGCG-TGTGGGAGTGCAAATGAGCTGATGACT-GGTGGATGA
* * * * *
22493184 TGATTCCAGCTATGTACGGTGCGGGAGTACACATGAGCTAATGA
1 TGATTCCAGCTATGTGC-GTGTGGGAGTGCAAATGAGCTGATGA
22493228 GCCGGTGGTT
Statistics
Matches: 135, Mismatches: 15, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
54 2 0.01
55 132 0.98
56 1 0.01
ACGTcount: A:0.24, C:0.13, G:0.34, T:0.28
Consensus pattern (54 bp):
TGATTCCAGCTATGTGCGTGTGGGAGTGCAAATGAGCTGATGACTGGTGGATGA
Found at i:22500100 original size:15 final size:15
Alignment explanation
Indices: 22500080--22500130 Score: 68
Period size: 15 Copynumber: 3.4 Consensus size: 15
22500070 TTCTTAAAAC
22500080 AACTTTAAAACCAAA
1 AACTTTAAAACCAAA
22500095 AACTTTAAAATCC-AA
1 AACTTTAAAA-CCAAA
*
22500110 AGCTTTAAAACCAAA
1 AACTTTAAAACCAAA
*
22500125 ATCTTT
1 AACTTT
22500131 GATCTTTAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
14 2 0.06
15 28 0.88
16 2 0.06
ACGTcount: A:0.51, C:0.20, G:0.02, T:0.27
Consensus pattern (15 bp):
AACTTTAAAACCAAA
Found at i:22504840 original size:2 final size:2
Alignment explanation
Indices: 22504835--22504909 Score: 105
Period size: 2 Copynumber: 36.0 Consensus size: 2
22504825 CATATTTATC
* *
22504835 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TCA TCA TG TA TGN
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A T-A TA TA T-A
22504880 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
22504910 CATCATCATG
Statistics
Matches: 67, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
2 61 0.91
3 6 0.09
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.48
Consensus pattern (2 bp):
TA
Found at i:22504884 original size:45 final size:44
Alignment explanation
Indices: 22504835--22504923 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 44
22504825 CATATTTATC
*
22504835 TATATATATATATATATATATATATATATATATCATCATGTATG
1 TATATATATATATATATATATATATATATACATCATCATGTATG
22504879 NTATATATATATATATATATATATATATATACATCATCATGTATG
1 -TATATATATATATATATATATATATATATACATCATCATGTATG
22504924 CCATCCCACC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.43, C:0.06, G:0.04, T:0.46
Consensus pattern (44 bp):
TATATATATATATATATATATATATATATACATCATCATGTATG
Found at i:22504994 original size:43 final size:42
Alignment explanation
Indices: 22504933--22505065 Score: 178
Period size: 42 Copynumber: 3.1 Consensus size: 42
22504923 GCCATCCCAC
* *
22504933 CATCATTAGCTCATGTGCACTCCCTACTCTCACATAGCTGGGT
1 CATCATCAGCTCATGTGCACTCCC-ACTCGCACATAGCTGGGT
*
22504976 CATCATCAGCTCATGTGCACT-CCACATCGCACATAGCTGTGT
1 CATCATCAGCTCATGTGCACTCCCAC-TCGCACATAGCTGGGT
* * *
22505018 CATCATCAGCTCATGTGCATTCCCACACGCACATAGTTGGGT
1 CATCATCAGCTCATGTGCACTCCCACTCGCACATAGCTGGGT
*
22505060 CGTCAT
1 CATCAT
22505066 TATCACATAA
Statistics
Matches: 80, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
41 2 0.03
42 54 0.68
43 24 0.30
ACGTcount: A:0.23, C:0.32, G:0.17, T:0.28
Consensus pattern (42 bp):
CATCATCAGCTCATGTGCACTCCCACTCGCACATAGCTGGGT
Found at i:22510442 original size:171 final size:170
Alignment explanation
Indices: 22510094--22512326 Score: 987
Period size: 171 Copynumber: 13.1 Consensus size: 170
22510084 AGAGAATAAC
* * * * * * * ** **
22510094 AAGGATTTCGAAGGCATGAGTGACTATAACTAGACTTTTTTTGTCAATAGTTTACTTTTTCTTCA
1 AAGGCTTTCGAAGGCATGACTGACAATAAATAGACTTTTCTTGTCAATGGATGGCTTTCACTTCA
* ** * * * *** *
22510159 CGTTTCTCGATGTAAACATCAAATTATGATCTTTTTTTATTGGAATTGTAAACAAAATTAAATTC
66 TGTTTAGCGA-GCAAACATCAAATTATGATCTGTTTTAATAAAAAATGTAAACAAAATTAAATTC
* * * *
22510224 AAAATCTTTTAAAAGTTATAAAACCACTGAAAGTGAGTAAT
130 AAAATCATTTAAAAGATATAAAACCACTGAAAGGGAGTAAG
* * * * *
22510265 AAGGCTTTTGAAGGTATGACTGCCAATAAATAGACTTTTCTTGTCAATGGGTGGCTTTCACTTTA
1 AAGGCTTTCGAAGGCATGACTGACAATAAATAGACTTTTCTTGTCAATGGATGGCTTTCACTTCA
* * *
22510330 TGTCTTCAGAC-A-CAAACATCAAATTATGATATGTTTTAATAAAAAATGTAAAC-AATTTTAAT
66 TGT-TT-AG-CGAGCAAACATCAAATTATGATCTGTTTTAATAAAAAATGTAAACAAAATTAAAT
* * * *
22510392 TCAAAGTCATTTAAAAGGATATAAATCCACTTAAAGGGTGTAAG
128 TCAAAATCATTTAAAA-GATATAAAACCACTGAAAGGGAGTAAG
* * * * **
22510436 AAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTGTTGTCAATGGATGGCTTTTGCTTCA
1 AAGGCTTTCGAAGGCATGACTGACAATAAATAGACTTTTCTTGTCAATGGATGGCTTTCACTTCA
* * * *** *
22510501 TGTTTAGCGATGCAAACATCGAATTATGATCTGTTTTAATCAAAAATG-AGA-GTCATTCAATTT
66 TGTTTAGCGA-GCAAACATCAAATTATGATCTGTTTTAATAAAAAATGTAAACAAAATT-AAATT
* * * * * * * * *
22510564 TAAAATTATTTATATGATTATAAAACCATTTAAAGCGACTAAT
129 CAAAATCATTTAAAAGA-TATAAAACCACTGAAAGGGAGTAAG
* * * ** ** * * * * *
22510607 TAGGCTTTTGATGGCATGGGTGACTCTAAATGGAC-TTTCTTGTTAACGGATGGTTTTCACTTTA
1 AAGGCTTTCGAAGGCATGACTGACAATAAATAGACTTTTCTTGTCAATGGATGGCTTTCACTTCA
** * * * * *** * * *
22510671 TGTTTCCCAATGCAAACAACAAACTATGATTTGTTTTAGCCAAAAATGAAAAAAAGAATCAAATT
66 TGTTTAGCGA-GCAAACATCAAATTATGATCTGTTTTAATAAAAAATGTAAACAA-AATTAAATT
* * *
22510736 -GAAATCATTTATAAGATTATAAAACCATCTG-AAGCGAGTAA-
129 CAAAATCATTTAAAAGA-TATAAAACCA-CTGAAAGGGAGTAAG
* * * * * * * **
22510777 ATA-GCTTTTGAATGCATTAGTGACTATAAATAGACTTTTATTGTCAATGGATGGCTTACGTTTC
1 A-AGGCTTTCGAAGGCATGACTGACAATAAATAGACTTTTCTTGTCAATGGATGGCTTTCACTTC
** *** * ** *
22510841 ACATTTCTTGATGCAAACATCAAATTATGATTTGTTTTAACCAAAAATGTAAA-AGAAATTCAAT
65 ATGTTTAGCGA-GCAAACATCAAATTATGATCTGTTTTAATAAAAAATGTAAACA-AAATTAAAT
* * * * * * *
22510905 TTAAAATCATTTAAAAAGTTATAAATCTACTTAAAGTGAGTAAC
128 TCAAAATCATTT-AAAAGATATAAAACCACTGAAAGGGAGTAAG
* * * ** * * * **
22510949 AAGGCTTTCGAATGCATGAGTTACTGTAACTAGACTTTTCTTGTCAACGGATGGTTTTTTCTTCA
1 AAGGCTTTCGAAGGCATGACTGACAATAAATAGACTTTTCTTGTCAATGGATGGCTTTCACTTCA
* ** * * ** * ** * *
22511014 CGTTT-TTGATGCAAGCA-AAAAGTTATGATCTACTTGAACCAAAAATGGAAA-AAAATTCAATT
66 TGTTTAGCGA-GCAAACATCAAA-TTATGATCTGTTTTAATAAAAAATGTAAACAAAATTAAATT
* * * * * ** * *
22511076 TAAAATGATTTATAAAGTTATAAATCCACTTAAAAAGAATAAC
129 CAAAATCATTTA-AAAGATATAAAACCACTGAAAGGGAGTAAG
* * * * ** * * * ** *
22511119 AAAGATTTCAAAGGCATGAGTGACTTTAACTAGATTTTTCTTATCAATGGATGGCTTTTTCTTCC
1 AAGGCTTTCGAAGGCATGACTGACAATAAATAGACTTTTCTTGTCAATGGATGGCTTTCACTTCA
** * *
22511184 TGTTTCTCGATGCAAATATCAAATTATGATC--TTTTAATCAAAAATATG-AAA-AAAACTAAAT
66 TGTTTAGCGA-GCAAACATCAAATTATGATCTGTTTTAAT-AAAAA-ATGTAAACAAAATTAAAT
* * * * * ** *
22511245 TCAAAATCTTTTAAAAGTTCTAAAACAACTTAAAACGAGTAAC
128 TCAAAATCATTTAAAAGATATAAAACCACTGAAAGGGAGTAAG
* * * * * * *
22511288 AAGGCTTTTGAAGGTATGAGTGCCTATAAATAAACTTTTCTTATCAATGGATGGCTTTCACTTCA
1 AAGGCTTTCGAAGGCATGACTGACAATAAATAGACTTTTCTTGTCAATGGATGGCTTTCACTTCA
* ** * * * * * *
22511353 TGTCTCCCGATTCAAACATCAAATTATGATCTGTTGTAACAAAAAATGCAGAAAAAAATTAATTT
66 TGTTTAGCGA-GCAAACATCAAATTATGATCTGTTTTAATAAAAAATGTA-AACAAAATTAAATT
* * * * *
22511418 C-AAATCATTTAAAAGGTTATAAATCCATTTAAAGGGTGTAAG
129 CAAAATCATTTAAAA-GATATAAAACCACTGAAAGGGAGTAAG
* * * * **
22511460 AAGTCTTTCGAAGGCATGAGTTACTATAAAT-GAACTTTTCTTGTCAATGGATGGCTTTTGCTTC
1 AAGGCTTTCGAAGGCATGACTGACAATAAATAG-ACTTTTCTTGTCAATGGATGGCTTTCACTTC
* * * * * *
22511524 ACGTTTCGTGATGCAAACTTCGAATTATGATCTGTTTTAATAAAAAA--TAAA-AATAATTCAAT
65 ATGTTTAGCGA-GCAAACATCAAATTATGATCTGTTTTAATAAAAAATGTAAACAA-AATT-AAA
* * * * * * * *
22511586 TTCAAAATCATTTATATGAT-TATAACCATTTAAAGTGACTAAT
127 TTCAAAATCATTTAAAAGATATAAAACCACTGAAAGGGAGTAAG
* * * * * * * * *
22511629 TAGGCTTTCGAGGGTATGAGTGACTATAAATGGGC-TTTCTTGTCAATGAATGGTTTTCACTTCA
1 AAGGCTTTCGAAGGCATGACTGACAATAAATAGACTTTTCTTGTCAATGGATGGCTTTCACTTCA
* ** * * * ** * *
22511693 CGTTTCCCTATTCAAAC-TACAAACTATGATCTGTTTTAACCAAGAATG-AAA-AAAATTCATAT
66 TGTTTAGCGA-GCAAACAT-CAAATTATGATCTGTTTTAATAAAAAATGTAAACAAAATT-AAAT
* * * * *
22511755 T-GAAATCATTTATAAGATTATAAAATCATCT-AAAGTGAGCAA-
128 TCAAAATCATTTAAAAGA-TATAAAACCA-CTGAAAGGGAGTAAG
* * * * * ** **
22511797 ATA-GCTTTTGAAGGCATTAGTGGCAATAAATAGACTTTTATTGTCAATGGATTACTTTCGTTTC
1 A-AGGCTTTCGAAGGCATGACTGACAATAAATAGACTTTTCTTGTCAATGGATGGCTTTCACTTC
* *** * * * *
22511861 ACGTTTCTTAGTGCAAATATCAAATTATGATATGTTTTAAGT-AAAAATGTAAA-AGAAATTCAA
65 ATGTTT-AGCGAGCAAACATCAAATTATGATCTGTTTTAA-TAAAAAATGTAAACA-AAATTAAA
* * * * * * *
22511924 TTTAAAATCATTTAAAAAGTTATAAATCTACTTTAAAGAGAGTAAT
127 TTCAAAATCATTT-AAAAGATATAAAACCAC-TGAAAGGGAGTAAG
** * * * * * * * * **
22511970 AAGGCTTTCGAACACATGAGTTACTATAACTGGACTTTTCCTATTAATGGATGGCTTTTTCTTCA
1 AAGGCTTTCGAAGGCATGACTGACAATAAATAGACTTTTCTTGTCAATGGATGGCTTTCACTTCA
** * * * * * *** * *
22512035 CATTT-TCTAATGCAAGCA-AAAAGTTATGATCTGCTTTAACCGAAAATGGAAA-AAAATTCAAT
66 TGTTTAGC-GA-GCAAACATCAAA-TTATGATCTGTTTTAATAAAAAATGTAAACAAAATTAAAT
* * * * * * *
22512097 TTAAAATCATTTATAAAGTTATAAATCCACTTAAAGAGAATAAC
128 TCAAAATCATTTA-AAAGATATAAAACCACTGAAAGGGAGTAAG
* * * * * * * * ** *
22512141 AAGGATTTCGGATGCATGAGTGACTATAACTAAACTTTTCTTGTCAATGGATGGGTTTTTCTTTA
1 AAGGCTTTCGAAGGCATGACTGACAATAAATAGACTTTTCTTGTCAATGGATGGCTTTCACTTCA
** * * *
22512206 TGTTTCCCAATGCAAACATCAAATTATGATCT-TTTTGAATCAAAAATGTAAAAAAAATTAAATT
66 TGTTTAGCGA-GCAAACATCAAATTATGATCTGTTTT-AATAAAAAATGTAAACAAAATTAAATT
* * * * * * *
22512270 CAAAATCTTTTAAAAAGTTCTAAAGCCACTTAAAGTGAGTAAC
129 CAAAATCATTT-AAAAGATATAAAACCACTGAAAGGGAGTAAG
*
22512313 AAGGCTTTTGAAGG
1 AAGGCTTTCGAAGG
22512327 TATACGTGTG
Statistics
Matches: 1618, Mismatches: 376, Indels: 135
0.76 0.18 0.06
Matches are distributed among these distances:
167 15 0.01
168 96 0.06
169 241 0.15
170 287 0.18
171 594 0.37
172 302 0.19
173 82 0.05
174 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.35
Consensus pattern (170 bp):
AAGGCTTTCGAAGGCATGACTGACAATAAATAGACTTTTCTTGTCAATGGATGGCTTTCACTTCA
TGTTTAGCGAGCAAACATCAAATTATGATCTGTTTTAATAAAAAATGTAAACAAAATTAAATTCA
AAATCATTTAAAAGATATAAAACCACTGAAAGGGAGTAAG
Found at i:22510823 original size:341 final size:339
Alignment explanation
Indices: 22510083--22512326 Score: 1726
Period size: 342 Copynumber: 6.6 Consensus size: 339
22510073 TGCTATGTTG
* * * * * * **
22510083 AAGAGAATAACAAGGATTTCGAAGGCATGAGTGACTATAACTAGACTTTTTTTGTCAATAGTTTA
1 AAGAGAGTAACAA-GCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGG
* * * * * *** * *
22510148 CTTTTTCTTCACGTTTCTCGATGTAAACATCAAATTATGATCTTTTTTTATTGGAATTGTAAACA
65 CTTTTGCTTCACGTTTCGCGATGCAAACATCAAATTATGATCTGTTTTAATCAAAAATG-AAA-G
* * * * * * *
22510213 AAATTAAATTCAAAATCTTTTAAA-AGTTATAAAACCACTGAAAGTGAGTAATAAGGCTTTTGAA
128 AAATTCAATTTAAAATCATTTAAAGA-TTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAA
* * * * * * * * *
22510277 GGTATGACTGCCAATAAATAGACTTTTCTTGTCAATGGGTGGCTTTCACTTTATGTCTT--CAGA
192 GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGTTTTCACTTCACGT-TTCCCA-A
** * * ** * * * * * *
22510340 CACAAACATCAAATTATGATATGTTTTAATAAAAAATGTAAACAATTTTAATTCAAAGTCATTTA
255 TGCAAACAACAAATTATGATCTGTTTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTA
*
22510405 AAAGGA-TATAAATCCA-CTTA
320 TAA-GATTATAAATCCATC-TA
* * * * *
22510425 AAGGGTGTAAGAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTGTTGTCAATGGATGG
1 AAGAGAGTAACAA-GCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGG
* * * * **
22510490 CTTTTGCTTCATGTTTAGCGATGCAAACATCGAATTATGATCTGTTTTAATCAAAAATGAGAGTC
65 CTTTTGCTTCACGTTTCGCGATGCAAACATCAAATTATGATCTGTTTTAATCAAAAATGAAAGAA
* * * * * *
22510555 ATTCAATTTTAAAATTATTTATATGATTATAAAACCATTTAAAGCGACTAATTAGGCTTTTGATG
130 ATTCAA-TTTAAAATCATTTA-AAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAG
* * * * * *
22510620 GCATGGGTGACTCTAAATGGAC-TTTCTTGTTAACGGATGGTTTTCACTTTATGTTTCCCAATGC
193 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGTTTTCACTTCACGTTTCCCAATGC
* * * * * *
22510684 AAACAACAAACTATGATTTGTTTTAGCCAAAAATGAAAAAAAGAATCAAATTGAAATCATTTATA
258 AAACAACAAATTATGATCTGTTTTAACCAAAAATGAAAAAAA-ATTCAATTTAAAATCATTTATA
* *
22510749 AGATTATAAAACCATCTG
322 AGATTATAAATCCATCTA
* * * * *
22510767 AAGCGAGTAA-ATAGCTTTTGAATGCATTAGTGACTATAAATAGACTTTTATTGTCAATGGATGG
1 AAGAGAGTAACA-AGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGG
** * * ** * *
22510831 CTTACGTTTCACATTTCTTGATGCAAACATCAAATTATGATTTGTTTTAACCAAAAATGTAAAAG
65 CTTTTGCTTCACGTTTCGCGATGCAAACATCAAATTATGATCTGTTTTAATCAAAAATG--AAAG
* * * * * *
22510896 AAATTCAATTTAAAATCATTTAAAAAGTTATAAATCTACTTAAAGTGAGTAACAAGGCTTTCGAA
128 AAATTCAATTTAAAATCATTTAAAGA-TTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAA
* * * * * * ** ***
22510961 TGCATGAGTTACTGTAACTAGACTTTTCTTGTCAACGGATGGTTTTTTCTTCACGTTT-TTGATG
192 GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGTTTTCACTTCACGTTTCCCAATG
* ** * * *
22511025 CAAGCAA-AAAGTTATGATCTACTTGAACCAAAAATGGAAAAAAATTCAATTTAAAATGATTTAT
257 CAAACAACAAA-TTATGATCTGTTTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTAT
22511089 AA-AGTTATAAATCCA-CTTA
321 AAGA-TTATAAATCCATC-TA
* * * * * * * *
22511108 AAAAGAATAACAAAGATTTCAAAGGCATGAGTGACTTTAACTAGATTTTTCTTATCAATGGATGG
1 AAGAGAGTAAC-AAGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGG
* * *
22511173 CTTTTTCTTC-CTGTTTCTCGATGCAAATATCAAATTATGATC--TTTTAATCAAAAATATGAAA
65 CTTTTGCTTCAC-GTTTCGCGATGCAAACATCAAATTATGATCTGTTTTAATC-AAAA-ATGAAA
* * * * * * * * * * *
22511235 AAAACTAAATTCAAAATCTTTTAAA-AGTTCTAAAACAACTTAAAACGAGTAACAAGGCTTTTGA
127 GAAATTCAATTTAAAATCATTTAAAGA-TTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGA
* * ** * * * * *
22511299 AGGTATGAGTGCCTATAAATAAACTTTTCTTATCAATGGATGGCTTTCACTTCATGTCTCCCGAT
191 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGTTTTCACTTCACGTTTCCCAAT
* * * * *
22511364 TCAAACATCAAATTATGATCTGTTGTAACAAAAAATGCAGAAAAAAATT-AATTTCAAATCATTT
256 GCAAACAACAAATTATGATCTGTTTTAACCAAAAATG-A-AAAAAAATTCAATTTAAAATCATTT
* * *
22511428 AAAAGGTTATAAATCCATTTA
319 ATAAGATTATAAATCCATCTA
* * * *
22511449 AAGGGTGTAAGAAGTCTTTCGAAGGCATGAGTTACTATAAAT-GAACTTTTCTTGTCAATGGATG
1 AAGAGAGTAACAAG-CTTTCGAAGGCATGAGTGACTATAAATAG-ACTTTTCTTGTCAATGGATG
* * * * *
22511513 GCTTTTGCTTCACGTTTCGTGATGCAAACTTCGAATTATGATCTGTTTTAATAAAAAAT-AAAAA
64 GCTTTTGCTTCACGTTTCGCGATGCAAACATCAAATTATGATCTGTTTTAATCAAAAATGAAAGA
* * * *
22511577 TAATTCAATTTCAAAATCATTTATATGATTAT--AACCATTTAAAGTGACTAATTAGGCTTTCGA
129 -AATTCAATTT-AAAATCATTTA-AAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGA
* * * * *
22511640 GGGTATGAGTGACTATAAATGGGC-TTTCTTGTCAATGAATGGTTTTCACTTCACGTTTCCCTAT
191 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGTTTTCACTTCACGTTTCCCAAT
* * * * *
22511704 TCAAACTACAAACTATGATCTGTTTTAACCAAGAATG-AAAAAAATTC-ATATTGAAATCATTTA
256 GCAAACAACAAATTATGATCTGTTTTAACCAAAAATGAAAAAAAATTCAAT-TTAAAATCATTTA
22511767 TAAGATTATAAAAT-CATCTA
320 TAAGATTAT-AAATCCATCTA
* * * * * * * **
22511787 AAGTGAGCAA-ATAGCTTTTGAAGGCATTAGTGGCAATAAATAGACTTTTATTGTCAATGGATTA
1 AAGAGAGTAACA-AGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGG
* * ** * *
22511851 CTTTCGTTTCACGTTTC-TTAGTGCAAATATCAAATTATGATATGTTTTAAGT-AAAAATGTAAA
65 CTTTTGCTTCACGTTTCGCGA-TGCAAACATCAAATTATGATCTGTTTTAA-TCAAAAATG--AA
* * * *
22511914 AGAAATTCAATTTAAAATCATTTAAAAAGTTATAAATCTACTTTAAAGAGAGTAATAAGGCTTTC
126 AGAAATTCAATTTAAAATCATTTAAAGA-TTATAAAACCA-TTTAAAGCGAGTAATAAGGCTTTC
** * * * * * * * * *
22511979 GAACACATGAGTTACTATAACTGGACTTTTCCTATTAATGGATGGCTTTT-TCTTCACATTTTCT
189 GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGG-TTTTCACTTCACGTTTCCC
* * * *
22512043 AATGCAAGCAA-AAAGTTATGATCTGCTTTAACCGAAAATGGAAAAAAATTCAATTTAAAATCAT
253 AATGCAAACAACAAA-TTATGATCTGTTTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCAT
22512107 TTATAA-AGTTATAAATCCA-CTTA
317 TTATAAGA-TTATAAATCCATC-TA
* * * * * *
22512130 AAGAGAATAACAAGGATTTCGGATGCATGAGTGACTATAACTAAACTTTTCTTGTCAATGGATGG
1 AAGAGAGTAACAA-GCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGG
* * * * * *
22512195 GTTTTTCTTTATGTTTCCCAATGCAAACATCAAATTATGATCT-TTTTGAATCAAAAATGTAAAA
65 CTTTTGCTTCACGTTTCGCGATGCAAACATCAAATTATGATCTGTTTT-AATCAAAAATG--AAA
* * * * * * * * * * *
22512259 AAAATTAAATTCAAAATCTTTTAAAAAGTTCTAAAGCCACTTAAAGTGAGTAACAAGGCTTTTGA
127 GAAATTCAATTTAAAATCATTTAAAGA-TTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGA
22512324 AGG
191 AGG
22512327 TATACGTGTG
Statistics
Matches: 1503, Mismatches: 336, Indels: 125
0.77 0.17 0.06
Matches are distributed among these distances:
336 2 0.00
337 100 0.07
338 50 0.03
339 92 0.06
340 148 0.10
341 428 0.28
342 437 0.29
343 125 0.08
344 120 0.08
345 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.35
Consensus pattern (339 bp):
AAGAGAGTAACAAGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGC
TTTTGCTTCACGTTTCGCGATGCAAACATCAAATTATGATCTGTTTTAATCAAAAATGAAAGAAA
TTCAATTTAAAATCATTTAAAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCA
TGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGTTTTCACTTCACGTTTCCCAATGCAAA
CAACAAATTATGATCTGTTTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTATAAGAT
TATAAATCCATCTA
Found at i:22513254 original size:21 final size:21
Alignment explanation
Indices: 22513228--22513267 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
22513218 AACAGAATGT
22513228 TTCTCGCTGCAGCAAAATTCA
1 TTCTCGCTGCAGCAAAATTCA
22513249 TTCTCGCTGCAGCAAAATT
1 TTCTCGCTGCAGCAAAATT
22513268 GCTACCCAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.30
Consensus pattern (21 bp):
TTCTCGCTGCAGCAAAATTCA
Found at i:22513316 original size:60 final size:59
Alignment explanation
Indices: 22513190--22513321 Score: 178
Period size: 60 Copynumber: 2.2 Consensus size: 59
22513180 ATAGAAAGTT
* *
22513190 TTTCGCTGCAGCAAAATTGTAACCCAGAAACAGAATGTTTCTCGCTGCAGCAAAATTCA
1 TTTCGCTGCAGCAAAATTGTAACCCAGAAACAGAAAGTTTCTCGCTACAGCAAAATTCA
* *
22513249 TTCTCGCTGCAGCAAAATTGCT-ACCCAGAAACAGAAAGTTTCTCGCTATAGCGAGAATGT-A
1 TT-TCGCTGCAGCAAAATTG-TAACCCAGAAACAGAAAGTTTCTCGCTACAGC-AAAAT-TCA
22513310 TTTCGCTGCAGC
1 TTTCGCTGCAGC
22513322 GAGATGCTAC
Statistics
Matches: 65, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
59 2 0.03
60 54 0.83
61 8 0.12
62 1 0.02
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (59 bp):
TTTCGCTGCAGCAAAATTGTAACCCAGAAACAGAAAGTTTCTCGCTACAGCAAAATTCA
Found at i:22516497 original size:343 final size:342
Alignment explanation
Indices: 22514896--22521044 Score: 4686
Period size: 343 Copynumber: 17.9 Consensus size: 342
22514886 CAACATGCCA
* *
22514896 ATAAATAGACTTTTAC-TGTCAATGAATGGCTTTTGCTTCACGTTTCTCAATGCAAACATCAAAT
1 ATAAATAGACTTTT-CTTGTCAATGGAT-GCTTTTTCTTCACGTTTCTCAATGCAAACATCAAAT
* * * * *
22514960 TATGATCTGTCTTAACCAAAAATGTAAAAAAATTTAATTTAAAATCATTTA-AAAAGTTATAAAT
64 TATGATCTTTTTTAACCAAAAATGAAAAAAAAATTAATTTAAAATCATTTATAAATGTTATAAAT
* * * *
22515024 CCACTTAAAATGAGTGAA-AAGGCTTTCGAAGGCATGAGTAACTATAAATGGACTTTTCTTGTTA
129 CCACTTAAAGTGAGT-AACAAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * * * *
22515088 ATAGATGGCTTTCGCTTCATGTTTCATGATGCAAACATCAAATTATGATTTGTTTTAACCAAAAA
193 ATGGATGGCTTTTGCTTCACGTTTCCTAATGCAAACATCAAATTATGATCTGTTTTAACCAAAAA
* * * * * ** * *
22515153 TGAAAATAATTCAATTTTAAAATCATTCA-AGAGATTATAAGACCTTTTAAAG-GAACTAACTAG
258 TAAAAAAAATTCAA-TTTAAAATCATTTATAAAGATTATAAAACCACTTAAAGAG-AGTAACAAG
* * *
22515216 GCTTTCAAAGACATTAGTGACT
321 GCTTTCGAAGGCATGAGTGACT
* * * * * ** * * *
22515238 ATAAATGGACTTTTCTTATCAATTGATGGTTTTTGCTTCATGTTTCTTGATGGAAATAACAAATT
1 ATAAATAGACTTTTCTTGTCAATGGATGCTTTTT-CTTCACGTTTCTCAATGCAAACATCAAATT
* * * * *
22515303 ATAACCTTTTTTAACTAAAAATGAAAAAGAAATTGAATTTGAAATCATTTAT-AA-GATTATAAC
65 ATGATCTTTTTTAACCAAAAATGAAAAAAAAATT-AATTTAAAATCATTTATAAATG-TTATAA-
* * * * *
22515366 AT-CATTTAAAGTGAGTAAAAAGGCTTTTGAAGTCATGAGTGACAATCAATGGACTTTTCTTGTC
127 ATCCACTTAAAGTGAGTAACAAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTC
* * * *
22515430 AATGGATTGCTTTCAG-TTCACATTT-CTCAATGCAAACATCAAATTACGATCTGTTTTAACCAA
192 AATGGATGGCTTT-TGCTTCACGTTTCCT-AATGCAAACATCAAATTATGATCTGTTTTAACCAA
* * *
22515493 CAATGTAAAAAAAATTCAATTTAAAATCATTTAAAAAG-TTATAAATCCACTTAAACG-GAGTAA
255 -AA-ATAAAAAAAATTCAATTTAAAATCATTTATAAAGATTATAAAACCACTTAAA-GAGAGTAA
* *
22515556 TAAGGCTTTCGAAGGCATGAGTGATT
317 CAAGGCTTTCGAAGGCATGAGTGACT
* * * * * *
22515582 ATAAATAGACTTTTCTTGTGAACGTATGACTTTTTCCTCACATTTC-CATGTGCAAACATCAAAT
1 ATAAATAGACTTTTCTTGTCAATGGATG-CTTTTTCTTCACGTTTCTCA-ATGCAAACATCAAAT
** * * *
22515646 TATGATCACTTTTAACCAAAAAAGAGAAAAAAATTCAATTTTAAAATCATTTAT--ACGATTATA
64 TATGATCTTTTTTAACCAAAAATGAAAAAAAAATT-AA-TTTAAAATCATTTATAAATG-TTATA
* * * *
22515709 AAACCA-TGTAAAGTGACTAACTAGGCTTTTGAAGGTATGAGTGACTATAAATGGACTTTTCCTT
126 AATCCACT-TAAAGTGAGTAACAAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTT-CTT
* ** * ** * *
22515773 -TCAATGGATGG-TGGTCACTTCACTTTTCCTAACACAAATAACAAATTATGATCTGTTTTAACC
189 GTCAATGGATGGCT-TTTGCTTCACGTTTCCTAATGCAAACATCAAATTATGATCTGTTTTAACC
* * * * *
22515836 AAAAATGAAAAAAAAATTCAAATTAAAATTATTTGT-AAGATTAGAAAACCA-TCTGAAGCA-AG
253 AAAAAT--AAAAAAAATTCAATTTAAAATCATTTATAAAGATTATAAAACCACT-TAAAG-AGAG
* * * * *
22515898 TAA-ATAGGCTTTTGCAGGCATTAATTACT
314 TAACA-AGGCTTTCGAAGGCATGAGTGACT
* * *
22515927 ATAAATAGACATTTCTTGTCAATGGATTGCTTCTGT-TTCACGTTTCTCAATGAAAACATCAAAT
1 ATAAATAGACTTTTCTTGTCAATGGA-TGCTT-TTTCTTCACGTTTCTCAATGCAAACATCAAAT
*
22515991 TATGAT-TTGTTTTAACCAAAAAT-ATAAAATAAATTCAATTTAAAATCATTTCA-AAA-GTTAT
64 TATGATCTT-TTTTAACCAAAAATGA-AAAAAAAATT-AATTTAAAATCATTT-ATAAATGTTAT
* * ** * * ** *
22516052 AAATCCACTTAAAGCGAGTAACAAGGCTGTCAAAAGCATGAGTTACTATACTTGGACTTTTCTTA
125 AAATCCACTTAAAGTGAGTAACAAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTG
* * * * * * * * * *
22516117 TCAATGAATGGCTTTTTCTTTACATTT-TTCGATGCAAACAACAAGTTAAGATCTGCTTTAACCA
190 TCAATGGATGGCTTTTGCTTCACGTTTCCT-AATGCAAACATCAAATTATGATCTGTTTTAACCA
* * * * * *
22516181 ACAATAAAAAAAATTCAATTTGAAATCACTTATAAAG-TTATAAATCCAATTAAAGAGAATAACA
254 AAAATAAAAAAAATTCAATTTAAAATCATTTATAAAGATTATAAAACCACTTAAAGAGAGTAACA
* *
22516245 AGGCTTTTGAAGGCATAAGTGACT
319 AGGCTTTCGAAGGCATGAGTGACT
* * * *
22516269 ATAACTTGACTTTTCTTGTCAACGGATAGCTTTTTCTTCATGTTTCTCAATGCAAACATCAAATT
1 ATAAATAGACTTTTCTTGTCAATGGAT-GCTTTTTCTTCACGTTTCTCAATGCAAACATCAAATT
*** * *
22516334 ATGATCTTTTTTAATTGAAAATGTAAAAAAAAAACTAATTTAAAATCATTTA-AAATGTAATAAA
65 ATGATCTTTTTTAACCAAAAATG--AAAAAAAAATTAATTTAAAATCATTTATAAATGTTATAAA
* ** *
22516398 TCCACTTAAAAG-GAGTAAGAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTATTGTC
128 TCCACTT-AAAGTGAGTAACAAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTC
* * *
22516462 AATGGATGGCTTTTGTTTCACGTTTCGTAATGCAAACATCAAATTATG-TACTGTTTTAATCAGA
192 AATGGATGGCTTTTGCTTCACGTTTCCTAATGCAAACATCAAATTATGAT-CTGTTTTAACCA-A
* * * * * *
22516526 AAA-GAGAAAAATTTAATTTTAAAATCATTTAT-ACGATTATAAAACCATTTAAAGTA-ACTAAC
255 AAATAAAAAAAATTCAA-TTTAAAATCATTTATAAAGATTATAAAACCACTTAAAG-AGAGTAAC
* *
22516588 TAGGCTTTCG-AGGGATGAGTGTGACT
318 AAGGCTTTCGAAGGCATGA--GTGACT
* * * * *
22516614 ATAAATAGACTTTTCTTGTCAATGGATGGTTTTCGCTTCACGTTTCCCAATGCAAACAACAAACT
1 ATAAATAGACTTTTCTTGTCAATGGATGCTTTT-TCTTCACGTTTCTCAATGCAAACATCAAATT
* * * * * *
22516679 ATGATCTCTTTTAACCAAAAATG-AGAAAAAATTCAAATTGAAATCATTTATAAA-ATTATAAAA
65 ATGATCTTTTTTAACCAAAAATGAAAAAAAAATT-AATTTAAAATCATTTATAAATGTTATAAAT
* * * * *
22516742 CCA-TATGAAGGGAGTAA-ATAGGCTTTTAAAGGCATGAGTGACTATAAATAGACTTTTCTTGCC
129 CCACT-TAAAGTGAGTAACA-AGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTC
* * * * * * * *
22516805 AATGGATGGTTTTTGCTTCACATTTCCCAATGCAAACAACAAACTATGATATCTTTTAGCCAAAA
192 AATGGATGGCTTTTGCTTCACGTTTCCTAATGCAAACATCAAATTATGATCTGTTTTAACCAAAA
* ** ** * * *
22516870 ATGAAAAGGATTCAAACTGAAATTATTTAT-AAGATTATAAAAACCA-TCTAAAGTGAGTAA-AT
257 ATAAAAAAAATTCAATTTAAAATCATTTATAAAGATTAT-AAAACCACT-TAAAGAGAGTAACA-
* * * *
22516932 AGGCTTTTGAAGGAATTAGTTACT
319 AGGCTTTCGAAGGCATGAGTGACT
** * * *
22516956 ATAAATAGACTTTGATTGTCAATGGATGGCTTTTGT-TTCACATTTCTCGATGTAAACATCAAAT
1 ATAAATAGACTTTTCTTGTCAATGGAT-GCTTTT-TCTTCACGTTTCTCAATGCAAACATCAAAT
* * * * * * *
22517020 TGTAATCTGTTTCATCCAAAACCAT--AAAACAAATTCAATTTAAAATCATTTA-AAAAGTTATA
64 TATGATCTTTTTTAACCAAAA--ATGAAAAAAAAATT-AATTTAAAATCATTTATAAATGTTATA
* * ** * * * *
22517082 AATCCACTTAAAGCGAGTAATAAGGCTTTCAAAGGCATGAGTTACTAGAACTAGACTTTTCTTGT
126 AATCCACTTAAAGTGAGTAACAAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGT
* * * *
22517147 CAATGGATGGCTTTTTCCTCACGTTTTCTAATGCAAACA--AAATGTTATGATCTGCTTTAACCA
191 CAATGGATGGCTTTTGCTTCACGTTTCCTAATGCAAACATCAAA--TTATGATCTGTTTTAACCA
* * * * * * * *
22517210 AAAATGGAAAAGAAATTTAGTCTAAAATCATTTGTAAAG-TTATAAATCCAGTTAAAGAGAATAA
254 AAAAT--AAAAAAAATTCAATTTAAAATCATTTATAAAGATTATAAAACCACTTAAAGAGAGTAA
* * *
22517274 CAAGGATTTCAAAAGCATGAGTGACT
317 CAAGGCTTTCGAAGGCATGAGTGACT
* *
22517300 ATAACTAGACTTTTCTTATCAATGGATGGCTTTTTCTTCACGTTTCT-AATGC-AACATCAAATT
1 ATAAATAGACTTTTCTTGTCAATGGAT-GCTTTTTCTTCACGTTTCTCAATGCAAACATCAAATT
*** * ** * *
22517363 ATGATCTTTTTTAATTGAAAAT-ATAAAACAAATTTCTTTCAAAATCATTTA-AAAAGTTTTAAA
65 ATGATCTTTTTTAACCAAAAATGA-AAAAAAAATTAATTT-AAAATCATTTATAAATGTTATAAA
* * * * * * *
22517426 ACCACTTAAAGTGAGTAACAAGACTTTTGAAGGTATAAATGCCTATAAAAGGACTTTTCTTGTCA
128 TCCACTTAAAGTGAGTAACAAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * * * *
22517491 ATGGATAGCTTTTGCTCCAAGTTTCATGATGCAAACATCAAATTATGATTTGTTTTAACCAAAAA
193 ATGGATGGCTTTTGCTTCACGTTTCCTAATGCAAACATCAAATTATGATCTGTTTTAACCAAAAA
* * * * ** * *
22517556 TGAGAATAATTCAATTTTAAAATCATTCA-AAAGATTATAAAACCTTTTAAAG-GAACTAACTAG
258 TAAAAAAAATTCAA-TTTAAAATCATTTATAAAGATTATAAAACCACTTAAAGAG-AGTAACAAG
* * *
22517619 GCTTTCGAATGCATTAGTGATT
321 GCTTTCGAAGGCATGAGTGACT
* * * * * ** * * *
22517641 ATAAATGGACTTTTCTTGTCAATGGATGGTTTTCGCTTCATGTTTTTTGATGGAAATAACAAATT
1 ATAAATAGACTTTTCTTGTCAATGGATGCTTTT-TCTTCACGTTTCTCAATGCAAACATCAAATT
* * * * * *
22517706 ATAATCTGTTTTAACTAAAAATG-AAAAATAATTGAATTTGAAATCATTTAT-TA-GATTATAAA
65 ATGATCTTTTTTAACCAAAAATGAAAAAAAAATT-AATTTAAAATCATTTATAAATG-TTATAAA
* * * ** ** * *
22517768 ACCATTTGAAGCAAACAA-ATAGGCTTTTGAAGTCAAGAGTGACTATAAATGGACTTTTCTTGTC
128 TCCACTTAAAGTGAGTAACA-AGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTC
* *** * * *
22517832 AATGGATAGCTTCCACTTCATGTTT-CTCAATGCAAACATCAAATTACGATCTGTTTTAACCAAC
192 AATGGATGGCTTTTGCTTCACGTTTCCT-AATGCAAACATCAAATTATGATCTGTTTTAACCAAA
* * * * * * * *
22517896 AATGCAAAAGAAATTCAATTCAAAATTATTTAAAAAG-TAATAAATCCGCTTAAAGTGAGTAACA
256 AAT--AAAAAAAATTCAATTTAAAATCATTTATAAAGATTATAAAACCACTTAAAGAGAGTAACA
*
22517960 AGGCTATCGAAGGCATGAGCT-ACT
319 AGGCTTTCGAAGGCATGAG-TGACT
** * * * * * * *
22517984 ATACTTGGACTTTTCTTATTAATGGAAGGC-TTTTCTTCACATTT-TCCAATGCAAACAACAAGT
1 ATAAATAGACTTTTCTTGTCAATGG-ATGCTTTTTCTTCACGTTTCT-CAATGCAAACATCAAAT
* ** * * * *
22518047 TATGATATGCTTTAACTAAAACTGAAAAAAAAAATTCAATTTGAAATCACTTATAAA-GTTATAA
64 TATGATCTTTTTTAACCAAAAATG-AAAAAAAAATT-AATTTAAAATCATTTATAAATGTTATAA
* * * * ** ** * * *
22518111 ATCCAATTAAAGAGAATAATAACACTTTCAAAGGCATGAGTGACTATTACTAGACTTTTCTTGTC
127 ATCCACTTAAAGTGAGTAACAAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTC
* * ** * * * *
22518176 AATGAATGGCTTTTGCTTCATGTTTTATGACGCAAACATCAAATTATGATCTCTTTTAATCAAAA
192 AATGGATGGCTTTTGCTTCACGTTTCCTAATGCAAACATCAAATTATGATCTGTTTTAACCAAAA
* * * * * *
22518241 A-AGAGAAAAATTAAATTTTAAAATCATTTAT-ACGATTATAAAACTATTTAAAGAG-GCTAACT
257 ATA-AAAAAAATTCAA-TTTAAAATCATTTATAAAGATTATAAAACCACTTAAAGAGAG-TAACA
* **
22518303 AGGCTTTCGAGGGCATGAGTGGTT
319 AGGCTTTCGAAGGCATGAGTGACT
* * * ** * * *
22518327 ATAAATAGACTTTTCTTGTAAATTGATGGTTTTTCGCTTCGGGTTTCGCAATGCAAACAACAAAC
1 ATAAATAGACTTTTCTTGTCAATGGATGCTTTTT--CTTCACGTTTCTCAATGCAAACATCAAAT
*
22518392 TATGATCTTTTTTAACCAAAAATG-AAAAAAAATTCAAATTAAAATCATTTAT-AA-GATTATAA
64 TATGATCTTTTTTAACCAAAAATGAAAAAAAAATT-AATTTAAAATCATTTATAAATG-TTAT-A
* * * *
22518454 AAT-CA-TATGAAGTGAG-AAAATAGGCTTTTGATGGTATGAGTGACTATAAATGGACTTTTCTT
126 AATCCACT-TAAAGTGAGTAACA-AGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTT
* * * *
22518516 GTCAATGGATGG-TTTTCGCTTCACGTTTCCTAATGCAAACAACAAACTATGATCTCTTTTAA-T
189 GTCAATGGATGGCTTTT-GCTTCACGTTTCCTAATGCAAACATCAAATTATGATCTGTTTTAACC
** * * * *
22518579 AAAAATTTTTAAAAAATTCAAATTAAAATCATTTAT-AAGATTATAAAACCA-TCTGAAGGGAGC
253 AAAAA--TAAAAAAAATTCAATTTAAAATCATTTATAAAGATTATAAAACCACT-TAAAGAGAGT
** *
22518642 AA-ATAGGCTTTTAAAGGCATTAGTGACT
315 AACA-AGGCTTTCGAAGGCATGAGTGACT
* * * ** * *
22518670 ACAAATAGACTTTTCTTGTCAAGGGATGGCTTTTGT-TTCATGTTTCTTGACGCAAACATTAAAT
1 ATAAATAGACTTTTCTTGTCAATGGAT-GCTTTT-TCTTCACGTTTCTCAATGCAAACATCAAAT
* *
22518734 TATGATCTGTTTTAACCAAAACCAT--AAAAGAAATTCAATTTAAAATCATTTATAAA-GTTATA
64 TATGATCTTTTTTAACCAAAA--ATGAAAAAAAAATT-AATTTAAAATCATTTATAAATGTTATA
* * * * * * * *
22518796 AATCCACTTAAAGAGAATAACAAGGATTTTGAAGGCATGATTGACTATAACTAGAGTTTTGTTGT
126 AATCCACTTAAAGTGAGTAACAAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGT
* * * * * **
22518861 CAATGGATGGCTTTTTCTTCATGTTT-CTCGATGCAAACATCAAATTATGATATTTTTTAAGTAA
191 CAATGGATGGCTTTTGCTTCACGTTTCCT-AATGCAAACATCAAATTATGATCTGTTTTAACCAA
*
22518925 AAATGTAAAAAAAATATTC-ATTTAAAATCATTTAAAAAG-TT-TCAAAACCACTTAAAGCA-AG
255 AAA--T-AAAAAAA-ATTCAATTTAAAATCATTTATAAAGATTAT-AAAACCACTTAAAG-AGAG
* * * *
22518986 TAATAAGGCTTTGGAAGGTATGAGTGCCT
314 TAACAAGGCTTTCGAAGGCATGAGTGACT
* * * *
22519015 ATAAATAGACTTTTGTTGTCAATGGATAGCTTTCGT-TTCACGTCTC-CTGATGCAAACATCAAA
1 ATAAATAGACTTTTCTTGTCAATGGAT-GCTTT-TTCTTCACGTTTCTC-AATGCAAACATCAAA
* *
22519078 TTATGATCTATTTTAACCAAAAATGTAAAAAAAAA-TAATTTAAAATCATTTA-AAAAGTTATAA
63 TTATGATCTTTTTTAACCAAAAATG-AAAAAAAAATTAATTTAAAATCATTTATAAATGTTATAA
* * ** *
22519141 ATCCACTTAAAGGGAGTAAAAAGGCTTTCAAAGGCATGAATGACTATAAATGGACTTTTCTTGTC
127 ATCCACTTAAAGTGAGTAACAAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTC
* * * **
22519206 AATGGATGGCTTGTGCTTCACGTTTCGTGATGCAAACATCAAATTATGATCTGTTTTAATGAAAA
192 AATGGATGGCTTTTGCTTCACGTTTCCTAATGCAAACATCAAATTATGATCTGTTTTAACCAAAA
* * * * * * *
22519271 ATGTAAAAGAATTCAATTTAAAATCATTTA-AATGGTTATAAATCCACTTAAAG-GATGTGAGAA
257 AT-AAAAAAAATTCAATTTAAAATCATTTATAAAGATTATAAAACCACTTAAAGAGA-GTAACAA
* * **
22519334 GGCTTTGGAAGGTATGAGTGTTT
320 GGCTTTCGAAGGCATGAGTGACT
* * *
22519357 ATAAATAGACTTTTCTTGTCAATGGATGGTTTTCGCTTCA--TTTCTCCCAATGCAAATATCAAA
1 ATAAATAGACTTTTCTTGTCAATGGATGCTTTT-TCTTCACGTTTCT--CAATGCAAACATCAAA
* * *
22519420 TTATGAT-TTGTTTTAACAAAAAATGTAAAAAAAA-TAATTTAAAATCATTTA-AAAGGTTATAA
63 TTATGATCTT-TTTTAACCAAAAATGAAAAAAAAATTAATTTAAAATCATTTATAAATGTTATAA
* * * * * *
22519482 ATCCTCTAAAAAG-GTGTAAGAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTGTCTTGT
127 ATCCACT-TAAAGTGAGTAACAAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGT
* ** ** * **
22519546 TAATGGATGGCTTTTGCTTCACGTTTCGCT-ATGCAAACATTGAATTATGATCCATTTAAATAAA
191 CAATGGATGGCTTTTGCTTCACGTTTC-CTAATGCAAACATCAAATTATGATCTGTTTTAACCAA
* ** * * * * * * * * **
22519610 AAATGAGTATAATTCAAATTTTAAATCAATTAT-ATGATTATAAAACCATTTAGAGTGACTAATT
255 AAATAAAAAAAATTC-AATTTAAAATCATTTATAAAGATTATAAAACCACTTAAAGAGAGTAACA
* * * *
22519674 AGGCTTTCGAGGGAATAAGTGACA
319 AGGCTTTCGAAGGCATGAGTGACT
* * * * * *
22519698 ATAAATAGACTTTT-TCTGTCAATGGATGGTTTTCACTACACGTTTCCCAATGCAAACAACAAAC
1 ATAAATAGACTTTTCT-TGTCAATGGATGCTTTT-TCTTCACGTTTCTCAATGCAAACATCAAAT
* * * * *
22519762 TATGATCTGTTTTAACCAAAAATG--AAAAACATTCAAATTGAAATCATTTAT-AA-GATTAGAA
64 TATGATCTTTTTTAACCAAAAATGAAAAAAAAATT-AATTTAAAATCATTTATAAATG-TTATAA
* * * ** *
22519823 AACCA-TCTGAA-TCGAGTAA-ATAGGCTTTTGCAA-GCATTAGTGACTATAAATATACATTTCT
127 ATCCACT-TAAAGT-GAGTAACA-AGGCTTTTG-AAGGCATGAGTGACTATAAATGGACTTTTCT
* * * * * * * **
22519884 TGTCAATGGATGGCTTTTGTTTCACGCTTCCTGATGAAAACAACAAATCATGATTTGTTTTAATG
188 TGTCAATGGATGGCTTTTGCTTCACGTTTCCTAATGCAAACATCAAATTATGATCTGTTTTAACC
** * *
22519949 AAAGCTACAAAAAAATTCAATTTAAAATCATTTCA-AAAG-TTATAAATCCACTTAAAGCGAGTA
253 AAAAATA-AAAAAAATTCAATTTAAAATCATTT-ATAAAGATTATAAAACCACTTAAAGAGAGTA
* * *
22520012 ACAAGGCTGTCAAAGGCATGAGTTACT
316 ACAAGGCTTTCGAAGGCATGAGTGACT
** * * *
22520039 ATACCT-GAACTTTTCTTGTCAAAGGATGGCTTTTTCTTCACGTTT-TCTGATGCAAACAAT-AT
1 ATAAATAG-ACTTTTCTTGTCAATGGAT-GCTTTTTCTTCACGTTTCTC-AATGCAAAC-ATCAA
* * *
22520101 GTTATGATCTGTTTTAACCAAAAATGAAAAAAATATTCAATTTAAAAAT-ATTTATAAA-GTTAT
62 ATTATGATCTTTTTTAACCAAAAATGAAAAAAAAATT-AATTT-AAAATCATTTATAAATGTTAT
* * * *
22520164 AAATCAACTTAAAGAGAATAACAAGGCTTTTGAAGGCATGAGTGACTATAACTGGACTTTTCTTG
125 AAATCCACTTAAAGTGAGTAACAAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTG
* * * * * * * * *
22520229 TCAATTGATGGCTTTTTCTTCATGTTTCCTGATGGACACATCAAATTATAATCT-TTCTTCACTG
190 TCAATGGATGGCTTTTGCTTCACGTTTCCTAATGCAAACATCAAATTATGATCTGTT-TTAAC-C
* * * * *
22520293 AAAATGTAAAAAAAAATTCAATTTAAAACCATTTAAAAAG-TTCTAAAACCACTTAAA-ACTAGT
253 AAAA-AT-AAAAAAAATTCAATTTAAAATCATTTATAAAGATTATAAAACCACTTAAAGA-GAGT
* * *** *
22520356 AATAAGGCTTTTGAATATATGAGTGCCT
315 AACAAGGCTTTCGAAGGCATGAGTGACT
* * *
22520384 ATAAATAGACTTTTCTTGTTAATGGATGGC-TTTTCGATTCACGTCTCCCAATGCAAACATCAAA
1 ATAAATAGACTTTTCTTGTCAATGGAT-GCTTTTTC--TTCACGTTTCTCAATGCAAACATCAAA
* * * * * *
22520448 TTATGAT-TTATTTTAACTAAAAGTGTGAATAAAATTTAATTTAAAATCATTT-TAAAAGTTATA
63 TTATGATCTT-TTTTAACCAAAAATG-AAAAAAAAATTAATTTAAAATCATTTATAAATGTTATA
* * * * * *
22520511 AATCCACTTAAAGGGAGAAAGATGGCTTTTGAGGGCATGAGTGACTATAAATGGACTTTTTTTGT
126 AATCCACTTAAAGTGAGTAACAAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGT
* * * * * * * * * *
22520576 TAATGAATGGTTTTTGCTTCATC-TTTCATGATGCATACATCGAATTACGATTTGTTTTAATCAA
191 CAATGGATGGCTTTTGCTTCA-CGTTTCCTAATGCAAACATCAAATTATGATCTGTTTTAACCAA
* * * * * * * * * * *
22520640 AAA-GAGAAAATTTTAATTTTAAAATTATTTAT-ATGATTATAAAACTATTTAAAGTGACTAACG
255 AAATAAAAAAAATTCAA-TTTAAAATCATTTATAAAGATTATAAAACCACTTAAAGAGAGTAACA
*
22520703 AGGCTTTC-AAGGGCATCAGTGACT
319 AGGCTTTCGAA-GGCATGAGTGACT
* * * *
22520727 ATAAATAGACTTTTCTTGTCAATGGATGGTTTTCGCTTCACGTTT-TCCAATGCAAACAACAAAC
1 ATAAATAGACTTTTCTTGTCAATGGATGCTTTT-TCTTCACGTTTCT-CAATGCAAACATCAAAT
* * *
22520791 TATGATCTCTTTTAACCAAAAATGAAAAAAAAAATCAAATTAAAATCATTTATAAGA-G-TATAA
64 TATGATCTTTTTTAACCAAAAATG-AAAAAAAAATTAATTTAAAATCATTTATAA-ATGTTATAA
* * * * * *
22520854 AACCA-TATGAAGTGAGTAA-ATAGGCTTTTGAGGGCATGAGTGGCTATAAATAGACTTTTCTTC
127 ATCCACT-TAAAGTGAGTAACA-AGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTG
*** * * *** * * *
22520917 TCAATGGATAATTTTTGCTTCACGTTTCCCAATACAAACAAGGAACTACGATCTCTTTTAACCAA
190 TCAATGGATGGCTTTTGCTTCACGTTTCCTAATGCAAACATCAAATTATGATCTGTTTTAACCAA
* * * *
22520982 AACTGAAAAAAGAATTCAAATTGAAATCATTTAT-AAGATTATAAAACCA-TATAAAGTGAGTAA
255 AAAT-AAAAAA-AATTCAATTTAAAATCATTTATAAAGATTATAAAACCACT-TAAAGAGAGTAA
22521045 ATGGGCTTTT
Statistics
Matches: 4620, Mismatches: 945, Indels: 482
0.76 0.16 0.08
Matches are distributed among these distances:
339 6 0.00
340 40 0.01
341 611 0.13
342 1059 0.23
343 1257 0.27
344 788 0.17
345 666 0.14
346 183 0.04
347 10 0.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (342 bp):
ATAAATAGACTTTTCTTGTCAATGGATGCTTTTTCTTCACGTTTCTCAATGCAAACATCAAATTA
TGATCTTTTTTAACCAAAAATGAAAAAAAAATTAATTTAAAATCATTTATAAATGTTATAAATCC
ACTTAAAGTGAGTAACAAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATG
GATGGCTTTTGCTTCACGTTTCCTAATGCAAACATCAAATTATGATCTGTTTTAACCAAAAATAA
AAAAAATTCAATTTAAAATCATTTATAAAGATTATAAAACCACTTAAAGAGAGTAACAAGGCTTT
CGAAGGCATGAGTGACT
Found at i:22521045 original size:172 final size:170
Alignment explanation
Indices: 22514896--22521054 Score: 4647
Period size: 172 Copynumber: 35.9 Consensus size: 170
22514886 CAACATGCCA
* * *
22514896 ATAAATAGACTTTTAC-TGTCAATGAATGGCTTTTGCTTCACGTTTCTCAATGCAAACATCAAAT
1 ATAAATAGACTTTT-CTTGTCAATGGATGGTTTTTGCTTCACGTTTCCCAATGCAAACATCAAAT
* * * * *
22514960 TATGATCTGTCTTAACCAAAAATGTAAAAAAATTTAATTTAAAATCATTTA-AAAAGTTATAAAT
65 TATGATCTGTTTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTATAAGA-TTATAAAA
* * *
22515024 CCACTTAAAATGAGTGAAA-AGGCTTTCGAAGGCATGAGTAACT
129 CCA-TTAAAGTGAGT-AAATAGGCTTTTGAAGGCATGAGTGACT
* * * * * * ***
22515067 ATAAATGGACTTTTCTTGTTAATAGATGGCTTTCGCTTCATGTTTCATGATGCAAACATCAAATT
1 ATAAATAGACTTTTCTTGTCAATGGATGGTTTTTGCTTCACGTTTCCCAATGCAAACATCAAATT
* * * *
22515132 ATGATTTGTTTTAACCAAAAATG-AAAATAATTCAATTTTAAAATCATTCA-AGAGATTATAAGA
66 ATGATCTGTTTTAACCAAAAATGAAAAAAAATTCAA-TTTAAAATCATTTATA-AGATTATAAAA
* * * ** * *
22515195 CCTTTTAAAG-GAACTAACTAGGCTTTCAAAGACATTAGTGACT
129 CC-ATTAAAGTG-AGTAAATAGGCTTTTGAAGGCATGAGTGACT
* * * * *** * * *
22515238 ATAAATGGACTTTTCTTATCAATTGATGGTTTTTGCTTCATGTTTCTTGATGGAAATAACAAATT
1 ATAAATAGACTTTTCTTGTCAATGGATGGTTTTTGCTTCACGTTTCCCAATGCAAACATCAAATT
* * * * * * * *
22515303 ATAACCTTTTTTAACTAAAAATGAAAAAGAAATTGAATTTGAAATCATTTATAAGATTATAACAT
66 ATGATCTGTTTTAACCAAAAATGAAAAA-AAATTCAATTTAAAATCATTTATAAGATTATAAAAC
* * *
22515368 CATTTAAAGTGAGTAAAAAGGCTTTTGAAGTCATGAGTGACA
130 CA-TTAAAGTGAGTAAATAGGCTTTTGAAGGCATGAGTGACT
* * * ** * *
22515410 ATCAATGGACTTTTCTTGTCAATGGATTGCTTTCAG-TTCACATTTCTCAATGCAAACATCAAAT
1 ATAAATAGACTTTTCTTGTCAATGGA-TGGTTTTTGCTTCACGTTTCCCAATGCAAACATCAAAT
* * *
22515474 TACGATCTGTTTTAACCAACAATGTAAAAAAAATTCAATTTAAAATCATTTA-AAAAGTTATAAA
65 TATGATCTGTTTTAACCAAAAATG-AAAAAAAATTCAATTTAAAATCATTTATAAGA-TTATAAA
* * *
22515538 TCCACTTAAACG-GAGT-AATAAGGCTTTCGAAGGCATGAGTGATT
128 ACCA-TTAAA-GTGAGTAAAT-AGGCTTTTGAAGGCATGAGTGACT
* * * * * * *
22515582 ATAAATAGACTTTTCTTGTGAACGTATGACTTTTT-CCTCACATTT-CCATGTGCAAACATCAAA
1 ATAAATAGACTTTTCTTGTCAATGGATG-GTTTTTGCTTCACGTTTCCCA-ATGCAAACATCAAA
** * *
22515645 TTATGATCACTTTTAACCAAAAAAGAGAAAAAAATTCAATTTTAAAATCATTTATACGATTATAA
64 TTATGATCTGTTTTAACCAAAAATGA-AAAAAAATTCAA-TTTAAAATCATTTATAAGATTATAA
* * *
22515710 AACCATGTAAAGTGACTAACTAGGCTTTTGAAGGTATGAGTGACT
127 AACCAT-TAAAGTGAGTAAATAGGCTTTTGAAGGCATGAGTGACT
* ** ** * * ** * *
22515755 ATAAATGGACTTTTCCTT-TCAATGGATGGTGGTCACTTCACTTTTCCTAACACAAATAACAAAT
1 ATAAATAGACTTTT-CTTGTCAATGGATGGTTTTTGCTTCACGTTTCCCAATGCAAACATCAAAT
* * * *
22515819 TATGATCTGTTTTAACCAAAAATGAAAAAAAAATTCAAATTAAAATTATTTGTAAGATTAGAAAA
65 TATGATCTGTTTTAACCAAAAATG-AAAAAAAATTCAATTTAAAATCATTTATAAGATTATAAAA
* ** * * * *
22515884 CCATCTGAAGCAAGTAAATAGGCTTTTGCAGGCATTAATTACT
129 CCAT-TAAAGTGAGTAAATAGGCTTTTGAAGGCATGAGTGACT
* * * * * * *
22515927 ATAAATAGACATTTCTTGTCAATGGATTGCTTCTGTTTCACGTTTCTCAATGAAAACATCAAATT
1 ATAAATAGACTTTTCTTGTCAATGGATGGTTTTTGCTTCACGTTTCCCAATGCAAACATCAAATT
* *
22515992 ATGATTTGTTTTAACCAAAAAT-ATAAAATAAATTCAATTTAAAATCATTTCAAAAG-TTATAAA
66 ATGATCTGTTTTAACCAAAAATGA-AAAA-AAATTCAATTTAAAATCATTT-ATAAGATTATAAA
* * * ** * *
22516055 TCCACTTAAAGCGAGTAACA-AGGCTGTCAAAAGCATGAGTTACT
128 ACCA-TTAAAGTGAGTAA-ATAGGCTTTTGAAGGCATGAGTGACT
** * * * * * ** * * *
22516099 ATACTTGGACTTTTCTTATCAATGAATGGCTTTTT-CTTTACATTTTTCGATGCAAACAACAAGT
1 ATAAATAGACTTTTCTTGTCAATGGATGG-TTTTTGCTTCACGTTTCCCAATGCAAACATCAAAT
* * * * * *
22516163 TAAGATCTGCTTTAACCAACAAT-AAAAAAAATTCAATTTGAAATCACTTATAA-AGTTATAAAT
65 TATGATCTGTTTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTATAAGA-TTATAAAA
* * *
22516226 CCAATTAAAGAGAATAACA-AGGCTTTTGAAGGCATAAGTGACT
129 CC-ATTAAAGTGAGTAA-ATAGGCTTTTGAAGGCATGAGTGACT
* * * * * *
22516269 ATAACTTGACTTTTCTTGTCAACGGATAGCTTTTT-CTTCATGTTTCTCAATGCAAACATCAAAT
1 ATAAATAGACTTTTCTTGTCAATGGAT-GGTTTTTGCTTCACGTTTCCCAATGCAAACATCAAAT
* *** **
22516333 TATGATCTTTTTTAATTGAAAATGTAAAAAAAAAACTAATTTAAAATCATTTA-AA-ATGTAATA
65 TATGATCTGTTTTAACCAAAAATG-AAAAAAAATTC-AATTTAAAATCATTTATAAGAT-T-ATA
* **
22516396 AATCCACTTAAAAG-GAGTAAGA-AGGCTTTCAAAGGCATGAGTGACT
126 AAACCA-TT-AAAGTGAGTAA-ATAGGCTTTTGAAGGCATGAGTGACT
* * * * **
22516442 ATAAATGGACTTTTATTGTCAATGGATGGCTTTTGTTTCACGTTTCGTAATGCAAACATCAAATT
1 ATAAATAGACTTTTCTTGTCAATGGATGGTTTTTGCTTCACGTTTCCCAATGCAAACATCAAATT
* * * *
22516507 ATG-TACTGTTTTAATCAGAAAA-G-AGAAAAATTTAATTTTAAAATCATTTATACGATTATAAA
66 ATGAT-CTGTTTTAACCA-AAAATGAAAAAAAATTCAA-TTTAAAATCATTTATAAGATTATAAA
* * * * *
22516569 ACCATTTAAAGTAACTAACTAGGCTTTCG-AGGGATGAGTGTGACT
128 ACCA-TTAAAGTGAGTAAATAGGCTTTTGAAGGCATGA--GTGACT
* * *
22516614 ATAAATAGACTTTTCTTGTCAATGGATGGTTTTCGCTTCACGTTTCCCAATGCAAACAACAAACT
1 ATAAATAGACTTTTCTTGTCAATGGATGGTTTTTGCTTCACGTTTCCCAATGCAAACATCAAATT
* * * * *
22516679 ATGATCTCTTTTAACCAAAAATGAGAAAAAATTCAAATTGAAATCATTTATAAAATTATAAAACC
66 ATGATCTGTTTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTATAAGATTATAAAACC
* * *
22516744 ATATGAAGGGAGTAAATAGGCTTTTAAAGGCATGAGTGACT
131 AT-TAAAGTGAGTAAATAGGCTTTTGAAGGCATGAGTGACT
* * * *
22516785 ATAAATAGACTTTTCTTGCCAATGGATGGTTTTTGCTTCACATTTCCCAATGCAAACAACAAACT
1 ATAAATAGACTTTTCTTGTCAATGGATGGTTTTTGCTTCACGTTTCCCAATGCAAACATCAAATT
* * * ** ** * *
22516850 ATGATATCTTTTAGCCAAAAATG-AAAAGGATTCAAACTGAAATTATTTATAAGATTATAAAAAC
66 ATGATCTGTTTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTATAAGATTAT-AAAAC
* * *
22516914 CATCTAAAGTGAGTAAATAGGCTTTTGAAGGAATTAGTTACT
130 CAT-TAAAGTGAGTAAATAGGCTTTTGAAGGCATGAGTGACT
** * * * * * *
22516956 ATAAATAGACTTTGATTGTCAATGGATGGCTTTTGTTTCACATTTCTCGATGTAAACATCAAATT
1 ATAAATAGACTTTTCTTGTCAATGGATGGTTTTTGCTTCACGTTTCCCAATGCAAACATCAAATT
* * * * * *
22517021 GTAATCTGTTTCATCCAAAACCAT-AAAACAAATTCAATTTAAAATCATTTA-AAAAGTTATAAA
66 ATGATCTGTTTTAACCAAAA--ATGAAAAAAAATTCAATTTAAAATCATTTATAAGA-TTATAAA
* * ** *
22517084 TCCACTTAAAGCGAGT-AATAAGGCTTTCAAAGGCATGAGTTACT
128 ACCA-TTAAAGTGAGTAAAT-AGGCTTTTGAAGGCATGAGTGACT
* * * * *
22517128 AGAACTAGACTTTTCTTGTCAATGGATGGCTTTTT-CCTCACGTTTTCTAATGCAAACA--AAAT
1 ATAAATAGACTTTTCTTGTCAATGGATGG-TTTTTGCTTCACGTTTCCCAATGCAAACATCAAA-
* * * * * *
22517190 GTTATGATCTGCTTTAACCAAAAATGGAAAAGAAATTTAGTCTAAAATCATTTGTAA-AGTTATA
64 -TTATGATCTGTTTTAACCAAAAAT-GAAAAAAAATTCAATTTAAAATCATTTATAAGA-TTATA
* * * * ** *
22517254 AATCCAGTTAAAGAGAATAACA-AGGATTTCAAAAGCATGAGTGACT
126 AAACCA-TTAAAGTGAGTAA-ATAGGCTTTTGAAGGCATGAGTGACT
* * *
22517300 ATAACTAGACTTTTCTTATCAATGGATGGCTTTTT-CTTCACGTTT-CTAATGC-AACATCAAAT
1 ATAAATAGACTTTTCTTGTCAATGGATGG-TTTTTGCTTCACGTTTCCCAATGCAAACATCAAAT
* ** * * *
22517362 TATGATCTTTTTTAATTGAAAATAT-AAAACAAATTTC--TTTCAAAATCATTTA-AAAAGTTTT
65 TATGATCTGTTTTAA-CCAAAA-ATGAAAA-AAAATTCAATTT-AAAATCATTTATAAGA-TTAT
* * * * *
22517423 AAAACCACTTAAAGTGAGTAACA-AGACTTTTGAAGGTATAAATGCCT
125 AAAACCA-TTAAAGTGAGTAA-ATAGGCTTTTGAAGGCATGAGTGACT
* * * * ***
22517470 ATAAA-AGGACTTTTCTTGTCAATGGATAGCTTTTGCTCCAAGTTTCATGATGCAAACATCAAAT
1 ATAAATA-GACTTTTCTTGTCAATGGATGGTTTTTGCTTCACGTTTCCCAATGCAAACATCAAAT
* * * * *
22517534 TATGATTTGTTTTAACCAAAAATG-AGAATAATTCAATTTTAAAATCATTCAAAAGATTATAAAA
65 TATGATCTGTTTTAACCAAAAATGAAAAAAAATTCAA-TTTAAAATCATTTATAAGATTATAAAA
* * * * * * *
22517598 CCTTTTAAAG-GAACTAACTAGGCTTTCGAATGCATTAGTGATT
129 CC-ATTAAAGTG-AGTAAATAGGCTTTTGAAGGCATGAGTGACT
* * * **** * * *
22517641 ATAAATGGACTTTTCTTGTCAATGGATGGTTTTCGCTTCATGTTTTTTGATGGAAATAACAAATT
1 ATAAATAGACTTTTCTTGTCAATGGATGGTTTTTGCTTCACGTTTCCCAATGCAAACATCAAATT
* * * * * *
22517706 ATAATCTGTTTTAACTAAAAATGAAAAATAATTGAATTTGAAATCATTTATTAGATTATAAAACC
66 ATGATCTGTTTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTATAAGATTATAAAACC
* ** ** * *
22517771 ATTTGAAGCAAACAAATAGGCTTTTGAAGTCAAGAGTGACT
131 A-TTAAAGTGAGTAAATAGGCTTTTGAAGGCATGAGTGACT
* * * *** * *
22517812 ATAAATGGACTTTTCTTGTCAATGGATAGCTTCCACTTCATGTTTCTCAATGCAAACATCAAATT
1 ATAAATAGACTTTTCTTGTCAATGGATGGTTTTTGCTTCACGTTTCCCAATGCAAACATCAAATT
* * * * * * * *
22517877 ACGATCTGTTTTAACCAACAATGCAAAAGAAATTCAATTCAAAATTATTTA-AAAAGTAATAAAT
66 ATGATCTGTTTTAACCAAAAATG-AAAAAAAATTCAATTTAAAATCATTTATAAGA-TTATAAAA
* * *
22517941 CCGCTTAAAGTGAGTAACA-AGGCTATCGAAGGCATGAGCT-ACT
129 CC-ATTAAAGTGAGTAA-ATAGGCTTTTGAAGGCATGAG-TGACT
** * * * * * * * * *
22517984 ATACTTGGACTTTTCTTATTAATGGAAGGCTTTT-CTTCACATTTTCCAATGCAAACAACAAGTT
1 ATAAATAGACTTTTCTTGTCAATGGATGGTTTTTGCTTCACGTTTCCCAATGCAAACATCAAATT
* * * * * *
22518048 ATGATATGCTTTAACTAAAACTGAAAAAAAAAATTCAATTTGAAATCACTTATAA-AGTTATAAA
66 ATGATCTGTTTTAACCAAAAATG--AAAAAAAATTCAATTTAAAATCATTTATAAGA-TTATAAA
* * * ** **
22518112 TCCAATTAAAGAGAAT-AATAACACTTTCAAAGGCATGAGTGACT
128 ACC-ATTAAAGTGAGTAAAT-AGGCTTTTGAAGGCATGAGTGACT
* * * * * **** *
22518156 ATTACTAGACTTTTCTTGTCAATGAATGGCTTTTGCTTCATGTTTTATGACGCAAACATCAAATT
1 ATAAATAGACTTTTCTTGTCAATGGATGGTTTTTGCTTCACGTTTCCCAATGCAAACATCAAATT
* * * * * *
22518221 ATGATCTCTTTTAATCAAAAAAG-AGAAAAATTAAATTTTAAAATCATTTATACGATTATAAAAC
66 ATGATCTGTTTTAACCAAAAATGAAAAAAAATTCAA-TTTAAAATCATTTATAAGATTATAAAAC
* * * * * **
22518285 TATTTAAAGAG-GCTAACTAGGCTTTCGAGGGCATGAGTGGTT
130 CA-TTAAAGTGAG-TAAATAGGCTTTTGAAGGCATGAGTGACT
* * ** * * *
22518327 ATAAATAGACTTTTCTTGTAAATTGATGGTTTTTCGCTTCGGGTTTCGCAATGCAAACAACAAAC
1 ATAAATAGACTTTTCTTGTCAATGGATGGTTTTT-GCTTCACGTTTCCCAATGCAAACATCAAAT
* * *
22518392 TATGATCTTTTTTAACCAAAAATGAAAAAAAATTCAAATTAAAATCATTTATAAGATTATAAAAT
65 TATGATCTGTTTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTATAAGATTATAAAAC
* * * *
22518457 CATATGAAGTGAGAAAATAGGCTTTTGATGGTATGAGTGACT
130 CAT-TAAAGTGAGTAAATAGGCTTTTGAAGGCATGAGTGACT
* * * * *
22518499 ATAAATGGACTTTTCTTGTCAATGGATGGTTTTCGCTTCACGTTTCCTAATGCAAACAACAAACT
1 ATAAATAGACTTTTCTTGTCAATGGATGGTTTTTGCTTCACGTTTCCCAATGCAAACATCAAATT
* * *** *
22518564 ATGATCTCTTTTAA-TAAAAATTTTTAAAAAATTCAAATTAAAATCATTTATAAGATTATAAAAC
66 ATGATCTGTTTTAACCAAAAA-TGAAAAAAAATTCAATTTAAAATCATTTATAAGATTATAAAAC
* * * * *
22518628 CATCTGAAGGGAGCAAATAGGCTTTTAAAGGCATTAGTGACT
130 CAT-TAAAGTGAGTAAATAGGCTTTTGAAGGCATGAGTGACT
* * * * * *** * *
22518670 ACAAATAGACTTTTCTTGTCAAGGGATGGCTTTTGTTTCATGTTTCTTGACGCAAACATTAAATT
1 ATAAATAGACTTTTCTTGTCAATGGATGGTTTTTGCTTCACGTTTCCCAATGCAAACATCAAATT
*
22518735 ATGATCTGTTTTAACCAAAACCAT-AAAAGAAATTCAATTTAAAATCATTTATAA-AGTTATAAA
66 ATGATCTGTTTTAACCAAAA--ATGAAAAAAAATTCAATTTAAAATCATTTATAAGA-TTATAAA
* * * * *
22518798 TCCACTTAAAGAGAATAACA-AGGATTTTGAAGGCATGATTGACT
128 ACCA-TTAAAGTGAGTAA-ATAGGCTTTTGAAGGCATGAGTGACT
* * * * * *
22518842 ATAACTAGAGTTTTGTTGTCAATGGATGGCTTTTT-CTTCATGTTTCTCGATGCAAACATCAAAT
1 ATAAATAGACTTTTCTTGTCAATGGATGG-TTTTTGCTTCACGTTTCCCAATGCAAACATCAAAT
* * ** *
22518906 TATGATATTTTTTAAGTAAAAATGTAAAAAAAATATTC-ATTTAAAATCATTTA-AAAAGTT-TC
65 TATGATCTGTTTTAACCAAAAATG--AAAAAAA-ATTCAATTTAAAATCATTTATAAGA-TTAT-
** * * *
22518968 AAAACCACTTAAAGCAAGT-AATAAGGCTTTGGAAGGTATGAGTGCCT
125 AAAACCA-TTAAAGTGAGTAAAT-AGGCTTTTGAAGGCATGAGTGACT
* * * * * * **
22519015 ATAAATAGACTTTTGTTGTCAATGGATAGCTTTCGTTTCACGTCTCCTGATGCAAACATCAAATT
1 ATAAATAGACTTTTCTTGTCAATGGATGGTTTTTGCTTCACGTTTCCCAATGCAAACATCAAATT
* * * *
22519080 ATGATCTATTTTAACCAAAAATGTAAAAAAAAAT-AATTTAAAATCATTTA-AAAAGTTATAAAT
66 ATGATCTGTTTTAACCAAAAATG-AAAAAAAATTCAATTTAAAATCATTTATAAGA-TTATAAAA
* * ** *
22519143 CCACTTAAAGGGAGTAAAAAGGCTTTCAAAGGCATGAATGACT
129 CCA-TTAAAGTGAGTAAATAGGCTTTTGAAGGCATGAGTGACT
* * * ***
22519186 ATAAATGGACTTTTCTTGTCAATGGATGGCTTGTGCTTCACGTTTCGTGATGCAAACATCAAATT
1 ATAAATAGACTTTTCTTGTCAATGGATGGTTTTTGCTTCACGTTTCCCAATGCAAACATCAAATT
** * * * *
22519251 ATGATCTGTTTTAATGAAAAATGTAAAAGAATTCAATTTAAAATCATTTA-AATGGTTATAAATC
66 ATGATCTGTTTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTATAA-GATTATAAAAC
* * * **
22519315 CACTTAAAG-GATGTGAGA-AGGCTTTGGAAGGTATGAGTGTTT
130 CA-TTAAAGTGA-GT-AAATAGGCTTTTGAAGGCATGAGTGACT
* * *
22519357 ATAAATAGACTTTTCTTGTCAATGGATGGTTTTCGCTTCA-TTTCTCCCAATGCAAATATCAAAT
1 ATAAATAGACTTTTCTTGTCAATGGATGGTTTTTGCTTCACGTT-TCCCAATGCAAACATCAAAT
* * * * *
22519421 TATGATTTGTTTTAACAAAAAATGTAAAAAAAA-T-AATTTAAAATCATTTAAAAGGTTATAAAT
65 TATGATCTGTTTTAACCAAAAATG-AAAAAAAATTCAATTTAAAATCATTTATAAGATTATAAAA
* *
22519484 CC-TCTAAAAAG-GTGTAAGA-AGGCTTTCGAAGGCATGAGTGACT
129 CCAT-T--AAAGTGAGTAA-ATAGGCTTTTGAAGGCATGAGTGACT
* * * * * * **
22519527 ATAAATGGACTTGTCTTGTTAATGGATGGCTTTTGCTTCACGTTTCGCTATGCAAACATTGAATT
1 ATAAATAGACTTTTCTTGTCAATGGATGGTTTTTGCTTCACGTTTCCCAATGCAAACATCAAATT
** * ** ** * * * *
22519592 ATGATCCATTTAAATAAAAAATG-AGTATAATTCAAATTTTAAATCAATTATATGATTATAAAAC
66 ATGATCTGTTTTAACCAAAAATGAAAAAAAATTC-AATTTAAAATCATTTATAAGATTATAAAAC
* * * * * * * *
22519656 CATTTAGAGTGACTAATTAGGCTTTCGAGGGAATAAGTGACA
130 CA-TTAAAGTGAGTAAATAGGCTTTTGAAGGCATGAGTGACT
** * * *
22519698 ATAAATAGACTTTT-TCTGTCAATGGATGGTTTTCACTACACGTTTCCCAATGCAAACAACAAAC
1 ATAAATAGACTTTTCT-TGTCAATGGATGGTTTTTGCTTCACGTTTCCCAATGCAAACATCAAAT
* * * *
22519762 TATGATCTGTTTTAACCAAAAATG-AAAAACATTCAAATTGAAATCATTTATAAGATTAGAAAAC
65 TATGATCTGTTTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTATAAGATTATAAAAC
* *
22519826 CATCTGAA-TCGAGTAAATAGGCTTTTGCAA-GCATTAGTGACT
130 CAT-TAAAGT-GAGTAAATAGGCTTTTG-AAGGCATGAGTGACT
* * * * * ** * * *
22519868 ATAAATATACATTTCTTGTCAATGGATGGCTTTTGTTTCACGCTTCCTGATGAAAACAACAAATC
1 ATAAATAGACTTTTCTTGTCAATGGATGGTTTTTGCTTCACGTTTCCCAATGCAAACATCAAATT
* ** ** * *
22519933 ATGATTTGTTTTAATGAAAGCT-ACAAAAAAATTCAATTTAAAATCATTTCAAAAG-TTATAAAT
66 ATGATCTGTTTTAACCAAAAATGA-AAAAAAATTCAATTTAAAATCATTT-ATAAGATTATAAAA
* * ** *
22519996 CCACTTAAAGCGAGTAACA-AGGCTGTCAAAGGCATGAGTTACT
129 CCA-TTAAAGTGAGTAA-ATAGGCTTTTGAAGGCATGAGTGACT
** * * ** *
22520039 ATACCT-GAACTTTTCTTGTCAAAGGATGGCTTTTT-CTTCACGTTTTCTGATGCAAACAAT-AT
1 ATAAATAG-ACTTTTCTTGTCAATGGATGG-TTTTTGCTTCACGTTTCCCAATGCAAAC-ATCAA
*
22520101 GTTATGATCTGTTTTAACCAAAAATGAAAAAAATATTCAATTTAAAAAT-ATTTATAA-AGTTAT
63 ATTATGATCTGTTTTAACCAAAAATGAAAAAAA-ATTCAATTT-AAAATCATTTATAAGA-TTAT
* * * *
22520164 AAATCAACTTAAAGAGAATAACA-AGGCTTTTGAAGGCATGAGTGACT
125 AAAACCA-TTAAAGTGAGTAA-ATAGGCTTTTGAAGGCATGAGTGACT
* * * * ** * *
22520211 ATAACTGGACTTTTCTTGTCAATTGATGGCTTTTT-CTTCATGTTTCCTGATGGACACATCAAAT
1 ATAAATAGACTTTTCTTGTCAATGGATGG-TTTTTGCTTCACGTTTCCCAATGCAAACATCAAAT
* * ** * * *
22520275 TATAATCT-TTCTTCACTGAAAATGTAAAAAAAAATTCAATTTAAAACCATTTA-AAAAGTTCTA
65 TATGATCTGTT-TTAACCAAAAATG--AAAAAAAATTCAATTTAAAATCATTTATAAGA-TTATA
* *** *
22520338 AAACCACTTAAAACT-AGT-AATAAGGCTTTTGAATATATGAGTGCCT
126 AAACCA-TT-AAAGTGAGTAAAT-AGGCTTTTGAAGGCATGAGTGACT
* * * *
22520384 ATAAATAGACTTTTCTTGTTAATGGATGGCTTTTCGATTCACGTCTCCCAATGCAAACATCAAAT
1 ATAAATAGACTTTTCTTGTCAATGGATGG-TTTTTGCTTCACGTTTCCCAATGCAAACATCAAAT
* * * * * * * *
22520449 TATGATTTATTTTAACTAAAAGTGTGAATAAAATTTAATTTAAAATCATTT-TAAAAGTTATAAA
65 TATGATCTGTTTTAACCAAAAATG-AAAAAAAATTCAATTTAAAATCATTTATAAGA-TTATAAA
* * * *
22520513 TCCACTTAAAGGGAG-AAAGATGGCTTTTGAGGGCATGAGTGACT
128 ACCA-TTAAAGTGAGTAAATA-GGCTTTTGAAGGCATGAGTGACT
* * * * *** * *
22520557 ATAAATGGACTTTTTTTGTTAATGAATGGTTTTTGCTTCATC-TTTCATGATGCATACATCGAAT
1 ATAAATAGACTTTTCTTGTCAATGGATGGTTTTTGCTTCA-CGTTTCCCAATGCAAACATCAAAT
* * * * * * * *
22520621 TACGATTTGTTTTAATCAAAAA-G-AGAAAATTTTAATTTTAAAATTATTTATATGATTATAAAA
65 TATGATCTGTTTTAACCAAAAATGAAAAAAAATTCAA-TTTAAAATCATTTATAAGATTATAAAA
* * ** * *
22520684 CTATTTAAAGTGACTAACGAGGC-TTTCAAGGGCATCAGTGACT
129 CCA-TTAAAGTGAGTAAATAGGCTTTTGAA-GGCATGAGTGACT
* * * *
22520727 ATAAATAGACTTTTCTTGTCAATGGATGGTTTTCGCTTCACGTTTTCCAATGCAAACAACAAACT
1 ATAAATAGACTTTTCTTGTCAATGGATGGTTTTTGCTTCACGTTTCCCAATGCAAACATCAAATT
* * * *
22520792 ATGATCTCTTTTAACCAAAAATGAAAAAAAAAATCAAATTAAAATCATTTATAAGAGTATAAAAC
66 ATGATCTGTTTTAACCAAAAATG-AAAAAAAATTCAATTTAAAATCATTTATAAGATTATAAAAC
* * *
22520857 CATATGAAGTGAGTAAATAGGCTTTTGAGGGCATGAGTGGCT
130 CAT-TAAAGTGAGTAAATAGGCTTTTGAAGGCATGAGTGACT
* ** * *** *
22520899 ATAAATAGACTTTTCTTCTCAATGGATAATTTTTGCTTCACGTTTCCCAATACAAACAAGGAACT
1 ATAAATAGACTTTTCTTGTCAATGGATGGTTTTTGCTTCACGTTTCCCAATGCAAACATCAAATT
* * * * *
22520964 ACGATCTCTTTTAACCAAAACTGAAAAAAGAATTCAAATTGAAATCATTTATAAGATTATAAAAC
66 ATGATCTGTTTTAACCAAAAATGAAAAAA-AATTCAATTTAAAATCATTTATAAGATTATAAAAC
*
22521029 CATATAAAGTGAGTAAATGGGCTTTT
130 CAT-TAAAGTGAGTAAATAGGCTTTT
22521055 TGTCACAACT
Statistics
Matches: 4783, Mismatches: 998, Indels: 413
0.77 0.16 0.07
Matches are distributed among these distances:
168 5 0.00
169 36 0.01
170 680 0.14
171 1588 0.33
172 1709 0.36
173 691 0.14
174 72 0.02
175 2 0.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (170 bp):
ATAAATAGACTTTTCTTGTCAATGGATGGTTTTTGCTTCACGTTTCCCAATGCAAACATCAAATT
ATGATCTGTTTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTATAAGATTATAAAACC
ATTAAAGTGAGTAAATAGGCTTTTGAAGGCATGAGTGACT
Found at i:22525238 original size:43 final size:43
Alignment explanation
Indices: 22525175--22525271 Score: 124
Period size: 43 Copynumber: 2.3 Consensus size: 43
22525165 CTTATAGTCA
* *
22525175 GGTCATCATCGACTTTTGCGCAATCTCTACTCACACATAGCCG
1 GGTCATCATCGACTTATGCGCAATCCCTACTCACACATAGCCG
* * * *
22525218 GGTCATCATC-AGCTTATGCGCACTCCCTACTCGCATATAGTCG
1 GGTCATCATCGA-CTTATGCGCAATCCCTACTCACACATAGCCG
22525261 GGTCATCATCG
1 GGTCATCATCG
22525272 TCACACAACA
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
42 1 0.02
43 45 0.98
ACGTcount: A:0.22, C:0.32, G:0.19, T:0.28
Consensus pattern (43 bp):
GGTCATCATCGACTTATGCGCAATCCCTACTCACACATAGCCG
Found at i:22526907 original size:172 final size:169
Alignment explanation
Indices: 22526612--22527476 Score: 692
Period size: 172 Copynumber: 5.1 Consensus size: 169
22526602 GGGTACTACA
* * * *
22526612 CTTTTGAAGGCATTAGTGACTATAAATAGACTTTTCTTGCCAATAGATGGCTTTTGT-TTCACGT
1 CTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTT-TCTTCACGT
* * * * *
22526676 TTCTCGATGCAAACATCAAATTATGATCTATTTTAACCAAAACCAT-AAAGGAAATTCAATTTAA
65 TTTTCAATGCAAACA-AAAATTATGATCTATTTTAACTAAAA--ATGAAA-AAAATTCAATTTAA
*
22526740 AATCATTTAAAAAGTTATAAATCCGCTTAAAGCGAGTAACAAGG
126 AATCATTTAAAAAGTTATAAATCCACTTAAAGCGAGTAACAAGG
* * * *
22526784 CTTTCAAAGGCATGAGTTACTATAATTGGACTTTTCTTGTCAATGGATGGCTTTTTCTTCACGTT
1 CTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTTCTTCACGTT
22526849 TTTCAATGCAAACAAAAAGTTATGATCT-TCTTTAACTAAAAATGGAAAAAATATTCAATTTAAA
66 TTTCAATGCAAACAAAAA-TTATGATCTAT-TTTAACTAAAAAT-GAAAAAA-ATTCAATTTAAA
* * *
22526913 ATCATTTATAAAGTTATAAATCCACTTAAAGAGAATAACAAGG
127 ATCATTTAAAAAGTTATAAATCCACTTAAAGCGAGTAACAAGG
* ** * * * * * *
22526956 ATTTTAAAGCCATGAGTGACTATAACTAGACCTTTCTTGTTAATGGATGGCTTTTGCTTCA--TG
1 CTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTTCTTCACGTT
* *** * * * * * *
22527019 CTTC-A--C-AA-TGTAATTTTGATATGTTTT-ACTTAAAAATGAGAATAATTCCATTTTAAAAT
66 TTTCAATGCAAACAAAAATTATGATCTATTTTAAC-TAAAAATGAAAAAAATT-CAATTTAAAAT
* ** * * * * **
22527078 CATTTATATGGTTATAAAACCATTTAAAGTGACTAATTAGG
129 CATTTAAAAAGTTATAAATCCACTTAAAGCGAGTAACAAGG
* * * * * ** *
22527119 C-TTCGGAGGGCATGAGTGACTATAAATGGACTTTTCTTATTAATGGATGGGTTTCACTTCATGT
1 CTTTC-GAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTTCTTCACGT
** * * * * * * *
22527183 TTCCCAATGCACACAACAAACTATGATATGTTTTAA-TCGAAAATGAAAAAAATTCAAATTGAAA
65 TTTTCAATGCAAACAA-AAATTATGATCTATTTTAACT-AAAAATGAAAAAAATTCAATTTAAAA
** *
22527247 TCATTT-GTAAGATTGTATAA-CCA-TCTAAAGCGAGTAA-ATA-G
128 TCATTTAAAAAG-TTATA-AATCCACT-TAAAGCGAGTAACA-AGG
* *
22527288 CTTTTGAAGGCATTAGTGACTATAAATAGAC-TTTCATTGTCAATGGATGGCTTTTGT-TTCACG
1 CTTTCGAAGGCATGAGTGACTATAAATAGACTTTTC-TTGTCAATGGATGGCTTTT-TCTTCACG
* ** * *
22527351 TTTCTT-GATGCAAACATTGAACTATGATCTATTTTAACCAAAAATGTAAAAGAAATTCAATTTA
64 TTT-TTCAATGCAAACA-AAAATTATGATCTATTTTAACTAAAAATG-AAAA-AAATTCAATTTA
* *
22527415 AAATTATTTAAAAAGTTATAAATCCACTTAAAGTGAGTAACAAGG
125 AAATCATTTAAAAAGTTATAAATCCACTTAAAGCGAGTAACAAGG
*
22527460 CTATCGAAGGCATGAGT
1 CTTTCGAAGGCATGAGT
22527477 TAATGAAAAA
Statistics
Matches: 546, Mismatches: 110, Indels: 74
0.75 0.15 0.10
Matches are distributed among these distances:
162 5 0.01
163 96 0.18
164 17 0.03
165 5 0.01
166 3 0.01
167 1 0.00
168 5 0.01
169 82 0.15
170 46 0.08
171 73 0.13
172 213 0.39
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.35
Consensus pattern (169 bp):
CTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTTCTTCACGTT
TTTCAATGCAAACAAAAATTATGATCTATTTTAACTAAAAATGAAAAAAATTCAATTTAAAATCA
TTTAAAAAGTTATAAATCCACTTAAAGCGAGTAACAAGG
Found at i:22529931 original size:22 final size:21
Alignment explanation
Indices: 22529906--22529946 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
22529896 TACCTTTTTT
*
22529906 CACTTGTTTCCGTGAATTTTCA
1 CACTT-TTCCCGTGAATTTTCA
*
22529928 CACTTTTCCCTTGAATTTT
1 CACTTTTCCCGTGAATTTT
22529947 TCCACCTAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.17, C:0.24, G:0.10, T:0.49
Consensus pattern (21 bp):
CACTTTTCCCGTGAATTTTCA
Found at i:22533229 original size:15 final size:15
Alignment explanation
Indices: 22533211--22533244 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
22533201 GATTTTGGTG
22533211 TTAAAGCTTTGGATT
1 TTAAAGCTTTGGATT
* *
22533226 TTAAAGTTTTTGATT
1 TTAAAGCTTTGGATT
22533241 TTAA
1 TTAA
22533245 GGTTATTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.29, C:0.03, G:0.15, T:0.53
Consensus pattern (15 bp):
TTAAAGCTTTGGATT
Found at i:22540073 original size:172 final size:172
Alignment explanation
Indices: 22539696--22540261 Score: 590
Period size: 172 Copynumber: 3.3 Consensus size: 172
22539686 TCGTGACACA
* ** ** ** *
22539696 ATGAGTAACTATAACCAGACTTTTCTTACCAATGGATGGCTTTTTCTTCACGTTTCCCAATGAAA
1 ATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAATGCAA
* * * * *
22539761 ACAACAAATTATGATCTTTTTTAATAAAAAATGTAAAAAAAAATTAAATTCAAAATCATTTGAAA
66 ACATCAAATTATGATATGTTTTAATAAAAAATGTAAAAAAAAATTAATTTTAAAATCATTT-AAA
* * *
22539826 A-GTTTTAAAAT-CACTTAAAGCGAGTAACAAGGCTTTTGAAGGT
130 AGGTTAT-AAATCCACTTAAAG-GGGTAACAAGGCTTTCGAAGGT
* * * * * * *
22539869 ATGAGTGCCTTTAAATAGAATTTTCTTGTCAATGGATGGCTTTCGCTTTATGTCTCCCGATGCAA
1 ATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAATGCAA
*
22539934 ACATCAAATTATGATATGTTTTAACT-AAATATGTAAAAAAAAATT-ATTTTAAAATCATTTAAA
66 ACATCAAATTATGATATGTTTTAA-TAAAAAATGTAAAAAAAAATTAATTTTAAAATCATTTAAA
* *
22539997 AGGTTATAAATCCACTTAAAGGGTGTAAGAAGGCTTTCGAAGGC
130 AGGTTATAAATCCACTTAAAGGG-GTAACAAGGCTTTCGAAGGT
* * * *
22540041 ATGACTGACTATAAATAGACTTTTCCTGTCAATGGATGGCTTTTGCTTCACGTTTCGCAATGCAA
1 ATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAATGCAA
* * * * * *
22540106 GCATCGAATTATGATATGTTTTAATCAAAAATG---AGAATAATTCAATTTTAAAATCATTTATA
66 ACATCAAATTATGATATGTTTTAATAAAAAATGTAAAAAAAAATT-AATTTTAAAATCATTTAAA
* * * * * *
22540168 CGATTATAAAACCATTTAAAGCGGCTAATTAA-GCTTTCGAAGGT
130 AGGTTATAAATCCACTTAAAG-GGGTAA-CAAGGCTTTCGAAGGT
* * * *
22540212 ATGAGTAACTATGAATGGACTTTTCTTGTCAATGGATGGCTTTCACTTCA
1 ATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCA
22540262 ACTATGACTT
Statistics
Matches: 327, Mismatches: 57, Indels: 20
0.81 0.14 0.05
Matches are distributed among these distances:
169 7 0.02
171 101 0.31
172 129 0.39
173 89 0.27
174 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.35
Consensus pattern (172 bp):
ATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAATGCAA
ACATCAAATTATGATATGTTTTAATAAAAAATGTAAAAAAAAATTAATTTTAAAATCATTTAAAA
GGTTATAAATCCACTTAAAGGGGTAACAAGGCTTTCGAAGGT
Found at i:22540235 original size:171 final size:169
Alignment explanation
Indices: 22539696--22541692 Score: 1119
Period size: 171 Copynumber: 11.8 Consensus size: 169
22539686 TCGTGACACA
* ** ** * *
22539696 ATGAGTAACTATAACCAGACTTTTCTTACCAATGGATGGCTTTTTCTTCACGTTTCCCAATGAAA
1 ATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCCAATGCAA
* * * * * *
22539761 ACAACAAATTATGATCTTTTTTAATAAAAAATGTAAAAAAAAATTAAATTCAAAATCATTTGAAA
66 ACATCAAATTATGATATGTTTTAATCAAAAATG--AAAAAAAATTAATTTTAAAATCATTT-AAA
* * *
22539826 AGTTTTAAAATCACTTAAAGCGAGTAACAAGGCTTTTGAAGGT
128 AGTTATAAAACCACTTAAAGCG-GTAACAAGGCTTTCGAAGGT
* * * * * * * *
22539869 ATGAGTGCCTTTAAATAGAATTTTCTTGTCAATGGATGGCTTTCGCTTTATGTCTCCCGATGCAA
1 ATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCCAATGCAA
*
22539934 ACATCAAATTATGATATGTTTTAA-CTAAATATGTAAAAAAAAATT-ATTTTAAAATCATTTAAA
66 ACATCAAATTATGATATGTTTTAATC-AAAAATG--AAAAAAAATTAATTTTAAAATCATTTAAA
* * * *
22539997 AGGTTATAAATCCACTTAAAGGGTGTAAGAAGGCTTTCGAAGGC
128 A-GTTATAAAACCACTTAAAGCG-GTAACAAGGCTTTCGAAGGT
* * *
22540041 ATGACTGACTATAAATAGACTTTTCCTGTCAATGGATGGCTTTTGCTTCACGTTTCGCAATGCAA
1 ATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCCAATGCAA
* * * * * *
22540106 GCATCGAATTATGATATGTTTTAATCAAAAATG-AGAATAATTCAATTTTAAAATCATTTATACG
66 ACATCAAATTATGATATGTTTTAATCAAAAATGAAAAAAAATT-AATTTTAAAATCATTTAAAAG
* *
22540170 ATTATAAAACCATTTAAAGCGGCTAATTAA-GCTTTCGAAGGT
130 -TTATAAAACCACTTAAAGCGG-TAA-CAAGGCTTTCGAAGGT
* * * ** * ** *
22540212 ATGAGTAACTATGAATGGACTTTTCTTGTCAATGGATGGCTTTCACTTCAAC-TATGAC-TTGTT
1 ATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTC-ACGTTTCCCAATG--
** ** **** ** * *** * * * *
22540275 TTAAC--CAAAAAATGA-A--AACAAATTGAAATTGAAATCATTTATAAGATTATAAAACCATAT
63 CAAACATCAAATTATGATATGTTTTAATCAAAAATGAAA--AAAAATTA-ATTTTAAAATCATTT
* * ** * *
22540335 -GAAGTGAGTAAATA-GGCTT-------T--TAAGG-----GCA--T
125 AAAAGTTA-TAAA-ACCACTTAAAGCGGTAACAAGGCTTTCGAAGGT
* * * **
22540364 A--AGTGACTATAAATAGACTTTTCATATCAATGGATGGTTTTTCGCTTCACGTTTCCTGATGCA
1 ATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTT-GCTTCACGTTTCCCAATGCA
* * * * * * * * * *
22540427 AACAACAAACTACGATCTCTTTTAACCAAAAATGAAAAAGAATTCAA-ATTGAAATCATTTATAA
65 AACATCAAATTATGATATGTTTTAATCAAAAATGAAAAAAAATT-AATTTTAAAATCATTTAAAA
* * *
22540491 GATTATAAAACCA-TCTGAAGTGAGTAA-ATAGGCTTTTGAAGGT
129 G-TTATAAAACCACT-TAAAGCG-GTAACA-AGGCTTTCGAAGGT
* * * * ***
22540534 ATTAGTAACTATAAATAGACTTTTCTTGTCAATGGATCGCTTTTGTTTCACGTTTCTTTATGCAA
1 ATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCCAATGCAA
* * * * *
22540599 ACATCAAATTATGATCTATTTTAACCAAAATCAT-AAAAGAAATCCAA-TTTAAAATCATTTAAA
66 ACATCAAATTATGATATGTTTTAATCAAAA--ATGAAAAAAAAT-TAATTTTAAAATCATTT-AA
* ** * * *
22540662 AAGTTATAAATCTGCTTAAAGCGAGTAACTAGGCTTTCAAAGGC
127 AAGTTATAAAACCACTTAAAGCG-GTAACAAGGCTTTCGAAGGT
* * * * * ** *
22540706 ATGAGTTACTATAACTGGACTTTTCTTATCAATGGATGGCTTTTTCTTCACGTTTTTCGATGCAA
1 ATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCCAATGCAA
* * * * * * *
22540771 ACA-AAAAGTTATGATCTGCTTGAACCAAAAATGGAAAAAAATTCAA-TTTAAAATCATTTCTAA
66 ACATCAAA-TTATGATATGTTTTAATCAAAAATGAAAAAAAATT-AATTTTAAAATCATTT-AAA
* * * * * ** *
22540834 AGTTATAAATCCACTTAAAGAGAATAACAACGATTTTAAAGGC
128 AGTTATAAAACCACTTAAAGCG-GTAACAAGGCTTTCGAAGGT
* * ** ** *
22540877 ATGAGTGACTATAACTAGACTTTTCTTGTCAAGGGATGATTTTTTTTTTCCACGTTTCCCAATCC
1 ATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATG-GCTTTTGCTT-CACGTTTCCCAATGC
* * * * * *
22540942 AAACATCAAATTATGATCTTTTTTAATCGAAAATGTAAAAAAAAATTCA-TTCAAAATTATTTAA
64 AAACATCAAATTATGATATGTTTTAATCAAAAATG--AAAAAAAATTAATTTTAAAATCATTT-A
* * * * *
22541006 AAAGTTCTAAAATCACTTAAA-CTGAGTAATAAGGGTTTTGAAGGT
126 AAAGTTATAAAACCACTTAAAGC-G-GTAACAAGGCTTTCGAAGGT
* * * * *
22541051 ATGAGTGCCTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTCTCCCGATGCAA
1 ATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCCAATGCAA
* ** * * * *
22541116 ACATCAAATTATGATCTGTTTTGGTCAAAAATG-AGAATAATTCAATTTTTAAATCATTTATACA
66 ACATCAAATTATGATATGTTTTAATCAAAAATGAAAAAAAATT-AATTTTAAAATCATTTA-AAA
* * ** * * ** * *
22541180 TTTATAAAACTA-TTTCAGGGGACTTATTAGGCTTTCGAGGGC
129 GTTATAAAACCACTTAAAGCGG--TAACAAGGCTTTCGAAGGT
* * *
22541222 ATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGG-TTTTCACTTCATGTTTCCCAATGCA
1 ATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTT-GCTTCACGTTTCCCAATGCA
* * * * * * *
22541286 AACAACAAACTATGATCTGTTTTAACCAAAAATGAAAAAAAATTCAA-ATTGAAATCATTTATAA
65 AACATCAAATTATGATATGTTTTAATCAAAAATGAAAAAAAATT-AATTTTAAAATCATTTAAAA
* * ** *
22541350 GATTACAAAACCA-TATAAAGTGAGTAA-ATA-GCTTTTAAAGGC
129 G-TTATAAAACCACT-TAAAGCG-GTAACA-AGGCTTTCGAAGGT
* * ** * * ***
22541392 ATTAGTGACTACAAATAGACTTTAATTGTCAATGGATGGCTTTTGTTTCATGTTTCTTGATGCAA
1 ATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCCAATGCAA
* * *
22541457 AAATCAAATTATGATCTGTTTTAA-CAAAAATGTCAAAAAAATTCAA-TTTAAAATCATTTAAAA
66 ACATCAAATTATGATATGTTTTAATCAAAAATG-AAAAAAAATT-AATTTTAAAATCATTT-AAA
* * * * *
22541520 AGTTATAAATCCACTTAAAGTGAGTAACAAGGCTATCAAAGGC
128 AGTTATAAAACCACTTAAAGCG-GTAACAAGGCTTTCGAAGGT
** * * * * **
22541563 ATGAGCT-ACTATACTTGGACTTTTCTTATCAATGGATGGCTTTTTCTTCACGTTTTCTGATGCA
1 ATGAG-TGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCCAATGCA
* * * * * * *
22541627 AACAACAAGTTATGATCTGCTTTAACCAAAAAT-AAAAAGAATTCAA-TTTAAAATCACTTATAA
65 AACATCAAATTATGATATGTTTTAATCAAAAATGAAAAAAAATT-AATTTTAAAATCATTTA-AA
22541690 AGT
128 AGT
22541693 AATGAGTGCC
Statistics
Matches: 1412, Mismatches: 325, Indels: 177
0.74 0.17 0.09
Matches are distributed among these distances:
150 39 0.03
151 6 0.00
152 21 0.01
153 12 0.01
154 5 0.00
155 10 0.01
158 3 0.00
159 1 0.00
161 2 0.00
162 1 0.00
163 3 0.00
167 8 0.01
168 5 0.00
169 34 0.02
170 195 0.14
171 468 0.33
172 367 0.26
173 139 0.10
174 84 0.06
175 9 0.01
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (169 bp):
ATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCCAATGCAA
ACATCAAATTATGATATGTTTTAATCAAAAATGAAAAAAAATTAATTTTAAAATCATTTAAAAGT
TATAAAACCACTTAAAGCGGTAACAAGGCTTTCGAAGGT
Found at i:22540568 original size:172 final size:172
Alignment explanation
Indices: 22540273--22541690 Score: 1237
Period size: 171 Copynumber: 8.3 Consensus size: 172
22540263 CTATGACTTG
* * * * * *
22540273 TTTTAACCAAAAAATGAAAACAAATTGAAATTGAAATCATTTATAAGA-TTATAAAACCAT-ATG
1 TTTTAACC-AAAAATGAAAA-AAATTCAATTTAAAATCATTTATAAAAGTTATAAAACCATCTTA
* * * *
22540336 AAGTGAGTAAATAGGCTTTTAAGGGCATAAGTGACTATAAATAGACTTTTCATATCAATGGATGG
64 AAGTGAGTAAATAGGCTTTTAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGG
* *
22540401 TTTTTCGCTTCACGTTTCCTGATGCAAACAACAAACTACGATCTC
129 TTTTT-GCTTCACGTTTCCTGATGCAAACAACAAATTATGATCTC
* * * *
22540446 TTTTAACCAAAAATGAAAAAGAATTCAAATTGAAATCATTTATAAGA-TTATAAAACCATC-TGA
1 TTTTAACCAAAAATGAAAAA-AATTCAATTTAAAATCATTTATAAAAGTTATAAAACCATCTTAA
* * * * * *
22540509 AGTGAGTAAATAGGCTTTTGAAGGTATTAGTAACTATAAATAGACTTTTCTTGTCAATGGATCGC
65 AGTGAGTAAATAGGCTTTTAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGT
* * * * *
22540574 TTTTGTTTCACGTTTCTTTATGCAAACATCAAATTATGATCTA
130 TTTTGCTTCACGTTTCCTGATGCAAACAACAAATTATGATCTC
* *
22540617 TTTTAACCAAAATCAT-AAAAGAAATCCAATTTAAAATCATTTA-AAAAGTTAT-AAATC-TGCT
1 TTTTAACCAAAA--ATGAAAA-AAATTCAATTTAAAATCATTTATAAAAGTTATAAAACCAT-CT
* * * * * * *
22540678 TAAAGCGAGTAACTAGGCTTTCAAAGGCATGAGTTACTATAACTGGACTTTTCTTATCAATGGAT
62 TAAAGTGAGTAAATAGGCTTTTAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGAT
*
22540743 GGCTTTTT-CTTCACGTTT-TTCGATGCAAACAA-AAAGTTATGATCTGC
127 GG-TTTTTGCTTCACGTTTCCT-GATGCAAACAACAAA-TTATGATCT-C
* * *
22540790 -TTGAACCAAAAATGGAAAAAAATTCAATTTAAAATCATTTCT-AAAGTTATAAATCCA-CTTAA
1 TTTTAACCAAAAAT-GAAAAAAATTCAATTTAAAATCATTTATAAAAGTTATAAAACCATCTTAA
* * * * * *
22540852 AGAGAATAACA-ACGATTTTAAAGGCATGAGTGACTATAACTAGACTTTTCTTGTCAAGGGATGA
65 AGTGAGTAA-ATAGGCTTTTAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATG-
* ** ** * * *
22540916 TTTTTTTTTTCCACGTTTCCCAATCCAAACATCAAATTATGATCTT
128 GTTTTTGCTT-CACGTTTCCTGATGCAAACAACAAATTATGATCTC
* * * * * *
22540962 TTTTAATCGAAAATGTAAAAAAAAATTC-ATTCAAAATTATTTA-AAAAGTTCTAAAATCA-CTT
1 TTTTAACCAAAAATG---AAAAAAATTCAATTTAAAATCATTTATAAAAGTTATAAAACCATCTT
* * * * *
22541024 AAACTGAGT-AATAAGGGTTTTGAAGGTATGAGTGCCTATAAATAGACTTTTCTTGTCAATGGAT
63 AAAGTGAGTAAAT-AGGCTTTTAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGAT
* * * * * * *
22541088 GGCTTTCGCTTCATGTCTCCCGATGCAAACATCAAATTATGATCTG
127 GGTTTTTGCTTCACGTTTCCTGATGCAAACAACAAATTATGATCTC
*** * * * * * * *
22541134 TTTTGGTCAAAAATGAGAATAATTCAATTTTTAAATCATTTAT-ACATTTATAAAACTAT-TTCA
1 TTTTAACCAAAAATGAAAAAAATTCAA-TTTAAAATCATTTATAAAAGTTATAAAACCATCTTAA
* * * * * ** * *
22541197 GGGGACTTATTAGGCTTTCGAGGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGT
65 AGTGAGTAAATAGGCTTTTAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGT
** * ** * *
22541262 TTTCACTTCATGTTTCCCAATGCAAACAACAAACTATGATCTG
130 TTTTGCTTCACGTTTCCTGATGCAAACAACAAATTATGATCTC
* * * * *
22541305 TTTTAACCAAAAATGAAAAAAAATTCAAATTGAAATCATTTATAAGA-TTACAAAACCAT-ATAA
1 TTTTAACCAAAAATG-AAAAAAATTCAATTTAAAATCATTTATAAAAGTTATAAAACCATCTTAA
* * ** *
22541368 AGTGAGTAAATA-GCTTTTAAAGGCATTAGTGACTACAAATAGACTTTAATTGTCAATGGATGGC
65 AGTGAGTAAATAGGCTTTTAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGT
* * * *
22541432 TTTTGTTTCATGTTTCTTGATGCAAA-AATCAAATTATGATCTG
130 TTTTGCTTCACGTTTCCTGATGCAAACAA-CAAATTATGATCTC
*
22541475 TTTTAA-CAAAAATGTCAAAAAAATTCAATTTAAAATCATTTA-AAAAGTTATAAATCCA-CTTA
1 TTTTAACCAAAAATG--AAAAAAATTCAATTTAAAATCATTTATAAAAGTTATAAAACCATCTTA
* * ** * *
22541537 AAGTGAGTAACA-AGGCTATCAAAGGCATGAGCT-ACTATACTTGGACTTTTCTTATCAATGGAT
64 AAGTGAGTAA-ATAGGCTTTTAAAGGCATGAG-TGACTATAAATAGACTTTTCTTGTCAATGGAT
* *
22541600 GGCTTTTT-CTTCACGTTTTCTGATGCAAACAACAAGTTATGATCTGC
127 GG-TTTTTGCTTCACGTTTCCTGATGCAAACAACAAATTATGATCT-C
*
22541647 -TTTAACCAAAAAT-AAAAAGAATTCAATTTAAAATCACTTATAAA
1 TTTTAACCAAAAATGAAAAA-AATTCAATTTAAAATCATTTATAAA
22541691 GTAATGAGTG
Statistics
Matches: 1015, Mismatches: 180, Indels: 102
0.78 0.14 0.08
Matches are distributed among these distances:
169 26 0.03
170 152 0.15
171 381 0.38
172 310 0.31
173 55 0.05
174 81 0.08
175 10 0.01
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (172 bp):
TTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAAGTTATAAAACCATCTTAAA
GTGAGTAAATAGGCTTTTAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGTT
TTTGCTTCACGTTTCCTGATGCAAACAACAAATTATGATCTC
Found at i:22541114 original size:345 final size:339
Alignment explanation
Indices: 22540339--22541692 Score: 1152
Period size: 345 Copynumber: 3.9 Consensus size: 339
22540329 CCATATGAAG
* * * *
22540339 TGAGTAA-ATAGGCTTTTAAGGGCATAAGTGACTATAAATAGACTTTTCATATCAATGGATGGTT
1 TGAGTAATA-AGGCTTTTAAAGGCATGAGTGACTATAAATAGACTTTTCTTATCAATGGATGG-C
* * * *
22540403 TTTCGCTTCACGTTTCCTGATGCAAACAACAAACTACGATCT-CTTTTAACCAAAAATGAAAAAG
64 TTTCGCTTCACGTTTCCCGATGCAAACAACAAATTATGATCTGC-TTGAACCAAAAATGAAAAA-
* * * **
22540467 AATTCAAATTGAAATCATTTAT-AAGATTATAAAACCA-TCTGAAGTGAGTAA-ATAGGCTTTTG
127 AATTCAATTTAAAATCATTTATAAAG-TTATAAAACCACT-TAAAGTGAGTAACA-AGGCTTTCA
* * * * * ***
22540529 AAGGTATTAGTAACTATAAATAGACTTTTCTTGTCAATGGATCGCTTTTGTTTCACGTTTCTTTA
189 AAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGAT-GTTTTTATTTCACGTTTCCCAA
* * * *
22540594 TGCAAACATCAAATTATGATCTATTTTAACCAAAATCATAAAAGAAATCCAATTTAAAATCATTT
253 TGCAAACATCAAATTATGATCTATTTTAACAAAAATGA-AAAAAAAATTCAA-TTAAAATCATTT
* *
22540659 AAAAAGTTAT-AAATCTGCTTAAAGC
316 AAAAAGTTCTAAAATC-ACTTAAA-C
* * * *
22540684 -GAGTAACT-AGGCTTTCAAAGGCATGAGTTACTATAACTGGACTTTTCTTATCAATGGATGGCT
1 TGAGTAA-TAAGGCTTTTAAAGGCATGAGTGACTATAAATAGACTTTTCTTATCAATGGATGGCT
** **
22540747 TTTTCTTCACGTTTTTCGATGCAAACAA-AAAGTTATGATCTGCTTGAACCAAAAATGGAAAAAA
65 TTCGCTTCACGTTTCCCGATGCAAACAACAAA-TTATGATCTGCTTGAACCAAAAAT-GAAAAAA
* * * * * * *
22540811 ATTCAATTTAAAATCATTTCTAAAGTTATAAATCCACTTAAAGAGAATAACAACGATTTTAAAGG
128 ATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGTGAGTAACAAGGCTTTCAAAGG
* * * *
22540876 CATGAGTGACTATAACTAGACTTTTCTTGTCAAGGGATGATTTTTTTTTTCCACGTTTCCCAATC
193 CATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATG--TTTTTATTT-CACGTTTCCCAATG
* * *
22540941 CAAACATCAAATTATGATCTTTTTTAATCGAAAATGTAAAAAAAAATTC-ATTCAAAATTATTTA
255 CAAACATCAAATTATGATCTATTTTAA-CAAAAATG-AAAAAAAAATTCAATT-AAAATCATTTA
22541005 AAAAGTTCTAAAATCACTTAAAC
317 AAAAGTTCTAAAATCACTTAAAC
* * * * *
22541028 TGAGTAATAAGGGTTTTGAAGGTATGAGTGCCTATAAATAGACTTTTCTTGTCAATGGATGGCTT
1 TGAGTAATAAGGCTTTTAAAGGCATGAGTGACTATAAATAGACTTTTCTTATCAATGGATGGCTT
* * * * ** * *
22541093 TCGCTTCATGTCTCCCGATGCAAACATCAAATTATGATCTGTTTTG-GTCAAAAATGAGAATAAT
66 TCGCTTCACGTTTCCCGATGCAAACAACAAATTATGATCTG-CTTGAACCAAAAATGAAAAAAAT
* * * * * * * * * * ** * *
22541157 TCAATTTTTAAATCATTTATACATTTATAAAACTATTTCAGGGGACTTATTAGGCTTTCGAGGGC
130 TCAA-TTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGTGAGTAACAAGGCTTTCAAAGGC
* * * *
22541222 ATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGTTTTCACTTCATGTTTCCCAATGCAA
194 ATGAGTGACTATAAATAGACTTTTCTTGTCAATGGAT-GTTTTTATTTCACGTTTCCCAATGCAA
* * * * *
22541287 ACAACAAACTATGATCTGTTTTAACCAAAAATG-AAAAAAAATTCAAATTGAAATCATTT-ATAA
258 ACATCAAATTATGATCTATTTTAA-CAAAAATGAAAAAAAAATTC-AATTAAAATCATTTAAAAA
* *
22541350 GATTAC-AAAACCA-TATAAAG
321 G-TT-CTAAAATCACT-TAAAC
* * ** *
22541370 TGAGTAA-ATA-GCTTTTAAAGGCATTAGTGACTACAAATAGACTTTAATTGTCAATGGATGGCT
1 TGAGTAATA-AGGCTTTTAAAGGCATGAGTGACTATAAATAGACTTTTCTTATCAATGGATGGCT
* * * ** * *
22541433 TTTGTTTCATGTTTCTTGATGCAAA-AATCAAATTATGATCTGTTTTAA-CAAAAATGTCAAAAA
65 TTCGCTTCACGTTTCCCGATGCAAACAA-CAAATTATGATCTGCTTGAACCAAAAATG--AAAAA
* * *
22541496 AATTCAATTTAAAATCATTTAAAAAGTTATAAATCCACTTAAAGTGAGTAACAAGGCTATCAAAG
127 AATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGTGAGTAACAAGGCTTTCAAAG
** * * * * **
22541561 GCATGAGCT-ACTATACTTGGACTTTTCTTATCAATGGATGGCTTTTT-CTTCACGTTTTCTGAT
192 GCATGAG-TGACTATAAATAGACTTTTCTTGTCAATGGAT-G-TTTTTATTTCACGTTTCCCAAT
* * ** * *
22541624 GCAAACAACAAGTTATGATCTGCTTTAACCAAAAAT--AAAAAGAATTCAATTTAAAATCACTTA
254 GCAAACATCAAATTATGATCTATTTTAA-CAAAAATGAAAAAAAAATTCAA-TTAAAATCATTTA
*
22541687 TAAAGT
317 AAAAGT
22541693 AATGAGTGCC
Statistics
Matches: 820, Mismatches: 154, Indels: 75
0.78 0.15 0.07
Matches are distributed among these distances:
339 2 0.00
340 33 0.04
341 221 0.27
342 47 0.06
343 171 0.21
344 92 0.11
345 226 0.28
346 27 0.03
347 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.34
Consensus pattern (339 bp):
TGAGTAATAAGGCTTTTAAAGGCATGAGTGACTATAAATAGACTTTTCTTATCAATGGATGGCTT
TCGCTTCACGTTTCCCGATGCAAACAACAAATTATGATCTGCTTGAACCAAAAATGAAAAAAATT
CAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGTGAGTAACAAGGCTTTCAAAGGCAT
GAGTGACTATAAATAGACTTTTCTTGTCAATGGATGTTTTTATTTCACGTTTCCCAATGCAAACA
TCAAATTATGATCTATTTTAACAAAAATGAAAAAAAAATTCAATTAAAATCATTTAAAAAGTTCT
AAAATCACTTAAAC
Found at i:22545287 original size:172 final size:169
Alignment explanation
Indices: 22544926--22545631 Score: 741
Period size: 171 Copynumber: 4.1 Consensus size: 169
22544916 GTCTCACAGC
* * ** * *
22544926 CTATAAATAGACTTTTTC-TGTCAATAGATGGCTTTCACTTTATGTCTTC-CGATGCAAACATCA
1 CTATAAATGGA-TTTTTCTTGTCAATGGATGGCTTTTGCTTCACGT-TTCACGATGCAAACATCA
*
22544989 AATCATGATATGTTTTAACCAAAAATGTAAAAAAAATT-AATTT-AAAATCATTTAAATGGTTAT
64 AATTATGATATGTTTTAACCAAAAATG---AAAAAATTCAATTTGAAAATCATTTAAA-GGTTAT
* *
22545052 AAATCCACTTAAAAGG-TGTAAGAAGGCTTTCGAAGGCATGAGTGA
125 AAATCCACTT-AAAGGAAGTAAGAAGGCTTTTGAAGGCATGAGTGA
* * *
22545097 CTGTAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCATGATGCAAACATCAAA
1 CTATAAATGGATTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCACGATGCAAACATCAAA
** *
22545162 TTATGATATGTTTTAATGAAAAATGTAAAAGTATTCAATTTGAAAATCATTTAAACGGTTATAAA
66 TTATGATATGTTTTAACCAAAAATG-AAAA-AATTCAATTTGAAAATCATTTAAA-GGTTATAAA
** *
22545227 TCCACTTAAAGGGTGTGAGAAGGCTTTTGAAGGCATGAGTGA
128 TCCACTTAAAGGAAGTAAGAAGGCTTTTGAAGGCATGAGTGA
**
22545269 CTATAAACAGATTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCACGATGCAAACATCAAA
1 CTATAAATGGATTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCACGATGCAAACATCAAA
* * * *
22545334 TTATGA-ATCGTTTGAACCAAAAATGAGAATAATTCAATTTTAAAATCATTCAAAAGAG-TATAA
66 TTATGATAT-GTTTTAACCAAAAATGA-AAAAATTCAATTTGAAAATCATT-TAAAG-GTTATAA
** * * ** *
22545397 GA-CCTTTTAAAGTAACTAATTAGGCTTTTGAAGGCATTAGTGA
127 -ATCCACTTAAAGGAAGTAAGAAGGCTTTTGAAGGCATGAGTGA
* * * ** * * *
22545440 CTATAAATGGGTTTTTCTTGTCAATGGATGG-TTTTCGCTTCATGTTCCTTGATGGAAATAACAA
1 CTATAAATGGATTTTTCTTGTCAATGGATGGCTTTT-GCTTCACGTTTCACGATGCAAACATCAA
* * * * *
22545504 ATTATGATATGTTTTAACCAAAAATGAAAAAAATGAATTTG-AAATCATTTATAAGATTGTAAAA
65 ATTATGATATGTTTTAACCAAAAATGAAAAAATTCAATTTGAAAATCATTTA-AAGGTTATAAAT
* * * *
22545568 CCATTTGAAGCAAGTAA-ATAGGCTTTTGAAGTCATGAGTGA
129 CCACTTAAAGGAAGTAAGA-AGGCTTTTGAAGGCATGAGTGA
22545609 CTATAAATGGATTTTTCTTGTCA
1 CTATAAATGGATTTTTCTTGTCA
22545632 CGACTCGAAA
Statistics
Matches: 453, Mismatches: 65, Indels: 36
0.82 0.12 0.06
Matches are distributed among these distances:
168 2 0.00
169 74 0.16
170 25 0.06
171 208 0.46
172 144 0.32
ACGTcount: A:0.36, C:0.12, G:0.17, T:0.35
Consensus pattern (169 bp):
CTATAAATGGATTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCACGATGCAAACATCAAA
TTATGATATGTTTTAACCAAAAATGAAAAAATTCAATTTGAAAATCATTTAAAGGTTATAAATCC
ACTTAAAGGAAGTAAGAAGGCTTTTGAAGGCATGAGTGA
Found at i:22550201 original size:42 final size:42
Alignment explanation
Indices: 22550144--22550311 Score: 185
Period size: 42 Copynumber: 4.0 Consensus size: 42
22550134 GTAATGATAT
* * *
22550144 TGACCCGGCCATGTGCAAGTAGGAGTGCGCATAAGCCGATGC
1 TGACCTGGCTATGTGCGAGTAGGAGTGCGCATAAGCCGATGC
* * * *
22550186 TAACCTGGCTATGTGCGAGTGGGAGTGTGCATAAGCTGATGC
1 TGACCTGGCTATGTGCGAGTAGGAGTGCGCATAAGCCGATGC
* * * * *
22550228 TGA-CTCGGCTATGTGTGAGTGGGAGTGCACATAAGCTGATGT
1 TGACCT-GGCTATGTGCGAGTAGGAGTGCGCATAAGCCGATGC
* *
22550270 TGACCCGGCTATGTGCTAGTAGGGAGTGCGCATAAGCCGATG
1 TGACCTGGCTATGTGCGAGTA-GGAGTGCGCATAAGCCGATG
22550312 ATGATGATGA
Statistics
Matches: 105, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
41 2 0.02
42 84 0.80
43 19 0.18
ACGTcount: A:0.22, C:0.20, G:0.35, T:0.23
Consensus pattern (42 bp):
TGACCTGGCTATGTGCGAGTAGGAGTGCGCATAAGCCGATGC
Found at i:22554523 original size:20 final size:20
Alignment explanation
Indices: 22554494--22554531 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
22554484 GAGAGAAATT
* *
22554494 CAATTTTAAAATCATTTATC
1 CAATTATAAAACCATTTATC
22554514 CAATTATAAAACCATTTA
1 CAATTATAAAACCATTTA
22554532 AAGTGACTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.16, G:0.00, T:0.39
Consensus pattern (20 bp):
CAATTATAAAACCATTTATC
Found at i:22554582 original size:171 final size:169
Alignment explanation
Indices: 22554110--22557994 Score: 3285
Period size: 170 Copynumber: 22.8 Consensus size: 169
22554100 GGCTATCACA
* * * ** *
22554110 CAAACATCAAATTATGATATTTTTTAATCAAAAGTGTATAAAAATTCAATTTAAAATCATTTATA
1 CAAACATCAAATTATGATCTGTTTTAACCAAAAAAG-AAAAAAATTCAATTTAAAATCATTTATA
* * * * *
22554175 AAGTTATAAATCCACTTAAAG-GAGT-AATAAGGCTTTCGAAGGTATGAGTAATTATAAATAGAC
65 AAGTTATAAAACCACTTAAAGTGAGTAAAT-AGGCTTTTGAAGGCATGAGTGACTATAAATAGAC
* * * **
22554238 TTTTCTTATCAATGTATGGCTTTTTCTTCACGTTTTCTAATG
129 TTTTCTTGTCAATGGATGGCTTTTGCTTCACG-TTTCCGATG
* ** *
22554280 CAAACA-AAAAGTTATGATCTACTTTAACCAAAAATAGAAAAAAAAT-AATTTAAAATCATTTAT
1 CAAACATCAAA-TTATGATCTGTTTTAACCAAAAA-AGAAAAAAATTCAATTTAAAATCATTTAT
* * * *
22554343 AAAGTTATAAATCCACTTAAGAGT--GTAAGA-AGGCTTTCGAAGGCATAAGTGACTATAAATGG
64 AAAGTTATAAAACCACTTAA-AGTGAGTAA-ATAGGCTTTTGAAGGCATGAGTGACTATAAATAG
* *
22554405 ACTTTTCTTGTCAATGGATGGCTTGTGCTTCACATTTCGCGATG
127 ACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTC-CGATG
* * * *
22554449 CAAACATCGAATTATGATCTGTTTTAATCAAAAAAGAGAGAAATTCAATTTTAAAATCATTTATC
1 CAAACATCAAATTATGATCTGTTTTAACCAAAAAAGAAAAAAATTCAA-TTTAAAATCATTTAT-
* * * * * *
22554514 CAA-TTATAAAACCATTTAAAGTGACTAATTAGGCTTTCGAGGGCATGAGTGACTATAAATAGAC
64 AAAGTTATAAAACCACTTAAAGTGAGTAAATAGGCTTTTGAAGGCATGAGTGACTATAAATAGAC
*
22554578 TTTTCTTGTCAATGGAT-GATTTTCGCTTCACG-TTCCTGATG
129 TTTTCTTGTCAATGGATGGCTTTT-GCTTCACGTTTCC-GATG
* * * * * *
22554619 CAAGCAACAAACTATAATCT-TTTTCAA-CAAAAAATGAAAAAAATTCAAATTGAAATCATTTAT
1 CAAACATCAAATTATGATCTGTTTT-AACCAAAAAA-GAAAAAAATTCAATTTAAAATCATTTAT
* * *
22554682 AAGGTTATAAAACCA-TATGAAGTGAGTAAATAGGCTTTTGAGGGCATGAGTGACTATAAATAGA
64 AAAGTTATAAAACCACT-TAAAGTGAGTAAATAGGCTTTTGAAGGCATGAGTGACTATAAATAGA
* * *
22554746 CTTTTCTGGTCAATGGATGGTTTTTGCTTCACG-TTCCTAATG
128 CTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCC-GATG
* * * * * * *
22554788 CAAACAACAAACTACGATCTCTTTTAACCAAAAATGAAAAAGAATTCAAATTGAAATCATTTAT-
1 CAAACATCAAATTATGATCTGTTTTAACCAAAAAAGAAAAA-AATTCAATTTAAAATCATTTATA
* * * *
22554852 AAGATTATAAAACCA-TCTGAAGTGAGTAAATAAGCTTTTAAAGGCATTAGTGACTATAAATAGA
65 AAG-TTATAAAACCACT-TAAAGTGAGTAAATAGGCTTTTGAAGGCATGAGTGACTATAAATAGA
** * * * *
22554916 CTTTTCTCATCAGTGGATGGCTTTTGTTTCACATTTCTCCATG
128 CTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTC-CGATG
* * * * * *
22554959 TAAACATCAAATTACGATATGTTTTAATCAAAACCATAAAAAAATTCAATTTAAAATCA-TTATA
1 CAAACATCAAATTATGATCTGTTTTAACCAAAA-AAGAAAAAAATTCAATTTAAAATCATTTATA
* * * *
22555023 AAGTTCTAAAACCACTTAAAGCGAGT-AATAAGGCTTTTGAAGGTATGAGTGCCTATAAATAGAC
65 AAGTTATAAAACCACTTAAAGTGAGTAAAT-AGGCTTTTGAAGGCATGAGTGACTATAAATAGAC
* * * *
22555087 TTGTCTTGTCAATGGATGGCTTTTGCTTTATGTCTTCCAATG
129 TTTTCTTGTCAATGGATGGCTTTTGCTTCACGT-TTCCGATG
* *
22555129 CAAACATAAAATTATGATCTGTTTTAACTAAAAATA-AAAAAAATT-AATTTAAAATCATTTA-A
1 CAAACATCAAATTATGATCTGTTTTAACCAAAAA-AGAAAAAAATTCAATTTAAAATCATTTATA
* * * * * * * *
22555191 AAGGTTATAAATCCACTTAAA-TGGTGTAAGA-AGTCTTTCGAAGGTATGAATGACTATAAGTGG
65 AA-GTTATAAAACCACTTAAAGT-GAGTAA-ATAGGCTTTTGAAGGCATGAGTGACTATAAATAG
* *
22555254 ACTTTTCTTGTCAATAGATGGCTTTTGCTTCACATTTCACGATG
127 ACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTC-CGATG
* * * * *
22555298 CAAATATCGAATTATGATCTATTTTAATCAAAAAAGAGAAAAATTCAATTTTAAAATCATTTAT-
1 CAAACATCAAATTATGATCTGTTTTAACCAAAAAAGAAAAAAATTCAA-TTTAAAATCATTTATA
* * * * * *
22555362 ACGATTATAAAACCATTTAAATTGACTAACTAGGCTTTTGAGGGCATGAGTGACTATAAATAGAC
65 AAG-TTATAAAACCACTTAAAGTGAGTAAATAGGCTTTTGAAGGCATGAGTGACTATAAATAGAC
* * * *
22555427 -TTTCATGTCAATGGATGGTTTTTGCTTCATGTTTCCTAATG
129 TTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCC-GATG
* * * * *
22555468 CAAACAACAAACTATGATCTCTTTTAACCAAAAATGAAAAAAATTC-ATATTCAAATCATTTATA
1 CAAACATCAAATTATGATCTGTTTTAACCAAAAAAGAAAAAAATTCAAT-TTAAAATCATTTATA
* * * *
22555532 AGGTTATGAAACCA-TATAAAGTGAATAAATAGGC-TTTGAAGGCTTGAGTGACTATAAATAGAC
65 AAGTTATAAAACCACT-TAAAGTGAGTAAATAGGCTTTTGAAGGCATGAGTGACTATAAATAGAC
* * * *
22555595 TTTTCTTATCAATGGATGG-TTTTCGCTCCATGTTTCCCAATG
129 TTTTCTTGTCAATGGATGGCTTTT-GCTTCACGTTT-CCGATG
* * * * * * * *
22555637 TAAAAGAT-AAACTATGACCTCTTTTAACCAAAAATGAAAAAGAATTCAAATTGAAATCATTTAT
1 -CAAACATCAAATTATGATCTGTTTTAACCAAAAAAGAAAAA-AATTCAATTTAAAATCATTTAT
* * *
22555701 -AAGATTATAAAACCA-TCTGAAGTGAGTAAATAGGCTTTTGAAGGTATTAGTGACTATAAATAG
64 AAAG-TTATAAAACCACT-TAAAGTGAGTAAATAGGCTTTTGAAGGCATGAGTGACTATAAATAG
** * * **
22555764 ACTTTTCTCATCAATGGATGGCTTTTTCTTCATGTTTCTTAATG
127 ACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTC-CGATG
* * * *
22555808 CAAACATCAAATTATGATATGTTTTAACCAAAACCATAAAAGAAATTCAATTTAAAATCATTTAA
1 CAAACATCAAATTATGATCTGTTTTAACCAAAA-AAGAAAA-AAATTCAATTTAAAATCATTTAT
* ** * * *
22555873 AAAGTTATAAATCTGCTTAAAGTGAGTAACA-AGGTTTTTGAAGGCATGAGTTACTATACCA-AG
64 AAAGTTATAAAACCACTTAAAGTGAGTAA-ATAGGCTTTTGAAGGCATGAGTGACTATA-AATAG
* * * * * *
22555936 ACTTTTCTTGTCAATAGATAGCTTTTTCTACATGTTTTCCAATG
127 ACTTTTCTTGTCAATGGATGGCTTTTGCTTCACG-TTTCCGATG
* * *
22555980 CAAGCA-AAAAGTTATGATCTGCTTTAA-CAAAAAATGGAAAAAAATTTCAATTTAAAATCATTT
1 CAAACATCAAA-TTATGATCTGTTTTAACCAAAAAA--GAAAAAAA-TTCAATTTAAAATCATTT
* * * ** * * *
22556043 ATAAAGTTATAAATCCACTTAAAGAGAATAACA-AGAATTTTGGAGGCATTAGTGACTATAACTA
62 ATAAAGTTATAAAACCACTTAAAGTGAGTAA-ATAGGCTTTTGAAGGCATGAGTGACTATAAATA
* * * * *
22556107 GACTTTTCTTGCCAATGGATGGCATTCT-CTTTATGTTTCCCAATG
126 GACTTTTCTTGTCAATGGATGGC-TTTTGCTTCACGTTT-CCGATG
* * * * *
22556152 CAAACATCAAACTATGATCTTTTTTAACCAAAAATGGAAAAAAATTTAATTCAAAATCATTTA-A
1 CAAACATCAAATTATGATCTGTTTTAACCAAAAA-AGAAAAAAATTCAATTTAAAATCATTTATA
* * * * * ** * *
22556216 AATTTCTAAAACCACTTAAAGCGAGT-GATAGGCTTTTAAAGGTTTGAGTGCCTATAAATAGGCT
65 AAGTTATAAAACCACTTAAAGTGAGTAAATAGGCTTTTGAAGGCATGAGTGACTATAAATAGACT
* * * * *
22556280 TTTCTTGACAATGGATGCCTTTTGTTTCATGTCTCCTGATG
130 TTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCC-GATG
* *
22556321 CAAACATCAAATTATGATTTGCTTTAA-CAAAAAATGTAAAAAAAATT-AATTTAAAATCATTTG
1 CAAACATCAAATTATGATCTGTTTTAACCAAAAAA-G--AAAAAAATTCAATTTAAAATCATTT-
* * * * *
22556384 A-AAATTTATAAATCCACTTAAAGGGAGTAAAAAGGCTTTCGAAGGCATGAGTG-CGTATAAAT-
62 ATAAAGTTATAAAACCACTTAAAGTGAGTAAATAGGCTTTTGAAGGCATGAGTGAC-TATAAATA
* *
22556446 GAACTTTTCTTGTCAATGGATGGCTTTTGCTTTATGTTTCACGATG
126 G-ACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTC-CGATG
* * ** *
22556492 CAAACATCGAATTATGATCTGTTTTAATCAAAAAAG-GGAAAATTTAATTTTAAAATCATTTAT-
1 CAAACATCAAATTATGATCTGTTTTAACCAAAAAAGAAAAAAATTCAA-TTTAAAATCATTTATA
* * * * * * * * * *
22556555 ACGATTATAAAATCATTTAAAGCGACTAACTAGGCTTTCGAGGGCATGAGTGACTATAAATGGAT
65 AAG-TTATAAAACCACTTAAAGTGAGTAAATAGGCTTTTGAAGGCATGAGTGACTATAAATAGAC
*
22556620 TTTTCTTGTCAATGGATGG-TTGTTGCTTCACGTTTCTCCATG
129 TTTTCTTGTCAATGGATGGCTT-TTGCTTCACGTTTC-CGATG
* * * * * *
22556662 CAAACAACAAAATATGATATGTTTTAACCAAAAATGAAAAAAATTCAAATTGAAATCATTTAT-A
1 CAAACATCAAATTATGATCTGTTTTAACCAAAAAAGAAAAAAATTCAATTTAAAATCATTTATAA
* * **
22556726 AGATTATAAAAGCATCTGAATA-T-AGTAAATACACTTTTGAAGGCATGAGTGACTATAAATAGA
66 AG-TTATAAAACCA-CTTAA-AGTGAGTAAATAGGCTTTTGAAGGCATGAGTGACTATAAATAGA
* * * * *
22556789 ATTTTCTTGTCAATGTATAGCTTTTTCTTCATGTTTCCCGATG
128 CTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTT-CCGATG
* * * * * *
22556832 CAAACATCAAATTACGATTTGTTTT-ACCCAAAAAGAGAATAATTCAATTTTAAAATCGTTTAT-
1 CAAACATCAAATTATGATCTGTTTTAACCAAAAAAGAAAAAAATTCAA-TTTAAAATCATTTATA
* * * * * * * * *
22556895 ACGACTATAAAACTATTTAAAGCGACTAACTATGCTTTTGAAGGCATGAGTGACTATAAATGGAC
65 AAG-TTATAAAACCACTTAAAGTGAGTAAATAGGCTTTTGAAGGCATGAGTGACTATAAATAGAC
* * *
22556960 TTTTCTTGTCAATGGATGGTTTTTGCTTCACGTTACGTGATG
129 TTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTC-CGATG
* * ** * * * *
22557002 CAAACAACAAACTATGATCTGTTTTAACCAAAAATTAAAAAATATTAAAATTGAAATCACTTAT-
1 CAAACATCAAATTATGATCTGTTTTAACCAAAAAAGAAAAAA-ATTCAATTTAAAATCATTTATA
* * * ** * * *
22557066 TAGATTGTAAAACTA-TCTAAAGCAAGTAAATAGGCTTTTAAAGGTATTAGTGACTATAAATAGA
65 AAG-TTATAAAACCACT-TAAAGTGAGTAAATAGGCTTTTGAAGGCATGAGTGACTATAAATAGA
* * ** * *
22557130 CTTTTTTTTGTCAACGGATGGCTTTTTATTTTCACTTTTCTTGATG
128 C-TTTTCTTGTCAATGGATGGC-TTTT-GCTTCACGTTTC-CGATG
* * * *
22557176 CGAACATCAAATTATGATATGTTTTAACTATAAAAGTAAAAGAAATTCAATTTAAAATCATTTCA
1 CAAACATCAAATTATGATCTGTTTTAACCAAAAAAG-AAAA-AAATTCAATTTAAAATCATTT-A
* * * **
22557241 -AAA-TTGATAAATCCACTTAAAGTGAGTAACA-AGACTTTCGAAGGCATGAGTTTCTATAACA-
63 TAAAGTT-ATAAAACCACTTAAAGTGAGTAA-ATAGGCTTTTGAAGGCATGAGTGACTATAA-AT
* * * * * *
22557302 GGACTTTTCTCGTCAATGGATAGCTTTTTCTTCATGTTTTCTGATG
125 AGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACG-TTTCCGATG
* * * * * * **
22557348 TAAACAACAAGTTATGATATGCTTTAACCAAAAATGAAATAAAATTCAATTTAAAAAGATTTATA
1 CAAACATCAAATTATGATCTGTTTTAACCAAAAAAGAAA-AAAATTCAATTTAAAATCATTTATA
* * * * *
22557413 AAGTTATAAATCCACTTAAAGAGAATAACA-AGGCTTTTGAAGGCAGGAGTGACTATAACTAGAC
65 AAGTTATAAAACCACTTAAAGTGAGTAA-ATAGGCTTTTGAAGGCATGAGTGACTATAAATAGAC
* *
22557477 TTTTCTTGTCAATTGATGGCTTTTTCTTCACGTTTCCCGATG
129 TTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTT-CCGATG
* * * * * * * *
22557519 CACACATCAAATTATGATAT-TTCTTCACTAAAAATGTAAAAAAAAATAAATTCAAAATCATTTA
1 CAAACATCAAATTATGATCTGTT-TTAACCAAAAAAG--AAAAAAATTCAATTTAAAATCATTTA
* * * * * * *
22557583 AAAAGTTCTAAAACCACTTAAAGCGATTAACA-A-GCTTTTTGAAGGAATGAGTGCCCATAAATA
63 TAAAGTTATAAAACCACTTAAAGTGAGTAA-ATAGGC-TTTTGAAGGCATGAGTGACTATAAATA
* * * * *
22557646 GACTTTTCTTGCCGATGGATGCCTTTTGCTTCACGTCTCTCAATG
126 GACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTC-CGATG
* * * *
22557691 CAAACATCAAATTATGATCTGTTTTAACCAAAAATGACAAGAAATTCAATCTGAAATCATTTATA
1 CAAACATCAAATTATGATCTGTTTTAACCAAAAAAGA-AAAAAATTCAATTTAAAATCATTTATA
* * * * * *
22557756 AAGTTCTAAAACCACTTAAAGCGAGTAACA-AGGCTCTCGAAGGTATGAGTGACAATAAATAGAC
65 AAGTTATAAAACCACTTAAAGTGAGTAA-ATAGGCTTTTGAAGGCATGAGTGACTATAAATAGAC
* * *
22557820 TTTTCTTATCAATGGAAGG-TTTTCGCTTCACGTTTCTTGATG
129 TTTTCTTGTCAATGGATGGCTTTT-GCTTCACGTTTC-CGATG
* * * * * *
22557862 CAAATAACAAATTCTAATCTATTTTAACCAAAAAAGAAAAAAAATTCAAATTAAAATCATTTAT-
1 CAAACATCAAATTATGATCTGTTTTAACCAAAAAAG-AAAAAAATTCAATTTAAAATCATTTATA
* * * * ** * * *
22557926 AAGATTATAAAATCATTTGAAGCGAGTAAATAGGCTTTCCAAGCCATTAGTGACTATAAATGGAC
65 AAG-TTATAAAACCACTTAAAGTGAGTAAATAGGCTTTTGAAGGCATGAGTGACTATAAATAGAC
22557991 TTTT
129 TTTT
22557995 TATTGTTAGA
Statistics
Matches: 3039, Mismatches: 538, Indels: 275
0.79 0.14 0.07
Matches are distributed among these distances:
168 86 0.03
169 622 0.20
170 889 0.29
171 809 0.27
172 468 0.15
173 40 0.01
174 59 0.02
175 59 0.02
176 7 0.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (169 bp):
CAAACATCAAATTATGATCTGTTTTAACCAAAAAAGAAAAAAATTCAATTTAAAATCATTTATAA
AGTTATAAAACCACTTAAAGTGAGTAAATAGGCTTTTGAAGGCATGAGTGACTATAAATAGACTT
TTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCGATG
Found at i:22558224 original size:242 final size:241
Alignment explanation
Indices: 22557767--22558228 Score: 548
Period size: 242 Copynumber: 1.9 Consensus size: 241
22557757 AGTTCTAAAA
* * *
22557767 CCACTTAAAGCGAGTAACAAGGCTCTCGAAGGTATGAGTGACAATAAATAGACTTTTCTTATCAA
1 CCACTTAAAGCGAGTAACAAGGCTCTCGAAGGCATCAATGACAATAAATAGACTTTTCTTATCAA
* * *** * *
22557832 TGGAAGGTTTTCGCTTCACGTTTCTTGATGCAAATAACAAATTCTAATCTATTTTAACCAAAAAA
66 TGGAAGGTTTTCGCTTAACATTTCCCAATGCAAACAACAAATTATAATCTATTTTAACCAAAAAA
* * * * *
22557897 GAAAAAAAATTCAAATTAAAATCATTTATAAGATTATAAAATCATTTGAAGCGAGTAAATAGGCT
131 GAAAAAAAATTCAAATTAAAATCATTCATAAGATTACAAAACCATTTAAAGCGACTAAATAGGCT
*
22557962 TTCCAAGCCATTAGTGACTATAAATGGACTTTTTATTGTTAGAAAT
196 TTCCAAGCCATGAGTGACTATAAATGGACTTTTTATTGTTAGAAAT
* * * * ** *
22558008 CCACTTAAAGTGAGTAAGAAGGCTTTCGAAGGCATCAATGGCTGTAAATAGACTTTTCTTGTCAA
1 CCACTTAAAGCGAGTAACAAGGCTCTCGAAGGCATCAATGACAATAAATAGACTTTTCTTATCAA
* *** * * *
22558073 TGGATGGCTTTTTTTTTAACATTTCCCAATGCAAACATCAAATTATGATCTGTTTTAACCAAAAA
66 TGGAAGG-TTTTCGCTTAACATTTCCCAATGCAAACAACAAATTATAATCTATTTTAACCAAAAA
* * **
22558138 AG-AGAAAAATTCAATTTTAAAATCATTCATACTATTACAAAACCATTTAAAGCGACTAAATAGG
130 AGAAAAAAAATTCAA-ATTAAAATCATTCATAAGATTACAAAACCATTTAAAGCGACTAAATAGG
** * * *
22558202 CTTTTGAGGGCATGATTGACTATAAAT
194 CTTTCCAAGCCATGAGTGACTATAAAT
22558229 AAATTTTTCT
Statistics
Matches: 180, Mismatches: 39, Indels: 3
0.81 0.18 0.01
Matches are distributed among these distances:
241 72 0.40
242 108 0.60
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (241 bp):
CCACTTAAAGCGAGTAACAAGGCTCTCGAAGGCATCAATGACAATAAATAGACTTTTCTTATCAA
TGGAAGGTTTTCGCTTAACATTTCCCAATGCAAACAACAAATTATAATCTATTTTAACCAAAAAA
GAAAAAAAATTCAAATTAAAATCATTCATAAGATTACAAAACCATTTAAAGCGACTAAATAGGCT
TTCCAAGCCATGAGTGACTATAAATGGACTTTTTATTGTTAGAAAT
Found at i:22558321 original size:172 final size:173
Alignment explanation
Indices: 22558008--22559537 Score: 1373
Period size: 172 Copynumber: 8.9 Consensus size: 173
22557998 TGTTAGAAAT
** * * * * *
22558008 CCACTTAAAGTGAGTAAGAAGGCTTTCGAAGGCATCAATGGCTGTAAATAGACTTTTCTTGTCAA
1 CCACTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAA
* * * * * *
22558073 TGGATGGCTTTTTTTTTAACATTTCCCAATGCAAACATCAAATTATGATCTGTTTTAACC-AAAA
66 TGGATGGC-TTTTTCTTCACGTTTCTCGATGCAAACATCAAATTATGATCTATTTTAACCAAAAA
* * **
22558137 --AAGAGAAAAATTCAATTTTAAAATCATTCATACTA-TTACAAAA
130 TTAAAAG-AAAATTCAA-TTTAAAATCATTTATAAAACTTACAAAA
* * * * * * * *
22558180 CCATTTAAAGCGACTAA-ATAGGCTTTTGAGGGCATGATTGACTATAAATAAATTTTTCTTGTCA
1 CCACTTAAAGCAAGTAACA-AGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCA
* * *
22558244 ATGGATGG-TTTTCACTTCACGTTTTTCGATGCAAACAAT-AAACTATGATCTATTTTAACCAAA
65 ATGGATGGCTTTT-TCTTCACGTTTCTCGATGCAAAC-ATCAAATTATGATCTATTTTAACCAAA
* * * * *
22558307 AA-CAAAAGAAAATTCAAATCAAAATCATTTATAAGA-TTATAAAA
128 AATTAAAAGAAAATTCAATTTAAAATCATTTATAAAACTTACAAAA
* * * * * * *
22558351 CCA-TATTAAGCAAG-AAAATAGGCTTTTGTAGGCATTAGTGATTATAAATAGACATTTCTTGTC
1 CCACT-TAAAGCAAGTAACA-AGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTC
* * * * * * *
22558414 AATAGATGGCTTTTGT-TTCATGTTTCCCCATGCAAACATCAAATTATGATATGTTTTAACCATA
64 AATGGATGGCTTTT-TCTTCACGTTTCTCGATGCAAACATCAAATTATGATCTATTTTAACCAAA
* *
22558478 AATGTAAAAG-AAATTCAATTTAAAATCATTTA-AAAACTTAGAAAT
128 AAT-TAAAAGAAAATTCAATTTAAAATCATTTATAAAACTTACAAAA
* * * ** *
22558523 CCATTTAAAGCAAGTAGCAAGGCTTTCGAAGGCATGAGTTACTATACCTAGACTTTTCTTATCAA
1 CCACTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAA
* * * * * * *
22558588 TGGATGGATTTTTCTTCATGTTTTTCAATGCAAACAACAAGTTATGATCTACTTTAACCAAAAAT
66 TGGATGGCTTTTTCTTCACGTTTCTCGATGCAAACATCAAATTATGATCTATTTTAACCAAAAAT
* * * * *
22558653 GAAAA-AAAATTCAATTTAAAGTCATTTAT-AAAGTTATAAAT
131 TAAAAGAAAATTCAATTTAAAATCATTTATAAAACTTACAAAA
* * * * * *
22558694 CCACTTAAAG-AGAATAACAAGGCTTTCGAAGGCATGAGTAACTATAATTGGACGTTCCTTGTCA
1 CCACTTAAAGCA-AGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCA
* * * * *
22558758 ATGGATGGTTTTTTCCTCACGTTTCT-GATGCAAACACCAAATTATGATCTTTTTTAACCGAAAA
65 ATGGATGGCTTTTTCTTCACGTTTCTCGATGCAAACATCAAATTATGATCTATTTTAACCAAAAA
* * * * * *
22558822 TGTAAGA-AAAATTTAAATCAAAATCATTTAAAAAAATT-CTAAAA
130 T-TAAAAGAAAATTCAATTTAAAATCATTTATAAAACTTAC-AAAA
* * * * * * *
22558866 CCACTTAAAGCAAGTAATAAGCCTTTTGAAGGTATAAGTGCCTATAAATAGACTTTTTTTGTCAA
1 CCACTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAA
** * * * * *
22558931 TGGATGGCTTTCACTTCATGTTTCCCAATGCAAACATCAGATTATGATCTATTTTAATCAAAAAT
66 TGGATGGCTTTTTCTTCACGTTTCTCGATGCAAACATCAAATTATGATCTATTTTAACCAAAAAT
* *
22558996 GTAAAAG-AAATTCAATTTAAAATCATTTA-AAAACTTAGAAAT
131 -TAAAAGAAAATTCAATTTAAAATCATTTATAAAACTTACAAAA
* ** *
22559038 CCACTTAAAG-AGAGTAACAAGGCTTTCGAAGGCATGAGTTACTATACCTAGACTTTTCTTATCA
1 CCACTTAAAGCA-AGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCA
* * * * * *
22559102 ATGGATGGCTTTTTCTTTATGTTTTTCGATGCAAACAACAAGTTATGACCTGA-TTTAACCAAAA
65 ATGGATGGCTTTTTCTTCACGTTTCTCGATGCAAACATCAAATTATGATCT-ATTTTAACCAAAA
* * ** * *
22559166 ATGAAAA-AAAA-TCAATTTAAAATAATTTAT-AATGTTATAAAT
129 ATTAAAAGAAAATTCAATTTAAAATCATTTATAAAACTTACAAAA
* * * *
22559208 CCACTTAAAGAAAATAACAAGGCTTTCGAAGGCATGAGTGACTAT-AATCGGACTTTTCTTGTTA
1 CCACTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAAT-AGACTTTTCTTGTCA
* *
22559272 ATGGATGGCTTTTTCTTCACGTTTCTCAATGCAAACATCAAATTATGATCTTTTTTAACCAAAAA
65 ATGGATGGCTTTTTCTTCACGTTTCTCGATGCAAACATCAAATTATGATCTATTTTAACCAAAAA
* * *
22559337 TGTAAAAGAAAATTTAATTCAAAATCATTTA-AAAAGTT-CTAAAA
130 T-TAAAAGAAAATTCAATTTAAAATCATTTATAAAACTTAC-AAAA
** ** * * *
22559381 CCACTTAAAGTGAGTAACAAGGCTTTTAAAGGTATGAGTGCCTATAAATAAACTTTTCTTGTCAA
1 CCACTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAA
* ** * * * * *
22559446 TGGATGTCTTTCGCTTGACGTCTC-CTGATGAAAACATCAAATTATGATTTGTTTTAACCAAAAA
66 TGGATGGCTTTTTCTTCACGTTTCTC-GATGCAAACATCAAATTATGATCTATTTTAACCAAAAA
22559510 TGT-AAA-AAAATT-AATTTAAAATCATTTA
130 T-TAAAAGAAAATTCAATTTAAAATCATTTA
22559538 AATATTTATT
Statistics
Matches: 1106, Mismatches: 213, Indels: 80
0.79 0.15 0.06
Matches are distributed among these distances:
169 1 0.00
170 194 0.18
171 305 0.28
172 402 0.36
173 201 0.18
174 3 0.00
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.34
Consensus pattern (173 bp):
CCACTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAA
TGGATGGCTTTTTCTTCACGTTTCTCGATGCAAACATCAAATTATGATCTATTTTAACCAAAAAT
TAAAAGAAAATTCAATTTAAAATCATTTATAAAACTTACAAAA
Found at i:22558664 original size:343 final size:342
Alignment explanation
Indices: 22557999--22559539 Score: 1550
Period size: 343 Copynumber: 4.5 Consensus size: 342
22557989 ACTTTTTATT
* * * * * * * *
22557999 GTTAGAAATCCACTTAAAGTGAGTAAGAAGGCTTTCGAAGGCATCAATGGCTGTAAATAGACTTT
1 GTTATAAAACCACTTAAAGAGAGTAAAAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTT
* * *
22558064 TCTTGTCAATGGATGGCTTTTTTTTTAACATTTCCCAATGCAAACATCAAATTATGATCTGTTTT
66 TCTTGTCAATGGATGGC--TTTTTTTCACGTTTCCCGATGCAAACATCAAATTATGATCTGTTTT
* * * ** * * *
22558129 AACCAAAAAAG-AGAAAAATTCAATTTTAAAATCATTCATACTATTACAAAACCATTTAAAGCGA
129 AACCAAAAATGTAAAAAAATTCAA-TTTAAAATCATTTA-AAAATTATAAAACCACTTAAAGCAA
* * * * * *
22558193 CTAA-ATAGGCTTTTGAGGGCATGATTGACTATAAATAAATTTTTCTTGTCAATGGATGG-TTTT
192 GTAACA-AGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTT
* * * * *
22558256 CACTTCACGTTTTTCGATGCAAACAATAAACTATGATCTATTTTAACCAAAAA--CAAAAGAAAA
256 -ACTTCACGTTTCTCAATGCAAACAACAAATTATGATCTATTTTAACCAAAAATGTAAAAGAAAA
* *
22558319 TTCAAATCAAAATCATTT-ATAA
320 TTCAATTCAAAATCATTTAAAAA
* * * * *
22558341 GATTATAAAACCA-TATTAAGCA-AG-AAAATAGGCTTTTGTAGGCATTAGTGATTATAAATAGA
1 G-TTATAAAACCACT-TAAAG-AGAGTAAAA-AGGCTTTCGAAGGCATGAGTGACTATAAATAGA
* * * * *
22558403 CATTTCTTGTCAATAGATGGCTTTTGTTTCATGTTTCCCCATGCAAACATCAAATTATGATATGT
62 CTTTTCTTGTCAATGGATGGCTTTT-TTTCACGTTTCCCGATGCAAACATCAAATTATGATCTGT
* * * *
22558468 TTTAACCATAAATGTAAAAGAAATTCAATTTAAAATCATTTAAAAACTTAGAAATCCATTTAAAG
126 TTTAACCAAAAATGTAAAA-AAATTCAATTTAAAATCATTTAAAAA-TTATAAAACCACTTAAAG
* * ** * *
22558533 CAAGTAGCAAGGCTTTCGAAGGCATGAGTTACTATACCTAGACTTTTCTTATCAATGGATGGATT
189 CAAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTT
* * * * *
22558598 TTTCTTCATGTTTTTCAATGCAAACAACAAGTTATGATCTACTTTAACCAAAAATG-AAAA-AAA
254 TTACTTCACGTTTCTCAATGCAAACAACAAATTATGATCTATTTTAACCAAAAATGTAAAAGAAA
* * *
22558661 ATTCAATTTAAAGTCATTTATAAA
319 ATTCAATTCAAAATCATTTAAAAA
* * * * * * *
22558685 GTTATAAATCCACTTAAAGAGAATAACAAGGCTTTCGAAGGCATGAGTAACTATAATTGGACGTT
1 GTTATAAAACCACTTAAAGAGAGTAAAAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTT
* * * *
22558750 CCTTGTCAATGGATGG-TTTTTTCCTCACGTTT-CTGATGCAAACACCAAATTATGATCTTTTTT
66 TCTTGTCAATGGATGGCTTTTTT--TCACGTTTCCCGATGCAAACATCAAATTATGATCTGTTTT
* * * * *
22558813 AACCGAAAATGTAAGAAAAATTTAAATCAAAATCATTTAAAAAAATTCTAAAACCACTTAAAGCA
129 AACCAAAAATGTAA-AAAAATTCAATTTAAAATCATTT--AAAAATTATAAAACCACTTAAAGCA
* * * * * * * *
22558878 AGTAATAAGCCTTTTGAAGGTATAAGTGCCTATAAATAGACTTTTTTTGTCAATGGATGGCTTTC
191 AGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTT
* * * * *
22558943 ACTTCATGTTTCCCAATGCAAACATCAGATTATGATCTATTTTAATCAAAAATGTAAAAG-AAAT
256 ACTTCACGTTTCTCAATGCAAACAACAAATTATGATCTATTTTAACCAAAAATGTAAAAGAAAAT
*
22559007 TCAATTTAAAATCATTTAAAAA
321 TCAATTCAAAATCATTTAAAAA
* * * * * **
22559029 CTTAGAAATCCACTTAAAGAGAGTAACAAGGCTTTCGAAGGCATGAGTTACTATACCTAGACTTT
1 GTTATAAAACCACTTAAAGAGAGTAAAAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTT
* * * ** * * * *
22559094 TCTTATCAATGGATGGCTTTTTCTTTATGTTTTTCGATGCAAACAACAAGTTATGACCTGATTTA
66 TCTTGTCAATGGATGGCTTTTT-TTCACGTTTCCCGATGCAAACATCAAATTATGATCTGTTTTA
* * ** * * *
22559159 ACCAAAAATG-AAAAAAAATCAATTTAAAATAATTTATAATGTTATAAATCCACTTAAAGAAAAT
130 ACCAAAAATGTAAAAAAATTCAATTTAAAATCATTTA-AAAATTATAAAACCACTTAAAGCAAGT
* * *
22559223 AACAAGGCTTTCGAAGGCATGAGTGACTAT-AATCGGACTTTTCTTGTTAATGGATGGCTTTTTC
194 AACAAGGCTTTCGAAGGCATGAGTGACTATAAAT-AGACTTTTCTTGTCAATGGATGGCTTTTAC
* * *
22559287 TTCACGTTTCTCAATGCAAACATCAAATTATGATCTTTTTTAACCAAAAATGTAAAAGAAAATTT
258 TTCACGTTTCTCAATGCAAACAACAAATTATGATCTATTTTAACCAAAAATGTAAAAGAAAATTC
22559352 AATTCAAAATCATTTAAAAA
323 AATTCAAAATCATTTAAAAA
* * * ** * * *
22559372 GTTCTAAAACCACTTAAAGTGAGTAACAAGGCTTTTAAAGGTATGAGTGCCTATAAATAAACTTT
1 GTTATAAAACCACTTAAAGAGAGTAAAAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTT
* ** * * * * *
22559437 TCTTGTCAATGGATGTCTTTCGCTTGACGTCTCCTGATGAAAACATCAAATTATGATTTGTTTTA
66 TCTTGTCAATGGATGGCTTT-TTTTCACGTTTCCCGATGCAAACATCAAATTATGATCTGTTTTA
22559502 ACCAAAAATGTAAAAAAATT-AATTTAAAATCATTTAAA
130 ACCAAAAATGTAAAAAAATTCAATTTAAAATCATTTAAA
22559540 TATTTATTGT
Statistics
Matches: 984, Mismatches: 184, Indels: 62
0.80 0.15 0.05
Matches are distributed among these distances:
341 10 0.01
342 239 0.24
343 551 0.56
344 144 0.15
345 39 0.04
346 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.34
Consensus pattern (342 bp):
GTTATAAAACCACTTAAAGAGAGTAAAAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTT
TCTTGTCAATGGATGGCTTTTTTTCACGTTTCCCGATGCAAACATCAAATTATGATCTGTTTTAA
CCAAAAATGTAAAAAAATTCAATTTAAAATCATTTAAAAATTATAAAACCACTTAAAGCAAGTAA
CAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTACTTC
ACGTTTCTCAATGCAAACAACAAATTATGATCTATTTTAACCAAAAATGTAAAAGAAAATTCAAT
TCAAAATCATTTAAAAA
Found at i:22558977 original size:515 final size:513
Alignment explanation
Indices: 22558000--22559539 Score: 1914
Period size: 515 Copynumber: 3.0 Consensus size: 513
22557990 CTTTTTATTG
* * * ** * **
22558000 TTAGAAATCCACTTAAAGTGAGTAAG-AAGGCTTTCGAAGGCATCAATGGCTGTAAATAGACTTT
1 TTAGAAATCCACTTAAAG-AAGT-AGCAAGGCTTTCGAAGGCATGAGTTACTATACCTAGACTTT
* * * ** ** * * *
22558064 TCTTGTCAATGGATGGCTTTTTTTTTAACATTTCCCAATGCAAACATCAAATTATGATCTGTTTT
64 TCTTATCAATGGATGG-ATTTTTCTTAATGTTTTTCAATGCAAACAACAAGTTATGATCT-ATTT
* * * * * * * *
22558129 AACCAAAAAAG-AGAAAAATTCAATTTTAAAATCATTCATACTA-TTACAAAACCATTTAAAGCG
127 AACCAAAAATGAAAAAAAATTCAA-TTTAAAATCATTTATA-AAGTTATAAATCCACTTAAAGAG
* * * * * ** *
22558192 ACTAA-ATAGGCTTTTGAGGGCATGATTGACTATAAATAAATTTTTCTTGTCAATGGATGGTTTT
190 AATAACA-AGGCTTTCGAAGGCATGAGTGACTATAATTGGACTTTTCTTGTCAATGGATGGTTTT
** * * * * ***
22558256 CACTTCACGTTTTTCGATGCAAACAATAAACTATGATCTATTTTAACCAAAAACAAAAG-AAAAT
254 TTCTTCACGTTTCTCGATGCAAACAACAAATTATGATCTTTTTTAACCAAAAATGTAAGAAAAAT
* * * * * *
22558320 TCAAATCAAAATCATTTATAAGATTATAAAACCA-TATTAAGCAAG-AAAATAGGCTTTTGTAGG
319 TTAAATCAAAATCATTTAAAAAATTCTAAAACCACT-TAAAGCAAGTAAAA-AGGCTTTTGAAGG
* * ** * * * * *
22558383 CATTAGTGATTATAAATAGACATTTCTTGTCAATAGATGGCTTTTGTTTCATGTTTCCCCATGCA
382 TATAAGTGCCTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATGCA
*
22558448 AACATCAAATTATGATATGTTTTAACCATAAATGTAAAAGAAATTCAATTTAAAATCATTTAAAA
447 AACATCAAATTATGATATGTTTTAACCAAAAATGTAAAAGAAATTCAATTTAAAATCATTTAAAA
22558513 AC
512 AC
*
22558515 TTAGAAATCCATTTAAAGCAAGTAGCAAGGCTTTCGAAGGCATGAGTTACTATACCTAGACTTTT
1 TTAGAAATCCACTTAAAG-AAGTAGCAAGGCTTTCGAAGGCATGAGTTACTATACCTAGACTTTT
*
22558580 CTTATCAATGGATGGATTTTTCTTCATGTTTTTCAATGCAAACAACAAGTTATGATCTACTTTAA
65 CTTATCAATGGATGGATTTTTCTTAATGTTTTTCAATGCAAACAACAAGTTATGATCTA-TTTAA
*
22558645 CCAAAAATGAAAAAAAATTCAATTTAAAGTCATTTATAAAGTTATAAATCCACTTAAAGAGAATA
129 CCAAAAATGAAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAATCCACTTAAAGAGAATA
* * * *
22558710 ACAAGGCTTTCGAAGGCATGAGTAACTATAATTGGACGTTCCTTGTCAATGGATGGTTTTTTCCT
194 ACAAGGCTTTCGAAGGCATGAGTGACTATAATTGGACTTTTCTTGTCAATGGATGGTTTTTTCTT
* *
22558775 CACGTTTCT-GATGCAAACACCAAATTATGATCTTTTTTAACCGAAAATGTAAGAAAAATTTAAA
259 CACGTTTCTCGATGCAAACAACAAATTATGATCTTTTTTAACCAAAAATGTAAGAAAAATTTAAA
* *
22558839 TCAAAATCATTTAAAAAAATTCTAAAACCACTTAAAGCAAGTAATAAGCCTTTTGAAGGTATAAG
324 TCAAAATCATTT-AAAAAATTCTAAAACCACTTAAAGCAAGTAAAAAGGCTTTTGAAGGTATAAG
* *
22558904 TGCCTATAAATAGACTTTTTTTGTCAATGGATGGCTTTCACTTCATGTTTCCCAATGCAAACATC
388 TGCCTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATGCAAACATC
* * * *
22558969 AGATTATGATCTATTTTAATCAAAAATGTAAAAGAAATTCAATTTAAAATCATTTAAAAAC
453 AAATTATGATATGTTTTAACCAAAAATGTAAAAGAAATTCAATTTAAAATCATTTAAAAAC
*
22559030 TTAGAAATCCACTTAAAGAGAGTAACAAGGCTTTCGAAGGCATGAGTTACTATACCTAGACTTTT
1 TTAGAAATCCACTTAAAGA-AGTAGCAAGGCTTTCGAAGGCATGAGTTACTATACCTAGACTTTT
* * * *
22559095 CTTATCAATGGATGGCTTTTTCTTTATGTTTTTCGATGCAAACAACAAGTTATGACCTGATTTAA
65 CTTATCAATGGATGGATTTTTCTTAATGTTTTTCAATGCAAACAACAAGTTATGATCT-ATTTAA
* * *
22559160 CCAAAAATGAAAAAAAA-TCAATTTAAAATAATTTATAATGTTATAAATCCACTTAAAGAAAATA
129 CCAAAAATGAAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAATCCACTTAAAGAGAATA
* * *
22559224 ACAAGGCTTTCGAAGGCATGAGTGACTATAATCGGACTTTTCTTGTTAATGGATGGCTTTTTCTT
194 ACAAGGCTTTCGAAGGCATGAGTGACTATAATTGGACTTTTCTTGTCAATGGATGGTTTTTTCTT
* * *
22559289 CACGTTTCTCAATGCAAACATCAAATTATGATCTTTTTTAACCAAAAATGTAAAAGAAAATTTAA
259 CACGTTTCTCGATGCAAACAACAAATTATGATCTTTTTTAACCAAAAATGTAAGA-AAAATTTAA
* * ** * * *
22559354 TTCAAAATCATTTAAAAAGTTCTAAAACCACTTAAAGTGAGTAACAAGGCTTTTAAAGGTATGAG
323 ATCAAAATCATTTAAAAAATTCTAAAACCACTTAAAGCAAGTAAAAAGGCTTTTGAAGGTATAAG
* * * * * ** *
22559419 TGCCTATAAATAAACTTTTCTTGTCAATGGATGTCTTTCGCTTGACGTCTCCTGATGAAAACATC
388 TGCCTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATGCAAACATC
*
22559484 AAATTATGATTTGTTTTAACCAAAAATGTAAAA-AAATT-AATTTAAAATCATTTAAA
453 AAATTATGATATGTTTTAACCAAAAATGTAAAAGAAATTCAATTTAAAATCATTTAAA
22559540 TATTTATTGT
Statistics
Matches: 892, Mismatches: 120, Indels: 28
0.86 0.12 0.03
Matches are distributed among these distances:
513 55 0.06
514 277 0.31
515 534 0.60
516 26 0.03
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.34
Consensus pattern (513 bp):
TTAGAAATCCACTTAAAGAAGTAGCAAGGCTTTCGAAGGCATGAGTTACTATACCTAGACTTTTC
TTATCAATGGATGGATTTTTCTTAATGTTTTTCAATGCAAACAACAAGTTATGATCTATTTAACC
AAAAATGAAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAATCCACTTAAAGAGAATAAC
AAGGCTTTCGAAGGCATGAGTGACTATAATTGGACTTTTCTTGTCAATGGATGGTTTTTTCTTCA
CGTTTCTCGATGCAAACAACAAATTATGATCTTTTTTAACCAAAAATGTAAGAAAAATTTAAATC
AAAATCATTTAAAAAATTCTAAAACCACTTAAAGCAAGTAAAAAGGCTTTTGAAGGTATAAGTGC
CTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATGCAAACATCAAA
TTATGATATGTTTTAACCAAAAATGTAAAAGAAATTCAATTTAAAATCATTTAAAAAC
Found at i:22560951 original size:19 final size:19
Alignment explanation
Indices: 22560900--22560959 Score: 59
Period size: 19 Copynumber: 3.2 Consensus size: 19
22560890 CCATCGTGTG
22560900 CATCCCCCCACATCGTGCA
1 CATCCCCCCACATCGTGCA
**** *
22560919 CAATCAGTGC-CATCGTGTA
1 C-ATCCCCCCACATCGTGCA
22560938 CATCCCCCCACATCGTGCA
1 CATCCCCCCACATCGTGCA
22560957 CAT
1 CAT
22560960 GGGCATTATC
Statistics
Matches: 29, Mismatches: 10, Indels: 4
0.67 0.23 0.09
Matches are distributed among these distances:
18 4 0.14
19 21 0.72
20 4 0.14
ACGTcount: A:0.23, C:0.43, G:0.13, T:0.20
Consensus pattern (19 bp):
CATCCCCCCACATCGTGCA
Found at i:22563023 original size:170 final size:171
Alignment explanation
Indices: 22562469--22567492 Score: 3642
Period size: 170 Copynumber: 29.5 Consensus size: 171
22562459 AGTTTTTATG
* ** * *
22562469 AAATCATTTAT-AAGATTATAAAACCA-TCTAAAGCAAATAA-ATAGGCTTTCGAAGGCATGAAT
1 AAATCATTTATAAAGATTATAAATCCACT-TAAAGTGAGTAACA-AGGCTTTCGAAGGCATGAGT
* * * * * ** *
22562531 GACTATAAATAGACTTTTCTTGTCCATGTATGACTTTTTCGTCACATTTCTCGATG----CA--A
64 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTTCTTCATGTTTCTTGATGCAAACATCA
* * * *
22562590 AATTATGATATGTTTTAACCAAAAAAGAGAAAAATTTAATTTTA
129 AATTATGATCTGTTTTAACCAAAAATGAAAAAAATTCAA-TTTA
* * * * * ** * *
22562634 AAATCATTTAT-ACGATTATAAAACAATTTAAGGAAACTAACTAA-GCTTTCGAGGGCATGAGTG
1 AAATCATTTATAAAGATTATAAATCCACTTAAAGTGAGTAAC-AAGGCTTTCGAAGGCATGAGTG
* * * * * *
22562697 ACTATAAATGGATTTTTCTTATTAATGAATGGTCTTTTTC-TCATGTTTCCTGATCCAAACATCA
65 ACTATAAATGGACTTTTCTTGTCAATGGATGG-CTTTTTCTTCATGTTTCTTGATGCAAACATCA
* **
22562761 AATTATGATATGTTTTAATAAAAAATGTAAAAGAAATTCAATTTA
129 AATTATGATCTGTTTTAACCAAAAATG-AAAA-AAATTCAATTTA
* * * *
22562806 AAATCATTTA-AAA-ACTTAGAAATCCACATAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTT
1 AAATCATTTATAAAGA-TTATAAATCCACTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTG
** * * * * *
22562869 ACTATACCTAGAATTTTCTTAG-CAATGGATGGCTTTTTCTT-ATGTTTTTTTATGCAAACACCA
65 ACTATAAATGGACTTTTCTT-GTCAATGGATGGCTTTTTCTTCATGTTTCTTGATGCAAACATCA
* * *
22562932 AGTTCTGATCTGCTTTAACCAAAAATGAAAAAGAATTCAATTTA
129 AATTATGATCTGTTTTAACCAAAAATGAAAAA-AATTCAATTTA
* * * *
22562976 AAATTATTTATAAAG-TTATAAATCCACTTAAAGAGAATAACAAGGCTTTCGAAGGCATAAGTGA
1 AAATCATTTATAAAGATTATAAATCCACTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTGA
* * * ** *
22563040 CTATAACTGGAAATTTT-TTGTCAATGGATGGCATTTTCTTCACATTTCCTT-ATTCAAACATCA
66 CTATAAATGG-ACTTTTCTTGTCAATGGATGGCTTTTTCTTCATGTTT-CTTGATGCAAACATCA
*** *
22563103 AATTATGATCCT-TTTTAATTGAAAATGTAAAAAAAAAAATT-AATTCA
129 AATTATGAT-CTGTTTTAACCAAAAATG-----AAAAAAATTCAATTTA
* * * * * * *
22563150 AAATCATTTAAAAAG-TTTTAAAACCACTTAAAGTGAGTAACAAGGCTTTTGAAGGTATAAGTGC
1 AAATCATTTATAAAGATTATAAATCCACTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTGA
* * * ** * * *
22563214 CTATAAATAGACTTTTTTTGTCAATGGATGCCTTTCGCTTCATGTCTCCCTGATGTAAACATCAA
66 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTTCTTCATGT-TTCTTGATGCAAACATCAA
* *
22563279 AATATGATCTGTTTTAACCAAAAATGTAAACAAAATT-AATGTA
130 ATTATGATCTGTTTTAACCAAAAATG-AAA-AAAATTCAATTTA
* * * * * * *
22563322 AAATCATTTA-AAAGGTTATAAATCCACTTAAAGGGAGTAAGAAGGATTTTGAAGGCATGGGTTA
1 AAATCATTTATAAAGATTATAAATCCACTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTGA
* * ** **
22563386 CTATAAATGAACTTTTCTTGTCAATGGATGGCTTTTACTTCAAATTTCAAGATGCAAACATCAAA
66 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTTCTTCATGTTTCTTGATGCAAACATCAAA
* * * * *
22563451 TTATGATCTATTTTAATCAAAAATGAGAATAATTAAATTTTA
131 TTATGATCTGTTTTAACCAAAAATGAAAAAAATTCAA-TTTA
* * * * * * * *
22563493 AATTCATTTAT-ATGATTATAAAACCATTTAAAGTGACTAACTAGGCATT-GGAGAGCATGAGTG
1 AAATCATTTATAAAGATTATAAATCCACTTAAAGTGAGTAACAAGGCTTTCGAAG-GCATGAGTG
* **
22563556 ACTAT-AATGGATTTTTCTTGTCAATGGATGG-TTTTTGCTTTACAT-TTT-TCAATGCAAACAA
65 ACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTT-C-TT-CATGTTTCTTGATGCAAAC-A
* * * * * * *
22563617 T-AAAATATGACCTAG-TTCAACCCAAAATGAAAAGAAATTTAAATTG
126 TCAAATTATGATCT-GTTTTAACCAAAAATGAAAA-AAATTCAATTTA
* * * ** ** *
22563663 TAATCATTTAT-AAGATTATAAAACCA-TTGGAAGCAAGTAAGTAGGCTTTTGAAGGCATGAGTG
1 AAATCATTTATAAAGATTATAAATCCACTT-AAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTG
* * * **
22563726 ACTATAAATAGACTTTTCTTGTCAATGTATGGCTTTTTCATCACATTTCTTGATG----CA--AA
65 ACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTTCTTCATGTTTCTTGATGCAAACATCAA
* * * ** *
22563785 ATTATGATTTGTTTTAACAAAAAAAGTGAAAAATTTAATTTTA
130 ATTATGATCTGTTTTAACCAAAAATGAAAAAAATTCAA-TTTA
* * * * ** * * *
22563828 AAATCATTTAT-ATGATTATAAAAT-AATTTAAGGCAACTAACTAGGCTTTCGAGGGCATGAGTG
1 AAATCATTTATAAAGATTAT-AAATCCACTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTG
* * * * *
22563891 ACTATAAATGGACTTTTCTTGTCAATGGATGG-TTTTCGCTTCACGTTGCTCGATG-AAGCAAT-
65 ACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTT-TCTTCATGTTTCTTGATGCAAAC-ATC
* ** * *
22563953 AAACTATGATCTACTTTAACCAAGAACGTAAAAAAATTCAATTTA
128 AAATTATGATCTGTTTTAACCAAAAATG-AAAAAAATTCAATTTA
* * * * *
22563998 AAATCATTCAAAAAG-TTATAAATCCACTTAAAGGGAGTAATAAGGCTTTCGAAGGCATAAGTGA
1 AAATCATTTATAAAGATTATAAATCCACTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTGA
* * * * ** ** *
22564062 ATATAAATAGACTTTTCTTGTCAATGTATGGCCTTTTCTTCACATTTAC-AAATGAAAACATCAA
66 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTTCTTCATGTTT-CTTGATGCAAACATCAA
* * *
22564126 ATTATGATATGTTTTAACTAATAAAGAGAAAAAAAAATTCAATTTGA
130 ATTATGATCTGTTTTAACCAA-AAA-TG--AAAAAAATTCAATTT-A
* * * * * * * *
22564173 AAACCATTTAT-ATGATTATAAAACCATTTAAAGTGACTAACTAGGCTTTCGAGGGTATGAGTGA
1 AAATCATTTATAAAGATTATAAATCCACTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTGA
* * *
22564237 CTATAAATGGACTTTTCTTGTCAATGGATGG-TTTTCGCTTCATGTTTCTTAATGCAAACAACAA
66 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTT-TCTTCATGTTTCTTGATGCAAACATCAA
* * * *
22564301 CA-TATAATCTGTTTTAACCAAAAATTAAAAAAAAAATT-AAATTG
130 -ATTATGATCTGTTTTAACCAAAAA-T--GAAAAAAATTCAATTTA
* * **
22564345 AAATCATTTAT-AAGATTATAAAACCA-TCTAAATTGAGTAA-ATAGGCTTTTAAAGGCATGAGT
1 AAATCATTTATAAAGATTATAAATCCACT-TAAAGTGAGTAACA-AGGCTTTCGAAGGCATGAGT
* * * ** *
22564407 AACTATAAATAGACTTTTCTTGTCAATGTATGGCTTTTTCTTCACATTT-TAAGATGCAAACATC
64 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTTCTTCATGTTTCT-TGATGCAAACATC
* * * *
22564471 AAATTATGATATGTTTTACCCATAAAA-GAGAATAATTCAATTTTA
128 AAATTATGATCTGTTTTAACCA-AAAATGAAAAAAATTCAA-TTTA
* * * * * * *
22564516 TAATCATTTAT-AAGATTATAAAACCATTTAAAGTGACTAACTAGGCTTTCGAGGGTATGAGTGA
1 AAATCATTTATAAAGATTATAAATCCACTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTGA
* * **
22564580 CTATAAATGGACTTTTGTTGTCAATGGATGGCTTTTGCTTCACATTTCTTGATGCAAACATCAAA
66 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTTCTTCATGTTTCTTGATGCAAACATCAAA
* *
22564645 TTACGATCTGTTTTAACCAAGAATGTAAAAAAAAATTCAATTTA
131 TTATGATCTGTTTTAACCAAAAATG---AAAAAAATTCAATTTA
* * ** * *
22564689 AAATTA-TT-TAAAGAGTTACAAATCCAAGTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTG
1 AAATCATTTATAAAGA-TTATAAATCCACTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTG
* * * * * *** *
22564752 ACTTTAAATAGACTTTTCTTGTTAATGTATGGCTTTTTCTTCACGTTTCCCAATGAAAACATCAA
65 ACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTTCTTCATGTTTCTTGATGCAAACATCAA
** * * *
22564817 ATTATGATCAATTTTAACCAAAAAAGAGAAATATTCAATTTTA
130 ATTATGATCTGTTTTAACCAAAAATGAAAAAAATTCAA-TTTA
* * * * * * * * * *
22564860 AAATCATTTAT-ATGATTATAAA-CGATTTAAAGCGA-CAAGCTAGGCTTTTGAGGGTATAAGTG
1 AAATCATTTATAAAGATTATAAATCCACTTAAAGTGAGTAA-CAAGGCTTTCGAAGGCATGAGTG
* * * * * *
22564922 ATTATAAATGGACTTTTGTTGTCAATGGATGG-TTTTCGCTTCATGTTTCCTAATGCAAACAACA
65 ACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTT-TCTTCATGTTTCTTGATGCAAACATCA
* * * ** * *
22564986 AACTATTATTTGTTTTAATTAAAAAT-ATAAAAAATTCAAATTG
129 AATTATGATCTGTTTTAACCAAAAATGA-AAAAAATTCAATTTA
* * * * *
22565029 AAATTATTTAT-AAGTTTATAAAACCA-TCTAAAGTGAGTAA-ATAGGCTTTTGAAGGCATTAGT
1 AAATCATTTATAAAGATTATAAATCCACT-TAAAGTGAGTAACA-AGGCTTTCGAAGGCATGAGT
* * * **
22565091 GACTATAAATAGACTTTTCTTGTTAAGGGATGGCTTTTTCTTCACATTTCTTGATG----CA--A
64 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTTCTTCATGTTTCTTGATGCAAACATCA
* *
22565150 AATTATGATTTGTTTTAACCAAAATAGTG--AAAAATTTAATTTTA
129 AATTATGATCTGTTTTAACCAAAA-A-TGAAAAAAATTCAA-TTTA
* * * * * ** * * * * *
22565194 AAATCATTTAT-ACGATTATAAAACAATTTAAGGCAACTGACTAGGCTTTCGAGGGTATGAGTGA
1 AAATCATTTATAAAGATTATAAATCCACTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTGA
* ** * * * ** *
22565258 CTATAAATGGACTTTTCTTGTCAATGGATGGATTTCGCTTCACGTTTCTCGAT-TAAGTAGCAAA
66 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTTCTTCATGTTTCTTGATGCAAACATCAAA
* ** * * *
22565322 CTATGATCTACTTTAACCAAGAACGTAAAAATATTCAATTTA
131 TTATGATCTGTTTTAACCAAAAATG-AAAAAAATTCAATTTA
* * * *
22565364 AAATCATTCAAAAAG-TTATAAATCCACTTAAAGGGAGTAATAAGGCTTTCGAAGGCATGAGTGA
1 AAATCATTTATAAAGATTATAAATCCACTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTGA
* * * * ** ***
22565428 ATATAAATAGAGTTTTCTTGTCAATGTATGGCTTTTTCTTCACATTTCAAAATGCAAACATCAAA
66 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTTCTTCATGTTTCTTGATGCAAACATCAAA
* * *
22565493 TTATAATCTGTTTTAACTAATAAAGAGAAAAAAATTCAATTTGA
131 TTATGATCTGTTTTAACCAA-AAA-TGAAAAAAATTCAATTT-A
* * * * * * *
22565537 AAACCATTTAT-ATGATTATAAAACCATTTAAAGTGACTAACTAGGCTTTCGAGGGCATGAGTGA
1 AAATCATTTATAAAGATTATAAATCCACTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTGA
* * * *
22565601 CTATAAATAGACTTTTCTTGTCAATGGATGG-TTTTCGCTTCATGTTTCTTAATGCAAACAACAA
66 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTT-TCTTCATGTTTCTTGATGCAAACATCAA
* * * *
22565665 CA-TATAATCTGTTTAAAACAAGAATGTAAAAAAAATTCAATTTA
130 -ATTATGATCTGTTTTAACCAAAAATG--AAAAAAATTCAATTTA
* ** * *
22565709 TAATCA-TT-TAAAGAGTTATAAATCCAAGTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTG
1 AAATCATTTATAAAGA-TTATAAATCCACTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTG
* * * * ** *** * *
22565772 ACTTTAAATAGACTTTTCTTGTTAATGTATGGCTTTTTCTTCACATTTCCCAATGAAAACAGCAA
65 ACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTTCTTCATGTTTCTTGATGCAAACATCAA
** * *
22565837 ATTATGATAAGTTTTAACCAAAAAAGAGAAAAATTCAATTTTA
130 ATTATGATCTGTTTTAACCAAAAATGAAAAAAATTCAA-TTTA
* * * * * * * * *
22565880 AAATCATTTAT-ATGATTATAAA-CCATTTAAAGCGACTAACTAGGCTTTTGAGGGTATAAGTGA
1 AAATCATTTATAAAGATTATAAATCCACTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTGA
* * * *
22565943 CTATAAATGGACTTTTGTTCTCAATGGATGG-TTTTCGCTTCATGTTTCTTGATGCAAACAACAA
66 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTT-TCTTCATGTTTCTTGATGCAAACATCAA
* * * * ** * *
22566007 ACTATTATTTTTTTTAATAAAAAAT-ATAAAAAATTCAAATTG
130 ATTATGATCTGTTTTAACCAAAAATGA-AAAAAATTCAATTTA
* * * * *
22566049 AAATTATTTAT-AAGTTTATAAAACCA-TCTGAAGTGAGTAA-ATAGGCTTTCGAAGGCATTAGT
1 AAATCATTTATAAAGATTATAAATCCACT-TAAAGTGAGTAACA-AGGCTTTCGAAGGCATGAGT
* * * * ** **
22566111 TACTATAAATAGACTTTTCTTGTCAAGGGATGGCTTTTTTTTCAT-TTTGCTCAATGGGAACATC
64 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTTCTTCATGTTT-CTTGATGCAAACATC
* * * * *
22566175 AAATTATGATATGTCTTAACCATAAATG----TAA---AA---G
128 AAATTATGATCTGTTTTAACCAAAAATGAAAAAAATTCAATTTA
* * * *
22566209 AAATCA-TT-TAAAGAGTTATAAATCCACTTAAAGTGAGTAACAAGACTTTCAAAGGCATAAGTT
1 AAATCATTTATAAAGA-TTATAAATCCACTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTG
* ** **
22566272 ACTATAACTGGACTTTTCTTGTCAATGGATAACTTTTTCTTCATGTTT-TCCAATGC--A-A-CA
65 ACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTTCTTCATGTTTCT-TGATGCAAACATCA
* ** * * *
22566332 AGTTATGATCTACTTTAACCAAAAATAAAAAAAATTAAATTTC
129 AATTATGATCTGTTTTAACCAAAAATGAAAAAAATTCAATTTA
* * * * *
22566375 AAATCATTTATAAAG-TTATAAATCCACTTAAAGAGAATAACCAA-GCTTTTGAAAGAATGAGTG
1 AAATCATTTATAAAGATTATAAATCCACTTAAAGTGAGTAA-CAAGGCTTTCGAAGGCATGAGTG
* * * * * * * *** * * *
22566438 ACTATAACTAGACTTTTGTTGTCAACGAAAGG-TTTTCGCTTTGCGTTTCTAGATTCAAAGATCA
65 ACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTT-TCTTCATGTTTCTTGATGCAAACATCA
* ** *
22566502 AATTATGATCTTTTTTAACTGAAAATGTAAAAAAAAAAATTCAATTCA
129 AATTATGATCTGTTTTAACCAAAAATG-----AAAAAAATTCAATTTA
* * * * * * * *
22566550 AAGTCATTTAAAAAG-TTCTAAAGCCACTTAAAGCGAGTAACAAGGCTTTTGAAGGTATGAGTGC
1 AAATCATTTATAAAGATTATAAATCCACTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTGA
* * * * *** *
22566614 CTATAAATGGACTTTTCTTATTAATGGATGGCTTTTGCTTTATGTTTCCAAATGAAAACATCAAA
66 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTTCTTCATGTTTCTTGATGCAAACATCAAA
**
22566679 TTATGATCTGTTTTAACCAAAAATGTAAAAAAA-AAAATTT-
131 TTATGATCTGTTTTAACCAAAAATG-AAAAAAATTCAATTTA
* * * * *
22566719 AAATCATTTAAAAAG-TTATAAATCCATTTAAAGCGAGTAACAAGG-TGTGTC-AGGGCATGTGT
1 AAATCATTTATAAAGATTATAAATCCACTTAAAGTGAGTAACAAGGCT-T-TCGAAGGCATGAGT
* * * *
22566781 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTTGCTTCACGTTTCTCGATGTAAACATT
64 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTT-CTTCATGTTTCTTGATGCAAACATC
* ** *
22566846 AAATTATGATATGTTTTAATGAAAAATATAAAAAAATT-AATTTA
128 AAATTATGATCTGTTTTAACCAAAAAT-GAAAAAAATTCAATTTA
* * * * * *
22566890 AAATCATTTAAAAAG-TTATAAATCCACTTAAAGTGAGTAAAAAGGCTTCCAAATGTATGAGTGA
1 AAATCATTTATAAAGATTATAAATCCACTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTGA
* * * *
22566954 CTATAAATGGCCTTTTCTTGTCAATGGATAGCTTTTGCTTCATGTTTCATGATGCAAACATCAAA
66 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTTCTTCATGTTTCTTGATGCAAACATCAAA
* * * * *
22567019 TTATGATCTATTTTAACCAAAAATTAGAATAATTCTATTTTA
131 TTATGATCTGTTTTAACCAAAAATGAAAAAAATTC-AATTTA
* ** * * * * *
22567061 AAATCATTCA-AAAGATTATAAGA-CCTTTTAAAG-GAACTAACTAGGCTTTCGAAGCCATTAAT
1 AAATCATTTATAAAGATTATAA-ATCCACTTAAAGTG-AGTAACAAGGCTTTCGAAGGCATGAGT
* ** * * * * *
22567123 GACTATAAATGGACTTTTTTTGTCAATAAATGG-TTTTCGCTTCATGTTTCTCGATGGAAATAAC
64 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTT-TCTTCATGTTTCTTGATGCAAACATC
* * * * *
22567187 AAATTATAATTTGTTTTAACCAAAAATGAAAACAATTGAATTTG
128 AAATTATGATCTGTTTTAACCAAAAATGAAAAAAATTCAATTTA
* * * * * *
22567231 AAATCATTTAT-AAGATTATAAAACCATTTGAAGCGAGTAA-ATAGGCTTTTGAAGTCATGAGTG
1 AAATCATTTATAAAGATTATAAATCCACTTAAAGTGAGTAACA-AGGCTTTCGAAGGCATGAGTG
* * * ** * **
22567294 ACTATAAATGGACTTATCTTATCAACGGATGGCTTTCACTTCATATTTCTCAATGCAAACATCAA
65 ACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTTCTTCATGTTTCTTGATGCAAACATCAA
* * *
22567359 ATTACGATCTGTTTTAACTAGAAATGTAAAAAAATTTCAATTTA
130 ATTATGATCTGTTTTAACCAAAAATG-AAAAAAA-TTCAATTTA
* * *
22567403 AAATCATTTA-AAA-ACTTATAAATCCACTTAAAGTGACTAATAAGGCTTTCAAAGGCATGAGTG
1 AAATCATTTATAAAGA-TTATAAATCCACTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTG
* * *
22567466 ACTATAAATAGACCTTCCTTGTCAATG
65 ACTATAAATGGACTTTTCTTGTCAATG
22567493 TTTCCAGATG
Statistics
Matches: 3833, Mismatches: 823, Indels: 399
0.76 0.16 0.08
Matches are distributed among these distances:
156 22 0.01
157 1 0.00
158 2 0.00
159 6 0.00
160 90 0.02
161 5 0.00
163 4 0.00
164 43 0.01
165 296 0.08
166 97 0.03
167 8 0.00
168 10 0.00
169 184 0.05
170 1082 0.28
171 733 0.19
172 534 0.14
173 286 0.07
174 141 0.04
175 279 0.07
176 10 0.00
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35
Consensus pattern (171 bp):
AAATCATTTATAAAGATTATAAATCCACTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTGA
CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTTCTTCATGTTTCTTGATGCAAACATCAAA
TTATGATCTGTTTTAACCAAAAATGAAAAAAATTCAATTTA
Found at i:22564656 original size:343 final size:342
Alignment explanation
Indices: 22562469--22567493 Score: 3924
Period size: 343 Copynumber: 14.8 Consensus size: 342
22562459 AGTTTTTATG
* ** * * * * *
22562469 AAATCATTTATAAGATTATAAAACCATCTAAAGCAAATAAATAGGCTTTCGAAGGCATGAATGAC
1 AAATCATTTATAAGATTATAAAACCATTTAAAGTGACTAACTAGGCTTTCGAGGGTATGAGTGAC
* * * * * * ** *
22562534 TATAAATAGACTTTTCTTGTCCATGTATGACTTTTTCGTCACATTTCTCGATG----CA--AAAT
66 TATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTGATGCAAACATCAAAT
* ** * * * * *
22562593 TATGATATGTTTTAACCAAAAAAGAGAAAAATTTAATTTTAAAATCATTTATACGA-TTATAAAA
131 TATGATCTGTTTTAACCAAAAATTAAAAAAAATTAA-ATTAAAATCATTTATAAGAGTTATAAAT
* * * ** * * * * * * * *
22562657 CAATTTAAGGAAACTAACTAAGCTTTCGAGGGCATGAGTGACTATAAATGGATTTTTCTTATTAA
195 CCATCTAAAGCGAGTAAATAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAA
* ** * * *
22562722 TGAATGGTCTTTTTC-TCATGTTTCCT-GATCCAAACATCAAATTATGATATGTTTTAA-TAAAA
260 TGTATGG-CTTTTTCTTCACATTT-CTAGATGCAAACATCAAATTATGATATGTTTTAACCATAA
*
22562784 AATGTAAAAGAAATTCAA-TTTA
323 AA-G-AGAA-AAATTCAATTTTA
* * * ** * * * *
22562806 AAATCATTTA-AAAACTTAGAAATCCACATAAAGTGAGTAA-TAAGGCTTTCGAAGGCATGAGTT
1 AAATCATTTATAAGA-TTATAAAACCATTTAAAGTGACTAACT-AGGCTTTCGAGGGTATGAGTG
** * * * * * *
22562869 ACTATACCTAGAATTTTCTTAG-CAATGGATGGCTTTTTCTT-ATGTTTTTTTATGCAAACACCA
64 ACTATAAATGGACTTTTCTT-GTCAATGGATGGCTTTTGCTTCATGTTTCTTGATGCAAACATCA
* * * * * * *
22562932 AGTTCTGATCTGCTTTAACCAAAAATGAAAAAGAATTCAATTTAAAATTATTTATAA-AGTTATA
128 AATTATGATCTGTTTTAACCAAAAATTAAAAAAAATT-AAATTAAAATCATTTATAAGAGTTATA
* * * * * *
22562996 AATCCA-CTTAAAGAGAATAACA-AGGCTTTCGAAGGCATAAGTGACTATAACTGGAAATTTT-T
192 AATCCATC-TAAAGCGAGTAA-ATAGGCTTTCGAAGGCATGAGTGACTATAAATAG-ACTTTTCT
* * * * *
22563058 TGTCAATGGATGGCATTTTCTTCACATTTCCT-TATTCAAACATCAAATTATGATCCT-TTTTAA
254 TGTCAATGTATGGCTTTTTCTTCACATTT-CTAGATGCAAACATCAAATTATGAT-ATGTTTT-A
** * *
22563121 TTGAAAATGTAAAA-AAAAAAATT-AA-TTCA
316 ---ACCA--TAAAAGAGAAAAATTCAATTTTA
* * * * * * * * *
22563150 AAATCATTTA-AAAAGTTTTAAAACCACTTAAAGTGAGTAACAAGGCTTTTGAAGGTATAAGTGC
1 AAATCATTTATAAGA-TTATAAAACCATTTAAAGTGACTAACTAGGCTTTCGAGGGTATGAGTGA
* * * * * * *
22563214 CTATAAATAGACTTTTTTTGTCAATGGATGCCTTTCGCTTCATGTCTCCCTGATGTAAACATCAA
65 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGT-TTCTTGATGCAAACATCAA
* * *
22563279 AATATGATCTGTTTTAACCAAAAATGTAAACAAAATT-AATGTAAAATCATTTAAAAG-GTTATA
129 ATTATGATCTGTTTTAACCAAAAAT-TAAAAAAAATTAAAT-TAAAATCATTTATAAGAGTTATA
* * * * *
22563342 AATCCA-CTTAAAGGGAGTAAGA-AGGATTTTGAAGGCATGGGTTACTATAAAT-GAACTTTTCT
192 AATCCATC-TAAAGCGAGTAA-ATAGGCTTTCGAAGGCATGAGTGACTATAAATAG-ACTTTTCT
* * * * * * *
22563404 TGTCAATGGATGGCTTTTACTTCAAATTTCAAGATGCAAACATCAAATTATGATCTATTTTAATC
254 TGTCAATGTATGGCTTTTTCTTCACATTTCTAGATGCAAACATCAAATTATGATATGTTTTAACC
* *
22563469 A-AAAATGAGAATAATTAAATTTTA
319 ATAAAA-GAGAAAAATTCAATTTTA
* * * * * *
22563493 AATTCATTTATATGATTATAAAACCATTTAAAGTGACTAACTAGGCATTGGAGAGCATGAGTGAC
1 AAATCATTTATAAGATTATAAAACCATTTAAAGTGACTAACTAGGCTTTCGAGGGTATGAGTGAC
* * **
22563558 TAT-AATGGATTTTTCTTGTCAATGGATGGTTTTTGCTTTACAT-TTT-TCAATGCAAACAAT-A
66 TATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGC-TT-CATGTTTCTTGATGCAAAC-ATCA
* * * * * * **
22563619 AAATATGACCTAG-TTCAACCCAAAATGAAAAGAAATTTAAATTGTAATCATTTATAAGA-TTAT
128 AATTATGATCT-GTTTTAACCAAAAATTAAAA-AAAATTAAATTAAAATCATTTATAAGAGTTAT
* * * * *
22563682 AAAACCAT-TGGAAGCAAGTAAGTAGGCTTTTGAAGGCATGAGTGACTATAAATAGACTTTTCTT
191 AAATCCATCT-AAAGCGAGTAAATAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTT
* * * *
22563746 GTCAATGTATGGCTTTTTCATCACATTTCTTGATG----CA--AAATTATGATTTGTTTTAACAA
255 GTCAATGTATGGCTTTTTCTTCACATTTCTAGATGCAAACATCAAATTATGATATGTTTTAACCA
* * *
22563805 AAAAAGTGAAAAATTTAATTTTA
320 TAAAAGAGAAAAATTCAATTTTA
* ** * ** *
22563828 AAATCATTTATATGATTATAAAATAATTTAAGGCAACTAACTAGGCTTTCGAGGGCATGAGTGAC
1 AAATCATTTATAAGATTATAAAACCATTTAAAGTGACTAACTAGGCTTTCGAGGGTATGAGTGAC
* * * *
22563893 TATAAATGGACTTTTCTTGTCAATGGATGG-TTTTCGCTTCACGTTGCTCGATG-AAGCAAT-AA
66 TATAAATGGACTTTTCTTGTCAATGGATGGCTTTT-GCTTCATGTTTCTTGATGCAAAC-ATCAA
* ** ** * * *
22563955 ACTATGATCTACTTTAACCAAGAACGT-AAAAAAATTCAATTTAAAATCATTCA-AAAAGTTATA
129 ATTATGATCTGTTTTAACCAA-AAATTAAAAAAAATT-AAATTAAAATCATTTATAAGAGTTATA
* * *
22564018 AATCCA-CTTAAAGGGAGT-AATAAGGCTTTCGAAGGCATAAGTGAATATAAATAGACTTTTCTT
192 AATCCATC-TAAAGCGAGTAAAT-AGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTT
* * *
22564081 GTCAATGTATGGCCTTTTCTTCACATTTAC-AAATGAAAACATCAAATTATGATATGTTTTAACT
255 GTCAATGTATGGCTTTTTCTTCACATTT-CTAGATGCAAACATCAAATTATGATATGTTTTAAC-
* * *
22564145 AATAAAGAGAAAAAAAAATTCAATTTGA
318 CATAAA-AG--AGAAAAATTCAATTTTA
* *
22564173 AAACCATTTATATGATTATAAAACCATTTAAAGTGACTAACTAGGCTTTCGAGGGTATGAGTGAC
1 AAATCATTTATAAGATTATAAAACCATTTAAAGTGACTAACTAGGCTTTCGAGGGTATGAGTGAC
* *
22564238 TATAAATGGACTTTTCTTGTCAATGGATGG-TTTTCGCTTCATGTTTCTTAATGCAAACAACAAC
66 TATAAATGGACTTTTCTTGTCAATGGATGGCTTTT-GCTTCATGTTTCTTGATGCAAACATCAA-
* *
22564302 A-TATAATCTGTTTTAACCAAAAATTAAAAAAAAAATTAAATTGAAATCATTTATAAGA-TTATA
129 ATTATGATCTGTTTTAACCAAAAATT--AAAAAAAATTAAATTAAAATCATTTATAAGAGTTATA
* ** ** *
22564365 AAACCATCTAAATTGAGTAAATAGGCTTTTAAAGGCATGAGTAACTATAAATAGACTTTTCTTGT
192 AATCCATCTAAAGCGAGTAAATAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGT
*
22564430 CAATGTATGGCTTTTTCTTCACATTT-TAAGATGCAAACATCAAATTATGATATGTTTTACCCAT
257 CAATGTATGGCTTTTTCTTCACATTTCT-AGATGCAAACATCAAATTATGATATGTTTTAACCAT
*
22564494 AAAAGAGAATAATTCAATTTTA
321 AAAAGAGAAAAATTCAATTTTA
*
22564516 TAATCATTTATAAGATTATAAAACCATTTAAAGTGACTAACTAGGCTTTCGAGGGTATGAGTGAC
1 AAATCATTTATAAGATTATAAAACCATTTAAAGTGACTAACTAGGCTTTCGAGGGTATGAGTGAC
* **
22564581 TATAAATGGACTTTTGTTGTCAATGGATGGCTTTTGCTTCACATTTCTTGATGCAAACATCAAAT
66 TATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTGATGCAAACATCAAAT
* * * * *
22564646 TACGATCTGTTTTAACCAAGAATGTAAAAAAAAATTCAATTTAAAATTATTTA-AAGAGTTACAA
131 TATGATCTGTTTTAACCAAAAAT-T-AAAAAAAATT-AAATTAAAATCATTTATAAGAGTTATAA
** *
22564710 ATCCAAGTAAAGCGAGT-AATAAGGCTTTCGAAGGCATGAGTGACTTTAAATAGACTTTTCTTGT
193 ATCCATCTAAAGCGAGTAAAT-AGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGT
* * * * *
22564774 TAATGTATGGCTTTTTCTTCACGTTTCCCA-ATGAAAACATCAAATTATGATCA-ATTTTAACCA
257 CAATGTATGGCTTTTTCTTCACATTT-CTAGATGCAAACATCAAATTATGAT-ATGTTTTAACCA
* *
22564837 AAAAAGAGAAATATTCAATTTTA
320 TAAAAGAGAAAAATTCAATTTTA
* * * * *
22564860 AAATCATTTATATGATTAT-AAACGATTTAAAGCGAC-AAGCTAGGCTTTTGAGGGTATAAGTGA
1 AAATCATTTATAAGATTATAAAACCATTTAAAGTGACTAA-CTAGGCTTTCGAGGGTATGAGTGA
* * * * *
22564923 TTATAAATGGACTTTTGTTGTCAATGGATGG-TTTTCGCTTCATGTTTCCTAATGCAAACAACAA
65 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTT-GCTTCATGTTTCTTGATGCAAACATCAA
* * * ** * * * *
22564987 ACTATTATTTGTTTTAATTAAAAA-TATAAAAAATTCAAATTGAAATTATTTATAAG-TTTATAA
129 ATTATGATCTGTTTTAACCAAAAATTAAAAAAAATT-AAATTAAAATCATTTATAAGAGTTATAA
* * * * *
22565050 AACCATCTAAAGTGAGTAAATAGGCTTTTGAAGGCATTAGTGACTATAAATAGACTTTTCTTGTT
193 ATCCATCTAAAGCGAGTAAATAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTC
* * * *
22565115 AAGGGATGGCTTTTTCTTCACATTTCTTGATG----CA--AAATTATGATTTGTTTTAACCA-AA
258 AATGTATGGCTTTTTCTTCACATTTCTAGATGCAAACATCAAATTATGATATGTTTTAACCATAA
* *
22565173 ATAGTGAAAAATTTAATTTTA
323 A-AGAGAAAAATTCAATTTTA
* * * ** *
22565194 AAATCATTTATACGATTATAAAACAATTTAAGGCAACTGACTAGGCTTTCGAGGGTATGAGTGAC
1 AAATCATTTATAAGATTATAAAACCATTTAAAGTGACTAACTAGGCTTTCGAGGGTATGAGTGAC
* * * * * ** * *
22565259 TATAAATGGACTTTTCTTGTCAATGGATGGATTTCGCTTCACGTTTCTCGAT-TAAGTAGCAAAC
66 TATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTGATGCAAACATCAAAT
** ** * * * *
22565323 TATGATCTACTTTAACCAAGAACGT-AAAAATATTCAATTTAAAATCATTCA-AAAAGTTATAAA
131 TATGATCTGTTTTAACCAA-AAATTAAAAAAAATT-AAATTAAAATCATTTATAAGAGTTATAAA
* * *
22565386 TCCA-CTTAAAGGGAGT-AATAAGGCTTTCGAAGGCATGAGTGAATATAAATAGAGTTTTCTTGT
194 TCCATC-TAAAGCGAGTAAAT-AGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGT
* * * * *
22565449 CAATGTATGGCTTTTTCTTCACATTTCAAAATGCAAACATCAAATTATAATCTGTTTTAACTAAT
257 CAATGTATGGCTTTTTCTTCACATTTCTAGATGCAAACATCAAATTATGATATGTTTTAAC-CAT
* *
22565514 AAAGAGAAAAAAATTCAATTTGA
321 AAA-AGAGAAAAATTCAATTTTA
* * *
22565537 AAACCATTTATATGATTATAAAACCATTTAAAGTGACTAACTAGGCTTTCGAGGGCATGAGTGAC
1 AAATCATTTATAAGATTATAAAACCATTTAAAGTGACTAACTAGGCTTTCGAGGGTATGAGTGAC
* * *
22565602 TATAAATAGACTTTTCTTGTCAATGGATGG-TTTTCGCTTCATGTTTCTTAATGCAAACAACAAC
66 TATAAATGGACTTTTCTTGTCAATGGATGGCTTTT-GCTTCATGTTTCTTGATGCAAACATCAA-
* * * * * *
22565666 A-TATAATCTGTTTAAAACAAGAATGTAAAAAAAATTCAATTTATAATCATTTA-AAGAGTTATA
129 ATTATGATCTGTTTTAACCAAAAAT-TAAAAAAAATT-AAATTAAAATCATTTATAAGAGTTATA
** *
22565729 AATCCAAGTAAAGCGAGT-AATAAGGCTTTCGAAGGCATGAGTGACTTTAAATAGACTTTTCTTG
192 AATCCATCTAAAGCGAGTAAAT-AGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTG
* * * * *
22565793 TTAATGTATGGCTTTTTCTTCACATTTCCCA-ATGAAAACAGCAAATTATGATAAGTTTTAACCA
256 TCAATGTATGGCTTTTTCTTCACATTT-CTAGATGCAAACATCAAATTATGATATGTTTTAACCA
*
22565857 AAAAAGAGAAAAATTCAATTTTA
320 TAAAAGAGAAAAATTCAATTTTA
* * * *
22565880 AAATCATTTATATGATTAT-AAACCATTTAAAGCGACTAACTAGGCTTTTGAGGGTATAAGTGAC
1 AAATCATTTATAAGATTATAAAACCATTTAAAGTGACTAACTAGGCTTTCGAGGGTATGAGTGAC
* * *
22565944 TATAAATGGACTTTTGTTCTCAATGGATGG-TTTTCGCTTCATGTTTCTTGATGCAAACAACAAA
66 TATAAATGGACTTTTCTTGTCAATGGATGGCTTTT-GCTTCATGTTTCTTGATGCAAACATCAAA
* * * * * * * * * *
22566008 CTATTATTTTTTTTAA-TAAAAAATATAAAAAATTCAAATTGAAATTATTTATAAG-TTTATAAA
130 TTATGATCTGTTTTAACCAAAAATTAAAAAAAATT-AAATTAAAATCATTTATAAGAGTTATAAA
* * * * *
22566071 ACCATCTGAAGTGAGTAAATAGGCTTTCGAAGGCATTAGTTACTATAAATAGACTTTTCTTGTCA
194 TCCATCTAAAGCGAGTAAATAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCA
* * * * ** *
22566136 AGGGATGGCTTTTTTTTCA-TTTTGCTCA-ATGGGAACATCAAATTATGATATGTCTTAACCAT-
259 ATGTATGGCTTTTTCTTCACATTT-CT-AGATGCAAACATCAAATTATGATATGTTTTAACCATA
* * *
22566198 AAA-TG--TAA---AA----G
322 AAAGAGAAAAATTCAATTTTA
* * * * * * * * * *
22566209 AAATCATTTA-AAGAGTTATAAATCCACTTAAAGTGAGTAACAAGACTTTCAAAGGCATAAGTTA
1 AAATCATTTATAAGA-TTATAAAACCATTTAAAGTGACTAACTAGGCTTTCGAGGGTATGAGTGA
* ** * **
22566273 CTATAACTGGACTTTTCTTGTCAATGGATAACTTTTTCTTCATGTTT-TCCAATGC--A-A-CAA
65 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCT-TGATGCAAACATCAA
* ** *
22566333 GTTATGATCTACTTTAACCAAAAA-TAAAAAAAATTAAATTTCAAATCATTTATAA-AGTTATAA
129 ATTATGATCTGTTTTAACCAAAAATTAAAAAAAATTAAA-TTAAAATCATTTATAAGAGTTATAA
* * ** * * * * * *
22566396 ATCCA-CTTAAAGAGAATAACCAAGCTTTTGAAAGAATGAGTGACTATAACTAGACTTTTGTTGT
193 ATCCATC-TAAAGCGAGTAAATAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGT
* * * * ** * * * * *
22566460 CAACGAAAGG-TTTTCGCTTTGCGTTTCTAGATTCAAAGATCAAATTATGATCTTTTTTAACTGA
257 CAATGTATGGCTTTT-TCTTCACATTTCTAGATGCAAACATCAAATTATGATATGTTTTAAC---
* * *
22566524 AAATGTAAAA-AAAAAAATTCAA-TTCA
318 -CA--TAAAAGAGAAAAATTCAATTTTA
* * * * * * * * * * *
22566550 AAGTCATTTA-AAAAGTTCTAAAGCCACTTAAAGCGAGTAACAAGGCTTTTGAAGGTATGAGTGC
1 AAATCATTTATAAGA-TTATAAAACCATTTAAAGTGACTAACTAGGCTTTCGAGGGTATGAGTGA
* * * *** *
22566614 CTATAAATGGACTTTTCTTATTAATGGATGGCTTTTGCTTTATGTTTCCAAATGAAAACATCAAA
65 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTGATGCAAACATCAAA
* *
22566679 TTATGATCTGTTTTAACCAAAAATGTAAAAAAAA--AAATTTAAATCATTTA-AAAAGTTATAAA
130 TTATGATCTGTTTTAACCAAAAAT-TAAAAAAAATTAAATTAAAATCATTTATAAGAGTTATAAA
* * * *
22566741 TCCATTTAAAGCGAGTAACA-AGG-TGTGTC-AGGGCATGTGTGACTATAAATGGACTTTTCTTG
194 TCCATCTAAAGCGAGTAA-ATAGGCT-T-TCGAAGGCATGAGTGACTATAAATAGACTTTTCTTG
* * * * * **
22566803 TCAATGGATGGCTTTTTGCTTCACGTTTCTCGATGTAAACATTAAATTATGATATGTTTTAATGA
256 TCAATGTATGGCTTTTT-CTTCACATTTCTAGATGCAAACATCAAATTATGATATGTTTTAACCA
* * *
22566868 AAAATATAAAAAAATT-AA-TTTA
320 TAAA-AGAGAAAAATTCAATTTTA
* * * * ** * * **
22566890 AAATCATTTA-AAAAGTTATAAATCCACTTAAAGTGAGTAAAAAGGCTTCCAAATGTATGAGTGA
1 AAATCATTTATAAGA-TTATAAAACCATTTAAAGTGACTAACTAGGCTTTCGAGGGTATGAGTGA
* * *
22566954 CTATAAATGGCCTTTTCTTGTCAATGGATAGCTTTTGCTTCATGTTTCATGATGCAAACATCAAA
65 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTGATGCAAACATCAAA
* * * * ** * *
22567019 TTATGATCTATTTTAACCAAAAATTAGAATAATTCTATTTTAAAATCATTCAAAAGA-TTATAAG
130 TTATGATCTGTTTTAACCAAAAATTAAAAAAAAT-TAAATTAAAATCATTTATAAGAGTTATAA-
* * * * * * * * *
22567083 A-CCTTTTAAAG-GAACTAACTAGGCTTTCGAAGCCATTAATGACTATAAATGGACTTTTTTTGT
193 ATCCATCTAAAGCG-AGTAAATAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGT
** * ** * * * * * *
22567146 CAATAAATGG-TTTTCGCTTCATGTTTCTCGATGGAAATAACAAATTATAATTTGTTTTAACCA-
257 CAATGTATGGCTTTT-TCTTCACATTTCTAGATGCAAACATCAAATTATGATATGTTTTAACCAT
* *
22567209 AAAATGA-AAACAATTGAA-TTTG
321 AAAA-GAGAAA-AATTCAATTTTA
* * * * * *
22567231 AAATCATTTATAAGATTATAAAACCATTTGAAGCGAGTAAATAGGCTTTTGA-AGTCATGAGTGA
1 AAATCATTTATAAGATTATAAAACCATTTAAAGTGACTAACTAGGCTTTCGAGGGT-ATGAGTGA
* * * ** * **
22567295 CTATAAATGGACTTATCTTATCAACGGATGGCTTTCACTTCATATTTCTCAATGCAAACATCAAA
65 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTGATGCAAACATCAAA
* * * * * * *
22567360 TTACGATCTGTTTTAACTAGAAATGTAAAAAAATTTCAATTTAAAATCATTTA-AAAACTTATAA
130 TTATGATCTGTTTTAACCAAAAAT-TAAAAAAAATT-AAATTAAAATCATTTATAAGAGTTATAA
* * * * *
22567424 ATCCA-CTTAAAGTGACT-AATAAGGCTTTCAAAGGCATGAGTGACTATAAATAGACCTTCCTTG
193 ATCCATC-TAAAGCGAGTAAAT-AGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTG
22567487 TCAATGT
256 TCAATGT
22567494 TTCCAGATGC
Statistics
Matches: 3815, Mismatches: 683, Indels: 375
0.78 0.14 0.08
Matches are distributed among these distances:
325 9 0.00
326 127 0.03
327 9 0.00
328 4 0.00
329 15 0.00
330 74 0.02
331 4 0.00
332 1 0.00
333 8 0.00
334 92 0.02
335 408 0.11
336 61 0.02
337 81 0.02
338 4 0.00
339 29 0.01
340 390 0.10
341 483 0.13
342 452 0.12
343 507 0.13
344 354 0.09
345 360 0.09
346 180 0.05
347 143 0.04
348 16 0.00
349 4 0.00
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35
Consensus pattern (342 bp):
AAATCATTTATAAGATTATAAAACCATTTAAAGTGACTAACTAGGCTTTCGAGGGTATGAGTGAC
TATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTGATGCAAACATCAAAT
TATGATCTGTTTTAACCAAAAATTAAAAAAAATTAAATTAAAATCATTTATAAGAGTTATAAATC
CATCTAAAGCGAGTAAATAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAAT
GTATGGCTTTTTCTTCACATTTCTAGATGCAAACATCAAATTATGATATGTTTTAACCATAAAAG
AGAAAAATTCAATTTTA
Found at i:22568939 original size:172 final size:171
Alignment explanation
Indices: 22567597--22570104 Score: 2155
Period size: 171 Copynumber: 14.7 Consensus size: 171
22567587 GGGTTTCTAG
* * * *
22567597 GGCATGAGTGACTATAAATAAACTTTTTTTGTCAGTGGATGGCTTTTGT-TTCACGTTTCTCGAT
1 GGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTT-TCTTCATGTTTCTCGAT
* *
22567661 GCAAACATCAAATTATGATCTATTTTAACTAAAAATGTAAAACAAATTCAATTTAAAATCATTTA
65 GCAAACATCAAATTATGATCTGTTTTAACCAAAAATGTAAAA-AAATTCAATTTAAAATCATTTA
* * ** * *
22567726 AAAAATTATAAATCTGCTTAAAGCGAGTAATAAGGTTTTTGAA
129 TAAAGTTATAAATCCACTTAAAGCGAATAATAAGGCTTTTGAA
* * * * * * * **
22567769 GGCATGAATTACTGTAACTAGACTTTTCTTTTTAATGGATAGCTTTTTCTTCATAGTTT-TTAAT
1 GGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTTCTTCAT-GTTTCTCGAT
* * * * * *
22567833 GAAAAACAACAAGTTATGATATGCTTTAACCAAAAATGAAAAACAAATTCAATTTAAAATCATTT
65 G-CAAACATCAAATTATGATCTGTTTTAACCAAAAATGTAAAA-AAATTCAATTTAAAATCATTT
* * *
22567898 ATAAAGTTATAAATCCACTTAAAGAGAATAACAAGGCTTTCGAA
128 ATAAAGTTATAAATCCACTTAAAGCGAATAATAAGGCTTTTGAA
* * * *
22567942 GGCATGAGTGACTATAACT-GTACTTTTTTTTATCAATGGATGGCTTTTTCTTC-TCGTTTCTTG
1 GGCATGAGTGACTATAAATAG-AC-TTTTCTTGTCAATGGATGGCTTTTTCTTCAT-GTTTCTCG
* * * * * *
22568005 ATGTAAACATCAAATTATGATATTTTTTAACTAAAAATGTAAAAAGAAAATCAATTCAAAATCAT
63 ATGCAAACATCAAATTATGATCTGTTTTAACCAAAAATGT-AAAA-AAATTCAATTTAAAATCAT
* * * *
22568070 TTAAAAAGTTCTGAAAT-CACTTAAAGTGAATAACAAGGCTTTT-ATA
126 TTATAAAGTTAT-AAATCCACTTAAAGCGAATAATAAGGCTTTTGA-A
* * * ** *
22568116 GGTATGAGT-ACCTATAAATGGACTTTTCTTGTCAATGGAT-GCCTTCGCTTCACGTCTTCT-GA
1 GGCATGAGTGA-CTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTTCTTCATGT-TTCTCGA
* * *** *
22568178 TGCAAATATCAAATTATGATTTGTTTTAA-CAAAAATG-ATAAGGTATTCAATCTAAAATCATTT
64 TGCAAACATCAAATTATGATCTGTTTTAACCAAAAATGTA-AAAAAATTCAATTTAAAATCATTT
* * * *
22568241 ATAAAGTTCTAAAACCACTTAAAGCGAGTAATAAGGCTCTTGAA
128 ATAAAGTTATAAATCCACTTAAAGCGAATAATAAGGCTTTTGAA
* * * * * *
22568285 GGCATGA-TGA-TGATAAATGGACTTTTCTTGTCAACGGA-AGATTTTCGCTTCATGTTTC-CTT
1 GGCATGAGTGACT-ATAAATAGACTTTTCTTGTCAATGGATGGCTTTT-TCTTCATGTTTCTC-G
* ** * * * *
22568346 ATGCAAAGAAGAAATTATAATCTATTTTAACCAAAAATGAAAAAAAAATTCAATTTGAAATCATT
63 ATGCAAACATCAAATTATGATCTGTTTTAACCAAAAATG-TAAAAAAATTCAATTTAAAATCATT
* * * * * ***
22568411 TAT-AAGATTGTAAAACCATTTGAAGCGAGTAA-ATAGGCTTCCCAA
127 TATAAAG-TTATAAATCCACTTAAAGCGAATAATA-AGGCTTTTGAA
* * * ** * *
22568456 GCCATGAGTGACTATAAATAGACTTTTGTTGTTAATGGATGGCTTTCGCTTCATGTTTTTGGATG
1 GGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTTCTTCATGTTTCTCGATG
* * * * * * *
22568521 AAAACATCAAA-TATGATATGTTTTAACTAAAAATGTAAAAAACATTAAATTAAAAATAATTTAA
66 CAAACATCAAATTATGATCTGTTTTAACCAAAAATGTAAAAAA-ATTCAATTTAAAATCATTTAT
* ** *
22568585 AAAGTTATAAGTCCACTTAAAGC-AAGTAATAAGGGGTATGAA
130 AAAGTTATAAATCCACTTAAAGCGAA-TAATAAGGCTTTTGAA
** ** *
22568627 GGCATGAGTGACTAT-AATAGACTTTTCTTGTCAATGGATGGCTTTCACTTCACATTTC-CTAAT
1 GGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTTCTTCATGTTTCTC-GAT
** *
22568690 GCAAACATCAAATTACAATCTGTTTTAACCAAAAATGTAAAAAAAAAATTCAATTAAAAATCATT
65 GCAAACATCAAATTATGATCTGTTTTAACCAAAAATGT---AAAAAAATTCAATTTAAAATCATT
*
22568755 TA-AAAGTTATAAATCTACTTAAAGCGAATAATAAGGCTTTTGAA
127 TATAAAGTTATAAATCCACTTAAAGCGAATAATAAGGCTTTTGAA
* * * * * * *
22568799 GGTATGAGTGGCTATAAATAGACTTTTTTTTGTCAATGTATGCCTTTTTCTTCATGTTTTTTGAT
1 GGCATGAGTGACTATAAATAGAC-TTTTCTTGTCAATGGATGGCTTTTTCTTCATGTTTCTCGAT
* * * * *
22568864 GCAAACATCAAATTATGATTTTTTTTAACTAAAAAAG-AGAAAAATTCAATTTTAAAATCATTTA
65 GCAAACATCAAATTATGATCTGTTTTAACCAAAAATGTAAAAAAATTCAA-TTTAAAATCATTTA
* * * * *
22568928 TATAA-TTATAAAACCATTTAAAG-TAACTAACTAA-GCTTTCGAT
129 TA-AAGTTATAAATCCACTTAAAGCGAA-TAA-TAAGGCTTTTGAA
* * * * *
22568971 GGCATGAGTGACTATAAATGGACTTTGCTTTTCAATGGATTG-TTTTTGCTTTATGTTTCTCGAT
1 GGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTT-CTTCATGTTTCTCGAT
*
22569035 GGAAACATCAAATTATGATCTGTTTTAACCAAAAATGTAAAAGAAATTCAATTTAAAATCATTTA
65 GCAAACATCAAATTATGATCTGTTTTAACCAAAAATGTAAAA-AAATTCAATTTAAAATCATTTA
* ** * * *
22569100 CAATTTTATAAAT-CAGCTTAAAGCGAGTAACAAGGCTTTAGAA
129 TAAAGTTATAAATCCA-CTTAAAGCGAATAATAAGGCTTTTGAA
* * * * * * *
22569143 GCCATGAGTTACTGTAATTGGAC-TTTCTTGTCAATGGATGCCTTTTTCTTCATGTTTTTCGATG
1 GGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTTCTTCATGTTTCTCGATG
* * * *
22569207 CAAACA--AATAGTTATGATCTGCTTTAACCAAAAATGGAAAAAAAATTCAATTTAAATTAATTT
66 CAAACATCAA-A-TTATGATCTGTTTTAACCAAAAAT-GTAAAAAAATTCAATTTAAAATCATTT
* * ** * * **
22569270 ATAAAGGTATAAAT-CAATATAAAAAGAATAATAAAGATTTCAAA
128 ATAAAGTTATAAATCCACT-TAAAGCGAATAATAAGGCTTTTGAA
* * ** ** *
22569314 GGC---A-TGACTATAAGTAGACCTTTCTCATCAATGGATGGCTTTTTCTTCACCTTT-TCCAGT
1 GGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTTCTTCATGTTTCTCGA-T
* * *
22569374 GCAAACATCAAATTATGATCTTTTTTAACCAAAAATGTAAAAAAAATTCAATTCAAAATCATTGA
65 GCAAACATCAAATTATGATCTGTTTTAACCAAAAATGT-AAAAAAATTCAATTTAAAATCATTTA
* * * **
22569439 AAAAGTTCTAAAACCACTT--AGC-AAGTAATAAGGCTTTCAAA
129 TAAAGTTATAAATCCACTTAAAGCGAA-TAATAAGGCTTTTGAA
*
22569480 TGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGT-TTCATGTTTC-CTGA
1 GGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTT-TCTTCATGTTTCTC-GA
* * *
22569543 TGCAAACATCAAATTATGATCTGTTTTAACCAAAAATGTAAACCAAATTCAATTTAAAGTTATTT
64 TGCAAACATCAAATTATGATCTGTTTTAACCAAAAATGTAAA-AAAATTCAATTTAAAATCATTT
* * * * *
22569608 A-AAAGGTTATAAATCCGCTTAAAGTGACTAACAAGGCTTTCGAA
128 ATAAA-GTTATAAATCCACTTAAAGCGAATAATAAGGCTTTTGAA
* * * * * *
22569652 GGCATGAGTTACTATAATTGGACTTTTCTTGTCAATAGATAGCTTTTTCTTCATGTTT-TCCAAT
1 GGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTTCTTCATGTTTCT-CGAT
* * * * * * *
22569716 GCAAACAACAAGTAATGATTTGCTTTAACCAAAAATGAAAAAAAATTCAATTTAAAAACATTTAT
65 GCAAACATCAAATTATGATCTGTTTTAACCAAAAATGTAAAAAAATTCAATTTAAAATCATTTAT
* ** *
22569781 AAAGTTATAAATCCA-TTAAAGAGAATAACGAGGCTTTTAAA
130 AAAGTTATAAATCCACTTAAAGCGAATAATAAGGCTTTTGAA
* * * * * * *
22569822 GGCATGGGTGACTAT-AATTGAACTTTTCCTATCAATGGATGGTTTTTTCTTCATGTTTCCCAAT
1 GGCATGAGTGACTATAAATAG-ACTTTTCTTGTCAATGGATGGCTTTTTCTTCATGTTTCTCGAT
* ** * *
22569886 GCAAACATCAAATTATGATCTTTTTTAACTGAAAATGTAAAAAAAATCAATTCAAAATCATTTCA
65 GCAAACATCAAATTATGATCTGTTTTAACCAAAAATGTAAAAAAATTCAATTTAAAATCATTT-A
* * * * * * *
22569951 -AAAGTTTTAAAACCA-TGTAAGGTGAGTAACAAGGCATTTGAA
129 TAAAGTTATAAATCCACT-TAAAGCGAATAATAAGGCTTTTGAA
* * * * * * *
22569993 -GCTATGAGTGCCTATAAATGGACTTTTCTT-TCCAATGGTTGGCTTTTGCTTCATGTCTCGCAA
1 GGC-ATGAGTGACTATAAATAGACTTTTCTTGT-CAATGGATGGCTTTTTCTTCATGTTTCTCGA
* * * *
22570056 TGCAAACATCAAATTATGATATATTTTAACCAAAAATGTTAAGAAATTC
64 TGCAAACATCAAATTATGATCTGTTTTAACCAAAAATGTAAAAAAATTC
22570105 TGTGATACCC
Statistics
Matches: 1887, Mismatches: 358, Indels: 183
0.78 0.15 0.08
Matches are distributed among these distances:
165 2 0.00
166 17 0.01
167 16 0.01
168 127 0.07
169 104 0.06
170 341 0.18
171 482 0.26
172 407 0.22
173 216 0.11
174 170 0.09
175 5 0.00
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35
Consensus pattern (171 bp):
GGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTTCTTCATGTTTCTCGATG
CAAACATCAAATTATGATCTGTTTTAACCAAAAATGTAAAAAAATTCAATTTAAAATCATTTATA
AAGTTATAAATCCACTTAAAGCGAATAATAAGGCTTTTGAA
Found at i:22570526 original size:19 final size:20
Alignment explanation
Indices: 22570502--22570539 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
22570492 TTATAAATAC
*
22570502 CTTGAATTT-CCAGCAGCTT
1 CTTGAATTTACCAACAGCTT
22570521 CTTGAATTTACCAACAGCT
1 CTTGAATTTACCAACAGCT
22570540 AGTCTTCTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.34
Consensus pattern (20 bp):
CTTGAATTTACCAACAGCTT
Found at i:22571452 original size:43 final size:43
Alignment explanation
Indices: 22571334--22571455 Score: 131
Period size: 43 Copynumber: 2.8 Consensus size: 43
22571324 TGACTCGGCT
* **
22571334 ATGTGCGAGTAGGGAGTGCGCATAAGTTGAG-GATGACCCGATT
1 ATGTGCAAGTAGGGAGTGCGCATAAGTTG-GTGATGACCCGACC
* ***
22571377 ATGTGCGAGTAGGGAGTGCGCATAACCCGGTGATGACCC-AGCC
1 ATGTGCAAGTAGGGAGTGCGCATAAGTTGGTGATGACCCGA-CC
* *
22571420 ATGTGTAAGTAGGGAGTGCGCATGAGTTGGTGATGA
1 ATGTGCAAGTAGGGAGTGCGCATAAGTTGGTGATGA
22571456 TGATGATGGG
Statistics
Matches: 66, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
42 2 0.03
43 64 0.97
ACGTcount: A:0.25, C:0.16, G:0.38, T:0.22
Consensus pattern (43 bp):
ATGTGCAAGTAGGGAGTGCGCATAAGTTGGTGATGACCCGACC
Found at i:22571503 original size:10 final size:10
Alignment explanation
Indices: 22571470--22571504 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
22571460 GATGGGTATG
22571470 TATGTATATA
1 TATGTATATA
*
22571480 TATATATATA
1 TATGTATATA
*
22571490 TATGTAAATA
1 TATGTATATA
22571500 TATGT
1 TATGT
22571505 GTTATAGGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.49
Consensus pattern (10 bp):
TATGTATATA
Found at i:22575498 original size:134 final size:133
Alignment explanation
Indices: 22575258--22575525 Score: 500
Period size: 134 Copynumber: 2.0 Consensus size: 133
22575248 TACAAGGAGC
*
22575258 ACAATGTTTCTCTAAGATAGATTTACGATCTGGGTACCATCAATTGAGGATCTGAAATGATGATG
1 ACAATGTTTCTCTAAGATAGATTTACGATCTGGGTACCATCAATTGAGGATCTGAAATGAAGATG
22575323 TACCAAAGACCGCATTTCGAACAAGATATGGGCACTATGAGTTCTTGATGATGTCATTTGGGCTC
66 TACCAAAGACCGCATTTCGAACAAGATATGGGCACTATGAGTTCTTGATGATGTCATTTGGGCTC
22575388 ACG
131 ACG
* *
22575391 NACAATTTTTCTCTAAGATAGATTTGCGATCTGGGTACCATCAATTGAGGATCTGAAATGAAGAT
1 -ACAATGTTTCTCTAAGATAGATTTACGATCTGGGTACCATCAATTGAGGATCTGAAATGAAGAT
22575456 GTACCAAAGACCGCATTTCGAACAAGATATGGGCACTATGAGTTCTTGATGATGTCATTTGGGCT
65 GTACCAAAGACCGCATTTCGAACAAGATATGGGCACTATGAGTTCTTGATGATGTCATTTGGGCT
22575521 CACG
130 CACG
22575525 A
1 A
22575526 ATGCTCCTGC
Statistics
Matches: 131, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
133 1 0.01
134 130 0.99
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.30
Consensus pattern (133 bp):
ACAATGTTTCTCTAAGATAGATTTACGATCTGGGTACCATCAATTGAGGATCTGAAATGAAGATG
TACCAAAGACCGCATTTCGAACAAGATATGGGCACTATGAGTTCTTGATGATGTCATTTGGGCTC
ACG
Found at i:22579917 original size:60 final size:60
Alignment explanation
Indices: 22579750--22579917 Score: 201
Period size: 60 Copynumber: 2.8 Consensus size: 60
22579740 CTATAGCATC
* * * *
22579750 TCGCTGCAGCGAAATACATTCTCGCTGCAGCGAGAAACTTTCTGTTTCTGGGTAACAATT
1 TCGCTGCAGCGAGATTCAATCTCGCTGCAGCGAGAAACTTTCTGTTTTTGGGTAACAATT
* * * * * * * *
22579810 TCGCTACAACGAGAATGAATTTCGCTGTAGCGAGAAACATTCTGTTTTTGGGTTACAATT
1 TCGCTGCAGCGAGATTCAATCTCGCTGCAGCGAGAAACTTTCTGTTTTTGGGTAACAATT
* * *
22579870 TCGCTGCAGCGAGATTCAATCTCGCTGCAACGAAAAACTTTTTGTTTT
1 TCGCTGCAGCGAGATTCAATCTCGCTGCAGCGAGAAACTTTCTGTTTT
22579918 GGTCTCCTAT
Statistics
Matches: 86, Mismatches: 22, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
60 86 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (60 bp):
TCGCTGCAGCGAGATTCAATCTCGCTGCAGCGAGAAACTTTCTGTTTTTGGGTAACAATT
Found at i:22582731 original size:173 final size:170
Alignment explanation
Indices: 22582375--22584443 Score: 1914
Period size: 173 Copynumber: 12.1 Consensus size: 170
22582365 CCAAACCCAT
* * *
22582375 CATGAGTTACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCCCAATGCA
1 CATGAGTGACTATAAATGG-CTTTTCTTGTCAATGGATGGCTTTTGTTTCATGTTTCTCAATGCA
* * * **
22582440 AACATCAAATTATGATTTATTTTAACC-AAGAGTGTAAAAAAATTCAATTTAAAATCATTTAAAA
65 AACATCAAATTATGATCTGTTTTAACCAAAAAAAG-AAAAAAATTCAATTTAAAATCATTTAAAA
** *
22582504 AGTTATAAGCCCACTTAAAGTAAGTAATAAGGCTTTCGAAGG
129 AGTTATAAATCCACTTAAAGCAAGTAATAAGGCTTTCGAAGG
*
22582546 CATAAGTGACTATAAATAGGCTTTTCTTGTCAATGGATGGCTTTTGTTTCATGTTTCTCAATGCA
1 CATGAGTGACTATAAAT-GGCTTTTCTTGTCAATGGATGGCTTTTGTTTCATGTTTCTCAATGCA
22582611 AACATCAAATTATGATCTGTTTTAACCAAAAAAAAAGAAAAAAATTCAATTTAAAATCATTTAAA
65 AACATCAAATTATGATCTGTTTTAACC--AAAAAAAGAAAAAAATTCAATTTAAAATCATTTAAA
**
22582676 AAGTTATAAATCCACTTAAAGTGAGTAATAAGGCTTTCGAAGG
128 AAGTTATAAATCCACTTAAAGCAAGTAATAAGGCTTTCGAAGG
* * * * *
22582719 CTTGAGTGACTATAAATTGACTTTTCTTGTCAATGTATGG-TTTTTTCTTCATGTTTCCCAATGC
1 CATGAGTGACTATAAA-TGGCTTTTCTTGTCAATGGATGGCTTTTGT-TTCATGTTTCTCAATGC
* * *
22582783 GAACATCAAATTATGATCTGTTTTAACC-AAAAAAGAGAAAAATTTAATTTTAAAATCATTTAAA
64 AAACATCAAATTATGATCTGTTTTAACCAAAAAAAGAAAAAAATTCAA-TTTAAAATCATTTAAA
*
22582847 AAGTTATAAATCCACTTAAAGCGAA-TAATAAGG-TTTCCGAATG
128 AAGTTATAAATCCACTTAAAGC-AAGTAATAAGGCTTT-CGAAGG
* * * * * *
22582890 CATGAGTTACTATAAATTGCCTTTTCTGGTCAATGTATGG-TTTTTTTTCTTTATGTTTCCCAAT
1 CATGAGTGACTATAAA-TGGCTTTTCTTGTCAATGGATGGCTTTTGTTTC---ATGTTTCTCAAT
* * * * *
22582954 GCGAACATCAAATCATAATCTGTTTTAACTAAAAAAAAAAAGAAAACTTCAATTTTAAAATCATT
62 GCAAACATCAAATTATGATCTGTTTTAACCAAAAAAAGAAA-AAAA-TTCAA-TTTAAAATCATT
* * * * *
22583019 T-ATACGATTATAAAACCATTTAAAGCAACTAAATAA-GCTTTC-AAGGG
124 TAAAAAG-TTATAAATCCACTTAAAGCAAGT-AATAAGGCTTTCGAA-GG
* * * *
22583066 CATGAGTGACTGTAAATGGACTTTTCTTATCAATGGATGG-TTTTCGCTTCACGTTTC-CTAATG
1 CATGAGTGACTATAAATGG-CTTTTCTTGTCAATGGATGGCTTTT-GTTTCATGTTTCTC-AATG
* *
22583129 CAAACATCAAATTATGATATGTTTTAACC-AAAAATGTAAAAGAAATTCAATTTAAAATCATTTA
63 CAAACATCAAATTATGATCTGTTTTAACCAAAAAAAG-AAAA-AAATTCAATTTAAAATCATTTA
* ** * * * *
22583193 AAAACTTATAAATCTGCTAAAAGCGAGTAACAAGGCTTTCAAAGG
126 AAAAGTTATAAATCCACTTAAAGCAAGTAATAAGGCTTTCGAAGG
* * * * ** *
22583238 CACGAGTTACTATAACTGGACTTTTCTTGTTAATGGATAGTTTTTTCTTTACAT-TTT-TCAATG
1 CATGAGTGACTATAAATGG-CTTTTCTTGTCAATGGAT-GGCTTTTGTTT-CATGTTTCTCAATG
* * * * *
22583301 CCAACAACAAGTTATGATCTGTTTTAACCAAAAATA-AAAAAAA-T-AATTTAAAATCATTTATA
63 CAAACATCAAATTATGATCTGTTTTAACCAAAAAAAGAAAAAAATTCAATTTAAAATCATTTAAA
* *
22583363 AAGTTATAAATCCACTTAAAG-AGAATAACAAGGCTTTCGAAGG
128 AAGTTATAAATCCACTTAAAGCA-AGTAATAAGGCTTTCGAAGG
* * *
22583406 CATGAGTGACTATAATTGGACTTTTCTTGTCAATGGATAGCTTTT-TATTCATGTTTC-CTAAAG
1 CATGAGTGACTATAAATGG-CTTTTCTTGTCAATGGATGGCTTTTGT-TTCATGTTTCTC-AATG
* * * * * * *
22583469 TAAACATTAAATTATGATCTTTTTTAACTAAAAATGTTAA-AAAAAATTTCAATTCAAAGTCATT
63 CAAACATCAAATTATGATCTGTTTTAACCAAAAA----AAGAAAAAAATTCAATTTAAAATCATT
* * * * *
22583533 AAAAAAGTTCTAAAACCACTTAAAGCAAGTAACAAGGCGTAT-GAAGG
124 TAAAAAGTTATAAATCCACTTAAAGCAAGTAATAAGGC-TTTCGAAGG
* * * * **
22583580 TATGAGTGATTGTAAATGGACTTTTCTTGTTAATGGATGGCTTTTGTTTCACATTTCTCAATGCA
1 CATGAGTGACTATAAATGG-CTTTTCTTGTCAATGGATGGCTTTTGTTTCATGTTTCTCAATGCA
* * * *
22583645 AACATCAAATTATGATCTGTTTTAACC-AAAAATGTAAAAAATTCAATTGAAAATTATTTAAAAA
65 AACATCAAATTATGATCTGTTTTAACCAAAAAAAGAAAAAAATTCAATTTAAAATCATTTAAAAA
*
22583709 GTTATAAATCCACTTAAAGCAAGTAATAAGGCTTTTGAAGG
130 GTTATAAATCCACTTAAAGCAAGTAATAAGGCTTTCGAAGG
* * *
22583750 CATGAGTGACTATAAATAGACTTTTCTTGTCAATGTATGGCTTTT-TCTTCATGTTTCCCAATGC
1 CATGAGTGACTATAAAT-GGCTTTTCTTGTCAATGGATGGCTTTTGT-TTCATGTTTCTCAATGC
*
22583814 AAACATCAAATTATGATCTGTTTTAACC-AAAAAAGAGAAAAATTCAATTTTAAAATCATTTAGA
64 AAACATCAAATTATGATCTGTTTTAACCAAAAAAAGAAAAAAATTCAA-TTTAAAATCATTTA-A
* * * * * * * *
22583878 CAA-TTATAAAACCATTTGAAGCAACTAATTAGGCTTTTGAGGG
127 AAAGTTATAAATCCACTTAAAGCAAGTAATAAGGCTTTCGAAGG
* ** * * * * *
22583921 CATGAGTGACTGTAAAT-G--AAT-TTGTCAATTGATGGTTTTTGCTTCACGTTTCTCGATGCAA
1 CATGAGTGACTATAAATGGCTTTTCTTGTCAATGGATGGCTTTTGTTTCATGTTTCTCAATGCAA
* * * * * * * *
22583982 GCAACAAACTATGATCTATTTTAACC--AAAAAGAAAAAAATTCAAATTGAAAGCATTT-ATAAG
66 ACATCAAATTATGATCTGTTTTAACCAAAAAAAGAAAAAAATTCAATTTAAAATCATTTAAAAAG
* ** **
22584044 ATTATAAAACCA-TCTAAAGTTAGTAA-ATAGGCTTTTAAAGG
131 -TTATAAATCCACT-TAAAGCAAGTAATA-AGGCTTTCGAAGG
* * * * * * * *
22584085 CATTAGTGACTGTAAATAGACTTTTATTGTCAATGGATAGCTTTTGTTTCACGTTTC-CTGATAC
1 CATGAGTGACTATAAAT-GGCTTTTCTTGTCAATGGATGGCTTTTGTTTCATGTTTCTC-AATGC
* * * *
22584149 AAACATAAAATTATGATCTTTTTTAA-CAAAAAATGTAAAAGAAATTCAATTTAAAATCATTTTA
64 AAACATCAAATTATGATCTGTTTTAACCAAAAAAAG-AAAA-AAATTCAATTTAAAATCATTTAA
* *
22584213 AAAGTTATAAATCCACTTAAAGCAAGAAACAAGGCTTTCGAAGG
127 AAAGTTATAAATCCACTTAAAGCAAGTAATAAGGCTTTCGAAGG
* ** * * * * ** * *
22584257 CATGAGTTACTATACCTAGACTTCTCTTGCCAATGGATGGCTTTTTTTTTCACATTTTTCGATGC
1 CATGAGTGACTATAAAT-GGCTTTTCTTGTCAATGGATGGC-TTTTGTTTCATGTTTCTCAATGC
* * ** *
22584322 AAACAACAAGTTATGATCTACTTTAACCAAAAATGAA-AAAAAAA-TCAATTTAAAATCATTTAT
64 AAACATCAAATTATGATCTGTTTTAACCAAAAA--AAGAAAAAAATTCAATTTAAAATCATTTAA
* * * * **
22584385 AAAGTTATAAATCCATTTAAAGGGAA-TAACAAGGCTTTCAAAAA
127 AAAGTTATAAATCCACTTAAA-GCAAGTAATAAGGCTTTCGAAGG
*
22584429 TATGAGTGACTATAA
1 CATGAGTGACTATAA
22584444 CTAGACTTTT
Statistics
Matches: 1578, Mismatches: 242, Indels: 155
0.80 0.12 0.08
Matches are distributed among these distances:
162 3 0.00
163 1 0.00
164 56 0.04
165 17 0.01
166 58 0.04
167 11 0.01
168 119 0.08
169 57 0.04
170 184 0.12
171 250 0.16
172 259 0.16
173 266 0.17
174 193 0.12
175 18 0.01
176 75 0.05
177 11 0.01
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.35
Consensus pattern (170 bp):
CATGAGTGACTATAAATGGCTTTTCTTGTCAATGGATGGCTTTTGTTTCATGTTTCTCAATGCAA
ACATCAAATTATGATCTGTTTTAACCAAAAAAAGAAAAAAATTCAATTTAAAATCATTTAAAAAG
TTATAAATCCACTTAAAGCAAGTAATAAGGCTTTCGAAGG
Found at i:22582916 original size:171 final size:171
Alignment explanation
Indices: 22582375--22584460 Score: 2049
Period size: 172 Copynumber: 12.2 Consensus size: 171
22582365 CCAAACCCAT
* * * *
22582375 CATGAGTTACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCCCAATGCA
1 CATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGTTTTTTCTTCATGTTTCCCAATGCA
* * * **
22582440 AACATCAAATTATGATTTATTTTAACCAAGAGTGTAAAAAAATTCAATTTAAAATCATTTAAAAA
66 AACATCAAATTATGATCTGTTTTAACCAAAAAAGTAAAAAAATTCAATTTAAAATCATTTAAAAA
** *
22582505 GTTATAAGCCCACTTAAAGTAAGTAATAAGGCTTTCGAAGG
131 GTTATAAATCCACTTAAAGCAAGTAATAAGGCTTTCGAAGG
* * * *
22582546 CATAAGTGACTATAAATAGGCTTTTCTTGTCAATGGATGGCTTTTGT-TTCATGTTTCTCAATGC
1 CATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGG-TTTTTTCTTCATGTTTCCCAATGC
22582610 AAACATCAAATTATGATCTGTTTTAACCAAAAAAAAAG-AAAAAAATTCAATTTAAAATCATTTA
65 AAACATCAAATTATGATCTGTTTTAACC---AAAAAAGTAAAAAAATTCAATTTAAAATCATTTA
**
22582674 AAAAGTTATAAATCCACTTAAAGTGAGTAATAAGGCTTTCGAAGG
127 AAAAGTTATAAATCCACTTAAAGCAAGTAATAAGGCTTTCGAAGG
* * * *
22582719 CTTGAGTGACTATAAATTGACTTTTCTTGTCAATGTATGGTTTTTTCTTCATGTTTCCCAATGCG
1 CATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGTTTTTTCTTCATGTTTCCCAATGCA
* *
22582784 AACATCAAATTATGATCTGTTTTAACCAAAAAAG-AGAAAAATTTAATTTTAAAATCATTTAAAA
66 AACATCAAATTATGATCTGTTTTAACCAAAAAAGTAAAAAAATTCAA-TTTAAAATCATTTAAAA
*
22582848 AGTTATAAATCCACTTAAAGCGAA-TAATAAGG-TTTCCGAATG
130 AGTTATAAATCCACTTAAAGC-AAGTAATAAGGCTTT-CGAAGG
* * * * * *
22582890 CATGAGTTACTATAAATTGCCTTTTCTGGTCAATGTATGGTTTTTTTTCTTTATGTTTCCCAATG
1 CATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGG--TTTTTTCTTCATGTTTCCCAATG
* * * * **
22582955 CGAACATCAAATCATAATCTGTTTTAACTAAAAAAAAAAAGAAAACTTCAATTTTAAAATCATTT
64 CAAACATCAAATTATGATCTGTTTTAACCAAAAAAGTAAA-AAAA-TTCAA-TTTAAAATCATTT
* * * * *
22583020 -ATACGATTATAAAACCATTTAAAGCAACTAAATAA-GCTTTC-AAGGG
126 AAAAAG-TTATAAATCCACTTAAAGCAAGT-AATAAGGCTTTCGAA-GG
* * * ** * *
22583066 CATGAGTGACTGTAAATGGACTTTTCTTATCAATGGATGGTTTTCGCTTCACGTTTCCTAATGCA
1 CATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGTTTTTTCTTCATGTTTCCCAATGCA
* *
22583131 AACATCAAATTATGATATGTTTTAACCAAAAATGTAAAAGAAATTCAATTTAAAATCATTTAAAA
66 AACATCAAATTATGATCTGTTTTAACCAAAAAAGTAAAA-AAATTCAATTTAAAATCATTTAAAA
* ** * * * *
22583196 ACTTATAAATCTGCTAAAAGCGAGTAACAAGGCTTTCAAAGG
130 AGTTATAAATCCACTTAAAGCAAGTAATAAGGCTTTCGAAGG
* * * * * * *
22583238 CACGAGTTACTATAACTGGACTTTTCTTGTTAATGGATAGTTTTTTCTTTACAT-TTT-TCAATG
1 CATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGTTTTTTC-TT-CATGTTTCCCAATG
* * * * *
22583301 CCAACAACAAGTTATGATCTGTTTTAACC-AAAAA-TAAAAAAAAT-AATTTAAAATCATTTATA
64 CAAACATCAAATTATGATCTGTTTTAACCAAAAAAGTAAAAAAATTCAATTTAAAATCATTTAAA
* *
22583363 AAGTTATAAATCCACTTAAAG-AGAATAACAAGGCTTTCGAAGG
129 AAGTTATAAATCCACTTAAAGCA-AGTAATAAGGCTTTCGAAGG
* * * * * * * *
22583406 CATGAGTGACTATAATTGGACTTTTCTTGTCAATGGATAGCTTTTTATTCATGTTTCCTAAAGTA
1 CATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGTTTTTTCTTCATGTTTCCCAATGCA
* * * * * * *
22583471 AACATTAAATTATGATCTTTTTTAACTAAAAATGTTAAAAAAAATTTCAATTCAAAGTCATTAAA
66 AACATCAAATTATGATCTGTTTTAACCAAAAAAG-T-AAAAAAA-TTCAATTTAAAATCATTTAA
* * * *
22583536 AAAGTTCTAAAACCACTTAAAGCAAGTAACAAGGCGTAT-GAAGG
128 AAAGTTATAAATCCACTTAAAGCAAGTAATAAGGC-TTTCGAAGG
* * * * * * ** *
22583580 TATGAGTGATTGTAAATGGACTTTTCTTGTTAATGGATGGCTTTTGT-TTCACATTTCTCAATGC
1 CATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGG-TTTTTTCTTCATGTTTCCCAATGC
* * *
22583644 AAACATCAAATTATGATCTGTTTTAACCAAAAATGT-AAAAAATTCAATTGAAAATTATTTAAAA
65 AAACATCAAATTATGATCTGTTTTAACCAAAAAAGTAAAAAAATTCAATTTAAAATCATTTAAAA
*
22583708 AGTTATAAATCCACTTAAAGCAAGTAATAAGGCTTTTGAAGG
130 AGTTATAAATCCACTTAAAGCAAGTAATAAGGCTTTCGAAGG
* *
22583750 CATGAGTGACTATAAATAGACTTTTCTTGTCAATGTATGGCTTTTTCTTCATGTTTCCCAATGCA
1 CATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGTTTTTTCTTCATGTTTCCCAATGCA
* *
22583815 AACATCAAATTATGATCTGTTTTAACCAAAAAAG-AGAAAAATTCAATTTTAAAATCATTTAGAC
66 AACATCAAATTATGATCTGTTTTAACCAAAAAAGTAAAAAAATTCAA-TTTAAAATCATTTA-AA
* * * * * * *
22583879 AA-TTATAAAACCATTTGAAGCAACTAATTAGGCTTTTGAGGG
129 AAGTTATAAATCCACTTAAAGCAAGTAATAAGGCTTTCGAAGG
* * * * * * *
22583921 CATGAGTGACTGTAAAT-GA---AT-TTGTCAATTGATGGTTTTTGCTTCACGTTTCTCGATGCA
1 CATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGTTTTTTCTTCATGTTTCCCAATGCA
* * * * * * * *
22583981 AGCAACAAACTATGATCTATTTTAACC-AAAAAG-AAAAAAATTCAAATTGAAAGCATTT-ATAA
66 AACATCAAATTATGATCTGTTTTAACCAAAAAAGTAAAAAAATTCAATTTAAAATCATTTAAAAA
* ** **
22584043 GATTATAAAACCA-TCTAAAGTTAGTAA-ATAGGCTTTTAAAGG
131 G-TTATAAATCCACT-TAAAGCAAGTAATA-AGGCTTTCGAAGG
* * * * * * ** *
22584085 CATTAGTGACTGTAAATAGACTTTTATTGTCAATGGATAGCTTTTGT-TTCACGTTTCCTGATAC
1 CATGAGTGACTATAAATAGACTTTTCTTGTCAATGGAT-GGTTTTTTCTTCATGTTTCCCAATGC
* * *
22584149 AAACATAAAATTATGATCTTTTTTAA-CAAAAAATGTAAAAGAAATTCAATTTAAAATCATTTTA
65 AAACATCAAATTATGATCTGTTTTAACCAAAAAA-GTAAAA-AAATTCAATTTAAAATCATTTAA
* *
22584213 AAAGTTATAAATCCACTTAAAGCAAGAAACAAGGCTTTCGAAGG
128 AAAGTTATAAATCCACTTAAAGCAAGTAATAAGGCTTTCGAAGG
* ** * * * ** ** *
22584257 CATGAGTTACTATACCTAGACTTCTCTTGCCAATGGATGGCTTTTTTTTTCACATTTTTCGATGC
1 CATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGG-TTTTTTCTTCATGTTTCCCAATGC
* * ** * * * *
22584322 AAACAACAAGTTATGATCTACTTTAACCAAAAATGAAAAAAAAATCAATTTAAAATCATTTATAA
65 AAACATCAAATTATGATCTGTTTTAACCAAAAAAGTAAAAAAATTCAATTTAAAATCATTTAAAA
* * * * **
22584387 AGTTATAAATCCATTTAAAGGGAA-TAACAAGGCTTTCAAAAA
130 AGTTATAAATCCACTTAAA-GCAAGTAATAAGGCTTTCGAAGG
* * *
22584429 TATGAGTGACTATAACTAGACTTTTCCTGTCA
1 CATGAGTGACTATAAATAGACTTTTCTTGTCA
22584461 CGACCCAGAA
Statistics
Matches: 1592, Mismatches: 261, Indels: 123
0.81 0.13 0.06
Matches are distributed among these distances:
162 3 0.00
163 1 0.00
164 56 0.04
165 19 0.01
166 58 0.04
167 6 0.00
168 120 0.08
169 65 0.04
170 178 0.11
171 246 0.15
172 286 0.18
173 264 0.17
174 192 0.12
175 18 0.01
176 72 0.05
177 8 0.01
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.35
Consensus pattern (171 bp):
CATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGTTTTTTCTTCATGTTTCCCAATGCA
AACATCAAATTATGATCTGTTTTAACCAAAAAAGTAAAAAAATTCAATTTAAAATCATTTAAAAA
GTTATAAATCCACTTAAAGCAAGTAATAAGGCTTTCGAAGG
Found at i:22587026 original size:29 final size:29
Alignment explanation
Indices: 22586971--22587026 Score: 78
Period size: 28 Copynumber: 1.9 Consensus size: 29
22586961 GACAAGTGTC
*
22586971 AGGTGTGTAAAATTACAATTTTGCCCTTG
1 AGGTGTGTAAAATTACAATTTTCCCCTTG
*
22587000 AGGTG-GTAAAATTACCATTTTACCCCT
1 AGGTGTGTAAAATTACAATTTT-CCCCT
22587027 ATGCTCCGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 15 0.62
29 9 0.38
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.36
Consensus pattern (29 bp):
AGGTGTGTAAAATTACAATTTTCCCCTTG
Found at i:22588088 original size:172 final size:172
Alignment explanation
Indices: 22587802--22588719 Score: 932
Period size: 172 Copynumber: 5.3 Consensus size: 172
22587792 TTCCTATCAG
* ** * *
22587802 TGGATGGCTTTCGCTTCA-CATTTCTTGATG-AAACCATCAAATTATGATCTATTTGAACCAAAA
1 TGGATGGCTTTCTCTTCATGTTTTCCTGATGCAAA-CATCAAATTATGATCTATTTTAACCAAAA
* * * * * *
22587865 ATGTAAAAAAAATTCAATTCAAAATTATTTAAAAAGGTATAAATCCACTTAAAGCAAATAACTAG
65 ATGTAAAAGAAATTCAATTCAAAATCATTTTAAAAGTTATAAATCCACTTAAAGCAAGTAACAAG
* * *
22587930 GCGTATGAAGGCATGAGTGCCTATAAATAGACTTTTCTTGTCAA
130 GC-TTTAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAA
* * *
22587974 TGGATGGCTTTCTCTTCATGTTTTCCT-ATGCAAACATCAAATTATGATATTTTTTAACTAAAAA
1 TGGATGGCTTTCTCTTCATGTTTTCCTGATGCAAACATCAAATTATGATCTATTTTAACCAAAAA
* **
22588038 TGTAAAAGAAATTCAATTTAAAATCATTTTAAAAGTTATAAATCCACTTAAAGTGAGTAACAAGG
66 TGTAAAAGAAATTCAATTCAAAATCATTTTAAAAGTTATAAATCCACTTAAAGCAAGTAACAAGG
* * * ** * *
22588103 CTTTCGAAGGTATGAGTTACTATACCTGGACTTCTCTTGTCAA
131 CTTT-AAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAA
* ** * * * * *
22588146 TGGATGGCTTTTTCTTCACATTTT-TTGATGCAAACAACAAGTTATGATCTATTTTAACTAAAAC
1 TGGATGGCTTTCTCTTCATGTTTTCCTGATGCAAACATCAAATTATGATCTATTTTAACCAAAAA
* * *
22588210 TGAAAAAAAAATT-AATTGAAAATCA-TTTATAAAGTTATAAATCCACTTAAGAG-AA-TAACAA
66 TGTAAAAGAAATTCAATTCAAAATCATTTTA-AAAGTTATAAATCCACTTAA-AGCAAGTAACAA
* *
22588271 GGCTTTCAAA-ACTATGAGTGACTATAATTAGACTTTTCTTGTCAA
129 GGCTTT-AAAGGC-ATGAGTGACTATAAATAGACTTTTCTTGTCAA
* * * * *
22588316 TGAATGGCTTTCGCTTCATGTTTTCC-AATGGAAACATCAAATTATGATCTATTTGAACCAAAAA
1 TGGATGGCTTTCTCTTCATGTTTTCCTGATGCAAACATCAAATTATGATCTATTTTAACCAAAAA
* *
22588380 TGTAAAAAAAGAAA-TCAATTCAAAATCATTTAAAAAGTTATAAATCCACTTAAACCAAGTAACA
66 TGT---AAAAGAAATTCAATTCAAAATCATTTTAAAAGTTATAAATCCACTTAAAGCAAGTAACA
*
22588444 AGGCATATAAAGGCATGAGTGACTATAAAT-GAACTTTTCTTGTCAA
128 AGGC-TTTAAAGGCATGAGTGACTATAAATAG-ACTTTTCTTGTCAA
* * * * * ** * *
22588490 TAGTTGGCTTT-TGCTTCATG-TTTACTAAGGCAAACATCAAATTACAATCTGTTTTAACCAAGA
1 TGGATGGCTTTCT-CTTCATGTTTTCCTGATGCAAACATCAAATTATGATCTATTTTAACCAAAA
* * ** *
22588553 ATGTAAAAGAAATTCAATTTAAAATCATTTTAAAAGTTATAAATCAACTTAAAGTGAGTAATAAG
65 ATGTAAAAGAAATTCAATTCAAAATCATTTTAAAAGTTATAAATCCACTTAAAGCAAGTAACAAG
* ** ** *
22588618 ACTTTTAAAGATATGAGTGAGAATAAATAGACTTTTTTTTGTCAA
130 GC-TTTAAAGGCATGAGTGACTATAAATAGAC-TTTTCTTGTCAA
* * * *
22588663 TGTATGGCTTTTTCTTCATG-TTT-CTCGATGCAAACATCAAATTATGATTTGTTTTAA
1 TGGATGGCTTTCTCTTCATGTTTTCCT-GATGCAAACATCAAATTATGATCTATTTTAA
22588720 ATGGTCACTC
Statistics
Matches: 619, Mismatches: 102, Indels: 49
0.80 0.13 0.06
Matches are distributed among these distances:
170 98 0.16
171 43 0.07
172 272 0.44
173 109 0.18
174 94 0.15
175 3 0.00
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.35
Consensus pattern (172 bp):
TGGATGGCTTTCTCTTCATGTTTTCCTGATGCAAACATCAAATTATGATCTATTTTAACCAAAAA
TGTAAAAGAAATTCAATTCAAAATCATTTTAAAAGTTATAAATCCACTTAAAGCAAGTAACAAGG
CTTTAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAA
Done.