Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41236440
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2030548 characters in sequence are not A, C, G, or T
File 69 of 106
Found at i:26286966 original size:81 final size:81
Alignment explanation
Indices: 26286876--26287101 Score: 373
Period size: 81 Copynumber: 2.8 Consensus size: 81
26286866 ATGATGAGGT
*
26286876 TGCCTATGTGCGCGATGTGGGGGGAGCACATGATGGCATTAGTTGTGCACGATG-GTGGGGTGCA
1 TGCC-ATGTGCGCGATGTGGGGGGAGCACATGATGGCATTAGTTGTGCGCGATGTG-GGGGTGCA
26286940 CACGATGATGATGATATA
64 CACGATGATGATGATATA
* *
26286958 TGCCATGTGCGCAATGTGGGGGGAGCACATGATGGCATTAGTTGTGCGCGATGTGGGGGTCCACA
1 TGCCATGTGCGCGATGTGGGGGGAGCACATGATGGCATTAGTTGTGCGCGATGTGGGGGTGCACA
*
26287023 TGATGATGATGATATA
66 CGATGATGATGATATA
* *
26287039 TGCCATGTTCGCGATGTGGGGGAAGCACATGATGGCATTAGTTGTGCGCGATGTGGGGGTGCA
1 TGCCATGTGCGCGATGTGGGGGGAGCACATGATGGCATTAGTTGTGCGCGATGTGGGGGTGCA
26287102 TAGATGTCTC
Statistics
Matches: 135, Mismatches: 8, Indels: 3
0.92 0.05 0.02
Matches are distributed among these distances:
81 130 0.96
82 5 0.04
ACGTcount: A:0.21, C:0.15, G:0.38, T:0.26
Consensus pattern (81 bp):
TGCCATGTGCGCGATGTGGGGGGAGCACATGATGGCATTAGTTGTGCGCGATGTGGGGGTGCACA
CGATGATGATGATATA
Found at i:26286986 original size:45 final size:45
Alignment explanation
Indices: 26286919--26287072 Score: 123
Period size: 44 Copynumber: 3.6 Consensus size: 45
26286909 TGGCATTAGT
* * *
26286919 TGTGCACGATG-GTGGGGTGCACACGATGATGATGATATATGCCA
1 TGTGCGCGATGTGGGGGGAGCACACGATGATGATGATATATGCCA
* *
26286963 TGTGCGCAATGTGGGGGGAG--CAC-ATGATG--GCAT-TA-G--T
1 TGTGCGCGATGTGGGGGGAGCACACGATGATGATG-ATATATGCCA
** *
26287000 TGTGCGCGATGT-GGGGGTCCACATGATGATGATGATATATGCCA
1 TGTGCGCGATGTGGGGGGAGCACACGATGATGATGATATATGCCA
* * *
26287044 TGTTCGCGATGTGGGGGAAGCACATGATG
1 TGTGCGCGATGTGGGGGGAGCACACGATG
26287073 GCATTAGTTG
Statistics
Matches: 84, Mismatches: 14, Indels: 23
0.69 0.12 0.19
Matches are distributed among these distances:
36 5 0.06
37 11 0.13
38 2 0.02
39 7 0.08
40 5 0.06
41 5 0.06
42 7 0.08
43 3 0.04
44 20 0.24
45 19 0.23
ACGTcount: A:0.23, C:0.15, G:0.37, T:0.25
Consensus pattern (45 bp):
TGTGCGCGATGTGGGGGGAGCACACGATGATGATGATATATGCCA
Found at i:26287439 original size:63 final size:66
Alignment explanation
Indices: 26287362--26287527 Score: 196
Period size: 67 Copynumber: 2.5 Consensus size: 66
26287352 ATTTCGTAGT
* * *
26287362 AGCGAAATTCCATTTTTGCCACGGTGAGAAATTTTCAG-GTGT-G-G-CAAACACTATTCTCGCT
1 AGCGAAATTCCATTTTCGCCACGGCGAGAAACTTTC-GTGTGTCGTGACAAACACTATTCTCGCT
26287423 GC
65 GC
** *
26287425 AGCGAAATTCCATTTTCGCCTTGGCGAGAAACTTTCGTGTGTGCGTGATAAACACTATTCTCGCT
1 AGCGAAATTCCATTTTCGCCACGGCGAGAAACTTTCGTGTGT-CGTGACAAACACTATTCTCGCT
26287490 GC
65 GC
* * * *
26287492 AGCTAAATTTCATTTTCACCACGACGAGAAACTTTC
1 AGCGAAATTCCATTTTCGCCACGGCGAGAAACTTTC
26287528 TATTTTGTGT
Statistics
Matches: 86, Mismatches: 12, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
62 1 0.01
63 35 0.41
65 1 0.01
66 1 0.01
67 48 0.56
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (66 bp):
AGCGAAATTCCATTTTCGCCACGGCGAGAAACTTTCGTGTGTCGTGACAAACACTATTCTCGCTG
C
Found at i:26287628 original size:15 final size:16
Alignment explanation
Indices: 26287599--26287628 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26287589 TTTTTTCAAC
26287599 ATTAGAGGACTAAATA
1 ATTAGAGGACTAAATA
26287615 ATTAGAGG-CTAAAT
1 ATTAGAGGACTAAAT
26287629 TATGGGGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.47, C:0.07, G:0.20, T:0.27
Consensus pattern (16 bp):
ATTAGAGGACTAAATA
Found at i:26288880 original size:21 final size:21
Alignment explanation
Indices: 26288856--26288924 Score: 108
Period size: 21 Copynumber: 3.4 Consensus size: 21
26288846 GAAATAATAA
26288856 CTAGAAAAGTAGAAGATTTTC
1 CTAGAAAAGTAGAAGATTTTC
26288877 CTAGAAAAGTAGAAGATTTTC
1 CTAGAAAAGTAGAAGATTTTC
26288898 CTAG-AAA--AGAAGATTTTC
1 CTAGAAAAGTAGAAGATTTTC
*
26288916 CAAGAAAAG
1 CTAGAAAAG
26288925 CATACCTCAA
Statistics
Matches: 45, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
18 14 0.31
19 3 0.07
20 3 0.07
21 25 0.56
ACGTcount: A:0.46, C:0.10, G:0.19, T:0.25
Consensus pattern (21 bp):
CTAGAAAAGTAGAAGATTTTC
Found at i:26288910 original size:18 final size:18
Alignment explanation
Indices: 26288866--26288924 Score: 82
Period size: 18 Copynumber: 3.1 Consensus size: 18
26288856 CTAGAAAAGT
26288866 AGAAGATTTTCCTAGAAAA
1 AGAAGATTTTCCTAG-AAA
26288885 GTAGAAGATTTTCCTAGAAA
1 --AGAAGATTTTCCTAGAAA
*
26288905 AGAAGATTTTCCAAGAAA
1 AGAAGATTTTCCTAGAAA
26288923 AG
1 AG
26288925 CATACCTCAA
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
18 19 0.51
20 3 0.08
21 15 0.41
ACGTcount: A:0.46, C:0.10, G:0.19, T:0.25
Consensus pattern (18 bp):
AGAAGATTTTCCTAGAAA
Found at i:26295435 original size:35 final size:35
Alignment explanation
Indices: 26295396--26295503 Score: 137
Period size: 35 Copynumber: 3.1 Consensus size: 35
26295386 GTTTGGATAG
*
26295396 TGATGTTGATGTGTGCGAGGAAGGAGTGCACATGA
1 TGATGTTGATGTGTGCGAGGAAGGAGTGCACACGA
*
26295431 TGATGTTGATGTGTGCGA-GTAGAGAGTGCACACGA
1 TGATGTTGATGTGTGCGAGGAAG-GAGTGCACACGA
* * * * *
26295466 TGATGTTAAAGTGTGCGAGTAGGGAGAGCACACGA
1 TGATGTTGATGTGTGCGAGGAAGGAGTGCACACGA
26295501 TGA
1 TGA
26295504 CATTACCTTG
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
34 3 0.05
35 59 0.94
36 1 0.02
ACGTcount: A:0.28, C:0.10, G:0.38, T:0.24
Consensus pattern (35 bp):
TGATGTTGATGTGTGCGAGGAAGGAGTGCACACGA
Found at i:26295516 original size:35 final size:35
Alignment explanation
Indices: 26295406--26295532 Score: 112
Period size: 35 Copynumber: 3.6 Consensus size: 35
26295396 TGATGTTGAT
* * ** * *
26295406 GTGTGCGAGGA-AGGAGTGCACATGATGATGTTGAT
1 GTGTGCGAGTAGA-GAGTGCACACGATGACATTAAA
**
26295441 GTGTGCGAGTAGAGAGTGCACACGATGATGTTAAA
1 GTGTGCGAGTAGAGAGTGCACACGATGACATTAAA
* * **
26295476 GTGTGCGAGTAGGGAGAGCACACGATGACATTACC
1 GTGTGCGAGTAGAGAGTGCACACGATGACATTAAA
* *
26295511 TTGTGCGTGTAGAGAGTGCACA
1 GTGTGCGAGTAGAGAGTGCACA
26295533 TTGGCTGAGT
Statistics
Matches: 77, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
35 76 0.99
36 1 0.01
ACGTcount: A:0.28, C:0.13, G:0.36, T:0.23
Consensus pattern (35 bp):
GTGTGCGAGTAGAGAGTGCACACGATGACATTAAA
Found at i:26295864 original size:21 final size:21
Alignment explanation
Indices: 26295829--26295868 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
26295819 AATAAGAATT
*
26295829 AAACTAAATTGCATTGTTTTTG
1 AAACTAAAGTGCATT-TTTTTG
26295851 AAACT-AAGTGCATTTTTT
1 AAACTAAAGTGCATTTTTT
26295869 GAACTTTCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 8 0.47
22 5 0.29
ACGTcount: A:0.33, C:0.10, G:0.12, T:0.45
Consensus pattern (21 bp):
AAACTAAAGTGCATTTTTTTG
Found at i:26306788 original size:42 final size:42
Alignment explanation
Indices: 26306727--26306873 Score: 240
Period size: 42 Copynumber: 3.5 Consensus size: 42
26306717 GTACACTACC
* * *
26306727 ACACCGCACATAGCCGGGTCAGCACAGCTCATGTGCACTCAT
1 ACACCGCACATGGCTGGGTCAGCACAGCTCATGTGCACTCCT
26306769 ACACCGCACATGGCTGGGTCAGCACAGCTCATGTGCACTCCT
1 ACACCGCACATGGCTGGGTCAGCACAGCTCATGTGCACTCCT
* *
26306811 ACACCGCACATGGTTGGGTTAGCACAGCTCATGTGCACTCCT
1 ACACCGCACATGGCTGGGTCAGCACAGCTCATGTGCACTCCT
*
26306853 ACACCGCACATGGTTGGGTCA
1 ACACCGCACATGGCTGGGTCA
26306874 TAATTATCAC
Statistics
Matches: 99, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 99 1.00
ACGTcount: A:0.23, C:0.33, G:0.24, T:0.20
Consensus pattern (42 bp):
ACACCGCACATGGCTGGGTCAGCACAGCTCATGTGCACTCCT
Found at i:26307497 original size:23 final size:23
Alignment explanation
Indices: 26307451--26307498 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
26307441 TTTCTAAATA
* *
26307451 ATTTCCACCCAAATCCATCTTAT
1 ATTTCCACACAAATCCATCATAT
26307474 ATTTCCACACAGAATCCA-CATAT
1 ATTTCCACACA-AATCCATCATAT
26307497 AT
1 AT
26307499 GGCAGAAACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 16 0.73
24 6 0.27
ACGTcount: A:0.35, C:0.31, G:0.02, T:0.31
Consensus pattern (23 bp):
ATTTCCACACAAATCCATCATAT
Found at i:26310507 original size:27 final size:27
Alignment explanation
Indices: 26310477--26310549 Score: 119
Period size: 27 Copynumber: 2.7 Consensus size: 27
26310467 TTTATTTCTA
*
26310477 TTGGGCCATGCCCATTTTTCTCTCTTG
1 TTGGGCCATGCCCATTTTCCTCTCTTG
* *
26310504 TTGGGCCATGCTCATTTTCCTTTCTTG
1 TTGGGCCATGCCCATTTTCCTCTCTTG
26310531 TTGGGCCATGCCCATTTTC
1 TTGGGCCATGCCCATTTTC
26310550 TTTTTCTTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.08, C:0.29, G:0.19, T:0.44
Consensus pattern (27 bp):
TTGGGCCATGCCCATTTTCCTCTCTTG
Found at i:26310728 original size:36 final size:35
Alignment explanation
Indices: 26310676--26310748 Score: 110
Period size: 36 Copynumber: 2.1 Consensus size: 35
26310666 TATTGGCTTC
* *
26310676 AAAATCAGCAGTTAAGCTGCTCTATTTCTCTTCAAA
1 AAAATCAGCAGCTAAGCTGCACTATTTC-CTTCAAA
*
26310712 AAAATCAGCAGCTAAGCTGCACTTTTTCCTTCAAA
1 AAAATCAGCAGCTAAGCTGCACTATTTCCTTCAAA
26310747 AA
1 AA
26310749 TTAGTAGCCA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
35 9 0.26
36 25 0.74
ACGTcount: A:0.36, C:0.23, G:0.11, T:0.30
Consensus pattern (35 bp):
AAAATCAGCAGCTAAGCTGCACTATTTCCTTCAAA
Found at i:26314848 original size:2 final size:2
Alignment explanation
Indices: 26314838--26314873 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
26314828 CATGACACAC
* *
26314838 AT AT CT AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26314874 CCATCATCAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26314996 original size:42 final size:42
Alignment explanation
Indices: 26314950--26315067 Score: 157
Period size: 42 Copynumber: 2.8 Consensus size: 42
26314940 TCAGCATCAA
* *
26314950 CTTATGCGCACTCCTACTCATACATAGTCGGGTCATCATCGG
1 CTTATGCGCACTCCTACTCACACATAGCCGGGTCATCATCGG
* *
26314992 CTTATGCGCACTCTTACT-AGCACATAGCCAGGTCATCATCGG
1 CTTATGCGCACTCCTACTCA-CACATAGCCGGGTCATCATCGG
* * *
26315034 CGTATACGCACTCCTACTCGCACATAGCCGGGTC
1 CTTATGCGCACTCCTACTCACACATAGCCGGGTC
26315068 CACATCAACA
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
41 1 0.02
42 64 0.98
ACGTcount: A:0.22, C:0.33, G:0.19, T:0.25
Consensus pattern (42 bp):
CTTATGCGCACTCCTACTCACACATAGCCGGGTCATCATCGG
Found at i:26317925 original size:27 final size:28
Alignment explanation
Indices: 26317895--26317951 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 28
26317885 TCAGAGTATA
* * *
26317895 AGGGTAAAATC-GTAATTTTTTCATCCC
1 AGGGGAAAATCGGTAAATTTTTCACCCC
*
26317922 AGGGGCAAATCGGTAAATTTTTCACCCC
1 AGGGGAAAATCGGTAAATTTTTCACCCC
26317950 AG
1 AG
26317952 CACTTGTCAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
27 9 0.36
28 16 0.64
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (28 bp):
AGGGGAAAATCGGTAAATTTTTCACCCC
Found at i:26319381 original size:38 final size:40
Alignment explanation
Indices: 26319339--26319441 Score: 138
Period size: 38 Copynumber: 2.6 Consensus size: 40
26319329 GGCACCATCG
*
26319339 TGTGCACGATGTGGGGGGATGTACACGATGGCACTGA-T-
1 TGTGCACGATGTGGGGGGATGTACACGATGGCACCGACTA
* * **
26319377 TGTGCACGATGTGGGAGGATGCACACGATGGTGCCGACTA
1 TGTGCACGATGTGGGGGGATGTACACGATGGCACCGACTA
*
26319417 TGTGCACTATGTGGGGGGATGTACA
1 TGTGCACGATGTGGGGGGATGTACA
26319442 TGAATCGAGT
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
38 32 0.58
39 1 0.02
40 22 0.40
ACGTcount: A:0.21, C:0.17, G:0.39, T:0.23
Consensus pattern (40 bp):
TGTGCACGATGTGGGGGGATGTACACGATGGCACCGACTA
Found at i:26325389 original size:14 final size:14
Alignment explanation
Indices: 26325367--26325399 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
26325357 CAACCACCTC
*
26325367 TGAATTTGAAAACA
1 TGAAGTTGAAAACA
26325381 TGAAGTTGAAAACA
1 TGAAGTTGAAAACA
26325395 T-AAGT
1 TGAAGT
26325400 ATAAACTCAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 4 0.22
14 14 0.78
ACGTcount: A:0.48, C:0.06, G:0.18, T:0.27
Consensus pattern (14 bp):
TGAAGTTGAAAACA
Found at i:26325823 original size:41 final size:42
Alignment explanation
Indices: 26325703--26325834 Score: 185
Period size: 42 Copynumber: 3.2 Consensus size: 42
26325693 CACACAAAGT
* *
26325703 TGGGTCAGCACATCTCATGTGCACTCATACACTGCACATGGC
1 TGGGTCAGCACAACTCATGTGCACTCCTACACTGCACATGGC
* * *
26325745 TAGGTCAGCACAACTCATGTGCATTTCTACACTGCACATGGC
1 TGGGTCAGCACAACTCATGTGCACTCCTACACTGCACATGGC
* * *
26325787 TGGGTCAGTACAACT-ATGTGCACTCCTACACAGCACATGGT
1 TGGGTCAGCACAACTCATGTGCACTCCTACACTGCACATGGC
26325828 TGGGTCA
1 TGGGTCA
26325835 TAATTATCAC
Statistics
Matches: 79, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
41 29 0.37
42 50 0.63
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (42 bp):
TGGGTCAGCACAACTCATGTGCACTCCTACACTGCACATGGC
Found at i:26331792 original size:16 final size:16
Alignment explanation
Indices: 26331771--26331829 Score: 61
Period size: 16 Copynumber: 3.8 Consensus size: 16
26331761 AGATAGTTGG
*
26331771 AAGAAAGGAGAAAG-GA
1 AAGAAA-GAAAAAGAGA
26331787 AAGAAAGAAAAAGAGA
1 AAGAAAGAAAAAGAGA
* *
26331803 AAG-AA-AAAGAGAAA
1 AAGAAAGAAAAAGAGA
26331817 AAGAAAGAAAAAG
1 AAGAAAGAAAAAG
26331830 CTTGGTTTTG
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
14 10 0.28
15 10 0.28
16 16 0.44
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (16 bp):
AAGAAAGAAAAAGAGA
Found at i:26331803 original size:12 final size:12
Alignment explanation
Indices: 26331788--26331829 Score: 59
Period size: 12 Copynumber: 3.5 Consensus size: 12
26331778 GAGAAAGGAA
26331788 AGAAAGAAAAAG
1 AGAAAGAAAAAG
26331800 AGAAAGAAAAAG
1 AGAAAGAAAAAG
26331812 AGAAA-AAGAAAG
1 AGAAAGAA-AAAG
*
26331824 AAAAAG
1 AGAAAG
26331830 CTTGGTTTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
11 2 0.07
12 25 0.93
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
AGAAAGAAAAAG
Found at i:26331805 original size:6 final size:6
Alignment explanation
Indices: 26331772--26331829 Score: 50
Period size: 6 Copynumber: 10.0 Consensus size: 6
26331762 GATAGTTGGA
* * *
26331772 AGAAAGG AGAAAG -G-AA- AGAAAG AAAAAG AGAAAG AAAAAG AGAAAA
1 AGAAA-G AGAAAG AGAAAG AGAAAG AGAAAG AGAAAG AGAAAG AGAAAG
*
26331818 AGAAAG AAAAAG
1 AGAAAG AGAAAG
26331830 CTTGGTTTTG
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
4 3 0.07
5 3 0.07
6 30 0.73
7 5 0.12
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (6 bp):
AGAAAG
Found at i:26331821 original size:18 final size:18
Alignment explanation
Indices: 26331790--26331829 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 18
26331780 GAAAGGAAAG
26331790 AAAGAAAAAGAGAAAGAA
1 AAAGAAAAAGAGAAAGAA
26331808 AAAGAGAAAA-AGAAAGAA
1 AAAGA-AAAAGAGAAAGAA
26331826 AAAG
1 AAAG
26331830 CTTGGTTTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 17 0.81
19 4 0.19
ACGTcount: A:0.78, C:0.00, G:0.23, T:0.00
Consensus pattern (18 bp):
AAAGAAAAAGAGAAAGAA
Found at i:26332914 original size:37 final size:37
Alignment explanation
Indices: 26332864--26332944 Score: 135
Period size: 37 Copynumber: 2.2 Consensus size: 37
26332854 GAAGTTCGTG
*
26332864 TGATGATATTGAAATGTGGGTGTAGAGAGTGCACATGA
1 TGAT-ATATTGAAATGTGCGTGTAGAGAGTGCACATGA
*
26332902 TGATATATTGAAATGTGCGTGTAGGGAGTGCACATGA
1 TGATATATTGAAATGTGCGTGTAGAGAGTGCACATGA
26332939 TGATAT
1 TGATAT
26332945 TGCCTTGTGC
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
37 37 0.90
38 4 0.10
ACGTcount: A:0.31, C:0.06, G:0.32, T:0.31
Consensus pattern (37 bp):
TGATATATTGAAATGTGCGTGTAGAGAGTGCACATGA
Found at i:26332954 original size:35 final size:35
Alignment explanation
Indices: 26332864--26332973 Score: 148
Period size: 35 Copynumber: 3.1 Consensus size: 35
26332854 GAAGTTCGTG
* *
26332864 TGATGATATTGAAATGTGGGTGTAGAGAGTGCACA
1 TGATGATATTGAAATGTGCGTGTAGGGAGTGCACA
26332899 TGATGATATATTGAAATGTGCGTGTAGGGAGTGCACA
1 TGATG--ATATTGAAATGTGCGTGTAGGGAGTGCACA
*** *
26332936 TGATGATATTGCCTTGTGCATGTAGGGAGTGCACA
1 TGATGATATTGAAATGTGCGTGTAGGGAGTGCACA
26332971 TGA
1 TGA
26332974 GCTGAGTAAG
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
35 34 0.51
37 33 0.49
ACGTcount: A:0.28, C:0.09, G:0.33, T:0.30
Consensus pattern (35 bp):
TGATGATATTGAAATGTGCGTGTAGGGAGTGCACA
Found at i:26333549 original size:2 final size:2
Alignment explanation
Indices: 26333542--26333569 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
26333532 TAGGGGATTT
26333542 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
26333570 CTTGTTCTCN
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:26350100 original size:67 final size:68
Alignment explanation
Indices: 26350008--26350197 Score: 224
Period size: 67 Copynumber: 2.8 Consensus size: 68
26349998 ATGCTTACTC
* * *
26350008 ATCTCATA-AGGTGTATGGAAAATACATCATATACATAATCTCATGGCATTCATCAGGCT-TTCT
1 ATCTCATATA-GTATATGGAATATACATCATATACATAATCTCATGGCATTCATCAGG-TATACT
26350071 CAATA
64 CAATA
* * * *
26350076 ATCTCATATAGTAT-TGGAATATACATCATATACATAATCTCATGGCATTGATTATGTATACTTA
1 ATCTCATATAGTATATGGAATATACATCATATACATAATCTCATGGCATTCATCAGGTATACTCA
*
26350140 ATC
66 ATA
* * * **
26350143 ATCTCATATGGTATATGGAATTTACATCATATACACAATCTCATGTTATTCATCA
1 ATCTCATATAGTATATGGAATATACATCATATACATAATCTCATGGCATTCATCA
26350198 TACCAAACAT
Statistics
Matches: 104, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
66 1 0.01
67 57 0.55
68 45 0.43
69 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.11, T:0.36
Consensus pattern (68 bp):
ATCTCATATAGTATATGGAATATACATCATATACATAATCTCATGGCATTCATCAGGTATACTCA
ATA
Found at i:26353361 original size:39 final size:40
Alignment explanation
Indices: 26353283--26353388 Score: 126
Period size: 39 Copynumber: 2.7 Consensus size: 40
26353273 TCACCCAACG
* **
26353283 CATGTGCATTCCCCCACATCGTGCACATAGCCGAAGTCAT
1 CATGTGCATCCCCCCACATCGTGCACATAGAAGAAGTCAT
*
26353323 CATGTGCATCCCCCCACATCGTGCACA-A-AATAATGTCAT
1 CATGTGCATCCCCCCACATCGTGCACATAGAAGAA-GTCAT
* * *
26353362 CGTGTACATCCCCCCACATTGTGCACA
1 CATGTGCATCCCCCCACATCGTGCACA
26353389 CGGGCAGTGT
Statistics
Matches: 58, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
38 2 0.03
39 30 0.52
40 26 0.45
ACGTcount: A:0.26, C:0.36, G:0.15, T:0.23
Consensus pattern (40 bp):
CATGTGCATCCCCCCACATCGTGCACATAGAAGAAGTCAT
Found at i:26354822 original size:92 final size:92
Alignment explanation
Indices: 26354654--26354920 Score: 363
Period size: 92 Copynumber: 2.9 Consensus size: 92
26354644 TGCCGGCAGC
* * * * * * *
26354654 CAAAACCTCAAAAATCAGCAACTAAAGCTGCTTCTTTCAACCTTCAAAAATTAGAAGTTAAAGCT
1 CAAAACCTCAAAAATCAGCAGCTAAAGCTGCTCCTTTTAGCCTTCAAAAATCAGCAGCTAAAGCT
* *
26354719 ACTCATCTCACCCTTAAAATCAGCAAG
66 GCTCATCTCACCCTCAAAATCAGCAAG
* * * *
26354746 CAAAACCTTAAAAATCAGCAGCTAAAGCTACTCCTTTTAGCCTTAAAAAATCAGCAGCTAAAGTT
1 CAAAACCTCAAAAATCAGCAGCTAAAGCTGCTCCTTTTAGCCTTCAAAAATCAGCAGCTAAAGCT
* * * **
26354811 GCTTATATCACCCTCAAAATCGGCATT
66 GCTCATCTCACCCTCAAAATCAGCAAG
*
26354838 CAAAACCTCAAAAATCAGCAGCTAAAGCTGCTCCTTTTAGCCTTCAAAAATCAGCAACTAAAGCT
1 CAAAACCTCAAAAATCAGCAGCTAAAGCTGCTCCTTTTAGCCTTCAAAAATCAGCAGCTAAAGCT
26354903 GCTCATCTCACCCTCAAA
66 GCTCATCTCACCCTCAAA
26354921 CTCTGCTCCT
Statistics
Matches: 150, Mismatches: 25, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
92 150 1.00
ACGTcount: A:0.39, C:0.27, G:0.10, T:0.24
Consensus pattern (92 bp):
CAAAACCTCAAAAATCAGCAGCTAAAGCTGCTCCTTTTAGCCTTCAAAAATCAGCAGCTAAAGCT
GCTCATCTCACCCTCAAAATCAGCAAG
Found at i:26355004 original size:18 final size:18
Alignment explanation
Indices: 26354981--26355015 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
26354971 GGCTTTTCTC
*
26354981 TTCTTTTTCTTTCCTTTG
1 TTCTTTTGCTTTCCTTTG
26354999 TTCTTTTGCTTTCCTTT
1 TTCTTTTGCTTTCCTTT
26355016 TGCTCTTTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.00, C:0.23, G:0.06, T:0.71
Consensus pattern (18 bp):
TTCTTTTGCTTTCCTTTG
Found at i:26355022 original size:19 final size:18
Alignment explanation
Indices: 26354982--26355023 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
26354972 GCTTTTCTCT
* *
26354982 TCTTTTTCTTTCCTTTGT
1 TCTTTTGCTTTCCTTTGC
26355000 TCTTTTGCTTTCCTTTTGC
1 TCTTTTGCTTTCC-TTTGC
26355019 TCTTT
1 TCTTT
26355024 CTCACAACCG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.00, C:0.24, G:0.07, T:0.69
Consensus pattern (18 bp):
TCTTTTGCTTTCCTTTGC
Found at i:26355612 original size:11 final size:11
Alignment explanation
Indices: 26355595--26355657 Score: 81
Period size: 11 Copynumber: 5.7 Consensus size: 11
26355585 TTGAATAAAA
26355595 TATTAATATTT
1 TATTAATATTT
*
26355606 TAATAATATTT
1 TATTAATATTT
***
26355617 TATTAATAAAA
1 TATTAATATTT
26355628 TATTAATATTT
1 TATTAATATTT
*
26355639 TAATAATATTT
1 TATTAATATTT
26355650 TATTAATA
1 TATTAATA
26355658 AAATATTATT
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 42 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (11 bp):
TATTAATATTT
Found at i:26355625 original size:33 final size:33
Alignment explanation
Indices: 26355588--26355665 Score: 156
Period size: 33 Copynumber: 2.4 Consensus size: 33
26355578 TTTGACATTG
26355588 AATAAAATATTAATATTTTAATAATATTTTATT
1 AATAAAATATTAATATTTTAATAATATTTTATT
26355621 AATAAAATATTAATATTTTAATAATATTTTATT
1 AATAAAATATTAATATTTTAATAATATTTTATT
26355654 AATAAAATATTA
1 AATAAAATATTA
26355666 TTTTATTCTA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (33 bp):
AATAAAATATTAATATTTTAATAATATTTTATT
Found at i:26355662 original size:19 final size:19
Alignment explanation
Indices: 26355607--26355672 Score: 61
Period size: 19 Copynumber: 3.7 Consensus size: 19
26355597 TTAATATTTT
26355607 AATAATATTTTATTAATAA
1 AATAATATTTTATTAATAA
** *
26355626 AAT-AT-TAATATT--T-T
1 AATAATATTTTATTAATAA
26355640 AATAATATTTTATTAATAA
1 AATAATATTTTATTAATAA
*
26355659 AATATTATTTTATT
1 AATAATATTTTATT
26355673 CTAAAAAACT
Statistics
Matches: 35, Mismatches: 7, Indels: 10
0.67 0.13 0.19
Matches are distributed among these distances:
14 3 0.09
15 3 0.09
16 5 0.14
17 5 0.14
18 3 0.09
19 16 0.46
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
AATAATATTTTATTAATAA
Found at i:26358174 original size:38 final size:39
Alignment explanation
Indices: 26358085--26358186 Score: 127
Period size: 38 Copynumber: 2.6 Consensus size: 39
26358075 ACCCGGCTCA
*
26358085 TGTACATCCCCCACATCGTGGACATAGCCAATGCCATCG
1 TGTACATCCCCCACATCGTGCACATAGCCAATGCCATCG
* ** *
26358124 TGTGCATTCCCCCACATCGTGCACA-A-TTAGTGCCATCG
1 TGTACA-TCCCCCACATCGTGCACATAGCCAATGCCATCG
26358162 TGTACATCCCCCCACATCGTGCACA
1 TGTACAT-CCCCCACATCGTGCACA
26358187 CGGGCACTAT
Statistics
Matches: 55, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
37 1 0.02
38 31 0.56
39 6 0.11
40 17 0.31
ACGTcount: A:0.24, C:0.37, G:0.17, T:0.23
Consensus pattern (39 bp):
TGTACATCCCCCACATCGTGCACATAGCCAATGCCATCG
Found at i:26361998 original size:43 final size:43
Alignment explanation
Indices: 26361950--26362059 Score: 148
Period size: 43 Copynumber: 2.6 Consensus size: 43
26361940 TCACCAGCTC
* ** *
26361950 ATGCGCATTCCCTACTCGCACATGGCTGGGTCATCATCGGGTT
1 ATGCGCACTCCCTACTCGCACATAACTAGGTCATCATCGGGTT
* *
26361993 ATGCGCACTCCCTACTCGCACATAACTAGGTCATCCTCGGTTT
1 ATGCGCACTCCCTACTCGCACATAACTAGGTCATCATCGGGTT
* *
26362036 ATGCACACTCTCTACTCGCACATA
1 ATGCGCACTCCCTACTCGCACATA
26362060 GCCGAGTCAA
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.21, C:0.34, G:0.18, T:0.27
Consensus pattern (43 bp):
ATGCGCACTCCCTACTCGCACATAACTAGGTCATCATCGGGTT
Found at i:26384751 original size:16 final size:16
Alignment explanation
Indices: 26384714--26384748 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
26384704 TGCCCACTTA
26384714 TTTTCTATTTCTTTTC
1 TTTTCTATTTCTTTTC
*
26384730 TTTTCTTTTTC-TTTC
1 TTTTCTATTTCTTTTC
26384745 TTTT
1 TTTT
26384749 TCTCTCTTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.80
Consensus pattern (16 bp):
TTTTCTATTTCTTTTC
Found at i:26384767 original size:31 final size:29
Alignment explanation
Indices: 26384731--26384788 Score: 80
Period size: 31 Copynumber: 1.9 Consensus size: 29
26384721 TTTCTTTTCT
*
26384731 TTTCTTTTTCTTTCTTTTTCTCTCTTCCACG
1 TTTCTTCTTCTTT-TTTTTCTCT-TTCCACG
*
26384762 TTTCTTCTTCTTTTTTTTTTCTTTCCA
1 TTTCTTCTTCTTTTTTTTCTCTTTCCA
26384789 GCCCATCACT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 5 0.20
30 8 0.32
31 12 0.48
ACGTcount: A:0.03, C:0.26, G:0.02, T:0.69
Consensus pattern (29 bp):
TTTCTTCTTCTTTTTTTTCTCTTTCCACG
Found at i:26385011 original size:34 final size:34
Alignment explanation
Indices: 26384973--26385037 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
26384963 AATTTTCCTA
*
26384973 CACAAATT-ACCAACAAACAGCTCCAATTTTTTTG
1 CACAAATTGA-CAACAAACAGCTCAAATTTTTTTG
**
26385007 CACAAATTGACAGTAAACAGCTCAAATTTTT
1 CACAAATTGACAACAAACAGCTCAAATTTTT
26385038 AGCAGCCAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
34 26 0.96
35 1 0.04
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.29
Consensus pattern (34 bp):
CACAAATTGACAACAAACAGCTCAAATTTTTTTG
Found at i:26402576 original size:21 final size:22
Alignment explanation
Indices: 26402551--26402591 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
26402541 CCTAGGTGGA
*
26402551 AAAATTCAAGGGAA-AAGTGTG
1 AAAATTCAAGGAAACAAGTGTG
26402572 AAAATTCAAGGAAACAAGTG
1 AAAATTCAAGGAAACAAGTG
26402592 AAAAAAAGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.51, C:0.07, G:0.24, T:0.17
Consensus pattern (22 bp):
AAAATTCAAGGAAACAAGTGTG
Found at i:26402592 original size:20 final size:21
Alignment explanation
Indices: 26402551--26402595 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
26402541 CCTAGGTGGA
*
26402551 AAAATTCAAGGGAAAAGTGTG
1 AAAATTCAAGGGAAAAGAGTG
26402572 AAAATTCAA-GGAAACA-AGTG
1 AAAATTCAAGGGAAA-AGAGTG
26402592 AAAA
1 AAAA
26402596 AAAGGTAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.56, C:0.07, G:0.22, T:0.16
Consensus pattern (21 bp):
AAAATTCAAGGGAAAAGAGTG
Found at i:26402596 original size:21 final size:20
Alignment explanation
Indices: 26402549--26402596 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 20
26402539 ACCCTAGGTG
*
26402549 GAAAAATTCAAGGGAAAAGT
1 GAAAAATTCAAGGAAAAAGT
*
26402569 GTGAAAATTCAAGGAAACAAGT
1 G-AAAAATTCAAGGAAA-AAGT
26402591 GAAAAA
1 GAAAAA
26402597 AAGGTAAGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 17 0.74
22 5 0.22
ACGTcount: A:0.56, C:0.06, G:0.23, T:0.15
Consensus pattern (20 bp):
GAAAAATTCAAGGAAAAAGT
Found at i:26404832 original size:21 final size:20
Alignment explanation
Indices: 26404808--26404855 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 20
26404798 ATCTTACCTT
*
26404808 TTTTTCACTTGTTTCCTTGAA
1 TTTTTCACTT-TTCCCTTGAA
*
26404829 TTTTCACACTTTTCCCTTGAA
1 TTTT-TCACTTTTCCCTTGAA
26404850 TTTTTC
1 TTTTTC
26404856 CACCTAGGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 17 0.74
22 5 0.22
ACGTcount: A:0.15, C:0.23, G:0.06, T:0.56
Consensus pattern (20 bp):
TTTTTCACTTTTCCCTTGAA
Found at i:26404855 original size:22 final size:22
Alignment explanation
Indices: 26404813--26404853 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
26404803 ACCTTTTTTT
*
26404813 CACTTGTTTCCTTGAATTTTCA
1 CACTTGTTCCCTTGAATTTTCA
26404835 CACTT-TTCCCTTGAATTTT
1 CACTTGTTCCCTTGAATTTT
26404854 TCCACCTAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.17, C:0.24, G:0.07, T:0.51
Consensus pattern (22 bp):
CACTTGTTCCCTTGAATTTTCA
Found at i:26409864 original size:11 final size:11
Alignment explanation
Indices: 26409848--26409875 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
26409838 CATTGTAAAT
26409848 TTTAAAACAAC
1 TTTAAAACAAC
26409859 TTTAAAACAAC
1 TTTAAAACAAC
26409870 TTTAAA
1 TTTAAA
26409876 CCCAAAAGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.54, C:0.14, G:0.00, T:0.32
Consensus pattern (11 bp):
TTTAAAACAAC
Found at i:26409894 original size:22 final size:22
Alignment explanation
Indices: 26409869--26409912 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
26409859 TTTAAAACAA
*
26409869 CTTTAAACCCAAAAGCTCTGAT
1 CTTTAAAACCAAAAGCTCTGAT
*
26409891 CTTTAAAACCAAAGGCTCTGAT
1 CTTTAAAACCAAAAGCTCTGAT
26409913 ACCACTCTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.36, C:0.25, G:0.11, T:0.27
Consensus pattern (22 bp):
CTTTAAAACCAAAAGCTCTGAT
Found at i:26412200 original size:21 final size:20
Alignment explanation
Indices: 26412176--26412223 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 20
26412166 ATCTTACCTT
*
26412176 TTTTTCACTTGTTTCCTTGAA
1 TTTTTCACTT-TTCCCTTGAA
*
26412197 TTTTCACACTTTTCCCTTGAA
1 TTTT-TCACTTTTCCCTTGAA
26412218 TTTTTC
1 TTTTTC
26412224 CACCTAAGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 17 0.74
22 5 0.22
ACGTcount: A:0.15, C:0.23, G:0.06, T:0.56
Consensus pattern (20 bp):
TTTTTCACTTTTCCCTTGAA
Found at i:26412223 original size:22 final size:22
Alignment explanation
Indices: 26412181--26412221 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
26412171 ACCTTTTTTT
*
26412181 CACTTGTTTCCTTGAATTTTCA
1 CACTTGTTCCCTTGAATTTTCA
26412203 CACTT-TTCCCTTGAATTTT
1 CACTTGTTCCCTTGAATTTT
26412222 TCCACCTAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.17, C:0.24, G:0.07, T:0.51
Consensus pattern (22 bp):
CACTTGTTCCCTTGAATTTTCA
Found at i:26415071 original size:19 final size:19
Alignment explanation
Indices: 26415047--26415084 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
26415037 CCATTTGACT
26415047 TATTGGAGTATGATTTGAG
1 TATTGGAGTATGATTTGAG
26415066 TATTGGAGTATGATTTGAG
1 TATTGGAGTATGATTTGAG
26415085 GTTTAGAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.00, G:0.32, T:0.42
Consensus pattern (19 bp):
TATTGGAGTATGATTTGAG
Found at i:26433616 original size:25 final size:25
Alignment explanation
Indices: 26433588--26433649 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 25
26433578 CAATTTATTT
*
26433588 TTATTTCCTATTGGGCCATGCCCAC
1 TTATTTTCTATTGGGCCATGCCCAC
* * *
26433613 TTATTTTCTATGGGGTCATGCCCAT
1 TTATTTTCTATTGGGCCATGCCCAC
26433638 TTATTTTCTATT
1 TTATTTTCTATT
26433650 TCTTTTTCTT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.16, C:0.23, G:0.15, T:0.47
Consensus pattern (25 bp):
TTATTTTCTATTGGGCCATGCCCAC
Found at i:26433943 original size:34 final size:34
Alignment explanation
Indices: 26433887--26434026 Score: 129
Period size: 34 Copynumber: 4.1 Consensus size: 34
26433877 AGCTGTCCAA
* ** * *
26433887 TTTTCCTACACAAACTACCAGCAAATAGCTCCAAT
1 TTTTCC-ACACAAATTGGCAGCAAACAGCTCAAAT
* *
26433922 TTTTCCACACAAATTGGCAGCAAACAACTCAAAC
1 TTTTCCACACAAATTGGCAGCAAACAGCTCAAAT
* ** *
26433956 CTTTCTGCACAAATTGACAGCAAACAGCTCAAAT
1 TTTTCCACACAAATTGGCAGCAAACAGCTCAAAT
***
26433990 TTTTTTGCACAAATTGGCAGCAAACAGCT-AAGAT
1 TTTTCCACACAAATTGGCAGCAAACAGCTCAA-AT
26434024 TTT
1 TTT
26434027 CAGTAGCCAA
Statistics
Matches: 88, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
33 2 0.02
34 80 0.91
35 6 0.07
ACGTcount: A:0.37, C:0.26, G:0.11, T:0.26
Consensus pattern (34 bp):
TTTTCCACACAAATTGGCAGCAAACAGCTCAAAT
Found at i:26436060 original size:25 final size:25
Alignment explanation
Indices: 26436032--26436086 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
26436022 GGACTTCTCA
*
26436032 CATTTCTTT-TTAATTGGGCCATGCC
1 CATTTCTTTCTT-ATTGAGCCATGCC
*
26436057 CA-TTCTTTCCTTATTGAGCCATGTC
1 CATTTCTTT-CTTATTGAGCCATGCC
26436082 CATTT
1 CATTT
26436087 ATATGCATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
24 6 0.24
25 15 0.60
26 4 0.16
ACGTcount: A:0.16, C:0.25, G:0.13, T:0.45
Consensus pattern (25 bp):
CATTTCTTTCTTATTGAGCCATGCC
Found at i:26438819 original size:41 final size:42
Alignment explanation
Indices: 26438727--26438842 Score: 162
Period size: 41 Copynumber: 2.8 Consensus size: 42
26438717 CATCTCATAT
* *
26438727 GCAACGGCTTATGCGCACTCCCACTCACACATAACCGGGTCA
1 GCAACGGCTTATGTGCACTCCCACTCGCACATAACCGGGTCA
** *
26438769 GCAACGGCTTATGTGCACTCCCACTCGCACAT-GTCGGGTTA
1 GCAACGGCTTATGTGCACTCCCACTCGCACATAACCGGGTCA
* *
26438810 GCAACGGCTTATGTGCACTCCTACTCGTACATA
1 GCAACGGCTTATGTGCACTCCCACTCGCACATA
26438843 GCCAAGTCCA
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
41 36 0.55
42 30 0.45
ACGTcount: A:0.23, C:0.34, G:0.21, T:0.22
Consensus pattern (42 bp):
GCAACGGCTTATGTGCACTCCCACTCGCACATAACCGGGTCA
Found at i:26440666 original size:2 final size:2
Alignment explanation
Indices: 26440659--26440686 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
26440649 TATTATTGTA
26440659 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26440687 TTAAGTTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26445475 original size:42 final size:42
Alignment explanation
Indices: 26445429--26445552 Score: 160
Period size: 42 Copynumber: 3.0 Consensus size: 42
26445419 GTGAACCCAG
* * *
26445429 CTATGTGCGAGTAAGAGTGTACATAAGCCGATGATGACTCGA
1 CTATGTGCGAGTAGGAGTGAACATAAGCCGATGATGACCCGA
** *
26445471 CTATGTGCGAGTAGGAGTGCGCATAAGCCAATGATGACCCGA
1 CTATGTGCGAGTAGGAGTGAACATAAGCCGATGATGACCCGA
* *
26445513 CTATGTACGAGTAGGAG-CAAGCATAAGCCGATGATGACCC
1 CTATGTGCGAGTAGGAGTGAA-CATAAGCCGATGATGACCC
26445553 AGCCATGTGC
Statistics
Matches: 71, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.31, C:0.20, G:0.29, T:0.20
Consensus pattern (42 bp):
CTATGTGCGAGTAGGAGTGAACATAAGCCGATGATGACCCGA
Found at i:26445623 original size:2 final size:2
Alignment explanation
Indices: 26445616--26445642 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
26445606 ATGATGATGA
26445616 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
26445643 CATGTATAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:26460098 original size:26 final size:26
Alignment explanation
Indices: 26460038--26460099 Score: 106
Period size: 26 Copynumber: 2.4 Consensus size: 26
26460028 ACCATATACC
*
26460038 CATCATCAACATGCACACCATCCCAT
1 CATCATCATCATGCACACCATCCCAT
*
26460064 CATCATCATCATGCACATCATCCCAT
1 CATCATCATCATGCACACCATCCCAT
26460090 CATCATCATC
1 CATCATCATC
26460100 TCATATGCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.32, C:0.40, G:0.03, T:0.24
Consensus pattern (26 bp):
CATCATCATCATGCACACCATCCCAT
Found at i:26460392 original size:42 final size:42
Alignment explanation
Indices: 26460334--26460457 Score: 212
Period size: 42 Copynumber: 3.0 Consensus size: 42
26460324 ATGGAGGCAA
* *
26460334 CAACGGCTTATGTGCACTCCCACTCACACATAGCCGGGTCAG
1 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTCAG
* *
26460376 CAACGGCTTATATGCACTCCTACTCGCACATAGTCGGGTCAG
1 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTCAG
26460418 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTC
1 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTC
26460458 CAAATCAACA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 76 1.00
ACGTcount: A:0.23, C:0.34, G:0.22, T:0.22
Consensus pattern (42 bp):
CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTCAG
Found at i:26462651 original size:10 final size:10
Alignment explanation
Indices: 26462636--26462664 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
26462626 TAGGAGTACT
26462636 AATCCTTTAC
1 AATCCTTTAC
26462646 AATCCTTTAC
1 AATCCTTTAC
26462656 AATCCTTTA
1 AATCCTTTA
26462665 AAACAAACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.31, C:0.28, G:0.00, T:0.41
Consensus pattern (10 bp):
AATCCTTTAC
Found at i:26473484 original size:35 final size:35
Alignment explanation
Indices: 26473433--26473500 Score: 109
Period size: 35 Copynumber: 1.9 Consensus size: 35
26473423 TGAAAAGTTA
*
26473433 GTGAGGGTTATGCTTGCTCTCGTTAAGAGGCATTT
1 GTGAGGGTTATGCTTGCTCTCGTTAAAAGGCATTT
* *
26473468 GTGAGGGTTTTTCTTGCTCTCGTTAAAAGGCAT
1 GTGAGGGTTATGCTTGCTCTCGTTAAAAGGCAT
26473501 GGTAAAGGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.18, C:0.15, G:0.29, T:0.38
Consensus pattern (35 bp):
GTGAGGGTTATGCTTGCTCTCGTTAAAAGGCATTT
Found at i:26475441 original size:54 final size:54
Alignment explanation
Indices: 26475370--26475527 Score: 219
Period size: 54 Copynumber: 2.9 Consensus size: 54
26475360 ATTCGTATAC
* *
26475370 CACCCCATCTCACCCAGCTTATGTACATCCCCCCACATCGTGCACATAGCC-AGA
1 CACCCCATCTCACCCAGCTCATGTGCATCCCCCCACATCGTGCACATAGCCGA-A
* * *
26475424 CACCCCATTTCAACCAGCTCATGTGCATCCCCCTACATCGTGCACATAGCCGAA
1 CACCCCATCTCACCCAGCTCATGTGCATCCCCCCACATCGTGCACATAGCCGAA
* * * *
26475478 CACCCCATCTCACCCAACTCATGTGCATACCCCCATATCGTGCATATAGC
1 CACCCCATCTCACCCAGCTCATGTGCATCCCCCCACATCGTGCACATAGC
26475528 TAGAGTCATC
Statistics
Matches: 91, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
54 90 0.99
55 1 0.01
ACGTcount: A:0.26, C:0.42, G:0.11, T:0.20
Consensus pattern (54 bp):
CACCCCATCTCACCCAGCTCATGTGCATCCCCCCACATCGTGCACATAGCCGAA
Found at i:26479402 original size:21 final size:22
Alignment explanation
Indices: 26479370--26479423 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 22
26479360 AACAAGTTTT
*
26479370 AAAACT-ACTCAAAG-AAGTTC
1 AAAACTCATTCAAAGCAAGTTC
* *
26479390 AAAATTCATTC-AAGCAATTTC
1 AAAACTCATTCAAAGCAAGTTC
26479411 AAAACTCATTCAA
1 AAAACTCATTCAA
26479424 GTAATTTTGT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
20 8 0.30
21 18 0.67
22 1 0.04
ACGTcount: A:0.48, C:0.20, G:0.06, T:0.26
Consensus pattern (22 bp):
AAAACTCATTCAAAGCAAGTTC
Found at i:26479437 original size:21 final size:21
Alignment explanation
Indices: 26479387--26479430 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
26479377 CTCAAAGAAG
*
26479387 TTCAAAATTCATTCAAGCAAT
1 TTCAAAACTCATTCAAGCAAT
*
26479408 TTCAAAACTCATTCAAGTAAT
1 TTCAAAACTCATTCAAGCAAT
26479429 TT
1 TT
26479431 TGTAACTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.41, C:0.18, G:0.05, T:0.36
Consensus pattern (21 bp):
TTCAAAACTCATTCAAGCAAT
Found at i:26479565 original size:42 final size:42
Alignment explanation
Indices: 26479515--26479602 Score: 131
Period size: 42 Copynumber: 2.1 Consensus size: 42
26479505 GTTCAAAACA
* *
26479515 CATTCAAACAACTTCAAAGATCATTCAGGCAAATTCAAAGAT
1 CATTCAAACAACTTCAAAGATCACTCAAGCAAATTCAAAGAT
* * *
26479557 CATTCAAACAAGTTCAAGGATCACTCAAGCAAGTTCAAAGAT
1 CATTCAAACAACTTCAAAGATCACTCAAGCAAATTCAAAGAT
26479599 CATT
1 CATT
26479603 GAAGCAATTT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.43, C:0.22, G:0.11, T:0.24
Consensus pattern (42 bp):
CATTCAAACAACTTCAAAGATCACTCAAGCAAATTCAAAGAT
Found at i:26479607 original size:21 final size:21
Alignment explanation
Indices: 26479515--26479609 Score: 118
Period size: 21 Copynumber: 4.5 Consensus size: 21
26479505 GTTCAAAACA
* *
26479515 CATTCAAACAACTTCAAAGAT
1 CATTCAAGCAAGTTCAAAGAT
* *
26479536 CATTCAGGCAAATTCAAAGAT
1 CATTCAAGCAAGTTCAAAGAT
* *
26479557 CATTCAAACAAGTTCAAGGAT
1 CATTCAAGCAAGTTCAAAGAT
*
26479578 CACTCAAGCAAGTTCAAAGAT
1 CATTCAAGCAAGTTCAAAGAT
*
26479599 CATTGAAGCAA
1 CATTCAAGCAA
26479610 TTTTGATTTT
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 62 1.00
ACGTcount: A:0.44, C:0.21, G:0.13, T:0.22
Consensus pattern (21 bp):
CATTCAAGCAAGTTCAAAGAT
Found at i:26482778 original size:34 final size:35
Alignment explanation
Indices: 26482740--26482824 Score: 118
Period size: 34 Copynumber: 2.5 Consensus size: 35
26482730 ATATCAACAT
* * *
26482740 AAAAATCAACAGCCAAGCTGCTCTATTTTTCCT-C
1 AAAAATCAGCAGCCAAGCTGCTCTATTCTCCCTCC
* *
26482774 AAAAATCAGCAACCAAGCTGCTTTATTCTCCCTCC
1 AAAAATCAGCAGCCAAGCTGCTCTATTCTCCCTCC
26482809 AAAAATCAGCAGCCAA
1 AAAAATCAGCAGCCAA
26482825 AATCGTGCCT
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
34 28 0.64
35 16 0.36
ACGTcount: A:0.36, C:0.31, G:0.09, T:0.24
Consensus pattern (35 bp):
AAAAATCAGCAGCCAAGCTGCTCTATTCTCCCTCC
Found at i:26482853 original size:34 final size:34
Alignment explanation
Indices: 26482810--26482920 Score: 168
Period size: 34 Copynumber: 3.3 Consensus size: 34
26482800 TCTCCCTCCA
**
26482810 AAAATCAGCAGCCAAAATCGTGCCTTCAGCCTTC
1 AAAATCAGCAGCCAAAATCGCACCTTCAGCCTTC
* *
26482844 AAAATCAGCAGTCAAAATCGCACCTTTAGCCTTC
1 AAAATCAGCAGCCAAAATCGCACCTTCAGCCTTC
* *
26482878 AAATTCAGCAGCCAAAACCGCACCTTCAGCCTTC
1 AAAATCAGCAGCCAAAATCGCACCTTCAGCCTTC
26482912 AAAATCAGC
1 AAAATCAGC
26482921 TCCTTCTCCT
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 68 1.00
ACGTcount: A:0.35, C:0.32, G:0.13, T:0.20
Consensus pattern (34 bp):
AAAATCAGCAGCCAAAATCGCACCTTCAGCCTTC
Found at i:26498829 original size:20 final size:20
Alignment explanation
Indices: 26498804--26498849 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
26498794 ATTTGTCCCC
26498804 ATTTGACTTATTAGAGTATA
1 ATTTGACTTATTAGAGTATA
* *
26498824 ATTTGACTTATTGGAGTATG
1 ATTTGACTTATTAGAGTATA
26498844 ATTTGA
1 ATTTGA
26498850 GATTTAGAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.30, C:0.04, G:0.20, T:0.46
Consensus pattern (20 bp):
ATTTGACTTATTAGAGTATA
Found at i:26502313 original size:34 final size:33
Alignment explanation
Indices: 26502264--26502379 Score: 108
Period size: 32 Copynumber: 3.5 Consensus size: 33
26502254 TATCAACATC
* *
26502264 AAAATCAGTAACCAAGCTGCTATATTTTTCCTCA
1 AAAATCAGCAGCCAAGCTGCT-TATTTTTCCTCA
*
26502298 AAAATCAGCAGCCAAGCTACTT-TTTTTCCTCA
1 AAAATCAGCAGCCAAGCTGCTTATTTTTCCTCA
* * * * *
26502330 AAATTCAACAGCTAAGCTGCTCTATTCTCCCTCTA
1 AAAATCAGCAGCCAAGCTGCT-TATTTTTCCTC-A
* *
26502365 AAAATTAGTAGCCAA
1 AAAATCAGCAGCCAA
26502380 AATTGCACCT
Statistics
Matches: 65, Mismatches: 14, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
32 27 0.42
33 2 0.03
34 25 0.38
35 11 0.17
ACGTcount: A:0.34, C:0.26, G:0.09, T:0.30
Consensus pattern (33 bp):
AAAATCAGCAGCCAAGCTGCTTATTTTTCCTCA
Found at i:26502415 original size:34 final size:33
Alignment explanation
Indices: 26502377--26502508 Score: 158
Period size: 34 Copynumber: 3.9 Consensus size: 33
26502367 AATTAGTAGC
* *
26502377 CAAAATTGCACCTTTAACCTTCAAAATCAGTGGT
1 CAAAACTGCACCTTTAGCCTTCAAAATCAGT-GT
*
26502411 CAAAACTGCACCTTTAGCCTTCAAAATCAGCTGC
1 CAAAACTGCACCTTTAGCCTTCAAAATCAG-TGT
*
26502445 CAAAA-TCGAACCTTTAGCCTTCAAAATCAGTAGT
1 CAAAACT-GCACCTTTAGCCTTCAAAATCAGT-GT
** *
26502479 CAAAACAACACCTTCAGCCTTCAAAATCAG
1 CAAAACTGCACCTTTAGCCTTCAAAATCAG
26502509 CTCCTTCTCC
Statistics
Matches: 85, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
33 2 0.02
34 82 0.96
35 1 0.01
ACGTcount: A:0.37, C:0.28, G:0.11, T:0.24
Consensus pattern (33 bp):
CAAAACTGCACCTTTAGCCTTCAAAATCAGTGT
Found at i:26502458 original size:68 final size:68
Alignment explanation
Indices: 26502375--26502510 Score: 209
Period size: 68 Copynumber: 2.0 Consensus size: 68
26502365 AAAATTAGTA
* * * ** *
26502375 GCCAAAATTGCACCTTTAACCTTCAAAATCAGTGGTCAAAACTGCACCTTTAGCCTTCAAAATCA
1 GCCAAAATCGAACCTTTAACCTTCAAAATCAGTAGTCAAAACAACACCTTCAGCCTTCAAAATCA
26502440 GCT
66 GCT
*
26502443 GCCAAAATCGAACCTTTAGCCTTCAAAATCAGTAGTCAAAACAACACCTTCAGCCTTCAAAATCA
1 GCCAAAATCGAACCTTTAACCTTCAAAATCAGTAGTCAAAACAACACCTTCAGCCTTCAAAATCA
26502508 GCT
66 GCT
26502511 CCTTCTCCTC
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
68 61 1.00
ACGTcount: A:0.36, C:0.29, G:0.11, T:0.24
Consensus pattern (68 bp):
GCCAAAATCGAACCTTTAACCTTCAAAATCAGTAGTCAAAACAACACCTTCAGCCTTCAAAATCA
GCT
Found at i:26503833 original size:2 final size:2
Alignment explanation
Indices: 26503826--26503870 Score: 54
Period size: 2 Copynumber: 22.0 Consensus size: 2
26503816 TCCAAACCTC
* * *
26503826 TA TA TA TA TA TA TA TA TA TA TA TCA TA TA TA AA CA TA TA AA TA
1 TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA
26503869 TA
1 TA
26503871 ACCACCAGCC
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
2 35 0.95
3 2 0.05
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.42
Consensus pattern (2 bp):
TA
Found at i:26503967 original size:42 final size:42
Alignment explanation
Indices: 26503899--26504021 Score: 210
Period size: 42 Copynumber: 2.9 Consensus size: 42
26503889 AACTTTGTCT
*
26503899 CAACTCATGTGCACTCATACACCGCACATGGCTGGGTCAGCA
1 CAACTCATGTGCACTCCTACACCGCACATGGCTGGGTCAGCA
* * *
26503941 CAGCTCATGTGCACTCCTACATCGCACATGGCTAGGTCAGCA
1 CAACTCATGTGCACTCCTACACCGCACATGGCTGGGTCAGCA
26503983 CAACTCATGTGCACTCCTACACCGCACATGGCTGGGTCA
1 CAACTCATGTGCACTCCTACACCGCACATGGCTGGGTCA
26504022 TAATTATCAT
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 74 1.00
ACGTcount: A:0.24, C:0.34, G:0.21, T:0.20
Consensus pattern (42 bp):
CAACTCATGTGCACTCCTACACCGCACATGGCTGGGTCAGCA
Found at i:26505049 original size:33 final size:33
Alignment explanation
Indices: 26505001--26505081 Score: 117
Period size: 33 Copynumber: 2.4 Consensus size: 33
26504991 CCAGCTCTCG
*
26505001 TTTTCTCTCTTAAATTTCTAGCAAAACTCTTTCT
1 TTTTC-CTCTCAAATTTCTAGCAAAACTCTTTCT
* *
26505035 TTTTCCTCTCAAATTTGTAGTAAAACTCTTTCT
1 TTTTCCTCTCAAATTTCTAGCAAAACTCTTTCT
26505068 TTTTCCCTCTCAAA
1 TTTT-CCTCTCAAA
26505082 ATTTTGTAGC
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
33 29 0.67
34 14 0.33
ACGTcount: A:0.23, C:0.25, G:0.04, T:0.48
Consensus pattern (33 bp):
TTTTCCTCTCAAATTTCTAGCAAAACTCTTTCT
Found at i:26508759 original size:2 final size:2
Alignment explanation
Indices: 26508752--26508842 Score: 89
Period size: 2 Copynumber: 46.0 Consensus size: 2
26508742 ATTGCATAAG
*
26508752 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA TA TA -A TA -A
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * **
26508792 AA CGA -A TA CCN TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA -TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
26508835 CA TA TA TA
1 TA TA TA TA
26508843 AAAACGAATA
Statistics
Matches: 75, Mismatches: 9, Indels: 10
0.80 0.10 0.11
Matches are distributed among these distances:
1 3 0.04
2 71 0.95
3 1 0.01
ACGTcount: A:0.51, C:0.05, G:0.01, T:0.42
Consensus pattern (2 bp):
TA
Found at i:26508970 original size:37 final size:39
Alignment explanation
Indices: 26508875--26508974 Score: 127
Period size: 37 Copynumber: 2.6 Consensus size: 39
26508865 CACCCAGCTC
* *
26508875 ATGTGCAACCCCCACATCGCGCACATAGCTAGAGTCATT
1 ATGTGCAACCCCCACATCGTGCACATAGCTAGAGCCATT
* *
26508914 GTGTGCAA-CCCCACTTCGTGCACA-A-CTA-ATGCCATT
1 ATGTGCAACCCCCACATCGTGCACATAGCTAGA-GCCATT
26508950 ATGTGCAACCCCCACATCGTGCACA
1 ATGTGCAACCCCCACATCGTGCACA
26508975 GGCAATATCA
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
35 1 0.02
36 15 0.28
37 16 0.30
38 14 0.26
39 7 0.13
ACGTcount: A:0.27, C:0.35, G:0.17, T:0.21
Consensus pattern (39 bp):
ATGTGCAACCCCCACATCGTGCACATAGCTAGAGCCATT
Found at i:26513252 original size:37 final size:37
Alignment explanation
Indices: 26513139--26513243 Score: 192
Period size: 37 Copynumber: 2.8 Consensus size: 37
26513129 ACATACATCG
*
26513139 TCATCATGTGTGCACTCCCTACTCGCACACTCTATTA
1 TCATCATGTGTGCACTCCCTACTCGCACACTCTATCA
*
26513176 TCTTCATGTGTGCACTCCCTACTCGCACACTCTATCA
1 TCATCATGTGTGCACTCCCTACTCGCACACTCTATCA
26513213 TCATCATGTGTGCACTCCCTACTCGCACACT
1 TCATCATGTGTGCACTCCCTACTCGCACACT
26513244 TCAACATCAC
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.20, C:0.37, G:0.11, T:0.31
Consensus pattern (37 bp):
TCATCATGTGTGCACTCCCTACTCGCACACTCTATCA
Found at i:26517397 original size:82 final size:82
Alignment explanation
Indices: 26517296--26517455 Score: 284
Period size: 82 Copynumber: 2.0 Consensus size: 82
26517286 TCCGCCCAAG
26517296 AGCTTGGAAGAGGAAGGAAGGGACTGCTCCGTTGCTTCGTGATCCGGAGTGAAGTGCACCTCTTA
1 AGCTTGGAAGAGGAAGGAAGGGACTGCTCCGTTGCTTCGTGATCCGGAGTGAAGTGCACCTCTTA
26517361 CAGAGTGAAGGGGGGGA
66 CAGAGTGAAGGGGGGGA
* * *
26517378 AGCTTGGAAGAGGAGGGAAGGGACTGCTCCGTTGCTTTGTGATCCGGAGTGAAGTGCACCTCTTG
1 AGCTTGGAAGAGGAAGGAAGGGACTGCTCCGTTGCTTCGTGATCCGGAGTGAAGTGCACCTCTTA
*
26517443 CTGAGTGAAGGGG
66 CAGAGTGAAGGGG
26517456 TAGGTATGAT
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
82 74 1.00
ACGTcount: A:0.23, C:0.17, G:0.39, T:0.21
Consensus pattern (82 bp):
AGCTTGGAAGAGGAAGGAAGGGACTGCTCCGTTGCTTCGTGATCCGGAGTGAAGTGCACCTCTTA
CAGAGTGAAGGGGGGGA
Found at i:26524058 original size:43 final size:43
Alignment explanation
Indices: 26523997--26524156 Score: 148
Period size: 43 Copynumber: 3.7 Consensus size: 43
26523987 CGGCTATGTT
* *
26523997 CGAGTAGGGAGTGCGCATAAGC-CGAG-GATGACCCGGTTATGCA
1 CGAGTAGGGAGTGTGCATAA-CTCG-GTGATGACCCAGTTATGCA
**
26524040 CGAGTAGGGAGTGTGCATAACTCGGTGATGACCCAGTTATGTG
1 CGAGTAGGGAGTGTGCATAACTCGGTGATGACCCAGTTATGCA
* * ** **
26524083 CGAGTAGGGAGT-TCGCATAACCCGGTGATGACTCAGCCATGTG
1 CGAGTAGGGAGTGT-GCATAACTCGGTGATGACCCAGTTATGCA
* *
26524126 CGAGTAGGGAGTGCGCATGAGCT-GGTGATGA
1 CGAGTAGGGAGTGTGCAT-AACTCGGTGATGA
26524157 TGATGATGAG
Statistics
Matches: 101, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
42 3 0.03
43 96 0.95
44 2 0.02
ACGTcount: A:0.24, C:0.19, G:0.37, T:0.21
Consensus pattern (43 bp):
CGAGTAGGGAGTGTGCATAACTCGGTGATGACCCAGTTATGCA
Found at i:26524136 original size:86 final size:86
Alignment explanation
Indices: 26523991--26524156 Score: 201
Period size: 86 Copynumber: 1.9 Consensus size: 86
26523981 TTGACTCGGC
* * * ** *
26523991 TATGTTCGAGTAGGGAGTGCGCATAAGCCGAGGATGACCCGGTTATGCACGAGTAGGGAGTGTGC
1 TATGTGCGAGTAGGGAGTGCGCATAACCCGAGGATGACCCAGCCATGCACGAGTAGGGAGTGCGC
26524056 AT-AACTCGGTGATGACCCAGT
66 ATGAACT-GGTGATGACCCAGT
* * **
26524077 TATGTGCGAGTAGGGAGTTCGCATAACCCG-GTGATGACTCAGCCATGTGCGAGTAGGGAGTGCG
1 TATGTGCGAGTAGGGAGTGCGCATAACCCGAG-GATGACCCAGCCATGCACGAGTAGGGAGTGCG
*
26524141 CATGAGCTGGTGATGA
65 CATGAACTGGTGATGA
26524157 TGATGATGAG
Statistics
Matches: 67, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
85 1 0.01
86 63 0.94
87 3 0.04
ACGTcount: A:0.23, C:0.18, G:0.36, T:0.22
Consensus pattern (86 bp):
TATGTGCGAGTAGGGAGTGCGCATAACCCGAGGATGACCCAGCCATGCACGAGTAGGGAGTGCGC
ATGAACTGGTGATGACCCAGT
Found at i:26524186 original size:22 final size:20
Alignment explanation
Indices: 26524142--26524184 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
26524132 GGGAGTGCGC
26524142 ATGAGCTGGTGATGATGATG
1 ATGAGCTGGTGATGATGATG
26524162 ATGAGCTGGTGA-GATGATG
1 ATGAGCTGGTGATGATGATG
26524181 ATGA
1 ATGA
26524185 TGGGTATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 11 0.48
20 12 0.52
ACGTcount: A:0.28, C:0.05, G:0.40, T:0.28
Consensus pattern (20 bp):
ATGAGCTGGTGATGATGATG
Found at i:26524208 original size:2 final size:2
Alignment explanation
Indices: 26524197--26524233 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
26524187 GGTATATACG
* *
26524197 TA TA TG TA TA TA TA TA TA TA TA TA TA TA TA TA CA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
26524234 GTAAATGTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (2 bp):
TA
Found at i:26530448 original size:37 final size:37
Alignment explanation
Indices: 26530395--26530496 Score: 159
Period size: 37 Copynumber: 2.8 Consensus size: 37
26530385 ATTTGTGCAA
* *
26530395 TCCCTACTCACTCACTTCAACATCATCATGTGTACAC
1 TCCCTACTCGCACACTTCAACATCATCATGTGTACAC
* * *
26530432 TCCTTACTCGCACACTTTAACATCATCATGTGTGCAC
1 TCCCTACTCGCACACTTCAACATCATCATGTGTACAC
26530469 TCCCTACTCGCACACTTCAACATCATCA
1 TCCCTACTCGCACACTTCAACATCATCA
26530497 CACAACATTA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.26, C:0.37, G:0.07, T:0.29
Consensus pattern (37 bp):
TCCCTACTCGCACACTTCAACATCATCATGTGTACAC
Found at i:26541677 original size:21 final size:21
Alignment explanation
Indices: 26541651--26541693 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 21
26541641 ATAGATGGGG
26541651 TATTATCAATT-TCACAAGCCC
1 TATTATCAATTAT-ACAAGCCC
26541672 TATTATCAATTATACAAGCCC
1 TATTATCAATTATACAAGCCC
26541693 T
1 T
26541694 GTTGCAATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 20 0.95
22 1 0.05
ACGTcount: A:0.35, C:0.26, G:0.05, T:0.35
Consensus pattern (21 bp):
TATTATCAATTATACAAGCCC
Found at i:26542686 original size:22 final size:22
Alignment explanation
Indices: 26542656--26542700 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
26542646 TAGAAGAATC
* * *
26542656 TTTGTTACAATGGAAATCCATT
1 TTTGCTACAATGAAAATCAATT
26542678 TTTGCTACAATGAAAATCAATT
1 TTTGCTACAATGAAAATCAATT
26542700 T
1 T
26542701 GGAAGCGATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.40
Consensus pattern (22 bp):
TTTGCTACAATGAAAATCAATT
Found at i:26542891 original size:35 final size:36
Alignment explanation
Indices: 26542809--26542892 Score: 120
Period size: 36 Copynumber: 2.4 Consensus size: 36
26542799 TCTCACCAGC
26542809 TCATGTGCACTCCCACACCGCACATAGCTAGAATCA
1 TCATGTGCACTCCCACACCGCACATAGCTAGAATCA
26542845 TCATGTGCACTCCCACACCGCACA-AGGC-A-ATATCA
1 TCATGTGCACTCCCACACCGCACATA-GCTAGA-ATCA
*
26542880 TCATGTACACTCC
1 TCATGTGCACTCC
26542893 ATACCATACC
Statistics
Matches: 45, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
34 1 0.02
35 18 0.40
36 26 0.58
ACGTcount: A:0.30, C:0.37, G:0.13, T:0.20
Consensus pattern (36 bp):
TCATGTGCACTCCCACACCGCACATAGCTAGAATCA
Found at i:26544482 original size:1 final size:1
Alignment explanation
Indices: 26544478--26544506 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
26544468 AGAGAATTGC
26544478 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
26544507 GAATGCTTGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:26554801 original size:46 final size:45
Alignment explanation
Indices: 26554703--26554877 Score: 195
Period size: 43 Copynumber: 4.0 Consensus size: 45
26554693 GTCACAACTA
*
26554703 GGTCATCATCATTGGCTTATGCGCACTCCCTACTC-CAACATAGCCG
1 GGTCATCATCATCGGCTTATGCGCACTCCCTACTCGC-ACATAG-CG
26554749 GG---TCATCATCGGCTTATGCGCACTCCCTACTCGCACATAGTCG
1 GGTCATCATCATCGGCTTATGCGCACTCCCTACTCGCACATAG-CG
* * *
26554792 GGTCATCATCATCGGCTTATGTGCACTCCCTACTAGCACATAGCTA
1 GGTCATCATCATCGGCTTATGCGCACTCCCTACTCGCACATAGC-G
* *
26554838 GGTCATCATCA---GCTCATGTGCACTCCC-ACATCGCACATAG
1 GGTCATCATCATCGGCTTATGCGCACTCCCTAC-TCGCACATAG
26554878 GTAGGTCATC
Statistics
Matches: 116, Mismatches: 7, Indels: 15
0.84 0.05 0.11
Matches are distributed among these distances:
42 2 0.02
43 63 0.54
44 1 0.01
45 1 0.01
46 49 0.42
ACGTcount: A:0.22, C:0.34, G:0.18, T:0.26
Consensus pattern (45 bp):
GGTCATCATCATCGGCTTATGCGCACTCCCTACTCGCACATAGCG
Found at i:26554885 original size:89 final size:88
Alignment explanation
Indices: 26554701--26554889 Score: 247
Period size: 89 Copynumber: 2.1 Consensus size: 88
26554691 TCGTCACAAC
* * * *
26554701 TAGGTCATCATCATTGGCTTATGCGCACTCCCTACTCCAACATAGCCGGGTCATCATCGGCTTAT
1 TAGGTCATCATCATCGGCTTATGCGCACTCCCTACTCCAACATAGCCAGGTCATCATCAGCTCAT
26554766 GCGCACTCCCTACTCGCACATAG
66 GCGCACTCCCTACTCGCACATAG
* * * *
26554789 TCGGGTCATCATCATCGGCTTATGTGCACTCCCTACTAGC-ACATAGCTAGGTCATCATCAGCTC
1 T-AGGTCATCATCATCGGCTTATGCGCACTCCCTACT-CCAACATAGCCAGGTCATCATCAGCTC
*
26554853 ATGTGCACTCCC-ACATCGCACATAGG
64 ATGCGCACTCCCTAC-TCGCACATA-G
26554879 TAGGTCATCAT
1 TAGGTCATCAT
26554890 TATCACACAA
Statistics
Matches: 87, Mismatches: 10, Indels: 7
0.84 0.10 0.07
Matches are distributed among these distances:
88 3 0.03
89 81 0.93
90 3 0.03
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.26
Consensus pattern (88 bp):
TAGGTCATCATCATCGGCTTATGCGCACTCCCTACTCCAACATAGCCAGGTCATCATCAGCTCAT
GCGCACTCCCTACTCGCACATAG
Found at i:26556599 original size:19 final size:21
Alignment explanation
Indices: 26556560--26556600 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 21
26556550 CATTTCTCCT
26556560 TATTTTCCATGGTTAAATTCA
1 TATTTTCCATGGTTAAATTCA
*
26556581 TATTTT-CATGG-TGAATTCA
1 TATTTTCCATGGTTAAATTCA
26556600 T
1 T
26556601 GGCTAGCCGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 8 0.42
20 5 0.26
21 6 0.32
ACGTcount: A:0.27, C:0.12, G:0.12, T:0.49
Consensus pattern (21 bp):
TATTTTCCATGGTTAAATTCA
Found at i:26561217 original size:12 final size:12
Alignment explanation
Indices: 26561199--26561240 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
26561189 AAAGAAAATT
26561199 ATTTTTCTTTTC
1 ATTTTTCTTTTC
* **
26561211 TTTTTTCCCTT-
1 ATTTTTCTTTTC
26561222 ATTTTTCTTTTC
1 ATTTTTCTTTTC
26561234 ATTTTTC
1 ATTTTTC
26561241 CCTTTTTCCT
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
11 8 0.35
12 15 0.65
ACGTcount: A:0.07, C:0.19, G:0.00, T:0.74
Consensus pattern (12 bp):
ATTTTTCTTTTC
Found at i:26561223 original size:23 final size:23
Alignment explanation
Indices: 26561197--26561244 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
26561187 GAAAAGAAAA
*
26561197 TTATTTTTCTTTTCTTTTTTCCC
1 TTATTTTTCTTTTCATTTTTCCC
26561220 TTATTTTTCTTTTCATTTTTCCC
1 TTATTTTTCTTTTCATTTTTCCC
26561243 TT
1 TT
26561245 TTTCCTTAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.06, C:0.21, G:0.00, T:0.73
Consensus pattern (23 bp):
TTATTTTTCTTTTCATTTTTCCC
Found at i:26561336 original size:47 final size:48
Alignment explanation
Indices: 26561246--26561337 Score: 134
Period size: 47 Copynumber: 1.9 Consensus size: 48
26561236 TTTTCCCTTT
** *
26561246 TTCCTTAGCTCAAATTTTTGAATTTCTTTTTTCTTTTTTTCTTTTTTG
1 TTCCTTAGCTCAAATTTTTGAATTTCAGTTTTCTTTTTGTCTTTTTTG
26561294 TTCCTTAGCTCAAA-TTTTGAATTT-AGTTTTCTTTTCTGTCTTTT
1 TTCCTTAGCTCAAATTTTTGAATTTCAGTTTTCTTTT-TGTCTTTT
26561338 CCTTTTTTTG
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
46 9 0.22
47 17 0.43
48 14 0.35
ACGTcount: A:0.14, C:0.15, G:0.08, T:0.63
Consensus pattern (48 bp):
TTCCTTAGCTCAAATTTTTGAATTTCAGTTTTCTTTTTGTCTTTTTTG
Found at i:26561943 original size:35 final size:35
Alignment explanation
Indices: 26561904--26562006 Score: 89
Period size: 35 Copynumber: 3.1 Consensus size: 35
26561894 TGTAAAGACG
26561904 AAGTTGCATAATAAGATTGAAGATGATTTTATTGC
1 AAGTTGCATAATAAGATTGAAGATGATTTTATTGC
* * **
26561939 AAGTT-C--ACTAAG---GAA-A--ATTGTAAAGAC
1 AAGTTGCATAATAAGATTGAAGATGATTTTATTG-C
26561966 GAAGTTGCATAATAAGATTGAAGATGATTTTATTGC
1 -AAGTTGCATAATAAGATTGAAGATGATTTTATTGC
26562002 AAGTT
1 AAGTT
26562007 CACTAATCTT
Statistics
Matches: 49, Mismatches: 8, Indels: 22
0.62 0.10 0.28
Matches are distributed among these distances:
26 6 0.12
27 1 0.02
28 6 0.12
29 4 0.08
31 5 0.10
32 5 0.10
34 4 0.08
35 11 0.22
36 1 0.02
37 6 0.12
ACGTcount: A:0.40, C:0.07, G:0.20, T:0.33
Consensus pattern (35 bp):
AAGTTGCATAATAAGATTGAAGATGATTTTATTGC
Found at i:26561985 original size:63 final size:63
Alignment explanation
Indices: 26561886--26562012 Score: 254
Period size: 63 Copynumber: 2.0 Consensus size: 63
26561876 ATTTTCAATT
26561886 AGGAAAATTGTAAAGACGAAGTTGCATAATAAGATTGAAGATGATTTTATTGCAAGTTCACTA
1 AGGAAAATTGTAAAGACGAAGTTGCATAATAAGATTGAAGATGATTTTATTGCAAGTTCACTA
26561949 AGGAAAATTGTAAAGACGAAGTTGCATAATAAGATTGAAGATGATTTTATTGCAAGTTCACTA
1 AGGAAAATTGTAAAGACGAAGTTGCATAATAAGATTGAAGATGATTTTATTGCAAGTTCACTA
26562012 A
1 A
26562013 TCTTTTACAT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 64 1.00
ACGTcount: A:0.42, C:0.08, G:0.20, T:0.30
Consensus pattern (63 bp):
AGGAAAATTGTAAAGACGAAGTTGCATAATAAGATTGAAGATGATTTTATTGCAAGTTCACTA
Found at i:26564153 original size:35 final size:33
Alignment explanation
Indices: 26564102--26564217 Score: 94
Period size: 35 Copynumber: 3.5 Consensus size: 33
26564092 CAAACTAAAA
* *
26564102 CTCAAAATGGATTTTCAAAGGCTCAACCACAAC
1 CTCACAATGGTTTTTCAAAGGCTCAACCACAAC
** * * *
26564135 CTTTCACAATGGTTTTTCACGGGTTCAACGAAAAC
1 C--TCACAATGGTTTTTCAAAGGCTCAACCACAAC
*
26564170 C-CA-AAGTGG-TTTTCAAAGGCTAAACCACAAC
1 CTCACAA-TGGTTTTTCAAAGGCTCAACCACAAC
26564201 CTACAACAATGGTTTTT
1 CT-C-ACAATGGTTTTT
26564218 ATCGAGATCA
Statistics
Matches: 62, Mismatches: 13, Indels: 14
0.70 0.15 0.16
Matches are distributed among these distances:
31 19 0.31
32 5 0.08
33 2 0.03
34 4 0.06
35 32 0.52
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (33 bp):
CTCACAATGGTTTTTCAAAGGCTCAACCACAAC
Found at i:26564154 original size:67 final size:66
Alignment explanation
Indices: 26564052--26564217 Score: 183
Period size: 67 Copynumber: 2.5 Consensus size: 66
26564042 TGGCTTTTAC
* * * * * * * *
26564052 AAGGCTCAGCCAAAACCTTTTACATTAGTTGTTCACGGG-CCAAACTAAAACTCAAAATGGATTT
1 AAGGCTCAACCACAACCTTTCACAATGGTTTTTCACGGGTCC-AACGAAAACCCAAAATGG-TTT
26564116 TCA
64 TCA
* *
26564119 AAGGCTCAACCACAACCTTTCACAATGGTTTTTCACGGGTTCAACGAAAACCCAAAGTGGTTTTC
1 AAGGCTCAACCACAACCTTTCACAATGGTTTTTCACGGGTCCAACGAAAACCCAAAATGGTTTTC
26564184 A
66 A
* *
26564185 AAGGCTAAACCACAACC-TACAACAATGGTTTTT
1 AAGGCTCAACCACAACCTTTC-ACAATGGTTTTT
26564218 ATCGAGATCA
Statistics
Matches: 85, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
65 2 0.02
66 34 0.40
67 48 0.56
68 1 0.01
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.26
Consensus pattern (66 bp):
AAGGCTCAACCACAACCTTTCACAATGGTTTTTCACGGGTCCAACGAAAACCCAAAATGGTTTTC
A
Found at i:26564229 original size:66 final size:66
Alignment explanation
Indices: 26564098--26564238 Score: 171
Period size: 66 Copynumber: 2.1 Consensus size: 66
26564088 GGGCCAAACT
* * * * *
26564098 AAAACTCAAAATGGATTTTCAAAGGCTCAACCACAACCTTTCACAATGGTTTTTCACGGGTTCAA
1 AAAACCCAAAATGGATTTTCAAAGGCTAAACCACAACCTTACACAATGGTTTTTCACGAGATCAA
26564163 C
66 C
*
26564164 GAAAACCCAAAGTGG-TTTTCAAAGGCTAAACCACAACC-TACAACAATGGTTTTT-ATCGAGAT
1 -AAAACCCAAAATGGATTTTCAAAGGCTAAACCACAACCTTAC-ACAATGGTTTTTCA-CGAGAT
26564226 CAAC
63 CAAC
*
26564230 CAAACCCAA
1 AAAACCCAA
26564239 CAACCAACTT
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
65 11 0.17
66 42 0.65
67 12 0.18
ACGTcount: A:0.38, C:0.25, G:0.13, T:0.23
Consensus pattern (66 bp):
AAAACCCAAAATGGATTTTCAAAGGCTAAACCACAACCTTACACAATGGTTTTTCACGAGATCAA
C
Found at i:26565965 original size:19 final size:20
Alignment explanation
Indices: 26565941--26565978 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
26565931 CTATAAATAC
26565941 CTTGAA-TTTCCAGCAGCTT
1 CTTGAATTTTCCAGCAGCTT
26565960 CTTGAATTTTCCAGCAGCT
1 CTTGAATTTTCCAGCAGCT
26565979 GGTCTTCTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.21, C:0.26, G:0.16, T:0.37
Consensus pattern (20 bp):
CTTGAATTTTCCAGCAGCTT
Found at i:26566821 original size:43 final size:43
Alignment explanation
Indices: 26566772--26566882 Score: 152
Period size: 43 Copynumber: 2.6 Consensus size: 43
26566762 ATTGACTCGA
* **
26566772 CTATGTGCGAGTAGGGAGTGCGCATAAGCCGAG-GATGACCTGG
1 CTATGTGCGAGTAGGGAGTGCGCATAACCCG-GTGATGACCCAG
*
26566815 TTATGTGCGAGTAGGGAGTGCGCATAACCCGGTGATGACCCAG
1 CTATGTGCGAGTAGGGAGTGCGCATAACCCGGTGATGACCCAG
* *
26566858 CCATGTGCGAGTAAGGAGTGCGCAT
1 CTATGTGCGAGTAGGGAGTGCGCAT
26566883 GAGCTAGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
42 1 0.02
43 59 0.98
ACGTcount: A:0.23, C:0.20, G:0.37, T:0.20
Consensus pattern (43 bp):
CTATGTGCGAGTAGGGAGTGCGCATAACCCGGTGATGACCCAG
Found at i:26566893 original size:43 final size:43
Alignment explanation
Indices: 26566774--26566895 Score: 147
Period size: 43 Copynumber: 2.8 Consensus size: 43
26566764 TGACTCGACT
** **
26566774 ATGTGCGAGTAGGGAGTGCGCATAAGCCGAG-GATGACCTGGTT
1 ATGTGCGAGTAGGGAGTGCGCATAAGCC-AGTGATGACCCAGCC
* *
26566817 ATGTGCGAGTAGGGAGTGCGCATAACCCGGTGATGACCCAGCC
1 ATGTGCGAGTAGGGAGTGCGCATAAGCCAGTGATGACCCAGCC
* * *
26566860 ATGTGCGAGTAAGGAGTGCGCATGAGCTAGTGATGA
1 ATGTGCGAGTAGGGAGTGCGCATAAGCCAGTGATGA
26566896 TGATGATGGG
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
42 1 0.01
43 66 0.99
ACGTcount: A:0.25, C:0.18, G:0.38, T:0.20
Consensus pattern (43 bp):
ATGTGCGAGTAGGGAGTGCGCATAAGCCAGTGATGACCCAGCC
Found at i:26566964 original size:2 final size:2
Alignment explanation
Indices: 26566918--26566952 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
26566908 TATATATATA
26566918 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
26566953 AAATATGTGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:26567308 original size:21 final size:21
Alignment explanation
Indices: 26567284--26567323 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
26567274 TTCTAGGTTG
*
26567284 CAATTTCGCTGCAGCGAGATT
1 CAATCTCGCTGCAGCGAGATT
* *
26567305 CAATCTCTCTGTAGCGAGA
1 CAATCTCGCTGCAGCGAGA
26567324 AACATTCTGT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (21 bp):
CAATCTCGCTGCAGCGAGATT
Found at i:26567575 original size:22 final size:21
Alignment explanation
Indices: 26567548--26567612 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 21
26567538 AATTCCAATG
26567548 TCGCTGCAACGAAAATTCATT
1 TCGCTGCAACGAAAATTCATT
* * *
26567569 CTCGCTGAAACGAAAATGCCTT
1 -TCGCTGCAACGAAAATTCATT
* *
26567591 TCCGCTGCAGCGAAGATTCATT
1 T-CGCTGCAACGAAAATTCATT
26567613 GTCGTATTTG
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
21 1 0.03
22 33 0.97
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (21 bp):
TCGCTGCAACGAAAATTCATT
Found at i:26569243 original size:20 final size:20
Alignment explanation
Indices: 26569215--26569253 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26569205 CTTCAAGCAC
* *
26569215 TATTCTCAATTATCATCAAG
1 TATTATCAATCATCATCAAG
26569235 TATTATCAATCATCATCAA
1 TATTATCAATCATCATCAA
26569254 ACATTCATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.21, G:0.03, T:0.38
Consensus pattern (20 bp):
TATTATCAATCATCATCAAG
Found at i:26574419 original size:32 final size:31
Alignment explanation
Indices: 26574382--26574488 Score: 99
Period size: 32 Copynumber: 3.3 Consensus size: 31
26574372 TTTTACACTA
* *
26574382 GTTTTTCGTGGGCTAAACTAAAACCCAAAGTG
1 GTTTTTCATGGGCTCAAC-AAAACCCAAAGTG
**
26574414 GTTTTTCAAAGGCTCAACAACAACCTTTCACAA-TG
1 GTTTTTCATGGGCTCAACAA-AACC---CA-AAGTG
*
26574449 GTTTTTCATGGGCTCAACCAAAATCCAAAGTG
1 GTTTTTCATGGGCTCAA-CAAAACCCAAAGTG
26574481 GTTTTTCA
1 GTTTTTCA
26574489 AAAGCTCAAC
Statistics
Matches: 61, Mismatches: 7, Indels: 14
0.74 0.09 0.17
Matches are distributed among these distances:
31 4 0.07
32 30 0.49
35 22 0.36
36 5 0.08
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (31 bp):
GTTTTTCATGGGCTCAACAAAACCCAAAGTG
Found at i:26574477 original size:67 final size:67
Alignment explanation
Indices: 26574355--26574521 Score: 219
Period size: 67 Copynumber: 2.5 Consensus size: 67
26574345 TGGCTTTTAT
* * * * *
26574355 AAGGCTCAACCAA-AACCTTTTACACTAGTTTTTCGTGGGCTAAACTAAAACCCAAAGTGGTTTT
1 AAGGCTCAA-CAACAACCTTTCACAATGGTTTTTCATGGGCTAAACCAAAACCCAAAGTGGTTTT
26574419 TCA
65 TCA
* *
26574422 AAGGCTCAACAACAACCTTTCACAATGGTTTTTCATGGGCTCAACCAAAATCCAAAGTGGTTTTT
1 AAGGCTCAACAACAACCTTTCACAATGGTTTTTCATGGGCTAAACCAAAACCCAAAGTGGTTTTT
26574487 CA
66 CA
* * **
26574489 AAAGCTCAACCACAACCTACCACAATGGTTTTT
1 AAGGCTCAACAACAACCTTTCACAATGGTTTTT
26574522 ACCAAGATCA
Statistics
Matches: 88, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
66 3 0.03
67 85 0.97
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.28
Consensus pattern (67 bp):
AAGGCTCAACAACAACCTTTCACAATGGTTTTTCATGGGCTAAACCAAAACCCAAAGTGGTTTTT
CA
Found at i:26574496 original size:32 final size:32
Alignment explanation
Indices: 26574392--26574500 Score: 96
Period size: 32 Copynumber: 3.3 Consensus size: 32
26574382 GTTTTTCGTG
* * *
26574392 GGCTAAACTAAAACCCAAAGTGGTTTTTCAAA
1 GGCTCAACCAAAATCCAAAGTGGTTTTTCAAA
* **
26574424 GGCTCAA-CAACAACCTTTCACAA-TGGTTTTTCATG
1 GGCTCAACCAA-AA---TCCA-AAGTGGTTTTTCAAA
26574459 GGCTCAACCAAAATCCAAAGTGGTTTTTCAAA
1 GGCTCAACCAAAATCCAAAGTGGTTTTTCAAA
*
26574491 AGCTCAACCA
1 GGCTCAACCA
26574501 CAACCTACCA
Statistics
Matches: 60, Mismatches: 10, Indels: 14
0.71 0.12 0.17
Matches are distributed among these distances:
31 4 0.07
32 30 0.50
35 21 0.35
36 5 0.08
ACGTcount: A:0.36, C:0.24, G:0.15, T:0.26
Consensus pattern (32 bp):
GGCTCAACCAAAATCCAAAGTGGTTTTTCAAA
Found at i:26574533 original size:67 final size:66
Alignment explanation
Indices: 26574401--26574543 Score: 189
Period size: 67 Copynumber: 2.1 Consensus size: 66
26574391 GGGCTAAACT
* ** * *
26574401 AAAACCCAAAGTGGTTTTTCAAAGGCTCAACAACAACCTTTCACAATGGTTTTTCATGGGCTCAA
1 AAAACCCAAAGTGGTTTTTCAAAAGCTCAACAACAACCTACCACAATGGTTTTTCA-GAGATCAA
26574466 CC
65 CC
* *
26574468 AAAATCCAAAGTGGTTTTTCAAAAGCTCAACCACAACCTACCACAATGGTTTTTACCA-AGATCA
1 AAAACCCAAAGTGGTTTTTCAAAAGCTCAACAACAACCTACCACAATGGTTTTT--CAGAGATCA
26574532 ACC
64 ACC
26574535 AAAACCCAA
1 AAAACCCAA
26574544 CAACCAACTT
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
67 64 0.97
69 2 0.03
ACGTcount: A:0.38, C:0.27, G:0.12, T:0.24
Consensus pattern (66 bp):
AAAACCCAAAGTGGTTTTTCAAAAGCTCAACAACAACCTACCACAATGGTTTTTCAGAGATCAAC
C
Found at i:26576942 original size:25 final size:25
Alignment explanation
Indices: 26576914--26576988 Score: 105
Period size: 25 Copynumber: 3.0 Consensus size: 25
26576904 GAACCTGAGT
26576914 ATTTCTAGACTATTATGGACTTTGC
1 ATTTCTAGACTATTATGGACTTTGC
* ** *
26576939 ATTTCTAGACTATTATGAACTCGAGT
1 ATTTCTAGACTATTATGGACT-TTGC
26576965 ATTTCTAGACTATTATGGACTTTG
1 ATTTCTAGACTATTATGGACTTTG
26576989 TCTTAGTGTC
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
25 21 0.50
26 21 0.50
ACGTcount: A:0.27, C:0.15, G:0.16, T:0.43
Consensus pattern (25 bp):
ATTTCTAGACTATTATGGACTTTGC
Found at i:26576975 original size:26 final size:26
Alignment explanation
Indices: 26576902--26576981 Score: 101
Period size: 26 Copynumber: 3.1 Consensus size: 26
26576892 TTACGTTTTC
26576902 ATGAAC-CTGAGTATTTCTAGACTATT
1 ATGAACTC-GAGTATTTCTAGACTATT
* ** *
26576928 ATGGACT-TTGCATTTCTAGACTATT
1 ATGAACTCGAGTATTTCTAGACTATT
26576953 ATGAACTCGAGTATTTCTAGACTATT
1 ATGAACTCGAGTATTTCTAGACTATT
26576979 ATG
1 ATG
26576982 GACTTTGTCT
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
25 21 0.48
26 23 0.52
ACGTcount: A:0.29, C:0.15, G:0.16, T:0.40
Consensus pattern (26 bp):
ATGAACTCGAGTATTTCTAGACTATT
Found at i:26578103 original size:37 final size:36
Alignment explanation
Indices: 26578062--26578162 Score: 107
Period size: 37 Copynumber: 2.8 Consensus size: 36
26578052 ATGATATTGC
26578062 CTATGCGCGATGTGAGGGATGCACATGATGGAAT-TAG
1 CTATGCGCGATGTG-GGGATGCACATGAT-GAATCTAG
* * * *
26578099 CTATGCACGATGTGGGGGATGCACACGATGACTCTGG
1 CTATGCGCGATGT-GGGGATGCACATGATGAATCTAG
*
26578136 CTATGTGCGATGT-GGGAGTGCACATGA
1 CTATGCGCGATGTGGGGA-TGCACATGA
26578163 GCTGGGTAAG
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
35 4 0.07
36 11 0.20
37 38 0.70
38 1 0.02
ACGTcount: A:0.24, C:0.17, G:0.36, T:0.24
Consensus pattern (36 bp):
CTATGCGCGATGTGGGGATGCACATGATGAATCTAG
Found at i:26591429 original size:13 final size:13
Alignment explanation
Indices: 26591411--26591436 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26591401 GAGTGTGCAG
26591411 AAAATTAATTTAT
1 AAAATTAATTTAT
26591424 AAAATTAATTTAT
1 AAAATTAATTTAT
26591437 TAACTCTCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
AAAATTAATTTAT
Found at i:26593991 original size:13 final size:13
Alignment explanation
Indices: 26593973--26593997 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26593963 CATTTTGAAC
26593973 ATTTCATAATTAT
1 ATTTCATAATTAT
26593986 ATTTCATAATTA
1 ATTTCATAATTA
26593998 CTTGAGAAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (13 bp):
ATTTCATAATTAT
Found at i:26600726 original size:28 final size:28
Alignment explanation
Indices: 26600669--26600726 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
26600659 TTTCGAGCAT
* *
26600669 AAGGGCAAAATAGTCATTTTGCCACTCC
1 AAGGGCAAAATAGTAATTTTACCACTCC
*
26600697 AAGGGCAAAATTGTAATTTTACACAC-CC
1 AAGGGCAAAATAGTAATTTTAC-CACTCC
26600725 AA
1 AA
26600727 CACTTGTCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 23 0.88
29 3 0.12
ACGTcount: A:0.38, C:0.22, G:0.16, T:0.24
Consensus pattern (28 bp):
AAGGGCAAAATAGTAATTTTACCACTCC
Found at i:26619280 original size:36 final size:36
Alignment explanation
Indices: 26619202--26619292 Score: 103
Period size: 36 Copynumber: 2.5 Consensus size: 36
26619192 CTCACCCAGC
* * *
26619202 TCATGTGCACTCCCACACCGCACACAGCCAAAGTCA
1 TCATGTGCACCCCCACATCGCACACAGCCAAAGCCA
* * *
26619238 TCATGTGCACCCCCACATCGCACATAGCTAATGCCA
1 TCATGTGCACCCCCACATCGCACACAGCCAAAGCCA
*
26619274 -CTATGTGCTCCCCCACATC
1 TC-ATGTGCACCCCCACATC
26619293 ACGCACAGGC
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
35 1 0.02
36 46 0.98
ACGTcount: A:0.26, C:0.42, G:0.13, T:0.19
Consensus pattern (36 bp):
TCATGTGCACCCCCACATCGCACACAGCCAAAGCCA
Found at i:26629551 original size:56 final size:56
Alignment explanation
Indices: 26629358--26629578 Score: 220
Period size: 54 Copynumber: 4.0 Consensus size: 56
26629348 TACCACCACA
* * * * * * * ***
26629358 TCTCATCCAGCTCATGTGCATCCCCCCACATCGTGTACAT-AGC-TAGACACCCCA
1 TCTCACCCAACTCATGTGCATCCCCCCACATCGTGCACATAACCGGAGTCATCGTG
* * * * *
26629412 TCCCACCCAGCTCATGTGCATCCCCCCACATCGTGCACATAGCC-GA-ACATTC-TA
1 TCTCACCCAACTCATGTGCATCCCCCCACATCGTGCACATAACCGGAGTCA-TCGTG
*
26629466 TCTCACCCAACTC-TAGTGCATCCCCCCACATCGTCCACATAACCGGAGTCATCGTG
1 TCTCACCCAACTCAT-GTGCATCCCCCCACATCGTGCACATAACCGGAGTCATCGTG
* *
26629522 TCTCACCCAACTCATGTACATCCCCCCACATCATGCACATAACCGGAGTCATCGTG
1 TCTCACCCAACTCATGTGCATCCCCCCACATCGTGCACATAACCGGAGTCATCGTG
26629578 T
1 T
26629579 GCATCCCCCT
Statistics
Matches: 143, Mismatches: 17, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
53 1 0.01
54 79 0.55
55 7 0.05
56 55 0.38
57 1 0.01
ACGTcount: A:0.24, C:0.41, G:0.13, T:0.22
Consensus pattern (56 bp):
TCTCACCCAACTCATGTGCATCCCCCCACATCGTGCACATAACCGGAGTCATCGTG
Found at i:26632104 original size:13 final size:13
Alignment explanation
Indices: 26632083--26632116 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
26632073 GACAGAAAGC
*
26632083 ACTTAGTTGACTA
1 ACTTGGTTGACTA
26632096 ACTTGGTTGACTA
1 ACTTGGTTGACTA
*
26632109 AATTGGTT
1 ACTTGGTT
26632117 ATATTTCTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.26, C:0.12, G:0.21, T:0.41
Consensus pattern (13 bp):
ACTTGGTTGACTA
Found at i:26641869 original size:14 final size:15
Alignment explanation
Indices: 26641850--26641879 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
26641840 TTTACGTAGC
26641850 GTTTTAT-AAAAATT
1 GTTTTATGAAAAATT
26641864 GTTTTATGAAAAATT
1 GTTTTATGAAAAATT
26641879 G
1 G
26641880 GAATATTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.40, C:0.00, G:0.13, T:0.47
Consensus pattern (15 bp):
GTTTTATGAAAAATT
Found at i:26669026 original size:35 final size:35
Alignment explanation
Indices: 26668987--26669096 Score: 109
Period size: 35 Copynumber: 3.2 Consensus size: 35
26668977 TGATCTCGGT
*
26668987 AAAAACCATTGTTATAGGTTGTGGTTGAGCCTTTG
1 AAAAACCATTGTTATAGGTTATGGTTGAGCCTTTG
* * * **
26669022 AAAAACCA--CTT-TGGGTTTTGGTTGAGCCCGTG
1 AAAAACCATTGTTATAGGTTATGGTTGAGCCTTTG
* * * *
26669054 AAAAACCATTGTGAAAGGCTATGGTTGAGGCTTTG
1 AAAAACCATTGTTATAGGTTATGGTTGAGCCTTTG
26669089 AAAAACCA
1 AAAAACCA
26669097 CTTTGGATTT
Statistics
Matches: 58, Mismatches: 14, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
32 25 0.43
33 2 0.03
34 1 0.02
35 30 0.52
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (35 bp):
AAAAACCATTGTTATAGGTTATGGTTGAGCCTTTG
Done.