Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41236440
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2030548 characters in sequence are not A, C, G, or T
File 72 of 106
Found at i:27579252 original size:43 final size:43
Alignment explanation
Indices: 27579087--27579239 Score: 200
Period size: 43 Copynumber: 3.6 Consensus size: 43
27579077 TTGACTCGGC
27579087 TATGTGCGAGTAGGGAGTGCGCATAAGTCGAGGATGACCCAGT
1 TATGTGCGAGTAGGGAGTGCGCATAAGTCGAGGATGACCCAGT
* * * * *
27579130 TATGTGGGAGTAAGGAGTGTGCATAAGTCGAGGATGCCCCGGT
1 TATGTGCGAGTAGGGAGTGCGCATAAGTCGAGGATGACCCAGT
* ** *
27579173 TATGTGCGAGTAGGGAGTGTGCATAACCCG-GTGATGACCCAGC
1 TATGTGCGAGTAGGGAGTGCGCATAAGTCGAG-GATGACCCAGT
*
27579216 CATGTGCGAGTAGGGAGTGCGCAT
1 TATGTGCGAGTAGGGAGTGCGCAT
27579240 GAGCTGGTGA
Statistics
Matches: 95, Mismatches: 14, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
42 1 0.01
43 94 0.99
ACGTcount: A:0.24, C:0.17, G:0.38, T:0.22
Consensus pattern (43 bp):
TATGTGCGAGTAGGGAGTGCGCATAAGTCGAGGATGACCCAGT
Found at i:27588167 original size:74 final size:73
Alignment explanation
Indices: 27588027--27588179 Score: 184
Period size: 74 Copynumber: 2.1 Consensus size: 73
27588017 ACCATTTTAG
* * * *
27588027 GATCAAGCATAACCTTACAAGCCATTGTCTTTCAAGCATCAAGCACAACCTTTATAAGCTATTGC
1 GATCAAGCACAACCTTACAAGCCATTGCCTTTCAAGCATCAAGCACAACCTTTACAAGCTAATGC
*
27588092 CTTTCGAA
66 CTTTCAAA
* * *
27588100 GATCAAGGACAACCTTTATAAGCTATTGCCTTTCGAAG-ATCAAGCACAACCTTTACAA-CTAAA
1 GATCAAGCACAACC-TTACAAGCCATTGCCTTTC-AAGCATCAAGCACAACCTTTACAAGCT-AA
*
27588163 TGCCTTTTAAA
63 TGCCTTTCAAA
27588174 GATCAA
1 GATCAA
27588180 ACATAAACTC
Statistics
Matches: 68, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
73 14 0.21
74 51 0.75
75 3 0.04
ACGTcount: A:0.35, C:0.24, G:0.12, T:0.28
Consensus pattern (73 bp):
GATCAAGCACAACCTTACAAGCCATTGCCTTTCAAGCATCAAGCACAACCTTTACAAGCTAATGC
CTTTCAAA
Found at i:27588179 original size:37 final size:37
Alignment explanation
Indices: 27588027--27588154 Score: 188
Period size: 37 Copynumber: 3.5 Consensus size: 37
27588017 ACCATTTTAG
* * * *
27588027 GATCAAGCATAACC-TTACAAGCCATTGTCTTTC-AA
1 GATCAAGCACAACCTTTATAAGCTATTGCCTTTCGAA
27588062 GCATCAAGCACAACCTTTATAAGCTATTGCCTTTCGAA
1 G-ATCAAGCACAACCTTTATAAGCTATTGCCTTTCGAA
*
27588100 GATCAAGGACAACCTTTATAAGCTATTGCCTTTCGAA
1 GATCAAGCACAACCTTTATAAGCTATTGCCTTTCGAA
27588137 GATCAAGCACAACCTTTA
1 GATCAAGCACAACCTTTA
27588155 CAACTAAATG
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
35 1 0.01
36 12 0.14
37 68 0.81
38 3 0.04
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.28
Consensus pattern (37 bp):
GATCAAGCACAACCTTTATAAGCTATTGCCTTTCGAA
Found at i:27590512 original size:35 final size:35
Alignment explanation
Indices: 27590379--27590512 Score: 144
Period size: 35 Copynumber: 3.8 Consensus size: 35
27590369 AGGAAAAAGC
* * *
27590379 TGAGTTGCTACAGGATTAAGGAGGATAAAGGGG-T
1 TGAGTTGCTACCGGTTTAAGGAGGAAAAAGGGGAT
** * * *
27590413 CTGAGTTGCTGTCGGTTTAAAGAGGAAAGAGGGGAC
1 -TGAGTTGCTACCGGTTTAAGGAGGAAAAAGGGGAT
* * **
27590449 TGATTTGCTGCCTATTTAAGGAGGAAAAAGGGGAT
1 TGAGTTGCTACCGGTTTAAGGAGGAAAAAGGGGAT
27590484 TGAGTTGCTACCGGTTTAAGGAGGAAAAA
1 TGAGTTGCTACCGGTTTAAGGAGGAAAAA
27590513 TAAGGCTTAG
Statistics
Matches: 79, Mismatches: 19, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
35 79 1.00
ACGTcount: A:0.31, C:0.09, G:0.35, T:0.25
Consensus pattern (35 bp):
TGAGTTGCTACCGGTTTAAGGAGGAAAAAGGGGAT
Found at i:27595045 original size:15 final size:15
Alignment explanation
Indices: 27595014--27595070 Score: 69
Period size: 15 Copynumber: 3.8 Consensus size: 15
27595004 TTTACAATGC
* *
27595014 AATGTGATTACAGGT
1 AATGTGATTGCAAGT
*
27595029 AATATGATTGCAAGT
1 AATGTGATTGCAAGT
**
27595044 AATGTGATTGCAAAC
1 AATGTGATTGCAAGT
27595059 AATGTGATTGCA
1 AATGTGATTGCA
27595071 GGGAAAATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 36 1.00
ACGTcount: A:0.37, C:0.09, G:0.23, T:0.32
Consensus pattern (15 bp):
AATGTGATTGCAAGT
Found at i:27595327 original size:15 final size:16
Alignment explanation
Indices: 27595303--27595342 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
27595293 TTATTTTCAT
27595303 TATATATTTTTT-TAA
1 TATATATTTTTTATAA
*
27595318 TATA-ATTTTTTATAT
1 TATATATTTTTTATAA
27595333 TATATATTTT
1 TATATATTTT
27595343 AATTTAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 7 0.32
15 10 0.45
16 5 0.23
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TATATATTTTTTATAA
Found at i:27595430 original size:33 final size:30
Alignment explanation
Indices: 27595337--27595437 Score: 89
Period size: 30 Copynumber: 3.3 Consensus size: 30
27595327 TTATATTATA
* ** * *
27595337 TATTTTAA-TTTAATTTCTTTTACCTATAT
1 TATTTTAATTTTAATTTCTTATATTTTTTT
* *
27595366 TATATAAATTTTAATTTCTTATATTTTTTT
1 TATTTTAATTTTAATTTCTTATATTTTTTT
27595396 TATTTTAATTTGTAA-TTCTTATATTATTTATTT
1 TATTTTAATTT-TAATTTCTTATA-T-TTT-TTT
27595429 TATTTTAAT
1 TATTTTAAT
27595438 GTTTTTTATT
Statistics
Matches: 58, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
29 6 0.10
30 33 0.57
31 4 0.07
32 3 0.05
33 12 0.21
ACGTcount: A:0.29, C:0.05, G:0.01, T:0.65
Consensus pattern (30 bp):
TATTTTAATTTTAATTTCTTATATTTTTTT
Found at i:27595455 original size:33 final size:33
Alignment explanation
Indices: 27595372--27595437 Score: 95
Period size: 30 Copynumber: 2.1 Consensus size: 33
27595362 ATATTATATA
27595372 AATTT-TAATTTCTTATA-T-TTT-TTTTATTTT
1 AATTTGTAA-TTCTTATATTATTTATTTTATTTT
27595402 AATTTGTAATTCTTATATTATTTATTTTATTTT
1 AATTTGTAATTCTTATATTATTTATTTTATTTT
27595435 AAT
1 AAT
27595438 GTTTTTTATT
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
30 13 0.41
31 4 0.12
32 3 0.09
33 12 0.38
ACGTcount: A:0.27, C:0.03, G:0.02, T:0.68
Consensus pattern (33 bp):
AATTTGTAATTCTTATATTATTTATTTTATTTT
Found at i:27596771 original size:18 final size:19
Alignment explanation
Indices: 27596745--27596798 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 19
27596735 TATTAGTTTA
27596745 GTTTCATTTATGTTTA-AAT
1 GTTT-ATTTATGTTTATAAT
* *
27596764 GTTTATTTCAAGTTAATAAT
1 GTTTATTT-ATGTTTATAAT
27596784 G-TTATTTATGTTTAT
1 GTTTATTTATGTTTAT
27596799 TTTTATGTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
18 10 0.34
19 15 0.52
20 4 0.14
ACGTcount: A:0.28, C:0.04, G:0.11, T:0.57
Consensus pattern (19 bp):
GTTTATTTATGTTTATAAT
Found at i:27598040 original size:16 final size:15
Alignment explanation
Indices: 27598019--27598059 Score: 55
Period size: 17 Copynumber: 2.6 Consensus size: 15
27598009 TTAGTTTCTA
27598019 TTGATTAATTTAGTGT
1 TTGATTAATTTAGT-T
27598035 TTGATTTAATTTAGTT
1 TTGA-TTAATTTAGTT
*
27598051 TTAATTAAT
1 TTGATTAAT
27598060 GTTTTACATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 5 0.22
16 8 0.35
17 10 0.43
ACGTcount: A:0.29, C:0.00, G:0.12, T:0.59
Consensus pattern (15 bp):
TTGATTAATTTAGTT
Found at i:27628527 original size:43 final size:42
Alignment explanation
Indices: 27628447--27628537 Score: 101
Period size: 43 Copynumber: 2.1 Consensus size: 42
27628437 GCACATGGCT
* * * * *
27628447 GGGTCATCATCGGGTTATTGCATTCCTTACTCGCACATAACC
1 GGGTCATCATCGGCTTATCGCACTCCCTACTCACACATAACC
* *
27628489 GGGTCATCCTCGGCTTATGCGCACTCCCTACTCACACATAGCC
1 GGGTCATCATCGGCTTAT-CGCACTCCCTACTCACACATAACC
*
27628532 GAGTCA
1 GGGTCA
27628538 ATATAATTAC
Statistics
Matches: 40, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
42 16 0.40
43 24 0.60
ACGTcount: A:0.21, C:0.33, G:0.20, T:0.26
Consensus pattern (42 bp):
GGGTCATCATCGGCTTATCGCACTCCCTACTCACACATAACC
Found at i:27632087 original size:43 final size:43
Alignment explanation
Indices: 27632017--27632221 Score: 216
Period size: 43 Copynumber: 4.8 Consensus size: 43
27632007 GTAATTATGT
* * * * *
27632017 TGACTCGGCTATGTTCGAGTAAGGAGTGCGCATAAGCCAAG-GA
1 TGACCCGGTTATGTGCGAGTAGGGAGTGCGCATAA-CCCAGTGA
* *
27632060 TGACCTGGTTATGTGCGAGTAGGGAGTGCGTATAACCC-GATGA
1 TGACCCGGTTATGTGCGAGTAGGGAGTGCGCATAACCCAG-TGA
* * *
27632103 TGACCCGGTTATGTGGGAGTATGGAGTGCGCATAACCCGGTGA
1 TGACCCGGTTATGTGCGAGTAGGGAGTGCGCATAACCCAGTGA
** * *
27632146 TGAATCGATTATGTGCGAGTAGGGAGTGCGCATAACCCGGTGA
1 TGACCCGGTTATGTGCGAGTAGGGAGTGCGCATAACCCAGTGA
* * **
27632189 AGACCCAGCCATGTGCGAGTAGGGAGTGCGCAT
1 TGACCCGGTTATGTGCGAGTAGGGAGTGCGCAT
27632222 GAGCTGGTGA
Statistics
Matches: 136, Mismatches: 23, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
41 1 0.01
42 2 0.01
43 132 0.97
44 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.35, T:0.22
Consensus pattern (43 bp):
TGACCCGGTTATGTGCGAGTAGGGAGTGCGCATAACCCAGTGA
Found at i:27634399 original size:2 final size:2
Alignment explanation
Indices: 27634392--27634422 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
27634382 TTAGGCAATC
*
27634392 AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
27634423 CATACACACA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:27634423 original size:8 final size:8
Alignment explanation
Indices: 27634391--27634426 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
27634381 TTTAGGCAAT
27634391 CATATATA
1 CATATATA
*
27634399 TATATATA
1 CATATATA
*
27634407 TATATATA
1 CATATATA
27634415 CATATATA
1 CATATATA
27634423 CATA
1 CATA
27634427 CACACACACA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (8 bp):
CATATATA
Found at i:27639517 original size:43 final size:43
Alignment explanation
Indices: 27639419--27639517 Score: 108
Period size: 43 Copynumber: 2.3 Consensus size: 43
27639409 TCATTCATCG
* * *
27639419 TCATATGCACTCCTTACTCACACATAGCCAATTCATCATCAGC
1 TCATGTGCACTCCTTACTCACACATAGCCAAGTCATCACCAGC
* *** * * *
27639462 TTATGCAAACTCCTTACTCGCAGATAGCCAGGTCATCACCAGC
1 TCATGTGCACTCCTTACTCACACATAGCCAAGTCATCACCAGC
27639505 TCATGTGCACTCC
1 TCATGTGCACTCC
27639518 CGCATCGCAC
Statistics
Matches: 42, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.27, C:0.34, G:0.12, T:0.26
Consensus pattern (43 bp):
TCATGTGCACTCCTTACTCACACATAGCCAAGTCATCACCAGC
Found at i:27640135 original size:20 final size:20
Alignment explanation
Indices: 27640110--27640149 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
27640100 AGAAGAACAA
*
27640110 GAAGCTATTGGAAAAATGAG
1 GAAGCTACTGGAAAAATGAG
*
27640130 GAAGCTACTGGAGAAATGAG
1 GAAGCTACTGGAAAAATGAG
27640150 ATATTTATAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.42, C:0.07, G:0.33, T:0.17
Consensus pattern (20 bp):
GAAGCTACTGGAAAAATGAG
Found at i:27644866 original size:75 final size:73
Alignment explanation
Indices: 27644713--27644873 Score: 200
Period size: 75 Copynumber: 2.2 Consensus size: 73
27644703 ACACAAGTTA
* *
27644713 AAGCACAACCTTTACAAGTAATTGCCTTTCAAGGCTCAAGCACAACCTCTAGACAAGTCACTACT
1 AAGCACAA-CTTTACAAGAAATTGCCTTTCAAGGATCAAGCACAACCTCTA-ACAAGTCACTACT
*
27644778 TTTTATGACC
64 TTTTAGGACC
* *
27644788 AAGCACAACTTTGCAAGAAATTGCCTTTTCAAGGATCAAGCACAACCTCT-ACAAG-CAACTAAT
1 AAGCACAACTTTACAAGAAATTGCC-TTTCAAGGATCAAGCACAACCTCTAACAAGTC-ACT-AC
*
27644851 TTTTTAAGGATC
63 TTTTT-AGGACC
27644863 AAGCACAACTT
1 AAGCACAACTT
27644874 CTCTACCTTT
Statistics
Matches: 76, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
72 1 0.01
73 8 0.11
74 21 0.28
75 46 0.61
ACGTcount: A:0.36, C:0.25, G:0.12, T:0.26
Consensus pattern (73 bp):
AAGCACAACTTTACAAGAAATTGCCTTTCAAGGATCAAGCACAACCTCTAACAAGTCACTACTTT
TTAGGACC
Found at i:27650773 original size:23 final size:25
Alignment explanation
Indices: 27650729--27650776 Score: 73
Period size: 23 Copynumber: 2.0 Consensus size: 25
27650719 AATCAGGCCT
*
27650729 AAGACATAAATGAATGATGAAAATA
1 AAGACATAAATGAATGAAGAAAATA
27650754 AAGACA-AAATG-ATGAAGAAAATA
1 AAGACATAAATGAATGAAGAAAATA
27650777 GAAATATCGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 11 0.50
24 5 0.23
25 6 0.27
ACGTcount: A:0.62, C:0.04, G:0.17, T:0.17
Consensus pattern (25 bp):
AAGACATAAATGAATGAAGAAAATA
Found at i:27651663 original size:2 final size:2
Alignment explanation
Indices: 27651656--27651690 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
27651646 TATAATGTTG
27651656 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
27651691 CTATNNNNNN
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:27654088 original size:19 final size:20
Alignment explanation
Indices: 27654054--27654091 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
27654044 GAAGAAGACT
27654054 AGCTGCTAGAAAATTCAAGA
1 AGCTGCTAGAAAATTCAAGA
*
27654074 AGCTGCT-GGAAATTCAAG
1 AGCTGCTAGAAAATTCAAG
27654092 GTATTTATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.39, C:0.16, G:0.24, T:0.21
Consensus pattern (20 bp):
AGCTGCTAGAAAATTCAAGA
Found at i:27655691 original size:23 final size:21
Alignment explanation
Indices: 27655640--27655692 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 21
27655630 TGGGGCATGA
27655640 CCACTAGGTTTGCTAGCAATG
1 CCACTAGGTTTGCTAGCAATG
27655661 CCATACTAGGTTTGCTAGCAATGGG
1 CC--ACTAGGTTTGCTAGCAAT--G
27655686 CCACTAG
1 CCACTAG
27655693 TAGTAGCTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
21 2 0.07
23 23 0.82
25 3 0.11
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (21 bp):
CCACTAGGTTTGCTAGCAATG
Found at i:27661800 original size:19 final size:17
Alignment explanation
Indices: 27661747--27661822 Score: 107
Period size: 17 Copynumber: 4.2 Consensus size: 17
27661737 AAATGAAGAT
27661747 TTTAAGGTGAAATTTAAAA
1 TTTAAGGTG--ATTTAAAA
27661766 TTTTAAGGTGATTTAAAA
1 -TTTAAGGTGATTTAAAA
27661784 TTTAAGGTGAAATTTAAAA
1 TTTAAGGTG--ATTTAAAA
27661803 TTTAAGGTGATTTAAAA
1 TTTAAGGTGATTTAAAA
27661820 TTT
1 TTT
27661823 GAACTAACTA
Statistics
Matches: 54, Mismatches: 0, Indels: 7
0.89 0.00 0.11
Matches are distributed among these distances:
17 20 0.37
18 8 0.15
19 17 0.31
20 9 0.17
ACGTcount: A:0.42, C:0.00, G:0.16, T:0.42
Consensus pattern (17 bp):
TTTAAGGTGATTTAAAA
Found at i:27661814 original size:36 final size:37
Alignment explanation
Indices: 27661747--27661822 Score: 145
Period size: 36 Copynumber: 2.1 Consensus size: 37
27661737 AAATGAAGAT
27661747 TTTAAGGTGAAATTTAAAATTTTAAGGTGATTTAAAA
1 TTTAAGGTGAAATTTAAAATTTTAAGGTGATTTAAAA
27661784 TTTAAGGTGAAATTTAAAA-TTTAAGGTGATTTAAAA
1 TTTAAGGTGAAATTTAAAATTTTAAGGTGATTTAAAA
27661820 TTT
1 TTT
27661823 GAACTAACTA
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
36 20 0.51
37 19 0.49
ACGTcount: A:0.42, C:0.00, G:0.16, T:0.42
Consensus pattern (37 bp):
TTTAAGGTGAAATTTAAAATTTTAAGGTGATTTAAAA
Found at i:27681765 original size:38 final size:39
Alignment explanation
Indices: 27681709--27681810 Score: 127
Period size: 38 Copynumber: 2.6 Consensus size: 39
27681699 AAAATGCTCG
* * *
27681709 TGTGCACAATGTGGGGGGATGCACACGATGGC-ACTAAT-
1 TGTGCACGATGT-GGGGGATGCACACGATGACTACGAATA
* *
27681747 TGTGCACGATGTGCGGGGATGCACACGATGACTCCGACTA
1 TGTGCACGATGTG-GGGGATGCACACGATGACTACGAATA
27681787 TGTGCACGATGTGGGGGATGCACA
1 TGTGCACGATGTGGGGGATGCACA
27681811 TGAGCTGGAC
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
37 1 0.02
38 28 0.50
39 14 0.25
40 13 0.23
ACGTcount: A:0.24, C:0.21, G:0.35, T:0.21
Consensus pattern (39 bp):
TGTGCACGATGTGGGGGATGCACACGATGACTACGAATA
Found at i:27682419 original size:18 final size:18
Alignment explanation
Indices: 27682396--27682437 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
27682386 ATCCTAACTT
27682396 CGCTGTAGTGAAAATTCA
1 CGCTGTAGTGAAAATTCA
27682414 CGCTGTAGTGAAAATTCA
1 CGCTGTAGTGAAAATTCA
27682432 CGCTGT
1 CGCTGT
27682438 TTTTTTGACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (18 bp):
CGCTGTAGTGAAAATTCA
Found at i:27683169 original size:20 final size:19
Alignment explanation
Indices: 27683144--27683183 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
27683134 TTTAAAGAAC
27683144 ATTTATCGATAAATGAGCCA
1 ATTTATCGATAAATG-GCCA
*
27683164 ATTTATTGATAAATGGCCA
1 ATTTATCGATAAATGGCCA
27683183 A
1 A
27683184 ATCTATCGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.40, C:0.12, G:0.15, T:0.33
Consensus pattern (19 bp):
ATTTATCGATAAATGGCCA
Found at i:27687530 original size:32 final size:32
Alignment explanation
Indices: 27687489--27687559 Score: 115
Period size: 32 Copynumber: 2.2 Consensus size: 32
27687479 TTATAGGTTG
*
27687489 TGGTTGAGCCTTTGAAAAACCACTTTGGATTT
1 TGGTTGAGCCTTTGAAAAACAACTTTGGATTT
* *
27687521 TGGTTGAGCCTTTGAAAATCAACTTTGGGTTT
1 TGGTTGAGCCTTTGAAAAACAACTTTGGATTT
27687553 TGGTTGA
1 TGGTTGA
27687560 TCCCGGTAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.23, C:0.13, G:0.25, T:0.39
Consensus pattern (32 bp):
TGGTTGAGCCTTTGAAAAACAACTTTGGATTT
Found at i:27696284 original size:73 final size:72
Alignment explanation
Indices: 27696092--27696277 Score: 212
Period size: 72 Copynumber: 2.6 Consensus size: 72
27696082 ATTGAGAAAT
* * * * **
27696092 AGAACCGACTTAGTCGACCAAGATGTGAGTTAATCGACTAAATGCTCTTTGCCAAAATCTAGATT
1 AGAACCAACTTAGTCGACCAAGAAGAGAGTTAGTCGACTAAATGCTCTTTGCCAAAATCTAGACC
**
27696157 TCAAGAC
66 AAAAGAC
* * * *
27696164 AGAACCAACTTAGTCAACTAAGAA-ATGGGTTAGTCGACTAAATGCTCTTTGCCAAAATCTTCGA
1 AGAACCAACTTAGTCGACCAAGAAGA-GAGTTAGTCGACTAAATGCTCTTTGCCAAAATC-TAGA
27696228 CCAAAAGAC
64 CCAAAAGAC
* * *
27696237 ATAACCAACTTAGTTGACCAAGAAGAAAGTTAGTCGACTAA
1 AGAACCAACTTAGTCGACCAAGAAGAGAGTTAGTCGACTAA
27696278 GAGCTCTCTA
Statistics
Matches: 93, Mismatches: 18, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
72 51 0.55
73 41 0.44
74 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.24
Consensus pattern (72 bp):
AGAACCAACTTAGTCGACCAAGAAGAGAGTTAGTCGACTAAATGCTCTTTGCCAAAATCTAGACC
AAAAGAC
Found at i:27696747 original size:35 final size:34
Alignment explanation
Indices: 27696702--27696797 Score: 99
Period size: 35 Copynumber: 2.9 Consensus size: 34
27696692 TTAGTTGTTG
*
27696702 GGTTTTGGTTGATCCTGTGAAAAACCATTGTTGTA
1 GGTTTTGGTTGATCCTGTGAAAAACCATTCTT-TA
* * * *
27696737 GGTTGTGGTTGAGCCTTTGAAAAATCA--CTTTA
1 GGTTTTGGTTGATCCTGTGAAAAACCATTCTTTA
*
27696769 GGTTTTGGTTGATCCGGAT-AAAAACCATT
1 GGTTTTGGTTGATCCTG-TGAAAAACCATT
27696798 ATGAAAGGTT
Statistics
Matches: 48, Mismatches: 10, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
32 22 0.46
33 3 0.06
35 23 0.48
ACGTcount: A:0.25, C:0.12, G:0.25, T:0.38
Consensus pattern (34 bp):
GGTTTTGGTTGATCCTGTGAAAAACCATTCTTTA
Found at i:27708416 original size:36 final size:37
Alignment explanation
Indices: 27708355--27708440 Score: 102
Period size: 36 Copynumber: 2.4 Consensus size: 37
27708345 AATTCACTAT
* * * *
27708355 CAACTTGCCTTTTCAACCAGATTAGGCATAACCTTTA
1 CAACATGCCTTTTCAACAAGATTAGGCATAACATTCA
* * *
27708392 TAGCATGCCTTTT-AACAAGATTAGGCGTAACATTCA
1 CAACATGCCTTTTCAACAAGATTAGGCATAACATTCA
27708428 CAACATGCCTTTT
1 CAACATGCCTTTT
27708441 GCAAGATCAG
Statistics
Matches: 40, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
36 30 0.75
37 10 0.25
ACGTcount: A:0.30, C:0.24, G:0.13, T:0.33
Consensus pattern (37 bp):
CAACATGCCTTTTCAACAAGATTAGGCATAACATTCA
Found at i:27709191 original size:54 final size:54
Alignment explanation
Indices: 27709101--27709260 Score: 239
Period size: 54 Copynumber: 3.0 Consensus size: 54
27709091 AGCAATGATT
* * * *
27709101 CCATCTCACCTAGCTCATATGCATCCCACCAAATTGTGCACATAGTAGGACATC
1 CCATCTCACCCAACTCATGTGCATCCCACCACATTGTGCACATAGTAGGACATC
* **
27709155 CCGTCTCACCCAACTCATGTGCATCCCACCACATTGTGCACATAGCCGGACATC
1 CCATCTCACCCAACTCATGTGCATCCCACCACATTGTGCACATAGTAGGACATC
* *
27709209 CCATCTCACCCAACTCATGTGCATCCCACCACATCGTGCACATAGTTGGACA
1 CCATCTCACCCAACTCATGTGCATCCCACCACATTGTGCACATAGTAGGACA
27709261 ATATCACCAT
Statistics
Matches: 95, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 95 1.00
ACGTcount: A:0.27, C:0.38, G:0.14, T:0.22
Consensus pattern (54 bp):
CCATCTCACCCAACTCATGTGCATCCCACCACATTGTGCACATAGTAGGACATC
Found at i:27710192 original size:23 final size:23
Alignment explanation
Indices: 27710166--27710216 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
27710156 TATTCTTCTT
27710166 TTTCTTCCCTTTTCCATTT-TTTC
1 TTTCTT-CCTTTTCCATTTCTTTC
* * *
27710189 TTTCTTTCTTTTTCGTTTCTTTC
1 TTTCTTCCTTTTCCATTTCTTTC
27710212 TTTCT
1 TTTCT
27710217 CTCTCTCTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 9 0.38
23 15 0.62
ACGTcount: A:0.02, C:0.25, G:0.02, T:0.71
Consensus pattern (23 bp):
TTTCTTCCTTTTCCATTTCTTTC
Found at i:27710207 original size:15 final size:14
Alignment explanation
Indices: 27710183--27710214 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
27710173 CCTTTTCCAT
27710183 TTTTTCTTTCTTTC
1 TTTTTCTTTCTTTC
27710197 TTTTTCGTTTCTTTC
1 TTTTTC-TTTCTTTC
27710212 TTT
1 TTT
27710215 CTCTCTCTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.00, C:0.19, G:0.03, T:0.78
Consensus pattern (14 bp):
TTTTTCTTTCTTTC
Found at i:27710481 original size:35 final size:35
Alignment explanation
Indices: 27710373--27710483 Score: 136
Period size: 35 Copynumber: 3.2 Consensus size: 35
27710363 TTTCTCTCTC
27710373 AAATTTG-TAGCAAAACTCTTTCTTTTT-CCTCTCAA
1 AAATTTGCT-GCAAAACTCTTTCTTTTTCCCTCT-AA
* ** * * *
27710408 AATTTTGCAACAAAACTCTTTTTTTTTCCCTTTCA
1 AAATTTGCTGCAAAACTCTTTCTTTTTCCCTCTAA
27710443 AAATTTGCTGCAAAACTCTTTCTTTTTCCCTCTAA
1 AAATTTGCTGCAAAACTCTTTCTTTTTCCCTCTAA
27710478 AAATTT
1 AAATTT
27710484 ACAGCACAAG
Statistics
Matches: 62, Mismatches: 12, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
35 58 0.94
36 4 0.06
ACGTcount: A:0.28, C:0.23, G:0.05, T:0.45
Consensus pattern (35 bp):
AAATTTGCTGCAAAACTCTTTCTTTTTCCCTCTAA
Found at i:27710635 original size:49 final size:46
Alignment explanation
Indices: 27710576--27710670 Score: 147
Period size: 45 Copynumber: 2.0 Consensus size: 46
27710566 TTGGCTGGTG
27710576 GTTTTCCCCTTTGCTCTCTCTCTCACACCGACTTCTCTCTTTCTTCTTCA
1 GTTTTCCCCTTTG--CTCTCT-T-ACACCGACTTCTCTCTTTCTTCTTCA
27710626 GTTTT-CCCTTTGCTCTCTTACACCGACTTCTCTCTTTCTTCTTCA
1 GTTTTCCCCTTTGCTCTCTTACACCGACTTCTCTCTTTCTTCTTCA
27710671 AATAGTCAGC
Statistics
Matches: 45, Mismatches: 0, Indels: 5
0.90 0.00 0.10
Matches are distributed among these distances:
45 26 0.58
46 1 0.02
47 6 0.13
49 7 0.16
50 5 0.11
ACGTcount: A:0.08, C:0.38, G:0.06, T:0.47
Consensus pattern (46 bp):
GTTTTCCCCTTTGCTCTCTTACACCGACTTCTCTCTTTCTTCTTCA
Found at i:27712567 original size:36 final size:36
Alignment explanation
Indices: 27712527--27712621 Score: 131
Period size: 36 Copynumber: 2.6 Consensus size: 36
27712517 TAGCTAGAAT
* *
27712527 CATCGTGTG-TACCCCCACATTGCGTAC-AGCTAATGC
1 CATCGTGTGCT-CCCCCACATCGCGCACGA-CTAATGC
27712563 CATCGTGTGCTCCCCCACATCGCGCACGACTAATGC
1 CATCGTGTGCTCCCCCACATCGCGCACGACTAATGC
*
27712599 CATTGTGTGCTCCCCCACATCGC
1 CATCGTGTGCTCCCCCACATCGC
27712622 ACAAAGGCAA
Statistics
Matches: 54, Mismatches: 3, Indels: 4
0.89 0.05 0.07
Matches are distributed among these distances:
36 52 0.96
37 2 0.04
ACGTcount: A:0.19, C:0.39, G:0.19, T:0.23
Consensus pattern (36 bp):
CATCGTGTGCTCCCCCACATCGCGCACGACTAATGC
Found at i:27714362 original size:21 final size:22
Alignment explanation
Indices: 27714338--27714378 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
27714328 TTTCTGTCTC
27714338 TTGAGAT-TCAAG-TCTTTTATT
1 TTGAGATGTC-AGTTCTTTTATT
27714359 TTGAGATGTCAGTTCTTTTA
1 TTGAGATGTCAGTTCTTTTA
27714379 CCATTAAGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.22, C:0.10, G:0.17, T:0.51
Consensus pattern (22 bp):
TTGAGATGTCAGTTCTTTTATT
Found at i:27716236 original size:20 final size:21
Alignment explanation
Indices: 27716200--27716238 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
27716190 TTGATCTTAA
*
27716200 CTTAAGAATTGACTTCTTCTT
1 CTTAAAAATTGACTTCTTCTT
27716221 CTTAAAAATTGA-TTCTTC
1 CTTAAAAATTGACTTCTTC
27716239 CTATGATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.28, C:0.18, G:0.08, T:0.46
Consensus pattern (21 bp):
CTTAAAAATTGACTTCTTCTT
Found at i:27719237 original size:17 final size:19
Alignment explanation
Indices: 27719196--27719237 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
27719186 ATATATATAT
27719196 ATGAATATATGTTGTGCATTG
1 ATGAATATATGTTGTG-A-TG
27719217 ATGAATA-ATGTTGTG-TG
1 ATGAATATATGTTGTGATG
27719234 ATGA
1 ATGA
27719238 TGTTGAAGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
17 6 0.29
20 8 0.38
21 7 0.33
ACGTcount: A:0.31, C:0.02, G:0.26, T:0.40
Consensus pattern (19 bp):
ATGAATATATGTTGTGATG
Found at i:27719274 original size:37 final size:37
Alignment explanation
Indices: 27719232--27719350 Score: 168
Period size: 37 Copynumber: 3.2 Consensus size: 37
27719222 TAATGTTGTG
27719232 TGATGATGTTGAAGTGTGCGAGTAGGGAGTGCACACA
1 TGATGATGTTGAAGTGTGCGAGTAGGGAGTGCACACA
* * * *
27719269 TGATGATGTTGAAGTGCGTGAGTAGGAAGTGCACTCA
1 TGATGATGTTGAAGTGTGCGAGTAGGGAGTGCACACA
* *
27719306 TGATGATGTT-AGACTGTGCGAGTAGGGAGTGAACACA
1 TGATGATGTTGA-AGTGTGCGAGTAGGGAGTGCACACA
27719343 TGATGATG
1 TGATGATG
27719351 ATATTGCATT
Statistics
Matches: 71, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
36 1 0.01
37 70 0.99
ACGTcount: A:0.28, C:0.10, G:0.36, T:0.26
Consensus pattern (37 bp):
TGATGATGTTGAAGTGTGCGAGTAGGGAGTGCACACA
Found at i:27719650 original size:22 final size:22
Alignment explanation
Indices: 27719625--27719667 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
27719615 CACGATAGCC
*
27719625 AAAAAGAATTCTTGTTGCAGTG
1 AAAAAGAATTCTCGTTGCAGTG
* *
27719647 AAAATGGATTCTCGTTGCAGT
1 AAAAAGAATTCTCGTTGCAGT
27719668 AAGAAATTCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.12, G:0.23, T:0.33
Consensus pattern (22 bp):
AAAAAGAATTCTCGTTGCAGTG
Found at i:27727522 original size:15 final size:15
Alignment explanation
Indices: 27727502--27727550 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
27727492 AAAGGAAAAA
27727502 AAGAAAGAGAGAGAG
1 AAGAAAGAGAGAGAG
* *
27727517 AAGAAAAAGAGTTGA-
1 AAGAAAGAGAG-AGAG
27727532 AAGAAAGAGA-A-AG
1 AAGAAAGAGAGAGAG
27727545 AAGAAA
1 AAGAAA
27727551 AAACTGGTAC
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
12 1 0.04
13 6 0.21
15 19 0.68
16 2 0.07
ACGTcount: A:0.65, C:0.00, G:0.31, T:0.04
Consensus pattern (15 bp):
AAGAAAGAGAGAGAG
Found at i:27727634 original size:24 final size:24
Alignment explanation
Indices: 27727607--27727723 Score: 66
Period size: 24 Copynumber: 4.8 Consensus size: 24
27727597 CTGAGGAGAA
27727607 AGAAAGGAAAAGAAAGAAGAAAG-G
1 AGAAAGGAAAAGAAA-AAGAAAGAG
* * *
27727631 AGAAAGGAGAGGAAAAAGAATGAG
1 AGAAAGGAAAAGAAAAAGAAAGAG
* *
27727655 AGAAAGAATAAAGGAGAAAGGAAA-AG
1 AGAAAGGA-AAA-GA-AAAAGAAAGAG
*
27727681 AAGGAGAAGG-AAAGAAGGAA-AAAGA-
1 -A-GA-AAGGAAAAGAA-AAAGAAAGAG
27727706 AGAAAGG-AAAGAAAAAGA
1 AGAAAGGAAAAGAAAAAGA
27727724 GAGAAAGAGG
Statistics
Matches: 71, Mismatches: 12, Indels: 22
0.68 0.11 0.21
Matches are distributed among these distances:
21 2 0.03
22 11 0.15
23 8 0.11
24 22 0.31
25 5 0.07
26 8 0.11
27 10 0.14
28 2 0.03
29 3 0.04
ACGTcount: A:0.65, C:0.00, G:0.33, T:0.02
Consensus pattern (24 bp):
AGAAAGGAAAAGAAAAAGAAAGAG
Found at i:27727668 original size:31 final size:30
Alignment explanation
Indices: 27727614--27727730 Score: 80
Period size: 32 Copynumber: 3.8 Consensus size: 30
27727604 GAAAGAAAGG
*
27727614 AAAAGAAAGAAGAAAGGAGAAAGGAGAGGA
1 AAAAGAAAGAAGAAAGAAGAAAGGAGAGGA
* *
27727644 AAAAGAATGAGAGAAAGAATAAAGGAGAAAGG-
1 AAAAGAAAGA-AGAAAGAAGAAAGGAG--AGGA
* *
27727676 AAAAGAAGGAGAAGGAAAGAAGGAAA-AAGAAG-
1 AAAAGAA--AGAA-GAAAGAA-GAAAGGAGAGGA
*
27727708 AAAGGAAAGAA-AAAGAGAGAAAG
1 AAAAGAAAGAAGAAAGA-AGAAAG
27727731 AGGGTCGGTT
Statistics
Matches: 70, Mismatches: 8, Indels: 19
0.72 0.08 0.20
Matches are distributed among these distances:
28 9 0.13
29 1 0.01
30 13 0.19
31 14 0.20
32 15 0.21
33 4 0.06
34 11 0.16
35 3 0.04
ACGTcount: A:0.65, C:0.00, G:0.33, T:0.02
Consensus pattern (30 bp):
AAAAGAAAGAAGAAAGAAGAAAGGAGAGGA
Found at i:27727692 original size:15 final size:15
Alignment explanation
Indices: 27727634--27727699 Score: 57
Period size: 15 Copynumber: 4.3 Consensus size: 15
27727624 AGAAAGGAGA
27727634 AAGGAG-AGGAAAAAG
1 AAGGAGAAGG-AAAAG
* *
27727649 AATGAGAGAAAGAATA-
1 AA-G-GAGAAGGAAAAG
27727665 AAGGAGAAAGGAAAAG
1 AAGGAG-AAGGAAAAG
27727681 AAGGAGAAGG-AAAG
1 AAGGAGAAGGAAAAG
27727695 AAGGA
1 AAGGA
27727700 AAAAGAAGAA
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
14 12 0.29
15 13 0.31
16 9 0.21
17 6 0.14
18 2 0.05
ACGTcount: A:0.61, C:0.00, G:0.36, T:0.03
Consensus pattern (15 bp):
AAGGAGAAGGAAAAG
Found at i:27727729 original size:14 final size:14
Alignment explanation
Indices: 27727652--27727731 Score: 60
Period size: 14 Copynumber: 5.7 Consensus size: 14
27727642 GAAAAAGAAT
27727652 GAGAGAAAGAATAAA
1 GAGAGAAAGAA-AAA
*
27727667 G-GAGAAAGGAAAA
1 GAGAGAAAGAAAAA
*
27727680 GAAGGAGAAGGAAAGAA
1 G-A-GAGAAAGAAA-AA
* *
27727697 G-GAAAAAGAAGAA
1 GAGAGAAAGAAAAA
27727710 -AG-GAAAGAAAAA
1 GAGAGAAAGAAAAA
27727722 GAGAGAAAGA
1 GAGAGAAAGA
27727732 GGGTCGGTTG
Statistics
Matches: 50, Mismatches: 8, Indels: 15
0.68 0.11 0.21
Matches are distributed among these distances:
12 8 0.16
13 9 0.18
14 21 0.42
15 1 0.02
16 8 0.16
17 3 0.06
ACGTcount: A:0.65, C:0.00, G:0.34, T:0.01
Consensus pattern (14 bp):
GAGAGAAAGAAAAA
Found at i:27727815 original size:184 final size:183
Alignment explanation
Indices: 27727615--27727984 Score: 713
Period size: 184 Copynumber: 2.0 Consensus size: 183
27727605 AAAGAAAGGA
27727615 AAAGAAAGAAGAAAGGAGAAAGGAGAGGAAAAAGAATGAGAGAAAGAATAAAGGAGAAAGGAAAA
1 AAAGAAAGAAGAAAGGAGAAAGGAGAGGAAAAAGAATGAGAGAAAGAATAAAGGAGAAAGGAAAA
27727680 GAAGGAGAAGGAAAGAAGGAAAAAGAAGAAAGGAAAGAAAAAGAGAGAAAGAGGGTCGGTTGGAA
66 GAAGGAGAAGGAAAGAAGGAAAAAGAAGAAAGGAAAGAAAAAGAGAGAAAGAGGGTCGGTTGGAA
27727745 GAGAAGAAAGAGGACAAAAGAAGGCCAACTAGAGGAGAAAAAAAAAANAAGAGG
131 GAGAAGAAAGAGGACAAAAGAAGGCCAACTAGAGGAGAAAAAAAAAA-AAGAGG
27727799 AAAGAAAGAAGAAAGGAGAAAGGAGAGGAAAAAGAATGAGAGAAAGAATAAAGGAGAAAGGAAAA
1 AAAGAAAGAAGAAAGGAGAAAGGAGAGGAAAAAGAATGAGAGAAAGAATAAAGGAGAAAGGAAAA
27727864 GAAGGAGAAGGAAAGAAGGAAAAAGAAGAAAGGAAAGAAAAAGAGAGAAAGAGGGTCGGTTGGAA
66 GAAGGAGAAGGAAAGAAGGAAAAAGAAGAAAGGAAAGAAAAAGAGAGAAAGAGGGTCGGTTGGAA
* *
27727929 GAGAAGAAAGAGGACAAAAGAAGGCCAACTAGAGGAGAAAAAAAAAAGAGAAG
131 GAGAAGAAAGAGGACAAAAGAAGGCCAACTAGAGGAGAAAAAAAAAAAAGAGG
27727982 AAA
1 AAA
27727985 ACGAAATGAA
Statistics
Matches: 184, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
183 7 0.04
184 177 0.96
ACGTcount: A:0.60, C:0.03, G:0.34, T:0.03
Consensus pattern (183 bp):
AAAGAAAGAAGAAAGGAGAAAGGAGAGGAAAAAGAATGAGAGAAAGAATAAAGGAGAAAGGAAAA
GAAGGAGAAGGAAAGAAGGAAAAAGAAGAAAGGAAAGAAAAAGAGAGAAAGAGGGTCGGTTGGAA
GAGAAGAAAGAGGACAAAAGAAGGCCAACTAGAGGAGAAAAAAAAAAAAGAGG
Found at i:27727818 original size:14 final size:14
Alignment explanation
Indices: 27727800--27727915 Score: 69
Period size: 14 Copynumber: 8.1 Consensus size: 14
27727790 AANAAGAGGA
*
27727800 AAGAAAGAAGAAAG
1 AAGAAAGGAGAAAG
* *
27727814 GAGAAAGGAGAGGAAA
1 AAGAAAGGAGA--AAG
*
27727830 AAGAATGAGAGAAAG
1 AAGAAAG-GAGAAAG
*
27727845 AATAAAGGAGAAAGG
1 AAGAAAGGAGAAA-G
* *
27727860 AAAAGAAGGAGAAGG
1 AAGA-AAGGAGAAAG
*
27727875 AA-AGAAGGAAAAAG
1 AAGA-AAGGAGAAAG
27727889 AAGAAA-G-GAAAG
1 AAGAAAGGAGAAAG
27727901 AA-AAAGAGAGAAAG
1 AAGAAAG-GAGAAAG
27727915 A
1 A
27727916 GGGTCGGTTG
Statistics
Matches: 80, Mismatches: 13, Indels: 18
0.72 0.12 0.16
Matches are distributed among these distances:
11 3 0.04
12 6 0.08
13 2 0.03
14 35 0.44
15 15 0.19
16 15 0.19
17 4 0.05
ACGTcount: A:0.65, C:0.00, G:0.34, T:0.02
Consensus pattern (14 bp):
AAGAAAGGAGAAAG
Found at i:27727876 original size:15 final size:15
Alignment explanation
Indices: 27727818--27727883 Score: 57
Period size: 15 Copynumber: 4.3 Consensus size: 15
27727808 AGAAAGGAGA
27727818 AAGGAG-AGGAAAAAG
1 AAGGAGAAGG-AAAAG
* *
27727833 AATGAGAGAAAGAATA-
1 AA-G-GAGAAGGAAAAG
27727849 AAGGAGAAAGGAAAAG
1 AAGGAG-AAGGAAAAG
27727865 AAGGAGAAGG-AAAG
1 AAGGAGAAGGAAAAG
27727879 AAGGA
1 AAGGA
27727884 AAAAGAAGAA
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
14 12 0.29
15 13 0.31
16 9 0.21
17 6 0.14
18 2 0.05
ACGTcount: A:0.61, C:0.00, G:0.36, T:0.03
Consensus pattern (15 bp):
AAGGAGAAGGAAAAG
Found at i:27729886 original size:30 final size:30
Alignment explanation
Indices: 27729850--27729909 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
27729840 CTCCCCACTA
27729850 GCACATGGCTGGTTCATCATCGGCTTATGC
1 GCACATGGCTGGTTCATCATCGGCTTATGC
*
27729880 GCACATGGCTGGTTCATCATTGGCTTATGC
1 GCACATGGCTGGTTCATCATCGGCTTATGC
27729910 ACACTCTTAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.17, C:0.25, G:0.27, T:0.32
Consensus pattern (30 bp):
GCACATGGCTGGTTCATCATCGGCTTATGC
Found at i:27733401 original size:42 final size:43
Alignment explanation
Indices: 27733340--27733475 Score: 170
Period size: 43 Copynumber: 3.2 Consensus size: 43
27733330 TTTTGTGTGA
*
27733340 TGATGATGACCTAGCTATGTGC-GTGGAGGAGTGCACATGAGC
1 TGATGATGACCCAGCTATGTGCGGTGGAGGAGTGCACATGAGC
* * *
27733382 TAATGATGACCCAACTATGTGCGGTGTG-GGAGTGCACATGAAC
1 TGATGATGACCCAGCTATGTGCGGTG-GAGGAGTGCACATGAGC
* * *
27733425 TGATAATGACTCAGCTATGTGCGAGTGGA-AAGTGCACATGAGC
1 TGATGATGACCCAGCTATGTGCG-GTGGAGGAGTGCACATGAGC
27733468 TGATGATG
1 TGATGATG
27733476 GTGAGATGGT
Statistics
Matches: 79, Mismatches: 11, Indels: 7
0.81 0.11 0.07
Matches are distributed among these distances:
42 19 0.24
43 56 0.71
44 4 0.05
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.24
Consensus pattern (43 bp):
TGATGATGACCCAGCTATGTGCGGTGGAGGAGTGCACATGAGC
Found at i:27734835 original size:20 final size:21
Alignment explanation
Indices: 27734810--27734866 Score: 80
Period size: 20 Copynumber: 2.7 Consensus size: 21
27734800 TAGATCAGTT
*
27734810 GAAAGAAAGGAGAAAG-GAAA
1 GAAAGAAAGGAGAAAGAAAAA
27734830 GAAAGAAAGGAGAAAGAAAAA
1 GAAAGAAAGGAGAAAGAAAAA
*
27734851 GAGAGAAAGGAAGAAA
1 GAAAGAAAGG-AGAAA
27734867 AATCTTGGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
20 16 0.48
21 12 0.36
22 5 0.15
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (21 bp):
GAAAGAAAGGAGAAAGAAAAA
Found at i:27735836 original size:72 final size:72
Alignment explanation
Indices: 27735756--27735919 Score: 274
Period size: 72 Copynumber: 2.3 Consensus size: 72
27735746 ATTAAATGCA
* *
27735756 ATTGTGGAAAGCATGAGCTGATAGCCTCAATAGGCGATTTCTAAATGGATTCATAATGATTTATA
1 ATTGTGGAAAGCATGAGCTGATAGCCTCAATAGGCGATTTCTAAAGGGATTCATAATGACTTATA
*
27735821 CACTGTT
66 CACTATT
* *
27735828 ATTGTGGAAAACATGAGCTGATAGCCTCAATAGGTGATTTCTAAAGGGATTCATAATGACTTATA
1 ATTGTGGAAAGCATGAGCTGATAGCCTCAATAGGCGATTTCTAAAGGGATTCATAATGACTTATA
27735893 CACTATT
66 CACTATT
*
27735900 ATTATGGAAAGCATGAGCTG
1 ATTGTGGAAAGCATGAGCTG
27735920 GTAGAAATCA
Statistics
Matches: 85, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
72 85 1.00
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.32
Consensus pattern (72 bp):
ATTGTGGAAAGCATGAGCTGATAGCCTCAATAGGCGATTTCTAAAGGGATTCATAATGACTTATA
CACTATT
Found at i:27745374 original size:43 final size:43
Alignment explanation
Indices: 27745318--27745436 Score: 159
Period size: 43 Copynumber: 2.8 Consensus size: 43
27745308 GTAATTATAT
* *
27745318 TGACTCGGCTATGTGTGAGTAGGGAGTGCGCATAAGCCGAG-GA
1 TGACTCGGCTATGTGCGAGTAGGGAGTGCGCATAACCCG-GTGA
* *
27745361 TGACTTGGTTATGTGCGAGTAGGGAGTGCGCATAACCCGGTGA
1 TGACTCGGCTATGTGCGAGTAGGGAGTGCGCATAACCCGGTGA
* * *
27745404 TGACCCAGCCATGTGCGAGTAGGGAGTGCGCAT
1 TGACTCGGCTATGTGCGAGTAGGGAGTGCGCAT
27745437 GAGCTGGTGA
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
42 1 0.02
43 65 0.98
ACGTcount: A:0.22, C:0.18, G:0.38, T:0.22
Consensus pattern (43 bp):
TGACTCGGCTATGTGCGAGTAGGGAGTGCGCATAACCCGGTGA
Found at i:27746986 original size:22 final size:22
Alignment explanation
Indices: 27746958--27747000 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
27746948 AAGTTGAAGA
*
27746958 ATTCTTGTTACAAGGAAAATCC
1 ATTCTTGCTACAAGGAAAATCC
* *
27746980 ATTCTTGCTGCAATGAAAATC
1 ATTCTTGCTACAAGGAAAATC
27747001 AATTTGGAAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.33
Consensus pattern (22 bp):
ATTCTTGCTACAAGGAAAATCC
Found at i:27747193 original size:36 final size:36
Alignment explanation
Indices: 27747114--27747240 Score: 125
Period size: 36 Copynumber: 3.5 Consensus size: 36
27747104 GCTTGCCAGC
** * *
27747114 TCATGTGCACTCCCACACCATACATAGCTGAA-ATCA
1 TCATGTGCACTCCCACACCGCACATAAC-AAATATCA
* * *
27747150 TCCTGTGCACTCCCACATCC-CACATAACTAATA-CTG
1 TCATGTGCACTCCCACA-CCGCACATAACAAATATC-A
*
27747186 TCATGTGCACTCCCACACCGCACATGACAAATATCA
1 TCATGTGCACTCCCACACCGCACATAACAAATATCA
*
27747222 TCATGTACACTCCCACACC
1 TCATGTGCACTCCCACACC
27747241 ACATCCTCAC
Statistics
Matches: 76, Mismatches: 10, Indels: 10
0.79 0.10 0.10
Matches are distributed among these distances:
35 5 0.07
36 68 0.89
37 3 0.04
ACGTcount: A:0.31, C:0.38, G:0.09, T:0.22
Consensus pattern (36 bp):
TCATGTGCACTCCCACACCGCACATAACAAATATCA
Found at i:27747233 original size:72 final size:67
Alignment explanation
Indices: 27747114--27747276 Score: 168
Period size: 72 Copynumber: 2.4 Consensus size: 67
27747104 GCTTGCCAGC
** * * *
27747114 TCATGTGCACTCCCACACCATACATAGCTGAAATCATCCTGTGCACTCCCACATCCCACATAACT
1 TCATGTGCACTCCCACACCGCACATAGCTAAAATCATCATGTACACTCCCACA--CCACAT-ACT
* *
27747179 AATACTG
63 --CACCG
*
27747186 TCATGTGCACTCCCACACCGCACAT-GAC-AAATATCATCATGTACACTCCCACACCACATCCTC
1 TCATGTGCACTCCCACACCGCACATAG-CTAAA-ATCATCATGTACACTCCCACACCACATACTC
27747249 ACCG
64 ACCG
*
27747253 GCATGTGCACTCCCACACCGCACA
1 TCATGTGCACTCCCACACCGCACA
27747277 CCCACGGTTA
Statistics
Matches: 80, Mismatches: 9, Indels: 9
0.82 0.09 0.09
Matches are distributed among these distances:
67 26 0.32
69 2 0.03
70 6 0.08
71 3 0.04
72 43 0.54
ACGTcount: A:0.29, C:0.40, G:0.10, T:0.20
Consensus pattern (67 bp):
TCATGTGCACTCCCACACCGCACATAGCTAAAATCATCATGTACACTCCCACACCACATACTCAC
CG
Found at i:27752985 original size:9 final size:9
Alignment explanation
Indices: 27752973--27752997 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
27752963 GCTAAAGATG
27752973 ATAAAGACA
1 ATAAAGACA
27752982 ATAAAGACA
1 ATAAAGACA
27752991 ATAAAGA
1 ATAAAGA
27752998 AAGTGCTGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.68, C:0.08, G:0.12, T:0.12
Consensus pattern (9 bp):
ATAAAGACA
Found at i:27754528 original size:2 final size:2
Alignment explanation
Indices: 27754521--27754553 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
27754511 TATAATATTG
27754521 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
27754554 CTATGTCATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:27754710 original size:54 final size:54
Alignment explanation
Indices: 27754648--27754759 Score: 197
Period size: 54 Copynumber: 2.1 Consensus size: 54
27754638 GGGGGATATG
*
27754648 GATGGGATGTCCGGCTATGTGCACAATGTGGTGGGATGCACATGAGATGGGTGA
1 GATGGGATGTCCGGCTATGTGCACAATGTGGTGGGATGCACATGAGATAGGTGA
* *
27754702 GATGGGATGTCCGGCTATGTGCACGATGTGGTGGGATGCACATGAGCTAGGTGA
1 GATGGGATGTCCGGCTATGTGCACAATGTGGTGGGATGCACATGAGATAGGTGA
27754756 GATG
1 GATG
27754760 CACATAATGA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.21, C:0.13, G:0.41, T:0.24
Consensus pattern (54 bp):
GATGGGATGTCCGGCTATGTGCACAATGTGGTGGGATGCACATGAGATAGGTGA
Found at i:27758336 original size:68 final size:67
Alignment explanation
Indices: 27758227--27758554 Score: 345
Period size: 68 Copynumber: 4.8 Consensus size: 67
27758217 AAGCTTACTT
* * * * *
27758227 ATCTCATAAGGTATATGGAAAATACATCATATACATAATCTCATAGCATTCATCATGCTTTCTCA
1 ATCTCAT-GGGTATATGGAATATACATCATATACATAATCTCATGGCATTCATCATGCATACTCA
27758292 ATC
65 ATC
* * * *
27758295 ATCTCATGGAGTAAATGGAATATACATCATATACCTAATCTCATGGCATTCATCATGCTTTCTCA
1 ATCTCATGG-GTATATGGAATATACATCATATACATAATCTCATGGCATTCATCATGCATACTCA
27758360 ATC
65 ATC
* * * **
27758363 ATCTCATGTAGTGTATGGAATATACATCATATACATAATTTCATGGCATTTGTCATGCATACAT-
1 ATCTCATG-GGTATATGGAATATACATCATATACATAATCTCATGGCATTCATCATGCATAC-TC
27758427 AATC
64 AATC
* * * * * * * * *
27758431 ACCTCATATGGTATATGGAATTTACATCATATACACAATCTTATAGTATACATCATGCATACTTA
1 ATCTCAT-GGGTATATGGAATATACATCATATACATAATCTCATGGCATTCATCATGCATACTCA
27758496 ATC
65 ATC
* * *
27758499 ATCTCACAT-GGTATATGGAATTTACATCATATACATAATCTTATGGCATTCGTCAT
1 ATCT--CATGGGTATATGGAATATACATCATATACATAATCTCATGGCATTCATCAT
27758555 ACCAAACATG
Statistics
Matches: 220, Mismatches: 33, Indels: 14
0.82 0.12 0.05
Matches are distributed among these distances:
67 2 0.01
68 214 0.97
69 1 0.00
70 3 0.01
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.35
Consensus pattern (67 bp):
ATCTCATGGGTATATGGAATATACATCATATACATAATCTCATGGCATTCATCATGCATACTCAA
TC
Found at i:27762975 original size:40 final size:38
Alignment explanation
Indices: 27762920--27763022 Score: 134
Period size: 38 Copynumber: 2.7 Consensus size: 38
27762910 ATCCAGCTCA
* *
27762920 TGTGCATCCCCCCACATCGTGCACATAGTCGGAGTCATCG
1 TGTGCATCCCCCCACATCGTGCACA-A-TCAGAGCCATCG
*
27762960 TGTGCATCCCCCCACATCGTGCACAATCAGTGCCATCG
1 TGTGCATCCCCCCACATCGTGCACAATCAGAGCCATCG
* * *
27762998 TGTACATTCCCCCACATCATGCACA
1 TGTGCATCCCCCCACATCGTGCACA
27763023 CGGGCACTAT
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
38 31 0.54
39 1 0.02
40 25 0.44
ACGTcount: A:0.22, C:0.38, G:0.17, T:0.22
Consensus pattern (38 bp):
TGTGCATCCCCCCACATCGTGCACAATCAGAGCCATCG
Found at i:27764523 original size:68 final size:68
Alignment explanation
Indices: 27764329--27764524 Score: 232
Period size: 68 Copynumber: 2.9 Consensus size: 68
27764319 ATGCTTGCTC
* * * * * *
27764329 AATCATCTCATGT-AGTATATGGAATATACATCATATACATATTCTCATGGCATTAATCATGCAT
1 AATCATCTCATATGA-TATATGGAATTTACATCATATACATAATCTTATGGCATTCATCATCCAT
27764393 ACTT
65 ACTT
* * ** * * * *
27764397 AATCACCTCATATGGTATATGGAATTTACATCATATACACCATCCTATAGTATGCATCATCCATA
1 AATCATCTCATATGATATATGGAATTTACATCATATACATAATCTTATGGCATTCATCATCCATA
27764462 CTT
66 CTT
* *
27764465 GATCATCTCATATGATATATGGAATTTACATCATATACATAATATTATGGCATTCATCAT
1 AATCATCTCATATGATATATGGAATTTACATCATATACATAATCTTATGGCATTCATCAT
27764525 ACCAACATGC
Statistics
Matches: 103, Mismatches: 24, Indels: 2
0.80 0.19 0.02
Matches are distributed among these distances:
68 103 1.00
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.36
Consensus pattern (68 bp):
AATCATCTCATATGATATATGGAATTTACATCATATACATAATCTTATGGCATTCATCATCCATA
CTT
Found at i:27765761 original size:16 final size:16
Alignment explanation
Indices: 27765742--27765772 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
27765732 TAAAAAAATA
27765742 AAAAAAATCAAAATCC
1 AAAAAAATCAAAATCC
*
27765758 AAAAGAATCAAAATC
1 AAAAAAATCAAAATC
27765773 TAAATTTTGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.68, C:0.16, G:0.03, T:0.13
Consensus pattern (16 bp):
AAAAAAATCAAAATCC
Found at i:27768028 original size:19 final size:19
Alignment explanation
Indices: 27768004--27768056 Score: 88
Period size: 19 Copynumber: 2.8 Consensus size: 19
27767994 AACCAAGGAG
27768004 ATAAGATAAAATTTTTAGA
1 ATAAGATAAAATTTTTAGA
27768023 ATAAGATAAAATTTTTAGA
1 ATAAGATAAAATTTTTAGA
* *
27768042 ATAAAATAATATTTT
1 ATAAGATAAAATTTT
27768057 ATTAATAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.40
Consensus pattern (19 bp):
ATAAGATAAAATTTTTAGA
Found at i:27768685 original size:2 final size:2
Alignment explanation
Indices: 27768678--27768706 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
27768668 NNNNNNNNNN
27768678 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
27768707 ATTGAATGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:27768798 original size:17 final size:18
Alignment explanation
Indices: 27768767--27768800 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
27768757 GAGGGAGAGT
27768767 CAAAGAGAAACAAAGAAA
1 CAAAGAGAAACAAAGAAA
*
27768785 CAAAG-GAAAGAAAGAA
1 CAAAGAGAAACAAAGAA
27768801 GAAAGAAGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.71, C:0.09, G:0.21, T:0.00
Consensus pattern (18 bp):
CAAAGAGAAACAAAGAAA
Found at i:27769337 original size:15 final size:13
Alignment explanation
Indices: 27769299--27769338 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 13
27769289 ACAGTGGAAG
27769299 AAAGAAAGAAATA
1 AAAGAAAGAAATA
27769312 AAAGAAAAGAAAGTA
1 AAAG-AAAGAAA-TA
27769327 ACAAGAAAGAAA
1 A-AAGAAAGAAA
27769339 AAATGGGCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 4 0.17
14 7 0.29
15 10 0.42
16 3 0.12
ACGTcount: A:0.75, C:0.03, G:0.17, T:0.05
Consensus pattern (13 bp):
AAAGAAAGAAATA
Found at i:27769403 original size:26 final size:27
Alignment explanation
Indices: 27769326--27769408 Score: 123
Period size: 27 Copynumber: 3.1 Consensus size: 27
27769316 AAAAGAAAGT
*
27769326 AACAAGAAAGAAAAAATGGGCATGACCC
1 AACAAGAAAG-AAAAATGGGCATGGCCC
*
27769354 AACAAGAAAGAAAAATGGGTATGGCCC
1 AACAAGAAAGAAAAATGGGCATGGCCC
*
27769381 AACAAGAAAG-AAAACGGGCATGGCCC
1 AACAAGAAAGAAAAATGGGCATGGCCC
27769407 AA
1 AA
27769409 TTCGAAAGAG
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 16 0.31
27 25 0.49
28 10 0.20
ACGTcount: A:0.51, C:0.18, G:0.24, T:0.07
Consensus pattern (27 bp):
AACAAGAAAGAAAAATGGGCATGGCCC
Found at i:27787079 original size:21 final size:21
Alignment explanation
Indices: 27787055--27787094 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
27787045 TCATGCAATT
*
27787055 CATGACAAAGATTGATGCCTA
1 CATGACAAAGAATGATGCCTA
27787076 CATGACAAAGAATGATGCC
1 CATGACAAAGAATGATGCC
27787095 ATCATTCAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (21 bp):
CATGACAAAGAATGATGCCTA
Found at i:27790160 original size:9 final size:9
Alignment explanation
Indices: 27790148--27790185 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
27790138 GTTTTCTATT
27790148 TTTTTTTTC
1 TTTTTTTTC
27790157 TTTTTTTTC
1 TTTTTTTTC
* *
27790166 TTTTTGTTG
1 TTTTTTTTC
27790175 TTTTTTTTC
1 TTTTTTTTC
27790184 TT
1 TT
27790186 CAAACATTGG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.00, C:0.08, G:0.05, T:0.87
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:27793726 original size:21 final size:21
Alignment explanation
Indices: 27793702--27793769 Score: 102
Period size: 21 Copynumber: 3.2 Consensus size: 21
27793692 GTTCATGCAA
27793702 TTCATGACAAAGACTA-ATGCC
1 TTCATGACAAAGA-TAGATGCC
27793723 TTCATGACAAAGATAGATGCC
1 TTCATGACAAAGATAGATGCC
*
27793744 TTCATGACAAAGATTGATGCC
1 TTCATGACAAAGATAGATGCC
*
27793765 ATCAT
1 TTCAT
27793770 TCAAAGTCAA
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
20 2 0.05
21 42 0.95
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.26
Consensus pattern (21 bp):
TTCATGACAAAGATAGATGCC
Found at i:27794286 original size:23 final size:22
Alignment explanation
Indices: 27794249--27794293 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 22
27794239 TTCGAAACTC
27794249 TTATTTTTTAATTATTTTTATT
1 TTATTTTTTAATTATTTTTATT
*
27794271 TTATTTATTTATTTATTTTTATT
1 TTATTT-TTTAATTATTTTTATT
27794294 AATCTCTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 6 0.29
23 15 0.71
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (22 bp):
TTATTTTTTAATTATTTTTATT
Found at i:27795722 original size:3 final size:3
Alignment explanation
Indices: 27795716--27795746 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
27795706 TAATAACAGA
*
27795716 AGT AGT AGT AGT AGT AGT AGT AGG AGT AGT A
1 AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT A
27795747 ACTATATTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.35, C:0.00, G:0.35, T:0.29
Consensus pattern (3 bp):
AGT
Found at i:27801658 original size:2 final size:2
Alignment explanation
Indices: 27801651--27801676 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
27801641 CATACATATT
27801651 CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA
27801677 TATATACATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:27803909 original size:39 final size:38
Alignment explanation
Indices: 27803855--27803954 Score: 112
Period size: 37 Copynumber: 2.6 Consensus size: 38
27803845 ACCCAGCTCA
* * ** *
27803855 TGTGCAACCCCCACATCGTGCACATAGCTAGGGTCATCG
1 TGTGCATCCCCCACATCGTGCACA-AGCTAAGACCACCG
* *
27803894 TGTGCATCCCCCACATCATGCAC-AGCTAATACCACCG
1 TGTGCATCCCCCACATCGTGCACAAGCTAAGACCACCG
*
27803931 TGTGCATCCCCCACATCGCGCACA
1 TGTGCATCCCCCACATCGTGCACA
27803955 CGTAATATCA
Statistics
Matches: 51, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
37 30 0.59
39 21 0.41
ACGTcount: A:0.24, C:0.39, G:0.18, T:0.19
Consensus pattern (38 bp):
TGTGCATCCCCCACATCGTGCACAAGCTAAGACCACCG
Found at i:27807351 original size:19 final size:19
Alignment explanation
Indices: 27807327--27807363 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
27807317 CCATTTGACT
27807327 TATTGGAGTATGATTTGAG
1 TATTGGAGTATGATTTGAG
27807346 TATTGGAGTATGATTTGA
1 TATTGGAGTATGATTTGA
27807364 AGTTTAGAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.27, C:0.00, G:0.30, T:0.43
Consensus pattern (19 bp):
TATTGGAGTATGATTTGAG
Found at i:27808590 original size:13 final size:13
Alignment explanation
Indices: 27808572--27808596 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27808562 GGAGAAATTG
27808572 TGATTTTATAAAA
1 TGATTTTATAAAA
27808585 TGATTTTATAAA
1 TGATTTTATAAA
27808597 TTTTCTGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:27810187 original size:19 final size:20
Alignment explanation
Indices: 27810150--27810190 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
27810140 ACGATATATC
*
27810150 TTGCATGTTTTATTTGTGTT
1 TTGCATGTTTTAGTTGTGTT
27810170 TTGCATGTTTT-GTTGTGTT
1 TTGCATGTTTTAGTTGTGTT
27810189 TT
1 TT
27810191 CGAAAACAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.07, C:0.05, G:0.22, T:0.66
Consensus pattern (20 bp):
TTGCATGTTTTAGTTGTGTT
Found at i:27811496 original size:20 final size:20
Alignment explanation
Indices: 27811468--27811515 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
27811458 TTATAATTAG
*
27811468 TTTACTTTTAAGTTAGTTAT
1 TTTAATTTTAAGTTAGTTAT
* * *
27811488 TTTAATTTTATGTTATTTCT
1 TTTAATTTTAAGTTAGTTAT
27811508 TTTAATTT
1 TTTAATTT
27811516 GTATATTATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.23, C:0.04, G:0.06, T:0.67
Consensus pattern (20 bp):
TTTAATTTTAAGTTAGTTAT
Found at i:27811526 original size:21 final size:20
Alignment explanation
Indices: 27811487--27811526 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
27811477 AAGTTAGTTA
*
27811487 TTTTAATTTTATGTTATTTC
1 TTTTAATTTTATATTATTTC
27811507 TTTTAATTTGTATATTATTT
1 TTTTAATTT-TATATTATTT
27811527 ATTAGTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.23, C:0.03, G:0.05, T:0.70
Consensus pattern (20 bp):
TTTTAATTTTATATTATTTC
Found at i:27812756 original size:2 final size:2
Alignment explanation
Indices: 27812719--27812748 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
27812709 TTTACATCTG
*
27812719 TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
27812749 CGTATATACC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:27812820 original size:20 final size:20
Alignment explanation
Indices: 27812761--27812823 Score: 83
Period size: 20 Copynumber: 3.2 Consensus size: 20
27812751 TATATACCCA
*
27812761 TCATCATCATC-TCACCAAC
1 TCATCATCATCATCACCAGC
* *
27812780 CCATCATCGTCATCACCAGC
1 TCATCATCATCATCACCAGC
*
27812800 TCATCATCATCATCACTAGC
1 TCATCATCATCATCACCAGC
27812820 TCAT
1 TCAT
27812824 GCGCACTCCC
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
19 9 0.24
20 28 0.76
ACGTcount: A:0.29, C:0.40, G:0.05, T:0.27
Consensus pattern (20 bp):
TCATCATCATCATCACCAGC
Found at i:27812870 original size:43 final size:43
Alignment explanation
Indices: 27812822--27812983 Score: 209
Period size: 43 Copynumber: 3.8 Consensus size: 43
27812812 TCACTAGCTC
** * *
27812822 ATGCGCACTCCCTACTCGCACATGGCTGGGTCATCACCGGGTT
1 ATGCGCACTCCCTACTCGCACATAACCGAGTCATCACCGGGTT
*
27812865 ATGCGCACTCCCTACTCGCACATAACCGAGTCATCACCAGGTT
1 ATGCGCACTCCCTACTCGCACATAACCGAGTCATCACCGGGTT
* * *
27812908 ATGCGCAGTCCCTACTCGCACATAACCAAGTCATC-CTCGGCTT
1 ATGCGCACTCCCTACTCGCACATAACCGAGTCATCAC-CGGGTT
* * *
27812951 ATGCGCACTCCTTACTCGCACATAGCTGAGTCA
1 ATGCGCACTCCCTACTCGCACATAACCGAGTCA
27812984 ACATAATTAC
Statistics
Matches: 104, Mismatches: 14, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
42 1 0.01
43 103 0.99
ACGTcount: A:0.22, C:0.36, G:0.19, T:0.23
Consensus pattern (43 bp):
ATGCGCACTCCCTACTCGCACATAACCGAGTCATCACCGGGTT
Found at i:27815285 original size:20 final size:20
Alignment explanation
Indices: 27815262--27815300 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
27815252 ATTAGTTTTG
* *
27815262 ATTTTTCTTGATTGGTTTAA
1 ATTTTACTTAATTGGTTTAA
*
27815282 ATTTTAGTTAATTGGTTTA
1 ATTTTACTTAATTGGTTTA
27815301 GTTGATCAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.23, C:0.03, G:0.15, T:0.59
Consensus pattern (20 bp):
ATTTTACTTAATTGGTTTAA
Found at i:27817495 original size:20 final size:20
Alignment explanation
Indices: 27817457--27817495 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
27817447 TAATGGCTAA
*
27817457 TAATAGCTAGAAACTGTCTG
1 TAATAGCTAGAAACAGTCTG
* *
27817477 TAATGGCTAGAATCAGTCT
1 TAATAGCTAGAAACAGTCT
27817496 CTCAAGTATC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.31
Consensus pattern (20 bp):
TAATAGCTAGAAACAGTCTG
Found at i:27820871 original size:60 final size:60
Alignment explanation
Indices: 27820752--27820914 Score: 173
Period size: 60 Copynumber: 2.7 Consensus size: 60
27820742 AGACAAAAAT
* * * * ** * * *
27820752 AGAAGGTTTTTCGCTGCAGCGAGATTCAATCTCACTACAGTGAAATTGTGACCCGGAAAC
1 AGAAAGTTTCTCGTTGCAGCGAGATTGAATCTCACTGTAGCGAAATTGTAACCCAGAAAC
* *
27820812 AGAATGTTTCTCGTTGCAACGAGATTGAATCTCACTGTAGCGAAATTGTAACCCAGAAAC
1 AGAAAGTTTCTCGTTGCAGCGAGATTGAATCTCACTGTAGCGAAATTGTAACCCAGAAAC
* * * * * *
27820872 AAAAAGTTGCTCATTGCAGCGAGAATGAATTTCGCTGTAGCGA
1 AGAAAGTTTCTCGTTGCAGCGAGATTGAATCTCACTGTAGCGA
27820915 GAAGCTACTA
Statistics
Matches: 85, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
60 85 1.00
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.26
Consensus pattern (60 bp):
AGAAAGTTTCTCGTTGCAGCGAGATTGAATCTCACTGTAGCGAAATTGTAACCCAGAAAC
Found at i:27821292 original size:43 final size:43
Alignment explanation
Indices: 27821235--27821349 Score: 126
Period size: 42 Copynumber: 2.7 Consensus size: 43
27821225 TCATCATCAC
* ** *
27821235 CAGCTCATGCGCACTCCCTACTCGCACATGGCTAGGTCATCAC-
1 CAGCTTATGCGCACTCCCTACTCGCACATAACCAGGTCATC-CT
* * * * *
27821278 CGGGTTATGTGCACTTCC-ACTCGCACATAACCAGGTTATCCT
1 CAGCTTATGCGCACTCCCTACTCGCACATAACCAGGTCATCCT
27821320 CAGCTTATGCGCACTCCCTACTCGCACATA
1 CAGCTTATGCGCACTCCCTACTCGCACATA
27821350 GCCGAGTCAA
Statistics
Matches: 57, Mismatches: 13, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
41 1 0.02
42 32 0.56
43 24 0.42
ACGTcount: A:0.22, C:0.37, G:0.17, T:0.24
Consensus pattern (43 bp):
CAGCTTATGCGCACTCCCTACTCGCACATAACCAGGTCATCCT
Found at i:27835386 original size:19 final size:19
Alignment explanation
Indices: 27835362--27835399 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
27835352 CCATTTAACT
*
27835362 TATTGGAGTATGATTTGAG
1 TATTGGAGTATAATTTGAG
27835381 TATTGGAGTATAATTTGAG
1 TATTGGAGTATAATTTGAG
27835400 GGTTTGGCAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.42
Consensus pattern (19 bp):
TATTGGAGTATAATTTGAG
Found at i:27838084 original size:28 final size:29
Alignment explanation
Indices: 27838053--27838111 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
27838043 TGACAGCTTT
27838053 AACATGTTT-GTATTAATTTAGACAAGAA
1 AACATGTTTGGTATTAATTTAGACAAGAA
*
27838081 AACATGTTTGGTCTTAATTTAGACAAGAA
1 AACATGTTTGGTATTAATTTAGACAAGAA
27838110 AA
1 AA
27838112 TATTCAATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 9 0.31
29 20 0.69
ACGTcount: A:0.42, C:0.08, G:0.15, T:0.34
Consensus pattern (29 bp):
AACATGTTTGGTATTAATTTAGACAAGAA
Found at i:27838122 original size:21 final size:22
Alignment explanation
Indices: 27838096--27838138 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
27838086 GTTTGGTCTT
27838096 AATTTAGACAAG-AAAATATTC
1 AATTTAGACAAGAAAAATATTC
*
27838117 AATTTAGGCAAGATAAAATATT
1 AATTTAGACAAGA-AAAATATT
27838139 TTTGTCTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 11 0.58
23 8 0.42
ACGTcount: A:0.51, C:0.07, G:0.12, T:0.30
Consensus pattern (22 bp):
AATTTAGACAAGAAAAATATTC
Found at i:27856826 original size:22 final size:21
Alignment explanation
Indices: 27856801--27856845 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
27856791 AATTCACCAC
27856801 ATTGATCCTAAATCACTATA-TA
1 ATTGA-CCTAAATC-CTATACTA
*
27856823 ATTGACTTAAATCCTATACTA
1 ATTGACCTAAATCCTATACTA
27856844 AT
1 AT
27856846 GCATGGTATG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 5 0.24
21 11 0.52
22 5 0.24
ACGTcount: A:0.40, C:0.18, G:0.04, T:0.38
Consensus pattern (21 bp):
ATTGACCTAAATCCTATACTA
Found at i:27861717 original size:23 final size:22
Alignment explanation
Indices: 27861690--27861734 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 22
27861680 TTTTTCTTCT
27861690 AGCAGCTTCTTCTCTCATTTTCC
1 AGCAGCTTCTTCT-TCATTTTCC
*
27861713 AGCAGCTTCTTCTTCTTTTTCC
1 AGCAGCTTCTTCTTCATTTTCC
27861735 TTCTTCTCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.11, C:0.33, G:0.09, T:0.47
Consensus pattern (22 bp):
AGCAGCTTCTTCTTCATTTTCC
Found at i:27862564 original size:38 final size:40
Alignment explanation
Indices: 27862522--27862627 Score: 144
Period size: 38 Copynumber: 2.7 Consensus size: 40
27862512 TAACCGTGTG
* *
27862522 TGTGCACGATGTGGGGGGATGCACATGATGGC-ACTAAT-
1 TGTGCACGATGTGGGGGGATGCACATGATGACTACGAATA
* * **
27862560 TGTGCACGATGTGGGGGGATGCACACGATGACTCCGGCTA
1 TGTGCACGATGTGGGGGGATGCACATGATGACTACGAATA
27862600 TGTGCACGATGTGGGGGGATGCACATGA
1 TGTGCACGATGTGGGGGGATGCACATGA
27862628 GCTGGATGAG
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
38 30 0.51
39 2 0.03
40 27 0.46
ACGTcount: A:0.22, C:0.18, G:0.39, T:0.22
Consensus pattern (40 bp):
TGTGCACGATGTGGGGGGATGCACATGATGACTACGAATA
Found at i:27865031 original size:2 final size:2
Alignment explanation
Indices: 27865026--27865068 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
27865016 ACTTTATATA
27865026 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
27865068 A
1 A
27865069 TATATATATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:27865073 original size:2 final size:2
Alignment explanation
Indices: 27865068--27865100 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
27865058 ACACACACAC
27865068 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
27865101 CATACATCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:27865204 original size:37 final size:37
Alignment explanation
Indices: 27865154--27865231 Score: 138
Period size: 37 Copynumber: 2.1 Consensus size: 37
27865144 CAATATCATT
*
27865154 ATCATGTGTGCACTCCCTACTCGCACACTTCAACGTC
1 ATCATGTGTGCACTCCCTACTCGCACACTTCAACATC
*
27865191 ATCATGTGTGCACTCCTTACTCGCACACTTCAACATC
1 ATCATGTGTGCACTCCCTACTCGCACACTTCAACATC
27865228 ATCA
1 ATCA
27865232 AACAACATTA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.24, C:0.36, G:0.12, T:0.28
Consensus pattern (37 bp):
ATCATGTGTGCACTCCCTACTCGCACACTTCAACATC
Found at i:27865261 original size:2 final size:2
Alignment explanation
Indices: 27865254--27865296 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
27865244 CATCANATAT
27865254 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
27865296 A
1 A
27865297 TATATATATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:27865301 original size:2 final size:2
Alignment explanation
Indices: 27865296--27865328 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
27865286 ACACACACAC
27865296 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
27865329 CATACATCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:27865409 original size:228 final size:228
Alignment explanation
Indices: 27865021--27865478 Score: 900
Period size: 228 Copynumber: 2.0 Consensus size: 228
27865011 TCATGACTTT
27865021 ATATAACACACACACACACACACACACACACACACACACACACACACATATATATATATATATAT
1 ATATAACACACACACACACACACACACACACACACACACACACACACATATATATATATATATAT
27865086 ATATATATATATATACATACATCATCAAGCATACCATCCCACCACACTGAGCTCAATGCAATATC
66 ATATATATATATATACATACATCATCAAGCATACCATCCCACCACACTGAGCTCAATGCAATATC
27865151 ATTATCATGTGTGCACTCCCTACTCGCACACTTCAACGTCATCATGTGTGCACTCCTTACTCGCA
131 ATTATCATGTGTGCACTCCCTACTCGCACACTTCAACGTCATCATGTGTGCACTCCTTACTCGCA
27865216 CACTTCAACATCATCAAACAACATTATTCATCA
196 CACTTCAACATCATCAAACAACATTATTCATCA
27865249 NATAT-ACACACACACACACACACACACACACACACACACACACACACATATATATATATATATA
1 -ATATAACACACACACACACACACACACACACACACACACACACACACATATATATATATATATA
27865313 TATATATATATATATACATACATCATCAAGCATACCATCCCACCACACTGAGCTCAATGCAATAT
65 TATATATATATATATACATACATCATCAAGCATACCATCCCACCACACTGAGCTCAATGCAATAT
27865378 CATTATCATGTGTGCACTCCCTACTCGCACACTTCAACGTCATCATGTGTGCACTCCTTACTCGC
130 CATTATCATGTGTGCACTCCCTACTCGCACACTTCAACGTCATCATGTGTGCACTCCTTACTCGC
27865443 ACACTTCAACATCATCAAACAACATTATTCATCA
195 ACACTTCAACATCATCAAACAACATTATTCATCA
27865477 AT
1 AT
27865479 GCACAACACA
Statistics
Matches: 229, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
227 2 0.01
228 223 0.97
229 4 0.02
ACGTcount: A:0.38, C:0.31, G:0.06, T:0.25
Consensus pattern (228 bp):
ATATAACACACACACACACACACACACACACACACACACACACACACATATATATATATATATAT
ATATATATATATATACATACATCATCAAGCATACCATCCCACCACACTGAGCTCAATGCAATATC
ATTATCATGTGTGCACTCCCTACTCGCACACTTCAACGTCATCATGTGTGCACTCCTTACTCGCA
CACTTCAACATCATCAAACAACATTATTCATCA
Found at i:27865432 original size:37 final size:37
Alignment explanation
Indices: 27865382--27865459 Score: 138
Period size: 37 Copynumber: 2.1 Consensus size: 37
27865372 CAATATCATT
*
27865382 ATCATGTGTGCACTCCCTACTCGCACACTTCAACGTC
1 ATCATGTGTGCACTCCCTACTCGCACACTTCAACATC
*
27865419 ATCATGTGTGCACTCCTTACTCGCACACTTCAACATC
1 ATCATGTGTGCACTCCCTACTCGCACACTTCAACATC
27865456 ATCA
1 ATCA
27865460 AACAACATTA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.24, C:0.36, G:0.12, T:0.28
Consensus pattern (37 bp):
ATCATGTGTGCACTCCCTACTCGCACACTTCAACATC
Found at i:27865486 original size:23 final size:25
Alignment explanation
Indices: 27865460--27865513 Score: 62
Period size: 23 Copynumber: 2.3 Consensus size: 25
27865450 AACATCATCA
27865460 AACAACATTATTCAT-CA-ATGCAC
1 AACAACATTATTCATACATATGCAC
*
27865483 AAC-ACA-TATTCATATATATGCAC
1 AACAACATTATTCATACATATGCAC
*
27865506 ACCAACAT
1 AACAACAT
27865514 AATATATGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
21 7 0.28
22 4 0.16
23 11 0.44
24 3 0.12
ACGTcount: A:0.44, C:0.26, G:0.04, T:0.26
Consensus pattern (25 bp):
AACAACATTATTCATACATATGCAC
Found at i:27865520 original size:23 final size:23
Alignment explanation
Indices: 27865477--27865520 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
27865467 TTATTCATCA
*
27865477 ATGCACAACACATATTCATATAT
1 ATGCACAACACATAATCATATAT
*
27865500 ATGCACACCAACATAAT-ATAT
1 ATGCACAAC-ACATAATCATAT
27865521 GAGCATATGG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 12 0.67
24 6 0.33
ACGTcount: A:0.45, C:0.23, G:0.05, T:0.27
Consensus pattern (23 bp):
ATGCACAACACATAATCATATAT
Found at i:27868270 original size:21 final size:21
Alignment explanation
Indices: 27868214--27868274 Score: 79
Period size: 22 Copynumber: 2.9 Consensus size: 21
27868204 TGCATTTTAT
*
27868214 TTCA-AATGTATCAATACATG
1 TTCATAATGTATCGATACATG
* *
27868234 CTCATGATGTTATCGATACATG
1 TTCATAATG-TATCGATACATG
27868256 TTCATAATGTATCGATACA
1 TTCATAATGTATCGATACA
27868275 GTTTTTCCAA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
20 3 0.09
21 13 0.38
22 18 0.53
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.36
Consensus pattern (21 bp):
TTCATAATGTATCGATACATG
Found at i:27869443 original size:66 final size:66
Alignment explanation
Indices: 27869250--27869513 Score: 250
Period size: 68 Copynumber: 3.9 Consensus size: 66
27869240 CATGTTTGGT
* * * *
27869250 ATGATGAATGCCATAAACTTATGTATATGATATAAATTCCATATAC-CAAATAAGATGATTAAAT
1 ATGATGAATGCCATAGA-TTATGTATATGATGTAAATTCCATATACTC--ATGAGATGATTAAGT
27869314 ATGC
63 ATGC
* * * * *
27869318 ATGATGTATACTATAAGATTTTGTATAT-AGTGTAAATTCCATATAC-CATAGAAGGTGATTAAG
1 ATGATGAATGCCAT-AGATTATGTATATGA-TGTAAATTCCATATACTCAT-G-AGATGATTAAG
27869381 TATGC
62 TATGC
* * * *
27869386 ATGATAAATGCCAT-GATTATGTATATGATGTATATTCCATATACTACATGAGATGATTAAGAAA
1 ATGATGAATGCCATAGATTATGTATATGATGTAAATTCCATATACT-CATGAGATGATTAAGTAT
27869450 GC
65 GC
* * * *
27869452 ATGATGAATGCCATGAGATTATGTATATGATGT-ATTTCAATATACCTTATGAGATGAGTAAG
1 ATGATGAATGCCAT-AGATTATGTATATGATGTAAATTCCATATA-CTCATGAGATGATTAAG
27869514 CTTGTATGTG
Statistics
Matches: 162, Mismatches: 24, Indels: 21
0.78 0.12 0.10
Matches are distributed among these distances:
66 54 0.33
67 24 0.15
68 82 0.51
69 2 0.01
ACGTcount: A:0.39, C:0.10, G:0.17, T:0.34
Consensus pattern (66 bp):
ATGATGAATGCCATAGATTATGTATATGATGTAAATTCCATATACTCATGAGATGATTAAGTATG
C
Found at i:27869978 original size:287 final size:287
Alignment explanation
Indices: 27869452--27870028 Score: 892
Period size: 287 Copynumber: 2.0 Consensus size: 287
27869442 TTAAGAAAGC
* *
27869452 ATGATGAATGCCATGAGATTATGTATATGATGTATTTCAATATACCTTATGAGATGAGTAAGCTT
1 ATGATAAATGCCATGAGATTATGTATATGATGTATTTCAATATACCTTATGAGATAAGTAAGCTT
* *
27869517 GTATGTGAAGGACATTCCACATACCTAATTTTACGAGTATGAGAATTCTATGAGTGTGATTGATT
66 GTATGTGAAGGACATTCCACATACCTAATTTTAAGAGTATGAGAACTCTATGAGTGTGATTGATT
** * * **
27869582 CCACTCTCACGGGGTGCAAGTGACGACTTCACTCCTATGGTGCATGATTAATGCCCAAGGCCAAT
131 CCACTCTCAAAGGGTGCAAGTGACGACTTCACTCCTATGATGCATGATAAACACCCAAGGCCAAT
* **
27869647 AGGGATGTACATTGCCAGCCTGAGGTGATAAGGGATGTACCATTACAAAGTATGAGGTTAATGTT
196 AGGAATGTACATTGCCAGCCCAAGGTGATAAGGGATGTACCATTACAAAGTATGAGGTTAATGTT
27869712 AATGGAATGATCATAATTACTATGTTT
261 AATGGAATGATCATAATTACTATGTTT
*
27869739 ATGATAAATTCCATGAGATT-TGTATATGATGTATTTTCAATATACCTTATGAGATAAGTAAGCT
1 ATGATAAATGCCATGAGATTATGTATATGATGTA-TTTCAATATACCTTATGAGATAAGTAAGCT
*
27869803 TGTATGTGAAGGACATTCCACATACCTGATTTTAAGAGTATGAGAACTCTATGAGTGTGATTGAT
65 TGTATGTGAAGGACATTCCACATACCTAATTTTAAGAGTATGAGAACTCTATGAGTGTGATTGAT
* **
27869868 TCCACTCTCAAAGGGTGCAAGTGACGACTTCACTCTTATGATGCATGATAAACACCCAAGGGTAA
130 TCCACTCTCAAAGGGTGCAAGTGACGACTTCACTCCTATGATGCATGATAAACACCCAAGGCCAA
* * * *
27869933 T-GGCAATGTACGTTGCC-GACCCAAGGTGAT-GGTGGATGTACCATTACAAATTATGAGTTTAA
195 TAGG-AATGTACATTGCCAG-CCCAAGGTGATAAG-GGATGTACCATTACAAAGTATGAGGTTAA
27869995 TGTTAATGGAATGATCATAATTACTATGTTT
257 TGTTAATGGAATGATCATAATTACTATGTTT
27870026 ATG
1 ATG
27870029 GTATGTTGCA
Statistics
Matches: 264, Mismatches: 22, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
286 17 0.06
287 247 0.94
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (287 bp):
ATGATAAATGCCATGAGATTATGTATATGATGTATTTCAATATACCTTATGAGATAAGTAAGCTT
GTATGTGAAGGACATTCCACATACCTAATTTTAAGAGTATGAGAACTCTATGAGTGTGATTGATT
CCACTCTCAAAGGGTGCAAGTGACGACTTCACTCCTATGATGCATGATAAACACCCAAGGCCAAT
AGGAATGTACATTGCCAGCCCAAGGTGATAAGGGATGTACCATTACAAAGTATGAGGTTAATGTT
AATGGAATGATCATAATTACTATGTTT
Found at i:27870922 original size:2 final size:2
Alignment explanation
Indices: 27870915--27870946 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
27870905 GACACTTTTT
*
27870915 CA CA CA CA CA CA CA CA CA CA CA CG CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
27870947 TACCAAGTGC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.50, G:0.03, T:0.00
Consensus pattern (2 bp):
CA
Found at i:27876584 original size:19 final size:19
Alignment explanation
Indices: 27876560--27876597 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
27876550 ACTTATAAAC
27876560 CTCAAATCATACTCCAATA
1 CTCAAATCATACTCCAATA
*
27876579 CTCAAATCATACTTCAATA
1 CTCAAATCATACTCCAATA
27876598 AGTCAAATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.29, G:0.00, T:0.29
Consensus pattern (19 bp):
CTCAAATCATACTCCAATA
Found at i:27880040 original size:28 final size:27
Alignment explanation
Indices: 27879989--27880042 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 27
27879979 ATGTCCTAGT
*
27879989 GGTGGAAAATTACAACTTTGCCCTTAG
1 GGTGGAAAATTACAACTTTACCCTTAG
* *
27880016 GGTGGCAAAATTACCATTTTACCCTTA
1 GGTGG-AAAATTACAACTTTACCCTTA
27880043 TACTCCAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 5 0.22
28 18 0.78
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (27 bp):
GGTGGAAAATTACAACTTTACCCTTAG
Found at i:27880110 original size:19 final size:19
Alignment explanation
Indices: 27880086--27880123 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
27880076 ACTTCTAAAC
27880086 CTCAAATCATACTCCAATA
1 CTCAAATCATACTCCAATA
*
27880105 CTCAAATCATGCTCCAATA
1 CTCAAATCATACTCCAATA
27880124 AGTCAAATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.39, C:0.32, G:0.03, T:0.26
Consensus pattern (19 bp):
CTCAAATCATACTCCAATA
Found at i:27882843 original size:35 final size:35
Alignment explanation
Indices: 27882792--27882885 Score: 111
Period size: 35 Copynumber: 2.7 Consensus size: 35
27882782 CTTTCTTTTT
*
27882792 CCCTCTCAAAATTGGCAGCAAGTTCC-CTCATTTCA
1 CCCTCTCAAAACTGGCAGCAAG-TCCTCTCATTTCA
* *
27882827 CCCTTTCAAAACTGGCAGCAAGTCCTCTCATTTCT
1 CCCTCTCAAAACTGGCAGCAAGTCCTCTCATTTCA
* *
27882862 CTCTCTCAAAA-TCGGTAGCAAGTC
1 CCCTCTCAAAACT-GGCAGCAAGTC
27882886 AACCCTCTTT
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
34 4 0.08
35 47 0.92
ACGTcount: A:0.26, C:0.33, G:0.13, T:0.29
Consensus pattern (35 bp):
CCCTCTCAAAACTGGCAGCAAGTCCTCTCATTTCA
Found at i:27887954 original size:2 final size:2
Alignment explanation
Indices: 27887947--27887972 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
27887937 CTCCACATAC
27887947 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
27887973 TTATTTATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:27892007 original size:19 final size:20
Alignment explanation
Indices: 27891978--27892017 Score: 73
Period size: 19 Copynumber: 2.0 Consensus size: 20
27891968 TCACTTCTAA
27891978 ACTTCAAATCATACTCCAAT
1 ACTTCAAATCATACTCCAAT
27891998 ACTT-AAATCATACTCCAAT
1 ACTTCAAATCATACTCCAAT
27892017 A
1 A
27892018 AGTCAAATGG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.42, C:0.28, G:0.00, T:0.30
Consensus pattern (20 bp):
ACTTCAAATCATACTCCAAT
Found at i:27896538 original size:34 final size:35
Alignment explanation
Indices: 27896494--27896576 Score: 89
Period size: 35 Copynumber: 2.4 Consensus size: 35
27896484 TTCAACAGAA
* * * *
27896494 TTTCCTTCTCAAATC-GGCAACAAGACTCTTTC-TT
1 TTTCCCTCTCAAAACTGGAAACAA-ACTCCTTCATT
*
27896528 TTTCCCTCTCAAAACTGGAAACAAATTCCTTCATT
1 TTTCCCTCTCAAAACTGGAAACAAACTCCTTCATT
*
27896563 TCTCCCTCTCAAAA
1 TTTCCCTCTCAAAA
27896577 TCGATAGCAA
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
34 19 0.46
35 22 0.54
ACGTcount: A:0.28, C:0.31, G:0.06, T:0.35
Consensus pattern (35 bp):
TTTCCCTCTCAAAACTGGAAACAAACTCCTTCATT
Found at i:27896569 original size:35 final size:36
Alignment explanation
Indices: 27896530--27896614 Score: 104
Period size: 35 Copynumber: 2.4 Consensus size: 36
27896520 TCTTTCTTTT
* *
27896530 TCCCTCTCAAAACTGGA-AACAAATTCC-TTCATTTC
1 TCCCTCTCAAAACTGGATAAC-AAGTCCACTCATTTC
* *
27896565 TCCCTCTCAAAA-TCGATAGCAAGTCCACTCATTTC
1 TCCCTCTCAAAACTGGATAACAAGTCCACTCATTTC
27896600 TCCCTCTCAAAACTG
1 TCCCTCTCAAAACTG
27896615 ACAGCAAGTC
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
34 8 0.19
35 33 0.79
36 1 0.02
ACGTcount: A:0.29, C:0.34, G:0.07, T:0.29
Consensus pattern (36 bp):
TCCCTCTCAAAACTGGATAACAAGTCCACTCATTTC
Found at i:27896621 original size:35 final size:35
Alignment explanation
Indices: 27896558--27896624 Score: 109
Period size: 35 Copynumber: 1.9 Consensus size: 35
27896548 ACAAATTCCT
*
27896558 TCATTTCTCCCTCTCAAAATCGATAGCAAGTCCAC
1 TCATTTCTCCCTCTCAAAATCGACAGCAAGTCCAC
27896593 TCATTTCTCCCTCTCAAAA-CTGACAGCAAGTC
1 TCATTTCTCCCTCTCAAAATC-GACAGCAAGTC
27896625 AGCCCCCTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
34 1 0.03
35 29 0.97
ACGTcount: A:0.28, C:0.34, G:0.09, T:0.28
Consensus pattern (35 bp):
TCATTTCTCCCTCTCAAAATCGACAGCAAGTCCAC
Found at i:27899576 original size:14 final size:14
Alignment explanation
Indices: 27899557--27899586 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
27899547 CTTAGAACAC
*
27899557 AAAATTAATTTTAA
1 AAAATTAATCTTAA
27899571 AAAATTAATCTTAA
1 AAAATTAATCTTAA
27899585 AA
1 AA
27899587 TTTTATTTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (14 bp):
AAAATTAATCTTAA
Found at i:27900125 original size:33 final size:33
Alignment explanation
Indices: 27900087--27900166 Score: 97
Period size: 33 Copynumber: 2.4 Consensus size: 33
27900077 TATGCAAATG
* * * * *
27900087 AGCATGTCATATCATCATTAATTATGATATGTC
1 AGCATGCCACATCATAATCAATTATAATATGTC
* *
27900120 AGCATGCCACATCATAATCAATTATAATATTTT
1 AGCATGCCACATCATAATCAATTATAATATGTC
27900153 AGCATGCCACATCA
1 AGCATGCCACATCA
27900167 ATATCACTGA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.36, C:0.20, G:0.10, T:0.34
Consensus pattern (33 bp):
AGCATGCCACATCATAATCAATTATAATATGTC
Found at i:27903930 original size:23 final size:22
Alignment explanation
Indices: 27903904--27903949 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
27903894 TCTACCCTTC
*
27903904 CTTGTTTCCATTAGGCCTCTTTT
1 CTTGTTGCCATTAGGCC-CTTTT
* *
27903927 CTTGTTGCTATTGGGCCCTTTT
1 CTTGTTGCCATTAGGCCCTTTT
27903949 C
1 C
27903950 ATGGGCTCTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.07, C:0.26, G:0.17, T:0.50
Consensus pattern (22 bp):
CTTGTTGCCATTAGGCCCTTTT
Found at i:27907230 original size:18 final size:19
Alignment explanation
Indices: 27907200--27907236 Score: 67
Period size: 18 Copynumber: 2.0 Consensus size: 19
27907190 AGCCGACCTT
27907200 CTTTCTCTCTTTTTCTTTC
1 CTTTCTCTCTTTTTCTTTC
27907219 CTTTCT-TCTTTTTCTTTC
1 CTTTCTCTCTTTTTCTTTC
27907237 TCTCATTATC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (19 bp):
CTTTCTCTCTTTTTCTTTC
Done.