Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41236440
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2030548 characters in sequence are not A, C, G, or T
File 66 of 106
Found at i:25137709 original size:17 final size:19
Alignment explanation
Indices: 25137665--25137710 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 19
25137655 CCACCTAAAT
25137665 CTTGCTGCAGTGAGAATGAG
1 CTTGCTGCAGTGAGAA-GAG
25137685 CTTTGCTGCAGTGAGAA-A-
1 C-TTGCTGCAGTGAGAAGAG
25137703 CTTGCTGC
1 CTTGCTGC
25137711 CATGTTTGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 7 0.28
18 1 0.04
19 1 0.04
20 1 0.04
21 15 0.60
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (19 bp):
CTTGCTGCAGTGAGAAGAG
Found at i:25139709 original size:20 final size:20
Alignment explanation
Indices: 25139686--25139723 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
25139676 GGATTTTTCT
25139686 TTTTTCTTCTTTT-TCTCTGA
1 TTTTTCTT-TTTTCTCTCTGA
*
25139706 TTTTTGTTTTTTCTCTCT
1 TTTTTCTTTTTTCTCTCT
25139724 CTATTTCTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.03, C:0.18, G:0.05, T:0.74
Consensus pattern (20 bp):
TTTTTCTTTTTTCTCTCTGA
Found at i:25145931 original size:205 final size:205
Alignment explanation
Indices: 25145577--25145986 Score: 630
Period size: 205 Copynumber: 2.0 Consensus size: 205
25145567 TCGGGATACT
* *
25145577 TTTAACTGTTTTTAGCCACCAGAAAAGATTTTTGGACAAAAATGCCCTTAACAAGCTATCTTTGT
1 TTTAACTATTTTTAGCCACCAGAAAAGATTTTTGGACAAAAATGCCCTTAACAAGCTATCTTGGT
* * *
25145642 TAGCGTGCACTCTCGAACAGGCGAAAAATGGGAGAAAAAAAATAAATATGCAAAGATTGGTTGTG
66 GAGCGTGCACTCTCAAACAAGCGAAAAATGGGAGAAAAAAAATAAATATGCAAAGATTGGTTGTG
* *
25145707 CAAAATACCCAAATTTTTTTTCGAAGGTTGTGCAAAATAAAATAATGTTGCATGAGATGGGTTTT
131 CAAAATACCCAAATTTTTTTTCAAAGGTTGTGCAAAACAAAATAATGTTGCATGAGATGGGTTTT
25145772 CAGAGATTTG
196 CAGAGATTTG
* * * **
25145782 NTTTAACTATTTTTAGCCACTAGAAGAGA-TTTTGAGAC-AAAATGCCCTTGATGAGAC-ATCTT
1 -TTTAACTATTTTTAGCCACCAGAAAAGATTTTTG-GACAAAAATGCCCTTAACAAG-CTATCTT
*
25145844 CGGTGA-TGTGCACTCTCAAACAAGCGAAAAATGGGAGAAAAAAAATAAATATGCAAAGATTGGT
63 -GGTGAGCGTGCACTCTCAAACAAGCGAAAAATGGGAGAAAAAAAATAAATATGCAAAGATTGGT
*
25145908 TGTGCAAAATACCCAATTTTTTTTTCAAAGGTTGTGCAAAACAAAATAATGTTGCATGAGATGGG
127 TGTGCAAAATACCCAAATTTTTTTTCAAAGGTTGTGCAAAACAAAATAATGTTGCATGAGATGGG
25145973 TTTTCAGAGATTTG
192 TTTTCAGAGATTTG
25145987 GGACATGGCA
Statistics
Matches: 187, Mismatches: 14, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
205 155 0.83
206 32 0.17
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.30
Consensus pattern (205 bp):
TTTAACTATTTTTAGCCACCAGAAAAGATTTTTGGACAAAAATGCCCTTAACAAGCTATCTTGGT
GAGCGTGCACTCTCAAACAAGCGAAAAATGGGAGAAAAAAAATAAATATGCAAAGATTGGTTGTG
CAAAATACCCAAATTTTTTTTCAAAGGTTGTGCAAAACAAAATAATGTTGCATGAGATGGGTTTT
CAGAGATTTG
Found at i:25146265 original size:47 final size:45
Alignment explanation
Indices: 25146214--25146416 Score: 146
Period size: 46 Copynumber: 4.4 Consensus size: 45
25146204 ACGTTATGTT
25146214 GGGAATGTGTGACACAGCACCGCTT-AGAGTTGGTGAGGCAC-CATGGA
1 GGGAATGTGTGACAC-GCA--GCTTAAGAGTTGGTGA-GCACGCATGGA
* * * *
25146261 GGGAATTTGTGAGACGTCAGAGTTAAGAGTTGGTGA-CACGTCATGGT
1 GGGAATGTGTGACACG-CAG-CTTAAGAGTTGGTGAGCACG-CATGGA
* * * *
25146308 GGGAATGTGTGACACGGCAGCTTCAGAGTTTGTGAG-ATGCCGTGGA
1 GGGAATGTGTGACAC-GCAGCTTAAGAGTTGGTGAGCACG-CATGGA
** * * *
25146354 TTGAATTTGTGACACGTCAGATTAAGAGTTGGTGA-CACGGCATGAA
1 GGGAATGTGTGACACG-CAGCTTAAGAGTTGGTGAGCAC-GCATGGA
*
25146400 GGGAATCTGTGACACGC
1 GGGAATGTGTGACACGC
25146417 CAGAGTTCAG
Statistics
Matches: 121, Mismatches: 25, Indels: 22
0.72 0.15 0.13
Matches are distributed among these distances:
45 6 0.05
46 66 0.55
47 48 0.40
48 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.35, T:0.24
Consensus pattern (45 bp):
GGGAATGTGTGACACGCAGCTTAAGAGTTGGTGAGCACGCATGGA
Found at i:25146411 original size:46 final size:47
Alignment explanation
Indices: 25146239--25146445 Score: 202
Period size: 46 Copynumber: 4.4 Consensus size: 47
25146229 AGCACCGCTT
** * *
25146239 AGAGTTGGTGAGGCACCATGGAGGGAATTTGTGAGACGTCAGAGTTA
1 AGAGTTGGTGACACGCCATGGAGGGAATTTGTGACACGTCAGAGTTA
* * * * * *
25146286 AGAGTTGGTGACACGTCATGGTGGGAATGTGTGACACGGCAG-CTTC
1 AGAGTTGGTGACACGCCATGGAGGGAATTTGTGACACGTCAGAGTTA
* * * * **
25146332 AGAGTTTGTGAGATGCCGTGGATTGAATTTGTGACACGTCAGA-TTA
1 AGAGTTGGTGACACGCCATGGAGGGAATTTGTGACACGTCAGAGTTA
* * * * *
25146378 AGAGTTGGTGACACGGCATGAAGGGAATCTGTGACACGCCAGAGTTC
1 AGAGTTGGTGACACGCCATGGAGGGAATTTGTGACACGTCAGAGTTA
*
25146425 AGAATTGGTGACACGCCATGG
1 AGAGTTGGTGACACGCCATGG
25146446 TCATGTTTAG
Statistics
Matches: 123, Mismatches: 35, Indels: 4
0.76 0.22 0.02
Matches are distributed among these distances:
46 69 0.56
47 54 0.44
ACGTcount: A:0.26, C:0.15, G:0.35, T:0.24
Consensus pattern (47 bp):
AGAGTTGGTGACACGCCATGGAGGGAATTTGTGACACGTCAGAGTTA
Found at i:25146493 original size:52 final size:53
Alignment explanation
Indices: 25146433--25146543 Score: 179
Period size: 53 Copynumber: 2.1 Consensus size: 53
25146423 TCAGAATTGG
* *
25146433 TGACACGCCATGGTCAT-GTTTAGAGTGTGTGACATGGCATTGCTTGAAAAGC
1 TGACACGCCATGGTCATGGTTTAGAGTGTGTGACACGGCAGTGCTTGAAAAGC
**
25146485 TGACACGCCATGGTCATGGTTTAGAGTGTGTGACACGGCAGTGCTTGAGCAGC
1 TGACACGCCATGGTCATGGTTTAGAGTGTGTGACACGGCAGTGCTTGAAAAGC
25146538 TGACAC
1 TGACAC
25146544 ATCATGATTT
Statistics
Matches: 54, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
52 17 0.31
53 37 0.69
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.26
Consensus pattern (53 bp):
TGACACGCCATGGTCATGGTTTAGAGTGTGTGACACGGCAGTGCTTGAAAAGC
Found at i:25147065 original size:31 final size:31
Alignment explanation
Indices: 25147017--25147313 Score: 321
Period size: 31 Copynumber: 9.6 Consensus size: 31
25147007 AGTTAGTTAT
*
25147017 TGGCGTGTGACAGCATTTTACTTGATATGCA
1 TGGCGTGTGACAACATTTTACTTGATATGCA
* * *
25147048 TAGCATCTGACAACATTTTACTTGATATGCA
1 TGGCGTGTGACAACATTTTACTTGATATGCA
* * *
25147079 TGACGTGTGACAGCATTTTACTTTATATGCA
1 TGGCGTGTGACAACATTTTACTTGATATGCA
* * *
25147110 TGTCGTGTCACAGA-ATTTTACTTGTTATGCA
1 TGGCGTGTGACA-ACATTTTACTTGATATGCA
*
25147141 TGGCGTGTGACAGCATTTTACTTGATATGCA
1 TGGCGTGTGACAACATTTTACTTGATATGCA
* * *
25147172 TGGCGTGTGACAGCATTTTACTTTATATGCG
1 TGGCGTGTGACAACATTTTACTTGATATGCA
* * * * *
25147203 TGGCGTGTCATAACGTTTAACTTGTTATGCA
1 TGGCGTGTGACAACATTTTACTTGATATGCA
* *
25147234 TGGCGTGTCACAACATTTTACTTGTTATGCA
1 TGGCGTGTGACAACATTTTACTTGATATGCA
* *
25147265 TGGTGTGTCACAACATTTTGA-TTGCA-ATGCA
1 TGGCGTGTGACAACATTTT-ACTTG-ATATGCA
* *
25147296 TGGCGTGTCATAACATTT
1 TGGCGTGTGACAACATTT
25147314 ATTCCTTATT
Statistics
Matches: 226, Mismatches: 36, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
31 225 1.00
32 1 0.00
ACGTcount: A:0.24, C:0.17, G:0.22, T:0.38
Consensus pattern (31 bp):
TGGCGTGTGACAACATTTTACTTGATATGCA
Found at i:25147179 original size:93 final size:93
Alignment explanation
Indices: 25147017--25147305 Score: 359
Period size: 93 Copynumber: 3.1 Consensus size: 93
25147007 AGTTAGTTAT
* * * * * * *
25147017 TGGCGTGTGACAGCATTTTACTTGATATGCATAGCATCTGACAACATTTTACTTGATATGCATGA
1 TGGCGTGTCACAGAATTTTACTTGTTATGCATGGCGTGTGACAACATTTTACTTGATATGCATGG
25147082 CGTGTGACAGCATTTTACTTTATATGCA
66 CGTGTGACAGCATTTTACTTTATATGCA
* *
25147110 TGTCGTGTCACAGAATTTTACTTGTTATGCATGGCGTGTGACAGCATTTTACTTGATATGCATGG
1 TGGCGTGTCACAGAATTTTACTTGTTATGCATGGCGTGTGACAACATTTTACTTGATATGCATGG
*
25147175 CGTGTGACAGCATTTTACTTTATATGCG
66 CGTGTGACAGCATTTTACTTTATATGCA
* * * * *
25147203 TGGCGTGTCATA-ACGTTTAACTTGTTATGCATGGCGTGTCACAACATTTTACTTGTTATGCATG
1 TGGCGTGTCACAGA-ATTTTACTTGTTATGCATGGCGTGTGACAACATTTTACTTGATATGCATG
* * * *
25147267 GTGTGTCACAACATTTTGA-TTGCA-ATGCA
65 GCGTGTGACAGCATTTT-ACTT-TATATGCA
25147296 TGGCGTGTCA
1 TGGCGTGTCA
25147306 TAACATTTAT
Statistics
Matches: 171, Mismatches: 22, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
92 1 0.01
93 168 0.98
94 2 0.01
ACGTcount: A:0.24, C:0.17, G:0.22, T:0.37
Consensus pattern (93 bp):
TGGCGTGTCACAGAATTTTACTTGTTATGCATGGCGTGTGACAACATTTTACTTGATATGCATGG
CGTGTGACAGCATTTTACTTTATATGCA
Found at i:25149143 original size:156 final size:156
Alignment explanation
Indices: 25148957--25149437 Score: 685
Period size: 156 Copynumber: 3.1 Consensus size: 156
25148947 CAATAATTTC
*** * * * *
25148957 TGTAATTGCAGTTTATGGAAGCAACGACAGGTCCTCAAGCACCGATCAATCCAGCTCAACCGCAG
1 TGTAATTGCAGTTTGCAGAAGCGACGACAGGTCCTGAAGCACCGATCAGTCCAGCTCCACCGCAG
25149022 ACAGCTAACGAGCCAACGGTAAGGATATTAAAGTTGTAACGGTTAATGTTCAACAATTCCATACA
66 ACAGCTAACGAGCCAACGGTAAGGATATTAAAGTTGTAACGGTTAATGTTCAACAATTCCATACA
25149087 TGATTATTGAATAACACAGTTATATA
131 TGATTATTGAATAACACAGTTATATA
* * *
25149113 TGTAATTGCAGTTTGCAGAAGCGACGACAGGTCTTGAAGCACCGATCTGTCC-GACTCCACCGTA
1 TGTAATTGCAGTTTGCAGAAGCGACGACAGGTCCTGAAGCACCGATCAGTCCAG-CTCCACCGCA
* * *
25149177 GACAACTAACGAGCCGACGGTAAAGATATTAAAGTTGTAACGGTTAATGTTCAACAATTCCATAC
65 GACAGCTAACGAGCCAACGGTAAGGATATTAAAGTTGTAACGGTTAATGTTCAACAATTCCATAC
*
25149242 ATGATTATTGAATAACACAGTTAAATA
130 ATGATTATTGAATAACACAGTTATATA
* * * * ** *
25149269 TGTAATTACAGTATGCAGAAGCGACGACAGGTCCTGAAGCACCGATCGGTCCAACTCCACAACAA
1 TGTAATTGCAGTTTGCAGAAGCGACGACAGGTCCTGAAGCACCGATCAGTCCAGCTCCACCGCAG
* * * * * *
25149334 ACTGCTAACGAGCCACCGGTTAGGATATTAAAGTTGTAACGATTAATGTTCAATAATTCCATATA
66 ACAGCTAACGAGCCAACGGTAAGGATATTAAAGTTGTAACGGTTAATGTTCAACAATTCCATACA
25149399 TGATTATTGAATAACACAGTTATATA
131 TGATTATTGAATAACACAGTTATATA
* *
25149425 TGTTATTGTAGTT
1 TGTAATTGCAGTT
25149438 GACCCAGTCC
Statistics
Matches: 286, Mismatches: 37, Indels: 4
0.87 0.11 0.01
Matches are distributed among these distances:
155 1 0.00
156 285 1.00
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.27
Consensus pattern (156 bp):
TGTAATTGCAGTTTGCAGAAGCGACGACAGGTCCTGAAGCACCGATCAGTCCAGCTCCACCGCAG
ACAGCTAACGAGCCAACGGTAAGGATATTAAAGTTGTAACGGTTAATGTTCAACAATTCCATACA
TGATTATTGAATAACACAGTTATATA
Found at i:25149831 original size:31 final size:31
Alignment explanation
Indices: 25149793--25150091 Score: 280
Period size: 31 Copynumber: 9.6 Consensus size: 31
25149783 GTCAGCTTTA
*
25149793 GCGTGTCACAACATTTTACTTGTTATTCATG
1 GCGTGTCACAACATTTTACTTGTTATGCATG
* * * * *
25149824 GCGTGTCACAACGTTTGATTTGATATGCACG
1 GCGTGTCACAACATTTTACTTGTTATGCATG
* * * * *
25149855 GCTTGTCAGAACATTTTGCTTGTTATCCTTG
1 GCGTGTCACAACATTTTACTTGTTATGCATG
* *
25149886 GCGTGTCACCA-AGTTTATCTTGTTATGCATG
1 GCGTGTCACAACATTTTA-CTTGTTATGCATG
* * *
25149917 GCATGTCACAACATTTTAATTGTTTTGCATG
1 GCGTGTCACAACATTTTACTTGTTATGCATG
* * * * * *
25149948 GCATGTCACAACATTTTCCTCGTTATCCTTA
1 GCGTGTCACAACATTTTACTTGTTATGCATG
* *
25149979 GCGTGTCACCA-AGTTTATCTTGTTATGCATG
1 GCGTGTCACAACATTTTA-CTTGTTATGCATG
* * *
25150010 GCGTGTCACGACATTTTACTTGTTTTACATG
1 GCGTGTCACAACATTTTACTTGTTATGCATG
* * *
25150041 ACGTGTGACAACATTTTACTTGGTATGCACT-
1 GCGTGTCACAACATTTTACTTGTTATGCA-TG
25150072 GCGTGTCACAACATTTTACT
1 GCGTGTCACAACATTTTACT
25150092 GTTTATGGTT
Statistics
Matches: 208, Mismatches: 55, Indels: 10
0.76 0.20 0.04
Matches are distributed among these distances:
30 8 0.04
31 189 0.91
32 11 0.05
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (31 bp):
GCGTGTCACAACATTTTACTTGTTATGCATG
Found at i:25149955 original size:93 final size:93
Alignment explanation
Indices: 25149790--25150057 Score: 331
Period size: 93 Copynumber: 2.9 Consensus size: 93
25149780 CATGTCAGCT
* * * * * * * * *
25149790 TTAGCGTGTCACAACATTTTA-CTTGTTATTCATGGCGTGTCACAACGTTTGATTTGATATGCAC
1 TTAGCGTGTCACCA-AGTTTATCTTGTTATGCATGGCGTGTCACAACATTTTAATTGTTTTGCAT
* * * *
25149854 GGCTTGTCAGAACATTTTGCTTGTTATCC
65 GGCATGTCACAACATTTTCCTCGTTATCC
* *
25149883 TTGGCGTGTCACCAAGTTTATCTTGTTATGCATGGCATGTCACAACATTTTAATTGTTTTGCATG
1 TTAGCGTGTCACCAAGTTTATCTTGTTATGCATGGCGTGTCACAACATTTTAATTGTTTTGCATG
25149948 GCATGTCACAACATTTTCCTCGTTATCC
66 GCATGTCACAACATTTTCCTCGTTATCC
* * *
25149976 TTAGCGTGTCACCAAGTTTATCTTGTTATGCATGGCGTGTCACGACATTTTACTTGTTTTACATG
1 TTAGCGTGTCACCAAGTTTATCTTGTTATGCATGGCGTGTCACAACATTTTAATTGTTTTGCATG
* * *
25150041 ACGTGTGACAACATTTT
66 GCATGTCACAACATTTT
25150058 ACTTGGTATG
Statistics
Matches: 151, Mismatches: 23, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
92 5 0.03
93 146 0.97
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.40
Consensus pattern (93 bp):
TTAGCGTGTCACCAAGTTTATCTTGTTATGCATGGCGTGTCACAACATTTTAATTGTTTTGCATG
GCATGTCACAACATTTTCCTCGTTATCC
Found at i:25151616 original size:16 final size:15
Alignment explanation
Indices: 25151555--25151631 Score: 61
Period size: 14 Copynumber: 5.2 Consensus size: 15
25151545 AATTTTTTTG
25151555 GTATACAGAATTT-TT
1 GTATACA-AATTTATT
* *
25151570 TTATAC-AATTCATT
1 GTATACAAATTTATT
* * *
25151584 TTATACACATTTTTT
1 GTATACAAATTTATT
25151599 GTATACATAATTTATT
1 GTATACA-AATTTATT
*
25151615 GTATAC-AATTCATT
1 GTATACAAATTTATT
25151629 GTA
1 GTA
25151632 AATAGATATA
Statistics
Matches: 50, Mismatches: 9, Indels: 7
0.76 0.14 0.11
Matches are distributed among these distances:
13 4 0.08
14 18 0.36
15 16 0.32
16 12 0.24
ACGTcount: A:0.34, C:0.10, G:0.06, T:0.49
Consensus pattern (15 bp):
GTATACAAATTTATT
Found at i:25153048 original size:31 final size:31
Alignment explanation
Indices: 25152723--25153059 Score: 328
Period size: 31 Copynumber: 11.0 Consensus size: 31
25152713 ACACACCAAA
* *
25152723 ACTTGTTATGCATGGC-TGGTCAGAACAATTT
1 ACTTGTTATGCATGGCGT-GTCACAACATTTT
* * *
25152754 AATTG-T-TGCATGGCGCT-TCACAACGTTTA
1 ACTTGTTATGCATGGCG-TGTCACAACATTTT
* *
25152783 ACTTGTTATGCATGGCATGTCACAACCTTTT
1 ACTTGTTATGCATGGCGTGTCACAACATTTT
* * *
25152814 ACTTGTTATGCATGGCAG-GTTAGAACAATTT
1 ACTTGTTATGCATGGC-GTGTCACAACATTTT
* * * * * *
25152845 AATTGATATGCATGGCGTATCATAACGTTTA
1 ACTTGTTATGCATGGCGTGTCACAACATTTT
*
25152876 ACTTGTTATGCATGGCGTGTCAGC-ACAATTT
1 ACTTGTTATGCATGGCGTGTCA-CAACATTTT
* *
25152907 ACTTGTTATGCATGGCATGTCACAACGTTTT
1 ACTTGTTATGCATGGCGTGTCACAACATTTT
***
25152938 ACTTGTTATGCATGGCGTGTCATTTCATTTT
1 ACTTGTTATGCATGGCGTGTCACAACATTTT
* * *
25152969 TCTTGTTATGCACGGCGTGTCACAATATTTT
1 ACTTGTTATGCATGGCGTGTCACAACATTTT
* * *
25153000 ATTTGATATGCACGGCGTGTCACAACATTTT
1 ACTTGTTATGCATGGCGTGTCACAACATTTT
*
25153031 ACTTGTTATGCATGGCGTGTCTC-ACATTT
1 ACTTGTTATGCATGGCGTGTCACAACATTT
25153060 ATTCCTTATT
Statistics
Matches: 246, Mismatches: 51, Indels: 19
0.78 0.16 0.06
Matches are distributed among these distances:
29 20 0.08
30 11 0.04
31 215 0.87
ACGTcount: A:0.23, C:0.18, G:0.20, T:0.38
Consensus pattern (31 bp):
ACTTGTTATGCATGGCGTGTCACAACATTTT
Found at i:25156616 original size:23 final size:23
Alignment explanation
Indices: 25156588--25156666 Score: 113
Period size: 23 Copynumber: 3.4 Consensus size: 23
25156578 TCAAGTCAAA
* *
25156588 TGTCGTGACACGCCATACATCAA
1 TGTCGTGACACGCCATGCATCAC
* *
25156611 TATCGTTACACGCCATGCATCAC
1 TGTCGTGACACGCCATGCATCAC
*
25156634 TGTGGTGACACGCCATGCATCAC
1 TGTCGTGACACGCCATGCATCAC
25156657 TGTCGTGACA
1 TGTCGTGACA
25156667 TGTCAATCAC
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 48 1.00
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.24
Consensus pattern (23 bp):
TGTCGTGACACGCCATGCATCAC
Found at i:25156766 original size:55 final size:55
Alignment explanation
Indices: 25156700--25156863 Score: 154
Period size: 55 Copynumber: 3.0 Consensus size: 55
25156690 TGGTTACACC
* *
25156700 AACATCCATGACAAGCTAAAAACCCAAAAAATCAGTTAACCCACGACACGCCAGG
1 AACAACCATGACAAGCTAAAAACCCAAAAAATCAGTTAACCCACAACACGCCAGG
* * * * * *
25156755 AACAACCATGACATGCCAAAAACCCATAAATTCAGTTAACCCACCACAAC-CTAGG
1 AACAACCATGACAAGCTAAAAACCCAAAAAATCAGTTAACCCACAAC-ACGCCAGG
* * * * * *
25156810 AATAGCCGTGACACGCTAACAA-CCAAAATAA-CTAGTTAACCCACAACATGCCAG
1 AACAACCATGACAAGCTAAAAACCCAAAA-AATC-AGTTAACCCACAACACGCCAG
25156864 TAACGTCGTG
Statistics
Matches: 87, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
54 7 0.08
55 78 0.90
56 2 0.02
ACGTcount: A:0.44, C:0.31, G:0.12, T:0.13
Consensus pattern (55 bp):
AACAACCATGACAAGCTAAAAACCCAAAAAATCAGTTAACCCACAACACGCCAGG
Found at i:25162157 original size:626 final size:626
Alignment explanation
Indices: 25160966--25162218 Score: 2301
Period size: 626 Copynumber: 2.0 Consensus size: 626
25160956 AATCTCCCAC
* *
25160966 TAAGCATTGATTTTGACATGGGATATTTGAGAAGATCTGCTTGTGAAATTAAGTGAATAGAATAA
1 TAAGCATTGATTTTGACATGGGATATTTGAGAAGATCTACTTGTGAAATTAAGTGAATAAAATAA
** *
25161031 GCTGAAAATAATATCTTAATTTCTTAATTGCAAAGATCAATGCCAAACATGTCTTCTTAATGGGG
66 GCAAAAAATAATATCTTAATTTCTTAATTGCAAAGATCAATGCCAAACATGTCTTCTTAATGGGA
*
25161096 GAATAATTCAATTCTGCATCATTAAGAGCTCTACTAAGGTAGTAAATAGCACTTTCTGTTCCTTC
131 GAATAATTCAATTCTGCACCATTAAGAGCTCTACTAAGGTAGTAAATAGCACTTTCTGTTCCTTC
*
25161161 ATCGTTTTGTTGTGCCAAAAGTGCTTCTATAAAGTACTCTTGTACCGTAATATAAAGGATCAATG
196 ATCGTTTTGTTATGCCAAAAGTGCTTCTATAAAGTACTCTTGTACCGTAATATAAAGGATCAATG
25161226 GATGTCCAACTGTAAAAGTCTTTAAACTTGGAGGCCCTAGTAAATCAGACTTTATGCTTTTAAAG
261 GATGTCCAACTGTAAAAGTCTTTAAACTTGGAGGCCCTAGTAAATCAGACTTTATGCTTTTAAAG
25161291 GCATTACTACAAGACTCATCCCAAACGAAAGCTGTATCTTTCTTCATCAAACGGCTAAATGGTTG
326 GCATTACTACAAGACTCATCCCAAACGAAAGCTGTATCTTTCTTCATCAAACGGCTAAATGGTTG
* *
25161356 ACATTTTAGATATGAAGTGTCGAATATAAGCCAATCTTCCTTGCAAACTTTTAAGTTCATGGAGA
391 ACATTTTAGATATGAAATGTCGAATATAAGCCAATCTTCCTTGCAAACTTTTAAGTTCATAGAGA
*
25161421 TTACTTGGTTCAGGCATTTTCATGATTGAATTTATGCTTGATTGATAAATTTCAATCCCACAATG
456 TTACTTGGTTCAGGCATCTTCATGATTGAATTTATGCTTGATTGATAAATTTCAATCCCACAATG
* *
25161486 CCGCACTTTAAATCCCAAAAATTTACCAAAAAATACAGTAAAGGCACATTTGAAAGGATTCATCT
521 CCACACTTTAAATCCCAAAAATTTACCAAAAAATACACTAAAGGCACATTTGAAAGGATTCATCT
25161551 TCAATTGATATCAACGCAATCTTTCGAATACATGGTGAAGA
586 TCAATTGATATCAACGCAATCTTTCGAATACATGGTGAAGA
25161592 TAAGCATTGATTTTGACATGGGATATTTGAGAAGATCTACTTGTGAAATTAAGTGAATAAAATAA
1 TAAGCATTGATTTTGACATGGGATATTTGAGAAGATCTACTTGTGAAATTAAGTGAATAAAATAA
*
25161657 GCAAAAAATAATATCTTAATTTCTTAATTGCAAAGATCAATGCCAAACATGTCTTTTTAATGGGA
66 GCAAAAAATAATATCTTAATTTCTTAATTGCAAAGATCAATGCCAAACATGTCTTCTTAATGGGA
*
25161722 GAATAATTTAATTCTGCACCATTAAGAGCTCTACTAAGGTAGTAAATAGCACTTTCTGTTCCTTC
131 GAATAATTCAATTCTGCACCATTAAGAGCTCTACTAAGGTAGTAAATAGCACTTTCTGTTCCTTC
25161787 ATCGTTTTGTTATGCCAAAAGTGCTTCTATAAAGTACTCTTGTACCGTAATATAAAGGATCAATG
196 ATCGTTTTGTTATGCCAAAAGTGCTTCTATAAAGTACTCTTGTACCGTAATATAAAGGATCAATG
** *
25161852 GATGTCCAACTGTAGGAGTCTTTAAACTTGGAGGCCTTAGTAAATCAGACTTTATGCTTTTAAAG
261 GATGTCCAACTGTAAAAGTCTTTAAACTTGGAGGCCCTAGTAAATCAGACTTTATGCTTTTAAAG
*
25161917 GCATTACTACAAGACTCATCCCAAACGAAAGCTGTATCTTTCTTCATTAAACGGCTAAATGGTTG
326 GCATTACTACAAGACTCATCCCAAACGAAAGCTGTATCTTTCTTCATCAAACGGCTAAATGGTTG
25161982 ACATTTTAGATATGAAATGTCGAATATAAGCCAATCTTCCTTGCAAACTTTTAAGTTCATAGAGA
391 ACATTTTAGATATGAAATGTCGAATATAAGCCAATCTTCCTTGCAAACTTTTAAGTTCATAGAGA
25162047 TTACTTGGTTCAGGCATCTTCATGATTGAATCTT-TGCTTGATTGATAAATTTCAATCCCACAAT
456 TTACTTGGTTCAGGCATCTTCATGATTGAAT-TTATGCTTGATTGATAAATTTCAATCCCACAAT
* *
25162111 GCCACACTTTAAATCCCAAAAATTTACCAAAAGATACACTAAAGGCACATTTTAAAGGATTCATC
520 GCCACACTTTAAATCCCAAAAATTTACCAAAAAATACACTAAAGGCACATTTGAAAGGATTCATC
*
25162176 TTCAATTGATATCAATGCAATCTTTCGAATACATGGTGAAGA
585 TTCAATTGATATCAACGCAATCTTTCGAATACATGGTGAAGA
25162218 T
1 T
25162219 CTTTAAGATG
Statistics
Matches: 605, Mismatches: 21, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
626 603 1.00
627 2 0.00
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Consensus pattern (626 bp):
TAAGCATTGATTTTGACATGGGATATTTGAGAAGATCTACTTGTGAAATTAAGTGAATAAAATAA
GCAAAAAATAATATCTTAATTTCTTAATTGCAAAGATCAATGCCAAACATGTCTTCTTAATGGGA
GAATAATTCAATTCTGCACCATTAAGAGCTCTACTAAGGTAGTAAATAGCACTTTCTGTTCCTTC
ATCGTTTTGTTATGCCAAAAGTGCTTCTATAAAGTACTCTTGTACCGTAATATAAAGGATCAATG
GATGTCCAACTGTAAAAGTCTTTAAACTTGGAGGCCCTAGTAAATCAGACTTTATGCTTTTAAAG
GCATTACTACAAGACTCATCCCAAACGAAAGCTGTATCTTTCTTCATCAAACGGCTAAATGGTTG
ACATTTTAGATATGAAATGTCGAATATAAGCCAATCTTCCTTGCAAACTTTTAAGTTCATAGAGA
TTACTTGGTTCAGGCATCTTCATGATTGAATTTATGCTTGATTGATAAATTTCAATCCCACAATG
CCACACTTTAAATCCCAAAAATTTACCAAAAAATACACTAAAGGCACATTTGAAAGGATTCATCT
TCAATTGATATCAACGCAATCTTTCGAATACATGGTGAAGA
Found at i:25167330 original size:19 final size:20
Alignment explanation
Indices: 25167303--25167348 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
25167293 AGGAGACAAG
*
25167303 ATAAAATTTTTA-AAATAAA
1 ATAATATTTTTATAAATAAA
*
25167322 ATAATA-TTTTATTAATAAA
1 ATAATATTTTTATAAATAAA
25167341 ATAATATT
1 ATAATATT
25167349 AAAATATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 5 0.22
19 17 0.74
20 1 0.04
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (20 bp):
ATAATATTTTTATAAATAAA
Found at i:25171923 original size:14 final size:14
Alignment explanation
Indices: 25171904--25171950 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
25171894 GGAGTGCTAG
25171904 AAATTTGTACACAC
1 AAATTTGTACACAC
* *
25171918 AAATTTCT-CATC-G
1 AAATTTGTACA-CAC
25171931 AAATTTGTACACAC
1 AAATTTGTACACAC
25171945 AAATTT
1 AAATTT
25171951 CTCATCGAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 6
0.72 0.11 0.17
Matches are distributed among these distances:
13 10 0.38
14 16 0.62
ACGTcount: A:0.40, C:0.19, G:0.06, T:0.34
Consensus pattern (14 bp):
AAATTTGTACACAC
Found at i:25171936 original size:13 final size:13
Alignment explanation
Indices: 25171918--25171965 Score: 53
Period size: 13 Copynumber: 3.6 Consensus size: 13
25171908 TTGTACACAC
25171918 AAATTTCTCATCG
1 AAATTTCTCATCG
* *
25171931 AAATTTGTACA-CAC
1 AAATTTCT-CATC-G
25171945 AAATTTCTCATCG
1 AAATTTCTCATCG
25171958 AAATTTCT
1 AAATTTCT
25171966 TGACTTGAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
13 18 0.64
14 10 0.36
ACGTcount: A:0.35, C:0.21, G:0.06, T:0.38
Consensus pattern (13 bp):
AAATTTCTCATCG
Found at i:25171941 original size:27 final size:27
Alignment explanation
Indices: 25171903--25171963 Score: 122
Period size: 27 Copynumber: 2.3 Consensus size: 27
25171893 GGGAGTGCTA
25171903 GAAATTTGTACACACAAATTTCTCATC
1 GAAATTTGTACACACAAATTTCTCATC
25171930 GAAATTTGTACACACAAATTTCTCATC
1 GAAATTTGTACACACAAATTTCTCATC
25171957 GAAATTT
1 GAAATTT
25171964 CTTGACTTGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.38, C:0.20, G:0.08, T:0.34
Consensus pattern (27 bp):
GAAATTTGTACACACAAATTTCTCATC
Found at i:25172130 original size:52 final size:53
Alignment explanation
Indices: 25172060--25172196 Score: 152
Period size: 54 Copynumber: 2.6 Consensus size: 53
25172050 GTCTTCAAGA
* ***
25172060 GTCTTGACAACTTGATCTTGATCACAAACTTTGCTT-GATCTTCGCTTTAAAG-
1 GTCTTGACGACTTGATCTTGATCACAAACTACACTTAGATCTTCGC-TTAAAGT
* * * *
25172112 GTCTTGACGACTTAATCTTGATCACGAACTACACTTAATATCTTCGCTTCAAGT
1 GTCTTGACGACTTGATCTTGATCACAAACTACACTT-AGATCTTCGCTTAAAGT
* *
25172166 GTCTTTACGACTTGATCTTAATCACAAACTA
1 GTCTTGACGACTTGATCTTGATCACAAACTA
25172197 TATTTGATAG
Statistics
Matches: 70, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
52 30 0.43
53 5 0.07
54 35 0.50
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.36
Consensus pattern (53 bp):
GTCTTGACGACTTGATCTTGATCACAAACTACACTTAGATCTTCGCTTAAAGT
Found at i:25172215 original size:25 final size:25
Alignment explanation
Indices: 25172186--25172246 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 25
25172176 CTTGATCTTA
*
25172186 ATCACAAACTAT-ATTTGATAG-CTTG
1 ATCACAAACT-TCACTTGAT-GCCTTG
*
25172211 ATCACAAACTTCGCTTGATGCCTTG
1 ATCACAAACTTCACTTGATGCCTTG
25172236 ATCACAAACTT
1 ATCACAAACTT
25172247 TGTTGTCACT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
24 2 0.06
25 30 0.94
ACGTcount: A:0.33, C:0.23, G:0.11, T:0.33
Consensus pattern (25 bp):
ATCACAAACTTCACTTGATGCCTTG
Found at i:25174928 original size:29 final size:29
Alignment explanation
Indices: 25174858--25174928 Score: 106
Period size: 30 Copynumber: 2.4 Consensus size: 29
25174848 AAAAAATTTT
*
25174858 AAAAAATTCTTATATTTTTATTTTAAATC
1 AAAAAAATCTTATATTTTTATTTTAAATC
**
25174887 AAATAAGCTCTTATATTTTTATTTTAAATC
1 AAA-AAAATCTTATATTTTTATTTTAAATC
25174917 AAAAAAATCTTA
1 AAAAAAATCTTA
25174929 ATAATTAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
29 10 0.27
30 27 0.73
ACGTcount: A:0.44, C:0.08, G:0.01, T:0.46
Consensus pattern (29 bp):
AAAAAAATCTTATATTTTTATTTTAAATC
Found at i:25177672 original size:2 final size:2
Alignment explanation
Indices: 25177665--25177692 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
25177655 TCCCTCCCCA
25177665 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
25177693 GCTTCTCGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:25181472 original size:16 final size:16
Alignment explanation
Indices: 25181439--25181489 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
25181429 AATTAAACAG
*
25181439 AAATGAAAGGATAAAA
1 AAATGAAAAGATAAAA
*
25181455 AAATGAAAAGA-AAGA
1 AAATGAAAAGATAAAA
25181470 AAA-GAAAACGACTAAAA
1 AAATGAAAA-GA-TAAAA
25181487 AAA
1 AAA
25181490 AGGGAACTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
14 5 0.17
15 8 0.28
16 10 0.34
17 6 0.21
ACGTcount: A:0.73, C:0.04, G:0.16, T:0.08
Consensus pattern (16 bp):
AAATGAAAAGATAAAA
Found at i:25182243 original size:35 final size:35
Alignment explanation
Indices: 25182192--25182317 Score: 200
Period size: 35 Copynumber: 3.6 Consensus size: 35
25182182 AACAACCATT
* *
25182192 ATAAGTGAAGTACTACTTCATGTAAAACTACTAAA
1 ATAAGTGAAGTGCTACTTCATGCAAAACTACTAAA
*
25182227 ATAAGTGAAATGCTACTTCATGCAAAACTACTAAA
1 ATAAGTGAAGTGCTACTTCATGCAAAACTACTAAA
25182262 ATAAGTGAAGTGCTACTTCATGCAAAACTACTAAA
1 ATAAGTGAAGTGCTACTTCATGCAAAACTACTAAA
*
25182297 ATAAGT-AGAGTACTACTTCAT
1 ATAAGTGA-AGTGCTACTTCAT
25182318 ACGGAATAAC
Statistics
Matches: 85, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
34 1 0.01
35 84 0.99
ACGTcount: A:0.44, C:0.16, G:0.13, T:0.28
Consensus pattern (35 bp):
ATAAGTGAAGTGCTACTTCATGCAAAACTACTAAA
Found at i:25183809 original size:28 final size:28
Alignment explanation
Indices: 25183776--25183832 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
25183766 GTGGATTGAA
25183776 ATACCTTGATTACCAAGAAAATGGATGT
1 ATACCTTGATTACCAAGAAAATGGATGT
* *
25183804 ATACCTTGGTTACCAAGGAAATGGATGT
1 ATACCTTGATTACCAAGAAAATGGATGT
25183832 A
1 A
25183833 GGCATCTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.37, C:0.14, G:0.21, T:0.28
Consensus pattern (28 bp):
ATACCTTGATTACCAAGAAAATGGATGT
Found at i:25185857 original size:37 final size:37
Alignment explanation
Indices: 25185806--25185904 Score: 128
Period size: 37 Copynumber: 2.7 Consensus size: 37
25185796 TCATCGTCAT
* *
25185806 GTGCACTCCATACTCACATA-TTCTATCATCATCATGC
1 GTGCACTCCATACTCACACACTTC-AACATCATCATGC
* * *
25185843 GTGCACTCCCTACTCGCACACTTCAACATCATCATGT
1 GTGCACTCCATACTCACACACTTCAACATCATCATGC
*
25185880 GTGCACTCCTTACTCACACACTTCA
1 GTGCACTCCATACTCACACACTTCA
25185905 GCACTCTCTA
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
37 51 0.94
38 3 0.06
ACGTcount: A:0.25, C:0.36, G:0.09, T:0.29
Consensus pattern (37 bp):
GTGCACTCCATACTCACACACTTCAACATCATCATGC
Found at i:25185908 original size:23 final size:23
Alignment explanation
Indices: 25185882--25185927 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
25185872 CATCATGTGT
25185882 GCACTC-CTTACTCACACACTTCA
1 GCACTCTC-TACTCACACACTTCA
*
25185905 GCACTCTCTACTCGCACACTTCA
1 GCACTCTCTACTCACACACTTCA
25185928 ACATCATCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 20 0.95
24 1 0.05
ACGTcount: A:0.24, C:0.43, G:0.07, T:0.26
Consensus pattern (23 bp):
GCACTCTCTACTCACACACTTCA
Found at i:25185938 original size:60 final size:60
Alignment explanation
Indices: 25185845--25185964 Score: 204
Period size: 60 Copynumber: 2.0 Consensus size: 60
25185835 CATCATGCGT
* *
25185845 GCACTCCCTACTCGCACACTTCAACATCATCATGTGTGCACTCCTTACTCACACACTTCA
1 GCACTCCCTACTCGCACACTTCAACATCATCATGTGTGCACTCCCTACTCACAAACTTCA
* *
25185905 GCACTCTCTACTCGCACACTTCAACATCATCATGTGTGCACTCCCTACTCGCAAACTTCA
1 GCACTCCCTACTCGCACACTTCAACATCATCATGTGTGCACTCCCTACTCACAAACTTCA
25185965 ACATCATCAC
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
60 56 1.00
ACGTcount: A:0.25, C:0.39, G:0.09, T:0.27
Consensus pattern (60 bp):
GCACTCCCTACTCGCACACTTCAACATCATCATGTGTGCACTCCCTACTCACAAACTTCA
Found at i:25187996 original size:2 final size:2
Alignment explanation
Indices: 25187991--25188026 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
25187981 TTTCTAATCA
25187991 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
25188027 TACAGCAAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:25188167 original size:2 final size:2
Alignment explanation
Indices: 25188160--25188194 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
25188150 NNNNNNNNNN
25188160 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
25188195 TCAAGCAAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:25189705 original size:34 final size:36
Alignment explanation
Indices: 25189664--25189749 Score: 115
Period size: 34 Copynumber: 2.4 Consensus size: 36
25189654 CCAACAGTGT
25189664 TTGATCCTTAAAAGGAATTT-G-GTAGAGGTTGTGC
1 TTGATCCTTAAAAGGAATTTCGTGTAGAGGTTGTGC
* *
25189698 TTTATCCTTAAAAGGCATTTCGATTGTAGAGGTTGTGC
1 TTGATCCTTAAAAGGAATTTCG--TGTAGAGGTTGTGC
25189736 TTGAT-CTTAAAAGG
1 TTGATCCTTAAAAGG
25189750 CAATGACTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
34 18 0.40
35 1 0.02
37 9 0.20
38 17 0.38
ACGTcount: A:0.27, C:0.10, G:0.26, T:0.37
Consensus pattern (36 bp):
TTGATCCTTAAAAGGAATTTCGTGTAGAGGTTGTGC
Found at i:25193353 original size:26 final size:28
Alignment explanation
Indices: 25193323--25193377 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 28
25193313 CAAAAGTTAT
25193323 TTTGATTGAA-AT-TAAAAATATAAAAA
1 TTTGATTGAATATATAAAAATATAAAAA
25193349 TTTGATTGAATATAATAAAAATATAAAAA
1 TTTGATTGAATAT-ATAAAAATATAAAAA
25193378 CTTATTTGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
26 10 0.38
27 2 0.08
29 14 0.54
ACGTcount: A:0.58, C:0.00, G:0.07, T:0.35
Consensus pattern (28 bp):
TTTGATTGAATATATAAAAATATAAAAA
Found at i:25206087 original size:17 final size:16
Alignment explanation
Indices: 25206045--25206087 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
25206035 GCATATGAAA
*
25206045 ATTTATTTAGTATTTT
1 ATTTATTTAGGATTTT
*
25206061 AGTTAGTTTAGGATTTT
1 ATTTA-TTTAGGATTTT
25206078 ATTTTATTTA
1 A-TTTATTTA
25206088 TTTAATTTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
16 4 0.18
17 15 0.68
18 3 0.14
ACGTcount: A:0.26, C:0.00, G:0.12, T:0.63
Consensus pattern (16 bp):
ATTTATTTAGGATTTT
Found at i:25206302 original size:262 final size:262
Alignment explanation
Indices: 25205909--25206433 Score: 1016
Period size: 262 Copynumber: 2.0 Consensus size: 262
25205899 AAACTGCAAC
25205909 TCAGCCATGCTAATTCTCATGAGAGAAACCTCCGTAACATAGTATTGACCAAACAAGCTTATTAT
1 TCAGCCATGCTAATTCTCATGAGAGAAACCTCCGTAACATAGTATTGACCAAACAAGCTTATTAT
25205974 TCTAAGTTCTAACCATAGACTCCACTCAACATAAGGAGATCAATGACATTGTGATGCAGGCGCAT
66 TCTAAGTTCTAACCATAGACTCCACTCAACATAAGGAGATCAATGACATTGTGATGCAGGCGCAT
*
25206039 ATGAAAATTTATTTAGTATTTTAGTTAGTTTAGGATTTTATTTTATTTATTTAATTTGAGATTC-
131 ATGAAAATTTATTTAGTATTTTAGTTAATTTAGGATTTTATTTTATTTATTTAATTTGAGATTCT
25206103 TTTTTCCTATCTTTATTAGAATTTTAGTACTTTAAGTCTTTATTTAGGATTAGAATTACTATTTG
196 TTTTTCCTATCTTTATTAGAATTTTAGTACTTTAAGTCTTTATTTAGGATTAGAATTACTATTTG
25206168 AT
261 AT
25206170 TNCAGCCATGCTAATTCTCATGAGAGAAACCTCCGTAACATAGTATTGACCAAACAAGCTTATTA
1 T-CAGCCATGCTAATTCTCATGAGAGAAACCTCCGTAACATAGTATTGACCAAACAAGCTTATTA
25206235 TTCTAAGTTCTAACCATAGACTCCACTCAACATAAGGAGATCAATGACATTGTGATGCAGGCGCA
65 TTCTAAGTTCTAACCATAGACTCCACTCAACATAAGGAGATCAATGACATTGTGATGCAGGCGCA
*
25206300 TATGAAAATTTATTTAGTATTTTAGTTAATTTAGGATTTTATTTTATTTATTTAGTTTGAGATTC
130 TATGAAAATTTATTTAGTATTTTAGTTAATTTAGGATTTTATTTTATTTATTTAATTTGAGATTC
25206365 TTTTTTCCTATCTTTATTAGAATTTTAGTACTTTAAGTCTTTATTTAGGATTAGAATTACTATTT
195 TTTTTTCCTATCTTTATTAGAATTTTAGTACTTTAAGTCTTTATTTAGGATTAGAATTACTATTT
25206430 GAT
260 GAT
25206433 T
1 T
25206434 AGGATTTATC
Statistics
Matches: 260, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
261 1 0.00
262 191 0.73
263 68 0.26
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.41
Consensus pattern (262 bp):
TCAGCCATGCTAATTCTCATGAGAGAAACCTCCGTAACATAGTATTGACCAAACAAGCTTATTAT
TCTAAGTTCTAACCATAGACTCCACTCAACATAAGGAGATCAATGACATTGTGATGCAGGCGCAT
ATGAAAATTTATTTAGTATTTTAGTTAATTTAGGATTTTATTTTATTTATTTAATTTGAGATTCT
TTTTTCCTATCTTTATTAGAATTTTAGTACTTTAAGTCTTTATTTAGGATTAGAATTACTATTTG
AT
Found at i:25206348 original size:17 final size:17
Alignment explanation
Indices: 25206308--25206349 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
25206298 CATATGAAAA
*
25206308 TTTATTTAGTATTTTAG
1 TTTATTTAGGATTTTAG
* *
25206325 TTAATTTAGGATTTTAT
1 TTTATTTAGGATTTTAG
25206342 TTTATTTA
1 TTTATTTA
25206350 TTTAGTTTGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.26, C:0.00, G:0.10, T:0.64
Consensus pattern (17 bp):
TTTATTTAGGATTTTAG
Found at i:25211340 original size:17 final size:16
Alignment explanation
Indices: 25211298--25211340 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
25211288 GCATATGAAA
*
25211298 ATTTATTTAGTATTTT
1 ATTTATTTAGGATTTT
*
25211314 AGTTAGTTTAGGATTTT
1 ATTTA-TTTAGGATTTT
25211331 ATTTTATTTA
1 A-TTTATTTA
25211341 TTTAGTTTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
16 4 0.18
17 15 0.68
18 3 0.14
ACGTcount: A:0.26, C:0.00, G:0.12, T:0.63
Consensus pattern (16 bp):
ATTTATTTAGGATTTT
Found at i:25219519 original size:71 final size:65
Alignment explanation
Indices: 25219396--25219531 Score: 202
Period size: 71 Copynumber: 2.0 Consensus size: 65
25219386 AAAAATCATT
25219396 ATATCAAGATGTTATTAATATTTTTAAAATAAATCTCAATACCCCCAAAAAAT-CCCTTTCTATA
1 ATATCAAGATGTTATTAATATTTTTAAAATAAATCTCAATACCCCCAAAAAATCCCCTTTC-ATA
25219460 C
65 C
25219461 NATATCAAGATGTTATTAAATATTTTTAAAATTAAAATACGTCAATACCCCCAAAAAATCCCCTT
1 -ATATCAAGATGTTATT-AATATTTTTAAAA-T-AAAT-C-TCAATACCCCCAAAAAATCCCCTT
25219526 TCATAC
60 TCATAC
25219532 TAAAACAAGC
Statistics
Matches: 64, Mismatches: 0, Indels: 7
0.90 0.00 0.10
Matches are distributed among these distances:
66 16 0.25
67 13 0.20
68 1 0.02
69 4 0.06
70 1 0.02
71 22 0.34
72 7 0.11
ACGTcount: A:0.42, C:0.20, G:0.04, T:0.34
Consensus pattern (65 bp):
ATATCAAGATGTTATTAATATTTTTAAAATAAATCTCAATACCCCCAAAAAATCCCCTTTCATAC
Found at i:25219667 original size:32 final size:32
Alignment explanation
Indices: 25219625--25219686 Score: 99
Period size: 32 Copynumber: 1.9 Consensus size: 32
25219615 AACCCATAGA
25219625 TTTTAATTTTAAGCCAAATAAG-TATTTATATC
1 TTTTAATTTTAAGCCAAATAAGCT-TTTATATC
*
25219657 TTTTTATTTTAAGCCAAATAAGCTTTTATA
1 TTTTAATTTTAAGCCAAATAAGCTTTTATA
25219687 ACTAATTGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
32 27 0.96
33 1 0.04
ACGTcount: A:0.35, C:0.10, G:0.06, T:0.48
Consensus pattern (32 bp):
TTTTAATTTTAAGCCAAATAAGCTTTTATATC
Found at i:25220612 original size:14 final size:15
Alignment explanation
Indices: 25220593--25220625 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
25220583 GTGATTTTTT
25220593 TTAAAAA-ATAGCTC
1 TTAAAAAGATAGCTC
*
25220607 TTAAAAAGATAGCTT
1 TTAAAAAGATAGCTC
25220622 TTAA
1 TTAA
25220626 TTTTTACAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.48, C:0.09, G:0.09, T:0.33
Consensus pattern (15 bp):
TTAAAAAGATAGCTC
Found at i:25221324 original size:216 final size:218
Alignment explanation
Indices: 25220934--25221386 Score: 648
Period size: 216 Copynumber: 2.1 Consensus size: 218
25220924 AATATACAAA
*
25220934 TTATATATAAATTAAAT-ATATGTATATATAAGATATTACTTTATTATTTATATGAAATTAATGA
1 TTATATATAAATTAAATAATATATATATATAAGATATTACTTTATTATTTATATGAAATTAATGA
*
25220998 CACAACTTATATGTTATAATATTTTAATTTTTACATCAAAGTTTGAAAAAATAATAACTAATTAT
66 CACAACTTATATGTTATAATATTGTAA--TTTACATCAAAGTTTGAAAAAATAATAACTAATTAT
* *
25221063 AAATAATATGCTATAAAAATTAAGGCGATAACTAATAAAATTATTAAGTGTAATCATATAAATAA
129 AAAGAATATGCTATAAAAACTAAGGCGATAACTAATAAAATTATTAAGTGTAATCATATAAATAA
*
25221128 AGTCTATTATAAGTTACAATAATGC
194 AGTCTATTATAACTTACAATAATGC
* * *
25221153 TTATGTATAAATTAAATAAATATATATGTATAATATATTACTTTATTATGTATATATGAAATTAA
1 TTATATATAAATTAAAT-AATATATATATATAAGATATTACTTTATTAT-T-TATATGAAATTAA
* * * *
25221218 TGACACAACTTATATGTTAT-A-A-TGT-A-TTATATCAAAGTTTGTATAAATAATACCTAATTA
63 TGACACAACTTATATGTTATAATATTGTAATTTACATCAAAGTTTGAAAAAATAATAACTAATTA
* * * * *
25221278 TACAGAATATGTTATAAAAACTAAGGTGATAATTAATAAGATTATTAAGTGTAATCATATAAATA
128 TAAAGAATATGCTATAAAAACTAAGGCGATAACTAATAAAATTATTAAGTGTAATCATATAAATA
* *
25221343 AAGTTTATTATAACTTATAATAATGC
193 AAGTCTATTATAACTTACAATAATGC
25221369 TTATATATAAATTAAATA
1 TTATATATAAATTAAATA
25221387 TACGTAATAT
Statistics
Matches: 210, Mismatches: 20, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
215 1 0.00
216 127 0.60
219 17 0.08
220 2 0.01
221 28 0.13
222 2 0.01
223 33 0.16
ACGTcount: A:0.47, C:0.06, G:0.08, T:0.40
Consensus pattern (218 bp):
TTATATATAAATTAAATAATATATATATATAAGATATTACTTTATTATTTATATGAAATTAATGA
CACAACTTATATGTTATAATATTGTAATTTACATCAAAGTTTGAAAAAATAATAACTAATTATAA
AGAATATGCTATAAAAACTAAGGCGATAACTAATAAAATTATTAAGTGTAATCATATAAATAAAG
TCTATTATAACTTACAATAATGC
Found at i:25223249 original size:2 final size:2
Alignment explanation
Indices: 25223242--25223294 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
25223232 ATACATTTTG
25223242 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
25223284 TA TA TA TA TA T
1 TA TA TA TA TA T
25223295 TTNCATTTTC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:25223548 original size:33 final size:36
Alignment explanation
Indices: 25223468--25223560 Score: 111
Period size: 36 Copynumber: 2.7 Consensus size: 36
25223458 TCAACTCAGC
* * *
25223468 TCATGTGCACTCCCACACCGCACATAGCTAATATCC
1 TCATGTGCACTCCCACACCGCACATAGCGAAAATCA
*
25223504 TCATGTGCACTCCCACACCTCACAT-G-GAAAAT-A
1 TCATGTGCACTCCCACACCGCACATAGCGAAAATCA
* *
25223537 TCATGTACACTCCCACATCGCACA
1 TCATGTGCACTCCCACACCGCACA
25223561 CAAAAGGCAC
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
33 21 0.42
34 4 0.08
35 1 0.02
36 24 0.48
ACGTcount: A:0.30, C:0.38, G:0.11, T:0.22
Consensus pattern (36 bp):
TCATGTGCACTCCCACACCGCACATAGCGAAAATCA
Found at i:25224356 original size:20 final size:21
Alignment explanation
Indices: 25224333--25224380 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
25224323 GAAGAAGTAA
*
25224333 GAAAAGAAAGG-AAAGGAAAT
1 GAAAAGAAAGGAAAAGAAAAT
*
25224353 GAAAA-CAAGGAAAAGAAAAT
1 GAAAAGAAAGGAAAAGAAAAT
25224373 G-AAAGAAA
1 GAAAAGAAA
25224381 ATTGATTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.69, C:0.02, G:0.25, T:0.04
Consensus pattern (21 bp):
GAAAAGAAAGGAAAAGAAAAT
Found at i:25227812 original size:168 final size:168
Alignment explanation
Indices: 25227534--25227872 Score: 608
Period size: 168 Copynumber: 2.0 Consensus size: 168
25227524 AAATAACTAT
*
25227534 AAAAATATCTTATTGAGCAAAAAATTATAAAATATCTTAGTTGTTGAGTTGTTAGCATTCATTCA
1 AAAAATATCTTATTGAGCAAAAAACTATAAAATATCTTAGTTGTTGAGTTGTTAGCATTCATTCA
25227599 TAGATCTGTCAAAATTTGTGGTTTAAATTGAACCAAATGGAAACGGATATCCTAAAAAACCT-TT
66 TAGATCTGTCAAAATTTGTGGTTTAAATTGAACCAAATGGAAACGGATATCCTAAAAAACCTCTT
25227663 CGTTTTTTCACTTAAACTTAAATTTTACTTGCCTTAAGG
131 CGTTTTTTCACTTAAACTT-AATTTTACTTGCCTTAAGG
25227702 AAAAATATCTTATTGAGCAAAAAACTATAAAATATCTTAGTTGTTGAGTTGTTAGCATTCATTCA
1 AAAAATATCTTATTGAGCAAAAAACTATAAAATATCTTAGTTGTTGAGTTGTTAGCATTCATTCA
* *
25227767 TAGATCTGTCAGAATTTGTGGTTTAAGTTGAACCAAATGGAAACGGATATCCTAAAAAACCTCTT
66 TAGATCTGTCAAAATTTGTGGTTTAAATTGAACCAAATGGAAACGGATATCCTAAAAAACCTCTT
* * *
25227832 CGTTTTTTCACTTAAACTTAATTTTGCTTTCCTTGAGG
131 CGTTTTTTCACTTAAACTTAATTTTACTTGCCTTAAGG
25227870 AAA
1 AAA
25227873 TATTATTAAT
Statistics
Matches: 164, Mismatches: 6, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
168 143 0.87
169 21 0.13
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (168 bp):
AAAAATATCTTATTGAGCAAAAAACTATAAAATATCTTAGTTGTTGAGTTGTTAGCATTCATTCA
TAGATCTGTCAAAATTTGTGGTTTAAATTGAACCAAATGGAAACGGATATCCTAAAAAACCTCTT
CGTTTTTTCACTTAAACTTAATTTTACTTGCCTTAAGG
Found at i:25231169 original size:10 final size:11
Alignment explanation
Indices: 25231142--25231177 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
25231132 CATGGCCGGC
*
25231142 CAAAGCAAGAA
1 CAAAGGAAGAA
25231153 CAAAGGAAGAA
1 CAAAGGAAGAA
25231164 -AAAGGAAGAA
1 CAAAGGAAGAA
25231174 CAAA
1 CAAA
25231178 ACCCTAGGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 10 0.43
11 13 0.57
ACGTcount: A:0.67, C:0.11, G:0.22, T:0.00
Consensus pattern (11 bp):
CAAAGGAAGAA
Found at i:25238700 original size:15 final size:15
Alignment explanation
Indices: 25238656--25238701 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
25238646 AGATCAGATA
25238656 TTTTG-ATTTTAAAG
1 TTTTGAATTTTAAAG
*
25238670 CTTTGAATTTTAAAG
1 TTTTGAATTTTAAAG
* *
25238685 TTTTTAGTTTTAAAG
1 TTTTGAATTTTAAAG
25238700 TT
1 TT
25238702 GTTTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
14 4 0.15
15 23 0.85
ACGTcount: A:0.28, C:0.02, G:0.13, T:0.57
Consensus pattern (15 bp):
TTTTGAATTTTAAAG
Found at i:25238788 original size:5 final size:5
Alignment explanation
Indices: 25238743--25238787 Score: 65
Period size: 5 Copynumber: 9.0 Consensus size: 5
25238733 CCCCAAGTCC
*
25238743 AGTTA AGTTA A-TATA AGTTA AGTTA AGTTA AGTTA AGTTA GGTTA
1 AGTTA AGTTA AGT-TA AGTTA AGTTA AGTTA AGTTA AGTTA AGTTA
25238788 GATTGAATAG
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
4 1 0.03
5 35 0.95
6 1 0.03
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (5 bp):
AGTTA
Found at i:25239116 original size:24 final size:26
Alignment explanation
Indices: 25239088--25239136 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 26
25239078 AGGAAAGCTT
*
25239088 TGAGAGTAGC-CAGA-ATTTTGAAAG
1 TGAGAGTAGCTCAAATATTTTGAAAG
25239112 TGAGAGTAGCTCAAATATTTTGAAA
1 TGAGAGTAGCTCAAATATTTTGAAA
25239137 ACTGAAATAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 10 0.45
25 3 0.14
26 9 0.41
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (26 bp):
TGAGAGTAGCTCAAATATTTTGAAAG
Found at i:25247614 original size:12 final size:12
Alignment explanation
Indices: 25247599--25247623 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
25247589 TTTTTTTTAT
25247599 TTTTTTTTGAAA
1 TTTTTTTTGAAA
25247611 TTTTTTTTGAAA
1 TTTTTTTTGAAA
25247623 T
1 T
25247624 CAAATATCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (12 bp):
TTTTTTTTGAAA
Found at i:25254804 original size:23 final size:23
Alignment explanation
Indices: 25254778--25254837 Score: 61
Period size: 23 Copynumber: 2.6 Consensus size: 23
25254768 TTTAGTTGCT
25254778 ATAAAAATATAAAAAACAAATAA
1 ATAAAAATATAAAAAACAAATAA
* *
25254801 ATAATAATA-AATAAAATAAATAA
1 ATAAAAATATAA-AAAACAAATAA
*
25254824 ACATAAAAT-TAAAA
1 ATA-AAAATATAAAA
25254838 TAACTACTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
22 2 0.07
23 22 0.73
24 6 0.20
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (23 bp):
ATAAAAATATAAAAAACAAATAA
Found at i:25254809 original size:10 final size:9
Alignment explanation
Indices: 25254795--25254840 Score: 56
Period size: 10 Copynumber: 4.7 Consensus size: 9
25254785 TATAAAAAAC
25254795 AAATAAATA
1 AAATAAATA
25254804 ATAATAAATA
1 A-AATAAATA
25254814 AAATAAATA
1 AAATAAATA
25254823 AACATAAAATTA
1 AA-AT-AAA-TA
25254835 AAATAA
1 AAATAA
25254841 CTACTTAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
9 11 0.33
10 13 0.39
11 5 0.15
12 4 0.12
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (9 bp):
AAATAAATA
Found at i:25254829 original size:19 final size:21
Alignment explanation
Indices: 25254795--25254840 Score: 62
Period size: 19 Copynumber: 2.3 Consensus size: 21
25254785 TATAAAAAAC
25254795 AAATAAATAATAAT-AAA-TA
1 AAATAAATAATAATAAAATTA
25254814 AAATAAATAA-ACATAAAATTA
1 AAATAAATAATA-ATAAAATTA
25254835 AAATAA
1 AAATAA
25254841 CTACTTAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 1 0.04
19 12 0.50
20 3 0.12
21 8 0.33
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (21 bp):
AAATAAATAATAATAAAATTA
Found at i:25255514 original size:2 final size:2
Alignment explanation
Indices: 25255507--25255543 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
25255497 TCGAACTCTT
25255507 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
25255544 TTCTGACCTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:25259578 original size:21 final size:20
Alignment explanation
Indices: 25259552--25259593 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 20
25259542 GTACATGATC
25259552 ATATGTATCGATACATTATGA
1 ATATGTATCGATACATT-TGA
*
25259573 ATATGTATCTATACATTTGA
1 ATATGTATCGATACATTTGA
25259593 A
1 A
25259594 ACATAATGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.38, C:0.10, G:0.12, T:0.40
Consensus pattern (20 bp):
ATATGTATCGATACATTTGA
Found at i:25264168 original size:118 final size:117
Alignment explanation
Indices: 25263960--25264198 Score: 406
Period size: 118 Copynumber: 2.0 Consensus size: 117
25263950 TTTTATTTTG
* * *
25263960 AGATCTTTTTTCAGACACCACCACACCAATGAATGATTTCTCGACCAAATAAGTTTACCACTTGT
1 AGATCTTTTTTCAGACACCACCACACCAATGAAAGATTTCTCGACCAAACAAGTTTACCACTTAT
***
25264025 TCTTCAAGAATTTTTTCAACTTGAACCTTGAGTGGACAAGGTGGGGAATGCT
66 TCTTCAAGAACGCTTTCAACTTGAACCTTGAGTGGACAAGGTGGGGAATGCT
25264077 NAGATCTTTTTTCAGACACCACCACACCAATGAAAGATTTCTCGACCAAACAAGTTTACCACTTA
1 -AGATCTTTTTTCAGACACCACCACACCAATGAAAGATTTCTCGACCAAACAAGTTTACCACTTA
*
25264142 TTCTTCAAGAACGCTTTCAACTTGAACCTTGAGTGGACAAGGTGTGGAATGCT
65 TTCTTCAAGAACGCTTTCAACTTGAACCTTGAGTGGACAAGGTGGGGAATGCT
25264195 AGAT
1 AGAT
25264199 TGCAATATGG
Statistics
Matches: 114, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
117 4 0.04
118 110 0.96
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (117 bp):
AGATCTTTTTTCAGACACCACCACACCAATGAAAGATTTCTCGACCAAACAAGTTTACCACTTAT
TCTTCAAGAACGCTTTCAACTTGAACCTTGAGTGGACAAGGTGGGGAATGCT
Found at i:25264585 original size:17 final size:17
Alignment explanation
Indices: 25264565--25264597 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
25264555 TTCTTGATAA
25264565 AATAA-AACTTCTTATTG
1 AATAATAAC-TCTTATTG
25264582 AATAATAACTCTTATT
1 AATAATAACTCTTATT
25264598 TTATTACTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.80
18 3 0.20
ACGTcount: A:0.42, C:0.12, G:0.03, T:0.42
Consensus pattern (17 bp):
AATAATAACTCTTATTG
Found at i:25264841 original size:59 final size:58
Alignment explanation
Indices: 25264740--25264907 Score: 216
Period size: 59 Copynumber: 2.9 Consensus size: 58
25264730 TTAAGACAAC
* *
25264740 TCTTGTCTTTAATTAAGACAAAAATATTTTATCTTGTCTAAATTGAGACAAATATATTT
1 TCTTGTC-TAAATTAAGACAAAAATATTTTATCTTGTCTAAATTAAGACAAATATATTT
*
25264799 TCTTGTCTAGATTAAGACAAAAAATATTTT-TCTTGTCTTAAATTAAGACAAATATATTT
1 TCTTGTCTAAATTAAGAC-AAAAATATTTTATCTTGTC-TAAATTAAGACAAATATATTT
* * * *
25264858 TCTTGTCTAAATTAAGAC-CAAATATGTTT-TTTTATCTAAATTAATACAAA
1 TCTTGTCTAAATTAAGACAAAAATAT-TTTATCTTGTCTAAATTAAGACAAA
25264908 CATGTTAAAG
Statistics
Matches: 98, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
57 19 0.19
58 24 0.24
59 55 0.56
ACGTcount: A:0.39, C:0.11, G:0.08, T:0.43
Consensus pattern (58 bp):
TCTTGTCTAAATTAAGACAAAAATATTTTATCTTGTCTAAATTAAGACAAATATATTT
Found at i:25264879 original size:29 final size:28
Alignment explanation
Indices: 25264740--25264907 Score: 192
Period size: 29 Copynumber: 5.8 Consensus size: 28
25264730 TTAAGACAAC
* *
25264740 TCTTGTCTTTAATTAAGACAAAAATATTTT
1 TCTTGTC-TAAATTAAGACAAATATA-TTT
*
25264770 ATCTTGTCTAAATTGAGACAAATATATTT
1 -TCTTGTCTAAATTAAGACAAATATATTT
* *
25264799 TCTTGTCTAGATTAAGACAAAAAATATTTT
1 TCTTGTCTAAATTAAGAC-AAATATA-TTT
25264829 TCTTGTCTTAAATTAAGACAAATATATTT
1 TCTTGTC-TAAATTAAGACAAATATATTT
*
25264858 TCTTGTCTAAATTAAGACCAAATATGTTT
1 TCTTGTCTAAATTAAGA-CAAATATATTT
* * *
25264887 TTTTATCTAAATTAATACAAA
1 TCTTGTCTAAATTAAGACAAA
25264908 CATGTTAAAG
Statistics
Matches: 121, Mismatches: 12, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
28 30 0.25
29 43 0.36
30 31 0.26
31 17 0.14
ACGTcount: A:0.39, C:0.11, G:0.08, T:0.43
Consensus pattern (28 bp):
TCTTGTCTAAATTAAGACAAATATATTT
Found at i:25268068 original size:117 final size:117
Alignment explanation
Indices: 25267861--25268095 Score: 407
Period size: 117 Copynumber: 2.0 Consensus size: 117
25267851 GAGGTGCACT
* * *
25267861 CAAATCCTACCTCGGGAGTTATCCTACGTGCCTCTCCAATTGAGGTAAGCTCAATAATTGGGAAC
1 CAAATCCTACCTCGAGAGTTATCCTACGCGCCTCTCCAATCGAGGTAAGCTCAATAATTGGGAAC
*
25267926 CGTGCCCCTCTAATTAGGCTAGCCCACGGAACCCCCGTCACTACAGTGCCCA
66 CGTGCCCCTCTAATTAGGCTAGCCCACAGAACCCCCGTCACTACAGTGCCCA
*
25267978 CAAATCCTACCTCGAGAGTTATTCTACGCGCCTCTCCAATCGAGGTAAGCTCAATAATTGGGAAC
1 CAAATCCTACCTCGAGAGTTATCCTACGCGCCTCTCCAATCGAGGTAAGCTCAATAATTGGGAAC
* *
25268043 CGTGCCCCTCTAATTAGGCTGGCCCACAGAACCCCCGTCACTGCAGTGCCCA
66 CGTGCCCCTCTAATTAGGCTAGCCCACAGAACCCCCGTCACTACAGTGCCCA
25268095 C
1 C
25268096 TTTATAATCC
Statistics
Matches: 111, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
117 111 1.00
ACGTcount: A:0.25, C:0.34, G:0.20, T:0.22
Consensus pattern (117 bp):
CAAATCCTACCTCGAGAGTTATCCTACGCGCCTCTCCAATCGAGGTAAGCTCAATAATTGGGAAC
CGTGCCCCTCTAATTAGGCTAGCCCACAGAACCCCCGTCACTACAGTGCCCA
Found at i:25269548 original size:19 final size:19
Alignment explanation
Indices: 25269524--25269560 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
25269514 CTTCTAAACT
25269524 TCAAATCATACTCCAATAC
1 TCAAATCATACTCCAATAC
25269543 TCAAATCATACTCCAATA
1 TCAAATCATACTCCAATA
25269561 AGTCAAATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.43, C:0.30, G:0.00, T:0.27
Consensus pattern (19 bp):
TCAAATCATACTCCAATAC
Found at i:25271905 original size:20 final size:20
Alignment explanation
Indices: 25271880--25271918 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
25271870 GGAAGAAAAA
25271880 AAGAAAAAGCAAAGAGAAAC
1 AAGAAAAAGCAAAGAGAAAC
**
25271900 AAGAAAATTCAAAGAGAAA
1 AAGAAAAAGCAAAGAGAAA
25271919 TTCGCAGTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.69, C:0.08, G:0.18, T:0.05
Consensus pattern (20 bp):
AAGAAAAAGCAAAGAGAAAC
Found at i:25276887 original size:18 final size:19
Alignment explanation
Indices: 25276860--25276895 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
25276850 ATGATTCGTT
*
25276860 AGAAAGAGGAAAA-AAAAA
1 AGAAAAAGGAAAAGAAAAA
25276878 AGAAAAAGGAAAAGAAAA
1 AGAAAAAGGAAAAGAAAA
25276896 TGTTGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (19 bp):
AGAAAAAGGAAAAGAAAAA
Found at i:25276994 original size:20 final size:20
Alignment explanation
Indices: 25276965--25277002 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
25276955 TGTTTTTTTC
* *
25276965 TCTTTTTAATTTTTTATTAT
1 TCTTTCTAATGTTTTATTAT
25276985 TCTTTCTAATGTTTTATT
1 TCTTTCTAATGTTTTATT
25277003 TCTTTACTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.08, G:0.03, T:0.71
Consensus pattern (20 bp):
TCTTTCTAATGTTTTATTAT
Found at i:25277323 original size:16 final size:16
Alignment explanation
Indices: 25277286--25277315 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
25277276 TGTTTGTTTA
25277286 AATT-TTTATTATTTG
1 AATTCTTTATTATTTG
25277301 AATTCTTTATTATTT
1 AATTCTTTATTATTT
25277316 TTATTCTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.67
Consensus pattern (16 bp):
AATTCTTTATTATTTG
Found at i:25287820 original size:32 final size:32
Alignment explanation
Indices: 25287784--25287848 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
25287774 AATCTGCTTG
*
25287784 AATCCTACTCAATTTAACTTTAAAAGTGATCA
1 AATCCTACTCAATTTAACTTTAAAAGTCATCA
*
25287816 AATCCTACTCAATTTGACTTTAAAAGTCATCA
1 AATCCTACTCAATTTAACTTTAAAAGTCATCA
25287848 A
1 A
25287849 CTTGAACCTG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.40, C:0.20, G:0.06, T:0.34
Consensus pattern (32 bp):
AATCCTACTCAATTTAACTTTAAAAGTCATCA
Found at i:25287879 original size:15 final size:16
Alignment explanation
Indices: 25287848--25287880 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
25287838 AAAGTCATCA
25287848 ACTTGAACCTGAAATG
1 ACTTGAACCTGAAATG
*
25287864 ACTTGCACCT-AAATG
1 ACTTGAACCTGAAATG
25287879 AC
1 AC
25287881 CTAAGCGTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.36, C:0.24, G:0.15, T:0.24
Consensus pattern (16 bp):
ACTTGAACCTGAAATG
Found at i:25289054 original size:16 final size:17
Alignment explanation
Indices: 25289028--25289065 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
25289018 TATCTAAGGA
* *
25289028 AAAATATAAAGTAGAAG
1 AAAATATAAAGAAAAAG
25289045 AAAA-ATAAAGAAAAAG
1 AAAATATAAAGAAAAAG
25289061 AAAAT
1 AAAAT
25289066 GGATGGAAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.74, C:0.00, G:0.13, T:0.13
Consensus pattern (17 bp):
AAAATATAAAGAAAAAG
Found at i:25295359 original size:73 final size:73
Alignment explanation
Indices: 25295240--25295421 Score: 201
Period size: 73 Copynumber: 2.5 Consensus size: 73
25295230 ACAGAATGAT
* * *
25295240 CTTAGTTGACTAAC-TGCGTTCTTAGTCAACTAAGTTGTTTTTGTCTTCTG-A-TCCCAG-TTTC
1 CTTAGTTGACTAACTTAC-TTCTTAGTCGACTAAGTTGTTTATGTC-T-TGAAGT-CCAGATTTC
*
25295301 TGACAGTGAGCA
62 TGACAGTAAGCA
* * *
25295313 CTTAGTTGACTAACTTACTTCTTAGTCGATTAAGTTGTTTATGTCTTGAAGTCTAGATTTCTGGC
1 CTTAGTTGACTAACTTACTTCTTAGTCGACTAAGTTGTTTATGTCTTGAAGTCCAGATTTCTGAC
*
25295378 AGTAAGCT
66 AGTAAGCA
* * *
25295386 CTTAGTCGACTAACTTACTTATTGGTCGACTAAGTT
1 CTTAGTTGACTAACTTACTTCTTAGTCGACTAAGTT
25295422 TCTCTGTCCC
Statistics
Matches: 93, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
71 2 0.02
72 5 0.05
73 84 0.90
74 2 0.02
ACGTcount: A:0.23, C:0.18, G:0.19, T:0.41
Consensus pattern (73 bp):
CTTAGTTGACTAACTTACTTCTTAGTCGACTAAGTTGTTTATGTCTTGAAGTCCAGATTTCTGAC
AGTAAGCA
Found at i:25303334 original size:28 final size:28
Alignment explanation
Indices: 25303260--25303433 Score: 177
Period size: 29 Copynumber: 5.9 Consensus size: 28
25303250 TTAAGACAAC
* * *
25303260 TCTTGTCTGTAATTAAGACAAAAAAATTTTT
1 TCTTGTCT-AAATTAAGAC--AAACATGTTT
*
25303291 ATCTTGTCTAAATTAAGACAAATATGTTT
1 -TCTTGTCTAAATTAAGACAAACATGTTT
* * * *
25303320 TCTTGACTAAGTTAACACAAAAAATAGTTT
1 TCTTGTCTAAATTAAGAC-AAACAT-GTTT
* * *
25303350 TCTTGTCTTAAATTAAGGCAAATATATTT
1 TCTTGTC-TAAATTAAGACAAACATGTTT
25303379 TCTTGTCTAAATTAAGACCAAACATGTTT
1 TCTTGTCTAAATTAAGA-CAAACATGTTT
25303408 TCTTGTCTAAATTAAGACAAACATGT
1 TCTTGTCTAAATTAAGACAAACATGT
25303434 CAAAACTGCT
Statistics
Matches: 122, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
28 33 0.27
29 49 0.40
30 15 0.12
31 17 0.14
32 8 0.07
ACGTcount: A:0.38, C:0.13, G:0.10, T:0.39
Consensus pattern (28 bp):
TCTTGTCTAAATTAAGACAAACATGTTT
Found at i:25303341 original size:59 final size:57
Alignment explanation
Indices: 25303270--25303433 Score: 211
Period size: 59 Copynumber: 2.8 Consensus size: 57
25303260 TCTTGTCTGT
*
25303270 AATTAAGACAAAAAAATTTTTATCTTGTCTAAATTAAGACAAATATGTTTTCTTGACTA
1 AATTAAGAC-AAAAAATGTTT-TCTTGTCTAAATTAAGACAAATATGTTTTCTTGACTA
* * * * *
25303329 AGTTAACACAAAAAATAGTTTTCTTGTCTTAAATTAAGGCAAATATATTTTCTTGTCTA
1 AATTAAGACAAAAAAT-GTTTTCTTGTC-TAAATTAAGACAAATATGTTTTCTTGACTA
* * *
25303388 AATTAAGACCAAACATGTTTTCTTGTCTAAATTAAGACAAACATGT
1 AATTAAGACAAAAAATGTTTTCTTGTCTAAATTAAGACAAATATGT
25303434 CAAAACTGCT
Statistics
Matches: 90, Mismatches: 13, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
57 16 0.18
58 25 0.28
59 49 0.54
ACGTcount: A:0.40, C:0.12, G:0.10, T:0.38
Consensus pattern (57 bp):
AATTAAGACAAAAAATGTTTTCTTGTCTAAATTAAGACAAATATGTTTTCTTGACTA
Found at i:25310759 original size:443 final size:442
Alignment explanation
Indices: 25309929--25310813 Score: 1605
Period size: 443 Copynumber: 2.0 Consensus size: 442
25309919 ATGAAATATT
25309929 CATAACCTCCTCTAGCTTTTACGTTCATTGGTCCACACACATCTGTGTGCACTAAGTCTAGAACG
1 CATAACCTCCTCTAGCTTTTACGTTCATTGGTCCACACACATCTGTGTGCACTAAGTCTAGAACG
*
25309994 TTTGGCATTCTGTTACCTTTTGCCTTAAAAGGCCCTTTAGTCATTTTAGCTTCAATACAAGACTC
66 TTTGGCATTCTGTTACCTTTTGCCTTAAAAGACCCTTTAGTCATTTTAGCTTCAATACAAGACTC
* * *
25310059 ACATACTGGTAAAGGACACTCAACCATGTCTGGTAGAGTACCATCCTTTATAATCTTATTGAGTC
131 ACATACTGGTAAAGGACACTCAACCATGTCTGGTAGAGTACCATCCTTTATAAGCCTATTGAGTA
*
25310124 TATTTTGATTAATATGACCTAAACTCAGATGCCAAAGATAATTTTGATTTATATTAGATTCTTTG
196 TATTTTGATTAATATGACCTAAACTCAGATGCCAAAGATAATTTTGATTTATACTAGATTCTTTG
*
25310189 ACTCTTTCAGTTTCAAATCGTTTTGCTTCTATAGCATTTGTAGAATAAGTCATAGGCTCAAGGAA
261 ACTCTTTCAGTTTCAAATCGTATTGCTTCTATAGCATTTGTAGAATAAGTCATAGGCTCAAGGAA
*
25310254 ATAAAGATTATATTTAACAATTCCAGAACAAATAAAATACTTATTCGAATAAATAATGAGTGTCT
326 ATAAAGATTATATTTAACAATTCCAGAACAAATAAAATACTTATTCAAATAAATAATGAGTGTCT
25310319 CACTAAAATAAACTGAATATCCAGACTTTATTAGACAAAAGA-AAGAAATCAA
391 CACTAAAATAAACTGAATATCCAGACTTTATTAGACAAAAGACAA-AAATCAA
25310371 NCATAACCTCCTCTAGCTTTTACGTTCATTGGTCCACACACATCTGTGTGCACTAAGTCTAGAAC
1 -CATAACCTCCTCTAGCTTTTACGTTCATTGGTCCACACACATCTGTGTGCACTAAGTCTAGAAC
*
25310436 GTTTGGCATTCTGTTACCTTTTGCCTTGAAAGACCCTTTAGTCATTTTAGCTTCAATACAAGACT
65 GTTTGGCATTCTGTTACCTTTTGCCTTAAAAGACCCTTTAGTCATTTTAGCTTCAATACAAGACT
25310501 CACATACTGGTAAAGGACACTCAACCATGTCTGGTAGAGTACCATCCTTTATAAGCCTATTGAGT
130 CACATACTGGTAAAGGACACTCAACCATGTCTGGTAGAGTACCATCCTTTATAAGCCTATTGAGT
* *
25310566 ATATTTTGATTGATATGACCTAAACTCAGATGCTAAAGATAATTTTGATTTATACTAGATTCTTT
195 ATATTTTGATTAATATGACCTAAACTCAGATGCCAAAGATAATTTTGATTTATACTAGATTCTTT
*
25310631 GACTCTTTTAGTTTCAAATCGTATTGCTTCTATAGCATTTGTAGAATAAGTCATAGGCTCAAGGA
260 GACTCTTTCAGTTTCAAATCGTATTGCTTCTATAGCATTTGTAGAATAAGTCATAGGCTCAAGGA
*
25310696 AATAAAGATTATATCTT-ACAATTCCAGAACAAATAAAAT-CTTTATTCAAATAAATAGTGAGTG
325 AATAAAGATTATAT-TTAACAATTCCAGAACAAATAAAATAC-TTATTCAAATAAATAATGAGTG
25310759 TCTCACTAAAATAAACTGAATATCCAGACTTTATTAGACAAAAGACAAAAATCAA
388 TCTCACTAAAATAAACTGAATATCCAGACTTTATTAGACAAAAGACAAAAATCAA
25310814 ATTTCTATAA
Statistics
Matches: 427, Mismatches: 12, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
442 1 0.00
443 422 0.99
444 4 0.01
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.34
Consensus pattern (442 bp):
CATAACCTCCTCTAGCTTTTACGTTCATTGGTCCACACACATCTGTGTGCACTAAGTCTAGAACG
TTTGGCATTCTGTTACCTTTTGCCTTAAAAGACCCTTTAGTCATTTTAGCTTCAATACAAGACTC
ACATACTGGTAAAGGACACTCAACCATGTCTGGTAGAGTACCATCCTTTATAAGCCTATTGAGTA
TATTTTGATTAATATGACCTAAACTCAGATGCCAAAGATAATTTTGATTTATACTAGATTCTTTG
ACTCTTTCAGTTTCAAATCGTATTGCTTCTATAGCATTTGTAGAATAAGTCATAGGCTCAAGGAA
ATAAAGATTATATTTAACAATTCCAGAACAAATAAAATACTTATTCAAATAAATAATGAGTGTCT
CACTAAAATAAACTGAATATCCAGACTTTATTAGACAAAAGACAAAAATCAA
Found at i:25313126 original size:2 final size:2
Alignment explanation
Indices: 25313121--25313150 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
25313111 TATTTAAAAC
25313121 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
25313151 TATTTTTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:25315845 original size:40 final size:39
Alignment explanation
Indices: 25315726--25315848 Score: 200
Period size: 37 Copynumber: 3.2 Consensus size: 39
25315716 ACTCAATGTA
25315726 ATATCATCATCATGTGTGCACTCCCTACTCGCACACTTC
1 ATATCATCATCATGTGTGCACTCCCTACTCGCACACTTC
*
25315765 A-A-CATCATCATGTGTGCACCCCCTACTCGCACAC-TC
1 ATATCATCATCATGTGTGCACTCCCTACTCGCACACTTC
25315801 -TATCATCATCATGTGTGCACTCCCTACTCGCACACTTC
1 ATATCATCATCATGTGTGCACTCCCTACTCGCACACTTC
25315839 AATATCATCA
1 -ATATCATCA
25315849 CACAACATTA
Statistics
Matches: 77, Mismatches: 2, Indels: 9
0.88 0.02 0.10
Matches are distributed among these distances:
36 3 0.04
37 62 0.81
38 3 0.04
39 1 0.01
40 8 0.10
ACGTcount: A:0.25, C:0.37, G:0.10, T:0.28
Consensus pattern (39 bp):
ATATCATCATCATGTGTGCACTCCCTACTCGCACACTTC
Found at i:25323039 original size:35 final size:33
Alignment explanation
Indices: 25323000--25323108 Score: 94
Period size: 35 Copynumber: 3.2 Consensus size: 33
25322990 CCCAAAGTGG
*
25323000 TTTTTCAAAGGTTCAACCACAACTTTTCACAATGA
1 TTTTTCAAAGGTTCAACCACAAC--TACACAATGA
** * * * * *
25323035 TTTTTCACGGGCTCAACCAAAAC-CCAAAATGG
1 TTTTTCAAAGGTTCAACCACAACTACACAATGA
*
25323067 TTTTTCAAAGGTTTAACCACAACCTACAACAATGA
1 TTTTTCAAAGGTTCAACCACAA-CTAC-ACAATGA
25323102 TTTTTCA
1 TTTTTCA
25323109 CGGGATTAAC
Statistics
Matches: 56, Mismatches: 15, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
32 23 0.41
33 1 0.02
34 1 0.02
35 31 0.55
ACGTcount: A:0.35, C:0.24, G:0.10, T:0.31
Consensus pattern (33 bp):
TTTTTCAAAGGTTCAACCACAACTACACAATGA
Found at i:25323057 original size:67 final size:66
Alignment explanation
Indices: 25322957--25323128 Score: 240
Period size: 67 Copynumber: 2.6 Consensus size: 66
25322947 TAGCCAAAAC
*
25322957 CTTTCACAAT-ATTTTT-ACCGGGATCAACTAAAACCCAAAGTGGTTTTTCAAAGGTTCAACCAC
1 CTTTCACAATGATTTTTCA-CGGGATCAACTAAAACCCAAAATGGTTTTTCAAAGGTTCAACCAC
25323020 AA
65 AA
* * *
25323022 CTTTTCACAATGATTTTTCACGGGCTCAACCAAAACCCAAAATGGTTTTTCAAAGGTTTAACCAC
1 C-TTTCACAATGATTTTTCACGGGATCAACTAAAACCCAAAATGGTTTTTCAAAGGTTCAACCAC
25323087 AA
65 AA
* * *
25323089 CCTACAACAATGATTTTTCACGGGATTAACTAAAACCCAA
1 CTTTC-ACAATGATTTTTCACGGGATCAACTAAAACCCAA
25323129 CAACTAACTT
Statistics
Matches: 94, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
65 1 0.01
66 11 0.12
67 81 0.86
68 1 0.01
ACGTcount: A:0.36, C:0.24, G:0.12, T:0.28
Consensus pattern (66 bp):
CTTTCACAATGATTTTTCACGGGATCAACTAAAACCCAAAATGGTTTTTCAAAGGTTCAACCACA
A
Found at i:25323118 original size:35 final size:33
Alignment explanation
Indices: 25323028--25323131 Score: 111
Period size: 32 Copynumber: 3.1 Consensus size: 33
25323018 ACAACTTTTC
* *
25323028 ACAATGATTTTTCACGGGCTCAACCAAAACCCA
1 ACAATGATTTTTCACGGGATTAACCAAAACCCA
* ** * *
25323061 A-AATGGTTTTTCAAAGGTTTAACCACAACCTACA
1 ACAATGATTTTTCACGGGATTAACCAAAACC--CA
*
25323095 ACAATGATTTTTCACGGGATTAACTAAAACCCA
1 ACAATGATTTTTCACGGGATTAACCAAAACCCA
25323128 ACAA
1 ACAA
25323132 CTAACTTTTC
Statistics
Matches: 56, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
32 23 0.41
33 7 0.12
34 3 0.05
35 23 0.41
ACGTcount: A:0.39, C:0.24, G:0.12, T:0.25
Consensus pattern (33 bp):
ACAATGATTTTTCACGGGATTAACCAAAACCCA
Found at i:25339763 original size:45 final size:45
Alignment explanation
Indices: 25339671--25339764 Score: 109
Period size: 45 Copynumber: 2.1 Consensus size: 45
25339661 GTTACGCGTT
* * * *
25339671 ATGTACAAAAATATATTACACGCCATAGTTAGGTTGTGACGCACC
1 ATGTACAAAAACAAATGACACGCCATAGTTAGGTTGTGACACACC
* * *
25339716 ATGTACAAAAACAAATGACACGCTAT-GATTAGGTTGTTACACGCC
1 ATGTACAAAAACAAATGACACGCCATAG-TTAGGTTGTGACACACC
25339761 ATGT
1 ATGT
25339765 TGAAAAAAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
44 1 0.02
45 40 0.98
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (45 bp):
ATGTACAAAAACAAATGACACGCCATAGTTAGGTTGTGACACACC
Found at i:25339831 original size:21 final size:21
Alignment explanation
Indices: 25339805--25339855 Score: 102
Period size: 21 Copynumber: 2.4 Consensus size: 21
25339795 TGCAAAAACA
25339805 TGTTACACGCCATTATTAGGT
1 TGTTACACGCCATTATTAGGT
25339826 TGTTACACGCCATTATTAGGT
1 TGTTACACGCCATTATTAGGT
25339847 TGTTACACG
1 TGTTACACG
25339856 TCATGTTGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.37
Consensus pattern (21 bp):
TGTTACACGCCATTATTAGGT
Found at i:25339834 original size:97 final size:97
Alignment explanation
Indices: 25339733--25339914 Score: 319
Period size: 97 Copynumber: 1.9 Consensus size: 97
25339723 AAAACAAATG
* *
25339733 ACACGCTATGATTAGGTTGTTACACGCCATGTTGAAAAAAAATACTATTGTTACATGCCATGTGC
1 ACACGCCATGATTAGGTTGTTACACGCCATGTTGAAAAAAAATACTATTGTTACATGCCATGTAC
25339798 AAAAACATGTTACACGCCATTATTAGGTTGTT
66 AAAAACATGTTACACGCCATTATTAGGTTGTT
* * *
25339830 ACACGCCATTATTAGGTTGTTACACGTCATGTTGAAAAAAAATACTGTTGTTACATGCCATGTAC
1 ACACGCCATGATTAGGTTGTTACACGCCATGTTGAAAAAAAATACTATTGTTACATGCCATGTAC
25339895 AAAAACATGTTACACGCCAT
66 AAAAACATGTTACACGCCAT
25339915 GGTTAAAAAA
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
97 80 1.00
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (97 bp):
ACACGCCATGATTAGGTTGTTACACGCCATGTTGAAAAAAAATACTATTGTTACATGCCATGTAC
AAAAACATGTTACACGCCATTATTAGGTTGTT
Found at i:25339931 original size:26 final size:25
Alignment explanation
Indices: 25339876--25339951 Score: 82
Period size: 26 Copynumber: 3.0 Consensus size: 25
25339866 AAAAAATACT
* *
25339876 GTTGTTACATGCCATG-TACAAAAA
1 GTTGTTACACGCCATGTTAAAAAAA
**
25339900 CATGTTACACGCCATGGTTAAAAAAA
1 GTTGTTACACGCCAT-GTTAAAAAAA
*
25339926 GTTGTTACACGTCATGTTGAAAAAAA
1 GTTGTTACACGCCATGTT-AAAAAAA
25339952 AACATTGTTG
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
24 12 0.29
25 4 0.10
26 26 0.62
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (25 bp):
GTTGTTACACGCCATGTTAAAAAAA
Found at i:25342374 original size:16 final size:17
Alignment explanation
Indices: 25342349--25342382 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
25342339 GCACCTATGT
*
25342349 TATGTTGATATAT-ATA
1 TATGTAGATATATGATA
25342365 TATGTAGATATATGATA
1 TATGTAGATATATGATA
25342382 T
1 T
25342383 GTATTGATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.47
Consensus pattern (17 bp):
TATGTAGATATATGATA
Found at i:25353473 original size:21 final size:21
Alignment explanation
Indices: 25353449--25353505 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
25353439 GTTCATGCAA
25353449 TTCATGACAAAGACTGATGCC
1 TTCATGACAAAGACTGATGCC
* *
25353470 TTCATGACAAAGACAGATGCT
1 TTCATGACAAAGACTGATGCC
25353491 TTCATGACAAAGACT
1 TTCATGACAAAGACT
25353506 AATACCATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.37, C:0.21, G:0.18, T:0.25
Consensus pattern (21 bp):
TTCATGACAAAGACTGATGCC
Found at i:25373180 original size:13 final size:13
Alignment explanation
Indices: 25373162--25373186 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25373152 GAATCAATTT
25373162 AGTCAACTAAGTC
1 AGTCAACTAAGTC
25373175 AGTCAACTAAGT
1 AGTCAACTAAGT
25373187 ACTCTCTGCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.20, G:0.16, T:0.24
Consensus pattern (13 bp):
AGTCAACTAAGTC
Found at i:25377872 original size:149 final size:141
Alignment explanation
Indices: 25377458--25377881 Score: 436
Period size: 144 Copynumber: 2.9 Consensus size: 141
25377448 GATTTGTACT
* * * * *
25377458 TTAGTTTATTTATCATTCTTTCATTGTTAGCGTA-ACTGTTCTATATTTTTGTCTATTTATTACC
1 TTAGTTTATTTATCTTTCTTTCTTTGTTAGCGTATA-TGTCCTATGTTTTTGTCTATTTATGA--
* * * *
25377522 TTTCCTTTTATTTCATTCTTTGGGGATTTCATTTATTCAATTTTAAATGTTTTAAAAATGGCATT
63 -TTCCTTTTATTTGACTGTTTGGGGATTTCATTTATTCAATTTTAAATGTTTTAAAAATGGTATT
*
25377587 TTGCTAATTCTTAGT
127 TTGCTAATTCTTAGA
* * * * * * *
25377602 TTAGTTTATTTATCTATCTTTCTTTGTTAGCATATCTGTCTTATGTTGTTGGCTATTTATTATGT
1 TTAGTTTATTTATCTTTCTTTCTTTGTTAGCGTATATGTCCTATGTTTTTGTCTA--T-TTATGA
* * *
25377667 TTCCTTTTATTTGAGTGTTAGGGGATTTCATTTATTCAATTTTAAATATTTTAAAAATGGTATTT
63 TTCCTTTTATTTGACTGTTTGGGGATTTCATTTATTCAATTTTAAATGTTTTAAAAATGGTATTT
* *
25377732 TGCTGATTGTTAGA
128 TGCTAATTCTTAGA
*
25377746 TTAGTTTATTTATCTTTCTTTCTTTCTTTCTTTGTTTGCGTATATGTCCTATGTTTTTGTCTATT
1 TTAGTTTATTTA--------TCTTTCTTTCTTTGTTAGCGTATATGTCCTATGTTTTTGTCTATT
* * ** * * *
25377811 TATGATTCCATTTATTTGACTGTTTGGAGATAACATTTATTCAATCTTAAATGTTTAAAAAATAG
58 TATGATTCCTTTTATTTGACTGTTTGGGGATTTCATTTATTCAATTTTAAATGTTTTAAAAATGG
25377876 TATTTT
123 TATTTT
25377882 CCATGAAATG
Statistics
Matches: 229, Mismatches: 39, Indels: 19
0.80 0.14 0.07
Matches are distributed among these distances:
144 126 0.55
146 1 0.00
147 4 0.02
149 61 0.27
150 1 0.00
152 36 0.16
ACGTcount: A:0.22, C:0.11, G:0.12, T:0.55
Consensus pattern (141 bp):
TTAGTTTATTTATCTTTCTTTCTTTGTTAGCGTATATGTCCTATGTTTTTGTCTATTTATGATTC
CTTTTATTTGACTGTTTGGGGATTTCATTTATTCAATTTTAAATGTTTTAAAAATGGTATTTTGC
TAATTCTTAGA
Found at i:25393094 original size:42 final size:42
Alignment explanation
Indices: 25392953--25393104 Score: 153
Period size: 42 Copynumber: 3.6 Consensus size: 42
25392943 GTAATGATAT
* *
25392953 TGACCCGGCTATATG-AGAGTAGGAGTGCGCATAAGTCGATGC
1 TGACCCAGCTATGTGCA-AGTAGGAGTGCGCATAAGTCGATGC
* * ** * * *
25392995 TGACCTAGCTATGTGCGAGGGGGAGTGTGCATATGTCGATAC
1 TGACCCAGCTATGTGCAAGTAGGAGTGCGCATAAGTCGATGC
* * *
25393037 TGACTCAGCTATGTGCAAGTAGGAGTGCACATAAGCCGATGC
1 TGACCCAGCTATGTGCAAGTAGGAGTGCGCATAAGTCGATGC
* * *
25393079 TGACCCAGCCATGTGCTAGTGGGAGT
1 TGACCCAGCTATGTGCAAGTAGGAGT
25393105 ACATATGAGG
Statistics
Matches: 86, Mismatches: 23, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
42 86 1.00
ACGTcount: A:0.24, C:0.20, G:0.33, T:0.23
Consensus pattern (42 bp):
TGACCCAGCTATGTGCAAGTAGGAGTGCGCATAAGTCGATGC
Found at i:25403927 original size:18 final size:18
Alignment explanation
Indices: 25403894--25403933 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
25403884 AGTTTCACAA
**
25403894 ATAATTCATACGTAACAC
1 ATAATTCATAAATAACAC
*
25403912 ATAATTCATAAATAACTC
1 ATAATTCATAAATAACAC
25403930 ATAA
1 ATAA
25403934 ATTAATTATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.50, C:0.17, G:0.03, T:0.30
Consensus pattern (18 bp):
ATAATTCATAAATAACAC
Found at i:25408154 original size:13 final size:13
Alignment explanation
Indices: 25408136--25408160 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25408126 AGAGAAATTG
25408136 TGATTTTATAAAA
1 TGATTTTATAAAA
25408149 TGATTTTATAAA
1 TGATTTTATAAA
25408161 TTTTCTGGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:25411946 original size:12 final size:11
Alignment explanation
Indices: 25411931--25411969 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 11
25411921 AAAAAGAATG
25411931 ATAAAAAATAAA
1 ATAAAAAA-AAA
25411943 ATAAAAAACAAA
1 ATAAAAAA-AAA
*
25411955 ATAGAAAAAAA
1 ATAAAAAAAAA
25411966 ATAA
1 ATAA
25411970 TACCTGAATG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
11 6 0.25
12 18 0.75
ACGTcount: A:0.82, C:0.03, G:0.03, T:0.13
Consensus pattern (11 bp):
ATAAAAAAAAA
Found at i:25412179 original size:149 final size:147
Alignment explanation
Indices: 25412011--25412301 Score: 537
Period size: 149 Copynumber: 2.0 Consensus size: 147
25412001 CGTTCCTCTT
25412011 AATTTTTGCAAGAACAAAAAAAACCCTAATTTGCAGAAAGGGAGAGAGAAGAGGGAGATCAATAG
1 AATTTTTGCAAGAACAAAAAAAACCCTAATTTGCAGAAAGGGAGAGAGAAGAGGGAGATCAATAG
25412076 GGAGAGAGGAGAGGATCTTTTTGGGAAGAAATAATTCTCCTAATAAGCTGGCGTGTTTTAAAAAA
66 GGAGAGAGGAGAGGATCTTTTTGGGAAGAAATAATTCTCCTAATAAGCTGGCGTGTTTTAAAAAA
25412141 AAAAAAGGAAGAGGAAAA
131 AAAAAA-GAAGAGGAAAA
* *
25412159 AANTTTTTGCAAGAACAAAAAAACCCCTAATTTGCAGAAAGGGAGAGAGGAGAGGGAGATCAATA
1 AA-TTTTTGCAAGAACAAAAAAAACCCTAATTTGCAGAAAGGGAGAGAGAAGAGGGAGATCAATA
*
25412224 GGGAGAGAGGAGAGGATCTTTTTGGGAAGAAATAATTCTCCTAATAAGCTGGCGTGTTTTTAAAA
65 GGGAGAGAGGAGAGGATCTTTTTGGGAAGAAATAATTCTCCTAATAAGCTGGCGTGTTTTAAAAA
25412289 AAAAAAAGAAGAG
130 AAAAAAAGAAGAG
25412302 AAAGCTCCTA
Statistics
Matches: 139, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
148 8 0.06
149 131 0.94
ACGTcount: A:0.44, C:0.09, G:0.26, T:0.20
Consensus pattern (147 bp):
AATTTTTGCAAGAACAAAAAAAACCCTAATTTGCAGAAAGGGAGAGAGAAGAGGGAGATCAATAG
GGAGAGAGGAGAGGATCTTTTTGGGAAGAAATAATTCTCCTAATAAGCTGGCGTGTTTTAAAAAA
AAAAAAGAAGAGGAAAA
Found at i:25416576 original size:4 final size:4
Alignment explanation
Indices: 25416567--25416607 Score: 55
Period size: 4 Copynumber: 10.2 Consensus size: 4
25416557 ATTCACACAA
* * *
25416567 ATAT ATAT ATAT ATAT ATAT ATAC ATAT ATAC ATAT TTAT A
1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT A
25416608 CACACACACA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (4 bp):
ATAT
Found at i:25416578 original size:6 final size:6
Alignment explanation
Indices: 25416567--25416607 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
25416557 ATTCACACAA
* * *
25416567 ATATAT ATATAT ATATAT ATATAC ATATAT ACATAT TTATA
1 ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT ATATA
25416608 CACACACACA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (6 bp):
ATATAT
Found at i:25416612 original size:2 final size:2
Alignment explanation
Indices: 25416607--25416637 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
25416597 ACATATTTAT
25416607 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
25416638 TGTACACCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:25418734 original size:38 final size:36
Alignment explanation
Indices: 25418692--25418780 Score: 85
Period size: 37 Copynumber: 2.4 Consensus size: 36
25418682 TTATTTCTCG
25418692 TTTTTCATCAAAAAAATATTTTAATAGT-AGAAAAA-TA
1 TTTTTC-TCAAAAAAA-ATTTTAAT-GTAAGAAAAACTA
*
25418729 TTTTT-TCTAAAACTACAATTTTAATGTAAGAAAAACTA
1 TTTTTCTC-AAAA--AAAATTTTAATGTAAGAAAAACTA
25418767 TTTTTCTTCAAAAA
1 TTTTTC-TCAAAAA
25418781 CATTTAATAC
Statistics
Matches: 44, Mismatches: 1, Indels: 14
0.75 0.02 0.24
Matches are distributed among these distances:
35 2 0.05
36 6 0.14
37 21 0.48
38 9 0.20
39 4 0.09
40 2 0.05
ACGTcount: A:0.46, C:0.09, G:0.04, T:0.40
Consensus pattern (36 bp):
TTTTTCTCAAAAAAAATTTTAATGTAAGAAAAACTA
Found at i:25420178 original size:29 final size:29
Alignment explanation
Indices: 25420089--25420179 Score: 137
Period size: 29 Copynumber: 3.1 Consensus size: 29
25420079 TGAGGCAAAT
* * *
25420089 ATGTTTTCTTTTCTAGATTAAAACAAAAC
1 ATGTTTTCTTATCTAAATTAAGACAAAAC
* *
25420118 ATATTTTCTTATCTATATTAAGACAAAAC
1 ATGTTTTCTTATCTAAATTAAGACAAAAC
25420147 ATGTTTTCTTATCTAAATTAAGACAAAAC
1 ATGTTTTCTTATCTAAATTAAGACAAAAC
25420176 ATGT
1 ATGT
25420180 ATTTTTTTAA
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 56 1.00
ACGTcount: A:0.40, C:0.13, G:0.07, T:0.41
Consensus pattern (29 bp):
ATGTTTTCTTATCTAAATTAAGACAAAAC
Found at i:25422322 original size:17 final size:17
Alignment explanation
Indices: 25422292--25422324 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
25422282 TTCTTGATAA
25422292 AATAAAACTCCTTATTG
1 AATAAAACTCCTTATTG
25422309 AATAATAACT-CTTATT
1 AATAA-AACTCCTTATT
25422325 TATTATTATC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.39
Consensus pattern (17 bp):
AATAAAACTCCTTATTG
Found at i:25427360 original size:18 final size:17
Alignment explanation
Indices: 25427338--25427391 Score: 63
Period size: 18 Copynumber: 3.1 Consensus size: 17
25427328 TAGGCACAGA
*
25427338 ATTTTTTTATTTTCCAG
1 ATTTTTTTTTTTTCCAG
* *
25427355 ATTTTTCCTTTTTTCAAG
1 ATTTTT-TTTTTTTCCAG
25427373 ATTTTTTCTTTTTTCCAG
1 ATTTTTT-TTTTTTCCAG
25427391 A
1 A
25427392 ATCTTCCCAC
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
17 6 0.20
18 24 0.80
ACGTcount: A:0.17, C:0.15, G:0.06, T:0.63
Consensus pattern (17 bp):
ATTTTTTTTTTTTCCAG
Found at i:25428531 original size:29 final size:29
Alignment explanation
Indices: 25428488--25428608 Score: 190
Period size: 29 Copynumber: 4.1 Consensus size: 29
25428478 ATCATCAAGC
25428488 TAAGACAAAACATGTTTTCTTGTCTTAAAT
1 TAAGACAAAACATGTTTTCTTGTC-TAAAT
*
25428518 TAAGA-TAAACATGTTTTCTTGTCTAAAT
1 TAAGACAAAACATGTTTTCTTGTCTAAAT
25428546 TAAGACAAAACATGTTTTCTTGTCTAAAT
1 TAAGACAAAACATGTTTTCTTGTCTAAAT
* *
25428575 TAAGACAAAACATATTTTTTTTGTCTAAAT
1 TAAGACAAAACAT-GTTTTCTTGTCTAAAT
25428605 TAAG
1 TAAG
25428609 TGTTTGTTAA
Statistics
Matches: 85, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
28 10 0.12
29 52 0.61
30 23 0.27
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.40
Consensus pattern (29 bp):
TAAGACAAAACATGTTTTCTTGTCTAAAT
Found at i:25432095 original size:14 final size:16
Alignment explanation
Indices: 25432076--25432107 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
25432066 TGTTGTTTGT
25432076 ATGCCT-AGCT-GAGA
1 ATGCCTAAGCTAGAGA
25432090 ATGCCTAAGCTAGAGA
1 ATGCCTAAGCTAGAGA
25432106 AT
1 AT
25432108 TAATATGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 4 0.25
16 6 0.38
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.22
Consensus pattern (16 bp):
ATGCCTAAGCTAGAGA
Found at i:25437132 original size:1 final size:1
Alignment explanation
Indices: 25437128--25437196 Score: 138
Period size: 1 Copynumber: 69.0 Consensus size: 1
25437118 TTATTATTTA
25437128 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
25437193 TTTT
1 TTTT
25437197 ATATATATAT
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 68 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:25437322 original size:2 final size:2
Alignment explanation
Indices: 25437315--25437349 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
25437305 TTTTGTGTTT
25437315 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
25437350 TATACACATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:25439979 original size:38 final size:38
Alignment explanation
Indices: 25439928--25440003 Score: 116
Period size: 38 Copynumber: 2.0 Consensus size: 38
25439918 CACACTCAGC
25439928 TCATGTGCACTCCCTACACGCACAAGGCAATATCATCA
1 TCATGTGCACTCCCTACACGCACAAGGCAATATCATCA
* ***
25439966 TCATGTGCACTCCCTACTCGCACATTTCAATATCATCA
1 TCATGTGCACTCCCTACACGCACAAGGCAATATCATCA
25440004 CACACACTCC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.29, C:0.34, G:0.11, T:0.26
Consensus pattern (38 bp):
TCATGTGCACTCCCTACACGCACAAGGCAATATCATCA
Found at i:25444485 original size:42 final size:42
Alignment explanation
Indices: 25444321--25444486 Score: 235
Period size: 42 Copynumber: 4.0 Consensus size: 42
25444311 ATCTCATATG
* * *
25444321 CAACGGCTTATGCGCACTCCCACTCGCACATAG-CTAGGTCAG
1 CAACGGCTTATGTGCACTCCCACTCGCACATAGTC-GGGTCAA
* *
25444363 CAACGGCTTATGTGTATTCCCACTCGCACATAGTCGGGTCAA
1 CAACGGCTTATGTGCACTCCCACTCGCACATAGTCGGGTCAA
* *
25444405 CAACGGCTTATGTGCATTCCCACTCGCACATAGCCGGGTCAA
1 CAACGGCTTATGTGCACTCCCACTCGCACATAGTCGGGTCAA
* *
25444447 CAACAGCTTATGTGCACTCCTACTCGCACATAGTCGGGTC
1 CAACGGCTTATGTGCACTCCCACTCGCACATAGTCGGGTC
25444487 CACATCAACA
Statistics
Matches: 112, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
42 111 0.99
43 1 0.01
ACGTcount: A:0.23, C:0.33, G:0.21, T:0.23
Consensus pattern (42 bp):
CAACGGCTTATGTGCACTCCCACTCGCACATAGTCGGGTCAA
Found at i:25448960 original size:16 final size:16
Alignment explanation
Indices: 25448939--25448969 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
25448929 CTAATGTTAG
*
25448939 TAATATCTATTTTTGC
1 TAATATATATTTTTGC
25448955 TAATATATATTTTTG
1 TAATATATATTTTTG
25448970 TTAGTAATGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.58
Consensus pattern (16 bp):
TAATATATATTTTTGC
Found at i:25457590 original size:24 final size:25
Alignment explanation
Indices: 25457553--25457649 Score: 92
Period size: 30 Copynumber: 3.7 Consensus size: 25
25457543 TAAAAATATA
25457553 AAAATA-AAAT-TAAAAATTAAAAT
1 AAAATATAAATATAAAAATTAAAAT
25457576 AAAATA-AAATATAAAAAATTAAAATTT
1 AAAATATAAATAT-AAAAATTAAAA--T
* *
25457603 ATATAATATTAATAAAAGAAATTAAAAT
1 A-A-AATATAAATATAA-AAATTAAAAT
25457631 AAAATATATAATATAAAAA
1 AAAATATA-AATATAAAAA
25457650 ATTATATTAA
Statistics
Matches: 61, Mismatches: 4, Indels: 15
0.76 0.05 0.19
Matches are distributed among these distances:
23 10 0.16
24 1 0.02
25 11 0.18
26 8 0.13
27 9 0.15
28 3 0.05
29 6 0.10
30 13 0.21
ACGTcount: A:0.70, C:0.00, G:0.01, T:0.29
Consensus pattern (25 bp):
AAAATATAAATATAAAAATTAAAAT
Found at i:25457592 original size:18 final size:18
Alignment explanation
Indices: 25457538--25457592 Score: 76
Period size: 18 Copynumber: 3.0 Consensus size: 18
25457528 ATATTATAAT
25457538 TAAAATAAAAATATAAAAA
1 TAAAAT-AAAATATAAAAA
*
25457557 TAAAATTAAAA-ATTAAAA
1 TAAAA-TAAAATATAAAAA
25457575 TAAAATAAAATATAAAAA
1 TAAAATAAAATATAAAAA
25457593 ATTAAAATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
17 5 0.16
18 17 0.53
19 9 0.28
20 1 0.03
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (18 bp):
TAAAATAAAATATAAAAA
Found at i:25457594 original size:32 final size:32
Alignment explanation
Indices: 25457536--25457650 Score: 91
Period size: 31 Copynumber: 3.7 Consensus size: 32
25457526 TAATATTATA
*
25457536 ATTAAAATAAAAATATAAAAATAAAATTAAAA
1 ATTAAAATAAAAATATAAAAAAAAAATTAAAA
25457568 ATTAAAAT-AAAATA-AAATATAAAAAATT-AAA
1 ATTAAAATAAAAATATAAA-A-AAAAAATTAAAA
* * * *
25457599 ATTTATAT-AATAT-TAATAAAAGAAATT-AAA
1 ATTAAAATAAAAATATAA-AAAAAAAATTAAAA
*
25457629 A-TAAAATATATAATATAAAAAA
1 ATTAAAATA-AAAATATAAAAAA
25457651 TTATATTAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 15
0.74 0.10 0.16
Matches are distributed among these distances:
29 4 0.06
30 14 0.21
31 30 0.45
32 19 0.28
ACGTcount: A:0.70, C:0.00, G:0.01, T:0.29
Consensus pattern (32 bp):
ATTAAAATAAAAATATAAAAAAAAAATTAAAA
Found at i:25457601 original size:6 final size:6
Alignment explanation
Indices: 25457530--25457601 Score: 58
Period size: 6 Copynumber: 11.5 Consensus size: 6
25457520 ATTTTATAAT
* * *
25457530 ATTATA ATTAAA ATAAAA ATATAAA AATAAA ATTAAAA ATTAAA A-TAAA
1 ATTAAA ATTAAA ATTAAA AT-TAAA ATTAAA ATT-AAA ATTAAA ATTAAA
25457579 A-TAAA ATATAAAAA ATTAAA ATT
1 ATTAAA AT-T--AAA ATTAAA ATT
25457602 TATATAATAT
Statistics
Matches: 55, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
5 10 0.18
6 28 0.51
7 11 0.20
8 1 0.02
9 5 0.09
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (6 bp):
ATTAAA
Found at i:25460319 original size:2 final size:2
Alignment explanation
Indices: 25460312--25460338 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
25460302 CAGATAATGA
25460312 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
25460339 TGGAAAGGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:25469608 original size:45 final size:45
Alignment explanation
Indices: 25469548--25469641 Score: 116
Period size: 45 Copynumber: 2.1 Consensus size: 45
25469538 AATATATTAA
* * **
25469548 TATTATTTCACTATAATAAATATCATAAAGCATATTACTTAATAT
1 TATTATTTCAATATAATAAATATAATAAAAAATATTACTTAATAT
* * * *
25469593 TATTATTTGAATATAATAAATGTAATAAAAAATATTATTTAGTAT
1 TATTATTTCAATATAATAAATATAATAAAAAATATTACTTAATAT
25469638 TATT
1 TATT
25469642 TAAATTTAAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.46, C:0.05, G:0.04, T:0.45
Consensus pattern (45 bp):
TATTATTTCAATATAATAAATATAATAAAAAATATTACTTAATAT
Found at i:25469808 original size:22 final size:22
Alignment explanation
Indices: 25469743--25469810 Score: 61
Period size: 22 Copynumber: 3.1 Consensus size: 22
25469733 NNNNNNNNAC
* *
25469743 AAAA-ATTATTAAATTATAATA
1 AAAATATTATTTAATTATAGTA
* *
25469764 AAAATATGT-TTGT-ATTTTGGTA
1 AAAATAT-TATT-TAATTATAGTA
25469786 AAAATATTATTTAATTATAGTA
1 AAAATATTATTTAATTATAGTA
25469808 AAA
1 AAA
25469811 GTTATTTTGA
Statistics
Matches: 36, Mismatches: 6, Indels: 9
0.71 0.12 0.18
Matches are distributed among these distances:
21 6 0.17
22 29 0.81
23 1 0.03
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (22 bp):
AAAATATTATTTAATTATAGTA
Found at i:25477592 original size:19 final size:20
Alignment explanation
Indices: 25477568--25477607 Score: 73
Period size: 19 Copynumber: 2.0 Consensus size: 20
25477558 CCATTTGACT
25477568 TATTGGAGTATGATTT-AAG
1 TATTGGAGTATGATTTGAAG
25477587 TATTGGAGTATGATTTGAAG
1 TATTGGAGTATGATTTGAAG
25477607 T
1 T
25477608 TTAGAAGTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.30, C:0.00, G:0.28, T:0.42
Consensus pattern (20 bp):
TATTGGAGTATGATTTGAAG
Found at i:25488656 original size:35 final size:35
Alignment explanation
Indices: 25488617--25488690 Score: 103
Period size: 35 Copynumber: 2.1 Consensus size: 35
25488607 AACCATTAAG
*
25488617 AGTGAAGTACCACTTTAAGCAAAACAACTAAAATA
1 AGTGAAGTACAACTTTAAGCAAAACAACTAAAATA
* * * *
25488652 AGTGAAGTACAACTTTACGCGAAACAATTAGAATA
1 AGTGAAGTACAACTTTAAGCAAAACAACTAAAATA
25488687 AGTG
1 AGTG
25488691 GAGTGCTATT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.47, C:0.15, G:0.16, T:0.22
Consensus pattern (35 bp):
AGTGAAGTACAACTTTAAGCAAAACAACTAAAATA
Found at i:25489019 original size:29 final size:30
Alignment explanation
Indices: 25488915--25489020 Score: 94
Period size: 29 Copynumber: 3.7 Consensus size: 30
25488905 TCTTACCTTA
* *
25488915 TTCTCATGTAT-TTGTTCACATACACCTTC
1 TTCTCTTGTATCTTGTTCACATACAACTTC
* ** *
25488944 TTTTCTTGTA-CTTGTTCATGTATAACTTC
1 TTCTCTTGTATCTTGTTCACATACAACTTC
* * *
25488973 TTCTCTTATA-CCTATTCACATACAACTTC
1 TTCTCTTGTATCTTGTTCACATACAACTTC
*
25489002 TGCTCTTGTATCTT-TTCAC
1 TTCTCTTGTATCTTGTTCAC
25489021 GTATATCTCT
Statistics
Matches: 59, Mismatches: 16, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
29 57 0.97
30 2 0.03
ACGTcount: A:0.20, C:0.25, G:0.07, T:0.48
Consensus pattern (30 bp):
TTCTCTTGTATCTTGTTCACATACAACTTC
Found at i:25489304 original size:13 final size:13
Alignment explanation
Indices: 25489288--25489322 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
25489278 CCTCTAGAGC
25489288 TTCTCTCTCTAAA
1 TTCTCTCTCTAAA
25489301 TTCTCTCTCT-AA
1 TTCTCTCTCTAAA
25489313 TTCTCT-TCTA
1 TTCTCTCTCTA
25489323 TTTCATAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 3 0.14
12 8 0.38
13 10 0.48
ACGTcount: A:0.17, C:0.31, G:0.00, T:0.51
Consensus pattern (13 bp):
TTCTCTCTCTAAA
Found at i:25496079 original size:2 final size:2
Alignment explanation
Indices: 25496072--25496146 Score: 59
Period size: 2 Copynumber: 38.5 Consensus size: 2
25496062 TTCTTTCCCC
** *
25496072 CT CT CT CT CT CT CT CT CT CT CT CT CT CT -T NAA CT ACT -T CT TT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT -CT CT -CT CT CT CT
* *
25496114 CC CT -T CC CT C- CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
25496147 ATGTACTGTA
Statistics
Matches: 58, Mismatches: 9, Indels: 12
0.73 0.11 0.15
Matches are distributed among these distances:
1 4 0.07
2 52 0.90
3 2 0.03
ACGTcount: A:0.04, C:0.48, G:0.00, T:0.47
Consensus pattern (2 bp):
CT
Found at i:25496281 original size:6 final size:6
Alignment explanation
Indices: 25496242--25496289 Score: 53
Period size: 6 Copynumber: 7.8 Consensus size: 6
25496232 CGCTTCTTCA
* *
25496242 TTTCTC TTTCCTC ATTTCTC TCTCTC TCTCTC TTTCTC TTTC-C TTTCT
1 TTTCTC TTT-CTC -TTTCTC TTTCTC TTTCTC TTTCTC TTTCTC TTTCT
25496290 TCTAATATGG
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
5 5 0.14
6 23 0.62
7 6 0.16
8 3 0.08
ACGTcount: A:0.02, C:0.38, G:0.00, T:0.60
Consensus pattern (6 bp):
TTTCTC
Found at i:25507088 original size:103 final size:103
Alignment explanation
Indices: 25506904--25507101 Score: 290
Period size: 103 Copynumber: 1.9 Consensus size: 103
25506894 ACCGACAGCC
* * *
25506904 AACCCCCTTGGCACCGATCAGGTGCCTCCGCTCTCTTCCCTGCACCAGATTTGGTGGTGCGACGG
1 AACCCCCTTGACACCGATCAGGTGCCTCCGCTCTCTTCCCTGCACCAGATCTAGTGGTGCGACGG
* *
25506969 TCGGGCTTCCTTTCTCTCACTCTTTTCCTGCCGGCGCG
66 TCGGGCTTCCTCTCTCTCACTCTTCTCCTGCCGGCGCG
* * * * *
25507007 AACCCCCTTGACACCGATCGGGTGCTTCCGCTCTCTTCCCTGCATCGGGTCTAGTGGCT-CGACG
1 AACCCCCTTGACACCGATCAGGTGCCTCCGCTCTCTTCCCTGCACCAGATCTAGTGG-TGCGACG
25507071 GTCGGGCTTCCTCTCTCTCACTCTTCTCCTG
65 GTCGGGCTTCCTCTCTCTCACTCTTCTCCTG
25507102 TGCTTTGTCG
Statistics
Matches: 84, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
103 83 0.99
104 1 0.01
ACGTcount: A:0.10, C:0.38, G:0.23, T:0.29
Consensus pattern (103 bp):
AACCCCCTTGACACCGATCAGGTGCCTCCGCTCTCTTCCCTGCACCAGATCTAGTGGTGCGACGG
TCGGGCTTCCTCTCTCTCACTCTTCTCCTGCCGGCGCG
Found at i:25507220 original size:23 final size:22
Alignment explanation
Indices: 25507187--25507232 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 22
25507177 CCCATTGCAT
*
25507187 ATTTTTCATATTTTTTTCTTTG
1 ATTTTTCATATTTTTTTCATTG
25507209 ATTTTTCTATATTTTTTTCATTG
1 ATTTTTC-ATATTTTTTTCATTG
25507232 A
1 A
25507233 GAAATTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 7 0.32
23 15 0.68
ACGTcount: A:0.17, C:0.09, G:0.04, T:0.70
Consensus pattern (22 bp):
ATTTTTCATATTTTTTTCATTG
Done.