Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41236440
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2030548 characters in sequence are not A, C, G, or T
File 60 of 106
Found at i:22588444 original size:344 final size:342
Alignment explanation
Indices: 22587802--22588710 Score: 1026
Period size: 344 Copynumber: 2.6 Consensus size: 342
22587792 TTCCTATCAG
* * *
22587802 TGGATGGCTTTCGCTTCACATTTCTTGATG-AAACCATCAAATTATGATCTATTTGAACCAAAAA
1 TGGATGGCTTTTGCTTCACATTTATTGATGCAAA-CATCAAATTATGATCTATTTTAACC-AAAA
* * * *
22587866 TGTAAAAAAAATTCAATTCAAAATTATTTAAAAAGGTATAAATCCACTTAA-AGCAAATAACTAG
64 TGTAAAAAAAATTCAATTCAAAATCATTTATAAAGTTATAAATCCACTTAAGAG--AATAACAAG
* * ** * *
22587930 GCGTATGAAGGC-ATGAGTGCCTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCTCTTCATG
127 GC-TTTCAAAACTATGAGTGACTATAAATAGACTTTTCTTGTCAATGAATGGCTTTCTCTTCATG
* * * * *
22587994 TTTTCCTATGCAAACATCAAATTATGATATTTTTTAACTAAAAATGTAAAAGAAATTCAATTTAA
191 TTTTCCAATGCAAACATCAAATTATGATATATTTGAACCAAAAATGTAAAAGAAATTCAATTCAA
* *** * * * *
22588059 AATCATTTTAAAAGTTATAAATCCACTTAAAGTGAGTAACAAGGC-TTTCGAAGGTATGAGTTAC
256 AATCATTTAAAAAGTTATAAATCCACTTAAACCAAGTAACAAGGCATAT-AAAGGCATGAGTGAC
** *
22588123 TATACCTGGACTTCTCTTGTCAA
320 TATAAATGAACTTCTCTTGTCAA
* * * * *
22588146 TGGATGGCTTTTTCTTCACATTTTTTGATGCAAACAACAAGTTATGATCTATTTTAACTAAAACT
1 TGGATGGCTTTTGCTTCACATTTATTGATGCAAACATCAAATTATGATCTATTTTAACCAAAA-T
* *
22588211 GAAAAAAAAATT-AATTGAAAATCATTTATAAAGTTATAAATCCACTTAAGAGAATAACAAGGCT
65 GTAAAAAAAATTCAATTCAAAATCATTTATAAAGTTATAAATCCACTTAAGAGAATAACAAGGCT
* *
22588275 TTCAAAACTATGAGTGACTATAATTAGACTTTTCTTGTCAATGAATGGCTTTCGCTTCATGTTTT
130 TTCAAAACTATGAGTGACTATAAATAGACTTTTCTTGTCAATGAATGGCTTTCTCTTCATGTTTT
* *
22588340 CCAATGGAAACATCAAATTATGATCTATTTGAACCAAAAATGTAAAAAAAGAAA-TCAATTCAAA
195 CCAATGCAAACATCAAATTATGATATATTTGAACCAAAAATGT---AAAAGAAATTCAATTCAAA
22588404 ATCATTTAAAAAGTTATAAATCCACTTAAACCAAGTAACAAGGCATATAAAGGCATGAGTGACTA
257 ATCATTTAAAAAGTTATAAATCCACTTAAACCAAGTAACAAGGCATATAAAGGCATGAGTGACTA
*
22588469 TAAATGAACTTTTCTTGTCAA
322 TAAATGAACTTCTCTTGTCAA
* * ** * * * ** *
22588490 TAGTTGGCTTTTGCTTCATGTTTACTAAGGCAAACATCAAATTACAATCTGTTTTAACCAAGAAT
1 TGGATGGCTTTTGCTTCACATTTATTGATGCAAACATCAAATTATGATCTATTTTAACCAA-AAT
* * * * * * *
22588555 GTAAAAGAAATTCAATTTAAAATCATTT-TAAAAGTTATAAATCAACTTAAAGTGAGTAATAAGA
65 GTAAAAAAAATTCAATTCAAAATCATTTAT-AAAGTTATAAATCCACTT-AAGAGAATAACAAGG
* ** * * *
22588619 CTTTTAAAGA-TATGAGTGAGAATAAATAGACTTTTTTTTGTCAATGTATGGCTTTTTCTTCATG
128 CTTTCAAA-ACTATGAGTGACTATAAATAGAC-TTTTCTTGTCAATGAATGGCTTTCTCTTCATG
*
22588683 -TTTCTCGATGCAAACATCAAATTATGAT
191 TTTTC-CAATGCAAACATCAAATTATGAT
22588711 TTGTTTTAAA
Statistics
Matches: 477, Mismatches: 73, Indels: 27
0.83 0.13 0.05
Matches are distributed among these distances:
341 5 0.01
342 99 0.21
343 37 0.08
344 200 0.42
345 46 0.10
346 40 0.08
347 50 0.10
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.34
Consensus pattern (342 bp):
TGGATGGCTTTTGCTTCACATTTATTGATGCAAACATCAAATTATGATCTATTTTAACCAAAATG
TAAAAAAAATTCAATTCAAAATCATTTATAAAGTTATAAATCCACTTAAGAGAATAACAAGGCTT
TCAAAACTATGAGTGACTATAAATAGACTTTTCTTGTCAATGAATGGCTTTCTCTTCATGTTTTC
CAATGCAAACATCAAATTATGATATATTTGAACCAAAAATGTAAAAGAAATTCAATTCAAAATCA
TTTAAAAAGTTATAAATCCACTTAAACCAAGTAACAAGGCATATAAAGGCATGAGTGACTATAAA
TGAACTTCTCTTGTCAA
Found at i:22593889 original size:171 final size:172
Alignment explanation
Indices: 22589433--22593900 Score: 3519
Period size: 171 Copynumber: 26.1 Consensus size: 172
22589423 AGGTCTCACA
* * *
22589433 ATAACTTTTTAAATGATTTTAAATTGAATTTTGTTTATATTTTTTGTTAAAACAGATCATAATTT
1 ATAACTTTTTAAATGATTTTAAATTGAATTTTTTTTACATTTTTGGTTAAAACAGATCATAATTT
* * * * * *
22589498 GATATTT-CA-TTGGAAAACATGAAGCAAAAGTCAACCATTAATAAGAAAAGTCAATTTATAGTC
66 GATGTTTGCATTTGG-AAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTC
* * ** * * *** *
22589561 ATTCATGGCTTGGAAAGGCTTTTTACTTTTTTTAAGTGGTTTT
130 ACTCATGCCTTCAAAAGCCTTGTTACTCACTTTAAGTGGATTT
* * * ** *
22589604 AAAACTTCTTAAATGATTTTGAATTGAATTTTTTTTACATTTTCAGTTAAAAGAGATCATAATTT
1 ATAACTTTTTAAATGATTTTAAATTGAATTTTTTTTACATTTTTGGTTAAAACAGATCATAATTT
* ** * * * * *
22589669 GTTGTTTGCATCGGGAAAAATGAAGCAAAAACCTTCCATTGACAAGAAAAGTCCATTTATTGTCA
66 GATGTTTGCATTTGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCA
* * * *
22589734 CTCATGTCTTCAAGAGCCTTATTACTCGCTTTAAGT-GATTT
131 CTCATGCCTTCAAAAGCCTTGTTACTCACTTTAAGTGGATTT
* * * * * * *
22589775 CAAAACTTTATAAATGATTTTAGATTGAATTTCTTAT-CATTTTTAGTTGAAACAGATCATAATT
1 -ATAACTTTTTAAATGATTTTAAATTGAATTTTTTTTACATTTTTGGTTAAAACAGATCATAATT
* * * * *
22589839 TGATGTTTGCATTGGGAGACGTGAAGCGAAAGCCATCCATTGACAAAAAAAAGTCTATTTATAGG
65 TGATGTTTGCATTTGGAAACATGAAGCAAAAGCCATCCATTGAC-AAGAAAAGTCTATTTATA-G
* * * ** * *
22589904 TGCA--CATACCTAT-AAAAGCCTTCTTAATCGGTTGAAGTGGTTTT
128 T-CACTCATGCCT-TCAAAAGCCTTGTTACTCACTTTAAGTGGATTT
* * * * * * *
22589948 AGAACTTTATAAATGATTTTGAATTAAATTTTTTTTACATTTTTAGTTAAAAAAGATTATAATTT
1 ATAACTTTTTAAATGATTTTAAATTGAATTTTTTTTACATTTTTGGTTAAAACAGATCATAATTT
* * ** * *
22590013 GATGTTTGCATTAGGAGACGA-GAAGTGAAAGCCGTCCATTGACAAGAAAAGTCTACTTATA-TG
66 GATGTTTGCATTTGGAAAC-ATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGT-
* * * *
22590076 CACTCGTACCTTTAAAAGCCTTGTTACTCGCTTTAAGT-GATTTT
129 CACTCATGCCTTCAAAAGCCTTGTTACTCACTTTAAGTGGA-TTT
* * * * * *
22590120 AGAACTTTTTAAATGATTTTGAATT-AGTTTTTTTTTACATTTTTAGTTAAAAAAGATAATAATT
1 ATAACTTTTTAAATGATTTTAAATTGA-ATTTTTTTTACATTTTTGGTTAAAACAGATCATAATT
* * * * *
22590184 TGATGTTTGCA-TCGG-AACATGTGAAGAAAAAGTCATCCATTGACAAGAAAAGTCCAGTTATAG
65 TGATGTTTGCATTTGGAAACA--TGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTATTTATAG
* * ** *
22590247 TCACTCATGCCTTCGAAAGCCTTATTGTTCTCTTTAAGTGGATTT
128 TCACTCATGCCTTCAAAAGCCTTGTTACTCACTTTAAGTGGATTT
* * * *
22590292 ATAACTTTATAAATGATTTTAAATTGAA-TTTTTTT-CATTTTTGGTTAAAGCATATCATCATTT
1 ATAACTTTTTAAATGATTTTAAATTGAATTTTTTTTACATTTTTGGTTAAAACAGATCATAATTT
*** *
22590355 GATGTTTGCATCAAGAAACATGAAACAAAAGCCATCCATTGACAAGAAAAGTC-ATTTATAGTCA
66 GATGTTTGCATTTGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCA
* * * *
22590419 CTAATGCCTTCAAAAGCCTAT-TTACTCGC-TTCAGATGGTTTT
131 CTCATGCCTTCAAAAGCCT-TGTTACTCACTTTAAG-TGGATTT
* * * * * * *
22590461 ATAA-TCTTATAAATGATTTCAATTTGAATTTGTTTT-CATATTTAGTTAAAAC----CATAGTT
1 ATAACT-TTTTAAATGATTTTAAATTGAATTTTTTTTACATTTTTGGTTAAAACAGATCATAATT
* * * * * * *
22590520 TGTTGTTTGCA-TCGAGAAACATGAAG-AAAATGCCATCCATTGATAAGGAAAGTCTAGTCATAA
65 TGATGTTTGCATTTG-GAAACATGAAGCAAAA-GCCATCCATTGACAAGAAAAGTCTATTTATAG
* * * * **
22590583 TAATTCATGCCTTCAAAACCCTTGTTACTCCCTTTAAAAGGATTT
128 TCACTCATGCCTTCAAAAGCCTTGTTACTCACTTTAAGTGGATTT
* * * ** *
22590628 CTAACTCTTTAGATGTTATTTT-AATTGAATTTCGTTTACATTTTTGGTTAAAACATATCATAAT
1 ATAACTTTTTAAATG--ATTTTAAATTGAATTTTTTTTACATTTTTGGTTAAAACAGATCATAAT
* * * * * *
22590692 TTGATATTTGCA-TTGAGAAACATGAAACCAAAGCCATCCATTAAC-AGAAAAAGTCTACTTACA
64 TTGATGTTTGCATTTG-GAAACATGAAGCAAAAGCCATCCATTGACAAG-AAAAGTCTATTTATA
* * **
22590755 GTCACTCATGCCTTCATACGCCTTGTTACTTGCTTTAAGTGGATTT
127 GTCACTCATGCCTTCAAAAGCCTTGTTACTCACTTTAAGTGGATTT
* * * * *
22590801 ATAACTTCTTAAATGATTTTAAATTGAATTTTTTTTTTTTACATTTTTAGTTAACACATAGCATA
1 ATAACTTTTTAAATGATTTTAAATTGAA----TTTTTTTTACATTTTTGGTTAAAACAGATCATA
* * * * * * *
22590866 ATTTGATGTTTGCATTGGGAAACATAAAGCGAAAGCTGA-CCATTAACAAGGAAAGTCCATTTAT
62 ATTTGATGTTTGCATTTGGAAACATGAAGCAAAAGC-CATCCATTGACAAGAAAAGTCTATTTAT
* * * * *
22590930 AGTCACTTATGGCTTGGAAAA-CCTTGTTATTCACTTTAAGTGGTTTT
126 AGTCACTCATGCCTT-CAAAAGCCTTGTTACTCACTTTAAGTGGATTT
** *
22590977 ATAACTTTTTAAATGATTTTGGATTGAATTTTTTTTACATTTTTGGTTAAAAAAGATCATAATTT
1 ATAACTTTTTAAATGATTTTAAATTGAATTTTTTTTACATTTTTGGTTAAAACAGATCATAATTT
* * * * * * * *
22591042 GATTGTTTGCATCAT-GAAACGTGAAGCGAAAA-CCTTCCGTTGATAAGAAAAGTCCAGTTACAG
66 GA-TGTTTGCAT-TTGGAAACATGAAGC-AAAAGCCATCCATTGACAAGAAAAGTCTATTTATAG
* * * * *
22591105 TCACTAACGCCTTCAAAAGCCTTATTATTCCCTTTAAGTGGATTT
128 TCACTCATGCCTTCAAAAGCCTTGTTACTCACTTTAAGTGGATTT
* * *
22591150 ATAACTTTATAAATGATTTTAAATTG-A-TTTTTTT-CATTTTTGGTTAAAGCAGATCATAACTT
1 ATAACTTTTTAAATGATTTTAAATTGAATTTTTTTTACATTTTTGGTTAAAACAGATCATAATTT
* * * * * * * *
22591212 GTTGTTTGCA-TCGGTAAACGTGAAGAAAAAGCCATCCATTGACAAGAAAAGTCCAATTATTGTA
66 GATGTTTGCATTTGG-AAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTC
* * *
22591276 ACTCATGCC-TCTGAAAGTCTTGTTACTCACTTTAAGTGGATTC
130 ACTCATGCCTTC-AAAAGCCTTGTTACTCACTTTAAGTGGATTT
* * * * *
22591319 CTAACTCTTTAAATGATTTTAACTTGAATTTTTTTTACCATTTTTAGTTAAAATAGATCATAATT
1 ATAACTTTTTAAATGATTTTAAATTGAATTTTTTTTA-CATTTTTGGTTAAAACAGATCATAATT
* * *
22591384 TAATGTTTGCATTGGGAAACATGAAACAAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTC
65 TGATGTTTGCATTTGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTC
* * * * * * *
22591449 ACTAATGCGTTCAAAATCATAT-TTACTCAC-TTCAGACGGTTTT
130 ACTCATGCCTTCAAAAGCCT-TGTTACTCACTTTAAG-TGGATTT
* * ** * * *
22591492 ATAA-TCTTATAAATGATTTCAGCTTGAA---TTTTTCCTTTTTTGGTTAAAACAGATCATAGTT
1 ATAACT-TTTTAAATGATTTTAAATTGAATTTTTTTTACATTTTTGGTTAAAACAGATCATAATT
* ** * * * * *
22591553 TGTTGTTTGCATCGGGAAACGTGAAGCGAAAA-TCATCTATTGATAAGAAAAGTCCATTTATAGT
65 TGATGTTTGCATTTGGAAACATGAAGC-AAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGT
* ** ** * * * *
22591617 CACTCAAGTCC-TCAAAAGTGTAATTAGTCACTTTAAATAGTTTT
129 CACTCATG-CCTTCAAAAGCCTTGTTACTCACTTTAAGTGGATTT
* * ** *
22591661 ATAA-TTGTATAAATGATTTTCAAATT-AA-ATTTTTCCCTTTTTTGGTTAAAACAGATCATAAT
1 ATAACTT-TTTAAATGATTTT-AAATTGAATTTTTTTTACATTTTTGGTTAAAACAGATCATAAT
* * * * *
22591723 TTGATGTTTGCATTAGGAAACGTGAA-CAAAAAGCCATACATTGACACGAAAAGTTTATTTATAG
64 TTGATGTTTGCATTTGGAAACATGAAGC-AAAAGCCATCCATTGACAAGAAAAGTCTATTTATAG
* ** * *
22591787 TTACTCATGCCTTTGAAAGCCTTATTACTTACTTTAAGTGGATTT
128 TCACTCATGCCTTCAAAAGCCTTGTTACTCACTTTAAGTGGATTT
* * *
22591832 ATAAC-TTTTAAATGATTTTAAATTGAATTTCTTTAACATTTTTGGTTAAAACAGATCGTAATTT
1 ATAACTTTTTAAATGATTTTAAATTGAATTTTTTTTACATTTTTGGTTAAAACAGATCATAATTT
* **
22591896 GATCTTTGCA-TTGAGAAACATGAAGTGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTC
66 GATGTTTGCATTTG-GAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTC
* * * *
22591960 ACTCATGTCC-TCGAAAGCTTTGCTAGTCACTTTAAGTGG-TTT
130 ACTCATG-CCTTCAAAAGCCTTGTTACTCACTTTAAGTGGATTT
* * * * * *
22592002 CATAA-TCGTATAAAGGATTTGAAAATTGAA-TTTTTCT-C-TTGTTTGGTTAAAACAGATCAAA
1 -ATAACT-TTTTAAATGATTT-TAAATTGAATTTTTTTTACATT-TTTGGTTAAAACAGATCATA
* * * * * * * *
22592063 ATTTGATGTTTTCA-TTGAGAAACGTGAAGAAAAAGTCAACTATTGACAAGAAAAGTCTAGTTAC
62 ATTTGATGTTTGCATTTG-GAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTATTTAT
* * *
22592127 AGTAACTCATGCCTTCGAAAGTCTTGTTACTCACTTTAAGTGGATTT
126 AGTCACTCATGCCTTCAAAAGCCTTGTTACTCACTTTAAGTGGATTT
* * * * * ** * *
22592174 CTAACTCTTTAAATGATTTCAAATTGAATTTCTTTTACATTGTTATTTAAAACATATCATAGTTT
1 ATAACTTTTTAAATGATTTTAAATTGAATTTTTTTTACATTTTTGGTTAAAACAGATCATAATTT
* * *
22592239 GATGTTTTCA-TTGAGAAACGTGATA-CAAAAGCCATCCATTGACAA-AAAAGTCTATTTATGGT
66 GATGTTTGCATTTG-GAAACATGA-AGCAAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGT
* * *
22592301 CACTAATGCCTTCAAAAGCCTAT-TTACTCACTTCATA-TGGTTTT
129 CACTCATGCCTTCAAAAGCCT-TGTTACTCACTTTA-AGTGGATTT
* * ** * * * ** *
22592345 ATAA-TCTTGTAAATGATTTCATTTTTAATTTGTTTT-CATTTTTGGCTAAAACTTATCATAGTT
1 ATAACT-TTTTAAATGATTTTAAATTGAATTTTTTTTACATTTTTGGTTAAAACAGATCATAATT
* * ** * * * * * * *
22592408 TGTTGTTTTCATCGGGAAATATGAAGTGAAAA-TCTTCCATTGAGAAGAAAGGTCCATTTATAGT
65 TGATGTTTGCATTTGGAAACATGAAG-CAAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGT
* * * * * * * *
22592472 CACTCATACCCTCGAAAGCCTAGTTACAT-GCTTTAAATAGTTTT
129 CACTCATGCCTTCAAAAGCCTTGTTAC-TCACTTTAAGTGGATTT
* * * * * * *
22592516 ATAA-TCATATAAATGATTTGAAAATTGAA-TTTTTCT-CTTTTTTGGTTAAAACAAATCATTAT
1 ATAACT-TTTTAAATGATTT-TAAATTGAATTTTTTTTACATTTTTGGTTAAAACAGATCATAAT
* ** * ** * * * *
22592578 TTGATGTTTTCATCAGGAAACATTAAATAAAAACCATACATAGACAAGAAAAATCTATTTATAGT
64 TTGATGTTTGCATTTGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGT
* * **
22592643 CACTCATGTCTTCAAAAGCCTTATTACTTGCTTTAAGTGGATTT
129 CACTCATGCCTTCAAAAGCCTTGTTACTCACTTTAAGTGGATTT
* *
22592687 ATAACTTTTTACATGATTTTAAATT-AATTTTTTTTTACATTTTTGGTTAAAACATATCATAATT
1 ATAACTTTTTAAATGATTTTAAATTGAA-TTTTTTTTACATTTTTGGTTAAAACAGATCATAATT
* * * * * * *
22592751 TGATGTTTGCAATAGGAAACATGAAGCGAAAGCTAACCATTGACAAGAAAAGTCCATTTAAAGTC
65 TGATGTTTGCATTTGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTC
* * * * * * *
22592816 ACTAATGGCTTGAAAAGACTTGTTTCTCGCTTTAAGTGGTTTT
130 ACTCATGCCTTCAAAAGCCTTGTTACTCACTTTAAGTGGATTT
* *
22592859 AGAACTTTTTAAATGATTTTGAATT-AGATTTTTTTTACATTTTTGGTT-AAACAAGATCATAAT
1 ATAACTTTTTAAATGATTTTAAATTGA-ATTTTTTTTACATTTTTGGTTAAAAC-AGATCATAAT
* * * * * * *
22592922 TTGATGTTTCCA-TCGAGAAACGTGAAGCGAAAA-CCTTCTATTGACGAA-AAAAGTATAGTTAT
64 TTGATGTTTGCATTTG-GAAACATGAAGC-AAAAGCCATCCATTGAC-AAGAAAAGTCTATTTAT
* * * * **
22592984 AGTCACTCATACCTTCAAAAACCTTATTATTCTTTTTAAGTGGATTT
126 AGTCACTCATGCCTTCAAAAGCCTTGTTACTCACTTTAAGTGGATTT
* * * * *
22593031 ATAACATTATAAATGATTTTAAATTG-A-TTTTTTT--ATTTTTAGTTAAAGCAGATCATAACTT
1 ATAACTTTTTAAATGATTTTAAATTGAATTTTTTTTACATTTTTGGTTAAAACAGATCATAATTT
* * * * * ** * *
22593092 GTTGTTTGCA--TCGAAAAACGTAAGAAAAAATCATCCATTGACAAGAAAAGTCCA-ATACTAGT
66 GATGTTTGCATTTGGAAACATG-AAGCAAAAGCCATCCATTGACAAGAAAAGTCTATTTA-TAGT
* * *
22593154 AACTTATGCCTTCGAAAGCCTTGTTACTCACTTTAAGTGGATTT
129 CACTCATGCCTTCAAAAGCCTTGTTACTCACTTTAAGTGGATTT
* * * * * *
22593198 CTAACTCTTTAATAATTTGAATTTGAATTTGAATTTATTTT-CATTTTTGGTGAAAACAGATCAT
1 ATAACT-TTT--TAA-ATG-ATTTTAAATTGAATTTTTTTTACATTTTTGGTTAAAACAGATCAT
* * * *** ** * * *
22593262 AGTTTGTTGTTTACATTAAAAAATGTGAAGCGAAAGCCATCCATTGATAAAAAAAAGTCTATTTA
61 AATTTGATGTTTGCATTTGGAAACATGAAGCAAAAGCCATCCATTGA-CAAGAAAAGTCTATTTA
* * * * * *
22593327 TTGTCACTAATGCCTTCAAAAGCCTAT-CTAGTCACTTT-GGATGGTTTT
125 TAGTCACTCATGCCTTCAAAAGCCT-TGTTACTCACTTTAAG-TGGATTT
* * * * * * * *
22593375 ATAA-TCTTATAAATAATTTCAATTTGAATTTTTTCT-CATTGTTGGTTAAAAAAGATCATAGTT
1 ATAACT-TTTTAAATGATTTTAAATTGAATTTTTTTTACATTTTTGGTTAAAACAGATCATAATT
* * * * * * *
22593438 TGTTGTTTGCATTGGGAAACGTGAAACGAAAA-TCATCCATTAACAAGAAAAGTCCATTTATAGT
65 TGATGTTTGCATTTGGAAACATGAAGC-AAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGT
* * * *
22593502 CACTCATGCCTTCAAAAGCCTAGTTAGTCACTTTAAATGGTTTT
129 CACTCATGCCTTCAAAAGCCTTGTTACTCACTTTAAGTGGATTT
* * * * *
22593546 ATAA-TCGTATAAATGATTTTAAAATTGAA-TTTTTCTAC-TTTTTAGTTAAAACATATCATAAT
1 ATAACT-TTTTAAATGATTTT-AAATTGAATTTTTTTTACATTTTTGGTTAAAACAGATCATAAT
* * * * * * *
22593608 TTGATCTTTGCATCAT-GAAACGTGAAGAAAAAGCCATACATTAACAAGAAAATTCTATTTATAG
64 TTGATGTTTGCAT-TTGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTATTTATAG
* * * * *
22593672 TCACTCATGACTTCGAAAGCCTTATTACTCGCTTTACGTGGATTT
128 TCACTCATGCCTTCAAAAGCCTTGTTACTCACTTTAAGTGGATTT
** * *
22593717 ATAACTTTTTACTTGATTTTAAATTGAATTTTTTTTACATTTTTGGTTAAAACAAAT-GTAATTT
1 ATAACTTTTTAAATGATTTTAAATTGAATTTTTTTTACATTTTTGGTTAAAACAGATCATAATTT
* *
22593781 GATGTTTACATTTGGAAACATGAAGCAAAAGCCATCCATTAACAAGAAAAGTCTATTTATAGTCA
66 GATGTTTGCATTTGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCA
* * ** * *
22593846 CTCATGCCTTCATACGCCTTGTTACTTGCTTTAAATAGATTT
131 CTCATGCCTTCAAAAGCCTTGTTACTCACTTTAAGTGGATTT
*
22593888 ATAACATTTTAAA
1 ATAACTTTTTAAA
22593901 ATAGATCATA
Statistics
Matches: 3448, Mismatches: 699, Indels: 300
0.78 0.16 0.07
Matches are distributed among these distances:
165 4 0.00
166 60 0.02
167 106 0.03
168 59 0.02
169 307 0.09
170 254 0.07
171 1095 0.32
172 881 0.26
173 410 0.12
174 23 0.01
175 31 0.01
176 155 0.04
177 60 0.02
178 3 0.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (172 bp):
ATAACTTTTTAAATGATTTTAAATTGAATTTTTTTTACATTTTTGGTTAAAACAGATCATAATTT
GATGTTTGCATTTGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCA
CTCATGCCTTCAAAAGCCTTGTTACTCACTTTAAGTGGATTT
Found at i:22594022 original size:134 final size:134
Alignment explanation
Indices: 22593782--22594026 Score: 366
Period size: 134 Copynumber: 1.8 Consensus size: 134
22593772 ATGTAATTTG
* * *
22593782 ATGTTTACATTTGGAAACATGAAGCAAAAGCCATCCATTAACAAGAAAAGTCTATTTATAGTCAC
1 ATGTTTACATTAGGAAACATGAAGCAAAAGCCAACCATTAACAAGAAAAGTCCATTTATAGTCAC
* *
22593847 TCATGCCTTCATACGCCTTGTTACTTGCTTTAAATAGATTTATAACATTTTAAAATAGATCATAA
66 TCATGCCTTCAAAAGCCTTGTTACTTGCTTTAAATAGATTTATAACATTTTAAAATAGATCATAA
22593912 TCAA
131 TCAA
** **
22593916 ATGTTTACATTAGGAAATGTGAAGTGAAAGCCAACCATTAACAAGAAAAGTCCATTTATAGTCAC
1 ATGTTTACATTAGGAAACATGAAGCAAAAGCCAACCATTAACAAGAAAAGTCCATTTATAGTCAC
* * *
22593981 TCATGCCTTCAAAAGCCTTGTTA-TTCTCTTTAAGTGGATTTATAAC
66 TCATGCCTTCAAAAGCCTTGTTACTT-GCTTTAAATAGATTTATAAC
22594027 TTTACAAATG
Statistics
Matches: 98, Mismatches: 12, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
133 2 0.02
134 96 0.98
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (134 bp):
ATGTTTACATTAGGAAACATGAAGCAAAAGCCAACCATTAACAAGAAAAGTCCATTTATAGTCAC
TCATGCCTTCAAAAGCCTTGTTACTTGCTTTAAATAGATTTATAACATTTTAAAATAGATCATAA
TCAA
Found at i:22594333 original size:161 final size:160
Alignment explanation
Indices: 22594039--22594337 Score: 345
Period size: 161 Copynumber: 1.9 Consensus size: 160
22594029 TACAAATGAT
* *
22594039 TTTAAATTGATTTGTTTTTAATTTTTGGTTAAAGCAGATCATAACTTGTGGTTTGCATCAAAAAA
1 TTTAAATTGATTTGCTTTTAATTTTTGGTTAAAACAGATCATAACTTGTGGTTTGCATCAAAAAA
* * * * * *
22594104 CGTGAAGAAAAAGCCATTCATTGACAAGAAAAGTCCAATTATAGTAACTCATTCTTTCGAAAGCC
66 CATGAAGAAAAAGCCATCCACTAACAAGAAAAGTCCAATTATAGTAACTCATGCCTTCGAAAGCC
22594169 TTGTTACTCACTTTAAGTGGATTTCTAACC
131 TTGTTACTCACTTTAAGTGGATTTCTAACC
* * ***
22594199 TTTAAATTGAATTT-CTTTTACATTTTTGGTTAAAATAGATCATAATTTGAT-GTTTGCATCGGG
1 TTTAAATTG-ATTTGCTTTTA-ATTTTTGGTTAAAACAGATCATAACTTG-TGGTTTGCATCAAA
** * * * *
22594262 AAACATGAA-ACAAAAGCCATCCACTAATGAGAAAAGTCTATTTGTAGTCACTCATGCCTTC-AT
63 AAACATGAAGA-AAAAGCCATCCACTAACAAGAAAAGTCCAATTATAGTAACTCATGCCTTCGA-
*
22594325 ACGCCTTGTTACT
126 AAGCCTTGTTACT
22594338 TGCTTTATGT
Statistics
Matches: 114, Mismatches: 20, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
160 16 0.14
161 97 0.85
162 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.36
Consensus pattern (160 bp):
TTTAAATTGATTTGCTTTTAATTTTTGGTTAAAACAGATCATAACTTGTGGTTTGCATCAAAAAA
CATGAAGAAAAAGCCATCCACTAACAAGAAAAGTCCAATTATAGTAACTCATGCCTTCGAAAGCC
TTGTTACTCACTTTAAGTGGATTTCTAACC
Found at i:22605583 original size:171 final size:169
Alignment explanation
Indices: 22604725--22610970 Score: 4247
Period size: 171 Copynumber: 36.6 Consensus size: 169
22604715 AGTCGTGACA
* * * * * *
22604725 CTTTAAGTGGATTTATAACTTTTTAAATGAGTTTAAATAGAAATTGTTTTACAATTTTGGCTAAA
1 CTTTAAGTGGATTTATAAC-TTATAAATGATTTTAAATTG-AATT-TTTTTCATTTTTGGTTAAA
** * * * * *
22604790 ACAGATGGTAATTTGATGTTTGCATCGGGAAACATGAAGCGAAAACCAACCATTAAGAAGAAAAG
63 ACAGATCATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAACCATCCATTGACAAGAAAAG
* * *
22604855 TCCATTTATAGTCACTCATGGCTTGGAAAGTCTTGTTACTCG
128 TCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCG
* * * *
22604897 CTTTAAGT-GATTTTAGAACCTTTTAAATGATTTTGAATTGGATTTTTTTTACATTTTTGGTTAA
1 CTTTAAGTGGA-TTTATAA-CTTATAAATGATTTTAAATT-GAATTTTTTT-CATTTTTGGTTAA
* ** * ** ** * * *
22604961 AAAAGATTGTAATTTGATGTTTGCATCGATAAACATGAAGTTAAAACCTTCCCTTCACGAGAAAA
62 AACAGATCATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAACCATCCATT-----G-ACA
* * * * * *
22605026 AGAAAAAACTCTAGTTATAATCACTCATGCCTTTC-AAAGCCTTGTTATTCT
121 AG--AAAAGTCCATTTATAGTCACTCATGCC-TTCGAAAGCCTTGTTACTCG
*
22605077 CTTTAAGTCGATTTATAACTTTATAAATGATTTTAAATTGAATTTTTTTTTCATTTTTGGTTAAA
1 CTTTAAGTGGATTTATAAC-TTATAAATGATTTTAAATTGAA--TTTTTTTCATTTTTGGTTAAA
** * * * ** * *
22605142 GTAAATCATAACTTGTTGTTTGCATAT-AAAAACGTGAAG-AAAAAGCCATCCATTGACAAAAAA
63 ACAGATCATAATTTGATGTTTGCAT-TGGGAAACATGAAGCAAAAA-CCATCCATTGACAAGAAA
* * * *
22605205 AGTACAATTATAGTAACTCATGCCTTCAAAAGCCTTGTTACTCG
126 AGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCG
* * * ** * * * *
22605249 CTTTAAGTAGATTTCTAACTCTTTAAACAATTTTAACTTGAATTTCTTTTATATTTTTAGTGAAA
1 CTTTAAGTGGATTTATAACT-TATAAATGATTTTAAATTGAATTT-TTTT-CATTTTTGGTTAAA
* * * * * * * *
22605314 ACAGATCATAATTTAATGTTTACATTAGAAAATATGAAACAAAAGCCATCAATTGACAAGAAAAG
63 ACAGATCATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAACCATCCATTGACAAGAAAAG
* * * *
22605379 TCTATTTATAGTCACTAATACCTTCAAAAGCCTAT-TTACTCG
128 TCCATTTATAGTCACTCATGCCTTCGAAAGCCT-TGTTACTCG
* * * * * * *
22605421 CCTCAAATGGTTTTATAATCTTATAAATGATTTCAATTTGAATTTGTTTTCTTTTTTGGTTAAAA
1 CTTTAAGTGGATTTATAA-CTTATAAATGATTTTAAATTGAATTT-TTTTCATTTTTGGTTAAAA
* * * * *
22605486 CAAATCATAGTTTGTTGTTTGCATTGGGAAACATGAAGCGAAAACCATCCATTGACAA-AACAAA
64 CAGATCATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAACCATCCATTGACAAGAA-AAG
** * *
22605550 TCCATTTATAGTCACTCATGCCTTCGAAAGCCTACTTAGTCA
128 TCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCG
* * ** *
22605592 CTTTAAATGGTTTTATAATCTTATAAATGATTTTAAAATTGAATTTTTCCCTTTTTTGGTTAAAA
1 CTTTAAGTGGATTTATAA-CTTATAAATGATTTT-AAATTGAATTTTTTTCATTTTTGGTTAAAA
* * * * ** * * ** *
22605657 CATATCATAATTTCATGTTTTCGTCAGGAAACTTGAAG-AAAAAGGCAAACATTGACAAGAAGAG
64 CAGATCATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAA-CCATCCATTGACAAGAAAAG
* * * *
22605721 TCTATTTATAGTCACTTATGCCTTCAAAAGCCTTATTACTCG
128 TCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCG
* * *
22605763 CTTTAAGTGGATTTATAACTTTTTGAATGATTTTAAATTGAATTATTTTTACAATTTTGGTTAAA
1 CTTTAAGTGGATTTATAAC-TTATAAATGATTTTAAATTGAATT-TTTTT-CATTTTTGGTTAAA
* * * * * *
22605828 ACATATCATACTTTGAT-TTTGCATCGGGAAACGTGAAGCAAAAGCCAAT-CATTAACAAGAAAA
63 ACAGATCATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAACC-ATCCATTGACAAGAAAA
* * * *
22605891 GTCCATTTATAGTCACTTATGGCTTGGAAAGCCTTGATACTCG
127 GTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCG
* * * * * * * * ***
22605934 CTTTAAATGGTTTTACAGCTTTTAAAATTATTTTGAATAGAATTTTTTTTTTACATTTTCAATTA
1 CTTTAAGTGGATTTATAACTTAT-AAATGATTTTAAATTGAA---TTTTTTT-CATTTTTGGTTA
* * * *
22605999 AAAAAGATCATAATTTGATGTTTGCATT-GGAAA-ATGAAAAGCAAAAACCTTTCGTTGACAAGA
61 AAACAGATCATAATTTGATGTTTGCATTGGGAAACATG--AAGCAAAAACCATCCATTGACAAGA
* * * *
22606062 AAAGTCCAGTTATAGTCACTCATGCCTTCAAAAGCCTTGTTATTCT
124 AAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCG
* * * *
22606108 TTTTAGGTGGATTTATAACTTTATAAATGATTTTAAATTGAATTTGTCTTCATTTTTGGCTAAAA
1 CTTTAAGTGGATTTATAAC-TTATAAATGATTTTAAATTGAATTT-TTTTCATTTTTGGTTAAAA
* * * * * * * *
22606173 CAGATCATAGTTTGTTGTTTACATCGAGAAACATGAAGCGAGAACTATCCATTGACAAGAAAAGT
64 CAGATCATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAACCATCCATTGACAAGAAAAGT
* * *
22606238 CCATTTATAGTCACTCATGCCCTCGAAAGCCTAGTTAGTCG
129 CCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCG
* * * * * * *
22606279 CTTTAAATAGTTTTATAATCGTATAAATGATTTAAAAATTGAATTTTTCT-ATTTTTCGATTAAA
1 CTTTAAGTGGATTTATAA-CTTATAAATGATTT-TAAATTGAATTTTTTTCATTTTT-GGTTAAA
* * * * * *
22606343 ATAGATCATGATTTGATGTTTTCATCGGGACACATGAAG-AAAAAGCCATACATTGACAAGAAAA
63 ACAGATCATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAA-CCATCCATTGACAAGAAAA
* * * * *
22606407 GTCTATTTATAGTAACTCATGTCTTTGAAAGCCTTATTACTCG
127 GTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCG
* * * *
22606450 CTTTAAGT--CTTT-GAA---AT---TGA-ATT---TT---TTTTTTACATTTTTGGTTAAAACA
1 CTTTAAGTGGATTTATAACTTATAAATGATTTTAAATTGAATTTTTTTCATTTTTGGTTAAAACA
* * * * * * *
22606499 GATCATAATTTGATATTTGCATT-GGAAGCATGAAGCGAAAGCCAACCATTAACAAAAAAAGTCC
66 GATCATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAACCATCCATTGACAAGAAAAGTCC
*
22606563 ATTTATAGTCACTCATAG-CTT-GAAAAACCTTGTTACTCG
131 ATTTATAGTCACTCAT-GCCTTCG-AAAGCCTTGTTACTCG
* * * * ** *
22606602 CTTTAAGT-GATTTTAGAACTTTTTAAATGATTTTGAATTG-GTATTTTTTCACATTTGCCATTA
1 CTTTAAGTGGA-TTTATAAC-TTATAAATGATTTTAAATTGAAT-TTTTTTCATTTTTG--GTTA
* ** * ** * * ***
22606665 CAAA-AGATCATAATTTGATGTTTGCATTGGAAAATGTGAAGCTAAAACGTTTCGTTGGTGA-AA
61 -AAACAGATCATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAACCATCCATTGACAAGAA
* * * * * *
22606728 AAGTCTAGTTA-CGATCACTCATGCCTTCCAAAGCCTTGTTATTCT
125 AAGTCCATTTATAG-TCACTCATGCCTTCGAAAGCCTTGTTACTCG
* *
22606773 CTTTAAGTGGATTTATAACTTTATAAATGATTTTCAATTGAATTTTTTTTCATTTTTGGTTAAAG
1 CTTTAAGTGGATTTATAAC-TTATAAATGATTTTAAATTGAA-TTTTTTTCATTTTTGGTTAAAA
* * * * * * *
22606838 CAGATCATAACTTGATGTTTGCATCT-GAAAACGTAAAGAAAAAATCATACATTGACAAGAAAAG
64 CAGATCATAATTTGATGTTTGCAT-TGGGAAACATGAAGCAAAAACCATCCATTGACAAGAAAAG
* * * * ** *
22606902 TCTA-GTCTAGTAACTCATGCCTTTAAAAGCCTTGTTACTCA
128 TCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCG
* * * * * * *
22606943 CTTTAAATGCATTTCTAACTCTTTAAATGATTTTAACTTGCATTGTTTTTACATTTTTAGTTAAA
1 CTTTAAGTGGATTTATAACT-TATAAATGATTTTAAATTGAATT-TTTTT-CATTTTTGGTTAAA
* * * * * * * *
22607008 ATAGATCATAATTTAATATTTACATTGGGAAACATGAAACAAAAGCCATCAACTGACAAGAAAAG
63 ACAGATCATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAACCATCCATTGACAAGAAAAG
* * * *
22607073 TCCATTTATAGTTACTCATGCCTT-TATATGCCTTGTTACTTG
128 TCCATTTATAGTCACTCATGCCTTCGA-AAGCCTTGTTACTCG
* * * *
22607115 CTTTAAGTGGATTTATAACTTTTTGAATGATTATAAATTGAATTATTTTTTACAGTTTTGGTTAA
1 CTTTAAGTGGATTTATAAC-TTATAAATGATTTTAAATTGAA-T-TTTTTT-CATTTTTGGTTAA
* * ** * * *
22607180 AACATATCATAATTTGATGTTTGCATAGGGAAATTTGATATG--AAAGCCAACCATTAACAAGAA
62 AACAGATCATAATTTGATGTTTGCATTGGGAAACATGA-A-GCAAAAACCATCCATTGACAAGAA
* * *
22607243 AAGTCCATTTATAGTCACTCATGGCTTGGAAAGCCATGTTACTCG
125 AAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCG
* * * * * * *
22607288 CTTTAAGTGGTTTTACAACTTTTAAAATGATTTTGAATAGGATTTTTTCTCTACATTTTTAGTTA
1 CTTTAAGTGGATTTATAACTTAT-AAATGATTTTAAAT-TGAATTTTT-T-T-CATTTTTGGTTA
* ** * * * * *
22607353 AAAAAGATCATAATTTGATGTTTGCATTGGGAAATGTGAAGCAAAACCCTTTCGTTGGCAAGAAA
61 AAACAGATCATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAACCATCCATTGACAAGAAA
* * * * * *
22607418 AGTCTAGTTATAGTCACTTATGGCTTCGAAAGCCTTGTTATTCT
126 AGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCG
* *
22607462 CTTTAGGTGGATTTATAACTTTATATATGATTTTAAATTGAATTTGTTTTTTCATTTTTGGTTAA
1 CTTTAAGTGGATTTATAAC-TTATAAATGATTTTAAATTGAA--T-TTTTTTCATTTTTGGTTAA
* * * * **** ** * *
22607527 AACATATGATAACTTGTTGTTTGCATAAAAAAATGTGAAG-AAAAATTCATCCATTAAC-AGAAA
62 AACAGATCATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAA-CCATCCATTGACAAG-AA
* * * *
22607590 AAATTCAGTTATA-CCAACTCATGCCTTCGAAA-CCTTGTTACTCG
125 AAGTCCATTTATAGTC-ACTCATGCCTTCGAAAGCCTTGTTACTCG
* *
22607634 CTTTAAGTGGATTTATAAC-GACTTAAATGAGTTTAAATTGAATTTCTTTTACATTTTTGGTT-A
1 CTTTAAGTGGATTTATAACTTA--TAAATGATTTTAAATTGAATTT-TTTT-CATTTTTGGTTAA
* * * ** * * *
22607697 AACAAGATGATAAATTGATGTTTCCATTGAAAAACATGAAACAAAAGCCATCCATTGGCAAGAAA
62 AAC-AGATCATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAACCATCCATTGACAAGAAA
* ** * *
22607762 AGTCTATTTATAGTCACGAATGCCTTCAAAAGCCTAT-TTACTTG
126 AGTCCATTTATAGTCACTCATGCCTTCGAAAGCCT-TGTTACTCG
* * * * * *
22607806 C-TTCAGATGGTTTTATAATCTTATAAATGATTTCAATTTCAATTTGTTTTCACTTTTGGTTAAA
1 CTTTAAG-TGGATTTATAA-CTTATAAATGATTTTAAATTGAATTT-TTTTCATTTTTGGTTAAA
** ** * * * ** * * * *
22607870 ATGGATCATTGTTTGTTGTTTGCATCGAGAAATGTAAAACGAAAACTATCCATTGACAAGAAAAG
63 ACAGATCATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAACCATCCATTGACAAGAAAAG
* * * * *
22607935 TCTAGTTATAGTTACTCATGCCTT--TAAG---TG-GA-T--
128 TCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCG
* * * *** * *
22607968 -TTCTAACT--AATTA-AA-TGATTCCT-A-TTTGAA-T---TTGTTTTCATTTTTGGTTAAAAC
1 CTT-TAAGTGGATTTATAACTTATAAATGATTTTAAATTGAATTTTTTTCATTTTTGGTTAAAAC
* * * *** * * *
22608022 AGATCATAGTTTGTTGTTTACATCATGAAACGTGAAGCGAAACCCATCCATTGACAAGAAAAGTC
65 AGATCATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAACCATCCATTGACAAGAAAAGTC
* * * *
22608087 TATTTATCA-TCACTAATGCCTTCAAAAGACTAT-TTACTCG
130 CATTTAT-AGTCACTCATGCCTTCGAAAGCCT-TGTTACTCG
* * * * *
22608127 C-TTCAGATGGTTTTATAATCTTATAAATGATTTCAATTTGAATTTGTTTTCTTTTTTGGTTAAA
1 CTTTAAG-TGGATTTATAA-CTTATAAATGATTTTAAATTGAATTT-TTTTCATTTTTGGTTAAA
* * * *
22608191 ACAGATCAT-A--GGTTGTTTACATTGGGAAATATGAAGCAAAAACCATCCATTGACAAGAAAAG
63 ACAGATCATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAACCATCCATTGACAAGAAAAG
* * * *
22608253 TCTATTTATAGTCACTCATGTCC-TCAAAAGCCTAGTTAGTCG
128 TCCATTTATAGTCACTCATG-CCTTCGAAAGCCTTGTTACTCG
* * * * * *
22608295 CTTTAAATGGTTTTATAATCGTATAAATGATTTTAAAGTTGAA-TTTTTCCCTTGTTTGATTAAA
1 CTTTAAGTGGATTTATAA-CTTATAAATGATTTTAAA-TTGAATTTTTTTCATT-TTTGGTTAAA
* * * *
22608359 ACAGATCACAATTTGATGTTTGCATTGGGAAACGTGAA-AAAAAAGCCATACATTGACAAGAAAA
63 ACAGATCATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAA-CCATCCATTGACAAGAAAA
* * ** *
22608423 GTCTATTTATAGTGGA-T--TTAC-TCGAAAGCCTTATTACTCG
127 GTCCATTTATAGT-CACTCATGCCTTCGAAAGCCTTGTTACTCG
* * * *
22608463 GTTTAAGTGGATTTATAACTTTTTAAATGATTTTGAATTTGAATTTTTTTTACAATTTTGGTTAA
1 CTTTAAGTGGATTTATAAC-TTATAAATGATTTT-AAATTGAA-TTTTTTT-CATTTTTGGTTAA
* ** * * ** * *
22608528 AACATATTGTAATTTGATGTCTACATTGGGAAATGTGAAGCAAAAGCCATCCATTGAGAAGAAAA
62 AACAGATCATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAACCATCCATTGACAAGAAAA
* * *
22608593 GTCCATTTATAGTCACTCATGCCTT-TATATGCCTTGTTACTTG
127 GTCCATTTATAGTCACTCATGCCTTCGA-AAGCCTTGTTACTCG
* * * ***
22608636 GTTTAAATGGATTTATAACTTTTTAAATGATCGCAAATTGAATTTTTTTTTTTTACATATTTTGG
1 CTTTAAGTGGATTTATAAC-TTATAAATGATTTTAAATTGAA-----TTTTTTT-CAT-TTTTGG
* * * * ** ** * *
22608701 TTAAAACAGATTATAATTTGATGTTTGCATTAGAAAACGTGAAGTGAAAGTCAGCCATTAACAAG
58 TTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAACCATCCATTGACAAG
* * *
22608766 AAAAGTCCATTTATAGTCACTCATGGCTTGGAAAGCCTTGTTACTCA
123 AAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCG
* * * * * * * * * *
22608813 CTTTAAGTGGTTTTAGAATGTTTTAATTGATTTTGAGTTGGATTTTTTTGACA-TTTCGATTAAA
1 CTTTAAGTGGATTTATAA-CTTATAAATGATTTTAAATTGAATTTTTTT--CATTTTTGGTTAAA
* * ** ** * * **
22608877 AAAGATCATAGTTTGATGTTTGTGTAAGGAAACGTGAAGCAAAAACCTTCTGTTGACAAGAAAAG
63 ACAGATCATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAACCATCCATTGACAAGAAAAG
* * * * * *
22608942 TCCAGTTATAGTCACCCATGCCTTCAAAAGGCTTGTTATTCT
128 TCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCG
* * * * *
22608984 ATTTAATTGGATTTGTAACATTATAAATGCTTTTAAATTGATTTTTTTTCATTTTTGGTT--AA-
1 CTTTAAGTGGATTTATAAC-TTATAAATGATTTTAAATTGAATTTTTTTCATTTTTGGTTAAAAC
* * * * **
22609046 AGATACGATAACTTG-TTTTTCGCATT-AGAAA-ATGTAAAG-AAAAAGCTATTTATTGACAAGA
65 AGAT-C-ATAATTTGATGTTT-GCATTGGGAAACATG--AAGCAAAAA-CCATCCATTGACAAGA
* * * *
22609107 AAAGTCCAGTTATATTAACTCATACCTTCGAAAGCCTTGTTACTCG
124 AAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCG
* * * *
22609153 CTTTAAGTGGATTTCTAACTCTTTAAATGATTTTAACTTGAATTGTTTTTACATTTTTTGTTAAA
1 CTTTAAGTGGATTTATAACT-TATAAATGATTTTAAATTGAATT-TTTTT-CATTTTTGGTTAAA
* * * ** * * * * *
22609218 ACATATCATAAATTGATGTTTTCATCAGGAGACGTGAAAC-AAAGCTATCCATTGACAAGAAAAG
63 ACAGATCATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAACCATCCATTGACAAGAAAAG
* * * *
22609282 -CCTATTTACAGTCACTAATGCCTTC-AGAGGCCTAT-TTACTCA
128 TCC-ATTTATAGTCACTCATGCCTTCGA-AAGCCT-TGTTACTCG
* * * * * *
22609324 CTTCATA-TGGTTTTATAATCTTATAAATGATTTCAATTTGAATTTCTTTTCATTTTTGGCTACA
1 CTTTA-AGTGGATTTATAA-CTTATAAATGATTTTAAATTGAATTT-TTTTCATTTTTGGTTAAA
* * * * ** * *
22609388 ACAGATCATAGTTTGTTGTTTGCATT-AGAAAGCATGATGTGAGAACCAGCCATTGACAAGAAAA
63 ACAGATCATAATTTGATGTTTGCATTGGGAAA-CATGAAGCAAAAACCATCCATTGACAAGAAAA
* * *
22609452 GTCC----AT--TCACTCATGCCTTCGAAAGCCTAGTTAGTCA
127 GTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCG
* * * * * *
22609489 CTTTAAATGGTTTTATAATCGTATAAATGATTTGAACATTGAATTTTTCTC-TTTTTCGATTAAA
1 CTTTAAGTGGATTTATAA-CTTATAAATGATTTTAA-ATTGAATTTTTTTCATTTTT-GGTTAAA
* * * *
22609553 ACAGATCATAATTTGATGGTTT-CATTGGGAAACGTGAAG-AAAAAGCAATACATTGACAAGCAA
63 ACAGATCATAATTTGAT-GTTTGCATTGGGAAACATGAAGCAAAAA-CCATCCATTGACAAGAAA
* * ** *
22609616 AGTCTATTTATAGTAACTCATTTCTTCGAAAGCCTTATTAC-CTG
126 AGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTC-G
* * * *
22609660 CTTTAAGTCGATTTATAACTTTTTACATGATTTTAAATTGAATTATTTTTACATTTTTTGTTAAA
1 CTTTAAGTGGATTTATAAC-TTATAAATGATTTTAAATTGAATT-TTTTT-CATTTTTGGTTAAA
* ** * * * ** * * *
22609725 ATAGATTGTAATTTGATGTTGGCATTTGGAAACATCAAGTGAAAGCCAACCATTAACAA-AAAAG
63 ACAGATCATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAACCATCCATTGACAAGAAAAG
* *
22609789 TCCATTTATAGTCACTCATGGCTTGGAAAGCCTTGTTACTCG
128 TCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCG
* * * * * * ***
22609831 CTTTAAGT-GATTTTAGAACTTTTTAACTGATTTTGAATTAGTATTTTTTCACATTTTCCCTTAA
1 CTTTAAGTGGA-TTTATAAC-TTATAAATGATTTTAAATT-GAATTTTTT-TCATTTTTGGTTAA
* * * * * * **
22609895 AA-AGATCATAATTTGATGTTTGCATTAGGAAACGTGACGCTAAAACCTTCCGTTGATGAGAAAA
62 AACAGATCATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAACCATCCATTGACAAGAAAA
* * * * *
22609959 GTCCAGTTACAGTCACTCATGCCTTCTAAAGCCTTGTTATTCT
127 GTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCG
* *
22610002 CTTTAAGTGGATTTATAACTTTATAAATCATTTTAAATGGAATTTTTTTTTCATTTTTGGTTAAA
1 CTTTAAGTGGATTTATAAC-TTATAAATGATTTTAAATTGAA--TTTTTTTCATTTTTGGTTAAA
* * * * * * * *
22610067 GCTGATCACAACTTGTTGTTTGCA-T-CGAAAAATGTAAAGAAAAAACCATCCATTGACAAGAAA
63 ACAGATCATAATTTGATGTTTGCATTGGGAAACATG--AAGCAAAAACCATCCATTGACAAGAAA
* * * * *
22610130 AGTCTAGTTATAGTAACTCATGCCTTCGAAAGTCTTGTTACTCA
126 AGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCG
* * * *
22610174 CTTTAAGTGGATTTCTAACTCTTTAAATGATTTTAACTTGAATTTCTTTTACATTTTTAGTTAAA
1 CTTTAAGTGGATTTATAACT-TATAAATGATTTTAAATTGAATTT-TTTT-CATTTTTGGTTAAA
* *** * * * *
22610239 ACATATCATAATTTGATGTTTGCATCAAGAAACATGAAACAAAAGCTATCCATTGGCAAGAAAAG
63 ACAGATCATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAACCATCCATTGACAAGAAAAG
* * * * *
22610304 TCTATTCATAGTCACTAATGCCTTCAAAAGCCTAT-TTACTCA
128 TCCATTTATAGTCACTCATGCCTTCGAAAGCCT-TGTTACTCG
* * * *
22610346 CTTT-AGATGGTTTTATAATCTTATAAATGATTTCAATTTGAATTTGTTTTCATTTTTGGCTAAA
1 CTTTAAG-TGGATTTATAA-CTTATAAATGATTTTAAATTGAATTT-TTTTCATTTTTGGTTAAA
* * * * * *
22610410 ACATATCATAGTTTGTTGTTTGCATTGGGAAACATGAAGCGAGAACCATCCATTGAAAAGAAAAG
63 ACAGATCATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAACCATCCATTGACAAGAAAAG
* ** * * * * *
22610475 TCCATTTATAATTGCCCATATCCTT-GAAAGCCTAGTTAGTTG
128 TCCATTTATAGTCACTCAT-GCCTTCGAAAGCCTTGTTACTCG
* ** * * * ***
22610517 CTTTAACTGTTTTTATAATCGTATAAATGATTTGAAAATTGAATTTTTCTC-TTTTCAATTAAAA
1 CTTTAAGTGGATTTATAA-CTTATAAATGATTT-TAAATTGAATTTTTTTCATTTTTGGTTAAAA
* * *** ** * *
22610581 TAGATCATAATTTGATGTTTTCATCAAGAAATGTTAAG-AAAAAGCCATACATTGACAAGAAAAG
64 CAGATCATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAA-CCATCCATTGACAAGAAAAG
* * * *
22610645 TCTATTTATAGT-AGCTCATGTCTTCGAAAGCCTTATTACTCT
128 TCCATTTATAGTCA-CTCATGCCTTCGAAAGCCTTGTTACTCG
* * ** * *
22610687 CTTTAAGTAGATTTATAACTTTTTGCATGATTTTAAATAGAATTTTTTTTATATTTTTGGTTAAA
1 CTTTAAGTGGATTTATAAC-TTATAAATGATTTTAAATTGAA-TTTTTTT-CATTTTTGGTTAAA
* * * * *
22610752 ACAGATCGTAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAGCCAACCATTAACAAAAAAAG
63 ACAGATCATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAACCATCCATTGACAAGAAAAG
* * * *
22610817 TCAATTTATAGTCACTCATGGCTTGGAAAGCCTTATTACTCG
128 TCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCG
* * * * * *
22610859 CTTTAAGT-GATTTTAGAACTTTTTAATTGATTTTGAATT-AATATTTCTTCACATTTTTCGTTA
1 CTTTAAGTGGA-TTTATAAC-TTATAAATGATTTTAAATTGAAT-TTT-TT-TCATTTTTGGTTA
* * * * *
22610922 AAAAAGAACATAATTTGATGTTTGCATTGGGAAACGTGAATCTAAAACC
61 AAACAGATCATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAACC
22610971 TTTCGTTGAT
Statistics
Matches: 4750, Mismatches: 1055, Indels: 538
0.75 0.17 0.08
Matches are distributed among these distances:
150 90 0.02
151 4 0.00
152 71 0.01
153 36 0.01
154 10 0.00
155 6 0.00
156 5 0.00
157 5 0.00
158 2 0.00
159 5 0.00
160 4 0.00
161 6 0.00
162 7 0.00
163 4 0.00
164 16 0.00
165 108 0.02
166 22 0.00
167 16 0.00
168 191 0.04
169 156 0.03
170 462 0.10
171 1579 0.33
172 1079 0.23
173 334 0.07
174 243 0.05
175 9 0.00
176 15 0.00
177 127 0.03
178 5 0.00
179 7 0.00
180 115 0.02
181 11 0.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (169 bp):
CTTTAAGTGGATTTATAACTTATAAATGATTTTAAATTGAATTTTTTTCATTTTTGGTTAAAACA
GATCATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAACCATCCATTGACAAGAAAAGTCC
ATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCG
Found at i:22606599 original size:152 final size:154
Alignment explanation
Indices: 22606329--22606609 Score: 358
Period size: 152 Copynumber: 1.8 Consensus size: 154
22606319 GAATTTTTCT
* * * *
22606329 ATTTTTCGATTAAAATAGATCATGATTTGATGTTTTCATCGGGACACATGAAGAAAAAGCCATAC
1 ATTTTTCGATTAAAACAGATCATAATTTGATATTTGCATCGGGACACATGAAGAAAAAGCCATAC
* * * *
22606394 ATTGACAAGAAAAGTCTATTTATAGTAACTCATGTCTTTGAAAGCCTTATTACTCGCTTTAAGTC
66 ATTAACAAAAAAAGTCCATTTATAGTAACTCATGTCTTTGAAAACCTTATTACTCGCTTTAAGTC
22606459 TTTGAAATTGAATTTTTTTTTTAC
131 TTTGAAATTGAATTTTTTTTTTAC
* * **
22606483 ATTTTT-GGTTAAAACAGATCATAATTTGATATTTGCAT-TGGA-AGCATGAAGCGAAAGCCA-A
1 ATTTTTCGATTAAAACAGATCATAATTTGATATTTGCATCGGGACA-CATGAAGAAAAAGCCATA
* *
22606544 CCATTAACAAAAAAAGTCCATTTATAGTCACTCATAG-C-TTGAAAAACCTTGTTACTCGCTTTA
65 -CATTAACAAAAAAAGTCCATTTATAGTAACTCAT-GTCTTTG-AAAACCTTATTACTCGCTTTA
22606607 AGT
127 AGT
22606610 GATTTTAGAA
Statistics
Matches: 109, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
151 5 0.05
152 70 0.64
153 28 0.26
154 6 0.06
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.36
Consensus pattern (154 bp):
ATTTTTCGATTAAAACAGATCATAATTTGATATTTGCATCGGGACACATGAAGAAAAAGCCATAC
ATTAACAAAAAAAGTCCATTTATAGTAACTCATGTCTTTGAAAACCTTATTACTCGCTTTAAGTC
TTTGAAATTGAATTTTTTTTTTAC
Found at i:22606968 original size:20 final size:18
Alignment explanation
Indices: 22606943--22606980 Score: 58
Period size: 20 Copynumber: 2.0 Consensus size: 18
22606933 TTGTTACTCA
22606943 CTTTAAATGCATTTCTAACT
1 CTTTAAATG-ATTT-TAACT
22606963 CTTTAAATGATTTTAACT
1 CTTTAAATGATTTTAACT
22606981 TGCATTGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.28
19 4 0.22
20 9 0.50
ACGTcount: A:0.32, C:0.16, G:0.05, T:0.47
Consensus pattern (18 bp):
CTTTAAATGATTTTAACT
Found at i:22608106 original size:150 final size:150
Alignment explanation
Indices: 22607829--22608108 Score: 384
Period size: 150 Copynumber: 1.9 Consensus size: 150
22607819 TATAATCTTA
* ** * *
22607829 TAAATGATTTCAATTTCAATTTGTTTTCACTTTTGGTTAAAATGGATCATTGTTTGTTGTTTGCA
1 TAAATGATTCCAATTTCAATTTGTTTTCACTTTTGGTTAAAACAGATCATAGTTTGTTGTTTACA
* * * *
22607894 TCGAGAAATGTAAAACGAAAACTATCCATTGACAAGAAAAGTCTAGTTATAGTTACTCATGCCTT
66 TCGAGAAACGTAAAACGAAAACCATCCATTGACAAGAAAAGTCTAGTTATAGTCACTAATGCCTT
22607959 TAAGTGGATTTCTAACTAAT
131 TAAGTGGATTTCTAACTAAT
* * *
22607979 TAAATGATTCCTATTTGAATTTGTTTTCATTTTTGGTTAAAACAGATCATAGTTTGTTGTTTACA
1 TAAATGATTCCAATTTCAATTTGTTTTCACTTTTGGTTAAAACAGATCATAGTTTGTTGTTTACA
* * * *
22608044 TC-ATGAAACGTGAAGCGAAACCCATCCATTGACAAGAAAAGTCTATTTATCA-TCACTAATGCC
66 TCGA-GAAACGTAAAACGAAAACCATCCATTGACAAGAAAAGTCTAGTTAT-AGTCACTAATGCC
22608107 TT
129 TT
22608109 CAAAAGACTA
Statistics
Matches: 112, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
149 1 0.01
150 110 0.98
151 1 0.01
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.39
Consensus pattern (150 bp):
TAAATGATTCCAATTTCAATTTGTTTTCACTTTTGGTTAAAACAGATCATAGTTTGTTGTTTACA
TCGAGAAACGTAAAACGAAAACCATCCATTGACAAGAAAAGTCTAGTTATAGTCACTAATGCCTT
TAAGTGGATTTCTAACTAAT
Found at i:22611955 original size:27 final size:26
Alignment explanation
Indices: 22611925--22611977 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 26
22611915 ATGATTGAAG
*
22611925 ATTGAGTTATCATGATGAATTCAATT
1 ATTGAGTTATCATAATGAATTCAATT
22611951 NATTGAGTTATCATAATGAATTCAATT
1 -ATTGAGTTATCATAATGAATTCAATT
22611978 CTGAAAAATG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.36, C:0.08, G:0.13, T:0.42
Consensus pattern (26 bp):
ATTGAGTTATCATAATGAATTCAATT
Found at i:22619307 original size:514 final size:511
Alignment explanation
Indices: 22617764--22620252 Score: 2163
Period size: 514 Copynumber: 4.9 Consensus size: 511
22617754 TCGTGACATG
* ** * * ** * *
22617764 AGAAAAGTCCAGTTACAGTCACTCATGCCTTCTAAAGCCT-TGTTGTTCTCTTTAAGTGGATTT-
1 AGAAAAGTCCATTTGTAGTCACTCATGCCCTCGAAAGCCTAT-TTAATCACTTTAAATGG-TTTC
* * * * * *
22617827 ATAA-CTTTATAAATGATTTT-AAATGGAAATTTTT-ACTTTTTTGGTTAAAGTAGATCATAACT
64 ATAATC-ATATAAATGATTTTAAAATTG-AATTTTTCTCTTTTTTAGTTAAA-AAGATCATAATT
* * * * ** * * *
22617889 TGTTGTTTGCATTGGAAAACGTAAAGAAAAAACCATCCATTGACAAGAAAAGT-TCAGTTATAGT
126 TGATGTTAGCATCGGGAAACGTAAAGAAAAAGGCATACATTGACAAGAAAAGTCT-ATTTGTAGT
* * * *
22617953 AACTCATGCCTTCGAAAGCC-TATTTACTCGCTTCATA-TGGTTTTATAAAC-TTATAAATGATT
190 CACTCATGCCTTCAAAAGCCTTA-TTACTCGCTTCA-AGTGGATTTAT-AACTTTTTAAATGATT
* * * * * * * * * *
22618015 TCAATTTGAATTT-TTTCT-CATTTTTAGTTAAAACAGATTATAGTTTGTTGTATT-CA-TCGAG
252 TTAAATTAAATTTATTT-TACATTTTTGGTTAAAATAAATCATAATTTGATGT-TTGCATTAG-G
* * * * ** *
22618076 AAACATGAAGGGAAAA-CCATCCATGGACAAGAAAAGTCCATTTATAGTCACTCACGCTCTT-GA
314 AAACGTGAA-GCAAAAGCCATCCATTGACAACAAAAGTCCATTTATAGTCACTCATAC-CTTCAA
* * * * * * * *
22618139 AAGTCTATTTAGTCGCTTTAAATGGTTTCATAATCATATAAATGATTTTAGAATTGAA-TTTTTC
377 AAGCCTATTTACTTGCTTCAAATGATTTTATAATCTTATAAATGA-TTT-CAATTGAATTTTTTC
* * * * * * *
22618203 T--TTTCTAT-GTTA-AACAGATCATAATTTGATGTTCGCATCGGGAAACGTGAA---AAAAGGC
440 TCATTT-T-TGGTTATAACAGATAATAGTTTGTTGTTTGTAT-GGGAAATGTGAAGTGAAAA-CC
* * *
22618261 ATACAGTGACA
501 ATCCATTGATA
* * * * * * * *
22618272 AGAAAATTCTATTTATAGTCACTTATGCCTTTGAAAGCCT-TATTACTCCCTTTAAATGG----A
1 AGAAAAGTCCATTTGTAGTCACTCATGCCCTCGAAAGCCTAT-TTAATCACTTTAAATGGTTTCA
* * * * * * *
22618332 T--T--TATAACT--TTTT-AAATTGATTTTTTTTACATTTTT-GATTAAAACAAATCGTATTTT
65 TAATCATATAAATGATTTTAAAATTGAATTTTTCT-CTTTTTTAG-TTAAAA-AGATCATAATTT
* * * * ** * * * * ** * * *
22618389 GATGTTTGCATTGGGAAACATGAAGTGAAAGCCATGCATTAACAACAAAAGAGTAGTTATAGTAA
127 GATGTTAGCATCGGGAAACGTAAAGAAAAAGGCATACATTGACAAGAAAAGTCTATTTGTAGTCA
* * * * *
22618454 CTAATGCCTTCAAAAGCCTTGTTACTCGCTTTAAGTGGATTTCTAACTCTTTAAATGATTTTAAA
192 CTCATGCCTTCAAAAGCCTTATTACTCGCTTCAAGTGGATTTATAACTTTTTAAATGATTTTAAA
* * * * * * *
22618519 TTGAATTTCTTTCACAATTTTAGTTAAAACAAATCATAATTTGATGTTTACATT-GAGAAACGTG
257 TTAAATTTATTTTACATTTTTGGTTAAAATAAATCATAATTTGATGTTTGCATTAG-GAAACGTG
* * * * *
22618583 AAACAAAAGCCATCCATGGACAATAAAAG-CCTATTTATAGTCCCTAATACCTTCAAAAGCCTAT
321 AAGCAAAAGCCATCCATTGACAACAAAAGTCC-ATTTATAGTCACTCATACCTTCAAAAGCCTAT
*
22618647 TTACTTGCTTCAAATGGTTTTATAATCTTATAAATGATTTCAATTGAATTTTTTCTCATTTTTGG
385 TTACTTGCTTCAAATGATTTTATAATCTTATAAATGATTTCAATTGAATTTTTTCTCATTTTTGG
* * *
22618712 TTATAACAGATCATAGTTTGTTGATTGTATAAGGAAATGTGAAGTGAAAACCATCCATTGATA
450 TTATAACAGATAATAGTTTGTTGTTTGTAT-GGGAAATGTGAAGTGAAAACCATCCATTGATA
** *
22618775 AGAAAAGTCCATTTGTAGTCACTCATGCCCTCGAAAGCCTATTTAATTTCTTCAAATGGTTTCAT
1 AGAAAAGTCCATTTGTAGTCACTCATGCCCTCGAAAGCCTATTTAATCACTTTAAATGGTTTCAT
* *
22618840 AATCATATAAATGATTTTAAAATTGAATTTTTCTCTTTTTTAGATAGAACAGATCATAATTTGAT
66 AATCATATAAATGATTTTAAAATTGAATTTTTCTCTTTTTTAGTTA-AAAAGATCATAATTTGAT
* * * * *
22618905 GTTCGCATCGAGAAACGTAAAGAAAAAGGCATACATTAACAAGAAAAATCTGTTTGTAGTCACTC
130 GTTAGCATCGGGAAACGTAAAGAAAAAGGCATACATTGACAAGAAAAGTCTATTTGTAGTCACTC
* *
22618970 ATGCCTTCGAAAGCCTTATTACTCGCTTCAAGTAGATTTATAACTTTTTAAATGATTTTAAATTA
195 ATGCCTTCAAAAGCCTTATTACTCGCTTCAAGTGGATTTATAACTTTTTAAATGATTTTAAATTA
* * * * * *
22619035 AATTTTATTTTACGTTTGTGGTTAAAATAAATCGTAATTTGATGTTTGCTTTAGGAAACATGATG
260 AA-TTTATTTTACATTTTTGGTTAAAATAAATCATAATTTGATGTTTGCATTAGGAAACGTGAAG
*
22619100 CGAAAGCCATCCATTGACAACAAAAGTCCATTTATAGTCACTCATACCTTCAAAAGCCTATTTAC
324 CAAAAGCCATCCATTGACAACAAAAGTCCATTTATAGTCACTCATACCTTCAAAAGCCTATTTAC
* *
22619165 TTGCTTCAGATGCTTTTATAATCTTATAAATGATTTCAATTGAATTTTTTCTCATTTTTGGTTAT
389 TTGCTTCAAATGATTTTATAATCTTATAAATGATTTCAATTGAATTTTTTCTCATTTTTGGTTAT
22619230 AACAGATAATAGTTTGTTGTTTGTATCGGGAAATGTGAAGTGAAAACCATCCATTGATA
454 AACAGATAATAGTTTGTTGTTTGTAT-GGGAAATGTGAAGTGAAAACCATCCATTGATA
* *
22619289 AGAAAAGTCCATTTGTAGTCACTCATGCCCTCGAAAGCCTATTTAGTCGCTTTAAATGGTTTCAT
1 AGAAAAGTCCATTTGTAGTCACTCATGCCCTCGAAAGCCTATTTAATCACTTTAAATGGTTTCAT
* *
22619354 AATCGTTTAAATGATTTTAAAATTGAATTTTTCTCTTTTTTAGTTAAAAGAGATCATAATTTGAT
66 AATCATATAAATGATTTTAAAATTGAATTTTTCTCTTTTTTAGTTAAAA-AGATCATAATTTGAT
* *
22619419 GTTAGCATCGGGAAACATAAAGAAAAAGGCATACATTGACAAGAGAAGTCTATTTGTAGTCACTC
130 GTTAGCATCGGGAAACGTAAAGAAAAAGGCATACATTGACAAGAAAAGTCTATTTGTAGTCACTC
*
22619484 ATGCCTTCGAAAGCCTTATTACTCGCTTCAAGTGGATTTATAACTTTTTAAAT-ATTTTAAATTA
195 ATGCCTTCAAAAGCCTTATTACTCGCTTCAAGTGGATTTATAACTTTTTAAATGATTTTAAATTA
* * * * * *
22619548 AATTTTATTTTACGTTTTTGGTTTAAATAGATCATAATTTGATGTTTTCTTTAGGAAACGTGATG
260 AA-TTTATTTTACATTTTTGGTTAAAATAAATCATAATTTGATGTTTGCATTAGGAAACGTGAAG
* ** ** ** *
22619613 CGAAAGCCATCCATTGACAACAAAAGTTTATTTATAGTCACTCATGGCTTGGAAAGCCTTTTTAC
324 CAAAAGCCATCCATTGACAACAAAAGTCCATTTATAGTCACTCATACCTTCAAAAGCCTATTTAC
**
22619678 TCACTTCAAATGATTTTATAATCTTATAAATGATTTCAAATTGAATTTTTT-TCAATTTTT-GTT
389 TTGCTTCAAATGATTTTATAATCTTATAAATGATTTC-AATTGAATTTTTTCTC-ATTTTTGGTT
* * * * * * * ** ** ***
22619741 AAAATACATTATAATTTGTTGTTTGTAATGAGAAACGTCCAGCAAAAACC-TTTGTTGATA
452 ATAACAGATAATAGTTTGTTGTTTGT-ATGGGAAATGTGAAGTGAAAACCATCCATTGATA
* * * * * * * *
22619801 AGAAAAGTCCATTTATTGTCATTCATGCCTTCGAGAG-CTTTATTACTCACTTTAAGTGGTTTCA
1 AGAAAAGTCCATTTGTAGTCACTCATGCCCTCGAAAGCCTAT-TTAATCACTTTAAATGGTTTCA
* * * * * * * *
22619865 GAA-CTTTATAAATGATTTT-AGATTGAATTTCTTATCATCTTTGGTTAAAAAGGACCATAATTT
65 TAATC-ATATAAATGATTTTAAAATTGAATTT-TTCTCTTTTTTAGTTAAAAA-GATCATAATTT
* * ** * * *
22619928 GATGTTTA-CATCGGGAGACGTGAAGTGAAA-GCAATCCATTGACAAGAAAAGTCTATTTATAGG
127 GATG-TTAGCATCGGGAAACGTAAAGAAAAAGGC-ATACATTGACAAGAAAAGTCTATTTGTAGT
* * * * * * * * *
22619991 CACTTATACCTTCAAAAGCCTTGTTACTCGCTTGAAGTGGTTTTAGAACTTTTTACATAATTATA
190 CACTCATGCCTTCAAAAGCCTTATTACTCGCTTCAAGTGGATTTATAACTTTTTAAATGATTTTA
* * * *
22620056 AATTATATTT-TTTTACATTTTTGGTTAAAA-AGGATCATAATTTGATGTTTGCATTGGGAAACC
255 AATTAAATTTATTTTACATTTTTGGTTAAAATA-AATCATAATTTGATGTTTGCATTAGGAAACG
* * * * ** * *
22620119 TGAAGAAAAAGCCATCAATTGATAAGAAAAGAT-CAACTATAGTCACTCATGCCTTCGAAAGCCT
319 TGAAGCAAAAGCCATCCATTGACAACAAAAG-TCCATTTATAGTCACTCATACCTTCAAAAGCCT
* * * * * *
22620183 -TATTA-TTCTCTTTAAGTGGA-TTTAT-TTCTTTATAAATGATTTTAAATTGAATTTTTT-TTA
383 AT-TTACTT-GCTTCAAAT-GATTTTATAATC-TTATAAATGA-TTTCAATTGAATTTTTTCTCA
22620243 TTTTTGGTTA
443 TTTTTGGTTA
22620253 AAGTAGGTCA
Statistics
Matches: 1668, Mismatches: 253, Indels: 117
0.82 0.12 0.06
Matches are distributed among these distances:
497 6 0.00
498 21 0.01
499 148 0.09
500 130 0.08
501 35 0.02
503 56 0.03
504 7 0.00
507 2 0.00
508 47 0.03
509 1 0.00
510 11 0.01
511 161 0.10
512 203 0.12
513 349 0.21
514 488 0.29
515 3 0.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (511 bp):
AGAAAAGTCCATTTGTAGTCACTCATGCCCTCGAAAGCCTATTTAATCACTTTAAATGGTTTCAT
AATCATATAAATGATTTTAAAATTGAATTTTTCTCTTTTTTAGTTAAAAAGATCATAATTTGATG
TTAGCATCGGGAAACGTAAAGAAAAAGGCATACATTGACAAGAAAAGTCTATTTGTAGTCACTCA
TGCCTTCAAAAGCCTTATTACTCGCTTCAAGTGGATTTATAACTTTTTAAATGATTTTAAATTAA
ATTTATTTTACATTTTTGGTTAAAATAAATCATAATTTGATGTTTGCATTAGGAAACGTGAAGCA
AAAGCCATCCATTGACAACAAAAGTCCATTTATAGTCACTCATACCTTCAAAAGCCTATTTACTT
GCTTCAAATGATTTTATAATCTTATAAATGATTTCAATTGAATTTTTTCTCATTTTTGGTTATAA
CAGATAATAGTTTGTTGTTTGTATGGGAAATGTGAAGTGAAAACCATCCATTGATA
Found at i:22620369 original size:170 final size:168
Alignment explanation
Indices: 22617764--22620448 Score: 1903
Period size: 171 Copynumber: 15.8 Consensus size: 168
22617754 TCGTGACATG
* * * ** *
22617764 AGAAAAGTCCAGTTACAGTCACTCATGCCTTCTAAAGCCTTGTTGTTCTCTTTAAGTGGATTTAT
1 AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTT-TTACTCGCTTTAAGTGGATTTAT
* ** * * *
22617829 AACTTTATAAATGATTTTAAATGGAAATTTTTACT-TTTTTGGTTAAAGTAGATCATAACTTGTT
65 AACTTTATAAATGATTTTAAATTG-AATTTTTTTTATTTTTGGTTAAA-CAGATCATAATTTGAT
* *
22617893 GTTTGCATT-GGAAAACGTAAAGAAAAAACCATCCATTGACA
128 GTTTGCATTAGG-AAACGTGAAGAAAAAGCCATCCATTGACA
* * * * *
22617934 AGAAAAGTTCAGTTATAGTAACTCATGCCTTCGAAAGCCTATTTACTCGCTTCATA-TGGTTTTA
1 AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCT-TTTACTCGCTTTA-AGTGGATTTA
* * * * * *
22617998 TAAAC-TTATAAATGATTTCAATTTGAATTTTTTCTCATTTTTAGTTAAAACAGATTATAGTTTG
64 T-AACTTTATAAATGATTTTAAATTGAATTTTTT-TTATTTTTGGTT-AAACAGATCATAATTTG
* * * * *
22618062 TTGTATT-CA-TCGAGAAACATGAAGGGAAAA-CCATCCATGGACA
126 ATGT-TTGCATTAG-GAAACGTGAA-GAAAAAGCCATCCATTGACA
* * * *
22618105 AGAAAAGTCCATTTATAGTCACTCACGCTCTT-GAAAGTCTATTTAGTCGCTTTAAATGG-TTTC
1 AGAAAAGTCCATTTATAGTCACTCATGC-CTTCGAAAGCCT-TTTACTCGCTTTAAGTGGATTT-
* * *
22618168 ATAA-TCATATAAATGATTTTAGAATTGAATTTTTCTTT-TCTAT-GTTAAACAGATCATAATTT
63 ATAACT-TTATAAATGATTTTA-AATTGAATTTTT-TTTATTTTTGGTTAAACAGATCATAATTT
* ** * * *
22618230 GATGTTCGCATCGGGAAACGTG-A-AAAAAGGCATACAGTGACA
125 GATGTTTGCATTAGGAAACGTGAAGAAAAAGCCATCCATTGACA
* * * * * *
22618272 AGAAAATTCTATTTATAGTCACTTATGCCTTTGAAAGCCTTATTACTCCCTTTAAATGGATTTAT
1 AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTT-TTACTCGCTTTAAGTGGATTTAT
* * * *
22618337 AAC--------T--TTTTAAATTG-ATTTTTTTTACATTTTTGATTAAAACAAATCGTATTTTGA
65 AACTTTATAAATGATTTTAAATTGAATTTTTTTT--ATTTTTGGTT-AAACAGATCATAATTTGA
* * ** * *
22618391 TGTTTGCATTGGGAAACATGAAGTGAAAGCCATGCATTAACA
127 TGTTTGCATTAGGAAACGTGAAGAAAAAGCCATCCATTGACA
* *** * * * * *
22618433 ACAAAAGAGTAGTTATAGTAACTAATGCCTTCAAAAGCCTTGTTACTCGCTTTAAGTGGATTTCT
1 AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTT-TTACTCGCTTTAAGTGGATTTAT
** * * *
22618498 AACTCTT-TAAATGATTTTAAATTGAATTTCTTTCACAATTTTAGTTAAAACAAATCATAATTTG
65 AACT-TTATAAATGATTTTAAATTGAATTT-TTT-TTATTTTTGGTT-AAACAGATCATAATTTG
* *
22618562 ATGTTTACATT-GAGAAACGTGAA-ACAAAAGCCATCCATGGACA
126 ATGTTTGCATTAG-GAAACGTGAAGA-AAAAGCCATCCATTGACA
* * * * * * * * *
22618605 ATAAAAG-CCTATTTATAGTCCCTAATACCTTCAAAAGCCTATTTACTTGCTTCAAATGGTTTTA
1 AGAAAAGTCC-ATTTATAGTCACTCATGCCTTCGAAAGCCT-TTTACTCGCTTTAAGTGGATTTA
* * *
22618669 TAA-TCTTATAAATGA-TTTCAATTGAATTTTTTCTCATTTTTGGTTATAACAGATCATAGTTTG
64 TAACT-TTATAAATGATTTTAAATTGAATTTTTT-TTATTTTTGGTTA-AACAGATCATAATTTG
* * * * * * *
22618732 TTGATTGTATAAGGAAATGTGAAGTGAAAA-CCATCCATTGATA
126 ATGTTTGCATTAGGAAACGTGAAG-AAAAAGCCATCCATTGACA
* * * ** * *
22618775 AGAAAAGTCCATTTGTAGTCACTCATGCCCTCGAAAGCCTATTTAATTTCTTCAAATGG-TTTCA
1 AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCT-TTTACTCGCTTTAAGTGGATTT-A
* * * *
22618839 TAA-TCATATAAATGATTTTAAAATTGAATTTTTCTCT-TTTTTAGATAGAACAGATCATAATTT
64 TAACT-TTATAAATGATTTT-AAATTGAATTTTT-TTTATTTTTGGTTA-AACAGATCATAATTT
* * * * * *
22618902 GATGTTCGCA-TCGAGAAACGTAAAGAAAAAGGCATACATTAACA
125 GATGTTTGCATTAG-GAAACGTGAAGAAAAAGCCATCCATTGACA
* ** * * *
22618946 AGAAAAATCTGTTTGTAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTCAAGTAGATTTAT
1 AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTT-TTACTCGCTTTAAGTGGATTTAT
* * * * * *
22619011 AACTTTTTAAATGATTTTAAATTAAATTTTATTTTACGTTTGTGGTTAAAATAAATCGTAATTTG
65 AACTTTATAAATGATTTTAAATTGAATTTT-TTTTA--TTTTTGGTT-AAACAGATCATAATTTG
* * * **
22619076 ATGTTTGCTTTAGGAAACATGATGCGAAAGCCATCCATTGACA
126 ATGTTTGCATTAGGAAACGTGAAGAAAAAGCCATCCATTGACA
* * * * * **
22619119 ACAAAAGTCCATTTATAGTCACTCATACCTTCAAAAGCCTATTTACTTGC-TTCAGATGCTTTTA
1 AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCT-TTTACTCGCTTTAAG-TGGATTTA
* * * *
22619183 TAA-TCTTATAAATGA-TTTCAATTGAATTTTTTCTCATTTTTGGTTATAACAGATAATAGTTTG
64 TAACT-TTATAAATGATTTTAAATTGAATTTTTT-TTATTTTTGGTTA-AACAGATCATAATTTG
* * ** * * *
22619246 TTGTTTGTATCGGGAAATGTGAAGTGAAAA-CCATCCATTGATA
126 ATGTTTGCATTAGGAAACGTGAAG-AAAAAGCCATCCATTGACA
* * * *
22619289 AGAAAAGTCCATTTGTAGTCACTCATGCCCTCGAAAGCCTATTTAGTCGCTTTAAATGG-TTTCA
1 AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCT-TTTACTCGCTTTAAGTGGATTT-A
* * * *
22619353 TAATCGTT-TAAATGATTTTAAAATTGAATTTTTCTCT-TTTTTAGTTAAAAGAGATCATAATTT
64 TAA-CTTTATAAATGATTTT-AAATTGAATTTTT-TTTATTTTTGGTT-AAACAGATCATAATTT
* ** * * * *
22619416 GATGTTAGCATCGGGAAACATAAAGAAAAAGGCATACATTGACA
125 GATGTTTGCATTAGGAAACGTGAAGAAAAAGCCATCCATTGACA
* * * *
22619460 AGAGAAGTCTATTTGTAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTCAAGTGGATTTAT
1 AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTT-TTACTCGCTTTAAGTGGATTTAT
* * *
22619525 AACTTTTTAAAT-ATTTTAAATTAAATTTTATTTTACGTTTTTGGTTTAAATAGATCATAATTTG
65 AACTTTATAAATGATTTTAAATTGAATTTT-TTTTA--TTTTTGG-TTAAACAGATCATAATTTG
* * * **
22619589 ATGTTTTCTTTAGGAAACGTGATGCGAAAGCCATCCATTGACA
126 ATGTTTGCATTAGGAAACGTGAAGAAAAAGCCATCCATTGACA
* ** * * * * *
22619632 ACAAAAGTTTATTTATAGTCACTCATGGCTTGGAAAGCCTTTTTACTCACTTCAAAT-GATTTTA
1 AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCC-TTTTACTCGCTTTAAGTGGA-TTTA
* * * * *
22619696 TAA-TCTTATAAATGATTTCAAATTGAATTTTTTTCAATTTTT-GTTAAAATACATTATAATTTG
64 TAACT-TTATAAATGATTTTAAATTGAATTTTTTT-TATTTTTGGTT-AAACAGATCATAATTTG
* * * ** *** *
22619759 TTGTTTGTAAT-GAGAAACGTCCAGCAAAAA-CC-TTTGTTGATA
126 ATGTTTGCATTAG-GAAACGTGAAG-AAAAAGCCATCCATTGACA
* * * * *
22619801 AGAAAAGTCCATTTATTGTCATTCATGCCTTCGAGAGCTTTATTACTCACTTTAAGTGG-TTTCA
1 AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTT-TTACTCGCTTTAAGTGGATTT-A
* * * * * * *
22619865 GAACTTTATAAATGATTTTAGATTGAATTTCTTATCATCTTTGGTTAAAAAGGACCATAATTTGA
64 TAACTTTATAAATGATTTTAAATTGAATTT-TTTTTATTTTTGGTTAAACA-GATCATAATTTGA
* ** * ** *
22619930 TGTTTACATCGGGAGACGTGAAGTGAAAGCAATCCATTGACA
127 TGTTTGCATTAGGAAACGTGAAGAAAAAGCCATCCATTGACA
* * * * * * * *
22619972 AGAAAAGTCTATTTATAGGCACTTATACCTTCAAAAGCCTTGTTACTCGCTTGAAGTGGTTTTAG
1 AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTT-TTACTCGCTTTAAGTGGATTTAT
* * * * * *
22620037 AACTTTTTACATAATTATAAATT-ATATTTTTTTACATTTTTGGTTAAAAAGGATCATAATTTGA
65 AACTTTATAAATGATTTTAAATTGA-ATTTTTTT-TATTTTTGGTTAAACA-GATCATAATTTGA
* * * *
22620101 TGTTTGCATTGGGAAACCTGAAGAAAAAGCCATCAATTGATA
127 TGTTTGCATTAGGAAACGTGAAGAAAAAGCCATCCATTGACA
** * *
22620143 AGAAAAGAT-CAACTATAGTCACTCATGCCTTCGAAAGCCTTATTATTCTCTTTAAGTGGATTTA
1 AGAAAAG-TCCATTTATAGTCACTCATGCCTTCGAAAGCCTT-TTACTCGCTTTAAGTGGATTTA
** * * * *
22620207 TTTCTTTATAAATGATTTTAAATTGAATTTTTTTTATTTTTGGTTAAAGTAGGTCATAACTTGTT
64 TAACTTTATAAATGATTTTAAATTGAATTTTTTTTATTTTTGGTTAAA-CAGATCATAATTTGAT
* *
22620272 GTTTGCATTAGAAAACGTGAAGAAAAAGTCATCCATTGACA
128 GTTTGCATTAGGAAACGTGAAGAAAAAGCCATCCATTGACA
* * * * * * * * *
22620313 AGCAAAGTCCAATTACAGTAACTCATGCCTTCAAAAGCCTTGTTACTTGGTTTAAGTTGAATTAT
1 AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTT-TTACTCGCTTTAAGTGGATTTAT
* * ** *
22620378 AACTTTTTAATTGATTTTAAATTGAATTTCCTTTACTTTTTTGGTTAAAACATATCATAATTTGA
65 AACTTTATAAATGATTTTAAATTGAATTTTTTTTA--TTTTTGGTT-AAACAGATCATAATTTGA
22620443 TGTTTG
127 TGTTTG
22620449 TGTGAAACCT
Statistics
Matches: 1979, Mismatches: 416, Indels: 238
0.75 0.16 0.09
Matches are distributed among these distances:
154 3 0.00
155 6 0.00
156 5 0.00
157 8 0.00
158 2 0.00
159 33 0.02
160 1 0.00
161 68 0.03
166 8 0.00
167 59 0.03
168 10 0.01
169 147 0.07
170 538 0.27
171 610 0.31
172 342 0.17
173 135 0.07
174 4 0.00
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.38
Consensus pattern (168 bp):
AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTTTACTCGCTTTAAGTGGATTTATA
ACTTTATAAATGATTTTAAATTGAATTTTTTTTATTTTTGGTTAAACAGATCATAATTTGATGTT
TGCATTAGGAAACGTGAAGAAAAAGCCATCCATTGACA
Found at i:22621744 original size:42 final size:42
Alignment explanation
Indices: 22621678--22621845 Score: 228
Period size: 42 Copynumber: 4.0 Consensus size: 42
22621668 TGTTGATGTG
* * * *
22621678 GACCCGGCTATGTACGAGTAGGAGTGTGCATAAGCCGATGAT
1 GACCCGGCTATGTGCTAGTGGGAGTGCGCATAAGCCGATGAT
*
22621720 GACCCGGCTATGTGCTAGTGGGAGTGCGCATAAGCCTATGAT
1 GACCCGGCTATGTGCTAGTGGGAGTGCGCATAAGCCGATGAT
22621762 GACCCGGCTATGTGCTAGTGGGAGTGCGCATAAGCCGATGAT
1 GACCCGGCTATGTGCTAGTGGGAGTGCGCATAAGCCGATGAT
* * * * * *
22621804 GATCCAGCCATGTGCTAGTGGGGAGTGCACATGAGCTGATGA
1 GACCCGGCTATGTGCTAGT-GGGAGTGCGCATAAGCCGATGA
22621846 CGATGGGAGA
Statistics
Matches: 113, Mismatches: 12, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
42 94 0.83
43 19 0.17
ACGTcount: A:0.23, C:0.20, G:0.35, T:0.22
Consensus pattern (42 bp):
GACCCGGCTATGTGCTAGTGGGAGTGCGCATAAGCCGATGAT
Found at i:22621879 original size:2 final size:2
Alignment explanation
Indices: 22621872--22621902 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
22621862 ATGATGATGA
*
22621872 AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
22621903 CATGTCTAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:22623609 original size:172 final size:170
Alignment explanation
Indices: 22623294--22624097 Score: 751
Period size: 171 Copynumber: 4.7 Consensus size: 170
22623284 TGTAATAGCA
* * * *
22623294 TAAATGATTTTAAAATTGAATGTTTCTA-TTTTTTGGTTAAAACATATCATAATTTGATGTTTGC
1 TAAATGATTTT-AAATTGAATTTTTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGC
* * * * * * * *
22623358 ATCGGGAAACGTGAAG-AAAAAGCCATACTTTGGCAAGAAAAGTCTATTTGTTGTCACTT-ATTC
65 ATCGGGAAACTTGAAGTGAAAA-CCATCCATTGACAAGAAAAGTCTATTTATAGTCA-TTCATGC
* * * *
22623421 CTTCGAAAGCCTTATTATTTGCTTTGAA-CGAATTTATAACTTTT
128 CTTC-AAAGCCTTATTACTCGCTTT-AAGTGAATTTAAAACTTTT
* * * *
22623465 TAAATGATTTTAAATTGAATTTCTTTTACATTTTTGGTTAAAACAAATCGTAATTTAATCTTTGC
1 TAAATGATTTTAAATTGAATTT-TTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGC
* * *
22623530 ATCGGTAAACTTGAAGTGAAAACCATCCATCGACAAGAAAAGTCCATTTATAGTCATTCATGCCT
65 ATCGGGAAACTTGAAGTGAAAACCATCCATTGACAAGAAAAGTCTATTTATAGTCATTCATGCCT
* * ** *
22623595 TCATACGCCTTATTACTTGCTTTAAGTGGCTTTATAACTTTT
130 TCA-AAGCCTTATTACTCGCTTTAAGTGAATTTAAAACTTTT
* * * * *
22623637 TAAATGATTTTAAAGTGAATTTGTTTACATTTTTAGTTAAAACAGGTCATAATTTGATGTTTTCA
1 TAAATGATTTTAAATTGAATTTTTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCA
* * * * * * * * * *
22623702 TTGGAAAACATGAAGCGAAAGCCAACCATTAATAAGAAAAGTCCATTTATAGTCACTCATTG-CT
66 TCGGGAAACTTGAAGTGAAAACCATCCATTGACAAGAAAAGTCTATTTATAGTCATTCA-TGCCT
* * *
22623766 TGAAAAGCCTTTTTACTCGCTTTAAGTGATTTTAAAACTTTT
130 T-CAAAGCCTTATTACTCGCTTTAAGTGAATTTAAAACTTTT
* ** * **
22623808 TAAATGATTTTGAATTGAATTTTTTTTTACATTTTCAGTTAAAAGAGATCATAATTTTTTGTTTG
1 TAAATGATTTTAAATTGAA--TTTTTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTG
* * * * *** * * *
22623873 CATCAGGAAA-TGTGAAGGGAAAATCTTTTGTTGACAAGAAAAGTCTATTTCTTGTCAGTCATGC
64 CATCGGGAAACT-TGAAGTGAAAACCATCCATTGACAAGAAAAGTCTATTTATAGTCATTCATGC
* * * *
22623937 CTTCAAGATCCTTATTACTCACTTTAAGTG-GTTTCAAAACTTTA
128 CTTCAA-AGCCTTATTACTCGCTTTAAGTGAATTT-AAAACTTTT
* * *
22623981 TAAATGATTTTAAATTGAA-TTTCTTATCATTTATGGTTAAAATAGATCATAATTTGATGTTTGC
1 TAAATGATTTTAAATTGAATTTTTTTA-CATTTTTGGTTAAAACAGATCATAATTTGATGTTTGC
* * ** *
22624045 ATTGGGAGACTTGAAGTGAAAGTCATCAATTGACAAGAAAAGTCTATTTATAG
65 ATCGGGAAACTTGAAGTGAAAACCATCCATTGACAAGAAAAGTCTATTTATAG
22624098 GCACCCATAC
Statistics
Matches: 516, Mismatches: 101, Indels: 32
0.80 0.16 0.05
Matches are distributed among these distances:
170 16 0.03
171 227 0.44
172 141 0.27
173 132 0.26
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.40
Consensus pattern (170 bp):
TAAATGATTTTAAATTGAATTTTTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCA
TCGGGAAACTTGAAGTGAAAACCATCCATTGACAAGAAAAGTCTATTTATAGTCATTCATGCCTT
CAAAGCCTTATTACTCGCTTTAAGTGAATTTAAAACTTTT
Found at i:22623993 original size:344 final size:343
Alignment explanation
Indices: 22623293--22624097 Score: 878
Period size: 344 Copynumber: 2.3 Consensus size: 343
22623283 TTGTAATAGC
*
22623293 ATAAATGATTTTAAAATTGAA--TGTTT-CTATTTTTTGGTTAAAACATATCATAATTTGATGTT
1 ATAAATGATTTT-AAATTGAATTTGTTTAC-A-TTTTTGGTTAAAACAGATCATAATTTGATGTT
* * * * * * * *
22623355 TGCATCGGGAAACGTGAAGAAAAAGCCATA-CTTTGGCAAGAAAAGTCTATTTGTTGTCACTTAT
63 TGCATTGGGAAACATGAAGAGAAAGCCA-ACCATTGACAAGAAAAGTCTATTTATAGTCACTCAT
* * *
22623419 TCCTTCGAAAGCCTTATTATTTGCTTTGAACGAATTTATAACTTTTTAAATGATTTTAAATTGAA
127 TCCTTCGAAAGCCTTATTACTCGCTTTGAACGAATTTAAAACTTTTTAAATGATTTTAAATTGAA
** * *
22623484 TTTCTTTTACATTTTTGGTTAAAACAAATCGTAATTTAATCTTTGCATCGGTAAACTTGAAGTGA
192 TTTCTTTTACATTTTCAGTTAAAACAAATCATAATTTAATCTTTGCATCGGTAAACTTGAAGGGA
* **
22623549 AAACCATCCATCGACAAGAAAAGTCCATTTATAGTCATTCATGCCTTCATACGCCTTATTACTTG
257 AAACCATCCATCGACAAGAAAAGTCCATTTATAGTCAGTCATGCCTTCATACGCCTTATTACTCA
*
22623614 CTTTAAGTGGCTTTATAACTTT
322 CTTTAAGTGGCTTTAAAACTTT
* * * * *
22623636 TTAAATGATTTTAAAGTGAATTTGTTTACATTTTTAGTTAAAACAGGTCATAATTTGATGTTTTC
1 ATAAATGATTTTAAATTGAATTTGTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGC
* * * * * *
22623701 ATTGGAAAACATGAAGCGAAAGCCAACCATTAATAAGAAAAGTCCATTTATAGTCACTCATTGCT
66 ATTGGGAAACATGAAGAGAAAGCCAACCATTGACAAGAAAAGTCTATTTATAGTCACTCATTCCT
* * * *
22623766 T-GAAAAGCCTTTTTACTCGCTTT-AAGTGATTTTAAAACTTTTTAAATGATTTTGAATTGAATT
131 TCG-AAAGCCTTATTACTCGCTTTGAA-CGAATTTAAAACTTTTTAAATGATTTTAAATTGAA-T
* * * ** *
22623829 TTTTTTTACATTTTCAGTTAAAAGAGATCATAATTTTTTGTTTGCATCAGG-AAA-TGTGAAGGG
193 TTCTTTTACATTTTCAGTTAAAACAAATCATAATTTAATCTTTGCATC-GGTAAACT-TGAAGGG
* * *** * * * *
22623892 AAAATCTTTTGTTGACAAGAAAAGTCTATTTCTTGTCAGTCATGCCTTCA-A-GATCCTTATTAC
256 AAAACCATCCATCGACAAGAAAAGTCCATTTATAGTCAGTCATGCCTTCATACG--CCTTATTAC
22623955 TCACTTTAAGTGG-TTTCAAAACTTT
319 TCACTTTAAGTGGCTTT-AAAACTTT
* * *
22623980 ATAAATGATTTTAAATTGAATTT-CTTATCATTTATGGTTAAAATAGATCATAATTTGATGTTTG
1 ATAAATGATTTTAAATTGAATTTGTTTA-CATTTTTGGTTAAAACAGATCATAATTTGATGTTTG
* * * * * *
22624044 CATTGGGAGACTTGAAGTGAAAGTCATCAATTGACAAGAAAAGTCTATTTATAG
65 CATTGGGAAACATGAAGAGAAAGCCAACCATTGACAAGAAAAGTCTATTTATAG
22624098 GCACCCATAC
Statistics
Matches: 381, Mismatches: 68, Indels: 25
0.80 0.14 0.05
Matches are distributed among these distances:
342 12 0.03
343 148 0.39
344 218 0.57
345 3 0.01
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.40
Consensus pattern (343 bp):
ATAAATGATTTTAAATTGAATTTGTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGC
ATTGGGAAACATGAAGAGAAAGCCAACCATTGACAAGAAAAGTCTATTTATAGTCACTCATTCCT
TCGAAAGCCTTATTACTCGCTTTGAACGAATTTAAAACTTTTTAAATGATTTTAAATTGAATTTC
TTTTACATTTTCAGTTAAAACAAATCATAATTTAATCTTTGCATCGGTAAACTTGAAGGGAAAAC
CATCCATCGACAAGAAAAGTCCATTTATAGTCAGTCATGCCTTCATACGCCTTATTACTCACTTT
AAGTGGCTTTAAAACTTT
Found at i:22625459 original size:40 final size:37
Alignment explanation
Indices: 22625376--22625457 Score: 137
Period size: 37 Copynumber: 2.2 Consensus size: 37
22625366 TAATGTTGTG
* * *
22625376 TGATGATGTTGAAGTGTGCGAGTAGGGAGTGCACACA
1 TGATGATGTTAAAGTGTGCAAGTAGGGAGTCCACACA
22625413 TGATGATGTTAAAGTGTGCAAGTAGGGAGTCCACACA
1 TGATGATGTTAAAGTGTGCAAGTAGGGAGTCCACACA
22625450 TGATGATG
1 TGATGATG
22625458 ATATTGCATT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.29, C:0.11, G:0.34, T:0.26
Consensus pattern (37 bp):
TGATGATGTTAAAGTGTGCAAGTAGGGAGTCCACACA
Found at i:22627378 original size:171 final size:170
Alignment explanation
Indices: 22626513--22635183 Score: 7101
Period size: 171 Copynumber: 50.6 Consensus size: 170
22626503 GTGACACATA
* * * * * *
22626513 CCTTCAAAAGCCTTGTTACTTGCTTGAAGTTG-TTTAGAACTTTTTAAATGATTTTGAATT---T
1 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTTTAAATGATTTTAAATTGAAT
** * * * * *
22626574 TTTTTTACATTTTCAGTTAAAAAACATTATAATTTGCTGTTTGCATT-GAGAGACGTGAAGCAAA
66 TTTTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTGGA-AAACGTGAAGCAAA
* * * * * *
22626638 AGTCATCTATTGACAAGAAAAGTCTATTTATAGGCACTAATA
130 A-CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * *
22626680 CCTTCAAAAGCCTTGTTACTCACTTTAAGTAGATTTAGAACTTTTTAAATGATTTTGAATT-AAT
1 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTTTAAATGATTTTAAATTGAAT
* * * * * * *
22626744 TTGCTTTACA-TTTTGGTTAAAAAAAATCATAATTTGATGTTTGCACATGG-AAACATGAGGAAA
66 TT-TTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCA-TTGGAAAACGTGAAGCAA
* *
22626807 AAGCCATCAATTGACAAGAAAAGTCCAGTTATAGTCACTCATG
129 AA-CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * *
22626850 CCTTTGAAAGCCTTGTTATTCTCTTTAAGTGGATTCATAACTTTATAAATGATTTTAAATTGAAT
1 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTTTAAATGATTTTAAATTGAA-
* * * * ** *
22626915 TTTTTTTTCATTTTTGGTTAAAGCAAATCATAACTTG-TCGTTTGCATCAGAAAACGTGAAGAAA
65 TTTTTTTACATTTTTGGTTAAAACAGATCATAATTTGAT-GTTTGCATTGGAAAACGTGAAGCAA
* * *
22626979 AAGCCATCCATTTACAAGAAAAATCCATTTATAGTCACTCATT
129 AA-CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * *
22627022 CTTTC-ATACGCCTTGTTACTTGCTTTAAGTGGATTTATAACTTTTTAAATGATTTTAAATTAAA
1 CCTTCGA-AAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTTTAAATGATTTTAAATTGAA
* * * *
22627086 TTTTATTTTACATTTTTAGCTAAAATAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCG
65 -TTT-TTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTGGAAAACGTGAAGC-
* * * *
22627151 AAAGCCATCCATTGACAAGAAAAGTCTATTTACAAG-CACTCATA
127 AAAACCATCCATTGACAAGAAAAGTCCATTTA-TAGTCACTCATG
* * * *
22627195 CCTTCAAAAGCCTTGTTACTCACTTTAAGTGGTTTTA-ACACTTTTTAAATGATTTTGAATTAAA
1 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATA-ACTTTTTAAATGATTTTAAATTGAA
* * * *
22627259 TTTTTTTACATTTTTGATTAAAAAAGATCATAATTTGATGTTTTCATTGGAAAATGTGAAGCTAA
65 TTTTTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTGGAAAACGTGAAGC-AA
* * ** ** * *
22627324 AACCTTCCGTTGATGAGGGAAGTCCAGTTACAGTCACTCATG
129 AACCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * *
22627366 CCTTCGAAAGCCTTGGTATTCTCTTTAAGTGGATTTATAACTTCTTAAATGATTTTAAATTGAAT
1 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTTTAAATGATTTTAAATTGAAT
* * * * * *** * * *
22627431 TATTTTT-CATTTTTGGTCAAAGCAGATTATAACTTT-TTGTTTTCATCAAAAAAACATTAAGAA
66 T-TTTTTACATTTTTGGTTAAAACAGATCATAA-TTTGATGTTTGCAT-TGGAAAACGTGAAGCA
* *
22627494 AAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATT
128 AAA-CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * *
22627538 CCTTCGTATGCCTTGTTACTTGCTTTAAGTGGATTTATAACTTTTTAAATGATTTTAAATT-AAT
1 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTTTAAATGATTTTAAATTGAAT
* * * * * *
22627602 TGTTTTACATTTTTTGCTAAAACAGATCATAATTTGATGTTTGTATCAGG-AAACATGAAGCGAA
66 TTTTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCAT-TGGAAAACGTGAAGC-AA
* * * * * * * *
22627666 AGCTAACCATTAATAAGAAAAGTCTATTTTTAGTCAGTCATG
129 AACCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * *
22627708 GCTT-GAAAAGTCTTGTTACTTGCTTTAAGTGGTTTTAGAACTTTTTAAATGATTTTGAATTGGA
1 CCTTCG-AAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTTTAAATGATTTTAAATTGAA
** * * * * *
22627772 TTTTTTTACATTTACGATTAAAAAAGATCATTAA-TTGATGTTTGCA-TCGAGAAACATGAGGCA
65 TTTTTTTACATTTTTGGTTAAAACAGATCA-TAATTTGATGTTTGCATTGGA-AAACGTGAAGC-
* *** * * * *
22627835 AAAACCTTTTGTTAACAAGAAATG-CCTAGTTATAGTCACTCATA
127 AAAACCATCCATTGACAAGAAAAGTCC-ATTTATAGTCACTCATG
* * * *
22627879 CCTTCTAAAGCCTTGTTACTCGCCTTAAGTGGTTTTAGAAC-TTTTAAATGATTTTGAATT-AAC
1 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTTTAAATGATTTTAAATTGAA-
* * ** * *
22627942 TTTTTTTTACATTTTTTGATTAAAAAAGATCATAATTTGATGTTTGCA-TCAAGAAACATGAAGA
65 -TTTTTTTACA-TTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTGGA-AAACGTGAAGC
* *
22628006 AAAAGCCATCCATTGACAAGAAAAGTCCAGTTATAGTCACCCATG
127 AAAA-CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * *
22628051 GCTTGGAAAGCCTTGTTACTCACTTTAAGTGGTTTTAGAACTTTTTAAATGATTTTGAATTAAAT
1 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTTTAAATGATTTTAAATTGAA-
* *** * * *
22628116 TTTTTTTGGCATTTCCAGTTAAAAGAGATCATAATTTGATGTTTGCATTGGGAAATGTGAAG-AG
65 TTTTTTT-ACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTGGAAAACGTGAAGCA-
** *
22628180 AAAGCCATCCATTGATGAGAAAAGTCCAATTATAGTCACTCATG
128 AAA-CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * * *
22628224 CCTTCGAAAGCTTTATTATTCTCTTTAAGTGGATTTATAACTTTATAAATGA-TTTAAGTTGAAT
1 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTTTAAATGATTTTAAATTGAA-
* * * ** * *
22628288 TTTTTTTTCATTATTGG-TAAAACAGATCATAGTTTGATGTTTGCATCAGAGAACGTGAAGAAAA
65 TTTTTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTGGAAAACGTGAAGCAAA
*
22628352 AGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATT
130 A-CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * *
22628394 CCTTC-ACACGCCTTGTTACTTGCTTTAAGTGGATTTATAACTTTTTAAATGATTTTAAATTAAA
1 CCTTCGA-AAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTTTAAATGATTTTAAATTGAA
* * * *
22628458 TTTGTTTTACATTTGTAGCTAAAACAGATCATAATTTGATGTTTGCATAGGGAAAA-GTGAAGCA
65 TTT-TTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCAT-TGGAAAACGTGAAGCA
* * *
22628522 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGGCACTCCTA
128 AAA-CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * * * *
22628566 CCTTCAAAACCCTTGTTACTCGCTTTTAGTGATTTTAGAACTTTCTAAACGATTTTGAATT-AAT
1 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTTTAAATGATTTTAAATTGAA-
** * * * * *** *
22628630 TTTTTTTTACATTTTCAGCTAAAACAAATCATAATTTAATGGTTTGCATCAGG-AAACAAAAAGA
65 -TTTTTTTACATTTTTGGTTAAAACAGATCATAATTTGAT-GTTTGCAT-TGGAAAACGTGAAGC
* * *
22628694 AAAAGCCATCCATTGACAACAAAAGTCTAGTTATAGTCACTCATG
127 AAAA-CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * * *
22628739 CCTTTGAAAGCCTTATTATTCTCTTTAAGTTGATTTATAACTTTATAAATGATTTTAAATTGAAT
1 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTTTAAATGATTTTAAATTGAA-
* * * * * * *
22628804 TTTTTTTTCATTTTTGGTTAAAGCAGATAATAATTTGTTGTTTGCATTAGAAAATGTGAAGAAAA
65 TTTTTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTGGAAAACGTGAAGCAAA
* * *
22628869 AGCCATCTATTGACAAGAAAAGTTCATTTATAGTCACCCATG
130 A-CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * * ***
22628911 GCTTGGAAAGCCTTGTTACTCGTTTTAAGTTGTTTTAGAACTATTTAAATGATTTTGGCTT-AAT
1 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTTTAAATGATTTTAAATTGAA-
* * * * *
22628975 TTGTTTTTACATTTGTGATTAAAAAAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGAAA
65 TT-TTTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTGGAAAACGTGAAGCAA
** * *
22629040 AAGCCATCCATTGATGAGAAAAGTCTAGTTATAGTCACTCATG
129 AA-CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * * *
22629083 CCTTC-ATATGACTTGTTACTTGCTTTAGGTGGATTTATAACTTATTAAATTATTTTAAATT-AT
1 CCTTCGA-AAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTTTAAATGATTTTAAATTGA-
* * * * * * *
22629146 TTTTTTTTTACA-TTTTGGCTAATACAGATAATAATTTGATGTTTGCA-TCGAGAAACATGAAGT
64 -ATTTTTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTGGA-AAACGTGAAGC
* * ** *
22629209 AAAGGCAATCCATCAACAAGAAAAGTCTATTTATAGTCACTCATG
127 AAA-ACCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * *
22629254 CCTTC-ATACGCCATGTTACTTG-TTATAAGTGGATTTATAACTTTTTAAATGATTTTAAATTG-
1 CCTTCGA-AAGCCTTGTTACTCGCTT-TAAGTGGTTTTATAACTTTTTAAATGATTTTAAATTGA
*
22629316 ATTTCTTTTACATTCTTGGTTAAAACAGATCATAATTTGATGTTTGCATT-GAGAAACGTGAAGC
64 ATTT-TTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTGGA-AAACGTGAAGC
* * * * * *
22629380 GAAAGCTAACCATTAATAAGAAAAATCCATTTATAGTCACTCATG
127 -AAAACCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * * * *
22629425 GCTTGGAAAGCCTTATTACTCACTTTAAGTGGATTTCTAACTCTTTAAATGATTTTAACTTGAAT
1 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTTTAAATGATTTTAAATTGAAT
* * * * *
22629490 TTCTTTTACATTTTTAGTTAAAACAAATCATAGTTTGATGTTTGCATTGGGAAATGTGAAAG-AA
66 TT-TTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTGGAAAACGTG-AAGCAA
* * ** *
22629554 AAGCTATCCGTTGACAAGAAAAGTATATTTATAGTCACTAATG
129 AA-CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * * *
22629597 CCTTCAAAAGCCTAT-TAACTCGCTTCAGGTGGTTTTATAA-TCTTATAAATGATTTCAATTTGA
1 CCTTCGAAAGCCT-TGTTACTCGCTTTAAGTGGTTTTATAACT-TTTTAAATGATTTTAAATTGA
* * * * *
22629660 ATTTGTTTT-CATTTTTGGCTAAAACAGATCATAGTTTGTTGTTTTCATCAT-G-AAACATGAAG
64 ATTT-TTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCAT--TGGAAAACGTGAAG
* * *
22629722 CAAAACCCATCCATAGACAAGAAAAATCCATTTATAGTCACTCATA
126 CAAAA-CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * * ** * * * * *
22629768 CCCTCGAAAGCCTAGTTAGTTGCCTTAAATGGTTTTATAACCGTATAAATAATTTGAAAGATGGA
1 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTTTAAATGATTTTAAA-TTGAA
* * * * * * *
22629833 TTTTTCT-C-TTTTTGCTTAAAACATACCATAATTTGATGTTTTG-A-TCGAGAAACATGAAGAA
65 TTTTTTTACATTTTTGGTTAAAACAGATCATAATTTGATG-TTTGCATTGGA-AAACGTGAAG-C
** * * *
22629894 AAAACCATATATTGACAAGAAAAGTCTATTTATAGTCACTTATA
127 AAAACCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * * *
22629938 CCATCGAAAGCCTTATTACTTGCTTTAAATGGATTTATAACTATTTACATGATTTTAAATT-AAT
1 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTTTAAATGATTTTAAATTGAAT
* *
22630002 GTTTTTTACATTTTTGGTTAAAACAGATCATAATTTGATCTTTGCATTGGGAAACGTGAAGCGAA
66 -TTTTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTGGAAAACGTGAAGC-AA
** *
22630067 TGCCATCCATTGACAACAAAAGTCCATTTATAGTCACTCATG
129 AACCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * *
22630109 CCTTC-ATATGCCTTGCTACTTGCTTTAGGTGGATTTATAACTTATTAAATGATTTTAAATTGAT
1 CCTTCGA-AAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTTTAAATGATTTTAAATTGA-
* * * * * * *
22630173 TTTTTTTTTTACATTTTTGGTTAATACAGATAATACTTTGATGTTTGCA-TCGAGAAACATGGAG
64 --ATTTTTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTGGA-AAACGTGAAG
* *** *
22630237 CGAAAGCCATCCACCAACAAGAAAAGTCTATTTATAGTCACTCATG
126 C-AAAACCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * *
22630283 CCTTC-ATACA-CCTTATTACTTG-TTCTAAATGGATTTATAACTTTTTAAATGATTTTAAATT-
1 CCTTCGA-A-AGCCTTGTTACTCGCTT-TAAGTGGTTTTATAACTTTTTAAATGATTTTAAATTG
* * * *
22630344 TATTTTTTTACATTCTTGGTTAAAACAGATCACAATTTGATGTTTGCATT-GAGAAACGTGAAAC
63 AATTTTTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTGGA-AAACGTGAAGC
** * * * * * *
22630408 AAAAGTAGACCATTAATAAGAAAAATCTATTTATAGTCGCTCATG
127 AAAACCA-TCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * * *
22630453 GCTTGGAAAGCCTTGTTACTCACTTTAAGTGGATTTCTAACTCTCTAAATGATTTTAAATTGAAT
1 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTTTAAATGATTTTAAATTGAAT
* * * * *
22630518 TTCTTTTACATTTTTAGTTAAAACAAATCTTAGTTTGATGTTTGCATTGGAAAATGTGAAAG-AA
66 TT-TTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTGGAAAACGTG-AAGCAA
** *
22630582 AAGCCATCCATTGACAAGAAAAGTTTATTTATAGTCACTAATG
129 AA-CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * * * *
22630625 TCTTCAAAAGCCTAT-TAACTCGCTTCAAGTGGTTTTATAA-TCATATAAATGATTTCAATTTGA
1 CCTTCGAAAGCCT-TGTTACTCGCTTTAAGTGGTTTTATAACT-TTTTAAATGATTTTAAATTGA
* * * * ** * *
22630688 ATTTGTTTT-CATTTTTGGCTAAAACAGAACATAGTTTGTTGTTTGCA-TCAAGAAACATGAGGC
64 ATTT-TTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTGGA-AAACGTGAAGC
*
22630751 AAAAACCATCCATTGACAAGAAAACTCCATTTATAGTCACTCATG
127 -AAAACCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * * * * * *
22630796 CCCTCGAAAGCCTAGTTAGTTGCTTTAAATGATTTTATAA-TCGTATAAATTATTTGAAAATTGA
1 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT-TTTTAAATGATTT-TAAATTGA
* * * * * *
22630860 ATTTTTCT-CTTTTTTGGTTAAAACATATCATAATTTGATGTTTACATTGGGAAACGTGAAACAA
64 ATTTTTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTGGAAAACGTGAAGCAA
* * * ** *
22630924 AAGGCATACATTGATAAGAAAAGTTTATTTATAGTCACTCATA
129 AA-CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * *
22630967 CCTTCGAAAGCCTTATTACTCACTTTAAGTGGATTTATAACTTTTTACATGATTCTAAATTGAAT
1 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTTTAAATGATTTTAAATTGAA-
* * ** *
22631032 TTTTTTTTGTTTACATTTTTGGTTAAAACAGATCGTAATTTGATTTTTGCATAAGAAAACATGAA
65 ----TTTT-TTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTGGAAAACGTGAA
** * * *
22631097 GCAAAGGGCAACCATTAATAAGAAAAGTCCATTTATAGTCACTCATG
125 GCAAA-ACCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * * *
22631144 GCTTGGAAAGCCTTATTACTCGCTTTAAGTGGTTTTAAAACTTTTTGAATGATTTTGAATTGGAT
1 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTTTAAATGATTTTAAATTGAAT
* * *
22631209 TTTTTTATATTTTTGGTTAAAATAGATCATAATTTGATGTTTCCATTAGG-AAACGTGAAGCTAA
66 TTTTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATT-GGAAAACGTGAAGC-AA
* * * * * * *
22631273 AACCTTTCATTGATGAA-AAAAGTCCAATTACAATCACTCATA
129 AACCATCCATTGA-CAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * * *
22631315 CCTTCGCAAGCCTTATTATTCTG-TTTTAGTGGATTTATAACTTTATAAATAATTTTAAATTG-A
1 CCTTCGAAAGCCTTGTTACTC-GCTTTAAGTGGTTTTATAACTTTTTAAATGATTTTAAATTGAA
* * * * * * * *
22631378 TTTTTTTTCATATTTGGTTAAAGCAGATCATAACTTGTTGTTTGCATTAGAAAACATGAAGAAAA
65 TTTTTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTGGAAAACGTGAAGCAAA
* * *
22631443 AGCCATCCATTGAAAAGAAAAGTCCAGTTATAGTAACTCATG
130 A-CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* ** * * * * *
22631485 CCTTCGAAAGCCTTATTACTTACTTTAAGTGGATTTCTAACTCTTTATATGATTTTAAAATGAAT
1 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTTTAAATGATTTTAAATTGAAT
* * * *
22631550 TTTTTTATATTTTTGGTTAAAACATATCATAATTTGCTGTTTGCATTGGGAAACGTGAAGCAAAA
66 TTTTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTGGAAAACGTGAAGCAAAA
* *
22631615 GCCAACCATTGAAAAGAAAAGTCCATTTATAGTCACTCATG
131 -CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * *
22631656 GCTTGGAAAGCCTTGTTACTCGCTTTAAATGATTTT-TGAACTTTTTAAATGATTTTTAATTGGA
1 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTAT-AACTTTTTAAATGATTTTAAATTGAA
* * * * *
22631720 TTTTTTTACATTTTCT-ATTAAAAAAGATCATATTTTGATGTTT-CTTTTGGGAAACGTGAAGCT
65 TTTTTTTACATTTT-TGGTTAAAACAGATCATAATTTGATGTTTGC-ATTGGAAAACGTGAAGC-
* * * * * * * * *
22631783 AAAATCTTTCATTAATAA-AAAAGTTTCAATTACAGTCACTCATA
127 AAAACCATCCATTGACAAGAAAAG-TCCATTTATAGTCACTCATG
* * * * * *
22631827 CCTTCGAAAGCCTTGTTATTCTCTTTAAGTGGATTTATAACTTTATAAATGATTTAAAATT-CAT
1 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTTTAAATGATTTTAAATTGAAT
* * * * * *
22631891 TTTTTT-CATTTGTGGTTAAAGCAGATCATAACTTGTTGTTTGCATTGGAAAACATG-AGAAAAA
66 TTTTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTGGAAAACGTGAAG-CAAA
* * * *
22631954 ACCATCCATTGACAAGAAAATTCCAATTCTAGTAACTCATG
130 ACCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * * * *
22631995 CCTTTGAAAGCCTTGTTACTCACTTTAAGTGGATTTCTAACTCTTCAAATGATTTCAATTTGAAT
1 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTTTAAATGATTTTAAATTGAAT
* * * * * * * *
22632060 TTGTTTACATTTTTGGTGAAAAAAGATCATAGTTTGTTGTTTACATCAGGACAA-GTGAAGCAAA
66 TTTTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCAT-TGGAAAACGTGAAGCAAA
* * * * * *
22632124 AGCCATCTATTGACAAGAAAATTCTATTTATTGTCACTAATT
130 A-CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * * *
22632166 CCTTCAAAAGCCTAT-TTAGTCGCTGTAAATGGTTTTATTA-TTGTATAAATGATTTAAAATTGA
1 CCTTCGAAAGCCT-TGTTACTCGCTTTAAGTGGTTTTATAACTT-TTTAAATGATTTTAAATTGA
* * * * * * *
22632229 ATTTTTCTA-TTTTTTTGTTAAAACAGATCATAATTTGATATTTGCATTAGG-AAACATAAAGAA
64 ATTTTTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATT-GGAAAACGTGAAGCA
* * *
22632292 AAAGCCATACATTGACATGAAAAGTCTATTTATAGTCACTCATG
128 AAA-CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
** * * * * * *
22632336 ATTTCGAAAGCCTTATTACTTGCTTTAAGTGGATTTATAACCTTTTACATGATTTTAAATTGCAT
1 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTTTAAATGATTTTAAATTGAAT
* * * * * * *
22632401 TTTTTTACATTTTTGGTTAAAATAGATCGA-AACTTGATGCTTACATTGGGAAACATGAAACAAA
66 TTTTTTACATTTTTGGTTAAAACAGATC-ATAATTTGATGTTTGCATTGGAAAACGTGAAGCAAA
* * *
22632465 AGCCATCAATTGACAAGAAAAGTTCGTTTATAGTCACTCATG
130 A-CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * *
22632507 ACTTC-ATATGCCTTGTTACTTGCTTTAAGTGGATTTATAACTTTTTAAATGATTTTAAATTAAA
1 CCTTCGA-AAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTTTAAATGATTTTAAATTGAA
* * *
22632571 TTTTTTGT---TTTCTTGGTTAAAACATATCATAATTTGATGTTTACATTGGGAAACGTGAAGCG
65 TTTTTT-TACATTT-TTGGTTAAAACAGATCATAATTTGATGTTTGCATTGGAAAACGTGAAGC-
* * * *
22632633 AAAGCCAACCATTAATAAGAAAAGTCCATTTATAGTCACTCATG
127 AAAACCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * *
22632677 GCTTGGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTAGAACTTTTTAAATGATTTTGAATTCGAT
1 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTTTAAATGATTTTAAATT-GAA
* * * *
22632742 TTTATTTTTCATTTTT-GATAAAAAAGATCATAATTTGATGTTTGCATCAGG-AAACGTGAAGCA
65 TTT-TTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCAT-TGGAAAACGTGAAGCA
* *** * * *
22632805 AAACCTTTTGTTGACAAGAAAAGTCTAGTTATAGTCATTCATG
128 AAACCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * *
22632848 CCTTTGAAAGCCTTGTTATTCTCTTT-AGTGGATTTATAACTTTTTAAATGATTTTAAATTGAAC
1 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTTTAAATGATTTTAAATTGAA-
* * * * ** * * * *
22632912 TCTTTTT-CAATCTTGGTTAAAACAGATCATAATTTAACATGTGCAATGGGAGACGTGAAGCAAA
65 TTTTTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTGGAAAACGTGAAGCAAA
* * * *
22632976 AGCCATCCATTGACAAGAAATGTCTATTTATAGGCACTCATATC
130 A-CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTC--ATG
* *
22633020 CTCATGATTGGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTAGAACTTTTTCAAA-GATTTTAAA
1 C-C----TTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTTT-AAATGATTTTAAA
* * ** *
22633084 TTGAACTTTTTTTTTACATTTTTGGTTAAAACATATCATAAGTTGATGTTTGCA-TCAAGAAACA
60 TTGAA---TTTTTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTGGA-AAACG
* * * * *
22633148 TGAAGTGAAAGCCAACCA-CGAACAAGAAAAGTCCATTTATAGTCATTCATG
121 TGAAG-CAAAACCATCCATTG-ACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * * * * *
22633199 GCTTGGAAAGCCTTGCTAGTCACTTTAAGTGGTTTTAGAACTCTTTAAATGATTTTCAATTGAAC
1 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTTTAAATGATTTTAAATTGAAT
*** * * *
22633264 TTTTTTACATTTTCAATTAAAAAAGATCATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAA
66 TTTTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTGGAAAACGTGAAGC-AAA
* * * * * *
22633329 ACCTTTCGTTGACAAGAAAAGTCTAATTATATTCACTCATG
130 ACCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * **
22633370 CCTTTGAAAGCCTTGTTATTCTCTTTACGTGGATTTATAACTTTAGAAATGATTTTAAATTGAAT
1 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTTTAAATGATTTTAAATTGAAT
* * * * *
22633435 ATTTTTT-CA-TTTTAGTTAAAACAGGTCAT-ATCTTGTTGTTTGCAATGGAAAACGTGAAGAAA
66 -TTTTTTACATTTTTGGTTAAAACAGATCATAAT-TTGATGTTTGCATTGGAAAACGTGAAGCAA
* * * * *
22633497 AAGCCATCTATTGACAAGAAAAGTCTAGTTATAGTAACCCATG
129 AA-CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * * *
22633540 CCTTCGAAAGCCTTATTACTCACTTTAAGTGGATTTCTAGCTCTTTAAATGATTTCAAATTGAAT
1 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTTTAAATGATTTTAAATTGAAT
** *
22633605 TTCTTTTACATTTTTAATTAAAACAGATCATAATTTGATGTTTGCATTAGGAAATA--TGAAACA
66 TT-TTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATT-GGAAA-ACGTGAAGCA
* * * *
22633668 AAAGCCATCCACTGACAAGAAAAGTCTATTTATAGTCATTTATG
128 AAA-CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * *
22633712 CCTTCAAAAGCCTAT-TTACT-GACTTCAAATGGTTTTATAA-TCTTATAAATGA-TTTCAATTC
1 CCTTCGAAAGCCT-TGTTACTCG-CTTTAAGTGGTTTTATAACT-TTTTAAATGATTTTAAATT-
* * *
22633773 GAATTTGTTTT-CATTTTTGGTTAAAACAGATCATAGTTT-ATTGTTTGCATTGGGAAACATGAA
62 GAATTT-TTTTACATTTTTGGTTAAAACAGATCATAATTTGA-TGTTTGCATTGGAAAACGTGAA
* * *
22633836 GTGAAAACCATCCATTGAAAAGAAAAGTCCATTTATAGACACTCATG
125 G-CAAAACCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * *
22633883 CCCTCGAAAGCCTAT-TTAGTCGCTTTAAATAGTTTTATAA-TCATATAAATGATTTTAAAATTG
1 CCTTCGAAAGCCT-TGTTACTCGCTTTAAGTGGTTTTATAACT-TTTTAAATGATTTT-AAATTG
** * * * * * *
22633946 AA-TTTTTCCCTTTTTTGGTTAAACCAGATCATAATGTT-ATGTTTGCATCGAAAAATGTGAAGA
63 AATTTTTTTACATTTTTGGTTAAAACAGATCATAAT-TTGATGTTTGCATTGGAAAACGTGAAGC
* * *
22634009 AAAAGGCATACATTGACAAGAAAAGTCTA-TTATAG----TCATG
127 AAAA-CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * *
22634049 CCTTC-ATACA-CCTTGTTACTTGTTTTAAGTGGATTTATAACTTTTTAAATGATTTTAAATTGA
1 CCTTCGA-A-AGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTTTAAATGATTTTAAATTGA
* * * *
22634112 ATTTTTTTTACATTTTTGGATAAAACAGATCGTAATTTGATGTTTGCCTTAGG-AAACATGAAGT
64 A-TTTTTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATT-GGAAAACGTGAAG-
* * * *
22634176 AAAAACCAACCATTAACAAGAAAAATCCATTTATAGTCACTCATG
126 CAAAACCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * *
22634221 GCTTGGAAAGCCTTGTTACTCACTTTAAGTGGTTTTAAAACTTTTTAAATGATTTTGAATTGGAT
1 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTTTAAATGATTTTAAATT-GA-
* ** * * **
22634286 TTTTTTTTTTACATTTTCAGTTAAAAAATATCATAATTTGATGTTTGCA-TCAAGAAACGT-ATA
64 --ATTTTTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTGGA-AAACGTGA-A
* * ** * * *
22634349 GCTAAAACCTTCCCTTGACGGGAAAAGTCTAGTTACAGTCACTCATG
125 GC-AAAACCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * * *
22634396 CCTACCAAAGCCTTATTATTCTCTTTAAGTGGATTTATAACTTTATAAATGATTTTAAATTGAAT
1 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTTTAAATGATTTTAAATTGAAT
* * * * * * ** **** **
22634461 TTTTTT-TATTTTTGGTTAAAGCAGATCATAACTTGTTATTTGTA-TCAAAAAAAAAAATTAAAA
66 TTTTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTGGAAAACGTGAA-GCAAA
* * *
22634524 AGCCATCCATT-AGCAAGAAAAGTACAGTTATAGTAACTCATG
130 A-CCATCCATTGA-CAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * * * *
22634566 CTTTCGAAAGCATTGTTACTTGCTTTAAGTTGATTTCTAACTCTTTAAATGATTTTAACTTGAAT
1 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTTTAAATGATTTTAAATTGAAT
* * * * * *
22634631 TTCTTTTACATTTTTAGTTAAAATAGATCATAATTTAATGTTTGCATTGGGAAACTTGAAACAAA
66 TT-TTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTGGAAAACGTGAAGC-AA
* * *
22634696 AACCATCCATTGACAAAAAAAGTCTATTTATAGTCACTAATG
129 AACCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * * *
22634738 CCTTCAAAAGCCTAT-TTACTTGCTTTAAATAGTTTTATAA-TCTTATAAATGATTTCAATTTGA
1 CCTTCGAAAGCCT-TGTTACTCGCTTTAAGTGGTTTTATAACT-TTTTAAATGATTTTAAATTGA
* * * * ** * *
22634801 ATTTATTT--ATTTTTTGTTAAAACAGATCATAGTTTGTTGTTTGCATCAGAAAAAGTGAAGTAA
64 ATTTTTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTGGAAAACGTGAAG-CA
* *
22634864 AAACCATCCATTGACAAGTAAAGTCCATTTATAGTCTCTCATG
128 AAACCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * ** *
22634907 CCCTT-GAAAG-CTTAATTAGTCACTTTAAATGGTTTTATAACCGTATAAATGATTTTAAAATT-
1 -CCTTCGAAAGCCTT-GTTACTCGCTTTAAGTGGTTTTATAACTTTTTAAATGATTTT-AAATTG
* * * *
22634969 -ATTTTTTTTCCTTTTCTGGTTAAAATAGATCATAATTTGATGTTTGCATAAGG-AAACGTGAAG
63 AATTTTTTTACATTTT-TGGTTAAAACAGATCATAATTTGATGTTTGCAT-TGGAAAACGTGAAG
* * * * *
22635032 -AAAGAGGCATACATTGACAAGAAAAGTCTATTTGTAGTCACTCATA
126 CAAA-A-CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * *
22635078 CCTTTGAAAGCCTTATTACTTGCTTTAAGTGGATTTATAACTTTTTAAATGAATTTAAATTG-AT
1 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTTTAAATGATTTTAAATTGAAT
* * *
22635142 TTTTTTATATTCTTGGTTAATACAGATCATAATTTGATGTTT
66 TTTTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTT
22635184 ACATCAAGAA
Statistics
Matches: 6850, Mismatches: 1382, Indels: 541
0.78 0.16 0.06
Matches are distributed among these distances:
165 10 0.00
166 46 0.01
167 94 0.01
168 142 0.02
169 261 0.04
170 1471 0.21
171 2272 0.33
172 1457 0.21
173 474 0.07
174 215 0.03
175 135 0.02
176 2 0.00
177 156 0.02
178 32 0.00
179 5 0.00
180 8 0.00
181 67 0.01
182 3 0.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (170 bp):
CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTTTAAATGATTTTAAATTGAAT
TTTTTTACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTGGAAAACGTGAAGCAAAA
CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
Found at i:22641798 original size:43 final size:43
Alignment explanation
Indices: 22641750--22641911 Score: 202
Period size: 43 Copynumber: 3.8 Consensus size: 43
22641740 ATCGTCATGT
* * *
22641750 GCACTCCCTACTCGCACATAGCTAGGTCATTATTGGCTTATGC
1 GCACTCCCTACTCGCACATAGCTGGGTCATCATCGGCTTATGC
* * * *
22641793 ACACTCCTTACTTGCACATAGCCGGGTCATCATCGGCTTATGC
1 GCACTCCCTACTCGCACATAGCTGGGTCATCATCGGCTTATGC
* * *
22641836 GCACTCCCTACTCGCACATAG-TCGGGTCATCATCAGCTCATGT
1 GCACTCCCTACTCGCACATAGCT-GGGTCATCATCGGCTTATGC
22641879 GCACTCCC-ACATCGCACATAGCTGGGTCATCAT
1 GCACTCCCTAC-TCGCACATAGCTGGGTCATCAT
22641912 TATCACACAA
Statistics
Matches: 102, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
42 2 0.02
43 99 0.97
44 1 0.01
ACGTcount: A:0.22, C:0.33, G:0.19, T:0.27
Consensus pattern (43 bp):
GCACTCCCTACTCGCACATAGCTGGGTCATCATCGGCTTATGC
Found at i:22642774 original size:4 final size:4
Alignment explanation
Indices: 22642735--22642762 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
22642725 TTTTTTTCTT
22642735 TTTC TTTC TTTC TTTC TTTC TTTC TTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC
22642763 CCGTTTCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTC
Found at i:22643065 original size:35 final size:35
Alignment explanation
Indices: 22642951--22643100 Score: 141
Period size: 34 Copynumber: 4.3 Consensus size: 35
22642941 TTTCTCTCTC
* * *
22642951 AAATTTGTAGTAAAACTTTTTCTTTTTCCT-CTCA
1 AAATTTGCAGCAAAACTTTTTCTATTTCCTACTCA
*
22642985 AAATTTGCAACAAAACTCTTTT-T-TTTCCCTA-TCA
1 AAATTTGCAGCAAAACT-TTTTCTATTT-CCTACTCA
* *
22643019 AAATTTACAGCAAAACTATTTCTATTTCCTACT-A
1 AAATTTGCAGCAAAACTTTTTCTATTTCCTACTCA
* *
22643053 AAATTTTGCAGCAAAGCTTTTTCTATTTCCTTCT-A
1 AAA-TTTGCAGCAAAACTTTTTCTATTTCCTACTCA
*
22643088 CAAATTTACAGCA
1 -AAATTTGCAGCA
22643101 CAAGGCCTCT
Statistics
Matches: 97, Mismatches: 11, Indels: 15
0.79 0.09 0.12
Matches are distributed among these distances:
33 6 0.06
34 45 0.46
35 43 0.44
36 3 0.03
ACGTcount: A:0.32, C:0.21, G:0.05, T:0.42
Consensus pattern (35 bp):
AAATTTGCAGCAAAACTTTTTCTATTTCCTACTCA
Found at i:22643470 original size:2 final size:2
Alignment explanation
Indices: 22643463--22643488 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
22643453 CTTTCTCTTT
22643463 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
22643489 CTTTTATTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:22645472 original size:26 final size:24
Alignment explanation
Indices: 22645418--22645476 Score: 75
Period size: 23 Copynumber: 2.4 Consensus size: 24
22645408 TATACATATA
*
22645418 CTCATCATCATCATGCACACCATC
1 CTCATCACCATCATGCACACCATC
*
22645442 C-CATCACCATCATGCACACCGTC
1 CTCATCACCATCATGCACACCATC
22645465 TCATCATCACCA
1 -C-TCATCACCA
22645477 GCTCATGCGC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
23 20 0.67
24 2 0.07
26 8 0.27
ACGTcount: A:0.29, C:0.44, G:0.05, T:0.22
Consensus pattern (24 bp):
CTCATCACCATCATGCACACCATC
Found at i:22645556 original size:43 final size:44
Alignment explanation
Indices: 22645509--22645600 Score: 105
Period size: 44 Copynumber: 2.1 Consensus size: 44
22645499 CACATGGCTA
** *
22645509 GGTCATCACCGGGTTATGAGCACT-CCCTACTCTCACATAATCG
1 GGTCATCACCGGCCTATGAGCACTCCCCTACTCGCACATAATCG
** * *
22645552 GGTCATCATTGGCCTATGCGCACTCCCCTACTCGCACATAGTCG
1 GGTCATCACCGGCCTATGAGCACTCCCCTACTCGCACATAATCG
*
22645596 AGTCA
1 GGTCA
22645601 ATATAATTAC
Statistics
Matches: 40, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
43 19 0.47
44 21 0.52
ACGTcount: A:0.22, C:0.34, G:0.20, T:0.25
Consensus pattern (44 bp):
GGTCATCACCGGCCTATGAGCACTCCCCTACTCGCACATAATCG
Found at i:22648699 original size:22 final size:22
Alignment explanation
Indices: 22648671--22648714 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
22648661 TTAAGTTGGT
*
22648671 ATCAGAGAC-TTTGGTTTTAAAG
1 ATCAGAG-CTTTTGGGTTTAAAG
22648693 ATCAGAGCTTTTGGGTTTAAAG
1 ATCAGAGCTTTTGGGTTTAAAG
22648715 TTGTTTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 1 0.05
22 19 0.95
ACGTcount: A:0.30, C:0.09, G:0.25, T:0.36
Consensus pattern (22 bp):
ATCAGAGCTTTTGGGTTTAAAG
Found at i:22648724 original size:11 final size:11
Alignment explanation
Indices: 22648708--22648735 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
22648698 AGCTTTTGGG
22648708 TTTAAAGTTGT
1 TTTAAAGTTGT
22648719 TTTAAAGTTGT
1 TTTAAAGTTGT
22648730 TTTAAA
1 TTTAAA
22648736 AATTTACAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.14, T:0.54
Consensus pattern (11 bp):
TTTAAAGTTGT
Found at i:22659516 original size:38 final size:34
Alignment explanation
Indices: 22659452--22659548 Score: 104
Period size: 34 Copynumber: 2.7 Consensus size: 34
22659442 ATATTTCCCG
* * * *
22659452 TGTGCACGATGTGAGAGGATGTACACGACGGCATTAGA
1 TGTGCACGATGTGGGGGGATGCACACGA-GG-ACT--A
* *
22659490 TGTGCACGATGTGGGGGGATACACACGATGACTA
1 TGTGCACGATGTGGGGGGATGCACACGAGGACTA
22659524 TGTGCACGATGTGGGGGGATGCACA
1 TGTGCACGATGTGGGGGGATGCACA
22659549 TGAGCTGGGG
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
34 25 0.48
36 2 0.04
37 1 0.02
38 24 0.46
ACGTcount: A:0.26, C:0.16, G:0.37, T:0.21
Consensus pattern (34 bp):
TGTGCACGATGTGGGGGGATGCACACGAGGACTA
Found at i:22663209 original size:22 final size:22
Alignment explanation
Indices: 22663181--22663224 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
22663171 CTTGGTGGTA
22663181 ACATGTAAA-TGAGAATAGTGTT
1 ACATGTAAACTGAGAA-AGTGTT
*
22663203 ACATGTAAACTTAGAAAGTGTT
1 ACATGTAAACTGAGAAAGTGTT
22663225 TAATGGAAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.41, C:0.07, G:0.20, T:0.32
Consensus pattern (22 bp):
ACATGTAAACTGAGAAAGTGTT
Found at i:22663810 original size:2 final size:2
Alignment explanation
Indices: 22663803--22663829 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
22663793 TATAATATTG
22663803 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
22663830 CTATGTCATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:22664044 original size:54 final size:54
Alignment explanation
Indices: 22663979--22664134 Score: 240
Period size: 54 Copynumber: 2.9 Consensus size: 54
22663969 TGGCATTAGC
22663979 TGTGCACGATGTGGGGGGATGCACATGAGCTGGGTGAGATGGGGTGTCCGACTA
1 TGTGCACGATGTGGGGGGATGCACATGAGCTGGGTGAGATGGGGTGTCCGACTA
* * ** * *
22664033 TGTGCATGATGTGGGGGGATGCATATGAGCTGGGTGAGACAGGGTGTCTGGCTA
1 TGTGCACGATGTGGGGGGATGCACATGAGCTGGGTGAGATGGGGTGTCCGACTA
*
22664087 TGTGCACGATATGGGGGGATGCACATGAGCTGGGTGAGATGGTGGTGT
1 TGTGCACGATGTGGGGGGATGCACATGAGCTGGGTGAGATGG-GGTGT
22664135 ATGTGCTTAT
Statistics
Matches: 90, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
54 85 0.94
55 5 0.06
ACGTcount: A:0.19, C:0.12, G:0.45, T:0.24
Consensus pattern (54 bp):
TGTGCACGATGTGGGGGGATGCACATGAGCTGGGTGAGATGGGGTGTCCGACTA
Found at i:22667851 original size:43 final size:43
Alignment explanation
Indices: 22667803--22667964 Score: 213
Period size: 43 Copynumber: 3.8 Consensus size: 43
22667793 ATCGTCATGT
* *
22667803 GCACTCCCTACTCGCACATAGCTAGGTCATCATCGGCTTATGC
1 GCACTCCCTACTCGCACATAGCTGGGTCATCATCAGCTTATGC
*
22667846 GCACTCCCTACTCGCACATAG-TCGGGTCATCATCTGCTTATGC
1 GCACTCCCTACTCGCACATAGCT-GGGTCATCATCAGCTTATGC
* * **
22667889 GCACTCCGTACTCGCACATAGAC-GGGTCATCATCAGCTCATTT
1 GCACTCCCTACTCGCACATAG-CTGGGTCATCATCAGCTTATGC
22667932 GCACTCCC-ACATCGCACATAGCTGGGTCATCAT
1 GCACTCCCTAC-TCGCACATAGCTGGGTCATCAT
22667965 TATCACACAA
Statistics
Matches: 106, Mismatches: 8, Indels: 10
0.85 0.06 0.08
Matches are distributed among these distances:
42 4 0.04
43 102 0.96
ACGTcount: A:0.22, C:0.35, G:0.19, T:0.25
Consensus pattern (43 bp):
GCACTCCCTACTCGCACATAGCTGGGTCATCATCAGCTTATGC
Found at i:22669021 original size:171 final size:171
Alignment explanation
Indices: 22668729--22672412 Score: 3709
Period size: 171 Copynumber: 21.6 Consensus size: 171
22668719 NNNNNNTCGG
* * * * *
22668729 GAAACGTGAAGCGAAAGCCATCGATTGAGAAGAAAAGTCCATTTATAGTCACTCATACTTTTGAA
1 GAAACGTGAAGCGAAAGCCATCGATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAA
* * * *
22668794 AGCCTTATTACTCACTTTAAACGGTTTTATAATCTCATTATTGATTTTATGTTGAATTTTCTTAC
66 AGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTAC
* * *
22668859 ATTTTTTGTTAAAACAGATTCTAATTGAATGTTTGCCTTAA
131 ATTTTTTGTTAAAACAGATTATAATTGAATGTTTACCTCAA
* * * *
22668900 GAAACATGAAGCGAAAGCAATCGTTTGACAAGAAAAGTTCATTTACT-GTCACTCATACCTTCGA
1 GAAACGTGAAGCGAAAGCCATCGATTGACAAGAAAAGTTCATTTA-TAGTCACTCATGCCTTCGA
22668964 AAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTA
65 AAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTA
** * * *
22669029 CATTGCTTGTTAAAACATATTATAATTGAATGTTTGCCT-AGG
130 CATTTTTTGTTAAAACAGATTATAATTGAATGTTTACCTCA-A
* * * * *
22669071 GAAACATGAAGCGAAAGCCATCGATTGACAAGAAAAGTCCATTTATTGTCGCTCATGCCTTCAAA
1 GAAACGTGAAGCGAAAGCCATCGATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAA
* * * * *
22669136 AGCCTCATTAGTTGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTAAATTTCTTTAC
66 AGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTAC
* * *
22669201 ATTTTTTGTTAAAACAAATTATAATTGAATGTTTACCTTAG
131 ATTTTTTGTTAAAACAGATTATAATTGAATGTTTACCTCAA
* * * * * * * *
22669242 GAAACGTGTAGCTAAAACCCTCCG-TTAACAGGAAAAGTTAATTTACAGTCACTCATGCCTTC-A
1 GAAACGTGAAGCGAAAGCCAT-CGATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGA
* * * *
22669305 GAAGCCTTATTACTCACTTAAAATGGTTTTATAATCTCATAATTGATTTTTAGTTGAATTTTTTT
65 -AAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTT
* * ** *
22669370 ACATTTTTGGTTAAGAA-AGGTTATAATTTTATGTTTACCTCAT
129 ACATTTTTTGTTAA-AACAGATTATAATTGAATGTTTACCTCAA
* * ** * * * *
22669413 GAAACGTGAAGCAAAAGCCATCCATCAACTAGAAAAGTCCATTTATAGTCATTCATGCCTTTGAA
1 GAAACGTGAAGCGAAAGCCATCGATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAA
* * * * * * *
22669478 TGCCTTATTACTTGCTTTAAATTGTTTTATAATCCCATAATTGATTTTAAGTTGAATGTTCTTAC
66 AGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTAC
* * * * *
22669543 ATTTTTGGTTAAAACATATTCTAATTGAATGTTTGCCT-AG
131 ATTTTTTGTTAAAACAGATTATAATTGAATGTTTACCTCAA
* * * * *
22669583 GTAAACGTGAAGCGAAAGCCATCTATTGACAAGAAAAGTCCATTTATAGCCATTCATGCCTTCAA
1 G-AAACGTGAAGCGAAAGCCATCGATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGA
* * *
22669648 AAGCCTTATTACTCGCATTAATTGATTTTATAATCTCATTATTGATTTTAAGTTGAA-TTTTTTA
65 AAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTA
* * * ***
22669712 TATTTTTT-TTAAAACAGATTCTAATAGAATGTTTACCTTGG
130 CATTTTTTGTTAAAACAGATTATAATTGAATGTTTACCTCAA
* * ** * * *
22669753 GAAACATGAGGTTAAAACGC-TCGATT-A-ATAGAAAAAG-TCAATTTATAATCACTCATACCTT
1 GAAACGTGAAGCGAAAGC-CATCGATTGACA-AG-AAAAGTTC-ATTTATAGTCACTCATGCCTT
* * * * * * * *
22669814 C-AGAAGCCTTATTAGTCGCTTAAAATGATCTTATAACCTCATAATTGATGTTAGGTTGAATTTT
62 CGA-AAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTT
* *** *
22669878 TTTATATTTTCAATTAAGAA-AGGTTATAATTGAATGTTTACCTCAA
126 TTTACATTTTTTGTTAA-AACAGATTATAATTGAATGTTTACCTCAA
* * *
22669924 AAAACGTGAAGCGAAAGCCATCGATTGACAAGAAAAGTTCATTTATAGTTACTCATGCCTTTGAA
1 GAAACGTGAAGCGAAAGCCATCGATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAA
* * *
22669989 AGCCTTATTACTCACTTTAAATGGTTTTATAATC-CAATTATTGATTTTATGTTGAATTTTCTTA
66 AGCCTTATTACTCGCTTTAAATGGTTTTATAATCTC-ATTATTGATTTTAAGTTGAATTTTTTTA
* ***
22670053 CATTTTTTTGTTAAAACAGATCATAATTGAATGTTTACCTTGG
130 CA-TTTTTTGTTAAAACAGATTATAATTGAATGTTTACCTCAA
* * * *
22670096 GAAACTTGAAGTGAAA-TCATTCGATTGACAAGAAAA-TTCCATTTACT-GTCAGTCATGCCTTC
1 GAAACGTGAAGCGAAAGCCA-TCGATTGACAAGAAAAGTT-CATTTA-TAGTCACTCATGCCTTC
*
22670158 GAAAGCTTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTT
63 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTT
* *
22670223 TACA-TTTTTATTAAAACAGATTATAATTGAATGTTTACCTCAG
128 TACATTTTTTGTTAAAACAGATTATAATTGAATGTTTACCTCAA
* * * * * * * *
22670266 GAAACGTGAGGCTAAAACC-TCCATTAACAGGAAAAG-TCTATTTATAGTCAATCATGCCTT-TA
1 GAAACGTGAAGCGAAAGCCATCGATTGACAAGAAAAGTTC-ATTTATAGTCACTCATGCCTTCGA
* * * * * **
22670328 GAAGCCTTATTACTCACTTAAAATGGGTTTATAATCCCATAATTGATTTTAAGTTGAACGTTTTT
65 -AAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTT
*** * * *
22670393 ACATTTTCAATTAAGAA-AGGTTATAATTGAATGTTTCCCTCAT
129 ACATTTTTTGTTAA-AACAGATTATAATTGAATGTTTACCTCAA
* * * * * * *
22670436 GAAACGTGAAGCGAAAGCCATCCATTAACTAGAAAAGTACATTTCTAGTCATTCATGCTTTCGAA
1 GAAACGTGAAGCGAAAGCCATCGATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAA
* * * *
22670501 TA-CCTTATTACTTGCTTTAAGTGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTCTTA
66 -AGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTA
* * *
22670565 CATTTTTTGTTAAAACAGATAATAATTGAATGTTTGCCT-AG
130 CATTTTTTGTTAAAACAGATTATAATTGAATGTTTACCTCAA
* * * * ** * *
22670606 GCAAATGTGAAGCGAAAGCCATCAATTGACAACAAAAGTCCATTTATAACCATTCATGCCTTTG-
1 G-AAACGTGAAGCGAAAGCCATCGATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGA
* * * * *
22670670 AAGCCCTATTACTTGCTTTTATTGGTTTTATAATCTCATTATTGATTTTAAGTT-AAATTTTTTA
65 AAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTA
* * *
22670734 CATTTTTTGTTAAAACAAATTATAATTCAATGTTTACCTCGA
130 CATTTTTTGTTAAAACAGATTATAATTGAATGTTTACCTCAA
* * * * * * *
22670776 GAAACGTGAGGCTAAAACCATCCATTGACAAGAAACG-TCTATGTATAGTCACTCATGCCTT-TA
1 GAAACGTGAAGCGAAAGCCATCGATTGACAAGAAAAGTTC-ATTTATAGTCACTCATGCCTTCGA
* * * * * * * *
22670839 GAAGCCTTATAACACACTTAAAATGGTTTTATAATCTCATAATTAATTTTAAGTTAAACTTTTTT
65 -AAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTT
** * *
22670904 ACATTTTCGGTTAAGAA-AGGTTATAATTGAATGTTTACCTCGA
129 ACATTTTTTGTTAA-AACAGATTATAATTGAATGTTTACCTCAA
* * * * ** * * *
22670947 GATATGTGAAGCAAAAGCCATCCATTGATGAGAAAAGTCCATTTATAGTCACTCATACCTTTGAA
1 GAAACGTGAAGCGAAAGCCATCGATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAA
* * ** *
22671012 AGCCTTATTACTCACTTTAAATGGTTTTATAATCTGATTATTGATTTTAAACTAAATTTTTTTAC
66 AGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTAC
* * * * **
22671077 ATTATTGGTTACAACAGATTATAATTGAATG-ATACCTTGA
131 ATTTTTTGTTAAAACAGATTATAATTGAATGTTTACCTCAA
* * * * * *
22671117 GAAACGTGAGGCTAAAACCCTCCG-TTGATAAGGAAAAG-TCTATTTATAGTCACTCAGGCCTTC
1 GAAACGTGAAGCGAAAGCCAT-CGATTGACAA-GAAAAGTTC-ATTTATAGTCACTCATGCCTTC
* * * * *
22671180 GAAAGCCTTATTACTCGTTTTAAATGATTTTTTAATCTCATTATTGATTTTATGTTGAATTTTCT
63 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTT
* * * * *
22671245 TACATTTTTTGTTAAAACATATTCTAATTGAATTTTTGCCTCTA
128 TACATTTTTTGTTAAAACAGATTATAATTGAATGTTTACCTCAA
** * * * * * * *
22671289 GAAAAATGAAGCAAAAGCCATCGTTTGATAAGAAAAGTCCATTTATAG-CAATTCATGTCTTCAA
1 GAAACGTGAAGCGAAAGCCATCGATTGACAAGAAAAGTTCATTTATAGTC-ACTCATGCCTTCGA
* * * *
22671353 AAGCCTTACTACTCGCTTTAATTGATTTTATAATCTCATTATTGATTTTAAGTTGATTTTTTTTA
65 AAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTA
* *
22671418 CATTTTTTGTTAAAAAAGTTTATAATTGAATGTTTACCTCAA
130 CATTTTTTGTTAAAACAGATTATAATTGAATGTTTACCTCAA
* * * * *
22671460 GAAACGTG-AGGGTAAAACCCTTCG-TTCATAAGAAAAGTTCATTTATAGTCACTCATGCCTTC-
1 GAAACGTGAAGCG--AAAGCCATCGATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCG
* * * * * *
22671522 AGAAGCCTTATTAGTGGCTTAAAATGGTTTTGTAATCTCATAATTGATTTTAAGTTGAACTTTAT
64 A-AAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAA-TTTTT
** *
22671587 TT-CATTTTCGGTTAAGAA-AGGTTATAATTGAATGTTTACCTCAA
127 TTACATTTTTTGTTAA-AACAGATTATAATTGAATGTTTACCTCAA
* * ** * *
22671631 AAAACATGAAGTAAAAGCCATCGATTGACATGAAAAGTTCATTTATAGTCACTCATGCCTTCAAA
1 GAAACGTGAAGCGAAAGCCATCGATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAA
* * * * *
22671696 AGCCTTATTACTCACTTTAAATGGTTTTATAATCCCGTTATTGATTTTATGTTGAATTTTATTAC
66 AGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTAC
* **
22671761 ATTTTTTGTTGAAAA-AGATTATAATTGAATGTTTGCCTCGG
131 ATTTTTTGTT-AAAACAGATTATAATTGAATGTTTACCTCAA
* * * * * * *
22671802 GAAACTTGAAGCAAAATCCATCGATTGACAAGAAAAATCCATTTACAGTCAGTCATGCCTTCGAA
1 GAAACGTGAAGCGAAAGCCATCGATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAA
* * * *
22671867 AGCCTTATTTCTCGCTTTAAATGGTTTTAGAAACTCATTATTGATTTTAAGTTGAATTTTTTTAT
66 AGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTAC
* *
22671932 ATTTTTTGTTAAAACATATTATAATTGAATGTTTACCTC-G
131 ATTTTTTGTTAAAACAGATTATAATTGAATGTTTACCTCAA
* * * * * * *
22671972 GTAAACGTGAGGCTAAAACCCTCCATT-A-ATAGAAAAAGTCCATTTATAGTCAGTCATGCCTTC
1 G-AAACGTGAAGCGAAAGCCATCGATTGACA-AG-AAAAGTTCATTTATAGTCACTCATGCCTTC
* * * * *
22672035 AAAAGGCTTATTACTCGCTTAAAATGGTTTTATAATCCCATAATTGATTTTAAGTTGAATTTTTT
63 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTT
** * *
22672100 TACATTTTCAGCTAAGAA-AGGTTATAATTGAATGTTTACCTCAA
128 TACATTTTTTGTTAA-AACAGATTATAATTGAATGTTTACCTCAA
* * * * * *
22672144 GAAACGTGAAGTGAAATCCATCCATTAACCAA-AGAA-TTCCATTTATAG-CAACTCTTGCCTTC
1 GAAACGTGAAGCGAAAGCCATCGATTGA-CAAGAAAAGTT-CATTTATAGTC-ACTCATGCCTTC
* * * * **
22672206 GAAAGCCTCATTACTCGTTTTAAATGGTTTTATAATTTGATTATTGATTTTAAACTGAATTTTTT
63 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTT
* * * * * * *
22672271 GACATTTTTGGTTACAACTGTTTATAATTGAATGTTTGCCTCGA
128 TACATTTTTTGTTAAAACAGATTATAATTGAATGTTTACCTCAA
* * * * * **
22672315 GAAACTTGAAGTGAATGCCATCGATTGACAAGAAATGTCCATTTATAGTCACTCATGCCTTTAAA
1 GAAACGTGAAGCGAAAGCCATCGATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAA
* *
22672380 AGCCTTATTACTCGCTTTAATTGATTTTATAAT
66 AGCCTTATTACTCGCTTTAAATGGTTTTATAAT
22672413 GTCACGACCC
Statistics
Matches: 2919, Mismatches: 506, Indels: 176
0.81 0.14 0.05
Matches are distributed among these distances:
167 1 0.00
168 9 0.00
169 297 0.10
170 292 0.10
171 2098 0.72
172 217 0.07
173 4 0.00
174 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.39
Consensus pattern (171 bp):
GAAACGTGAAGCGAAAGCCATCGATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAA
AGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTAC
ATTTTTTGTTAAAACAGATTATAATTGAATGTTTACCTCAA
Found at i:22675499 original size:171 final size:170
Alignment explanation
Indices: 22675212--22675983 Score: 990
Period size: 171 Copynumber: 4.5 Consensus size: 170
22675202 GGGCTTGACA
* * * * *
22675212 TATAATCTCACTATTGATTTTAAGTTAAATTTTTTTACATTTTTTGTTAAAGCAGATTATAATTG
1 TATAATCTCATTATTGATTTTAAGTTGAATTTTCTTA-AATTTTTGTTAAAACAGATTATAATTG
* * * *
22675277 AATGTTTACCTCGAAAAACGTGAGGCTAAAATCC-TCCG-TTGATAGGAAAAGTCCATTTATAGT
65 AATGTTTACCTCGAGAAACGTGAAGC-AAAAGCCAT-CGATTGATAAGAAAAGTCCATTTATAGT
*
22675340 CACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTT
128 CACTCATGCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTT
* *
22675383 TATAATCTCATTATTGATTTTAAGTTGAATTTTCTTAAATATTTGATTAAAACGGATTATAATTG
1 TATAATCTCATTATTGATTTTAAGTTGAATTTTCTTAAATTTTTG-TTAAAACAGATTATAATTG
* * * * * *
22675448 AATGTTTACTTTGAGAAACGTGAAGCGAATGCCATCGATTGACAAGAAAAGTCCATTTATAGTTA
65 AATGTTTACCTCGAGAAACGTGAAGCAAAAGCCATCGATTGATAAGAAAAGTCCATTTATAGTCA
* *
22675513 CTCATGCCTTCTAAAGCCTTATTACTCTCTTTAAATGGTTT
130 CTCATGCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTT
* * * * *
22675554 TATAATCTAATTATTGATTTTATGTTGAATTTTCTTACATTTTTGGTTAAAATAGATTCTAATTG
1 TATAATCTCATTATTGATTTTAAGTTGAATTTTCTTAAATTTTT-GTTAAAACAGATTATAATTG
* * * * * * * * * *
22675619 AATGTTTGCCTTGAGAAACATGAAGCGAAAGCCACCGTTTGACAAGAAAATTCTATTTATTGTCA
65 AATGTTTACCTCGAGAAACGTGAAGCAAAAGCCATCGATTGATAAGAAAAGTCCATTTATAGTCA
22675684 CTCATGCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTT
130 CTCATGCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTT
* *
22675725 TATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTAGTTTAAAACAGATTATAATT
1 TATAATCTCATTATTGATTTTAAGTTGAATTTTCTTAAATTTTT-G-TTAAAACAGATTATAATT
* * * * * * *
22675790 GAATGTTTGCCTAGGGAAACATGAAGCAAAAGCCATCGTTTGACAAGAAAAGTCCATTTATTGTC
64 GAATGTTTACCTCGAGAAACGTGAAGCAAAAGCCATCGATTGATAAGAAAAGTCCATTTATAGTC
* * *
22675855 TCACATGCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTT
129 ACTCATGCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTT
* * * *
22675897 TATAATCTCATTAGTGATTTTAAGTTGAATTTTTTTACATTTTTTGTTAAAATAGATTATAATTG
1 TATAATCTCATTATTGATTTTAAGTTGAATTTTCTTA-AATTTTTGTTAAAACAGATTATAATTG
*
22675962 AATGTCTACCTCGAGAAACGTG
65 AATGTTTACCTCGAGAAACGTG
22675984 TGGCTAAAAT
Statistics
Matches: 533, Mismatches: 62, Indels: 12
0.88 0.10 0.02
Matches are distributed among these distances:
170 12 0.02
171 364 0.68
172 152 0.29
173 5 0.01
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.40
Consensus pattern (170 bp):
TATAATCTCATTATTGATTTTAAGTTGAATTTTCTTAAATTTTTGTTAAAACAGATTATAATTGA
ATGTTTACCTCGAGAAACGTGAAGCAAAAGCCATCGATTGATAAGAAAAGTCCATTTATAGTCAC
TCATGCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTT
Found at i:22676324 original size:171 final size:167
Alignment explanation
Indices: 22676014--22676942 Score: 963
Period size: 171 Copynumber: 5.4 Consensus size: 167
22676004 TAGGAAAAGT
* * * *
22676014 CTCATGCCTTCAAAAGTCTTATTACTCACTTAAAATAGTTTTATAATCTCATAATTGATTTTAAG
1 CTCATGCCTTCAAAAGCCTTATTACT-TCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAG
* * * *
22676079 TTGAATTTTTTTACAATTTCTGTTAAGAAAGGTTATAATTGAATGTTTACCTCGTGAAACGTGAA
65 TTGAATTTTCTTAC-ATTTTTGTTAA-AAAGATTATAATTGAATGTTTACCTAG-GAAACGTGAA
* * * * *
22676144 GCGAAAGCCATCCATCGACT-AGAACAGTCCATTTATGGTCA
127 GCAAAAGCCATCGATTGA-TAAGAAAAGTCCATTTATAGTCA
* * *
22676185 TTCATGCCTTCGAATGCCTTATTACTTGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAG
1 CTCATGCCTTCAAAAGCCTTATTACTT-CTTTAAATGGTTTTATAATCTCATAATTGATTTTAAG
* * * * *
22676250 TTGAATTGTCTTACATTTTTGGTTAAAACATATTCTAATTGAATGTTTTCCTAGGCAAACGTAAA
65 TTGAATTTTCTTACATTTTT-GTTAAAA-AGATTATAATTGAATGTTTACCTAGG-AAACGTGAA
* * * *
22676315 GCAAAAGCCATTGATTGACAAGAAACGTCCATTTATAGCCA
127 GCAAAAGCCATCGATTGATAAGAAAAGTCCATTTATAGTCA
* ** * * * *
22676356 TTCATGCCTTTGAAAGCCTTAGTACTCTCATTAATTGGTTTTATAATCTCATTATTGATTTTAAG
1 CTCATGCCTTCAAAAGCCTTATTACT-TCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAG
* *
22676421 TTGAATTTTCTTACATTTTTTGTTAAAAAAGATTATAATTGAATGTTTACCTTGGGAAACGTGAG
65 TTGAATTTTCTTACA-TTTTTGTT-AAAAAGATTATAATTGAATGTTTACC-TAGGAAACGTGAA
* * * *
22676486 GCTAAAA-CCCTCCG-TTGTTAAAAAAAGACCATTTATAGTCA
127 GC-AAAAGCCAT-CGATTGATAAGAAAAGTCCATTTATAGTCA
* * *
22676527 CTCATGCCTTCAAAATCCTTATTGC-TCATTTAAAATGGTTTTATAATCTCATAATCT-ATTTCA
1 CTCATGCCTTCAAAAGCCTTATTACTTC-TTT-AAATGGTTTTATAATCTCATAAT-TGATTTTA
* * * * *
22676590 AGTTGAATTTTCTTACATTTTCAGTTAAGAAAGTTTATAATTAAATGTTTTCCTCGAGAAACGTG
63 AGTTGAATTTTCTTACATTTT-TGTTAA-AAAGATTATAATTGAATGTTTACCTAG-GAAACGTG
*
22676655 AAGCAAAAGCCATCGATTGATAAGAAAAGTCCATTTATTGTCA
125 AAGCAAAAGCCATCGATTGATAAGAAAAGTCCATTTATAGTCA
* * *
22676698 CTCATGACTTCAAAAGCCTTATTACTCTCTTTAAATGGTTTTATAATCCCATTATTGATTTTATA
1 CTCATGCCTTCAAAAGCCTTATTACT-TCTTTAAATGGTTTTATAATCTCATAATTGATTTTA-A
* * * * ** *
22676763 -TTGAAATTTCTTACATCTTTCGCTAAAACAGATTCTAATTGAATGTTTACCTCAAAAAACATGA
64 GTTGAATTTTCTTACAT-TTTTGTTAAAA-AGATTATAATTGAATGTTTACCT-AGGAAACGTGA
* * * *
22676827 AGCAAAAGCCATCGTTTGATAACAAAAGTCTATTTATTA-TCG
126 AGCAAAAGCCATCGATTGATAAGAAAAGTCCATTTA-TAGTCA
* * * * *
22676869 CTCATGCCTTCGAAAGCCTTATTACTCGCTTAAAATGGTTTTATAATCTGATTATTGATTTTAAG
1 CTCATGCCTTCAAAAGCCTTATTACT-TCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAG
22676934 TTGAATTTT
65 TTGAATTTT
22676943 TTTTACTTTT
Statistics
Matches: 634, Mismatches: 96, Indels: 56
0.81 0.12 0.07
Matches are distributed among these distances:
169 2 0.00
170 28 0.04
171 575 0.91
172 27 0.04
173 2 0.00
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (167 bp):
CTCATGCCTTCAAAAGCCTTATTACTTCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGT
TGAATTTTCTTACATTTTTGTTAAAAAGATTATAATTGAATGTTTACCTAGGAAACGTGAAGCAA
AAGCCATCGATTGATAAGAAAAGTCCATTTATAGTCA
Found at i:22676941 original size:342 final size:340
Alignment explanation
Indices: 22676014--22676942 Score: 1075
Period size: 342 Copynumber: 2.7 Consensus size: 340
22676004 TAGGAAAAGT
* * * * *
22676014 CTCATGCCTTCAAAAGTCTTATTACTCACTTAAAATAGTTTTATAATCTCATAATTGATTTTAAG
1 CTCATGCCTTCAAAAGCCTTATTACTCTCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAG
* * *
22676079 TTGAATTTTTTTACA-ATTTCTGTTAAGAAAGGTTATAATTGAATGTTTACCTCGTGAAACGTGA
66 TTGAATTTTCTTACATATTTC-GTTAA-AAAGATTATAATTGAATGTTTACCTCGAGAAACGTGA
* * * * * ** * *
22676143 AGCGAAAGCCATCCATCGACT-AGAACAGTCCATTTATGGTCATTCATGCCTTCGAATGCCTTAT
129 AGCAAAAGCCAT-CGTTGA-TAAAAAAAGTCCATTTATTATCACTCATGCCTTCGAAAGCCTTAT
* * * **
22676207 TACTTGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTGTCTTACATTTTTGG
192 TACTCGCTTAAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTCTTACATTTTCAG
* * *
22676272 TTAAAACATATTCTAATTGAATGTTTTCCTAGGCAAACGTAAAGCAAAAGCCATTGATTGACAAG
257 TTAAAACATATTATAATTAAATGTTTTCCTAGGCAAACGTAAAGCAAAAGCCATCGATTGACAAG
*
22676337 AAACGTCCATTTATAGCCA
322 AAAAGTCCATTTATAGCCA
* ** * * *
22676356 TTCATGCCTTTGAAAGCCTTAGTACTCTCATTAATTGGTTTTATAATCTCATTATTGATTTTAAG
1 CTCATGCCTTCAAAAGCCTTATTACTCTCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAG
* * * * *
22676421 TTGAATTTTCTTACATTTTTTGTTAAAAAAGATTATAATTGAATGTTTACCTTGGGAAACGTGAG
66 TTGAATTTTCTTACATATTTCGTT-AAAAAGATTATAATTGAATGTTTACCTCGAGAAACGTGAA
* * * * *
22676486 GCTAAAA-CCCTCCGTTGTTAAAAAAAGACCATTTA-TAGTCACTCATGCCTTCAAAATCCTTAT
130 GC-AAAAGCCAT-CGTTGATAAAAAAAGTCCATTTATTA-TCACTCATGCCTTCGAAAGCCTTAT
* ** *
22676549 TGCTCATTTAAAATGGTTTTATAATCTCATAATCT-ATTTCAAGTTGAATTTTCTTACATTTTCA
192 TACTCGCTTAAAATGGTTTTATAATCTCATAAT-TGATTTTAAGTTGAATTTTCTTACATTTTCA
* *
22676613 GTTAAGAA-AGT-TTATAATTAAATGTTTTCCTCGAG-AAACGTGAAGCAAAAGCCATCGATTGA
256 GTTAA-AACA-TATTATAATTAAATGTTTTCCTAG-GCAAACGTAAAGCAAAAGCCATCGATTGA
* * *
22676675 TAAGAAAAGTCCATTTATTGTCA
318 CAAGAAAAGTCCATTTATAGCCA
* *
22676698 CTCATGACTTCAAAAGCCTTATTACTCTCTTTAAATGGTTTTATAATCCCATTATTGATTTTATA
1 CTCATGCCTTCAAAAGCCTTATTACTCTCTTTAAATGGTTTTATAATCTCATTATTGATTTTA-A
* * * * * * *
22676763 -TTGAAATTTCTTACATCTTTCGCTAAAACAGATTCTAATTGAATGTTTACCTCAAAAAACATGA
65 GTTGAATTTTCTTACATATTTCGTTAAAA-AGATTATAATTGAATGTTTACCTCGAGAAACGTGA
* * *
22676827 AGCAAAAGCCATCGTTTGATAACAAAAGTCTATTTATTATCGCTCATGCCTTCGAAAGCCTTATT
129 AGCAAAAGCCATCG-TTGATAAAAAAAGTCCATTTATTATCACTCATGCCTTCGAAAGCCTTATT
* *
22676892 ACTCGCTTAAAATGGTTTTATAATCTGATTATTGATTTTAAGTTGAATTTT
193 ACTCGCTTAAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTT
22676943 TTTTACTTTT
Statistics
Matches: 489, Mismatches: 83, Indels: 30
0.81 0.14 0.05
Matches are distributed among these distances:
341 12 0.02
342 461 0.94
343 16 0.03
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (340 bp):
CTCATGCCTTCAAAAGCCTTATTACTCTCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAG
TTGAATTTTCTTACATATTTCGTTAAAAAGATTATAATTGAATGTTTACCTCGAGAAACGTGAAG
CAAAAGCCATCGTTGATAAAAAAAGTCCATTTATTATCACTCATGCCTTCGAAAGCCTTATTACT
CGCTTAAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTCTTACATTTTCAGTTAA
AACATATTATAATTAAATGTTTTCCTAGGCAAACGTAAAGCAAAAGCCATCGATTGACAAGAAAA
GTCCATTTATAGCCA
Found at i:22684642 original size:171 final size:171
Alignment explanation
Indices: 22684347--22685079 Score: 884
Period size: 171 Copynumber: 4.3 Consensus size: 171
22684337 NNNNNNNNNN
*
22684347 AGAAAAGTCCATTTATAGTCATTCATGCCTTCGAATGCCTTATTACTTGCTTAAAATGGTTTTAT
1 AGAAAAGTCCATTTATAGTCATTCATGCCTTCGAAAGCCTTATTACTTGCTTAAAATGGTTTTAT
* *
22684412 AATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTCGGTTAAGAAAGGTTATAATTGAAT
66 AATCTCATAATTGATTTTAAGTTGAATTTTTTAACATTTTCGGTTAAGAAAGATTATAATTGAAT
* * * * *
22684477 GTGTGCCTCTAGAAACATGAAGCGAAAGCCACCCATTGATA
131 GTTTACCTCGAGAAACGTGAAGCGAAAGCCACCCATTAATA
*
22684518 AGAAAAGTCCATTTATAGTCATTCATGCCTTCGAATGCCTTATTACTTGCTTAAAATGGTTTTAT
1 AGAAAAGTCCATTTATAGTCATTCATGCCTTCGAAAGCCTTATTACTTGCTTAAAATGGTTTTAT
* * *
22684583 AATCTCATTATTGATTTTAAGTTGAAGTTTCTT-ACATTTTTGGTTAA-AACAGATTATAATTGA
66 AATCTCATAATTGATTTTAAGTTGAA-TTTTTTAACATTTTCGGTTAAGAA-AGATTATAATTGA
* * * * * *
22684646 ATGTTTGCCTAGGGAAACGTGAAGCGAAAGCCATCCATTGACA
129 ATGTTTACCTCGAGAAACGTGAAGCGAAAGCCACCCATTAATA
* * * * * **
22684689 AGAAAAGTCCATTTACAGTCAGTCATGCCTTTGAAAGCCTTATTACTCGCTTTAAATATTTTTAT
1 AGAAAAGTCCATTTATAGTCATTCATGCCTTCGAAAGCCTTATTACTTGCTTAAAATGGTTTTAT
* * * **
22684754 AATCTCATTATTGATGTTAAGTTGAATTTTTTCACATTTTTTGTTAA-AAGAGATTATAATTGAA
66 AATCTCATAATTGATTTTAAGTTGAATTTTTTAACATTTTCGGTTAAGAA-AGATTATAATTGAA
* * * * * * * *
22684818 TGTTTACTTCGGGAAACGTTAGGCTAAAACC-CTTCGTTAATA
130 TGTTTACCTCGAGAAACGTGAAGCGAAAGCCAC-CCATTAATA
* * * * * **
22684860 GGAAAAGTCCATTTATAATCATCCATGCCTTC-AGAAGACTTATTAGTCACTTAAAATGGTTTTA
1 AGAAAAGTCCATTTATAGTCATTCATGCCTTCGA-AAGCCTTATTACTTGCTTAAAATGGTTTTA
** * *
22684924 TGTTCTCATAATTGATTTTAAGTTGAATTTTTTAACATTTTCAGTTAAGAAAGGTTATAATTGAA
65 TAATCTCATAATTGATTTTAAGTTGAATTTTTTAACATTTTCGGTTAAGAAAGATTATAATTGAA
* ** *
22684989 TGTTTACCTCAAGAAACGTGAAGCGAAAGCCTTCCATTAATG
130 TGTTTACCTCGAGAAACGTGAAGCGAAAGCCACCCATTAATA
*
22685031 AGAAAAGTCCATTTATAGTCACTT-ATGCCTTTGAAAGCCTTATTACTTG
1 AGAAAAGTCCATTTATAGTCA-TTCATGCCTTCGAAAGCCTTATTACTTG
22685080 TGAGTCCCTA
Statistics
Matches: 479, Mismatches: 74, Indels: 18
0.84 0.13 0.03
Matches are distributed among these distances:
170 8 0.02
171 462 0.96
172 9 0.02
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (171 bp):
AGAAAAGTCCATTTATAGTCATTCATGCCTTCGAAAGCCTTATTACTTGCTTAAAATGGTTTTAT
AATCTCATAATTGATTTTAAGTTGAATTTTTTAACATTTTCGGTTAAGAAAGATTATAATTGAAT
GTTTACCTCGAGAAACGTGAAGCGAAAGCCACCCATTAATA
Found at i:22686853 original size:343 final size:342
Alignment explanation
Indices: 22686154--22689565 Score: 3439
Period size: 343 Copynumber: 10.0 Consensus size: 342
22686144 AGGAGCCAAC
* *
22686154 ATTACTGACTTTAAATGGTTTTATAATCTGATTATTGATTTTAAGTTGAATTTTTTTA-ATATTT
1 ATTACTCACTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACAT-TTT
** * ** *
22686218 TTGGTTAAAACAGATTATAATTGAATGTTTGCCTCGGGAAACTTGAAGTGAATGCCATCGATTGA
65 TT-GTTAAAACAGATTATAATTGAATGTTTGCCTCAAGAAACGTGAAGCAAAAGCCATCGATTGA
** * ** *
22686283 CAAGAAAAGTCCATTTATAGTCACTCATATCTTCGAAAGCCTTATTACTTACTTTAATTGGTTTT
129 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTTT
* *
22686348 ATAATCTCATTATTGATTTTAAGTTGAA-----TTACATTTTTTGTTAAAAAAGATTATAATTGA
194 ATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGA
* * * * *
22686408 ATGTTTACCTCGAGAAACGTGAGGTTAAAA-CCCTCCG-TTGA-AAGGAAAAGTCCATTTATAGT
259 ATGTTTACCTTGAGAAACATGAAG-CAAAAGCCAT-CGATTGACAA-GAAAAGTCCATTTATAGT
*
22686470 CACTCATGCCTTCAAAAGCCTT
321 CACTCATGCCTTCGAAAGCCTT
* * * *
22686492 ATTACTCGCTTTAAATGGTTTTGTAATCTCATTATTGATTTTAAGTTGAATTTTCTTAAATTTTT
1 ATTACTCACTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTT
** * * * * *
22686557 TGTCCAAATAGATTATAATTAAATGTTTGACTCAAGAAATGTGAAGCAAAAGCCATCGATTCACA
66 TGTTAAAACAGATTATAATTGAATGTTTGCCTCAAGAAACGTGAAGCAAAAGCCATCGATTGACA
* *
22686622 AGAAAAGTCCATTTTATAATCACTCATGCCTTCAAAAGCCTTATTACTCTCTTTAAATGGTTTTA
131 AGAAAAGTCCA-TTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTTTA
* * * * * *
22686687 TAATCCCATTATTGATTCTATGTTGAATTTTCTTACATTTTTGGTTAAAATAGATTCTAATTGAA
195 TAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAA
* * * *
22686752 TGTTTGCCTTAAGAAACATGAAGCAAAAGCCATCGTTTGACAAGAAAAGTCCATTTATTGTCACT
260 TGTTTACCTTGAGAAACATGAAGCAAAAGCCATCGATTGACAAGAAAAGTCCATTTATAGTCACT
22686817 CATGCCTTCGAAAGCCTT
325 CATGCCTTCGAAAGCCTT
* * * * *
22686835 ATTACTCACTTAAAATGGTTTTATAATTTGATTATTGATTTTAAGCTAAATTTTTTTAC-TTTTC
1 ATTACTCACTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTT-
* * * * * * *
22686899 TGGTTCAAACAGATTATATTTGAATGTTTGCCTCAGGAAACATGAAGCGAAAGCCATCGATTAAC
65 TTGTTAAAACAGATTATAATTGAATGTTTGCCTCAAGAAACGTGAAGCAAAAGCCATCGATTGAC
* * * *
22686964 AAGAAAAGTCCATTTATTGTCGCACATGCCTTCAAAAGCCTTATTACTCTCTTTAAATGGTTTTA
130 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTTTA
* *
22687029 TAATCTCATTATTGATTTTAAGTAGAATTTTTTTACATTTTTTGTTAAAACAGATTATAATTGAA
195 TAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAA
* ** * * * * *
22687094 TATTTACC-CCAGGAAACGTGAGGCTAAAA-CTC-TCCG-TTGTCAGGAAAAGACCATTTATAGT
260 TGTTTACCTTGA-GAAACATGAAGC-AAAAGC-CAT-CGATTGACAAGAAAAGTCCATTTATAGT
*
22687155 CACTCATGACTTC-ATAAGCCTT
321 CACTCATGCCTTCGA-AAGCCTT
* * * * * * *
22687177 ATTGCTCACTTAAAATGGTTTTATAATCTCATAATCGATTTCAAGTTGAATTTTCTTACATTTTC
1 ATTACTCACTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTT
* * * * * * * * *
22687242 AGTTAAGAA-AGTTTATAATTAAATGTTTTCCTCGAGAAATGTGAAGCGAAAGCAATCCATTGAC
66 TGTTAA-AACAGATTATAATTGAATGTTTGCCTCAAGAAACGTGAAGCAAAAGCCATCGATTGAC
* * * *
22687306 AAGAAAAGTCCATTTATAGTCACTCATACCTTCGAAAGCCTTATTACTCGCTTTAAAAGTTTTTA
130 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTTTA
* * * * * *
22687371 TAATCTCATTATTGATTTTAAGTTGAATTTTTTTGCATTTTTTTGTGAAAGCAAATTATAAATGA
195 TAATCTCATTATTGATTTTAAGTTGAATTTTTTTACA-TTTTTGGTTAAAACAGATTATAATTGA
** * * * * * *
22687436 ATGCATACCTTGGGAAACGTGAGGCTAAAA-CCCTCCG-TTGACAAGAAAAGCCCATTCATAGTC
259 ATGTTTACCTTGAGAAACATGAAGC-AAAAGCCAT-CGATTGACAAGAAAAGTCCATTTATAGTC
* * * *
22687499 ATTCTTGCCTTTGAAAGCTTT
322 ACTCATGCCTTCGAAAGCCTT
* * * * *
22687520 ATTACTCGCTTTAAATGGTTTTATAATGTCATTATTGATTTGAAGTTTAATTTTTTTATC-GTTT
1 ATTACTCACTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTA-CATTTT
* * * * * * * *
22687584 TTGCTCAAACAAATTATAATTGAATGTTTACCT-AGATAAACG-AAAGGCTAAAA-CCCTCTATT
65 TTGTTAAAACAGATTATAATTGAATGTTTGCCTCA-AGAAACGTGAA-GC-AAAAGCCATCGATT
* * * * * *
22687646 AATAGGAAAAGTCTATTTATAGTCACTCATGCCTTCAGAAGCCTTATTACTCGCTTAAAATGGTT
127 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTT
* * ** *
22687711 TTGTAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTCAGTTAAGAA-AGGTTATAAT
192 TTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAA-AACAGATTATAAT
* * * * * *
22687775 TGAATGTTTACCTCGAGAAACATGAAACGAAAGCCATCGATTAACAAGAAAAGCCCATTCATAGT
256 TGAATGTTTACCTTGAGAAACATGAAGCAAAAGCCATCGATTGACAAGAAAAGTCCATTTATAGT
* **
22687840 CACTCTTGCCTTTAAAAGCCTT
321 CACTCATGCCTTCGAAAGCCTT
* * * * * **
22687862 ATTACTCACTTAAAATAGTTTTATAATCCCATTATTGATTTTATGTTGAATTTTCTTACGCTTTT
1 ATTACTCACTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTT
* * ** * * * *
22687927 TGTTAAAACAGGTTCTAATTGAATGTTTGCCTCGGGAAACTTGAAGCAAAATCAATCGATTGATA
66 TGTTAAAACAGATTATAATTGAATGTTTGCCTCAAGAAACGTGAAGCAAAAGCCATCGATTGACA
* * *
22687992 AGAAAAATCCATTTACAGTCAGTCATGCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTTTAT
131 AGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTTTAT
* * * * *
22688057 AA-CTCATTATCGATTTTAAGTTGAA-TTTTTTACATTTTTGCTTAAAACATACTATAATTCAAT
196 AATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAAT
* * * * * * *
22688120 GTTTACTTTG-GGAACATGAGGCTAAAA-CTC-TCCG-TTAGA-ACGAAAAATTCATTTATAGTT
261 GTTTACCTTGAGAAACATGAAGC-AAAAGC-CAT-CGATT-GACAAGAAAAGTCCATTTATAGTC
*
22688180 ACTCATGCC-TCAAAAGCCTT
322 ACTCATGCCTTCGAAAGCCTT
* * * *
22688200 ATTACTCACTTAAAATGGTTTTATAATCCCATAATTGATTTTAAGTTGAATTGTTTTACA-TTTT
1 ATTACTCACTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTT
* * * * * * * *
22688264 CGATTAAGAA-AGGTTATGATTGAATGTTTCCCTCATGAAACGTGAAGCGAAAGCCATCCATTAA
66 TG-TTAA-AACAGATTATAATTGAATGTTTGCCTCAAGAAACGTGAAGCAAAAGCCATCGATTGA
* * * * *
22688328 CTAGAAAAGTCCATTTATAGTCATTCATGCCTTCGAATGCCTTATTACAT-GTTTTAAAT-GTTT
129 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTAC-TCGCTTTAAATGGTTT
* * * * * *
22688391 TATAATCTCATAATTGATTTTAAGTTGAATTATCTTACATGTTTGGTTAAAACAAATAATAATTG
193 TATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTG
* * * *
22688456 AATGTTTGCCTAG-GAAAACGTGAAGCGAAAGCCATCGATTGACAAGAAAAGTCC----AT--T-
258 AATGTTTACCTTGAG-AAACATGAAGCAAAAGCCATCGATTGACAAGAAAAGTCCATTTATAGTC
*
22688513 --T-ATGCCTTCGAAAGCCCT
322 ACTCATGCCTTCGAAAGCCTT
* *
22688531 ATTACTCACTTTAATTGGTTTTATAATCTCATTATTTATTTTAAGTTGAATTTTTTTTTACATTT
1 ATTACTCACTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAA--TTTTTTTACATTT
* * * ** * *
22688596 TTTGTTAAAACAGATTATAATTCAATGTTTACCTCGAGAAACGTGTGGTTAAAA-CCCTCTG-TT
64 TTTGTTAAAACAGATTATAATTGAATGTTTGCCTCAAGAAACGTGAAG-CAAAAGCCATC-GATT
* * * * * * *
22688659 GATAGGAAACGTCCATGTATAGTCACTCATGCCTTTAAAAGCCTTATAACAT-GCTTAAAATGGT
127 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTAC-TCGCTTTAAATGGT
* * * * *
22688723 TTTATAATCTCATAATTAATTTTAAGTTGAATTTTTTTACATTTTCGATTAAGAA-AGGTTATAA
191 TTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAA-AACAGATTATAA
* * *** * *
22688787 TTGAATGTTTACCTCGAGAAACAAGAAATGAAAGCCATCCATTGACGAA-AAAAGTCGATTTATA
255 TTGAATGTTTACCTTGAGAAACATGAAGCAAAAGCCATCGATTGAC-AAGAAAAGTCCATTTATA
* *
22688851 ATCACTCATGCCTTTGAAAGCCTT
319 GTCACTCATGCCTTCGAAAGCCTT
** ** * *
22688875 ATTACTTGCTTTAAATGGTTTTATAATC-CGATTATTGATTTTAAACTAAATTTTTTTAGATTTT
1 ATTACTCACTTTAAATGGTTTTATAATCTC-ATTATTGATTTTAAGTTGAATTTTTTTACATTTT
* * * * *
22688939 TGGTTACAACAGATTATAATTCAATGTTTGCCTCAAGAAACGTG-AGACTAAAA-CCCTCCATTG
65 TTGTTAAAACAGATTATAATTGAATGTTTGCCTCAAGAAACGTGAAG-C-AAAAGCCATCGATTG
* * * **
22689002 ACAGGAAAAGTCCATTTGA-AGTCACTCATGCGTTCGAAAGCCTTATTACTCATTTTAAATGGTT
128 ACAAGAAAAGTCCATTT-ATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTTAAATGG-T
* * ** * *
22689066 TTTGTAATCTCATTATTGATTTTATGTTGAATTTTCCTACATTTTTGGTTAAAACACATTCTAAT
191 TTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAAT
* * *
22689131 TGAATTTTTGCCTTGAGAAACATGAAGCAAAAGCCATCGTTTGACAAGAAAAGTCCATTTATAG-
256 TGAATGTTTACCTTGAGAAACATGAAGCAAAAGCCATCGATTGACAAGAAAAGTCCATTTATAGT
*
22689195 CAATTCATGCCTTCGAAAGCCTT
321 C-ACTCATGCCTTCGAAAGCCTT
* * *
22689218 ACTACTCGCTTTAATTGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTGTTTTACATTTT
1 ATTACTCACTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTT-TTTTACATTTT
* * ** * * * *
22689283 TTGTTAAAACATATTATAATTGAATGTTTACCTCGGGAAACATGAGGCTAAAACCCTTCG-TT-A
65 TTGTTAAAACAGATTATAATTGAATGTTTGCCTCAAGAAACGTGAAGC-AAAAGCCATCGATTGA
* * ** *
22689346 CTAGGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACCCGCTCAAAATAGTTT
129 C-AAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTT
* * * ** * *
22689411 TGTAATCTCATAATTGATTTTAAGTTGAATTTTATTACATTTTCAGTTAAAAAAGGTTATAATTG
193 TATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTG
* * * *
22689476 AATGTTTACCTTGAAAAACATAAAGCAAAAGCCATCGATTGGCAAGAAAAGTTCATTTATAGTCA
258 AATGTTTACCTTGAGAAACATGAAGCAAAAGCCATCGATTGACAAGAAAAGTCCATTTATAGTCA
*
22689541 CTCATGCCTTCAAAAGCCTT
323 CTCATGCCTTCGAAAGCCTT
22689561 ATTAC
1 ATTAC
22689566 CCGCTTNNNN
Statistics
Matches: 2542, Mismatches: 446, Indels: 167
0.81 0.14 0.05
Matches are distributed among these distances:
330 5 0.00
331 55 0.02
332 2 0.00
333 96 0.04
334 107 0.04
335 5 0.00
336 2 0.00
337 76 0.03
338 311 0.12
339 89 0.04
340 64 0.03
341 35 0.01
342 722 0.28
343 799 0.31
344 169 0.07
345 5 0.00
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (342 bp):
ATTACTCACTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTT
TGTTAAAACAGATTATAATTGAATGTTTGCCTCAAGAAACGTGAAGCAAAAGCCATCGATTGACA
AGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTTTAT
AATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAAT
GTTTACCTTGAGAAACATGAAGCAAAAGCCATCGATTGACAAGAAAAGTCCATTTATAGTCACTC
ATGCCTTCGAAAGCCTT
Found at i:22686924 original size:171 final size:171
Alignment explanation
Indices: 22686154--22689571 Score: 3383
Period size: 171 Copynumber: 20.1 Consensus size: 171
22686144 AGGAGCCAAC
* *
22686154 ATTACT-GACTTTAAATGGTTTTATAATCTGATTATTGATTTTAAGTTGAATTTTTTTAATATTT
1 ATTACTCG-CTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTT-ACATTT
* * * ** *
22686218 TTGGTTAAAACAGATTATAATTGAATGTTTGCCTCGGGAAACTTGAAGTGAATGCCATCGATTGA
64 TTGGTTAAAACAGATTATAATTGAATGTTTACCTCGAGAAACATGAAGCAAAAGCCATCGATTGA
** *
22686283 CAAGAAAAGTCCATTTATAGTCACTCATATCTTCGAAAGCCTT
129 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTT
** *
22686326 ATTACTTACTTTAATTGGTTTTATAATCTCATTATTGATTTTAAGTTGAA-----TTACATTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTT
* * * * * *
22686386 TGTTAAAAAAGATTATAATTGAATGTTTACCTCGAGAAACGTGAGGTTAAAA-CCCTCCG-TTGA
66 GGTTAAAACAGATTATAATTGAATGTTTACCTCGAGAAACATGAAG-CAAAAGCCAT-CGATTGA
22686449 -AAGGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTT
129 CAA-GAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTT
* * *
22686492 ATTACTCGCTTTAAATGGTTTTGTAATCTCATTATTGATTTTAAGTTGAATTTTCTTAAATTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTT
* ** * * * ** *
22686557 TGTCCAAATAGATTATAATTAAATGTTTGA-CTCAAGAAATGTGAAGCAAAAGCCATCGATTCAC
66 GGTTAAAACAGATTATAATTGAATGTTT-ACCTCGAGAAACATGAAGCAAAAGCCATCGATTGAC
*
22686621 AAGAAAAGTCCATTTTATAATCACTCATGCCTTCAAAAGCCTT
130 AAGAAAAGTCCA-TTTATAGTCACTCATGCCTTCAAAAGCCTT
* * * * *
22686664 ATTACTCTCTTTAAATGGTTTTATAATCCCATTATTGATTCTATGTTGAATTTTCTTACATTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTT
* * * ** *
22686729 GGTTAAAATAGATTCTAATTGAATGTTTGCCTTAAGAAACATGAAGCAAAAGCCATCGTTTGACA
66 GGTTAAAACAGATTATAATTGAATGTTTACCTCGAGAAACATGAAGCAAAAGCCATCGATTGACA
* *
22686794 AGAAAAGTCCATTTATTGTCACTCATGCCTTCGAAAGCCTT
131 AGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTT
* * * * * *
22686835 ATTACTCACTTAAAATGGTTTTATAATTTGATTATTGATTTTAAGCTAAATTTTTTTAC-TTTTC
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTT-
* * * * *
22686899 TGGTTCAAACAGATTATATTTGAATGTTTGCCTC-AGGAAACATGAAGCGAAAGCCATCGATTAA
65 TGGTTAAAACAGATTATAATTGAATGTTTACCTCGA-GAAACATGAAGCAAAAGCCATCGATTGA
* * *
22686963 CAAGAAAAGTCCATTTATTGTCGCACATGCCTTCAAAAGCCTT
129 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTT
* *
22687006 ATTACTCTCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTAGAATTTTTTTACATTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTT
* * * * *
22687071 TGTTAAAACAGATTATAATTGAATATTTACC-CCAGGAAACGTGAGGCTAAAA-CTC-TCCG-TT
66 GGTTAAAACAGATTATAATTGAATGTTTACCTCGA-GAAACATGAAGC-AAAAGC-CAT-CGATT
* * * * *
22687132 GTCAGGAAAAGACCATTTATAGTCACTCATGACTTCATAAGCCTT
127 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTT
* * * * * * * *
22687177 ATTGCTCACTTAAAATGGTTTTATAATCTCATAATCGATTTCAAGTTGAATTTTCTTACATTTTC
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTT
* * * * ** * * *
22687242 AGTTAAGAA-AGTTTATAATTAAATGTTTTCCTCGAGAAATGTGAAGCGAAAGCAATCCATTGAC
66 GGTTAA-AACAGATTATAATTGAATGTTTACCTCGAGAAACATGAAGCAAAAGCCATCGATTGAC
* *
22687306 AAGAAAAGTCCATTTATAGTCACTCATACCTTCGAAAGCCTT
130 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTT
* * *
22687348 ATTACTCGCTTTAAAAGTTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTGCATTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACA-TTTT
* * * * * ** * * * * *
22687413 TTGTGAAAGCAAATTATAAATGAATGCATACCTTGGGAAACGTGAGGCTAAAA-CCCTCCG-TTG
65 TGGTTAAAACAGATTATAATTGAATGTTTACCTCGAGAAACATGAAGC-AAAAGCCAT-CGATTG
* * * * ** *
22687476 ACAAGAAAAGCCCATTCATAGTCATTCTTGCCTTTGAAAGCTTT
128 ACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTT
* * * *
22687520 ATTACTCGCTTTAAATGGTTTTATAATGTCATTATTGATTTGAAGTTTAATTTTTTTATCGTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTA-CATTTT
* * * * * * *
22687585 T-GCTCAAACAAATTATAATTGAATGTTTACCTAGATAAAC--GAAAGGCTAAAA-CCCTCTATT
65 TGGTTAAAACAGATTATAATTGAATGTTTACCTCGAGAAACATG-AA-GC-AAAAGCCATCGATT
* * * * *
22687646 AATAGGAAAAGTCTATTTATAGTCACTCATGCCTTCAGAAGCCTT
127 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTT
* * * *
22687691 ATTACTCGCTTAAAATGGTTTTGTAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTC
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTT
* * * * *
22687756 AGTTAAGAA-AGGTTATAATTGAATGTTTACCTCGAGAAACATGAAACGAAAGCCATCGATTAAC
66 GGTTAA-AACAGATTATAATTGAATGTTTACCTCGAGAAACATGAAGCAAAAGCCATCGATTGAC
* * * *
22687820 AAGAAAAGCCCATTCATAGTCACTCTTGCCTTTAAAAGCCTT
130 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTT
* * * * * * *
22687862 ATTACTCACTTAAAATAGTTTTATAATCCCATTATTGATTTTATGTTGAATTTTCTTACGCTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTAC-ATTTT
* * * * * * * *
22687927 T-GTTAAAACAGGTTCTAATTGAATGTTTGCCTCGGGAAACTTGAAGCAAAATCAATCGATTGAT
65 TGGTTAAAACAGATTATAATTGAATGTTTACCTCGAGAAACATGAAGCAAAAGCCATCGATTGAC
* * *
22687991 AAGAAAAATCCATTTACAGTCAGTCATGCCTTCAAAAGCCTT
130 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTT
*
22688033 ATTACTCGCTTTAAATGGTTTTATAA-CTCATTATCGATTTTAAGTTGAA-TTTTTTACATTTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTT
* * * * * * * *
22688096 GCTTAAAACATACTATAATTCAATGTTTACTTTG-GGAACATGAGGCTAAAA-CTC-TCCG-TTA
66 GGTTAAAACAGATTATAATTGAATGTTTACCTCGAGAAACATGAAGC-AAAAGC-CAT-CGATT-
* * * *
22688157 GA-ACGAAAAATTCATTTATAGTTACTCATGCC-TCAAAAGCCTT
127 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTT
* * * * * *
22688200 ATTACTCACTTAAAATGGTTTTATAATCCCATAATTGATTTTAAGTTGAATTGTTTTACATTTTC
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTT
* * * * * * * *
22688265 GATTAAGAA-AGGTTATGATTGAATGTTTCCCTC-ATGAAACGTGAAGCGAAAGCCATCCATTAA
66 GGTTAA-AACAGATTATAATTGAATGTTTACCTCGA-GAAACATGAAGCAAAAGCCATCGATTGA
* * * *
22688328 CTAGAAAAGTCCATTTATAGTCATTCATGCCTTCGAATGCCTT
129 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTT
* * * * *
22688371 ATTACAT-GTTTTAAAT-GTTTTATAATCTCATAATTGATTTTAAGTTGAATTATCTTACATGTT
1 ATTAC-TCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTT
* * * * * *
22688434 TGGTTAAAACAAATAATAATTGAATGTTTGCCTAG-GAAAACGTGAAGCGAAAGCCATCGATTGA
65 TGGTTAAAACAGATTATAATTGAATGTTTACCTCGAG-AAACATGAAGCAAAAGCCATCGATTGA
* *
22688498 CAAGAAAAGTCC----AT--T---T-ATGCCTTCGAAAGCCCT
129 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTT
* * *
22688531 ATTACTCACTTTAATTGGTTTTATAATCTCATTATTTATTTTAAGTTGAATTTTTTTTTACATTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAA--TTTTTTTACATTT
* * * ** * *
22688596 TTTGTTAAAACAGATTATAATTCAATGTTTACCTCGAGAAACGTGTGGTTAAAA-CCCTCTG-TT
64 TTGGTTAAAACAGATTATAATTGAATGTTTACCTCGAGAAACATGAAG-CAAAAGCCATC-GATT
* * * * *
22688659 GATAGGAAACGTCCATGTATAGTCACTCATGCCTTTAAAAGCCTT
127 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTT
* * * *
22688704 ATAACAT-GCTTAAAATGGTTTTATAATCTCATAATTAATTTTAAGTTGAATTTTTTTACATTTT
1 ATTAC-TCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTT
* * * * *** *
22688768 CGATTAAGAA-AGGTTATAATTGAATGTTTACCTCGAGAAACAAGAAATGAAAGCCATCCATTGA
65 TGGTTAA-AACAGATTATAATTGAATGTTTACCTCGAGAAACATGAAGCAAAAGCCATCGATTGA
* * **
22688832 CGAA-AAAAGTCGATTTATAATCACTCATGCCTTTGAAAGCCTT
129 C-AAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTT
* ** * *
22688875 ATTACTTGCTTTAAATGGTTTTATAATC-CGATTATTGATTTTAAACTAAATTTTTTTAGATTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTC-ATTATTGATTTTAAGTTGAATTTTTTTACATTTT
* * * * * * *
22688939 TGGTTACAACAGATTATAATTCAATGTTTGCCTCAAGAAACGTG-AGACTAAAA-CCCTCCATTG
65 TGGTTAAAACAGATTATAATTGAATGTTTACCTCGAGAAACATGAAG-C-AAAAGCCATCGATTG
* * *
22689002 ACAGGAAAAGTCCATTTGA-AGTCACTCATGCGTTCGAAAGCCTT
128 ACAAGAAAAGTCCATTT-ATAGTCACTCATGCCTTCAAAAGCCTT
** * * **
22689046 ATTACTCATTTTAAATGGTTTTTGTAATCTCATTATTGATTTTATGTTGAATTTTCCTACATTTT
1 ATTACTCGCTTTAAATGG-TTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTT
* * * * * *
22689111 TGGTTAAAACACATTCTAATTGAATTTTTGCCTTGAGAAACATGAAGCAAAAGCCATCGTTTGAC
65 TGGTTAAAACAGATTATAATTGAATGTTTACCTCGAGAAACATGAAGCAAAAGCCATCGATTGAC
* *
22689176 AAGAAAAGTCCATTTATAG-CAATTCATGCCTTCGAAAGCCTT
130 AAGAAAAGTCCATTTATAGTC-ACTCATGCCTTCAAAAGCCTT
* *
22689218 ACTACTCGCTTTAATTGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTGTTTTACATTTT
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTT-TTTTACATTTT
* * * * * *
22689283 TTGTTAAAACATATTATAATTGAATGTTTACCTCGGGAAACATGAGGCTAAAACCCTTCG-TT-A
65 TGGTTAAAACAGATTATAATTGAATGTTTACCTCGAGAAACATGAAGC-AAAAGCCATCGATTGA
*
22689346 CTAGGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTT
129 C-AAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTT
* ** * * * * *
22689390 ATTACCCGCTCAAAATAGTTTTGTAATCTCATAATTGATTTTAAGTTGAATTTTATTACATTTTC
1 ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTT
* * * * * * *
22689455 AGTTAAAAAAGGTTATAATTGAATGTTTACCTTGAAAAACATAAAGCAAAAGCCATCGATTGGCA
66 GGTTAAAACAGATTATAATTGAATGTTTACCTCGAGAAACATGAAGCAAAAGCCATCGATTGACA
*
22689520 AGAAAAGTTCATTTATAGTCACTCATGCCTTCAAAAGCCTT
131 AGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTT
*
22689561 ATTACCCGCTT
1 ATTACTCGCTT
22689572 NNNNNNNNNN
Statistics
Matches: 2677, Mismatches: 467, Indels: 205
0.80 0.14 0.06
Matches are distributed among these distances:
159 1 0.00
160 26 0.01
161 32 0.01
163 65 0.02
164 6 0.00
165 2 0.00
166 139 0.05
167 44 0.02
168 63 0.02
169 83 0.03
170 208 0.08
171 1301 0.49
172 631 0.24
173 75 0.03
174 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (171 bp):
ATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTT
GGTTAAAACAGATTATAATTGAATGTTTACCTCGAGAAACATGAAGCAAAAGCCATCGATTGACA
AGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTT
Found at i:22687707 original size:514 final size:509
Alignment explanation
Indices: 22686166--22689571 Score: 3399
Period size: 514 Copynumber: 6.7 Consensus size: 509
22686156 TACTGACTTT
* * * *
22686166 AAATGGTTTTATAATCTGATTATTGATTTTAAGTTGAATTTTTTTAATATTTTTGGTTAA-AACA
1 AAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTT-ACA-TTTTCGTTAAGAA-A
* * * * * * *
22686230 GATTATAATTGAATGTTTGCCTCGGGAAACTTGAAGTGAATGCCATCGATTGACAAGAAAAGTCC
63 GGTTATAATTGAATGTTTACCTCGAGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCC
** ** **
22686295 ATTTATAGTCACTCATATCTTCGAAAGCCTTATTACTTACTTTAATTGGTTTTATAATCTCATTA
128 ATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAA-AAGTTTTATAATCTCATTA
* * *
22686360 TTGATTTTAAGTTGAA-----TTACATTTTTTGTTAAAAAAGATTATAATTGAATGTTTACCTCG
192 TTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAACAA-ATTATAATTGAATGTTTGCCTCG
* * * *
22686420 AGAAACGTGAGGTTAAAACCCTCCG-TTGA-AAGGAAAAGTCCATTTATAGTCACTCATGCCTTC
256 GGAAACGTGAAGCTAAAACCAT-CGATTGACAA-GAAAAGTCCATTTATAGTCACTCATGCCTTC
*
22686483 AAAAGCCTTATTACTCGCTTTAAATGGTTTTGTAATCTCATTATTGATTTTAAGTTGAATTTTCT
319 AAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTT-T
* * ** * * * *
22686548 TAAATTTTTTGTCCAAATAGATTATAATTAAATGTTTGA-CTCA-AGAAATGTGAA-GC-AAAAG
383 TTACTTTTTTGTTAAAACAGATTATAATTGAATGTTT-ACCT-AGAGAAACG-AAAGGCTAAAA-
* * * * * *
22686609 CCATC-GATTCACAAGAAAAGTCCATTTTATAATCACTCATGCCTTCAAAAGCCTTATTACTCTC
444 CCCTCTG-TTAATAGGAAAAGTCCA-TTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGC
*
22686673 TTT
507 TTA
* * * * * *
22686676 AAATGGTTTTATAATCCCATTATTGATTCTATGTTGAATTTTCTTACATTTTTGGTTAA-AATAG
1 AAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACA-TTTTCGTTAAGAA-AG
* * * ** * **
22686740 ATTCTAATTGAATGTTTGCCTTAAGAAACATGAAGCAAAAGCCATCGTTTGACAAGAAAAGTCCA
64 GTTATAATTGAATGTTTACCTCGAGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCA
* * * *
22686805 TTTATTGTCACTCATGCCTTCGAAAGCCTTATTACTCAC-TTAAAATGGTTTTATAATTTGATTA
129 TTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAAA--GTTTTATAATCTCATTA
* * * *
22686869 TTGATTTTAAGCTAAATTTTTTTAC-TTTTCTGGTTCAAACAGATTATATTTGAATGTTTGCCTC
192 TTGATTTTAAGTTGAATTTTTTTACATTTT-TGGTT-AAACAAATTATAATTGAATGTTTGCCTC
* * * * * * * *
22686933 AGGAAACATGAAGCGAAAGCCATCGATTAACAAGAAAAGTCCATTTATTGTCGCACATGCCTTCA
255 GGGAAACGTGAAGCTAAAACCATCGATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCA
* *
22686998 AAAGCCTTATTACTCTCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTAGAATTTTTTT
320 AAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTT
* * ** *
22687063 ACATTTTTTGTTAAAACAGATTATAATTGAATATTTACCCCAG-GAAACGTGAGGCTAAAACTCT
385 AC-TTTTTTGTTAAAACAGATTATAATTGAATGTTTA-CCTAGAGAAACGAAAGGCTAAAACCCT
* * * * * * *
22687127 CCGTT-GTCAGGAAAAGACCATTTATAGTCACTCATGACTTCATAAGCCTTATTGCTCACTTA
448 CTGTTAAT-AGGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTA
* * * *
22687189 AAATGGTTTTATAATCTCATAATCGATTTCAAGTTGAATTTTCTTACATTTTCAGTTAAGAAAGT
1 AAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTC-GTTAAGAAAGG
* * ** *
22687254 TTATAATTAAATGTTTTCCTCGAGAAATGTGAAGCGAAAGCAATCCATTGACAAGAAAAGTCCAT
65 TTATAATTGAATGTTTACCTCGAGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCAT
*
22687319 TTATAGTCACTCATACCTTCGAAAGCCTTATTACTCGCTTTAAAAGTTTTTATAATCTCATTATT
130 TTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAAAG-TTTTATAATCTCATTATT
* * * * ** * *
22687384 GATTTTAAGTTGAATTTTTTTGCATTTTTTTGTGAAAGCAAATTATAAATGAATGCATACCTTGG
194 GATTTTAAGTTGAATTTTTTTACA-TTTTTGGTTAAA-CAAATTATAATTGAATGTTTGCCTCGG
* * * * * * **
22687449 GAAACGTGAGGCTAAAACCCTCCG-TTGACAAGAAAAGCCCATTCATAGTCATTCTTGCCTTTGA
257 GAAACGTGAAGCTAAAACCAT-CGATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAA
* * * *
22687513 AAGCTTTATTACTCGCTTTAAATGGTTTTATAATGTCATTATTGATTTGAAGTTTAATTTTTTTA
321 AAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTA
* * * * *
22687578 TCGTTTTTGCTCAAACAAATTATAATTGAATGTTTACCTAGATAAACGAAAGGCTAAAACCCTCT
386 -CTTTTTTGTTAAAACAGATTATAATTGAATGTTTACCTAGAGAAACGAAAGGCTAAAACCCTCT
* * *
22687643 ATTAATAGGAAAAGTCTATTTATAGTCACTCATGCCTTCAGAAGCCTTATTACTCGCTTA
450 GTTAATAGGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTA
*
22687703 AAATGGTTTTGTAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTCAGTTAAGAAAGG
1 AAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTC-GTTAAGAAAGG
* * * *
22687768 TTATAATTGAATGTTTACCTCGAGAAACATGAAACGAAAGCCATCGATTAACAAGAAAAGCCCAT
65 TTATAATTGAATGTTTACCTCGAGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCAT
* * ** * * *
22687833 TCATAGTCACTCTTGCCTTTAAAAGCCTTATTACTCACTTAAAATAGTTTTATAATCCCATTATT
130 TTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAA-AGTTTTATAATCTCATTATT
* * * ** *
22687898 GATTTTATGTTGAATTTTCTTACGCTTTTT-GTTAAAACAGGTTCTAATTGAATGTTTGCCTCGG
194 GATTTTAAGTTGAATTTTTTTAC-ATTTTTGGTT-AAACAAATTATAATTGAATGTTTGCCTCGG
* * * * * *
22687962 GAAACTTGAAGC-AAAATCAATCGATTGATAAGAAAAATCCATTTACAGTCAGTCATGCCTTCAA
257 GAAACGTGAAGCTAAAA-CCATCGATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAA
*
22688026 AAGCCTTATTACTCGCTTTAAATGGTTTTATAA-CTCATTATCGATTTTAAGTTGAA-TTTTTTA
321 AAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTA
* * * * * * * * *
22688089 CATTTTTGCTTAAAACATACTATAATTCAATGTTTACTTTG-GGAAC-ATGAGGCTAAAACTCTC
386 CTTTTTTG-TTAAAACAGATTATAATTGAATGTTTACCTAGAGAAACGA-AAGGCTAAAACCCTC
* * * * * *
22688152 CGTTAGA-ACGAAAAATTCATTTATAGTTACTCATGCC-TCAAAAGCCTTATTACTCACTTA
449 TGTTA-ATAGGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTA
* *
22688212 AAATGGTTTTATAATCCCATAATTGATTTTAAGTTGAATTGTTTTACATTTTCGATTAAGAAAGG
1 AAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTCG-TTAAGAAAGG
* * * * *
22688277 TTATGATTGAATGTTTCCCTC-ATGAAACGTGAAGCGAAAGCCATCCATTAACTAGAAAAGTCCA
65 TTATAATTGAATGTTTACCTCGA-GAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCA
* * * * *
22688341 TTTATAGTCATTCATGCCTTCGAATGCCTTATTACAT-GTTTTAAATGTTTTATAATCTCATAAT
129 TTTATAGTCACTCATGCCTTCGAAAGCCTTATTAC-TCGCTTTAAAAGTTTTATAATCTCATTAT
* * * * *
22688405 TGATTTTAAGTTGAATTATCTTACATGTTTGGTTAAAACAAATAATAATTGAATGTTTGCCTAGG
193 TGATTTTAAGTTGAATTTTTTTACATTTTTGGTT-AAACAAATTATAATTGAATGTTTGCCTCGG
* * * *
22688470 AAAACGTGAAGCGAAAGCCATCGATTGACAAGAAAAGTCC----AT--T---T-ATGCCTTCGAA
257 GAAACGTGAAGCTAAAACCATCGATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAA
* * * *
22688525 AGCCCTATTACTCACTTTAATTGGTTTTATAATCTCATTATTTATTTTAAGTTGAATTTTTTTTT
322 AGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAA--TTTTTTT
* * *** *
22688590 ACATTTTTTGTTAAAACAGATTATAATTCAATGTTTACCTCGAGAAACGTGTGGTTAAAACCCTC
385 AC-TTTTTTGTTAAAACAGATTATAATTGAATGTTTACCTAGAGAAACGAAAGGCTAAAACCCTC
* * * * *
22688655 TGTTGATAGGAAACGTCCATGTATAGTCACTCATGCCTTTAAAAGCCTTATAACAT-GCTTA
449 TGTTAATAGGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTAC-TCGCTTA
*
22688716 AAATGGTTTTATAATCTCATAATTAATTTTAAGTTGAATTTTTTTACATTTTCGATTAAGAAAGG
1 AAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTCG-TTAAGAAAGG
* ** *
22688781 TTATAATTGAATGTTTACCTCGAGAAACAAGAAATGAAAGCCATCCATTGACGAA-AAAAGTCGA
65 TTATAATTGAATGTTTACCTCGAGAAACATGAAGCGAAAGCCATCCATTGAC-AAGAAAAGTCCA
* * * *
22688845 TTTATAATCACTCATGCCTTTGAAAGCCTTATTACTTGCTTTAAATGGTTTTATAATC-CGATTA
129 TTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAA-AGTTTTATAATCTC-ATTA
** * * * * *
22688909 TTGATTTTAAACTAAATTTTTTTAGATTTTTGGTTACAACAGATTATAATTCAATGTTTGCCTCA
192 TTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTA-AACAAATTATAATTGAATGTTTGCCTCG
* * * * *
22688974 AGAAACGTG-AGACTAAAACCCTCCATTGACAGGAAAAGTCCATTTGA-AGTCACTCATGCGTTC
256 GGAAACGTGAAG-CTAAAACCATCGATTGACAAGAAAAGTCCATTT-ATAGTCACTCATGCCTTC
* ** * * *
22689037 GAAAGCCTTATTACTCATTTTAAATGGTTTTTGTAATCTCATTATTGATTTTATGTTGAATTTTC
319 AAAAGCCTTATTACTCGCTTTAAATGG-TTTTATAATCTCATTATTGATTTTAAGTTGAATTTTT
* * * * * * *
22689102 CTACATTTTTGGTTAAAACACATTCTAATTGAATTTTTGCCTTGAGAAAC-ATGAA-GC-AAAAG
383 TTAC-TTTTTTGTTAAAACAGATTATAATTGAATGTTTACCTAGAGAAACGA--AAGGCTAAAA-
* * * * * * *
22689164 CCATC-GTTTGACAAGAAAAGTCCATTTATAG-CAATTCATGCCTTCGAAAGCCTTACTACTCGC
444 CCCTCTG-TTAATAGGAAAAGTCCATTTATAGTC-ACTCATGCCTTCAAAAGCCTTATTACTCGC
*
22689227 TTT
507 TTA
* * *
22689230 AATTGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTGTTTTACATTTTTTGTTAA-AACA
1 AAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTT-TTTTACA-TTTTCGTTAAGAA-A
** * * * * * * * *
22689294 TATTATAATTGAATGTTTACCTCGGGAAACATGAGGCTAAAACCCTTCGTT-ACTAGGAAAAGTC
63 GGTTATAATTGAATGTTTACCTCGAGAAACATGAAGCGAAAGCCATCCATTGAC-AAGAAAAGTC
* * ** * *
22689358 CATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACCCGCTCAAAATAGTTTTGTAATCTCATA
127 CATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAA-AGTTTTATAATCTCATT
* ** *
22689423 ATTGATTTTAAGTTGAATTTTATTACATTTTCAGTTAAA-AAAGGTTATAATTGAATGTTTACCT
191 ATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAACAAA--TTATAATTGAATGTTTGCCT
* ** * * * *
22689487 TGAAAAACATAAAGC-AAAAGCCATCGATTGGCAAGAAAAGTTCATTTATAGTCACTCATGCCTT
254 CGGGAAACGTGAAGCTAAAA-CCATCGATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTT
*
22689551 CAAAAGCCTTATTACCCGCTT
318 CAAAAGCCTTATTACTCGCTT
22689572 NNNNNNNNNN
Statistics
Matches: 2400, Mismatches: 408, Indels: 171
0.81 0.14 0.06
Matches are distributed among these distances:
498 39 0.02
499 22 0.01
502 38 0.02
503 50 0.02
504 174 0.07
505 99 0.04
507 4 0.00
508 103 0.04
509 311 0.13
510 93 0.04
511 34 0.01
512 30 0.01
513 333 0.14
514 762 0.32
515 271 0.11
516 37 0.02
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (509 bp):
AAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTCGTTAAGAAAGGT
TATAATTGAATGTTTACCTCGAGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATT
TATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAAAGTTTTATAATCTCATTATTGA
TTTTAAGTTGAATTTTTTTACATTTTTGGTTAAACAAATTATAATTGAATGTTTGCCTCGGGAAA
CGTGAAGCTAAAACCATCGATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCC
TTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACTTTT
TTGTTAAAACAGATTATAATTGAATGTTTACCTAGAGAAACGAAAGGCTAAAACCCTCTGTTAAT
AGGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTA
Found at i:22690560 original size:171 final size:171
Alignment explanation
Indices: 22689980--22693620 Score: 3359
Period size: 171 Copynumber: 21.3 Consensus size: 171
22689970 CATCAATAGT
* * * *
22689980 AAAAGTTCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTAAAATGGTTTTATAA
1 AAAAGTCCATTTATAGTCACTCATGCCTTTAGAAGCCTTATTACTCGCTTTAAATGGTTTTATAA
* * * * * * *
22690045 TCCCATAATTAATTTTAAGTTGAACTTTTTTACATTTTCAGTTAAGAA-AGGTTATGATTGAATG
66 TCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTT-TGTTAA-AACAGATTATAATTGAATG
* * * * * *
22690109 TTTCCCTC-ATGAAACGTGAAGCGAAAGCCATCC-ATTAACTAG
129 TTTACCTCGA-GAAACATGAAGCTAAAACCATCCGATTGACAAG
* * *
22690151 AAAAGTCCATTTATAGTCATTCATGCC-TCA-AATGCCTTATTACTTGCTTTAAATGGTTTTATA
1 AAAAGTCCATTTATAGTCACTCATGCCTTTAGAA-GCCTTATTACTCGCTTTAAATGGTTTTATA
* * * * * *
22690214 ATCTCA-TAGTTGATTTTAAGTTAAATTATCTTACATGTTTGGTTAAAACAGATAATGATT-AAT
65 ATCTCATTA-TTGATTTTAAGTTGAATTTTTTTACAT-TTTTGTTAAAACAGATTATAATTGAAT
* * * **
22690277 GTTTGCCTAG-GCAAACGTGAAG-TGAATGCCAT-CGATTGACAAG
128 GTTTACCTCGAG-AAACATGAAGCT-AAAACCATCCGATTGACAAG
* * * * * * *
22690320 AAAATTCCATTTATAGCCATTCATGCC-TTCGAAAGCCCTATTACTCACTTTAATTGGTTTTATA
1 AAAAGTCCATTTATAGTCACTCATGCCTTTAG-AAGCCTTATTACTCGCTTTAAATGGTTTTATA
* * *
22690384 ATCTCATTATTTATTTTAAGTTGAATTATTTTTA-ATTTGTTTTTAAAACAGATTATAATTCAAT
65 ATCTCATTATTGATTTTAAGTTGAATT-TTTTTACATTT-TTGTTAAAACAGATTATAATTGAAT
* * ** * *
22690448 GTTTAGCTCAAGAAATGTGAGGCTAAAACTC-TCCG-TTGACAGG
128 GTTTACCTCGAGAAACATGAAGCTAAAAC-CATCCGATTGACAAG
* * *
22690491 AAACA-TCCATGTATAGTCACTCATGCCTTTAGAAGCCTTATAACAT-GCTTAAAATGGTTTTAT
1 AAA-AGTCCATTTATAGTCACTCATGCCTTTAGAAGCCTTATTAC-TCGCTTTAAATGGTTTTAT
* * * * * *
22690554 AATCTCATAATTAATTTTAAGATGAATTTTTTTCCATTTTCAGTTAAGAA-AGGTTATAATTGAA
64 AATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTT-TGTTAA-AACAGATTATAATTGAA
* * *
22690618 TGTTTACCTCGAGAAACGA-GAA-ATGAAAGCCATCC-ATTGACAAA
127 TGTTTACCTCGAGAAAC-ATGAAGCT-AAAACCATCCGATTGACAAG
* * * * *
22690662 AAAAGTCCATATATAGTCACTCATCCCTTTCGAAAGCCTTATTACTCACTTTAAATGGTTTCATA
1 AAAAGTCCATTTATAGTCACTCATGCCTTTAG-AAGCCTTATTACTCGCTTTAAATGGTTTTATA
* * ** * * *
22690727 ATATGATTATTGATTTTAAACTGAATTTTCTTACATTTTTGGTTACAACAAATTATAATTGAATG
65 ATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTT-GTTAAAACAGATTATAATTGAATG
* * * * * * * *
22690792 TTTGCCTTGAGAAACGTGAGGCTAAAACCCTCC-TTTGGCAGG
129 TTTACCTCGAGAAACATGAAGCTAAAACCATCCGATTGACAAG
* * * * *
22690834 AAACGTCCATTTATAGTCACTCATGCC-TTCGAAAGCCTTATTACTGGTTTTAAATGGTTTTGTA
1 AAAAGTCCATTTATAGTCACTCATGCCTTTAG-AAGCCTTATTACTCGCTTTAAATGGTTTTATA
* * * *
22690898 ATCGCATTATTGATTTTATA-TTGAATTTTCTTACATTTTTGGTTAAAACATATTCTAATTGAAT
65 ATCTCATTATTGATTTTA-AGTTGAATTTTTTTACATTTTT-GTTAAAACAGATTATAATTGAAT
* * *
22690962 TTTTGCCTCGAGAAACATGAAGC-AAAAGCCAT-CGTTTGACAAG
128 GTTTACCTCGAGAAACATGAAGCTAAAA-CCATCCGATTGACAAG
* * * * ** * *
22691005 AAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATAAGTCGCTCAAAATGGTTTTGTGA
1 AAAAGTCCATTTATAGTCACTCATGCCTTTAGAAGCCTTATTACTCGCTTTAAATGGTTTTATAA
* * ** *
22691070 TCTCATAATTGATTTTAAGTTGAATTTTATTACATTTTTGGTTAAGAA-AGGCTATAAATGAATG
66 TCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTT-GTTAA-AACAGATTATAATTGAATG
* *
22691134 TTTACCTCGAAAAACGTGAAGC-AAAAGCCAT-CGATT-AGCAAG
129 TTTACCTCGAGAAACATGAAGCTAAAA-CCATCCGATTGA-CAAG
* * * * * *
22691176 AAAAGTTCGTTTATAGTCACTCATGCCTTCAAAAGTCTTATTACTCACTTTAAATGGTTTTATAA
1 AAAAGTCCATTTATAGTCACTCATGCCTTTAGAAGCCTTATTACTCGCTTTAAATGGTTTTATAA
* * * *
22691241 TCCCATTATTGATTTTATGTTGAATTTTCTTACATTTTTTGTTAAAACAGATAATAATTGAATGT
66 TCTCATTATTGATTTTAAGTTGAATTTTTTTACA-TTTTTGTTAAAACAGATTATAATTGAATGT
* * * * * *
22691306 GTGCCT-TAGGAAACTTGAAGCGAAATCCAT-CGATTGACAAG
130 TTACCTCGA-GAAACATGAAGCTAAAACCATCCGATTGACAAG
* * * *
22691347 AAAAATCCATTTACAGTCAGTCATGCCTTT-GAAAGCCTTATTACTCGCTTTAAATGGTTTTAGA
1 AAAAGTCCATTTATAGTCACTCATGCCTTTAG-AAGCCTTATTACTCGCTTTAAATGGTTTTATA
*
22691411 AACTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTTGTTAAAACAGATTATAATTGAATG
65 ATCTCATTATTGATTTTAAGTTGAATTTTTTTACA-TTTTTGTTAAAACAGATTATAATTGAATG
* * *
22691476 TTTACCTCGGGAAACATGAGGCTAAAACCCTCCG-TT-A-ATAG
129 TTTACCTCGAGAAACATGAAGCTAAAACCATCCGATTGACA-AG
* * * *
22691517 TAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTAAAATGGTTTTCTA
1 -AAAAGTCCATTTATAGTCACTCATGCCTTTAGAAGCCTTATTACTCGCTTTAAATGGTTTTATA
* * * * *
22691582 ATCCCATAATTGATTTTAAGTTGAATTGTTTTACATTTTCGATTAAGAA-AGGTTATAATTGAAT
65 ATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTG-TTAA-AACAGATTATAATTGAAT
* * *
22691646 GTTTACCTCGAGAAACATGAAGCGAAAGCCATCC-ATTGACGAG
128 GTTTACCTCGAGAAACATGAAGCTAAAACCATCCGATTGACAAG
* * *
22691689 AAAAGTCCATTTATAGTCACTCTTGCC-TTCGAAAGCCTTATTACTTGCTTTAAATGGTTTTATA
1 AAAAGTCCATTTATAGTCACTCATGCCTTTAG-AAGCCTTATTACTCGCTTTAAATGGTTTTATA
* * ** * * * * *
22691753 ATATGATTATCAATTTTAAAG-TGACTTTTTTGACATTTTGGTTACAACA-ATTTAGAATTGAAT
65 ATCTCATTATTGATTTT-AAGTTGAATTTTTTTACATTTTTGTTAAAACAGA-TTATAATTGAAT
* * * * ** *
22691816 GTTTGCCTCGGGAAACTTAAAG-TGAATGCCAT-CGATTGTCAAG
128 GTTTACCTCGAGAAACATGAAGCT-AAAACCATCCGATTGACAAG
* * * * *
22691859 AAAAGTCCATTTATAGTCACTCATGTCTTCAAAAGCCTTATTACTCGTTTTAAATGGTTTTGTAA
1 AAAAGTCCATTTATAGTCACTCATGCCTTTAGAAGCCTTATTACTCGCTTTAAATGGTTTTATAA
* * * * * *
22691924 TCTCATTATTGAATTTAAGTTAAATTTTCTTAAATATTTGGTTAAAACGGATTATAATTGAATGT
66 TCTCATTATTGATTTTAAGTTGAATTTTTTTACAT-TTTTGTTAAAACAGATTATAATTGAATGT
* * *
22691989 TTGCCTTGAGAAACTTGAAGC-AAAAGCCAT-CGATTGACAAG
130 TTACCTCGAGAAACATGAAGCTAAAA-CCATCCGATTGACAAG
* * * * *
22692030 AAAAATCCATTTATAGTCATTCATGAC-TTCGAAAGCCTTATTACTCTCTTTAAATGGTTTTATA
1 AAAAGTCCATTTATAGTCACTCATGCCTTTAG-AAGCCTTATTACTCGCTTTAAATGGTTTTATA
* * * * * *
22692094 ATCCCATTATTAATATTATGTTGAATTTTCTTACATTTTTTGTTAAAACAGATTCTAATTGAATG
65 ATCTCATTATTGATTTTAAGTTGAATTTTTTTACA-TTTTTGTTAAAACAGATTATAATTGAATG
* * * * *
22692159 TTTTCCTTGAGAAACATGAAGCGAAAGCCAT-CGAATGACAAG
129 TTTACCTCGAGAAACATGAAGCTAAAACCATCCGATTGACAAG
* * * *
22692201 AAAAGTCCATTTATTGTCGCTCATGCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTTTATAA
1 AAAAGTCCATTTATAGTCACTCATGCCTTTAGAAGCCTTATTACTCGCTTTAAATGGTTTTATAA
** * *
22692266 TCTCATTATTGATTTTTAA-TTGAAATTTTTTATATTTTTTTATTAAAACAAATTATAATTGAAT
66 TCTCATTATTGA-TTTTAAGTTG-AATTTTTT-TACATTTTTGTTAAAACAGATTATAATTGAAT
* * * * *
22692330 GTTTACCTC-AGGAAACAT-ATGGCTAAAACCCTCCG-TTAATAGG
128 GTTTACCTCGA-GAAACATGA-AGCTAAAACCATCCGATTGACAAG
* * * * *
22692373 AAAAGTCAATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTAAAATAGTTTTATAA
1 AAAAGTCCATTTATAGTCACTCATGCCTTTAGAAGCCTTATTACTCGCTTTAAATGGTTTTATAA
* * * *
22692438 TCTCATAATTGATTTTAAGTTGAATTTTTTGACATTTTCAGTTAAGAA-AGGTTATAATTGAATG
66 TCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTT-TGTTAA-AACAGATTATAATTGAATG
* * * ** *
22692502 TTTACCTCGTGAAACAAGAAG-AAAAAGCCATCC-ATCAACTAG
129 TTTACCTCGAGAAACATGAAGCTAAAA-CCATCCGATTGACAAG
* * * * * * *
22692544 AAAAGTCTATTTATAGTCATTCATACC-TTCGAATGCCTTACTACTTGCTTTAAATAGTTTTATA
1 AAAAGTCCATTTATAGTCACTCATGCCTTTAGAA-GCCTTATTACTCGCTTTAAATGGTTTTATA
* * *
22692608 ATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAAAAGATTCTAATTGAATG
65 ATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTT-GTTAAAACAGATTATAATTGAATG
* ** *
22692673 TTTACCTAG-GCAAAGGTGAAGC-AAAAGCCAT-CGATTTACAAG
129 TTTACCTCGAG-AAACATGAAGCTAAAA-CCATCCGATTGACAAG
* * * * *
22692715 AAACA-TCTATTTATAGCCATTCATGCC-TTCGAAAGCCTTATTACTCGCATTAAATGGTTTTAT
1 AAA-AGTCCATTTATAGTCACTCATGCCTTTAG-AAGCCTTATTACTCGCTTTAAATGGTTTTAT
**
22692778 AATCTCATTATTGATTTTAAGTTGAATTTTTTATTATTTTTTTGTTAAAACAGATTATAATTGAA
64 AATCTCATTATTGATTTTAAGTTGAA-TTTTT-TTACATTTTTGTTAAAACAGATTATAATTGAA
* * * *
22692843 TGTTTACCTCGAGAAACATGAGGCTAAAACCCT-CGGTTAAC-AG
127 TGTTTACCTCGAGAAACATGAAGCTAAAACCATCCGATTGACAAG
* * * *
22692886 AAAAGTCTATTTATAGTCACTTATGCCTTCAGAAGCCTTATTAGTCG-TTTAAAATGGTTTTATA
1 AAAAGTCCATTTATAGTCACTCATGCCTTTAGAAGCCTTATTACTCGCTTT-AAATGGTTTTATA
* * * * *
22692950 ATCTCATAATTGATTTTAAGTTGTATTTTTTAACATTTTCGGTTAAGAA-AGGTTATAATTGAAT
65 ATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTT-TGTTAA-AACAGATTATAATTGAAT
* * *
22693014 GTTTACCTTGAGAAACATGAAGCGAAAGCCAT-CGATTGACAAG
128 GTTTACCTCGAGAAACATGAAGCTAAAACCATCCGATTGACAAG
* * * *
22693057 AAAAGTTCATATATAGTCACTCATGCC-TTCGAAAGCCTTATTACTCACTTTAAATGGTTTTATA
1 AAAAGTCCATTTATAGTCACTCATGCCTTTAG-AAGCCTTATTACTCGCTTTAAATGGTTTTATA
* * * * * *
22693121 ATCCCATTATTGATTTTATGCTAAATTTTCTTACATTTTTTTGTTAAAACAGATTATAATTGAGT
65 ATCTCATTATTGATTTTAAGTTGAATTTTTTTACA--TTTTTGTTAAAACAGATTATAATTGAAT
* * * * *
22693186 GTTTGCCTTGGGAAACTTGAAG-TGAAATCCAT-CGATTGACAAG
128 GTTTACCTCGAGAAACATGAAGCT-AAAACCATCCGATTGACAAG
* * * * * *
22693229 AAAAATCCATTT-TCAATCAGTCATGCC-TTCGAAAGTCTTATTACTCGCTTTAAATAGTTTTAT
1 AAAAGTCCATTTAT-AGTCACTCATGCCTTTAG-AAGCCTTATTACTCGCTTTAAATGGTTTTAT
* *
22693292 AATCTCATTATTGATTTTCAGTTGAGTTTTTTTTA-ATTTTTTGTTAAAACAGATTATAATTGAA
64 AATCTCATTATTGATTTTAAGTTGA-ATTTTTTTACA-TTTTTGTTAAAACAGATTATAATTGAA
* * ** * *
22693356 TGTTTACCTCAAGAAATATGTGGCTAAAACCCTTCG-TT-AGCAAG
127 TGTTTACCTCGAGAAACATGAAGCTAAAACCATCCGATTGA-CAAG
* *
22693400 AAAAGTCAATTTATAGTCACTCATGCCTTTAGAAGCCTTATTACTCGCTTAAAATGGTTTTATAA
1 AAAAGTCCATTTATAGTCACTCATGCCTTTAGAAGCCTTATTACTCGCTTTAAATGGTTTTATAA
* *
22693465 TCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTAGTTAAGAA-AGGTTATAATTGAATG
66 TCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTT-GTTAA-AACAGATTATAATTGAATG
** * * ** *
22693529 TTTAAAT-AATGAAACTTGAAGC-AAAAGCCATCC-ATCAACTAG
129 TTTACCTCGA-GAAACATGAAGCTAAAA-CCATCCGATTGACAAG
* * *
22693571 AAAAGTCCATTTATAGTCATTCATGCC-TTCGAATGCCTTATTACTTGCTT
1 AAAAGTCCATTTATAGTCACTCATGCCTTTAGAA-GCCTTATTACTCGCTT
22693621 NNNNNNNNNN
Statistics
Matches: 2865, Mismatches: 479, Indels: 252
0.80 0.13 0.07
Matches are distributed among these distances:
168 2 0.00
169 80 0.03
170 396 0.14
171 1852 0.65
172 506 0.18
173 29 0.01
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (171 bp):
AAAAGTCCATTTATAGTCACTCATGCCTTTAGAAGCCTTATTACTCGCTTTAAATGGTTTTATAA
TCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGTTAAAACAGATTATAATTGAATGTT
TACCTCGAGAAACATGAAGCTAAAACCATCCGATTGACAAG
Found at i:22691043 original size:514 final size:512
Alignment explanation
Indices: 22689980--22693620 Score: 3945
Period size: 514 Copynumber: 7.1 Consensus size: 512
22689970 CATCAATAGT
*
22689980 AAAAGTTCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTAAAATGGTTTTATAA
1 AAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTAAAATGGTTTTATAA
* * * *
22690045 TCCCATAATTAATTTTAAGTTGAACTTTTTTACATTTTCAGTTAAGAAAGGTTATGATTGAATGT
66 TCCCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTAGTTAAGAAAGGTTATAATTGAATGT
* * * * *
22690110 TTCCCTC-ATGAAACGTGAAGCGAAAGCCATCCATTAACTAGAAAAGTCCATTTATAGTCATTCA
131 TTACCTCGA-GAAACGTGAAGCGAAAGCCATCGATTGACAAGAAAAGTCCATTTATAGTCACTCA
*
22690174 TGCC-TC-AAATGCCTTATTACTTGCTTTAAATGGTTTTATAATCTCA-TAGTTGATTTTAAGTT
195 TGCCTTCGAAA-GCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTA-TTGATTTTAAGTT
* * * * * * * * *
22690236 AAATTATCTTACATGTTTGGTTAAAACAGATAATGATT-AATGTTTGCCTAG-GCAAACGTGAAG
258 GAATT-TTTTACATTTTTTGTTAAAACAGATTATAATTGAATGTTTGCCTCGAG-AAACATGAGG
** * * * * *
22690299 -TGAATGCCATCGATTGACAAGAAAATTCCATTTATAGCCATTCATGCCTTCGAAAGCCCTATTA
321 CT-AAAACCCTCGATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTA
* * * *
22690363 CTCACTTTAATTGGTTTTATAATCTCATTATTTATTTTAAGTTGAATTATTTTTA-ATTTGTT-T
385 CTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATT-TTTTTACATTT-TTGG
* * * ** *
22690426 TTAAAACAGATTATAATTCAATGTTTAGCTCAAGAAATGTGAGGCTAAAA-CTC-TCCG-TTGAC
448 TTAAAACAGATTATAATTGAATGTTTACCTCGAGAAACATGAAGC-AAAAGC-CAT-CGATTGAC
*
22690488 AGG
510 AAG
* * * *
22690491 AAACA-TCCATGTATAGTCACTCATGCCTTTAGAAGCCTTATAACAT-GCTTAAAATGGTTTTAT
1 AAA-AGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTAC-TCGCTTAAAATGGTTTTAT
* * * * *
22690554 AATCTCATAATTAATTTTAAGATGAATTTTTTTCCATTTTCAGTTAAGAAAGGTTATAATTGAAT
64 AATCCCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTAGTTAAGAAAGGTTATAATTGAAT
* ** * * *
22690619 GTTTACCTCGAGAAACGAGAAATGAAAGCCATCCATTGACAAAAAAAGTCCATATATAGTCACTC
129 GTTTACCTCGAGAAACGTGAAGCGAAAGCCATCGATTGACAAGAAAAGTCCATTTATAGTCACTC
* * * * * **
22690684 ATCCCTTTCGAAAGCCTTATTACTCACTTTAAATGGTTTCATAATATGATTATTGATTTTAAACT
194 ATGCC-TTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTT
* * * * *
22690749 GAATTTTCTTACATTTTTGGTTACAACAAATTATAATTGAATGTTTGCCTTGAGAAACGTGAGGC
258 GAATTTT-TTACATTTTTTGTTAAAACAGATTATAATTGAATGTTTGCCTCGAGAAACATGAGGC
** * * *
22690814 TAAAACCCTCCTTTGGCAGGAAACGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACT
322 TAAAACCCTCGATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACT
* * * * *
22690879 GGTTTTAAATGGTTTTGTAATCGCATTATTGATTTTATA-TTGAATTTTCTTACATTTTTGGTTA
387 CGCTTTAAATGGTTTTATAATCTCATTATTGATTTTA-AGTTGAATTTTTTTACATTTTTGGTTA
* * * * *
22690943 AAACATATTCTAATTGAATTTTTGCCTCGAGAAACATGAAGCAAAAGCCATCGTTTGACAAG
451 AAACAGATTATAATTGAATGTTTACCTCGAGAAACATGAAGCAAAAGCCATCGATTGACAAG
* * * * *
22691005 AAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATAAGTCGCTCAAAATGGTTTTGTGA
1 AAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTAAAATGGTTTTATAA
* * * * *
22691070 TCTCATAATTGATTTTAAGTTGAATTTTATTACATTTTTGGTTAAGAAAGGCTATAAATGAATGT
66 TCCCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTAGTTAAGAAAGGTTATAATTGAATGT
* * * *
22691135 TTACCTCGAAAAACGTGAAGCAAAAGCCATCGATT-AGCAAGAAAAGTTCGTTTATAGTCACTCA
131 TTACCTCGAGAAACGTGAAGCGAAAGCCATCGATTGA-CAAGAAAAGTCCATTTATAGTCACTCA
* * * * *
22691199 TGCCTTCAAAAGTCTTATTACTCACTTTAAATGGTTTTATAATCCCATTATTGATTTTATGTTGA
195 TGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGA
* * * * * *
22691264 ATTTTCTTACATTTTTTGTTAAAACAGATAATAATTGAATGTGTGCCT-TAGGAAACTTGAAGCG
260 ATTTT-TTACATTTTTTGTTAAAACAGATTATAATTGAATGTTTGCCTCGA-GAAACATGAGGCT
* * * * * *
22691328 AAATCCATCGATTGACAAGAAAAATCCATTTACAGTCAGTCATGCCTTTGAAAGCCTTATTACTC
323 AAAACCCTCGATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTC
* * *
22691393 GCTTTAAATGGTTTTAGAAACTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTTGTTAAA
388 GCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAA
* * *
22691458 ACAGATTATAATTGAATGTTTACCTCGGGAAACATGAGGCTAAAA-CCCTCCG-TT-A-ATAG
453 ACAGATTATAATTGAATGTTTACCTCGAGAAACATGAAGC-AAAAGCCAT-CGATTGACA-AG
*
22691517 TAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTAAAATGGTTTTCTA
1 -AAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTAAAATGGTTTTATA
* *
22691582 ATCCCATAATTGATTTTAAGTTGAATTGTTTTACA-TTTTCGATTAAGAAAGGTTATAATTGAAT
65 ATCCCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTAG-TTAAGAAAGGTTATAATTGAAT
* * *
22691646 GTTTACCTCGAGAAACATGAAGCGAAAGCCATCCATTGACGAGAAAAGTCCATTTATAGTCACTC
129 GTTTACCTCGAGAAACGTGAAGCGAAAGCCATCGATTGACAAGAAAAGTCCATTTATAGTCACTC
* * * * **
22691711 TTGCCTTCGAAAGCCTTATTACTTGCTTTAAATGGTTTTATAATATGATTATCAATTTTAAAG-T
194 ATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTT-AAGTT
* * * * * * * *
22691775 GACTTTTTTGACA-TTTTGGTTACAACA-ATTTAGAATTGAATGTTTGCCTCGGGAAACTTAAAG
258 GAATTTTTT-ACATTTTTTGTTAAAACAGA-TTATAATTGAATGTTTGCCTCGAGAAACATGAGG
** * * * *
22691838 -TGAATGCCATCGATTGTCAAGAAAAGTCCATTTATAGTCACTCATGTCTTCAAAAGCCTTATTA
321 CT-AAAACCCTCGATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTA
* * * * * * *
22691902 CTCGTTTTAAATGGTTTTGTAATCTCATTATTGAATTTAAGTTAAATTTTCTTAAATATTTGGTT
385 CTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTT
* * * *
22691967 AAAACGGATTATAATTGAATGTTTGCCTTGAGAAACTTGAAGCAAAAGCCATCGATTGACAAG
450 AAAACAGATTATAATTGAATGTTTACCTCGAGAAACATGAAGCAAAAGCCATCGATTGACAAG
* * * * * *
22692030 AAAAATCCATTTATAGTCATTCATGACTTCGAAAGCCTTATTACTCTCTTTAAATGGTTTTATAA
1 AAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTAAAATGGTTTTATAA
* * * * * * * *
22692095 TCCCATTATTAATATTATGTTGAATTTTCTTACATTTTTTGTTAA-AACAGATTCTAATTGAATG
66 TCCCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTAGTTAAGAA-AGGTTATAATTGAATG
* * * * * *
22692159 TTTTCCTTGAGAAACATGAAGCGAAAGCCATCGAATGACAAGAAAAGTCCATTTATTGTCGCTCA
130 TTTACCTCGAGAAACGTGAAGCGAAAGCCATCGATTGACAAGAAAAGTCCATTTATAGTCACTCA
*
22692224 TGCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTTAA-TTG
195 TGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGA-TTTTAAGTTG
* * * *
22692288 AAATTTTTTATATTTTTTTATTAAAACAAATTATAATTGAATGTTTACCTC-AGGAAACAT-ATG
259 -AATTTTTTACA-TTTTTTGTTAAAACAGATTATAATTGAATGTTTGCCTCGA-GAAACATGA-G
* * * * *
22692351 GCTAAAACCCTCCG-TTAATAGGAAAAGTCAATTTATAGTCACTCATGCCTTCAAAAGCCTTATT
320 GCTAAAACCCT-CGATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATT
* * * * **
22692415 ACTCGCTTAAAATAGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTGACATTTTCAGT
384 ACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGGT
* * * * * ** *
22692480 TAAGAA-AGGTTATAATTGAATGTTTACCTCGTGAAACAAGAAGAAAAAGCCATCCATCAACTAG
449 TAA-AACAGATTATAATTGAATGTTTACCTCGAGAAACATGAAGCAAAAGCCATCGATTGACAAG
* * * * * * * * *
22692544 AAAAGTCTATTTATAGTCATTCATACCTTCGAATGCCTTACTACTTGCTTTAAATAGTTTTATAA
1 AAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTAAAATGGTTTTATAA
* * * * *
22692609 TCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAAAAGATTCTAATTGAATGT
66 TCCCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTAGTTAAGAAAGGTTATAATTGAATGT
* * * * * * *
22692674 TTACCTAG-GCAAAGGTGAAGCAAAAGCCATCGATTTACAAGAAACA-TCTATTTATAGCCATTC
131 TTACCTCGAG-AAACGTGAAGCGAAAGCCATCGATTGACAAGAAA-AGTCCATTTATAGTCACTC
*
22692737 ATGCCTTCGAAAGCCTTATTACTCGCATTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTG
194 ATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTG
* *
22692802 AATTTTTTATTATTTTTTTGTTAAAACAGATTATAATTGAATGTTTACCTCGAGAAACATGAGGC
259 AATTTTTTA-CA-TTTTTTGTTAAAACAGATTATAATTGAATGTTTGCCTCGAGAAACATGAGGC
* * * * *
22692867 TAAAACCCTCGGTTAAC-AGAAAAGTCTATTTATAGTCACTTATGCCTTC-AGAAGCCTTATTAG
322 TAAAACCCTCGATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGA-AAGCCTTATTAC
* * * *
22692930 TCG-TTTAAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGTATTTTTTAACATTTTCGGTT
386 TCGCTTT-AAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTT
* * *
22692994 AAGAA-AGGTTATAATTGAATGTTTACCTTGAGAAACATGAAGCGAAAGCCATCGATTGACAAG
450 AA-AACAGATTATAATTGAATGTTTACCTCGAGAAACATGAAGCAAAAGCCATCGATTGACAAG
* * * * *
22693057 AAAAGTTCATATATAGTCACTCATGCCTTCGAAAGCCTTATTACTCACTTTAAATGGTTTTATAA
1 AAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTAAAATGGTTTTATAA
* * * * * * * *
22693122 TCCCATTATTGATTTTATGCTAAATTTTCTTACATTTTTTTGTTAA-AACAGATTATAATTGAGT
66 TCCCATAATTGATTTTAAGTTGAATTTTTTTACA-TTTTTAGTTAAGAA-AGGTTATAATTGAAT
* * * * * * * * *
22693186 GTTTGCCTTGGGAAACTTGAAGTGAAATCCATCGATTGACAAGAAAAATCCATTT-TCAATCAGT
129 GTTTACCTCGAGAAACGTGAAGCGAAAGCCATCGATTGACAAGAAAAGTCCATTTAT-AGTCACT
* * *
22693250 CATGCCTTCGAAAGTCTTATTACTCGCTTTAAATAGTTTTATAATCTCATTATTGATTTTCAGTT
193 CATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTT
* * * * *
22693315 GAGTTTTTTTTA-ATTTTTTGTTAAAACAGATTATAATTGAATGTTTACCTCAAGAAATATGTGG
258 GA--ATTTTTTACATTTTTTGTTAAAACAGATTATAATTGAATGTTTGCCTCGAGAAACATGAGG
* *
22693379 CTAAAACCCTTCG-TT-AGCAAGAAAAGTCAATTTATAGTCACTCATGCCTT-TAGAAGCCTTAT
321 CTAAAACCC-TCGATTGA-CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGA-AAGCCTTAT
* * *
22693441 TACTCGCTTAAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTAG
383 TACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGG
* ** * * * ** *
22693506 TTAAGAA-AGGTTATAATTGAATGTTTAAAT-AATGAAACTTGAAGCAAAAGCCATCCATCAACT
448 TTAA-AACAGATTATAATTGAATGTTTACCTCGA-GAAACATGAAGCAAAAGCCATCGATTGACA
22693569 AG
511 AG
* * * *
22693571 AAAAGTCCATTTATAGTCATTCATGCCTTCGAATGCCTTATTACTTGCTT
1 AAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTT
22693621 NNNNNNNNNN
Statistics
Matches: 2667, Mismatches: 390, Indels: 143
0.83 0.12 0.04
Matches are distributed among these distances:
511 182 0.07
512 424 0.16
513 905 0.34
514 1132 0.42
515 17 0.01
516 7 0.00
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (512 bp):
AAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCGCTTAAAATGGTTTTATAA
TCCCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTAGTTAAGAAAGGTTATAATTGAATGT
TTACCTCGAGAAACGTGAAGCGAAAGCCATCGATTGACAAGAAAAGTCCATTTATAGTCACTCAT
GCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAA
TTTTTTACATTTTTTGTTAAAACAGATTATAATTGAATGTTTGCCTCGAGAAACATGAGGCTAAA
ACCCTCGATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCT
TTAAATGGTTTTATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACA
GATTATAATTGAATGTTTACCTCGAGAAACATGAAGCAAAAGCCATCGATTGACAAG
Found at i:22697570 original size:170 final size:170
Alignment explanation
Indices: 22697196--22697677 Score: 578
Period size: 170 Copynumber: 2.8 Consensus size: 170
22697186 TGGGGTATTT
* * *
22697196 CAAGAAAAGTCCATTTATAGTCACCCATACCTTCGAAAGCCTTATTACTT-GCTTTAAATGGTTT
1 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTA-TTCACTTTAAATGGTTT
* * * * * * *
22697260 TAAAATCTCATTATTGATTTTTAGTTGAGTTTTCTTACATTATT-AGTTGAAATAAATTATAATT
65 TATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATT-TTGA-TTAAAACATATTATAATT
* * ** *
22697324 GAATGTTTACCTCAAGAAATGTGATGCGAACACTGTCGATTGA
128 GAATGTTTACCTCAAGAAAAGTGAAGCGAACACCATCCATTGA
* * * *
22697367 CTAGAAAAGTCCATTTATTGTCACTCATGCCTTCGAAAGTCTTATTATTCACTTCAAATGGTTTT
1 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTATTCACTTTAAATGGTTTT
* * ** * * *
22697432 ATAATCTGACTATTGATTTTAAGCCGAATTTTTTTATATTTTGATTTAAACATAGTATAATTGAA
66 ATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTGATTAAAACATATTATAATTGAA
22697497 TGTTTACCTCGAA-AAAAGTGAAGCGAA-AGCCATCCATTGA
131 TGTTTACCTC-AAGAAAAGTGAAGCGAACA-CCATCCATTGA
* * * * *
22697537 CAAGAATAGTTCATTTATAGTCGCTCATGCCTTCGAAAGCCTTATTACTCACTTTAAATGGTTTA
1 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTATTCACTTTAAATGGTTTT
22697602 ATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTCTTTG-TTAAAACATATTATAATTG
66 ATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACA-T-TTTGATTAAAACATATTATAATTG
*
22697666 AATATTTACCTC
129 AATGTTTACCTC
22697678 TGGAAACATG
Statistics
Matches: 263, Mismatches: 42, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
169 1 0.00
170 140 0.53
171 118 0.45
172 4 0.02
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.40
Consensus pattern (170 bp):
CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTATTCACTTTAAATGGTTTT
ATAATCTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTGATTAAAACATATTATAATTGAA
TGTTTACCTCAAGAAAAGTGAAGCGAACACCATCCATTGA
Found at i:22698228 original size:102 final size:102
Alignment explanation
Indices: 22698052--22698256 Score: 410
Period size: 102 Copynumber: 2.0 Consensus size: 102
22698042 AGATTGCTTA
22698052 ATGGATAAGTATTACACATGGACCAATGGAAACATGCCATGTGTCAAGCTTGGATTATTCTAGAA
1 ATGGATAAGTATTACACATGGACCAATGGAAACATGCCATGTGTCAAGCTTGGATTATTCTAGAA
22698117 TTTCCTTGTAAAATCTATTTAAAACTCTCTTAGTCTC
66 TTTCCTTGTAAAATCTATTTAAAACTCTCTTAGTCTC
22698154 ATGGATAAGTATTACACATGGACCAATGGAAACATGCCATGTGTCAAGCTTGGATTATTCTAGAA
1 ATGGATAAGTATTACACATGGACCAATGGAAACATGCCATGTGTCAAGCTTGGATTATTCTAGAA
22698219 TTTCCTTGTAAAATCTATTTAAAACTCTCTTAGTCTC
66 TTTCCTTGTAAAATCTATTTAAAACTCTCTTAGTCTC
22698256 A
1 A
22698257 CCCATATGGC
Statistics
Matches: 103, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
102 103 1.00
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.34
Consensus pattern (102 bp):
ATGGATAAGTATTACACATGGACCAATGGAAACATGCCATGTGTCAAGCTTGGATTATTCTAGAA
TTTCCTTGTAAAATCTATTTAAAACTCTCTTAGTCTC
Found at i:22699282 original size:42 final size:42
Alignment explanation
Indices: 22699230--22699432 Score: 264
Period size: 42 Copynumber: 4.8 Consensus size: 42
22699220 TGTTGATGTG
* *
22699230 GACCGAGCTATATGCGAGTAGGAGTGCACATAAGCCGTTGCT
1 GACCCAGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCT
* *
22699272 AACCCAGCTATGTGCGAGTAGGAGTGCACATAAGTCGTTGCT
1 GACCCAGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCT
* *
22699314 GATCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCT
1 GACCCAGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCT
* * *
22699356 GACCC-GATTATGTGTGAGTGGGAGTGCACATAAGCCGTTGCT
1 GACCCAG-CTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCT
* * * * *
22699398 GACCCAGTTATATGCGAGTGGGAGTACGCATAAGC
1 GACCCAGCTATGTGCGAGTAGGAGTGCACATAAGC
22699433 TATTGCATAT
Statistics
Matches: 143, Mismatches: 16, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
41 1 0.01
42 141 0.99
43 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.32, T:0.23
Consensus pattern (42 bp):
GACCCAGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCT
Found at i:22707295 original size:36 final size:36
Alignment explanation
Indices: 22707255--22707385 Score: 120
Period size: 36 Copynumber: 3.4 Consensus size: 36
22707245 GGAGTCTTTG
**
22707255 TGTGCACCCCCACATCACGCACAACTAATGCCATCA
1 TGTGCACCCCCACATTGCGCACAACTAATGCCATCA
* *
22707291 TGTGCTCCCCCCACATTGCGCACATGGCATATAT-CATCATCA
1 TGTGC-ACCCCCACATTGCGCACA--AC-TA-ATGC--CATCA
22707333 TCGTGTGCACCCCCACATTGCGCACAACTAATGCCATCA
1 ---TGTGCACCCCCACATTGCGCACAACTAATGCCATCA
*
22707372 TGTGCTCCCCCACA
1 TGTGCACCCCCACA
22707386 CATCGCGCAC
Statistics
Matches: 77, Mismatches: 7, Indels: 22
0.73 0.07 0.21
Matches are distributed among these distances:
36 18 0.23
37 15 0.19
39 6 0.08
40 5 0.06
41 5 0.06
42 6 0.08
44 17 0.22
45 5 0.06
ACGTcount: A:0.25, C:0.40, G:0.14, T:0.21
Consensus pattern (36 bp):
TGTGCACCCCCACATTGCGCACAACTAATGCCATCA
Found at i:22709104 original size:14 final size:15
Alignment explanation
Indices: 22709085--22709134 Score: 52
Period size: 14 Copynumber: 3.5 Consensus size: 15
22709075 TAATAAATAA
22709085 AATATTAATATT-TT
1 AATATTAATATTATT
*
22709099 AATATT-ATTTTATT
1 AATATTAATATTATT
*
22709113 AATA-AAATATTATT
1 AATATTAATATTATT
*
22709127 TATATTAA
1 AATATTAA
22709135 AATTTTTCAC
Statistics
Matches: 28, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
13 4 0.14
14 22 0.79
15 2 0.07
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
AATATTAATATTATT
Found at i:22713365 original size:19 final size:19
Alignment explanation
Indices: 22713341--22713378 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
22713331 CTGCCAAACC
*
22713341 CTCAAATTATACTCCAATA
1 CTCAAATCATACTCCAATA
22713360 CTCAAATCATACTCCAATA
1 CTCAAATCATACTCCAATA
22713379 AGTCAAATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.29, G:0.00, T:0.29
Consensus pattern (19 bp):
CTCAAATCATACTCCAATA
Found at i:22717181 original size:20 final size:20
Alignment explanation
Indices: 22717156--22717203 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
22717146 TATAAAGATC
*
22717156 TCATTTTTCCAACAGCTTCT
1 TCATTTTTCCAACAACTTCT
* *
22717176 TCATTTCTCCAGCAACTTCT
1 TCATTTTTCCAACAACTTCT
22717196 TC-TTTTTC
1 TCATTTTTC
22717204 GTCCCATCTC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 5 0.21
20 19 0.79
ACGTcount: A:0.17, C:0.31, G:0.04, T:0.48
Consensus pattern (20 bp):
TCATTTTTCCAACAACTTCT
Found at i:22718508 original size:39 final size:41
Alignment explanation
Indices: 22718413--22718517 Score: 128
Period size: 40 Copynumber: 2.6 Consensus size: 41
22718403 GTGCCCTGCT
22718413 TCTCGCTGCAGTGAGAAACATTCTGTTTTTACTGCCCGCAA
1 TCTCGCTGCAGTGAGAAACATTCTGTTTTTACTGCCCGCAA
* * *
22718454 -CTCGCTGTAGTGAGAAACATTTTGTTTTGT-CT-CCTG-AA
1 TCTCGCTGCAGTGAGAAACATTCTGTTTT-TACTGCCCGCAA
* *
22718492 TCTCGCTACAGTGAGAAACTTTCTGT
1 TCTCGCTGCAGTGAGAAACATTCTGT
22718518 CTTGCATGCT
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
38 2 0.04
39 24 0.44
40 28 0.51
41 1 0.02
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (41 bp):
TCTCGCTGCAGTGAGAAACATTCTGTTTTTACTGCCCGCAA
Found at i:22732779 original size:60 final size:60
Alignment explanation
Indices: 22732684--22732846 Score: 195
Period size: 60 Copynumber: 2.7 Consensus size: 60
22732674 TAGGAGACAA
* * * * *
22732684 AAACAGAAAGTTT-TTCTCTGTAGCGAGATTTAATCTTGCTGCAGCAAAATTGTAACCCAG
1 AAACAGAAAGTTTCTT-ACTGTAGCGAAATTCAATCTCGCTGCAGCAAAATTGCAACCCAG
* * *
22732744 AAACAGAATGTTTCTTGCTGTAGCGAAATTCAATCTCGCTGCAGCGAAATTGCAACCCAG
1 AAACAGAAAGTTTCTTACTGTAGCGAAATTCAATCTCGCTGCAGCAAAATTGCAACCCAG
* * *
22732804 AAACAGAAAGTTTCTCACTGTAGCGACAA-TGAATTTCGCTGCA
1 AAACAGAAAGTTTCTTACTGTAGCGA-AATTCAATCTCGCTGCA
22732847 TCGAGAAGCT
Statistics
Matches: 89, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
60 85 0.96
61 4 0.04
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (60 bp):
AAACAGAAAGTTTCTTACTGTAGCGAAATTCAATCTCGCTGCAGCAAAATTGCAACCCAG
Found at i:22742386 original size:30 final size:30
Alignment explanation
Indices: 22742337--22742478 Score: 173
Period size: 30 Copynumber: 4.8 Consensus size: 30
22742327 AACCTTTGCC
* *
22742337 TTTTAAA-GATCAAACATAACCACATTACT
1 TTTTAAAGGATCAAGCATAACCTCATTACT
* *
22742366 TTTTAAAGGATCAAGTATAACTTC-TCTACT
1 TTTTAAAGGATCAAGCATAACCTCAT-TACT
*
22742396 TTTTAAAGGATCAAGCATAACCTCACTACT
1 TTTTAAAGGATCAAGCATAACCTCATTACT
*
22742426 TTTTAAAGGATCAAGCGTAACCTCATTAC-
1 TTTTAAAGGATCAAGCATAACCTCATTACT
* * *
22742455 TTTTAAAGGCTTAAGTATAACCTC
1 TTTTAAAGGATCAAGCATAACCTC
22742479 TCTTCCTTTC
Statistics
Matches: 97, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
29 28 0.29
30 69 0.71
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.34
Consensus pattern (30 bp):
TTTTAAAGGATCAAGCATAACCTCATTACT
Found at i:22743083 original size:72 final size:75
Alignment explanation
Indices: 22743007--22743143 Score: 172
Period size: 75 Copynumber: 1.9 Consensus size: 75
22742997 GACTGACTTG
* * * *
22743007 AAGTCTGAAGC-TTTCTGT-TTTT-TGAGAATCGACATCTTCTTCACTAGGTGTCGATTCTTCTT
1 AAGTCTGAACCTTTTCTGTCTTTTCTCAAAATCAACATCTTCTTCACTAGGTGTCGATTCTTCTT
22743069 GTAGTCCTTT
66 GTAGTCCTTT
* * * **
22743079 AAGTCTGCACCTTTTTTGTCTTTTCTCAAAATCAACATGTTCTTTTCTAGGTGTCGATTCTTCTT
1 AAGTCTGAACCTTTTCTGTCTTTTCTCAAAATCAACATCTTCTTCACTAGGTGTCGATTCTTCTT
22743144 CAATATTTGG
Statistics
Matches: 53, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
72 9 0.17
73 6 0.11
74 4 0.08
75 34 0.64
ACGTcount: A:0.18, C:0.20, G:0.15, T:0.46
Consensus pattern (75 bp):
AAGTCTGAACCTTTTCTGTCTTTTCTCAAAATCAACATCTTCTTCACTAGGTGTCGATTCTTCTT
GTAGTCCTTT
Found at i:22744969 original size:62 final size:63
Alignment explanation
Indices: 22744852--22745086 Score: 296
Period size: 63 Copynumber: 3.7 Consensus size: 63
22744842 CATCACTACC
** ** ** *
22744852 GGCATGTGCACTGCCCACTCTACACATAAACGGTTGTAATTATCACGACATTGTCATTCAACT
1 GGCATGTGCACTGCCCACTCCGCACATGCACGGTTACAATTATCACAACATTGTCATTCAACT
* * *
22744915 GGCATGTGCACTGTCCA-TGCCGCACATGCACGATTA-AATTATCACAACATTGTCATTCAACC
1 GGCATGTGCACTGCCCACT-CCGCACATGCACGGTTACAATTATCACAACATTGTCATTCAACT
* *
22744977 GGCATGTGCACTACCCACTCCGCACATGCACGGTTACAATTATCACAACATTGTCATTCGA-T
1 GGCATGTGCACTGCCCACTCCGCACATGCACGGTTACAATTATCACAACATTGTCATTCAACT
* * *
22745039 CGACATGTGCACTGCCCACTCTGCACATGCATGGTTACAATTATCACA
1 -GGCATGTGCACTGCCCACTCCGCACATGCACGGTTACAATTATCACA
22745087 CAATGGTACC
Statistics
Matches: 150, Mismatches: 18, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
62 56 0.37
63 94 0.63
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.26
Consensus pattern (63 bp):
GGCATGTGCACTGCCCACTCCGCACATGCACGGTTACAATTATCACAACATTGTCATTCAACT
Found at i:22745117 original size:2 final size:2
Alignment explanation
Indices: 22745110--22745175 Score: 132
Period size: 2 Copynumber: 33.0 Consensus size: 2
22745100 TATGACATAG
22745110 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
22745152 TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA
22745176 NATCTTAATA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 64 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:22755343 original size:127 final size:126
Alignment explanation
Indices: 22755175--22755409 Score: 344
Period size: 127 Copynumber: 1.9 Consensus size: 126
22755165 TCATTATTGG
* ** * *
22755175 CATGTGCACTGCCCACTCCGCACATGCACAGTTGTAATTATCACGACATTATCATTCAATCAGCA
1 CATGTGCACTACCCACTCCGCACATGCACAGTTACAATTATCACAACATTATCATTCAACCAGCA
* *
22755240 TGTGCACTGCCCACTCTGCACATGCCCGGTTACAAATTATCACAACATTGTCATTCAACCGA
66 TGTGCACTGCCCACTCCGCACATGCACGGTTAC-AATTATCACAACATTGTCATTCAACCGA
** * * *
22755302 CATGTGCACTACCCACTCCGCACATGCATGGTTACAATTATCACAACATTGTTATTCAACCGGCA
1 CATGTGCACTACCCACTCCGCACATGCACAGTTACAATTATCACAACATTATCATTCAACCAGCA
*
22755367 TGTGCATTGCCCACTCCGCACATGCACGGTTACAATTATCACA
66 TGTGCACTGCCCACTCCGCACATGCACGGTTACAATTATCACA
22755410 CAATGGTGCC
Statistics
Matches: 95, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
126 10 0.11
127 85 0.89
ACGTcount: A:0.28, C:0.31, G:0.14, T:0.26
Consensus pattern (126 bp):
CATGTGCACTACCCACTCCGCACATGCACAGTTACAATTATCACAACATTATCATTCAACCAGCA
TGTGCACTGCCCACTCCGCACATGCACGGTTACAATTATCACAACATTGTCATTCAACCGA
Found at i:22755371 original size:63 final size:63
Alignment explanation
Indices: 22755173--22755409 Score: 339
Period size: 63 Copynumber: 3.7 Consensus size: 63
22755163 CATCATTATT
* ** * * *
22755173 GGCATGTGCACTGCCCACTCCGCACATGCACAGTTGTAATTATCACGACATTATCATTCAATC
1 GGCATGTGCACTGCCCACTCCGCACATGCACGGTTACAATTATCACAACATTGTCATTCAACC
* * *
22755236 AGCATGTGCACTGCCCACTCTGCACATGCCCGGTTACAAATTATCACAACATTGTCATTCAACC
1 GGCATGTGCACTGCCCACTCCGCACATGCACGGTTAC-AATTATCACAACATTGTCATTCAACC
* * * *
22755300 GACATGTGCACTACCCACTCCGCACATGCATGGTTACAATTATCACAACATTGTTATTCAACC
1 GGCATGTGCACTGCCCACTCCGCACATGCACGGTTACAATTATCACAACATTGTCATTCAACC
*
22755363 GGCATGTGCATTGCCCACTCCGCACATGCACGGTTACAATTATCACA
1 GGCATGTGCACTGCCCACTCCGCACATGCACGGTTACAATTATCACA
22755410 CAATGGTGCC
Statistics
Matches: 153, Mismatches: 20, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
63 99 0.65
64 54 0.35
ACGTcount: A:0.28, C:0.31, G:0.15, T:0.26
Consensus pattern (63 bp):
GGCATGTGCACTGCCCACTCCGCACATGCACGGTTACAATTATCACAACATTGTCATTCAACC
Found at i:22775925 original size:13 final size:13
Alignment explanation
Indices: 22775907--22775931 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22775897 ATTTTCAAAA
22775907 ATTTTATAAAATT
1 ATTTTATAAAATT
22775920 ATTTTATAAAAT
1 ATTTTATAAAAT
22775932 CTCATTTTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATTTTATAAAATT
Found at i:22794076 original size:27 final size:27
Alignment explanation
Indices: 22794025--22794076 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
22794015 ATGTCTTGGT
*
22794025 GGTGGAAAATTACAATTTTGCCCCTGG
1 GGTGGAAAATTACAATTTTGACCCTGG
*
22794052 GGTGGCAAAATTACCATTTT-ACCCT
1 GGTGG-AAAATTACAATTTTGACCCT
22794077 TTTACTCTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 9 0.41
28 13 0.59
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (27 bp):
GGTGGAAAATTACAATTTTGACCCTGG
Found at i:22794147 original size:20 final size:20
Alignment explanation
Indices: 22794130--22794167 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
22794120 CCTCAAATCT
22794130 TACTCCAATAAGTCAAATTA
1 TACTCCAATAAGTCAAATTA
22794150 TACTCCAATAAGTCAAAT
1 TACTCCAATAAGTCAAAT
22794168 GGGGCCAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.45, C:0.21, G:0.05, T:0.29
Consensus pattern (20 bp):
TACTCCAATAAGTCAAATTA
Found at i:22803777 original size:282 final size:285
Alignment explanation
Indices: 22803270--22803806 Score: 873
Period size: 282 Copynumber: 1.9 Consensus size: 285
22803260 TAATTGATTT
* *
22803270 AACTAATATTAGTATACATCAAGTATTATTATTTTTGTATACCTTATATGGTTACATATTTATAA
1 AACTAATATTAGTATACATCAAGTATTATTATTTTTGTATAACTTATATAGTTACATATTTATAA
* * * * *
22803335 ATAGTACTCATGATTTAAATTATTAAAATTATAATATTAAGCTAATTGTAAAAGATGACATTATT
66 ATAGTACTCATGATTTAAATTATTAAAATTATAATATGAAACTAATCGTAAAAGATGACATCATG
* * *
22803400 TATTTAAAGTAATATTAGAATTATTTGATATGAATATAATCAATGTGAAACATAATGTTAAATTA
131 TACTCAAAGTAATATTAGAATTATTTGATATGAATATAATCAATGTAAAACATAATGTTAAATTA
* *
22803465 CTTTGTTGTATATATATTAATGACACAAATTATATGTTATAATGTTATATATATTACAAAGTTTA
196 CTTTATTGTATATATATTAATGACACAAATTATATGTTATAATGCTATATATATTACAAAGTTTA
22803530 CTATCAATTCATTTTAATTTATATC
261 CTATCAATTCATTTTAATTTATATC
*
22803555 AACTAATATTAGTATACATCAAGTATTATTATTTTTGTATAACTTATATAGTTATATATTTAT-A
1 AACTAATATTAGTATACATCAAGTATTATTATTTTTGTATAACTTATATAGTTACATATTTATAA
* **
22803619 A-A-TACTCATGATTTCAATTATTAAAATTATAATATGAAACTAATCGTAGGAGATGACATCATG
66 ATAGTACTCATGATTTAAATTATTAAAATTATAATATGAAACTAATCGTAAAAGATGACATCATG
* * * *
22803682 TACTCAAAGTAATATTTGAATTATTTTATATGAATATAATCAATGTAAAACATAATGTTATATTG
131 TACTCAAAGTAATATTAGAATTATTTGATATGAATATAATCAATGTAAAACATAATGTTAAATTA
22803747 CTTTATTGTATATATATTAATGACACAAATTATATGTTATAATGCTATATATATTACAAA
196 CTTTATTGTATATATATTAATGACACAAATTATATGTTATAATGCTATATATATTACAAA
22803807 ATTTGTATAA
Statistics
Matches: 232, Mismatches: 20, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
282 169 0.73
283 1 0.00
284 2 0.01
285 60 0.26
ACGTcount: A:0.41, C:0.07, G:0.09, T:0.43
Consensus pattern (285 bp):
AACTAATATTAGTATACATCAAGTATTATTATTTTTGTATAACTTATATAGTTACATATTTATAA
ATAGTACTCATGATTTAAATTATTAAAATTATAATATGAAACTAATCGTAAAAGATGACATCATG
TACTCAAAGTAATATTAGAATTATTTGATATGAATATAATCAATGTAAAACATAATGTTAAATTA
CTTTATTGTATATATATTAATGACACAAATTATATGTTATAATGCTATATATATTACAAAGTTTA
CTATCAATTCATTTTAATTTATATC
Found at i:22810799 original size:13 final size:13
Alignment explanation
Indices: 22810781--22810805 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22810771 TTCCAGAAAA
22810781 TTTATAAAATCAT
1 TTTATAAAATCAT
22810794 TTTATAAAATCA
1 TTTATAAAATCA
22810806 CAATTTCTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTATAAAATCAT
Found at i:22814047 original size:12 final size:12
Alignment explanation
Indices: 22814030--22814054 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
22814020 TATCTGAATA
22814030 TAATAAAATATT
1 TAATAAAATATT
22814042 TAATAAAATATT
1 TAATAAAATATT
22814054 T
1 T
22814055 TATTTTCTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
TAATAAAATATT
Found at i:22815921 original size:20 final size:20
Alignment explanation
Indices: 22815895--22815940 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
22815885 AATCTTACTT
* *
22815895 TTTTTCACTTGTTTCCTTGAA
1 TTTTACACTT-TTCCCTTGAA
22815916 TTTTCACACTTTTCCCTTGAA
1 TTTT-ACACTTTTCCCTTGAA
22815937 TTTT
1 TTTT
22815941 TNNNNNNNNN
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.15, C:0.22, G:0.07, T:0.57
Consensus pattern (20 bp):
TTTTACACTTTTCCCTTGAA
Found at i:22815941 original size:22 final size:22
Alignment explanation
Indices: 22815900--22815940 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
22815890 TACTTTTTTT
*
22815900 CACTTGTTTCCTTGAATTTTCA
1 CACTTGTTCCCTTGAATTTTCA
22815922 CACTT-TTCCCTTGAATTTT
1 CACTTGTTCCCTTGAATTTT
22815941 TNNNNNNNNN
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.17, C:0.24, G:0.07, T:0.51
Consensus pattern (22 bp):
CACTTGTTCCCTTGAATTTTCA
Found at i:22825317 original size:38 final size:39
Alignment explanation
Indices: 22825275--22825377 Score: 120
Period size: 38 Copynumber: 2.6 Consensus size: 39
22825265 ATAGTGCCCG
* *
22825275 TGTGCACGATGTGGGGAGATGTACACGAT-AGCACTGAT-
1 TGTGCACGATGTGGGGGGATGTACACGATGAGC-CGGATA
* * * *
22825313 TGTGCATGATGTGGGGGGATGCACACGATGGTGCCGGCTA
1 TGTGCACGATGTGGGGGGATGTACACGAT-GAGCCGGATA
22825353 TGTGCACGATGTGGGGGGATGTACA
1 TGTGCACGATGTGGGGGGATGTACA
22825378 TGAGCCGGGT
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
38 26 0.48
39 3 0.06
40 25 0.46
ACGTcount: A:0.21, C:0.16, G:0.40, T:0.23
Consensus pattern (39 bp):
TGTGCACGATGTGGGGGGATGTACACGATGAGCCGGATA
Found at i:22829343 original size:22 final size:22
Alignment explanation
Indices: 22829318--22829361 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
22829308 TTTAAAACAA
*
22829318 CTTTAAAACTAAAAGCTCTGAT
1 CTTTAAAACCAAAAGCTCTGAT
*
22829340 CTTTAAAACCAAAGGCTCTGAT
1 CTTTAAAACCAAAAGCTCTGAT
22829362 ACCAATGTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (22 bp):
CTTTAAAACCAAAAGCTCTGAT
Found at i:22831616 original size:20 final size:20
Alignment explanation
Indices: 22831590--22831635 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
22831580 AATCTTACCT
* *
22831590 TTTTTCACTTGTTTCCTTGAA
1 TTTTACACTT-TTCCCTTGAA
22831611 TTTTCACACTTTTCCCTTGAA
1 TTTT-ACACTTTTCCCTTGAA
22831632 TTTT
1 TTTT
22831636 TTCACCTAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.15, C:0.22, G:0.07, T:0.57
Consensus pattern (20 bp):
TTTTACACTTTTCCCTTGAA
Found at i:22831636 original size:22 final size:22
Alignment explanation
Indices: 22831595--22831635 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
22831585 TACCTTTTTT
*
22831595 CACTTGTTTCCTTGAATTTTCA
1 CACTTGTTCCCTTGAATTTTCA
22831617 CACTT-TTCCCTTGAATTTT
1 CACTTGTTCCCTTGAATTTT
22831636 TTCACCTAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.17, C:0.24, G:0.07, T:0.51
Consensus pattern (22 bp):
CACTTGTTCCCTTGAATTTTCA
Found at i:22835404 original size:20 final size:20
Alignment explanation
Indices: 22835379--22835420 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
22835369 ATGAGAAGAA
* *
22835379 GAAGAAGCTGTTGGAGAAAT
1 GAAGAAGCTATTGGAAAAAT
22835399 GAAGAAGCTATTGGAAAAAT
1 GAAGAAGCTATTGGAAAAAT
22835419 GA
1 GA
22835421 TATTTATAGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.05, G:0.31, T:0.19
Consensus pattern (20 bp):
GAAGAAGCTATTGGAAAAAT
Found at i:22844525 original size:108 final size:107
Alignment explanation
Indices: 22844388--22844589 Score: 260
Period size: 108 Copynumber: 1.9 Consensus size: 107
22844378 TTTAATTGAA
* * *
22844388 TCATTGGGCCTAATTAATTAAATTGTTTAATTAAGTCATTGGGCCTAATTAATTAAATTAAACAA
1 TCATTAGGCCTAATTAATTAAATTGTTTAATTAAATCATTGGGCCTAACTAATTAAATTAAACAA
* *
22844453 TTAAGTTATTGGGGCTAATTGATTGAATTTGTTTAAAGTAAG
66 TTAAGTTATTGGGCCTAATTGATTAAATTTGTTTAAAGTAAG
* * ** * *****
22844495 TCATTAGGCCTACTTGATTAAAATTGTTTAATTAAATTGTTGGGCTTAACTAATTAAATTGTTTT
1 TCATTAGGCCTAATTAATT-AAATTGTTTAATTAAATCATTGGGCCTAACTAATTAAATTAAACA
22844560 ATTAAGTTATTGGGCCTAATTGATTAAATT
65 ATTAAGTTATTGGGCCTAATTGATTAAATT
22844590 AAATAATTAA
Statistics
Matches: 79, Mismatches: 15, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
107 16 0.20
108 63 0.80
ACGTcount: A:0.34, C:0.08, G:0.16, T:0.43
Consensus pattern (107 bp):
TCATTAGGCCTAATTAATTAAATTGTTTAATTAAATCATTGGGCCTAACTAATTAAATTAAACAA
TTAAGTTATTGGGCCTAATTGATTAAATTTGTTTAAAGTAAG
Found at i:22844599 original size:35 final size:35
Alignment explanation
Indices: 22844340--22844609 Score: 242
Period size: 35 Copynumber: 7.7 Consensus size: 35
22844330 CACTTGATTA
* *
22844340 AAATTGTTTAATTAAG---TTGTGCCTAATTAACT
1 AAATTGTTTAATTAAGTTATTGGGCCTAATTAATT
*
22844372 AAATTGTTTAATTGAA-TCATTGGGCCTAATTAATT
1 AAATTGTTTAATT-AAGTTATTGGGCCTAATTAATT
*
22844407 AAATTGTTTAATTAAGTCATTGGGCCTAATTAATT
1 AAATTGTTTAATTAAGTTATTGGGCCTAATTAATT
**** * *
22844442 AAATTAAACAATTAAGTTATTGGGGCTAATTGATT
1 AAATTGTTTAATTAAGTTATTGGGCCTAATTAATT
* * * * * *
22844477 GAATTTGTTTAAAGTAAGTCATTAGGCCTACTTGATT
1 -AAATTGTTT-AATTAAGTTATTGGGCCTAATTAATT
* * * *
22844514 AAAATTGTTTAATTAAATTGTTGGGCTTAACTAATT
1 -AAATTGTTTAATTAAGTTATTGGGCCTAATTAATT
* *
22844550 AAATTGTTTTATTAAGTTATTGGGCCTAATTGATT
1 AAATTGTTTAATTAAGTTATTGGGCCTAATTAATT
***
22844585 AAATTAAATAATTAAGTTAATTGGG
1 AAATTGTTTAATTAAGTT-ATTGGG
22844610 TTTCTTAAGG
Statistics
Matches: 190, Mismatches: 40, Indels: 12
0.79 0.17 0.05
Matches are distributed among these distances:
32 13 0.07
33 2 0.01
34 2 0.01
35 117 0.62
36 27 0.14
37 29 0.15
ACGTcount: A:0.35, C:0.07, G:0.16, T:0.42
Consensus pattern (35 bp):
AAATTGTTTAATTAAGTTATTGGGCCTAATTAATT
Found at i:22846056 original size:178 final size:181
Alignment explanation
Indices: 22845691--22846057 Score: 483
Period size: 178 Copynumber: 2.0 Consensus size: 181
22845681 GATTGAATAG
* * *
22845691 GCTGATTTTAAGCAAGAAATTGGAGCAAAAAGTGAAAGCAGTCCAGCTCACTGTTATGACGTGAA
1 GCTGATTTCAAGAAAGAAATTGGAGCAAAAAGTGAAAGCAGTCCAGCTCACTGTTATGACATGAA
* * *
22845756 TTTCTGTTTTAATTAACAAGAAAGTCTTGGAAATTAATTCTGAAAAATTTCAGGAAAATTATCTT
66 TTTCAGTTTTAATTAACAAGAAACTCTTGGAAATTAATTCTGAAAAATTTCAGGAAAATTAACTT
* * *
22845821 TATTAAACTGTTCAATAAGGATTATTTCTCGAAAATATCATGGTCAAACAT
131 TATTAAAATGTTCAATAAGGATTATTTCTCGAAAATATCATGGACAAACAA
* * * * * * *
22845872 GCTGATTTCAAGAAAGAAAATTGGTGCAAATA-T-AAATCTGTCCAGCTCATTGTTTTGGCATGA
1 GCTGATTTCAAGAAAG-AAATTGGAGCAAAAAGTGAAAGCAGTCCAGCTCACTGTTATGACATGA
* *
22845935 ATTTCAGTTTTAATTGACAGGAAACTCTT-GAAATTAATTCTGAAAAA-TTCTA-GAAAATTAAC
65 ATTTCAGTTTTAATTAACAAGAAACTCTTGGAAATTAATTCTGAAAAATTTC-AGGAAAATTAAC
* * * *
22845997 TTTATTAAAATGTTCAATGAGGATTATTTCTGGAAATTTTCATGGACAAACAA
129 TTTATTAAAATGTTCAATAAGGATTATTTCTCGAAAATATCATGGACAAACAA
22846050 GCTGATTT
1 GCTGATTT
22846058 AGGATATTTA
Statistics
Matches: 162, Mismatches: 22, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
178 66 0.41
179 19 0.12
180 49 0.30
181 15 0.09
182 13 0.08
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.34
Consensus pattern (181 bp):
GCTGATTTCAAGAAAGAAATTGGAGCAAAAAGTGAAAGCAGTCCAGCTCACTGTTATGACATGAA
TTTCAGTTTTAATTAACAAGAAACTCTTGGAAATTAATTCTGAAAAATTTCAGGAAAATTAACTT
TATTAAAATGTTCAATAAGGATTATTTCTCGAAAATATCATGGACAAACAA
Found at i:22849928 original size:34 final size:35
Alignment explanation
Indices: 22849806--22849931 Score: 164
Period size: 35 Copynumber: 3.6 Consensus size: 35
22849796 GGGAGGAAAG
22849806 GAGCAACTTAGCTACTGATTTTTGGAGGGAGAATA
1 GAGCAACTTAGCTACTGATTTTTGGAGGGAGAATA
*
22849841 GAGCAGCTTAGCTACTGATTTTTGGAGGGAGAATA
1 GAGCAACTTAGCTACTGATTTTTGGAGGGAGAATA
* ** * * *
22849876 GAGCAGCTTAGCTGTTGATTTTT-TAGGAAAAATA
1 GAGCAACTTAGCTACTGATTTTTGGAGGGAGAATA
* *
22849910 GAGCAACTTGGCTATTGATTTT
1 GAGCAACTTAGCTACTGATTTT
22849932 GATGTTGATA
Statistics
Matches: 82, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
34 27 0.33
35 55 0.67
ACGTcount: A:0.29, C:0.11, G:0.27, T:0.33
Consensus pattern (35 bp):
GAGCAACTTAGCTACTGATTTTTGGAGGGAGAATA
Found at i:22850124 original size:5 final size:5
Alignment explanation
Indices: 22850098--22850149 Score: 59
Period size: 5 Copynumber: 9.8 Consensus size: 5
22850088 GGGAGAGAGG
* *
22850098 AGAAA GAGAAA GAGAGAA AGAAA AGAAA AGAAA AGAAA GGAAA AGGAA
1 AGAAA -AGAAA -AGA-AA AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA
22850146 AGAA
1 AGAA
22850150 TATATATATA
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
5 27 0.66
6 12 0.29
7 2 0.05
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:22868287 original size:24 final size:25
Alignment explanation
Indices: 22868247--22868293 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
22868237 TTTGTACAGA
22868247 AAAATTGGACAGCTTTG-TGCTGCC
1 AAAATTGGACAGCTTTGTTGCTGCC
*
22868271 AAAATTGAGA-AGTTTTGTTGCTG
1 AAAATTG-GACAGCTTTGTTGCTG
22868294 GAAATTTGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.34
Consensus pattern (25 bp):
AAAATTGGACAGCTTTGTTGCTGCC
Found at i:22873895 original size:19 final size:19
Alignment explanation
Indices: 22873871--22873908 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
22873861 CTGCCAAACC
*
22873871 CTCAAATTATACTCCAATA
1 CTCAAATCATACTCCAATA
22873890 CTCAAATCATACTCCAATA
1 CTCAAATCATACTCCAATA
22873909 AGTCAAATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.29, G:0.00, T:0.29
Consensus pattern (19 bp):
CTCAAATCATACTCCAATA
Found at i:22884550 original size:67 final size:67
Alignment explanation
Indices: 22884456--22884591 Score: 191
Period size: 67 Copynumber: 2.0 Consensus size: 67
22884446 GAAAAGTTAG
* * *
22884456 TTTTAGGTTTTGGTTGATCTCGGGAAAAACCATTCTTAAAGGTTATGGCTGAGCCTGTTAAAAGC
1 TTTTAGGTTTTGGTTGATCCCGGGAAAAACCATTCTTAAAGGTTATGGCTAAGCCTGTGAAAAGC
22884521 CA
66 CA
* * * * * *
22884523 TTTTTGGTTTTGGTTGTTCCCGTGAAAAACCATTGTTAAAGGTTGTGGCTAAGCTTGTGAAAAGC
1 TTTTAGGTTTTGGTTGATCCCGGGAAAAACCATTCTTAAAGGTTATGGCTAAGCCTGTGAAAAGC
22884588 CA
66 CA
22884590 TT
1 TT
22884592 GTAAAAGCTT
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
67 60 1.00
ACGTcount: A:0.25, C:0.14, G:0.24, T:0.37
Consensus pattern (67 bp):
TTTTAGGTTTTGGTTGATCCCGGGAAAAACCATTCTTAAAGGTTATGGCTAAGCCTGTGAAAAGC
CA
Found at i:22887435 original size:63 final size:63
Alignment explanation
Indices: 22887280--22887440 Score: 191
Period size: 63 Copynumber: 2.6 Consensus size: 63
22887270 TAATTGATGT
* ** ** **
22887280 AACCATGCATGTGCGGAGTGGGTAGTGCACATGCCGGTTGAATGACAATGTTGTGATAATTGT
1 AACCGTGCATGTGCAAAGTGGGTAGTGCACATGCCGGTTGAATGACAATGTCATGATAATTAC
* * * *
22887343 AACTGTGCATGTG-AGGAA-TGGGCAATGCACATGTCGGTTGAATGACAATGTCATGATAATTAC
1 AACCGTGCATGTGCA--AAGTGGGTAGTGCACATGCCGGTTGAATGACAATGTCATGATAATTAC
22887406 AACCGTGCATGTGCAAAGTGGGTAGTGCACATGCC
1 AACCGTGCATGTGCAAAGTGGGTAGTGCACATGCC
22887441 AGTAATGATG
Statistics
Matches: 79, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
62 2 0.03
63 75 0.95
64 2 0.03
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.26
Consensus pattern (63 bp):
AACCGTGCATGTGCAAAGTGGGTAGTGCACATGCCGGTTGAATGACAATGTCATGATAATTAC
Found at i:22894710 original size:129 final size:128
Alignment explanation
Indices: 22894473--22894728 Score: 444
Period size: 129 Copynumber: 2.0 Consensus size: 128
22894463 TTAGAGGAAG
22894473 AGATTATAGTGCATACTCCTCTAGGCGAACGGTTAGTAAGAAATACGTATTATAGAGACTATGGT
1 AGATTATAGTGCATACTCCTCTAGGCGAACGGTTAGTAAGAAATACGTATTATAGAGACTATGGT
22894538 ATTAAAGTTGGGGAAAAAAATTTATGGGTGATTTAATCCCTTTGGAGATTCGGGACTTTGATNA
66 ATTAAAGTTGGGGAAAAAAATTTATGGGTGATTTAATCCCTTTGGAGATTCGGGACTTTGAT-A
* *
22894602 AGATTATAGTGCATACTCCTCTGGGC-AAGTGGTTAGTAAG-AATACGTATTATAGAGACTATGG
1 AGATTATAGTGCATACTCCTCTAGGCGAA-CGGTTAGTAAGAAATACGTATTATAGAGACTATGG
*
22894665 TATTAAAGTTGGGGAAAAAAATTTATGGGTGATTTTAATCCCTTTGGAGATTCTGGACTTTGAT
65 TATTAAAGTTGGGGAAAAAAATTTATGGGTGA-TTTAATCCCTTTGGAGATTCGGGACTTTGAT
22894729 TTGATCTTGG
Statistics
Matches: 122, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
128 57 0.47
129 65 0.53
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (128 bp):
AGATTATAGTGCATACTCCTCTAGGCGAACGGTTAGTAAGAAATACGTATTATAGAGACTATGGT
ATTAAAGTTGGGGAAAAAAATTTATGGGTGATTTAATCCCTTTGGAGATTCGGGACTTTGATA
Found at i:22903984 original size:20 final size:20
Alignment explanation
Indices: 22903959--22904004 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
22903949 TTTTGACCCC
22903959 ATTTGACTTATTGGAGTATA
1 ATTTGACTTATTGGAGTATA
*
22903979 ATTTGACTTATTGGAGTATG
1 ATTTGACTTATTGGAGTATA
22903999 ATTTGA
1 ATTTGA
22904005 GGTTTAGAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.28, C:0.04, G:0.22, T:0.46
Consensus pattern (20 bp):
ATTTGACTTATTGGAGTATA
Found at i:22912598 original size:42 final size:42
Alignment explanation
Indices: 22912539--22912661 Score: 210
Period size: 42 Copynumber: 2.9 Consensus size: 42
22912529 GTTGATTTGA
22912539 ACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCTG
1 ACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCTG
* *
22912581 ACCCGACTATGTGCGAGTAGGAGTGCATATAAGCCGTTGCTG
1 ACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCTG
* *
22912623 ACCCGGCTATGTGTGAGTGGGAGTGCACATAAGCCGTTG
1 ACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTG
22912662 TTGCCCCCAT
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.33, T:0.23
Consensus pattern (42 bp):
ACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCTG
Found at i:22912957 original size:26 final size:26
Alignment explanation
Indices: 22912896--22912957 Score: 97
Period size: 26 Copynumber: 2.4 Consensus size: 26
22912886 TTGCATATGA
*
22912896 GATGATGATAATGGGATGATGTGCAT
1 GATGATGATGATGGGATGATGTGCAT
*
22912922 GATGATGATGATGGGATGGTGTGCAT
1 GATGATGATGATGGGATGATGTGCAT
*
22912948 GTTGATGATG
1 GATGATGATG
22912958 GGTATATGGT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.26, C:0.03, G:0.39, T:0.32
Consensus pattern (26 bp):
GATGATGATGATGGGATGATGTGCAT
Found at i:22931379 original size:12 final size:12
Alignment explanation
Indices: 22931362--22931386 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
22931352 ATTTTCCACA
22931362 ATATATATATAG
1 ATATATATATAG
22931374 ATATATATATAG
1 ATATATATATAG
22931386 A
1 A
22931387 GAGAGAGAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (12 bp):
ATATATATATAG
Found at i:22940322 original size:54 final size:54
Alignment explanation
Indices: 22940252--22940458 Score: 342
Period size: 54 Copynumber: 3.8 Consensus size: 54
22940242 ATACTGTCCA
*
22940252 GCTATGTGCACAATGTGGTGGGATACACATGAGCTGGGTGAGATGGGATGTCTG
1 GCTATGTGCACGATGTGGTGGGATACACATGAGCTGGGTGAGATGGGATGTCTG
* * *
22940306 GCTATGTGCATGATGTGGTGTGATGCACATGAGCTGGGTGAGATGGGATGTCTG
1 GCTATGTGCACGATGTGGTGGGATACACATGAGCTGGGTGAGATGGGATGTCTG
* * *
22940360 GCTATGTGCACGATGTGGTGGGATGCTCATGAGCTGGGTGAGATGGGATGTCCG
1 GCTATGTGCACGATGTGGTGGGATACACATGAGCTGGGTGAGATGGGATGTCTG
*
22940414 GCTATGTGCACGATGTGGTGGGATACACATGAGCCGGGTGAGATG
1 GCTATGTGCACGATGTGGTGGGATACACATGAGCTGGGTGAGATG
22940459 CATATGATGA
Statistics
Matches: 142, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 142 1.00
ACGTcount: A:0.20, C:0.14, G:0.41, T:0.26
Consensus pattern (54 bp):
GCTATGTGCACGATGTGGTGGGATACACATGAGCTGGGTGAGATGGGATGTCTG
Found at i:22942403 original size:30 final size:29
Alignment explanation
Indices: 22942367--22942458 Score: 72
Period size: 30 Copynumber: 3.2 Consensus size: 29
22942357 TAGTATACCA
22942367 CCACATCTCATCCAGCTCATGTGCATCCCC
1 CCACATCTCA-CCAGCTCATGTGCATCCCC
* *
22942397 CCACATCGTGCA-CA--T-A-GTTGGA-CACC
1 CCACATC-T-CACCAGCTCATG-TGCATCCCC
22942423 CC-CATCTCACCCAGCTCATGTGCATCCCC
1 CCACATCTCA-CCAGCTCATGTGCATCCCC
22942452 CCACATC
1 CCACATC
22942459 ATGCACATAG
Statistics
Matches: 47, Mismatches: 4, Indels: 22
0.64 0.05 0.30
Matches are distributed among these distances:
23 2 0.04
24 1 0.02
25 6 0.13
26 6 0.13
27 5 0.11
28 5 0.11
29 6 0.13
30 13 0.28
31 1 0.02
32 2 0.04
ACGTcount: A:0.22, C:0.46, G:0.12, T:0.21
Consensus pattern (29 bp):
CCACATCTCACCAGCTCATGTGCATCCCC
Found at i:22942454 original size:55 final size:54
Alignment explanation
Indices: 22942365--22942571 Score: 288
Period size: 54 Copynumber: 3.8 Consensus size: 54
22942355 ATTAGTATAC
* * **
22942365 CACCACATCTCATCCAGCTCATGTGCATCCCCCCACATCGTGCACATAGTTGGA
1 CACCCCATCTCACCCAGCTCATGTGCATCCCCCCACATCGTGCACATAGCCGGA
* *
22942419 CACCCCCATCTCACCCAGCTCATGTGCATCCCCCCACATCATGCACATAGCCAGA
1 CA-CCCCATCTCACCCAGCTCATGTGCATCCCCCCACATCGTGCACATAGCCGGA
* * * *
22942474 CACCCTATCTTAACCAGCTCATGTGCATCTCCCCACATCGTGCACATAGCCGGA
1 CACCCCATCTCACCCAGCTCATGTGCATCCCCCCACATCGTGCACATAGCCGGA
* * *
22942528 CACCCTATCTCACTCAGCTCATGTGCATCCCCCCACATTGTGCA
1 CACCCCATCTCACCCAGCTCATGTGCATCCCCCCACATCGTGCA
22942572 TAGTTAATGC
Statistics
Matches: 135, Mismatches: 17, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
54 87 0.64
55 48 0.36
ACGTcount: A:0.24, C:0.42, G:0.13, T:0.21
Consensus pattern (54 bp):
CACCCCATCTCACCCAGCTCATGTGCATCCCCCCACATCGTGCACATAGCCGGA
Found at i:22942730 original size:2 final size:2
Alignment explanation
Indices: 22942723--22942764 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
22942713 TATGACATAG
22942723 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
22942765 CTANNNNNNN
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:22942792 original size:2 final size:2
Alignment explanation
Indices: 22942785--22942817 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
22942775 NATGACATAG
22942785 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
22942818 CAACACTATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:22945736 original size:60 final size:60
Alignment explanation
Indices: 22945643--22945761 Score: 166
Period size: 60 Copynumber: 2.0 Consensus size: 60
22945633 TTTGATTGTC
* *
22945643 AAGGGGGACTTGAAGCCTCGATTCACATTAGGTGGCGTGGGCAGTTCCCACAAGTAGGTA
1 AAGGGGGACTTGAAGCCCCAATTCACATTAGGTGGCGTGGGCAGTTCCCACAAGTAGGTA
*** * **
22945703 AAGGGGGACTTGAAGCCCCAATTTGTATTAGGTGGTGTGGGCAGTTCCCATGAGTAGGT
1 AAGGGGGACTTGAAGCCCCAATTCACATTAGGTGGCGTGGGCAGTTCCCACAAGTAGGT
22945762 GATGATGTTT
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
60 51 1.00
ACGTcount: A:0.24, C:0.18, G:0.34, T:0.24
Consensus pattern (60 bp):
AAGGGGGACTTGAAGCCCCAATTCACATTAGGTGGCGTGGGCAGTTCCCACAAGTAGGTA
Found at i:22951737 original size:35 final size:32
Alignment explanation
Indices: 22951689--22951790 Score: 118
Period size: 32 Copynumber: 3.1 Consensus size: 32
22951679 GATCAACTAA
*
22951689 AACCCAAAGTGGTTTTTCAAAGGCTCAACCGC
1 AACCCAAAGTGGTTTTTCAAAGGCTCAACCAC
* *
22951721 AACCTTTCACAA-TGGTTTTTC-ATGAGCTCAACCAA
1 AACC---CA-AAGTGGTTTTTCAAAG-GCTCAACCAC
22951756 AACCCAAAGTGGTTTTTCAAAGGCTCAACCAC
1 AACCCAAAGTGGTTTTTCAAAGGCTCAACCAC
22951788 AAC
1 AAC
22951791 TTACAATAAT
Statistics
Matches: 58, Mismatches: 5, Indels: 14
0.75 0.06 0.18
Matches are distributed among these distances:
31 2 0.03
32 27 0.47
33 2 0.03
34 2 0.03
35 23 0.40
36 2 0.03
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (32 bp):
AACCCAAAGTGGTTTTTCAAAGGCTCAACCAC
Found at i:22951752 original size:67 final size:67
Alignment explanation
Indices: 22951654--22951829 Score: 205
Period size: 67 Copynumber: 2.6 Consensus size: 67
22951644 GCTTAGTCAA
* *
22951654 AACCTTTCACAATAGTTTTTACCGGGATCAACTAAAACCCAAAGTGGTTTTTCAAAGGCTCAACC
1 AACCTTTCACAATAGTTTTTACCGAGATCAACCAAAACCCAAAGTGGTTTTTCAAAGGCTCAACC
*
22951719 GC
66 AC
* * *
22951721 AACCTTTCACAATGGTTTTT-CATGAGCTCAACCAAAACCCAAAGTGGTTTTTCAAAGGCTCAAC
1 AACCTTTCACAATAGTTTTTAC-CGAGATCAACCAAAACCCAAAGTGGTTTTTCAAAGGCTCAAC
22951785 CAC
65 CAC
* * * * *
22951788 AA-CTTACAATAATGGCTTTT-CACGAGATTAACCAAAACCCAA
1 AACCTTTC-ACAATAGTTTTTAC-CGAGATCAACCAAAACCCAA
22951830 CACTTAACTT
Statistics
Matches: 95, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
66 5 0.05
67 90 0.95
ACGTcount: A:0.35, C:0.26, G:0.13, T:0.26
Consensus pattern (67 bp):
AACCTTTCACAATAGTTTTTACCGAGATCAACCAAAACCCAAAGTGGTTTTTCAAAGGCTCAACC
AC
Found at i:22952805 original size:17 final size:17
Alignment explanation
Indices: 22952783--22952816 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
22952773 AAATGGGGAT
22952783 TGCTCCCCCTAAGTGTG
1 TGCTCCCCCTAAGTGTG
*
22952800 TGCTCCCCCTTAGTGTG
1 TGCTCCCCCTAAGTGTG
22952817 CATATTTTGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.09, C:0.35, G:0.24, T:0.32
Consensus pattern (17 bp):
TGCTCCCCCTAAGTGTG
Found at i:22956939 original size:27 final size:27
Alignment explanation
Indices: 22956867--22956941 Score: 114
Period size: 27 Copynumber: 2.8 Consensus size: 27
22956857 TGGGTGGTGT
* * * *
22956867 AAAATTACAATTTTGCCCCTGGGTGGC
1 AAAATGACTATTTTGCCCTTAGGTGGC
22956894 AAAATGACTATTTTGCCCTTAGGTGGC
1 AAAATGACTATTTTGCCCTTAGGTGGC
22956921 AAAATGACTATTTTGCCCTTA
1 AAAATGACTATTTTGCCCTTA
22956942 TCCTCGAAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (27 bp):
AAAATGACTATTTTGCCCTTAGGTGGC
Found at i:22956951 original size:27 final size:27
Alignment explanation
Indices: 22956892--22956952 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
22956882 CCCCTGGGTG
** *
22956892 GCAAAATGACTATTTTGCCCTTAGGTG
1 GCAAAATGACTATTTTGCCCTTACCTC
22956919 GCAAAATGACTATTTTGCCCTTATCCTC
1 GCAAAATGACTATTTTGCCCTTA-CCTC
*
22956947 GAAAAA
1 GCAAAA
22956953 ATGCCAAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 23 0.79
28 6 0.21
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.31
Consensus pattern (27 bp):
GCAAAATGACTATTTTGCCCTTACCTC
Found at i:22964114 original size:27 final size:27
Alignment explanation
Indices: 22964084--22964149 Score: 123
Period size: 27 Copynumber: 2.4 Consensus size: 27
22964074 TCTCCTCAAC
22964084 TTCTTTCTTGTTGAGCCATGCCCATTT
1 TTCTTTCTTGTTGAGCCATGCCCATTT
*
22964111 TTCTTTCTTGTTGGGCCATGCCCATTT
1 TTCTTTCTTGTTGAGCCATGCCCATTT
22964138 TTCTTTCTTGTT
1 TTCTTTCTTGTT
22964150 CTTTTCTTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.08, C:0.24, G:0.15, T:0.53
Consensus pattern (27 bp):
TTCTTTCTTGTTGAGCCATGCCCATTT
Found at i:22964146 original size:4 final size:4
Alignment explanation
Indices: 22964137--22964192 Score: 58
Period size: 4 Copynumber: 12.5 Consensus size: 4
22964127 CATGCCCATT
22964137 TTTC TTTC TTGTTC TTTTC TTTTC TTTTC TTTTC TTTC TTTC TTTC TTTC
1 TTTC TTTC -T-TTC -TTTC -TTTC -TTTC -TTTC TTTC TTTC TTTC TTTC
22964187 TTTC TT
1 TTTC TT
22964193 CCACCGTCTA
Statistics
Matches: 50, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
4 26 0.52
5 19 0.38
6 5 0.10
ACGTcount: A:0.00, C:0.21, G:0.02, T:0.77
Consensus pattern (4 bp):
TTTC
Found at i:22964156 original size:15 final size:14
Alignment explanation
Indices: 22964136--22964189 Score: 76
Period size: 15 Copynumber: 3.9 Consensus size: 14
22964126 CCATGCCCAT
22964136 TTTTCTTTCTTGTTC
1 TTTTCTTTCTT-TTC
22964151 TTTTCTTTTCTTTTC
1 TTTTC-TTTCTTTTC
22964166 TTTTCTTTC-TTTC
1 TTTTCTTTCTTTTC
22964179 -TTTCTTTCTTT
1 TTTTCTTTCTTT
22964190 CTTCCACCGT
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
12 8 0.22
13 6 0.16
14 4 0.11
15 13 0.35
16 6 0.16
ACGTcount: A:0.00, C:0.20, G:0.02, T:0.78
Consensus pattern (14 bp):
TTTTCTTTCTTTTC
Found at i:22964158 original size:5 final size:5
Alignment explanation
Indices: 22964136--22964189 Score: 64
Period size: 5 Copynumber: 11.6 Consensus size: 5
22964126 CCATGCCCAT
22964136 TTTTC -TTTC TTGTTC TTTTC TTTTC TTTTC TTTTC -TTTC -TTTC -TTTC
1 TTTTC TTTTC TT-TTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC
22964183 -TTTC TTT
1 TTTTC TTT
22964190 CTTCCACCGT
Statistics
Matches: 46, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
4 20 0.43
5 21 0.46
6 5 0.11
ACGTcount: A:0.00, C:0.20, G:0.02, T:0.78
Consensus pattern (5 bp):
TTTTC
Found at i:22964180 original size:8 final size:9
Alignment explanation
Indices: 22964136--22964192 Score: 73
Period size: 8 Copynumber: 6.2 Consensus size: 9
22964126 CCATGCCCAT
22964136 TTTTCTTTC
1 TTTTCTTTC
22964145 TTGTTCTTTTC
1 TT-TTC-TTTC
22964156 TTTTCTTTTC
1 TTTTC-TTTC
22964166 TTTTCTTTC
1 TTTTCTTTC
22964175 -TTTCTTTC
1 TTTTCTTTC
22964183 -TTTCTTTC
1 TTTTCTTTC
22964191 TT
1 TT
22964193 CCACCGTCTA
Statistics
Matches: 45, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
8 16 0.36
9 7 0.16
10 16 0.36
11 6 0.13
ACGTcount: A:0.00, C:0.21, G:0.02, T:0.77
Consensus pattern (9 bp):
TTTTCTTTC
Found at i:22964401 original size:34 final size:35
Alignment explanation
Indices: 22964348--22964428 Score: 119
Period size: 34 Copynumber: 2.3 Consensus size: 35
22964338 CATTGGCTTC
* *
22964348 AAAATCAGTAGCTACGCTGCTCTATTTCTCCT-CA
1 AAAATCAGCAGCTAAGCTGCTCTATTTCTCCTCCA
* *
22964382 AAAACCAGCAGCTAAGCTGCTCTATTTTTCCTCCA
1 AAAATCAGCAGCTAAGCTGCTCTATTTCTCCTCCA
22964417 AAAATCAGCAGC
1 AAAATCAGCAGC
22964429 CAAAACAACA
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
34 28 0.68
35 13 0.32
ACGTcount: A:0.31, C:0.30, G:0.12, T:0.27
Consensus pattern (35 bp):
AAAATCAGCAGCTAAGCTGCTCTATTTCTCCTCCA
Found at i:22968860 original size:20 final size:20
Alignment explanation
Indices: 22968834--22968879 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
22968824 AATCTTACCT
* *
22968834 TTTTTCACTTGTTTCCTTGAA
1 TTTTACACTT-TTCCCTTGAA
22968855 TTTTCACACTTTTCCCTTGAA
1 TTTT-ACACTTTTCCCTTGAA
22968876 TTTT
1 TTTT
22968880 TCCACCTAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.15, C:0.22, G:0.07, T:0.57
Consensus pattern (20 bp):
TTTTACACTTTTCCCTTGAA
Found at i:22968881 original size:22 final size:22
Alignment explanation
Indices: 22968839--22968879 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
22968829 TACCTTTTTT
*
22968839 CACTTGTTTCCTTGAATTTTCA
1 CACTTGTTCCCTTGAATTTTCA
22968861 CACTT-TTCCCTTGAATTTT
1 CACTTGTTCCCTTGAATTTT
22968880 TCCACCTAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.17, C:0.24, G:0.07, T:0.51
Consensus pattern (22 bp):
CACTTGTTCCCTTGAATTTTCA
Found at i:22970385 original size:2 final size:2
Alignment explanation
Indices: 22970380--22970412 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
22970370 TCTATGTATG
22970380 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
22970413 CCATCATCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:22970484 original size:43 final size:42
Alignment explanation
Indices: 22970436--22970565 Score: 109
Period size: 42 Copynumber: 3.1 Consensus size: 42
22970426 CACCCTCCCA
* * * *
22970436 TCATCATTAGCTCATATGCACTCCCCATTAGCACATGGCTGGG
1 TCATCATCAGCTCATACGCACT-CCCACTAGCACATAGCTGGG
* * * *
22970479 TCATCATCGGCTTATGCGCACTCCCACTCGCACATAGCTGGG
1 TCATCATCAGCTCATACGCACTCCCACTAGCACATAGCTGGG
* * * * * *
22970521 TCATCATCTA-CTTATGCACACTCCTACTCGCACATAGCCGGG
1 TCATCATC-AGCTCATACGCACTCCCACTAGCACATAGCTGGG
22970563 TCA
1 TCA
22970566 ATATCATTAC
Statistics
Matches: 74, Mismatches: 12, Indels: 3
0.83 0.13 0.03
Matches are distributed among these distances:
42 57 0.77
43 17 0.23
ACGTcount: A:0.22, C:0.34, G:0.18, T:0.26
Consensus pattern (42 bp):
TCATCATCAGCTCATACGCACTCCCACTAGCACATAGCTGGG
Found at i:22970523 original size:42 final size:42
Alignment explanation
Indices: 22970466--22970565 Score: 146
Period size: 42 Copynumber: 2.4 Consensus size: 42
22970456 CTCCCCATTA
* * *
22970466 GCACATGGCTGGGTCATCATCGGCTTATGCGCACTCCCACTC
1 GCACATAGCTGGGTCATCATCGACTTATGCACACTCCCACTC
* *
22970508 GCACATAGCTGGGTCATCATCTACTTATGCACACTCCTACTC
1 GCACATAGCTGGGTCATCATCGACTTATGCACACTCCCACTC
*
22970550 GCACATAGCCGGGTCA
1 GCACATAGCTGGGTCA
22970566 ATATCATTAC
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 52 1.00
ACGTcount: A:0.21, C:0.34, G:0.21, T:0.24
Consensus pattern (42 bp):
GCACATAGCTGGGTCATCATCGACTTATGCACACTCCCACTC
Found at i:22978693 original size:35 final size:32
Alignment explanation
Indices: 22978632--22978738 Score: 135
Period size: 32 Copynumber: 3.2 Consensus size: 32
22978622 TTTACTGGGA
*
22978632 TCAACTAAAACCCAAAGTGGTTTTTCAAAGGC
1 TCAACCAAAACCCAAAGTGGTTTTTCAAAGGC
* **
22978664 TCAACCACAACCCTTCACAA-TGGTTTTTCATGGGC
1 TCAACCA-AAACC--CA-AAGTGGTTTTTCAAAGGC
22978699 TCAACCAAAACCCAAAGTGGTTTTTCAAAGGC
1 TCAACCAAAACCCAAAGTGGTTTTTCAAAGGC
22978731 TCAACCAA
1 TCAACCAA
22978739 TTCAGCCATT
Statistics
Matches: 63, Mismatches: 7, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
31 2 0.03
32 29 0.46
33 4 0.06
34 4 0.06
35 22 0.35
36 2 0.03
ACGTcount: A:0.35, C:0.27, G:0.14, T:0.24
Consensus pattern (32 bp):
TCAACCAAAACCCAAAGTGGTTTTTCAAAGGC
Found at i:22978703 original size:67 final size:67
Alignment explanation
Indices: 22978610--22978737 Score: 213
Period size: 67 Copynumber: 1.9 Consensus size: 67
22978600 GCCAAAATCT
*
22978610 TTCACAATAGTTTTTACTGGGATCAACTAAAACCCAAAGTGGTTTTTCAAAGGCTCAACCACAAC
1 TTCACAATAGTTTTTACTGGGATCAACCAAAACCCAAAGTGGTTTTTCAAAGGCTCAACCACAAC
22978675 CC
66 CC
* *
22978677 TTCACAATGGTTTTT-CATGGGCTCAACCAAAACCCAAAGTGGTTTTTCAAAGGCTCAACCA
1 TTCACAATAGTTTTTAC-TGGGATCAACCAAAACCCAAAGTGGTTTTTCAAAGGCTCAACCA
22978738 ATTCAGCCAT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
66 1 0.02
67 56 0.98
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (67 bp):
TTCACAATAGTTTTTACTGGGATCAACCAAAACCCAAAGTGGTTTTTCAAAGGCTCAACCACAAC
CC
Found at i:22979781 original size:20 final size:19
Alignment explanation
Indices: 22979756--22979804 Score: 71
Period size: 21 Copynumber: 2.4 Consensus size: 19
22979746 TCTTACCTTT
22979756 TTTTCACTTGTTTCCTTGAA
1 TTTTCACTT-TTTCCTTGAA
22979776 TTTTCACACTTTTTCCTTGAA
1 TTTT--CACTTTTTCCTTGAA
22979797 TTTTCACT
1 TTTTCACT
22979805 CTAGGGTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
19 4 0.15
20 4 0.15
21 14 0.52
22 5 0.19
ACGTcount: A:0.16, C:0.22, G:0.06, T:0.55
Consensus pattern (19 bp):
TTTTCACTTTTTCCTTGAA
Found at i:22979785 original size:22 final size:21
Alignment explanation
Indices: 22979760--22979803 Score: 79
Period size: 21 Copynumber: 2.0 Consensus size: 21
22979750 ACCTTTTTTT
22979760 CACTTGTTTCCTTGAATTTTCA
1 CACTT-TTTCCTTGAATTTTCA
22979782 CACTTTTTCCTTGAATTTTCA
1 CACTTTTTCCTTGAATTTTCA
22979803 C
1 C
22979804 TCTAGGGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.18, C:0.25, G:0.07, T:0.50
Consensus pattern (21 bp):
CACTTTTTCCTTGAATTTTCA
Found at i:22983133 original size:49 final size:49
Alignment explanation
Indices: 22983080--22983256 Score: 210
Period size: 49 Copynumber: 3.6 Consensus size: 49
22983070 TGCATAATCA
* ** * * *
22983080 ACATCATAACATCATCCGGAATCATCCACGAACGAAACATACATACCTC
1 ACATCATATCATCATCCAAAATCATCTACGAATGAAATATACATACCTC
* * * *
22983129 ACATCATATCATCGTCTAGAATCATCTACGAATGGAATATACATACCTC
1 ACATCATATCATCATCCAAAATCATCTACGAATGAAATATACATACCTC
* * * * *
22983178 ACATCATATCGTCATCCAAAATCATCTATGGATGAAATGTACATATCTC
1 ACATCATATCATCATCCAAAATCATCTACGAATGAAATATACATACCTC
*
22983227 ACATCATATCATCATCCGAAATCATCTACG
1 ACATCATATCATCATCCAAAATCATCTACG
22983257 GACAGAACAT
Statistics
Matches: 108, Mismatches: 20, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
49 108 1.00
ACGTcount: A:0.38, C:0.27, G:0.09, T:0.26
Consensus pattern (49 bp):
ACATCATATCATCATCCAAAATCATCTACGAATGAAATATACATACCTC
Found at i:22987689 original size:35 final size:35
Alignment explanation
Indices: 22987662--22987915 Score: 235
Period size: 35 Copynumber: 7.3 Consensus size: 35
22987652 TTAATTGTTT
* *
22987662 AATTTAATCAATTAGGCTCAATAACTTAATTACAC
1 AATTTAATCAATTAGGCCCAATAACTTAATTAAAC
* * * *
22987697 AATTTAATTAATTAAGCCCAACAATTTAATTAAAC
1 AATTTAATCAATTAGGCCCAATAACTTAATTAAAC
* * *
22987732 AATTTTAATCGATTAGGCCCAATGATTTAATTAAAC
1 AA-TTTAATCAATTAGGCCCAATAACTTAATTAAAC
* ****
22987768 AAATTTAATCAATTAGGCCTAATAACTTAATTGTTT
1 -AATTTAATCAATTAGGCCCAATAACTTAATTAAAC
* * * *
22987804 AATTTAATTAATTAGTCCTAATGACTTAATTAAAC
1 AATTTAATCAATTAGGCCCAATAACTTAATTAAAC
* * * *
22987839 AATTTAATTAATTAGGCCTAATGATTTAATTAAAC
1 AATTTAATCAATTAGGCCCAATAACTTAATTAAAC
* * *
22987874 AATTTAATTAATTAGG--C-ACAACTTAATTAAAT
1 AATTTAATCAATTAGGCCCAATAACTTAATTAAAC
22987906 AATTTTAATC
1 AA-TTTAATC
22987916 GAGTGCTTGA
Statistics
Matches: 182, Mismatches: 34, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
32 13 0.07
33 6 0.03
35 108 0.59
36 53 0.29
37 2 0.01
ACGTcount: A:0.43, C:0.12, G:0.07, T:0.38
Consensus pattern (35 bp):
AATTTAATCAATTAGGCCCAATAACTTAATTAAAC
Found at i:22987780 original size:107 final size:105
Alignment explanation
Indices: 22987662--22987890 Score: 300
Period size: 107 Copynumber: 2.2 Consensus size: 105
22987652 TTAATTGTTT
*
22987662 AATTTAATCAATTAGG-CTCAATAACTTAATTACACAATTTAATTAATTAAG-CCCAACAATTTA
1 AATTTAATCAATTAGGCCT-AATAACTTAATTACACAATTTAATTAATT-AGTCCCAACAACTTA
*
22987725 ATTAAACAATTTTAATCGATTAGGCCCAATGATTTAATTAAAC
64 ATTAAACAA-TTTAATCAATTAGGCCCAATGATTTAATTAAAC
**** * **
22987768 AAATTTAATCAATTAGGCCTAATAACTTAATTGTTTAATTTAATTAATTAGTCCTAATGACTTAA
1 -AATTTAATCAATTAGGCCTAATAACTTAATTACACAATTTAATTAATTAGTCCCAACAACTTAA
* *
22987833 TTAAACAATTTAATTAATTAGGCCTAATGATTTAATTAAAC
65 TTAAACAATTTAATCAATTAGGCCCAATGATTTAATTAAAC
*
22987874 AATTTAATTAATTAGGC
1 AATTTAATCAATTAGGC
22987891 ACAACTTAAT
Statistics
Matches: 108, Mismatches: 12, Indels: 6
0.86 0.10 0.05
Matches are distributed among these distances:
105 16 0.15
106 32 0.30
107 58 0.54
108 2 0.02
ACGTcount: A:0.42, C:0.12, G:0.07, T:0.38
Consensus pattern (105 bp):
AATTTAATCAATTAGGCCTAATAACTTAATTACACAATTTAATTAATTAGTCCCAACAACTTAAT
TAAACAATTTAATCAATTAGGCCCAATGATTTAATTAAAC
Found at i:22996666 original size:2 final size:2
Alignment explanation
Indices: 22996659--22996695 Score: 56
Period size: 2 Copynumber: 18.0 Consensus size: 2
22996649 TCCAAACCTC
*
22996659 TA TA TA TA TA TA TA TA TCA TA TA TA AA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA
22996696 ACCATTGGCC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
2 30 0.94
3 2 0.06
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (2 bp):
TA
Found at i:22996680 original size:17 final size:17
Alignment explanation
Indices: 22996660--22996692 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
22996650 CCAAACCTCT
*
22996660 ATATATATATATATATC
1 ATATATAAATATATATC
22996677 ATATATAAATATATAT
1 ATATATAAATATATAT
22996693 ATAACCATTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (17 bp):
ATATATAAATATATATC
Found at i:22996788 original size:21 final size:21
Alignment explanation
Indices: 22996764--22996830 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
22996754 AGTCGGGTCA
22996764 ACACAGCTCATGTGCACTCAT
1 ACACAGCTCATGTGCACTCAT
* * *****
22996785 ACACCGCACATG-GCTGGGTT
1 ACACAGCTCATGTGCACTCAT
22996805 AGCACAGCTCATGTGCACTCAT
1 A-CACAGCTCATGTGCACTCAT
22996827 ACAC
1 ACAC
22996831 CGCACATGGC
Statistics
Matches: 30, Mismatches: 14, Indels: 4
0.62 0.29 0.08
Matches are distributed among these distances:
20 4 0.13
21 22 0.73
22 4 0.13
ACGTcount: A:0.27, C:0.33, G:0.19, T:0.21
Consensus pattern (21 bp):
ACACAGCTCATGTGCACTCAT
Found at i:22996794 original size:42 final size:42
Alignment explanation
Indices: 22996758--22996847 Score: 153
Period size: 42 Copynumber: 2.1 Consensus size: 42
22996748 GCACATAGTC
22996758 GGGTCAACACAGCTCATGTGCACTCATACACCGCACATGGCT
1 GGGTCAACACAGCTCATGTGCACTCATACACCGCACATGGCT
* *
22996800 GGGTTAGCACAGCTCATGTGCACTCATACACCGCACATGGCT
1 GGGTCAACACAGCTCATGTGCACTCATACACCGCACATGGCT
*
22996842 TGGTCA
1 GGGTCA
22996848 TAATTATCAC
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.24, C:0.31, G:0.23, T:0.21
Consensus pattern (42 bp):
GGGTCAACACAGCTCATGTGCACTCATACACCGCACATGGCT
Found at i:22997787 original size:127 final size:127
Alignment explanation
Indices: 22997557--22997812 Score: 446
Period size: 127 Copynumber: 2.0 Consensus size: 127
22997547 AATTTTTACC
22997557 TCAATTGGGCTCAGATGCTAACCCAAGTAAAATATTGCAACCCATCGGACCAACTTTGCCAATTG
1 TCAATTGGGCTCAGATGCTAACCCAAGTAAAATATTGCAACCCATCGGACCAACTTTGCCAATTG
*
22997622 CATTGTTGGAGGCCCAAATAAATAATTTCATCTCTTTTTT-TTCTTTTTCTTT-CCATCTCTT
66 CATTGTTGGAGGCCCAAATAAATAATTTCATCTCTTTTTTCTT-TCTTTCTTTCCCATCTCTT
22997683 NTCAATTGGGCTCAGATGCTAACCCAAGTAAAATATTGCAACCCATCGGACCAACTTTGCCAATT
1 -TCAATTGGGCTCAGATGCTAACCCAAGTAAAATATTGCAACCCATCGGACCAACTTTGCCAATT
*
22997748 GCATTGTTGGAGGCCCAAATAAATAATTATC-TCTTTTTTTTCTTTCTTTCTTTCCCATCTCTT
65 GCATTGTTGGAGGCCCAAATAAATAATT-TCATCTCTTTTTTCTTTCTTTCTTTCCCATCTCTT
22997811 TC
1 TC
22997813 TCTCTCTCTC
Statistics
Matches: 124, Mismatches: 2, Indels: 6
0.94 0.02 0.05
Matches are distributed among these distances:
127 111 0.90
128 13 0.10
ACGTcount: A:0.26, C:0.24, G:0.12, T:0.37
Consensus pattern (127 bp):
TCAATTGGGCTCAGATGCTAACCCAAGTAAAATATTGCAACCCATCGGACCAACTTTGCCAATTG
CATTGTTGGAGGCCCAAATAAATAATTTCATCTCTTTTTTCTTTCTTTCTTTCCCATCTCTT
Found at i:22997986 original size:33 final size:33
Alignment explanation
Indices: 22997940--22998012 Score: 128
Period size: 33 Copynumber: 2.2 Consensus size: 33
22997930 CCAGCTCTCG
22997940 TTTTCTCTCTCAAATTTGCAGCAAAACTCTTTCT
1 TTTTC-CTCTCAAATTTGCAGCAAAACTCTTTCT
*
22997974 TTTTCCTGTCAAATTTGCAGCAAAACTCTTTCT
1 TTTTCCTCTCAAATTTGCAGCAAAACTCTTTCT
22998007 TTTTCC
1 TTTTCC
22998013 CTATCAAAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
33 33 0.87
34 5 0.13
ACGTcount: A:0.22, C:0.26, G:0.07, T:0.45
Consensus pattern (33 bp):
TTTTCCTCTCAAATTTGCAGCAAAACTCTTTCT
Found at i:23011007 original size:36 final size:35
Alignment explanation
Indices: 23010907--23011041 Score: 162
Period size: 36 Copynumber: 3.8 Consensus size: 35
23010897 TTAATTGTTT
* * *
23010907 AATTTAATCAATTAGGCCAAATAACTTAATTAAAT
1 AATTTAATTAATTAGGCCCAATAACTTAATTAAAC
* * * *
23010942 AATTTAATTAATTAAGCTCAACAATTTAATTAAAC
1 AATTTAATTAATTAGGCCCAATAACTTAATTAAAC
* *
23010977 AATTTTAATTAATTTGGCCCAATGACTTAATTAAAC
1 AA-TTTAATTAATTAGGCCCAATAACTTAATTAAAC
*
23011013 AAATTTAATTAATTAGGCCCAATAGCTTA
1 -AATTTAATTAATTAGGCCCAATAACTTA
23011042 TATCACAGCT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
35 30 0.37
36 50 0.61
37 2 0.02
ACGTcount: A:0.44, C:0.13, G:0.07, T:0.36
Consensus pattern (35 bp):
AATTTAATTAATTAGGCCCAATAACTTAATTAAAC
Found at i:23017555 original size:61 final size:61
Alignment explanation
Indices: 23017460--23017574 Score: 176
Period size: 61 Copynumber: 1.9 Consensus size: 61
23017450 TAATATCATC
* *
23017460 ACCTACTCGTGGGAACTCCCCACGCCACCAAATATAAATCAAGGCTTCAAGTCCCCCTTTT
1 ACCTACTCGTGGAAACTCCCAACGCCACCAAATATAAATCAAGGCTTCAAGTCCCCCTTTT
* * **
23017521 ACCTACTCGTGGAAACTTCCAACGCCACCAAATATAAGTTGAGGCTTCAAGTCC
1 ACCTACTCGTGGAAACTCCCAACGCCACCAAATATAAATCAAGGCTTCAAGTCC
23017575 TTTTTTTTTT
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
61 48 1.00
ACGTcount: A:0.30, C:0.33, G:0.15, T:0.23
Consensus pattern (61 bp):
ACCTACTCGTGGAAACTCCCAACGCCACCAAATATAAATCAAGGCTTCAAGTCCCCCTTTT
Found at i:23018096 original size:35 final size:36
Alignment explanation
Indices: 23018050--23018118 Score: 113
Period size: 35 Copynumber: 1.9 Consensus size: 36
23018040 ATTGTGGATT
* *
23018050 GTGTAAGGGTTATCGTTTGATCTTG-TAAAAAGCTG
1 GTGTAAAGGTTATCGCTTGATCTTGTTAAAAAGCTG
23018085 GTGTAAAGGTTATCGCTTGATCTTGTTAAAAAGC
1 GTGTAAAGGTTATCGCTTGATCTTGTTAAAAAGC
23018119 AAGAATCTTC
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
35 23 0.74
36 8 0.26
ACGTcount: A:0.28, C:0.10, G:0.26, T:0.36
Consensus pattern (36 bp):
GTGTAAAGGTTATCGCTTGATCTTGTTAAAAAGCTG
Done.