Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41236440
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2030548 characters in sequence are not A, C, G, or T
File 79 of 106
Found at i:30123100 original size:42 final size:42
Alignment explanation
Indices: 30123014--30123184 Score: 191
Period size: 42 Copynumber: 4.0 Consensus size: 42
30123004 CACTCTCTCA
* * * * *
30123014 TCATCATC-AGCTCATGTGCACTCCCCACTAGCACATGGCTGGG
1 TCATCATCGA-CTTATGCGCACT-CCCACTCGCACATAGCCGGG
*
30123057 TCATCATTGACTTATGCGCACTCCCACTCGCACATAGCCGGG
1 TCATCATCGACTTATGCGCACTCCCACTCGCACATAGCCGGG
* ** * *
30123099 TCATCATCGGCTTATGCGCACTCTTACTCGCACATAGTCGAG
1 TCATCATCGACTTATGCGCACTCCCACTCGCACATAGCCGGG
* * *
30123141 TCATCATCGACTTATGCACACTCCTACTCGCACATAGCTGGG
1 TCATCATCGACTTATGCGCACTCCCACTCGCACATAGCCGGG
30123183 TC
1 TC
30123185 CACATCAACA
Statistics
Matches: 109, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
42 91 0.83
43 17 0.16
44 1 0.01
ACGTcount: A:0.22, C:0.34, G:0.19, T:0.26
Consensus pattern (42 bp):
TCATCATCGACTTATGCGCACTCCCACTCGCACATAGCCGGG
Found at i:30129534 original size:22 final size:23
Alignment explanation
Indices: 30129500--30129543 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
30129490 GAGAAGCTAC
*
30129500 AATGTCATTCTCGCTGCAGCGAA
1 AATGTCATCCTCGCTGCAGCGAA
30129523 AATG-CATCCTCGCTGCAGCGA
1 AATGTCATCCTCGCTGCAGCGA
30129544 GTTTTTGGCC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.23
Consensus pattern (23 bp):
AATGTCATCCTCGCTGCAGCGAA
Found at i:30129862 original size:43 final size:43
Alignment explanation
Indices: 30129801--30129915 Score: 160
Period size: 43 Copynumber: 2.7 Consensus size: 43
30129791 CCCATCATCA
* * **
30129801 TCATCACCAGCTCATGCGCACTCCCTACTCGCATATGGCTGGG
1 TCATCACCAGCTTATGCGCACTCCCTACTCGCACATAACTGGG
*
30129844 TCATCACCAGGTTATGCGCACTCCCTACTCGCACATAACTGGG
1 TCATCACCAGCTTATGCGCACTCCCTACTCGCACATAACTGGG
*
30129887 TCATC-CTCAACTTATGCGCACTCCCTACT
1 TCATCAC-CAGCTTATGCGCACTCCCTACT
30129916 TGCAAATAGC
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
42 1 0.02
43 63 0.98
ACGTcount: A:0.21, C:0.37, G:0.17, T:0.25
Consensus pattern (43 bp):
TCATCACCAGCTTATGCGCACTCCCTACTCGCACATAACTGGG
Found at i:30131860 original size:20 final size:21
Alignment explanation
Indices: 30131837--30131882 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
30131827 CAGTACTACC
30131837 TCTTTTTAT-ACAAGAACCCT
1 TCTTTTTATCACAAGAACCCT
* *
30131857 TCTTCTTATCACAAGAACCGT
1 TCTTTTTATCACAAGAACCCT
30131878 TCTTT
1 TCTTT
30131883 ATTTTGACAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 8 0.36
21 14 0.64
ACGTcount: A:0.26, C:0.26, G:0.07, T:0.41
Consensus pattern (21 bp):
TCTTTTTATCACAAGAACCCT
Found at i:30132437 original size:8 final size:8
Alignment explanation
Indices: 30132424--30132456 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
30132414 TTCTTATTAG
30132424 AAAGAGAA
1 AAAGAGAA
30132432 AAAGAGAA
1 AAAGAGAA
30132440 AAAGAGAA
1 AAAGAGAA
*
30132448 AGAGAGAA
1 AAAGAGAA
30132456 A
1 A
30132457 GACTTACTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (8 bp):
AAAGAGAA
Found at i:30132457 original size:8 final size:8
Alignment explanation
Indices: 30132422--30132458 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
30132412 TGTTCTTATT
30132422 AGAAAGAG
1 AGAAAGAG
30132430 A-AAA-AG
1 AGAAAGAG
*
30132436 AGAAAAAG
1 AGAAAGAG
30132444 AGAAAGAG
1 AGAAAGAG
30132452 AGAAAGA
1 AGAAAGA
30132459 CTTACTTGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
6 3 0.12
7 6 0.23
8 17 0.65
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (8 bp):
AGAAAGAG
Found at i:30132659 original size:2 final size:2
Alignment explanation
Indices: 30132652--30132684 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
30132642 TTTTATTTAT
30132652 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
30132685 CCTCATGTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:30138601 original size:2 final size:2
Alignment explanation
Indices: 30138594--30138626 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
30138584 ATTCATTGAG
*
30138594 AT AT AT AT AT AT AT AT AT AT A- AT AG AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
30138627 GTAAAGTCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (2 bp):
AT
Found at i:30138830 original size:2 final size:2
Alignment explanation
Indices: 30138825--30138855 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
30138815 TTTACATTTT
30138825 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
30138856 TTAATTTTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:30139174 original size:2 final size:2
Alignment explanation
Indices: 30139167--30139204 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
30139157 CAGCTGTGTC
30139167 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
30139205 TCGAGAAAGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:30144503 original size:3 final size:3
Alignment explanation
Indices: 30144495--30144540 Score: 74
Period size: 3 Copynumber: 15.3 Consensus size: 3
30144485 ATATCTACCT
* *
30144495 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATG ATA AAA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
30144541 AAACTACGGA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:30162774 original size:39 final size:39
Alignment explanation
Indices: 30162731--30162818 Score: 124
Period size: 39 Copynumber: 2.3 Consensus size: 39
30162721 AAATTTATTT
* *
30162731 TATGTTATTGTTGATTCTCCCT-TATCCTCAACCTATAAA
1 TATGTTATTCTTGATT-TCACTCTATCCTCAACCTATAAA
* *
30162770 TATGTCATTCTTGATTTTACTCTATCCTCAACCTATAAA
1 TATGTTATTCTTGATTTCACTCTATCCTCAACCTATAAA
30162809 TATGTTATTC
1 TATGTTATTC
30162819 CCGATGTCAC
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
38 3 0.07
39 40 0.93
ACGTcount: A:0.26, C:0.22, G:0.07, T:0.45
Consensus pattern (39 bp):
TATGTTATTCTTGATTTCACTCTATCCTCAACCTATAAA
Found at i:30162795 original size:98 final size:98
Alignment explanation
Indices: 30162626--30162810 Score: 307
Period size: 98 Copynumber: 1.9 Consensus size: 98
30162616 TTGTATTTTT
* * ** *
30162626 TTTATTTTATGTTATTGTTGATTCTCCTTTATTCTCAGTCTATAAATACGTTATTCCTGATTTTA
1 TTTATTTTATGTTATTGTTGATTCTCCCTTATCCTCAACCTATAAATACGTCATTCCTGATTTTA
30162691 CTCTATCCTCAACCTATAAATACAGCTTATAAA
66 CTCTATCCTCAACCTATAAATACAGCTTATAAA
* *
30162724 TTTATTTTATGTTATTGTTGATTCTCCCTTATCCTCAACCTATAAATATGTCATTCTTGATTTTA
1 TTTATTTTATGTTATTGTTGATTCTCCCTTATCCTCAACCTATAAATACGTCATTCCTGATTTTA
30162789 CTCTATCCTCAACCTATAAATA
66 CTCTATCCTCAACCTATAAATA
30162811 TGTTATTCCC
Statistics
Matches: 80, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
98 80 1.00
ACGTcount: A:0.27, C:0.19, G:0.06, T:0.47
Consensus pattern (98 bp):
TTTATTTTATGTTATTGTTGATTCTCCCTTATCCTCAACCTATAAATACGTCATTCCTGATTTTA
CTCTATCCTCAACCTATAAATACAGCTTATAAA
Found at i:30165349 original size:28 final size:27
Alignment explanation
Indices: 30165313--30165365 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
30165303 ATATCCTGGT
*
30165313 GGTGGAAAATTACAATTTTGCCCCTGA
1 GGTGGAAAATTACAATTTTACCCCTGA
*
30165340 GGTGGCAAAATTACCATTTTACCCCT
1 GGTGG-AAAATTACAATTTTACCCCT
30165366 ATACTCCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 5 0.22
28 18 0.78
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (27 bp):
GGTGGAAAATTACAATTTTACCCCTGA
Found at i:30165433 original size:20 final size:20
Alignment explanation
Indices: 30165410--30165455 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
30165400 CTTCTAAACC
30165410 TCAAATCATACT-TCAATAAG
1 TCAAATCATACTCT-AATAAG
*
30165430 TCAAATTATACTCTAATAAG
1 TCAAATCATACTCTAATAAG
30165450 TCAAAT
1 TCAAAT
30165456 GGGGTCAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 23 0.96
21 1 0.04
ACGTcount: A:0.46, C:0.17, G:0.04, T:0.33
Consensus pattern (20 bp):
TCAAATCATACTCTAATAAG
Found at i:30173391 original size:28 final size:27
Alignment explanation
Indices: 30173352--30173404 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
30173342 ATGTCATGGT
*
30173352 GGTGGAAAATTACAATTTTGCCCTTGG
1 GGTGGAAAATTACAATTTTACCCTTGG
*
30173379 GGTGGCAAAATTACCATTTTACCCTT
1 GGTGG-AAAATTACAATTTTACCCTT
30173405 TTACTCCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 5 0.22
28 18 0.78
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (27 bp):
GGTGGAAAATTACAATTTTACCCTTGG
Found at i:30174909 original size:36 final size:36
Alignment explanation
Indices: 30174851--30174923 Score: 94
Period size: 36 Copynumber: 2.0 Consensus size: 36
30174841 TTTTATTTTC
* *
30174851 TCTTGATTTTCTACAACGTTATTCCTGATTCTCCTT
1 TCTTGATTTTCTACAACATTATTCCTAATTCTCCTT
* *
30174887 TCTTGATCTTT-TGCAACATTATTCCTAATTTTCCTT
1 TCTTGAT-TTTCTACAACATTATTCCTAATTCTCCTT
30174923 T
1 T
30174924 ATCCTCAGCC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
36 29 0.91
37 3 0.09
ACGTcount: A:0.18, C:0.23, G:0.07, T:0.52
Consensus pattern (36 bp):
TCTTGATTTTCTACAACATTATTCCTAATTCTCCTT
Found at i:30175234 original size:142 final size:141
Alignment explanation
Indices: 30174888--30175252 Score: 357
Period size: 142 Copynumber: 2.6 Consensus size: 141
30174878 ATTCTCCTTT
* *
30174888 CTTGATCTTTTGCAACATTATTCCTAATT-TTCCTT-TATCCTCAGCCTATAAATACCAGCC-CC
1 CTTGAT-TTTTGCAACATTATTTCTAATTCTT--TTCTATCCTCAACCTATAAATACCAGCCTCC
* * ** *
30174950 TACCTCAGTTCTCAACACAATTCAACTTTTACATGTTTTCTTCTCAACTTGTATAACGCTCTAAA
63 -ACCTCAGTTCTCAACACAACTCAACTTTCACAACTTCTCTTCTCAACTTGTATAACGCTCTAAA
* * * *
30175015 TTTTTTTTATTTTCT
127 ATCTTTTGATTTTCC
* * * * ** *
30175030 CTTGATTTTTTGCAACGTTA-TTCGTAATTCTCTTCTATTCTTAACCTATAAATGTCAACCTCCA
1 CTTGA-TTTTTGCAACATTATTTC-TAATTCTTTTCTATCCTCAACCTATAAATACCAGCCTCCA
* * * * *
30175094 CTTCAGTTCTCAACTCACCTCAA-TTCTCACAACTTCTCTTTTCAACTTGTATAACGTTAC-AAA
64 CCTCAGTTCTCAACACAACTCAACTT-TCACAACTTCTCTTCTCAACTTGTATAACGCT-CTAAA
30175157 ATCTTTTGATTTTCC
127 ATCTTTTGATTTTCC
* *
30175172 CTTGATTTTCTGCAACATTATTTCTGATTCTTTTCTATCCTCAACTTATAAATACCAGCCTCCAC
1 CTTGATTTT-TGCAACATTATTTCTAATTCTTTTCTATCCTCAACCTATAAATACCAGCCTCCAC
*
30175237 CTTAGTTAC-CAACACA
65 CTCAGTT-CTCAACACA
30175253 CCTTAGCTCT
Statistics
Matches: 178, Mismatches: 35, Indels: 20
0.76 0.15 0.09
Matches are distributed among these distances:
141 10 0.06
142 159 0.89
143 9 0.05
ACGTcount: A:0.25, C:0.27, G:0.06, T:0.42
Consensus pattern (141 bp):
CTTGATTTTTGCAACATTATTTCTAATTCTTTTCTATCCTCAACCTATAAATACCAGCCTCCACC
TCAGTTCTCAACACAACTCAACTTTCACAACTTCTCTTCTCAACTTGTATAACGCTCTAAAATCT
TTTGATTTTCC
Found at i:30177331 original size:2 final size:2
Alignment explanation
Indices: 30177324--30177375 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
30177314 TTGCCAACAT
30177324 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
30177366 TA TA TA TA TA
1 TA TA TA TA TA
30177376 ATTAATTAGA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:30177830 original size:8 final size:7
Alignment explanation
Indices: 30177808--30177875 Score: 52
Period size: 8 Copynumber: 9.6 Consensus size: 7
30177798 ATAATGAATG
30177808 AAAAT-A
1 AAAATAA
30177814 AAAATAA
1 AAAATAA
30177821 AAACATAA
1 AAA-ATAA
30177829 AAAAT-A
1 AAAATAA
*
30177835 GAAATAA
1 AAAATAA
*
30177842 ATTAA-AA
1 A-AAATAA
*
30177849 ATAATAA
1 AAAATAA
30177856 AATAATAA
1 AA-AATAA
30177864 AAAATATA
1 AAAATA-A
30177872 AAAA
1 AAAA
30177876 AAGGGAAATA
Statistics
Matches: 51, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
6 13 0.25
7 17 0.33
8 21 0.41
ACGTcount: A:0.78, C:0.01, G:0.01, T:0.19
Consensus pattern (7 bp):
AAAATAA
Found at i:30177849 original size:18 final size:15
Alignment explanation
Indices: 30177808--30177869 Score: 53
Period size: 14 Copynumber: 4.4 Consensus size: 15
30177798 ATAATGAATG
30177808 AAAAT-AAA-AATAA
1 AAAATAAAATAATAA
30177821 AAACATAAAA-AAT-A
1 AAA-ATAAAATAATAA
* *
30177835 GAAATAAATTAA-AA
1 AAAATAAAATAATAA
*
30177849 ATAATAAAATAATAA
1 AAAATAAAATAATAA
30177864 AAAATA
1 AAAATA
30177870 TAAAAAAAGG
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
13 8 0.21
14 17 0.45
15 13 0.34
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.19
Consensus pattern (15 bp):
AAAATAAAATAATAA
Found at i:30177872 original size:17 final size:16
Alignment explanation
Indices: 30177813--30177874 Score: 54
Period size: 17 Copynumber: 3.7 Consensus size: 16
30177803 GAATGAAAAT
*
30177813 AAAAATAAAAA-CATA
1 AAAAATAAAAATAATA
* *
30177828 AAAAATAGAAATAAATT
1 AAAAATAAAAAT-AATA
30177845 AAAAATAATAAAATAATA
1 AAAAAT-A-AAAATAATA
30177863 AAAAATATAAAA
1 AAAAATA-AAAA
30177875 AAAGGGAAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
15 10 0.26
17 14 0.37
18 10 0.26
19 4 0.11
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.19
Consensus pattern (16 bp):
AAAAATAAAAATAATA
Found at i:30177876 original size:9 final size:9
Alignment explanation
Indices: 30177819--30177876 Score: 50
Period size: 9 Copynumber: 6.6 Consensus size: 9
30177809 AAATAAAAAT
*
30177819 AAAAACATA
1 AAAAATATA
*
30177828 AAAAATAGA
1 AAAAATATA
30177837 AATAAAT-T-
1 AA-AAATATA
30177845 AAAAATA-A
1 AAAAATATA
*
30177853 TAAAATAATA
1 AAAAAT-ATA
30177863 AAAAATATA
1 AAAAATATA
30177872 AAAAA
1 AAAAA
30177877 AGGGAAATAA
Statistics
Matches: 39, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
7 4 0.10
8 7 0.18
9 18 0.46
10 10 0.26
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.19
Consensus pattern (9 bp):
AAAAATATA
Found at i:30178438 original size:26 final size:25
Alignment explanation
Indices: 30178405--30178458 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 25
30178395 CGACCGGGAG
30178405 AAAGGAAAGAAGGAGAA-AAAGAAAGA
1 AAAGG-AA-AAGGAGAAGAAAGAAAGA
30178431 AAAGGAAAAGGAGAAGGAAAGAAAGA
1 AAAGGAAAAGGAGAA-GAAAGAAAGA
30178457 AA
1 AA
30178459 GAAAAAAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
24 8 0.31
25 2 0.08
26 16 0.62
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (25 bp):
AAAGGAAAAGGAGAAGAAAGAAAGA
Found at i:30178465 original size:26 final size:24
Alignment explanation
Indices: 30178403--30178473 Score: 72
Period size: 26 Copynumber: 2.8 Consensus size: 24
30178393 GTCGACCGGG
*
30178403 AGAAAGGAAAGAAGGAGAAAAAGAA
1 AGAAA-GAAAAAAGGAGAAAAAGAA
*
30178428 AGAAA-AGGAAAAGGAGAAGGAAAGAA
1 AGAAAGA-AAAAAGGAGAA--AAAGAA
*
30178454 AGAAAGAAAAAAAGAGAAAA
1 AGAAAGAAAAAAGGAGAAAA
30178474 GGAGAGAAGA
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
23 1 0.03
24 11 0.29
25 5 0.13
26 20 0.53
27 1 0.03
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (24 bp):
AGAAAGAAAAAAGGAGAAAAAGAA
Found at i:30179723 original size:12 final size:12
Alignment explanation
Indices: 30179689--30179744 Score: 60
Period size: 12 Copynumber: 4.7 Consensus size: 12
30179679 TTTTGTCATT
*
30179689 TTTTATTATTTA
1 TTTTATTTTTTA
*
30179701 -ATTATTATTTTA
1 TTTTATT-TTTTA
30179713 TTTTATTTTTTA
1 TTTTATTTTTTA
**
30179725 TCATATTTTTTA
1 TTTTATTTTTTA
30179737 TTTTATTT
1 TTTTATTT
30179745 CTAATTGTTA
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
11 5 0.14
12 25 0.71
13 5 0.14
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (12 bp):
TTTTATTTTTTA
Found at i:30179724 original size:24 final size:24
Alignment explanation
Indices: 30179689--30179770 Score: 71
Period size: 24 Copynumber: 3.4 Consensus size: 24
30179679 TTTTGTCATT
*
30179689 TTTTATTATTTAATTATTATTTTA
1 TTTTATTTTTTAATTATTATTTTA
30179713 TTTTATTTTTT-ATCATATT-TTTTA
1 TTTTATTTTTTAAT--TATTATTTTA
* * *
30179737 TTTTA-TTTCTAATTGTTATTATTC
1 TTTTATTTTTTAATTATTATT-TTA
30179761 TTTATATTTT
1 TTT-TATTTT
30179771 ACATTTTTTA
Statistics
Matches: 47, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
22 3 0.06
23 8 0.17
24 27 0.57
25 6 0.13
26 3 0.06
ACGTcount: A:0.23, C:0.04, G:0.01, T:0.72
Consensus pattern (24 bp):
TTTTATTTTTTAATTATTATTTTA
Found at i:30179771 original size:30 final size:28
Alignment explanation
Indices: 30179705--30179771 Score: 73
Period size: 30 Copynumber: 2.3 Consensus size: 28
30179695 TATTTAATTA
* *
30179705 TTATTTTATTTTATTTTTTATCATATTTT
1 TTATTTTATTTTAATTGTTAT-ATATTTT
30179734 TTATTTTATTTCTAATTGTTAT-TATTCTT
1 TTATTTTATTT-TAATTGTTATATATT-TT
30179763 TATATTTTA
1 T-TATTTTA
30179772 CATTTTTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
28 4 0.12
29 14 0.42
30 15 0.45
ACGTcount: A:0.22, C:0.04, G:0.01, T:0.72
Consensus pattern (28 bp):
TTATTTTATTTTAATTGTTATATATTTT
Found at i:30179880 original size:9 final size:8
Alignment explanation
Indices: 30179863--30179923 Score: 68
Period size: 9 Copynumber: 7.0 Consensus size: 8
30179853 AAGAATTTTA
*
30179863 TTATTTTT
1 TTATATTT
30179871 TTACTATTTT
1 TTA-TA-TTT
30179881 TTATATTT
1 TTATATTT
30179889 TTATATTAT
1 TTATATT-T
30179898 TTATTATTT
1 TTA-TATTT
30179907 TTATATTTT
1 TTATA-TTT
30179916 TTATATTT
1 TTATATTT
30179924 CGATTATTAT
Statistics
Matches: 47, Mismatches: 1, Indels: 10
0.81 0.02 0.17
Matches are distributed among these distances:
8 18 0.38
9 19 0.40
10 10 0.21
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (8 bp):
TTATATTT
Found at i:30179906 original size:27 final size:27
Alignment explanation
Indices: 30179857--30179922 Score: 82
Period size: 27 Copynumber: 2.4 Consensus size: 27
30179847 GTGGACAAGA
*
30179857 ATTTTATTAT-TTTTTTACTATTTTT-T
1 ATTTT-TTATATTATTTACTATTTTTAT
*
30179883 ATATTTTTATATTATTTATTATTTTTAT
1 AT-TTTTTATATTATTTACTATTTTTAT
30179911 ATTTTTTATATT
1 ATTTTTTATATT
30179923 TCGATTATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
26 6 0.17
27 26 0.74
28 3 0.09
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (27 bp):
ATTTTTTATATTATTTACTATTTTTAT
Found at i:30179931 original size:18 final size:17
Alignment explanation
Indices: 30179857--30179923 Score: 89
Period size: 18 Copynumber: 3.8 Consensus size: 17
30179847 GTGGACAAGA
*
30179857 ATTTTATTATTTTTTTACT
1 ATTTT-TTATATTTTTA-T
30179876 ATTTTTTATATTTTTAT
1 ATTTTTTATATTTTTAT
*
30179893 ATTATTTATTATTTTTAT
1 ATTTTTTA-TATTTTTAT
30179911 ATTTTTTATATTT
1 ATTTTTTATATTT
30179924 CGATTATTAT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
17 13 0.30
18 26 0.59
19 5 0.11
ACGTcount: A:0.24, C:0.01, G:0.00, T:0.75
Consensus pattern (17 bp):
ATTTTTTATATTTTTAT
Found at i:30179949 original size:35 final size:34
Alignment explanation
Indices: 30179860--30179952 Score: 102
Period size: 35 Copynumber: 2.7 Consensus size: 34
30179850 GACAAGAATT
* **
30179860 TTATTATTT-TT-TTACTATTTTTTATATTTTTA
1 TTATTATTTATTATTATTATTTTTTATATTTCGA
*
30179892 -TATTATTTATTATTTTTATATTTTTTATATTTCGA
1 TTATTATTTATTA-TTAT-TATTTTTTATATTTCGA
30179927 TTATTATATTATTATTATTATTTTTT
1 TTATTAT-TTATTATTATTATTTTTT
30179953 GTAAGCAATC
Statistics
Matches: 50, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
31 8 0.16
32 2 0.04
34 2 0.04
35 23 0.46
36 9 0.18
37 6 0.12
ACGTcount: A:0.25, C:0.02, G:0.01, T:0.72
Consensus pattern (34 bp):
TTATTATTTATTATTATTATTTTTTATATTTCGA
Found at i:30180259 original size:48 final size:48
Alignment explanation
Indices: 30180184--30180287 Score: 117
Period size: 48 Copynumber: 2.1 Consensus size: 48
30180174 CTTTTCATAC
30180184 ATTTATTATATATATACATTTAAATTATTAT-TATCATTT-TTATTTT-TT
1 ATTTATTATATATATA-ATTTAAATTATT-TGT-TCATTTATTATTTTATT
* *
30180232 ATTTATTATATATAT-ATTTACCTATTATTTGTTTATTTATTATTTTATT
1 ATTTATTATATATATAATTTA--AATTATTTGTTCATTTATTATTTTATT
30180281 ATTTATT
1 ATTTATT
30180288 TTTTTGAATG
Statistics
Matches: 49, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
46 5 0.10
47 6 0.12
48 29 0.59
49 9 0.18
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (48 bp):
ATTTATTATATATATAATTTAAATTATTTGTTCATTTATTATTTTATT
Found at i:30180292 original size:15 final size:15
Alignment explanation
Indices: 30180207--30180291 Score: 61
Period size: 15 Copynumber: 5.5 Consensus size: 15
30180197 ATACATTTAA
*
30180207 ATTATTATTATCATTT
1 ATTATT-TTATTATTT
30180223 -TTATTTT-TTATTT
1 ATTATTTTATTATTT
**
30180236 ATTATATATATATTTACCT
1 ATTAT-T-T-TA-TTATTT
30180255 ATTATTTGT-TTATTT
1 ATTATTT-TATTATTT
30180270 ATTATTTTATTATTT
1 ATTATTTTATTATTT
30180285 ATT-TTTT
1 ATTATTTT
30180292 TGAATGATTT
Statistics
Matches: 56, Mismatches: 6, Indels: 16
0.72 0.08 0.21
Matches are distributed among these distances:
13 5 0.09
14 11 0.20
15 26 0.46
16 1 0.02
17 3 0.05
18 1 0.02
19 9 0.16
ACGTcount: A:0.26, C:0.04, G:0.01, T:0.69
Consensus pattern (15 bp):
ATTATTTTATTATTT
Found at i:30180505 original size:28 final size:28
Alignment explanation
Indices: 30180465--30180522 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
30180455 CAATAAATTA
*
30180465 TATTTGTAATTAATATCGTGGTATTTTT
1 TATTTGTAATTAATATCATGGTATTTTT
30180493 TATTTGTAATTAATATCATGGTATTTTT
1 TATTTGTAATTAATATCATGGTATTTTT
30180521 TA
1 TA
30180523 AAAGTTAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.28, C:0.03, G:0.12, T:0.57
Consensus pattern (28 bp):
TATTTGTAATTAATATCATGGTATTTTT
Found at i:30190531 original size:15 final size:15
Alignment explanation
Indices: 30190511--30190556 Score: 69
Period size: 15 Copynumber: 3.1 Consensus size: 15
30190501 TTCTTAAAAT
30190511 AACTTTAAAA-CTAAA
1 AACTTTAAAATCT-AA
30190526 AACTTTAAAATCTAA
1 AACTTTAAAATCTAA
30190541 AACTTTAAAATC-AA
1 AACTTTAAAATCTAA
30190555 AA
1 AA
30190557 TCTCTTATCT
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
14 4 0.13
15 24 0.80
16 2 0.07
ACGTcount: A:0.59, C:0.13, G:0.00, T:0.28
Consensus pattern (15 bp):
AACTTTAAAATCTAA
Found at i:30191981 original size:13 final size:13
Alignment explanation
Indices: 30191963--30191987 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
30191953 TTCCAAAAAA
30191963 TTTATAAAATCAT
1 TTTATAAAATCAT
30191976 TTTATAAAATCA
1 TTTATAAAATCA
30191988 CAATTTCTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTATAAAATCAT
Found at i:30198017 original size:19 final size:20
Alignment explanation
Indices: 30197988--30198027 Score: 73
Period size: 19 Copynumber: 2.0 Consensus size: 20
30197978 TCACTTTTAA
30197988 ACTTCAAATCATACTCCAAT
1 ACTTCAAATCATACTCCAAT
30198008 ACTT-AAATCATACTCCAAT
1 ACTTCAAATCATACTCCAAT
30198027 A
1 A
30198028 AGTCAAATGG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.42, C:0.28, G:0.00, T:0.30
Consensus pattern (20 bp):
ACTTCAAATCATACTCCAAT
Found at i:30200440 original size:19 final size:20
Alignment explanation
Indices: 30200413--30200459 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
30200403 AGGAGACAAG
*
30200413 ATAAAATTTTTA-GAATAAA
1 ATAATATTTTTATGAATAAA
* *
30200432 ATAATATTTTTATTAATTAA
1 ATAATATTTTTATGAATAAA
30200452 ATAATATT
1 ATAATATT
30200460 AAAATATTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 11 0.46
20 13 0.54
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (20 bp):
ATAATATTTTTATGAATAAA
Found at i:30201327 original size:34 final size:35
Alignment explanation
Indices: 30201237--30201327 Score: 123
Period size: 34 Copynumber: 2.7 Consensus size: 35
30201227 CCATTTAAGG
* *
30201237 GCTGATTTTGGAGGCTGAAAAG-AGCCATTTTTTT
1 GCTGGTTTTGGAGGCTAAAAAGTAGCCATTTTTTT
* *
30201271 GCTAGTTTTGGAGGCTAGAAAGTA-CCATTTTTTT
1 GCTGGTTTTGGAGGCTAAAAAGTAGCCATTTTTTT
*
30201305 GCTGGTTTTGGAGGCCAAAAAGT
1 GCTGGTTTTGGAGGCTAAAAAGT
30201328 GCAGAATTTT
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
34 48 0.98
35 1 0.02
ACGTcount: A:0.24, C:0.12, G:0.27, T:0.36
Consensus pattern (35 bp):
GCTGGTTTTGGAGGCTAAAAAGTAGCCATTTTTTT
Found at i:30201460 original size:34 final size:34
Alignment explanation
Indices: 30201422--30201500 Score: 122
Period size: 34 Copynumber: 2.3 Consensus size: 34
30201412 TTAAGGGCTG
*
30201422 GTTTTAGAGGCTGAAAAGAGCCATTTTTCTGCTA
1 GTTTTGGAGGCTGAAAAGAGCCATTTTTCTGCTA
* * *
30201456 GTTTTGGAGGCTGGAAAGTGCCATTTTTCTGCTG
1 GTTTTGGAGGCTGAAAAGAGCCATTTTTCTGCTA
30201490 GTTTTGGAGGC
1 GTTTTGGAGGC
30201501 CAAAAACTGT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 41 1.00
ACGTcount: A:0.19, C:0.14, G:0.30, T:0.37
Consensus pattern (34 bp):
GTTTTGGAGGCTGAAAAGAGCCATTTTTCTGCTA
Found at i:30201482 original size:181 final size:180
Alignment explanation
Indices: 30201172--30201534 Score: 600
Period size: 181 Copynumber: 2.0 Consensus size: 180
30201162 AACAAAAGGA
* *
30201172 AAAGAGAGTTGAGTTGAGGGGCTGTTTTTGCTACCATTCAAGAAGGAAAAGAGAGCCATTTAAGG
1 AAAGAGAGCTGAGTTAAGGGGCTGTTTTTGCTACCATTCAAGAAGGAAAAGAGAGCCATTTAAGG
* *
30201237 GCTGATTTTGGAGGCTGAAAAGAGCCATTTTTTTGCTAGTTTTGGAGGCTAGAAAGTACCATTTT
66 GCTGATTTTAGAGGCTGAAAAGAGCCATTTTTCTGCTAGTTTTGGAGGCTAGAAAGTACCATTTT
* * * *
30201302 TTTGCTGGTTTTGGAGGCCAAAAAGTGCAGAATTTTGCAGCAGAAAATTG
131 TCTGCTGGTTTTGGAGGCCAAAAACTGCAAAATTTTACAGCAGAAAATTG
*
30201352 NAAAGAGAGCTGAGTTAAGGGGTTGTTTTTGCTACCATTCAAGAAGGAAAAGAGAGCCATTTAAG
1 -AAAGAGAGCTGAGTTAAGGGGCTGTTTTTGCTACCATTCAAGAAGGAAAAGAGAGCCATTTAAG
* * *
30201417 GGCTGGTTTTAGAGGCTGAAAAGAGCCATTTTTCTGCTAGTTTTGGAGGCTGGAAAGTGCCATTT
65 GGCTGATTTTAGAGGCTGAAAAGAGCCATTTTTCTGCTAGTTTTGGAGGCTAGAAAGTACCATTT
*
30201482 TTCTGCTGGTTTTGGAGGCCAAAAACTGTAAAATTTTACAGCAGAAAATTG
130 TTCTGCTGGTTTTGGAGGCCAAAAACTGCAAAATTTTACAGCAGAAAATTG
30201533 AA
1 AA
30201535 GGTTTTGAGG
Statistics
Matches: 169, Mismatches: 13, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
180 2 0.01
181 167 0.99
ACGTcount: A:0.30, C:0.12, G:0.28, T:0.30
Consensus pattern (180 bp):
AAAGAGAGCTGAGTTAAGGGGCTGTTTTTGCTACCATTCAAGAAGGAAAAGAGAGCCATTTAAGG
GCTGATTTTAGAGGCTGAAAAGAGCCATTTTTCTGCTAGTTTTGGAGGCTAGAAAGTACCATTTT
TCTGCTGGTTTTGGAGGCCAAAAACTGCAAAATTTTACAGCAGAAAATTG
Found at i:30201673 original size:33 final size:34
Alignment explanation
Indices: 30201619--30201684 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 34
30201609 AGTTGCTGAA
30201619 ATTTTAAGAAAAAACAGAGCAAC-ATAGCTGCTG
1 ATTTTAAGAAAAAACAGAGCAACTATAGCTGCTG
* * *
30201652 ATTTTGAAGCAAAAATA-AGCAACTTTAGCTGCT
1 ATTTT-AAGAAAAAACAGAGCAACTATAGCTGCT
30201685 TAAAAATTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
33 11 0.39
34 17 0.61
ACGTcount: A:0.42, C:0.15, G:0.17, T:0.26
Consensus pattern (34 bp):
ATTTTAAGAAAAAACAGAGCAACTATAGCTGCTG
Found at i:30201826 original size:5 final size:5
Alignment explanation
Indices: 30201816--30201858 Score: 77
Period size: 5 Copynumber: 8.6 Consensus size: 5
30201806 GGTGGGAGAG
*
30201816 AAAGA AAAGA AAAGA AAAGA AAAGA AAAGA AAGGA AAAGA AAA
1 AAAGA AAAGA AAAGA AAAGA AAAGA AAAGA AAAGA AAAGA AAA
30201859 TAACAAGGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
5 36 1.00
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (5 bp):
AAAGA
Found at i:30206031 original size:20 final size:21
Alignment explanation
Indices: 30206008--30206056 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 21
30205998 AATTTTATGT
*
30206008 TTTCAAAT-AAAATTGCATGG
1 TTTCAAATCAAAATAGCATGG
30206028 TTTCAAATCAAAATAGCATGG
1 TTTCAAATCAAAATAGCATGG
30206049 TTTGCAAA
1 TTT-CAAA
30206057 ATACTCTTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 8 0.31
21 14 0.54
22 4 0.15
ACGTcount: A:0.41, C:0.12, G:0.14, T:0.33
Consensus pattern (21 bp):
TTTCAAATCAAAATAGCATGG
Found at i:30210483 original size:28 final size:28
Alignment explanation
Indices: 30210452--30210528 Score: 118
Period size: 28 Copynumber: 2.8 Consensus size: 28
30210442 ATTTGGAGTA
*
30210452 TAGGGGTAAAATGGTAATTTTGCCATTC
1 TAGGGGTAAAATGGTAATTTTACCATTC
30210480 TAGGGGTAAAATGGTAATTTTACCATTC
1 TAGGGGTAAAATGGTAATTTTACCATTC
* * *
30210508 CAGGGGCAAAATTGTAATTTT
1 TAGGGGTAAAATGGTAATTTT
30210529 CCACCACCAG
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.31, C:0.10, G:0.23, T:0.35
Consensus pattern (28 bp):
TAGGGGTAAAATGGTAATTTTACCATTC
Found at i:30229322 original size:2 final size:2
Alignment explanation
Indices: 30229310--30229438 Score: 106
Period size: 2 Copynumber: 64.5 Consensus size: 2
30229300 GAAGAGAAAA
30229310 AT AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * * * * * *
30229350 AT AA AGT GAT -T AC AT A- AA AA AC GT AA AT GGT ANT AT -T GAT AT
1 AT AT A-T -AT AT AT AT AT AT AT AT AT AT AT -AT A-T AT AT -AT AT
30229392 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
30229434 AT AT A
1 AT AT A
30229439 AAAAGAAGAG
Statistics
Matches: 105, Mismatches: 12, Indels: 20
0.77 0.09 0.15
Matches are distributed among these distances:
1 5 0.05
2 94 0.90
3 5 0.05
4 1 0.01
ACGTcount: A:0.50, C:0.02, G:0.05, T:0.43
Consensus pattern (2 bp):
AT
Found at i:30231120 original size:20 final size:18
Alignment explanation
Indices: 30231095--30231133 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
30231085 TTGTACAATA
30231095 TTTATTTATTCAATTATATT
1 TTTATTT-TT-AATTATATT
*
30231115 TTTATTTTTTATTATATT
1 TTTATTTTTAATTATATT
30231133 T
1 T
30231134 AAATGAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 9 0.50
19 2 0.11
20 7 0.39
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTATTTTTAATTATATT
Found at i:30231545 original size:12 final size:12
Alignment explanation
Indices: 30231528--30231568 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
30231518 TTTAAAATCT
30231528 ATAATTATAAAA
1 ATAATTATAAAA
30231540 ATAATTATAATAA
1 ATAATTATAA-AA
**
30231553 ATAAAAATAAAA
1 ATAATTATAAAA
30231565 ATAA
1 ATAA
30231569 CATCAAATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
12 16 0.62
13 10 0.38
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (12 bp):
ATAATTATAAAA
Found at i:30234840 original size:14 final size:15
Alignment explanation
Indices: 30234821--30234849 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
30234811 ACGCCTCAAA
30234821 TTTCTTCTTT-TTTT
1 TTTCTTCTTTCTTTT
30234835 TTTCTTCTTTCTTTT
1 TTTCTTCTTTCTTTT
30234850 ATTATTATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTCTTCTTTCTTTT
Found at i:30236767 original size:126 final size:127
Alignment explanation
Indices: 30236583--30236842 Score: 414
Period size: 126 Copynumber: 2.1 Consensus size: 127
30236573 TAAGAAGATC
*
30236583 TACTCATTTCTCAATATACATAGCACACAGTCATCATTGAATAAACAAATCAACTGAATTTAACA
1 TACTGATTTCTCAATATACATAGCACACAGTCATCATTGAATAAACAAATCAACTGAATTTAACA
* * *
30236648 ACTTTTAGC-ATTCATTTTATATATAAAAAATATATACTACTAGAAATTAGTAACTATTTTA
66 ACATTTAGCTATTCATTTTATATATAAAAAACAAATACTACTAGAAATTAGTAACTATTTTA
* * * *
30236709 TACTGATTTCTCAATATACATAGCACATAGTCATCATTGAATAAATAAATCAATTGAATTTGACA
1 TACTGATTTCTCAATATACATAGCACACAGTCATCATTGAATAAACAAATCAACTGAATTTAACA
* *
30236774 ACATTTAGCTATTCATTTTATATATAAAAGACAAATGCTACTAGAAATTAGTAACTATTTTA
66 ACATTTAGCTATTCATTTTATATATAAAAAACAAATACTACTAGAAATTAGTAACTATTTTA
*
30236836 TATTGAT
1 TACTGAT
30236843 AAAATATTTA
Statistics
Matches: 122, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
126 68 0.56
127 54 0.44
ACGTcount: A:0.42, C:0.14, G:0.07, T:0.37
Consensus pattern (127 bp):
TACTGATTTCTCAATATACATAGCACACAGTCATCATTGAATAAACAAATCAACTGAATTTAACA
ACATTTAGCTATTCATTTTATATATAAAAAACAAATACTACTAGAAATTAGTAACTATTTTA
Found at i:30239710 original size:38 final size:38
Alignment explanation
Indices: 30239652--30239861 Score: 318
Period size: 37 Copynumber: 5.6 Consensus size: 38
30239642 NNNNNNNNNN
*
30239652 TCCTCAAAGCTGAGGCAACGAGACTTTTAAAAATGAAC
1 TCCTCAAAGCTGAGGCAACGAAACTTTTAAAAATGAAC
* * *
30239690 TCCTTATAGCTGAGGCAACGAGACTTTTAAAAATGAAC
1 TCCTCAAAGCTGAGGCAACGAAACTTTTAAAAATGAAC
30239728 TCCTCAAAGCTGAGGCAACGAAACTTTT-AAAATGAAC
1 TCCTCAAAGCTGAGGCAACGAAACTTTTAAAAATGAAC
* *
30239765 ACCTTAAAGCTGAGGCAACGAAACTTTT-AAAATGAAC
1 TCCTCAAAGCTGAGGCAACGAAACTTTTAAAAATGAAC
30239802 TCCTCAAAGCTGAGGCAACGAAAC-TTTAAAAATGAAC
1 TCCTCAAAGCTGAGGCAACGAAACTTTTAAAAATGAAC
* **
30239839 TCCTCAAAACTGAGATAACGAAA
1 TCCTCAAAGCTGAGGCAACGAAA
30239862 TATTTTTTTC
Statistics
Matches: 159, Mismatches: 12, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
36 3 0.02
37 95 0.60
38 61 0.38
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.21
Consensus pattern (38 bp):
TCCTCAAAGCTGAGGCAACGAAACTTTTAAAAATGAAC
Found at i:30240038 original size:11 final size:14
Alignment explanation
Indices: 30240006--30240037 Score: 50
Period size: 12 Copynumber: 2.4 Consensus size: 14
30239996 TCATCAGTTT
30240006 TTTTTTTATTATTA
1 TTTTTTTATTATTA
30240020 TTTTTTTA-TA-TA
1 TTTTTTTATTATTA
30240032 TTTTTT
1 TTTTTT
30240038 ACTCCGTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 8 0.44
13 2 0.11
14 8 0.44
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTTTTTATTATTA
Found at i:30245795 original size:19 final size:19
Alignment explanation
Indices: 30245771--30245833 Score: 58
Period size: 17 Copynumber: 3.3 Consensus size: 19
30245761 TTTCCCTCTT
30245771 TCTCTCACCCGTCTTCCCCTC
1 TCTCTCACCCGTCTT-CCC-C
* **
30245792 TCTCTCAGCCG-C-TCTGC
1 TCTCTCACCCGTCTTCCCC
*
30245809 TCTCTCACCCGTTTTCCCC
1 TCTCTCACCCGTCTTCCCC
30245828 TCTCTC
1 TCTCTC
30245834 TCAGCCGCTC
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
17 11 0.33
18 1 0.03
19 10 0.30
20 1 0.03
21 10 0.30
ACGTcount: A:0.05, C:0.52, G:0.08, T:0.35
Consensus pattern (19 bp):
TCTCTCACCCGTCTTCCCC
Found at i:30245797 original size:21 final size:21
Alignment explanation
Indices: 30245762--30245836 Score: 70
Period size: 21 Copynumber: 3.7 Consensus size: 21
30245752 TCTTTCTCCT
*
30245762 TTCCCTCTTTCTCTCACCCGTC
1 TTCCC-CTCTCTCTCACCCGTC
*
30245784 TTCCCCTCTCTCTCAGCCG-C
1 TTCCCCTCTCTCTCACCCGTC
*
30245804 -T---CTGCTCTCTCACCCGTT
1 TTCCCCT-CTCTCTCACCCGTC
30245822 TTCCCCTCTCTCTCA
1 TTCCCCTCTCTCTCA
30245837 GCCGCTCTAC
Statistics
Matches: 43, Mismatches: 4, Indels: 13
0.72 0.07 0.22
Matches are distributed among these distances:
16 2 0.05
17 11 0.26
19 2 0.05
20 1 0.02
21 20 0.47
22 7 0.16
ACGTcount: A:0.05, C:0.51, G:0.07, T:0.37
Consensus pattern (21 bp):
TTCCCCTCTCTCTCACCCGTC
Found at i:30245826 original size:38 final size:38
Alignment explanation
Indices: 30245771--30245844 Score: 139
Period size: 38 Copynumber: 1.9 Consensus size: 38
30245761 TTTCCCTCTT
30245771 TCTCTCACCCGTCTTCCCCTCTCTCTCAGCCGCTCTGC
1 TCTCTCACCCGTCTTCCCCTCTCTCTCAGCCGCTCTGC
*
30245809 TCTCTCACCCGTTTTCCCCTCTCTCTCAGCCGCTCT
1 TCTCTCACCCGTCTTCCCCTCTCTCTCAGCCGCTCT
30245845 ACTTCTACTA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.05, C:0.51, G:0.09, T:0.34
Consensus pattern (38 bp):
TCTCTCACCCGTCTTCCCCTCTCTCTCAGCCGCTCTGC
Found at i:30245862 original size:38 final size:38
Alignment explanation
Indices: 30245771--30245859 Score: 119
Period size: 38 Copynumber: 2.4 Consensus size: 38
30245761 TTTCCCTCTT
* * *
30245771 TCTCTCACCCGTCTTCCCCTCTCTCTCAGCCGCTCTGC
1 TCTCTCACCAGTTTTCCCCTCTCTCTCAGCCGCTCTAC
*
30245809 TCTCTCACCCGTTTTCCCCTCTCTCTCAGCCGCTCTAC
1 TCTCTCACCAGTTTTCCCCTCTCTCTCAGCCGCTCTAC
*
30245847 T-TCT-ACTAGTTTT
1 TCTCTCACCAGTTTT
30245860 TTCATTTTTT
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
36 7 0.15
37 3 0.06
38 37 0.79
ACGTcount: A:0.08, C:0.46, G:0.09, T:0.37
Consensus pattern (38 bp):
TCTCTCACCAGTTTTCCCCTCTCTCTCAGCCGCTCTAC
Found at i:30248151 original size:3 final size:3
Alignment explanation
Indices: 30248143--30248195 Score: 52
Period size: 3 Copynumber: 16.3 Consensus size: 3
30248133 AATTTTAAAA
* *
30248143 ATT ATT ATT ATAT ATTT ATT ATT ATT ATT ATAT ATT TTT ATT AATT TTT
1 ATT ATT ATT AT-T A-TT ATT ATT ATT ATT AT-T ATT ATT ATT -ATT ATT
30248192 ATT A
1 ATT A
30248196 AAAATATAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
3 31 0.74
4 10 0.24
5 1 0.02
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:30248168 original size:10 final size:10
Alignment explanation
Indices: 30248143--30248195 Score: 51
Period size: 10 Copynumber: 5.4 Consensus size: 10
30248133 AATTTTAAAA
30248143 ATTA-TTATT
1 ATTATTTATT
30248152 ATATATTTATT
1 AT-TATTTATT
30248163 ATTA-TTATT
1 ATTATTTATT
30248172 ATATATTT-TT
1 AT-TATTTATT
30248182 ATTAATTT-TT
1 ATT-ATTTATT
30248192 ATTA
1 ATTA
30248196 AAAATATAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
9 11 0.28
10 19 0.49
11 9 0.23
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (10 bp):
ATTATTTATT
Found at i:30248193 original size:20 final size:20
Alignment explanation
Indices: 30248143--30248185 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
30248133 AATTTTAAAA
30248143 ATTATTATTATATATTTATT
1 ATTATTATTATATATTTATT
30248163 ATTATTATTATATATTT-TT
1 ATTATTATTATATATTTATT
30248182 ATTA
1 ATTA
30248186 ATTTTTATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 6 0.26
20 17 0.74
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (20 bp):
ATTATTATTATATATTTATT
Found at i:30251956 original size:13 final size:14
Alignment explanation
Indices: 30251928--30251975 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 14
30251918 GCCACATCAT
30251928 TATCAATTATAATA
1 TATCAATTATAATA
30251942 TATCAATATATTATATCA
1 TATCAAT-TA-TA-AT-A
30251960 TTATCAATTATAATA
1 -TATCAATTATAATA
30251975 T
1 T
30251976 GTTAACATGT
Statistics
Matches: 29, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
14 8 0.28
15 3 0.10
16 4 0.14
17 4 0.14
18 3 0.10
19 7 0.24
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (14 bp):
TATCAATTATAATA
Found at i:30252089 original size:30 final size:29
Alignment explanation
Indices: 30252046--30252115 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 29
30252036 AATTATTAAT
*
30252046 TATAACAGTTTATTGAAT-TCAAAATAAAAG
1 TATAA-AGCTTATT-AATGTCAAAATAAAAG
* *
30252076 TATAAGAGCTTATTAGTGTTAAAATAAAAG
1 TATAA-AGCTTATTAATGTCAAAATAAAAG
30252106 TATAAAGCTT
1 TATAAAGCTT
30252116 GATTTAACAT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 7 0.20
30 28 0.80
ACGTcount: A:0.47, C:0.06, G:0.13, T:0.34
Consensus pattern (29 bp):
TATAAAGCTTATTAATGTCAAAATAAAAG
Found at i:30260777 original size:2 final size:2
Alignment explanation
Indices: 30260770--30260794 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
30260760 GTTCTTGGGA
30260770 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
30260795 GAGAGAGAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:30261505 original size:5 final size:5
Alignment explanation
Indices: 30261495--30261522 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
30261485 AAATTAAAAC
30261495 GCTGT GCTGT GCTGT GCTGT GCTGT GCT
1 GCTGT GCTGT GCTGT GCTGT GCTGT GCT
30261523 TCAATTTCAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.00, C:0.21, G:0.39, T:0.39
Consensus pattern (5 bp):
GCTGT
Found at i:30279666 original size:35 final size:34
Alignment explanation
Indices: 30279622--30279688 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 34
30279612 ATAGTGAAAC
*
30279622 TAATAAAGGATATTACAGAATCATGATAGATATCA
1 TAATAAAGGATAATACA-AATCATGATAGATATCA
* **
30279657 TAATGAAGGATAATGGAAATCATGATAGATAT
1 TAATAAAGGATAATACAAATCATGATAGATAT
30279689 GCTTATTGAC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 15 0.54
35 13 0.46
ACGTcount: A:0.48, C:0.06, G:0.18, T:0.28
Consensus pattern (34 bp):
TAATAAAGGATAATACAAATCATGATAGATATCA
Found at i:30286764 original size:23 final size:23
Alignment explanation
Indices: 30286738--30286811 Score: 80
Period size: 23 Copynumber: 3.3 Consensus size: 23
30286728 TTTTTATTTT
30286738 ATTT-TATCTTTTAAATATTAATA
1 ATTTATAT-TTTTAAATATTAATA
30286761 ATTTATATTTTTAAATATTAATA
1 ATTTATATTTTTAAATATTAATA
* * * *
30286784 GTTGAT-TATTTAACTATTAATA
1 ATTTATATTTTTAAATATTAATA
*
30286806 TTTTAT
1 ATTTAT
30286812 TTGTAATTTA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
22 18 0.41
23 23 0.52
24 3 0.07
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (23 bp):
ATTTATATTTTTAAATATTAATA
Found at i:30286771 original size:22 final size:21
Alignment explanation
Indices: 30286740--30286813 Score: 76
Period size: 22 Copynumber: 3.3 Consensus size: 21
30286730 TTTATTTTAT
30286740 TTTATCTTTTAAATATTAATAA
1 TTTAT-TTTTAAATATTAATAA
*
30286762 TTTATATTTTTAAATATTAATAG
1 -TT-TATTTTTAAATATTAATAA
* * *
30286785 TTGATTATTTAACTATTAATAT
1 TTTATT-TTTAAATATTAATAA
30286807 TTTATTT
1 TTTATTT
30286814 GTAATTTAAT
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
21 4 0.09
22 20 0.45
23 17 0.39
24 3 0.07
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.58
Consensus pattern (21 bp):
TTTATTTTTAAATATTAATAA
Found at i:30286949 original size:27 final size:25
Alignment explanation
Indices: 30286896--30286951 Score: 76
Period size: 27 Copynumber: 2.2 Consensus size: 25
30286886 TTTTTATTTT
*
30286896 ATTTTTTAAATATTAATAATTTATA
1 ATTTTTTAAATATTAATAATTGATA
*
30286921 ATTTGTTTAAAATATTAATAATTGGTA
1 ATTT-TTT-AAATATTAATAATTGATA
30286948 ATTT
1 ATTT
30286952 AATTTATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 4 0.15
26 3 0.11
27 20 0.74
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (25 bp):
ATTTTTTAAATATTAATAATTGATA
Found at i:30286965 original size:27 final size:26
Alignment explanation
Indices: 30286896--30286966 Score: 74
Period size: 27 Copynumber: 2.7 Consensus size: 26
30286886 TTTTTATTTT
*
30286896 ATTT-TTTAAATATTAATAATTTATA
1 ATTTATTTAAATATTAATAATTGATA
* *
30286921 ATTTGTTTAAAATATTAATAATTGGTA
1 ATTTATTT-AAATATTAATAATTGATA
30286948 ATTTAATTTATAAT-TTAAT
1 ATTT-ATTTA-AATATTAAT
30286967 TATTATGGAT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
25 4 0.10
26 3 0.08
27 26 0.67
28 6 0.15
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (26 bp):
ATTTATTTAAATATTAATAATTGATA
Found at i:30287172 original size:16 final size:16
Alignment explanation
Indices: 30287151--30287181 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
30287141 AATTTTTTAT
*
30287151 TTATAATTTAAATATG
1 TTATAATTAAAATATG
30287167 TTATAATTAAAATAT
1 TTATAATTAAAATAT
30287182 AAAAATAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (16 bp):
TTATAATTAAAATATG
Found at i:30287232 original size:21 final size:21
Alignment explanation
Indices: 30287208--30287250 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
30287198 TTTATATTTT
30287208 ATTTAAATAT-TAATTTTATAA
1 ATTTAAATATATAATTTT-TAA
*
30287229 ATTTAAATTTATAATTTTTAA
1 ATTTAAATATATAATTTTTAA
30287250 A
1 A
30287251 AATAAATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
ATTTAAATATATAATTTTTAA
Found at i:30287239 original size:14 final size:15
Alignment explanation
Indices: 30287211--30287321 Score: 50
Period size: 14 Copynumber: 8.2 Consensus size: 15
30287201 ATATTTTATT
*
30287211 TAAATATTAATTTTA
1 TAAATATTAAATTTA
30287226 TAAAT-TTAAATTTA
1 TAAATATTAAATTTA
* * *
30287240 TAATTTTTAAA--AA
1 TAAATATTAAATTTA
* *
30287253 TAAATAATGACATTT-
1 TAAAT-ATTAAATTTA
30287268 T-AATATT---TTTA
1 TAAATATTAAATTTA
*
30287279 T--ATTTTA-ATTTA
1 TAAATATTAAATTTA
*
30287291 -AAATATTAATTTTA
1 TAAATATTAAATTTA
30287305 TAAAT-TTAAATTTA
1 TAAATATTAAATTTA
30287319 TAA
1 TAA
30287322 TTTTTAAAAA
Statistics
Matches: 72, Mismatches: 13, Indels: 23
0.67 0.12 0.21
Matches are distributed among these distances:
10 7 0.10
11 1 0.01
12 4 0.06
13 12 0.17
14 33 0.46
15 15 0.21
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (15 bp):
TAAATATTAAATTTA
Found at i:30287304 original size:79 final size:77
Alignment explanation
Indices: 30287193--30287348 Score: 294
Period size: 79 Copynumber: 2.0 Consensus size: 77
30287183 AAAATAATTC
30287193 ATATTTTTATATTTTATTTAAATATTAATTTTATAAATTTAAATTTATAATTTTTAAAAATAAAT
1 ATATTTTTATATTTTATTTAAATATTAATTTTATAAATTTAAATTTATAATTTTTAAAAATAAAT
30287258 AATGACATTTTA
66 AATGACATTTTA
30287270 ATATTTTTATATTTTAATTTAAAATATTAATTTTATAAATTTAAATTTATAATTTTTAAAAATAA
1 ATATTTTTATATTTT-ATTT-AAATATTAATTTTATAAATTTAAATTTATAATTTTTAAAAATAA
30287335 ATAATGACATTTTA
64 ATAATGACATTTTA
30287349 GTCCAAAATG
Statistics
Matches: 77, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
77 15 0.19
78 4 0.05
79 58 0.75
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.53
Consensus pattern (77 bp):
ATATTTTTATATTTTATTTAAATATTAATTTTATAAATTTAAATTTATAATTTTTAAAAATAAAT
AATGACATTTTA
Found at i:30287329 original size:15 final size:14
Alignment explanation
Indices: 30287266--30287321 Score: 51
Period size: 14 Copynumber: 3.9 Consensus size: 14
30287256 ATAATGACAT
* *
30287266 TTTAATATTTTTATA
1 TTTAA-ATTTATAAA
*
30287281 TTTTAATTTA-AAA
1 TTTAAATTTATAAA
*
30287294 TATTAATTTTATAAA
1 T-TTAAATTTATAAA
30287309 TTTAAATTTATAA
1 TTTAAATTTATAA
30287322 TTTTTAAAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
13 3 0.09
14 22 0.67
15 8 0.24
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
TTTAAATTTATAAA
Found at i:30287329 original size:21 final size:21
Alignment explanation
Indices: 30287285--30287329 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
30287275 TTTATATTTT
30287285 AATTTAAAATATTAATTTTATA
1 AATTT-AAATATTAATTTTATA
*
30287307 AATTTAAATTTATAATTTT-TA
1 AATTTAAATAT-TAATTTTATA
30287328 AA
1 AA
30287330 AATAAATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
AATTTAAATATTAATTTTATA
Found at i:30287906 original size:39 final size:39
Alignment explanation
Indices: 30287852--30287936 Score: 152
Period size: 39 Copynumber: 2.2 Consensus size: 39
30287842 TTTTTATAAA
*
30287852 ATAAAAAAATTTTATACTTAATTTAAGAGTATAGATTTG
1 ATAAATAAATTTTATACTTAATTTAAGAGTATAGATTTG
*
30287891 ATAAATAAATTTTATATTTAATTTAAGAGTATAGATTTG
1 ATAAATAAATTTTATACTTAATTTAAGAGTATAGATTTG
30287930 ATAAATA
1 ATAAATA
30287937 TTAATATTTA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.47, C:0.01, G:0.09, T:0.42
Consensus pattern (39 bp):
ATAAATAAATTTTATACTTAATTTAAGAGTATAGATTTG
Found at i:30287957 original size:20 final size:19
Alignment explanation
Indices: 30287932--30288004 Score: 64
Period size: 20 Copynumber: 3.8 Consensus size: 19
30287922 TAGATTTGAT
30287932 AAATATTAATATTTAATTTA
1 AAATATTAATATTTAA-TTA
*
30287952 AAATATTAA-A---AAGTA
1 AAATATTAATATTTAATTA
*
30287967 AACTATATTACTATTTAACTTA
1 AA--ATATTAATATTTAA-TTA
30287989 AAATATTAATATTTAA
1 AAATATTAATATTTAA
30288005 ATTATTTAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 14
0.70 0.07 0.23
Matches are distributed among these distances:
15 4 0.10
16 2 0.05
17 6 0.14
18 1 0.02
19 1 0.02
20 22 0.52
21 2 0.05
22 4 0.10
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.42
Consensus pattern (19 bp):
AAATATTAATATTTAATTA
Found at i:30288794 original size:25 final size:24
Alignment explanation
Indices: 30288762--30288809 Score: 78
Period size: 25 Copynumber: 2.0 Consensus size: 24
30288752 ATTGGTAATG
*
30288762 TAAAAAATATTTTTCATAAATTTAA
1 TAAAAAATATTTTTAAT-AATTTAA
30288787 TAAAAAATATTTTTAATAATTTA
1 TAAAAAATATTTTTAATAATTTA
30288810 TTTCAATAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 6 0.27
25 16 0.73
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (24 bp):
TAAAAAATATTTTTAATAATTTAA
Found at i:30288881 original size:15 final size:15
Alignment explanation
Indices: 30288835--30288884 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
30288825 ATATTAAATG
*
30288835 TTTT-ATAAAATATT
1 TTTTAATAAATTATT
**
30288849 TTACAATAAATT-TT
1 TTTTAATAAATTATT
30288863 TTTTAATAAATTATT
1 TTTTAATAAATTATT
30288878 TTTTAAT
1 TTTTAAT
30288885 TACCAAACAA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
14 14 0.48
15 15 0.52
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (15 bp):
TTTTAATAAATTATT
Found at i:30289123 original size:17 final size:16
Alignment explanation
Indices: 30289091--30289124 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
30289081 CGCATTTCCC
*
30289091 CACCAAACCCCTTCTT
1 CACCAAACCCCCTCTT
30289107 CACCAAACCCCCCTCTT
1 CACCAAA-CCCCCTCTT
30289124 C
1 C
30289125 GCCTTTCTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.24, C:0.56, G:0.00, T:0.21
Consensus pattern (16 bp):
CACCAAACCCCCTCTT
Found at i:30292090 original size:28 final size:27
Alignment explanation
Indices: 30292058--30292123 Score: 105
Period size: 28 Copynumber: 2.4 Consensus size: 27
30292048 TTAGTTGCTT
*
30292058 TTGTTGTATGATGTAAGCTATTGTTAAA
1 TTGTTGTATGATCTAAGCTATTGTT-AA
30292086 TTGTTGTATGATCTAAGCTATTGTTAA
1 TTGTTGTATGATCTAAGCTATTGTTAA
30292113 TTGTTGGTATG
1 TTGTT-GTATG
30292124 GCTGCAAATG
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 7 0.19
28 29 0.81
ACGTcount: A:0.24, C:0.05, G:0.23, T:0.48
Consensus pattern (27 bp):
TTGTTGTATGATCTAAGCTATTGTTAA
Found at i:30293729 original size:340 final size:343
Alignment explanation
Indices: 30293045--30293730 Score: 961
Period size: 340 Copynumber: 2.0 Consensus size: 343
30293035 ATCTATAATA
*
30293045 TATATAAAAGTAGGATAACTGATTGGGTCAATTGATTGACATTTGTCATTCTCAATTGAATTAAT
1 TATATAAAAGTAAGATAACTGATTGGGTCAATTGATTGACATTTGTCATTCTCAATTGAATTAAT
* * * * * *
30293110 TTTTTTTACACTTTATGTCAAAAATGCGTTGTTTTTTACATTGGAAGGTTTTGTTTTTGTTTTTT
66 TTTTTTTACACTTTATGTCAAAAATACATTGTTTTTGACATTGAAAGGTTCTGTTTTTGCTTTTT
30293175 TACTTTTATTTATTTCAATAAAAAATACTTAAAACAATAATTTCTAACTTTTAATGCTTAGAAGN
131 TACTTTTATTTATTTCAATAAAAAATACTTAAAACAATAATTTCTAACTTTTAATGCTTA-AAG-
* * *
30293240 GAAGATAGATTCATTTAATATTTATCAGTAATAATTTAGTATTATTTTTTATCTATATTTTCTTA
194 GAAGATAGATTCATTTAATATTTATCAATAATAATTTAATATTATTTTTTATCTATATTCTCTTA
* * **
30293305 TTCTGCATGAACCTGAATTTATAGTAAATAGATATCTCTTTTATAGTTAAATGTTTAAATTTCAA
259 TTCTGCATCAACCTGAATCTATAGTAAATAGATATCTCTTTTATACATAAATGTTTAAATTTCAA
* *
30293370 AAAATATCCATCTAATTCAT
324 AAAACATCCATCCAATTCAT
*
30293390 TATATAAAAGTAAGATAATTGATTGGGTCAATTGATTGACATTTGTCATTCTCAATTGAATTAAT
1 TATATAAAAGTAAGATAACTGATTGGGTCAATTGATTGACATTTGTCATTCTCAATTGAATTAAT
* * *
30293455 TTTTTTTACACCTTT-TGTTAAAACTACATTGTTTTTGACATTTAAAGGATTCT-TTTTT-CTTT
66 TTTTTTTACA-CTTTATGTCAAAAATACATTGTTTTTGACATTGAAAGG-TTCTGTTTTTGCTTT
* * * * *
30293517 TTTACTTTTATTTATTTTAGTAAAAAATATTTCTAAACAATAATTTTTAACTTTTAATGC-T-AA
129 TTTACTTTTATTTATTTCAATAAAAAATACTT-AAAACAATAATTTCTAACTTTTAATGCTTAAA
* ** *
30293580 -TAAGATAGATTCATTTAATATTTATCAATTGTAATTTAATATTATTTTTTATTTATATTCTCTT
193 GGAAGATAGATTCATTTAATATTTATCAATAATAATTTAATATTATTTTTTATCTATATTCTCTT
* * * * * *
30293644 ATTCTGCATCAACCTGAATCTATAGTATATAGGTATTTCTTTTGTACATGAATGTTTAAATTTTA
258 ATTCTGCATCAACCTGAATCTATAGTAAATAGATATCTCTTTTATACATAAATGTTTAAATTTCA
*
30293709 ATAAACATCCATCCAATTCAT
323 AAAAACATCCATCCAATTCAT
30293730 T
1 T
30293731 GGACAAAATA
Statistics
Matches: 302, Mismatches: 36, Indels: 11
0.87 0.10 0.03
Matches are distributed among these distances:
340 131 0.43
342 2 0.01
344 33 0.11
345 129 0.43
346 7 0.02
ACGTcount: A:0.33, C:0.10, G:0.09, T:0.47
Consensus pattern (343 bp):
TATATAAAAGTAAGATAACTGATTGGGTCAATTGATTGACATTTGTCATTCTCAATTGAATTAAT
TTTTTTTACACTTTATGTCAAAAATACATTGTTTTTGACATTGAAAGGTTCTGTTTTTGCTTTTT
TACTTTTATTTATTTCAATAAAAAATACTTAAAACAATAATTTCTAACTTTTAATGCTTAAAGGA
AGATAGATTCATTTAATATTTATCAATAATAATTTAATATTATTTTTTATCTATATTCTCTTATT
CTGCATCAACCTGAATCTATAGTAAATAGATATCTCTTTTATACATAAATGTTTAAATTTCAAAA
AACATCCATCCAATTCAT
Found at i:30301765 original size:22 final size:20
Alignment explanation
Indices: 30301735--30301774 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
30301725 GTGTTTTTTT
30301735 TAATAATAAAATTATATAAATG
1 TAATAAT-AAATTA-ATAAATG
*
30301757 TAATTATAAATTAATAAA
1 TAATAATAAATTAATAAA
30301775 GATAAAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 6 0.35
22 6 0.35
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.38
Consensus pattern (20 bp):
TAATAATAAATTAATAAATG
Found at i:30315301 original size:21 final size:21
Alignment explanation
Indices: 30315277--30315318 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
30315267 CGAAAAGAAA
30315277 TATGATAAAAATGAAAATGAT
1 TATGATAAAAATGAAAATGAT
* * *
30315298 TATGCTAAAAATTAAAGTGAT
1 TATGATAAAAATGAAAATGAT
30315319 CGGTTGGCAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.52, C:0.02, G:0.14, T:0.31
Consensus pattern (21 bp):
TATGATAAAAATGAAAATGAT
Found at i:30318318 original size:6 final size:6
Alignment explanation
Indices: 30318307--30318336 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
30318297 GGAGCTGGTT
30318307 GAGGTG GAGGTG GAGGTG GAGGTG GAGGTG
1 GAGGTG GAGGTG GAGGTG GAGGTG GAGGTG
30318337 TCACTTGACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.67, T:0.17
Consensus pattern (6 bp):
GAGGTG
Found at i:30328974 original size:17 final size:17
Alignment explanation
Indices: 30328952--30328984 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
30328942 ATAATAATAA
30328952 AATAA-GAGTTATTATTC
1 AATAAGGAGTT-TTATTC
30328969 AATAAGGAGTTTTATT
1 AATAAGGAGTTTTATT
30328985 TTATCAAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.39, C:0.03, G:0.15, T:0.42
Consensus pattern (17 bp):
AATAAGGAGTTTTATTC
Found at i:30336478 original size:18 final size:18
Alignment explanation
Indices: 30336455--30336497 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
30336445 ACAGCAACTC
30336455 ATTTCTCATACTAGTTCT
1 ATTTCTCATACTAGTTCT
30336473 ATTTCTCATACTAGTTCT
1 ATTTCTCATACTAGTTCT
*
30336491 CTTTCTC
1 ATTTCTC
30336498 TCTCTACCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.19, C:0.26, G:0.05, T:0.51
Consensus pattern (18 bp):
ATTTCTCATACTAGTTCT
Found at i:30341857 original size:6 final size:6
Alignment explanation
Indices: 30341846--30341871 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
30341836 TTTGCTCCAC
30341846 CTAAGG CTAAGG CTAAGG CTAAGG CT
1 CTAAGG CTAAGG CTAAGG CTAAGG CT
30341872 CCATAAATTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.31, C:0.19, G:0.31, T:0.19
Consensus pattern (6 bp):
CTAAGG
Found at i:30350926 original size:41 final size:41
Alignment explanation
Indices: 30350869--30350951 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
30350859 ATTATACATT
30350869 TATTCAATAGATTTCATTTTCTTAAGGCAAATATTTGCTGG
1 TATTCAATAGATTTCATTTTCTTAAGGCAAATATTTGCTGG
30350910 TATTCAATAGATTTCATTTTCTTAAGGCAAATATTTGCTGG
1 TATTCAATAGATTTCATTTTCTTAAGGCAAATATTTGCTGG
30350951 T
1 T
30350952 CTTACGTCAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.29, C:0.12, G:0.14, T:0.45
Consensus pattern (41 bp):
TATTCAATAGATTTCATTTTCTTAAGGCAAATATTTGCTGG
Found at i:30352381 original size:18 final size:18
Alignment explanation
Indices: 30352358--30352397 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
30352348 TCATAACCTC
30352358 TAAAGTCACTAACACTAT
1 TAAAGTCACTAACACTAT
*
30352376 TAAAGTCACTAACACTGT
1 TAAAGTCACTAACACTAT
30352394 TAAA
1 TAAA
30352398 ATACATATTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.45, C:0.20, G:0.07, T:0.28
Consensus pattern (18 bp):
TAAAGTCACTAACACTAT
Found at i:30352970 original size:18 final size:18
Alignment explanation
Indices: 30352947--30353004 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
30352937 TAATAGGCAC
30352947 ATCATCAATATTTACATT
1 ATCATCAATATTTACATT
** * *
30352965 ATCATCAACGTTTCCAAT
1 ATCATCAATATTTACATT
* *
30352983 AGCATCAATATTTACATC
1 ATCATCAATATTTACATT
30353001 ATCA
1 ATCA
30353005 ACATTTAAAG
Statistics
Matches: 29, Mismatches: 11, Indels: 0
0.73 0.28 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.38, C:0.22, G:0.03, T:0.36
Consensus pattern (18 bp):
ATCATCAATATTTACATT
Found at i:30358750 original size:17 final size:18
Alignment explanation
Indices: 30358723--30358769 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 18
30358713 GGAATGGACA
*
30358723 AAAAGAATATTT-TGAAT
1 AAAATAATATTTATGAAT
*
30358740 AAAATATTATTTTATGAAT
1 AAAATAATA-TTTATGAAT
30358759 AAAATAATATT
1 AAAATAATATT
30358770 AAAATAGTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
17 7 0.28
18 5 0.20
19 13 0.52
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.40
Consensus pattern (18 bp):
AAAATAATATTTATGAAT
Found at i:30359716 original size:7 final size:7
Alignment explanation
Indices: 30359704--30359735 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
30359694 CAAAGCTAGC
30359704 AGAAAAG
1 AGAAAAG
30359711 AGAAAAG
1 AGAAAAG
30359718 AGAAAA-
1 AGAAAAG
30359724 A-AAAAG
1 AGAAAAG
30359730 AGAAAA
1 AGAAAA
30359736 TGAGGGGCTG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
5 4 0.17
6 2 0.09
7 17 0.74
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (7 bp):
AGAAAAG
Found at i:30361158 original size:18 final size:19
Alignment explanation
Indices: 30361111--30361157 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
30361101 TTAATATTTT
30361111 AATATTATTTTATTTATAA
1 AATATTATTTTATTTATAA
*
30361130 AATAATATTTTATTT-TAA
1 AATATTATTTTATTTATAA
30361148 AATATT-TTTT
1 AATATTATTTT
30361158 TCATCCGTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 4 0.15
18 8 0.31
19 14 0.54
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (19 bp):
AATATTATTTTATTTATAA
Found at i:30366322 original size:20 final size:21
Alignment explanation
Indices: 30366286--30366325 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
30366276 AAAAACTAAT
*
30366286 AAATAACAATCAAATTAAAAG
1 AAATAACAATAAAATTAAAAG
30366307 AAATAAC-ATAAAATTAAAA
1 AAATAACAATAAAATTAAAA
30366326 TAATTCACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.70, C:0.07, G:0.03, T:0.20
Consensus pattern (21 bp):
AAATAACAATAAAATTAAAAG
Found at i:30373621 original size:20 final size:20
Alignment explanation
Indices: 30373596--30373640 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
30373586 CAAATAACAT
*
30373596 TTGTTACAAAATGTATAAAA
1 TTGTTACAAAATGTAAAAAA
*
30373616 TTGTTACTAAATGTAAAAAA
1 TTGTTACAAAATGTAAAAAA
30373636 TTGTT
1 TTGTT
30373641 TGAAAAACAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.44, C:0.04, G:0.11, T:0.40
Consensus pattern (20 bp):
TTGTTACAAAATGTAAAAAA
Found at i:30378072 original size:18 final size:18
Alignment explanation
Indices: 30378032--30378073 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
30378022 GACCGAAGCC
*
30378032 AAAAGAGAGAAAAAGAAG
1 AAAAGAAAGAAAAAGAAG
*
30378050 TAAAGAAAGAAAGAAGAA-
1 AAAAGAAAGAAA-AAGAAG
30378068 AAAAGA
1 AAAAGA
30378074 GACAAACGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.74, C:0.00, G:0.24, T:0.02
Consensus pattern (18 bp):
AAAAGAAAGAAAAAGAAG
Found at i:30386539 original size:26 final size:26
Alignment explanation
Indices: 30386510--30386565 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
30386500 AAAATGTATG
30386510 AAATTTTCTATATATTATA-TTT-AATT
1 AAATTTT-TATAT-TTATATTTTAAATT
*
30386536 AAATTTTTATATTTTTATTTTAAATT
1 AAATTTTTATATTTATATTTTAAATT
30386562 AAAT
1 AAAT
30386566 AATTTTTTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 4 0.15
25 8 0.30
26 15 0.56
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (26 bp):
AAATTTTTATATTTATATTTTAAATT
Found at i:30395255 original size:21 final size:22
Alignment explanation
Indices: 30395230--30395270 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
30395220 CCTAGGTGGA
*
30395230 AAAATTCAAGGGAA-AAGTGTG
1 AAAATTCAAGGAAACAAGTGTG
30395251 AAAATTCAAGGAAACAAGTG
1 AAAATTCAAGGAAACAAGTG
30395271 AAAAAAAGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.51, C:0.07, G:0.24, T:0.17
Consensus pattern (22 bp):
AAAATTCAAGGAAACAAGTGTG
Found at i:30395271 original size:20 final size:21
Alignment explanation
Indices: 30395230--30395274 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
30395220 CCTAGGTGGA
*
30395230 AAAATTCAAGGGAAAAGTGTG
1 AAAATTCAAGGGAAAAGAGTG
30395251 AAAATTCAA-GGAAACA-AGTG
1 AAAATTCAAGGGAAA-AGAGTG
30395271 AAAA
1 AAAA
30395275 AAAGGTAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.56, C:0.07, G:0.22, T:0.16
Consensus pattern (21 bp):
AAAATTCAAGGGAAAAGAGTG
Found at i:30395275 original size:21 final size:20
Alignment explanation
Indices: 30395228--30395275 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 20
30395218 ACCCTAGGTG
*
30395228 GAAAAATTCAAGGGAAAAGT
1 GAAAAATTCAAGGAAAAAGT
*
30395248 GTGAAAATTCAAGGAAACAAGT
1 G-AAAAATTCAAGGAAA-AAGT
30395270 GAAAAA
1 GAAAAA
30395276 AAGGTAAGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 17 0.74
22 5 0.22
ACGTcount: A:0.56, C:0.06, G:0.23, T:0.15
Consensus pattern (20 bp):
GAAAAATTCAAGGAAAAAGT
Found at i:30398049 original size:19 final size:19
Alignment explanation
Indices: 30398025--30398103 Score: 131
Period size: 19 Copynumber: 4.2 Consensus size: 19
30398015 CAAATGAGTA
30398025 AGTACTATAATACTCAGTG
1 AGTACTATAATACTCAGTG
*
30398044 AGTACTATAATACTTAGTG
1 AGTACTATAATACTCAGTG
*
30398063 ATTACTATAATACTCAGTG
1 AGTACTATAATACTCAGTG
*
30398082 ATTACTATAATACTCAGTG
1 AGTACTATAATACTCAGTG
30398101 AGT
1 AGT
30398104 GGTGCAGATA
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 56 1.00
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35
Consensus pattern (19 bp):
AGTACTATAATACTCAGTG
Found at i:30407318 original size:36 final size:36
Alignment explanation
Indices: 30407233--30407385 Score: 159
Period size: 36 Copynumber: 4.3 Consensus size: 36
30407223 TGATTTATAC
* *
30407233 AAGGCATTGTGTTGAAAAGTTGTGCTTGATCCAT-A
1 AAGGCATTGTGTTGAGAGGTTGTGCTTGATCCATGA
* *
30407268 AAAGCATTATGTTGAGAGGTTGTGCTTGAT-CATTGA
1 AAGGCATTGTGTTGAGAGGTTGTGCTTGATCCA-TGA
* *
30407304 AAGGCATTGTGTTGATAGGTTGTGCTTGATCCATAA
1 AAGGCATTGTGTTGAGAGGTTGTGCTTGATCCATGA
* * * * *
30407340 AAGGCATTATATAGAGAGGATGTGCATGAT-CATTGA
1 AAGGCATTGTGTTGAGAGGTTGTGCTTGATCCA-TGA
*
30407376 AAGACATTGT
1 AAGGCATTGT
30407386 AAAGGTTATG
Statistics
Matches: 97, Mismatches: 17, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
34 2 0.02
35 29 0.30
36 64 0.66
37 2 0.02
ACGTcount: A:0.30, C:0.10, G:0.27, T:0.33
Consensus pattern (36 bp):
AAGGCATTGTGTTGAGAGGTTGTGCTTGATCCATGA
Found at i:30407384 original size:72 final size:71
Alignment explanation
Indices: 30407237--30407385 Score: 226
Period size: 72 Copynumber: 2.1 Consensus size: 71
30407227 TTATACAAGG
* * * *
30407237 CATTGTGTTGAAAAGTTGTGCTTGATCCATAAAAGCATTATGTTGAGAGGTTGTGCTTGATCATT
1 CATTGTGTTGAAAAGTTGTGCTTGATCCATAAAAGCATTATATAGAGAGGATGTGCATGATCATT
*
30407302 GAAAGG
66 GAAAGA
* *
30407308 CATTGTGTTGATAGGTTGTGCTTGATCCATAAAAGGCATTATATAGAGAGGATGTGCATGATCAT
1 CATTGTGTTGAAAAGTTGTGCTTGATCCATAAAA-GCATTATATAGAGAGGATGTGCATGATCAT
30407373 TGAAAGA
65 TGAAAGA
30407380 CATTGT
1 CATTGT
30407386 AAAGGTTATG
Statistics
Matches: 70, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
71 32 0.46
72 38 0.54
ACGTcount: A:0.30, C:0.10, G:0.26, T:0.34
Consensus pattern (71 bp):
CATTGTGTTGAAAAGTTGTGCTTGATCCATAAAAGCATTATATAGAGAGGATGTGCATGATCATT
GAAAGA
Found at i:30415966 original size:20 final size:19
Alignment explanation
Indices: 30415932--30415969 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
30415922 ACTAAAAATA
*
30415932 TTAATTAAAATAATATATT
1 TTAATTAAAACAATATATT
30415951 TTAATGTAAAACAATATAT
1 TTAAT-TAAAACAATATAT
30415970 ATATATATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.42
Consensus pattern (19 bp):
TTAATTAAAACAATATATT
Found at i:30421314 original size:21 final size:22
Alignment explanation
Indices: 30421276--30421317 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
30421266 ATTTTCAGAA
30421276 TTTTTAAAAAAAATTATTTTCC
1 TTTTTAAAAAAAATTATTTTCC
* *
30421298 TTTTTGAACAAAA-TATTTTC
1 TTTTTAAAAAAAATTATTTTC
30421318 TTTAATTCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.38, C:0.10, G:0.02, T:0.50
Consensus pattern (22 bp):
TTTTTAAAAAAAATTATTTTCC
Found at i:30425880 original size:35 final size:35
Alignment explanation
Indices: 30425798--30425870 Score: 103
Period size: 36 Copynumber: 2.1 Consensus size: 35
30425788 TAAGTTGTTG
* *
30425798 TTTGA-ATATTTGTTTTTAGTTATTTAATTTTATA
1 TTTGAGATATTTGTTTTTAGTTATTTAAATTTAAA
*
30425832 TTTGAGATATTTGTTTTTTGATTATTTAAATTTAAA
1 TTTGAGATATTTGTTTTTAG-TTATTTAAATTTAAA
30425868 TTT
1 TTT
30425871 TATTGTTTGT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
34 5 0.15
35 13 0.38
36 16 0.47
ACGTcount: A:0.27, C:0.00, G:0.10, T:0.63
Consensus pattern (35 bp):
TTTGAGATATTTGTTTTTAGTTATTTAAATTTAAA
Found at i:30436772 original size:16 final size:16
Alignment explanation
Indices: 30436747--30436777 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
30436737 ATTATATATT
*
30436747 TTTTATTTTTTATTAG
1 TTTTACTTTTTATTAG
30436763 TTTTACTTTTTATTA
1 TTTTACTTTTTATTA
30436778 ATAAAAAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.03, G:0.03, T:0.74
Consensus pattern (16 bp):
TTTTACTTTTTATTAG
Found at i:30441263 original size:22 final size:23
Alignment explanation
Indices: 30441165--30441337 Score: 205
Period size: 22 Copynumber: 7.7 Consensus size: 23
30441155 AACACATTGG
* *
30441165 GAACATGACGTGTAACAATTTTT
1 GAACATGGCGTGTAACATTTTTT
* *
30441188 GAAC-TTGTGTGTAACA-TTTTT
1 GAACATGGCGTGTAACATTTTTT
*
30441209 GAACATGGTGTGTAACATTTTTT
1 GAACATGGCGTGTAACATTTTTT
*
30441232 GAAC-TTGCGTGTAACA-TTTTT
1 GAACATGGCGTGTAACATTTTTT
30441253 GAACATGGCGTG-AAGCATTTTTT
1 GAACATGGCGTGTAA-CATTTTTT
* *
30441276 CAACAT-ACGTGTAACATTTTTT
1 GAACATGGCGTGTAACATTTTTT
*
30441298 AAACATGGCGTGTAACATTTTTT
1 GAACATGGCGTGTAACATTTTTT
*
30441321 GAAAATGGCGTGTAACA
1 GAACATGGCGTGTAACA
30441338 ACATGAGTGA
Statistics
Matches: 130, Mismatches: 13, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
21 20 0.15
22 55 0.42
23 55 0.42
ACGTcount: A:0.29, C:0.13, G:0.20, T:0.38
Consensus pattern (23 bp):
GAACATGGCGTGTAACATTTTTT
Found at i:30441273 original size:21 final size:22
Alignment explanation
Indices: 30441165--30441337 Score: 183
Period size: 23 Copynumber: 7.8 Consensus size: 22
30441155 AACACATTGG
*
30441165 GAACATGACGTGTAACAATTTTT
1 GAACATGGCGTGTAAC-ATTTTT
* *
30441188 GAAC-TTGTGTGTAACATTTTT
1 GAACATGGCGTGTAACATTTTT
*
30441209 GAACATGGTGTGTAACATTTTTT
1 GAACATGGCGTGTAACA-TTTTT
*
30441232 GAAC-TTGCGTGTAACATTTTT
1 GAACATGGCGTGTAACATTTTT
30441253 GAACATGGCGTG-AAGCATTTTTT
1 GAACATGGCGTGTAA-CA-TTTTT
* *
30441276 CAACAT-ACGTGTAACATTTTTT
1 GAACATGGCGTGTAACA-TTTTT
*
30441298 AAACATGGCGTGTAACATTTTTT
1 GAACATGGCGTGTAACA-TTTTT
*
30441321 GAAAATGGCGTGTAACA
1 GAACATGGCGTGTAACA
30441338 ACATGAGTGA
Statistics
Matches: 130, Mismatches: 13, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
21 21 0.16
22 54 0.42
23 55 0.42
ACGTcount: A:0.29, C:0.13, G:0.20, T:0.38
Consensus pattern (22 bp):
GAACATGGCGTGTAACATTTTT
Found at i:30446401 original size:21 final size:21
Alignment explanation
Indices: 30446377--30446422 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
30446367 ATGAAGTTGG
*
30446377 AGATGAAGAATGTTTAAATGA
1 AGATGAAGAAGGTTTAAATGA
30446398 AGATGAAGAAGGTTTAAATGA
1 AGATGAAGAAGGTTTAAATGA
30446419 AGAT
1 AGAT
30446423 TATTTTAAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.48, C:0.00, G:0.26, T:0.26
Consensus pattern (21 bp):
AGATGAAGAAGGTTTAAATGA
Found at i:30446682 original size:21 final size:21
Alignment explanation
Indices: 30446637--30446683 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
30446627 GAAGCTACTG
* * *
30446637 GAGGCCCATTTAAAGTTGTTG
1 GAGGCCCATTTAAAGGTGCTA
*
30446658 GAGGCCCATTTGAAGGTGCTA
1 GAGGCCCATTTAAAGGTGCTA
30446679 GAGGC
1 GAGGC
30446684 TAATTCAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.17, G:0.34, T:0.26
Consensus pattern (21 bp):
GAGGCCCATTTAAAGGTGCTA
Found at i:30447544 original size:22 final size:22
Alignment explanation
Indices: 30447516--30447561 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
30447506 GCATTGAAGA
30447516 ATAATTTTTTAAAAGGTTGCAT
1 ATAATTTTTTAAAAGGTTGCAT
30447538 ATAATTTTTTAAAAGGTTGCAT
1 ATAATTTTTTAAAAGGTTGCAT
30447560 AT
1 AT
30447562 GTATATTTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.37, C:0.04, G:0.13, T:0.46
Consensus pattern (22 bp):
ATAATTTTTTAAAAGGTTGCAT
Found at i:30449184 original size:24 final size:24
Alignment explanation
Indices: 30449157--30449221 Score: 76
Period size: 24 Copynumber: 2.7 Consensus size: 24
30449147 GCTAATAGAG
30449157 CAAGTGAAGTTGTTGCTGCTGCAC
1 CAAGTGAAGTTGTTGCTGCTGCAC
** * * *
30449181 CAAGTGAAACTGCTACTGGTGCAC
1 CAAGTGAAGTTGTTGCTGCTGCAC
*
30449205 TAAGTGAAGTTGTTGCT
1 CAAGTGAAGTTGTTGCT
30449222 AGTGCAAGTG
Statistics
Matches: 31, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (24 bp):
CAAGTGAAGTTGTTGCTGCTGCAC
Found at i:30449965 original size:31 final size:31
Alignment explanation
Indices: 30449920--30450397 Score: 506
Period size: 31 Copynumber: 15.4 Consensus size: 31
30449910 TCTCTTTTTT
30449920 CGTGACACGCTGAGTGGTAGCAGATTTATGG
1 CGTGACACGCTGAGTGGTAGCAGATTTATGG
* * * * * *
30449951 GGCGACACGTTGAGTGGAAGCAAATTTATGA
1 CGTGACACGCTGAGTGGTAGCAGATTTATGG
** * * * * *
30449982 CGTGACACATTGACTTGTTGCATATTGATGG
1 CGTGACACGCTGAGTGGTAGCAGATTTATGG
* * *
30450013 CGTGACACGTTGAGTGATAGCAGATTCATGG
1 CGTGACACGCTGAGTGGTAGCAGATTTATGG
* * *
30450044 GGTGACACGCTGAGTGGAAGCAGATTGATGG
1 CGTGACACGCTGAGTGGTAGCAGATTTATGG
* *
30450075 CGTGACACGCTGAGTGATAGCAGATTGATGG
1 CGTGACACGCTGAGTGGTAGCAGATTTATGG
* *
30450106 CATGACACGCTGAGTGTTAGCAGATTTATGG
1 CGTGACACGCTGAGTGGTAGCAGATTTATGG
* * *
30450137 GGTGACACGCTAAGTGGTAGCAGATTGATGG
1 CGTGACACGCTGAGTGGTAGCAGATTTATGG
* *
30450168 CGTGACACGTTAAGTGGTAGCAGATTTATGG
1 CGTGACACGCTGAGTGGTAGCAGATTTATGG
* * **
30450199 GGTGACACACTGAGTGGTAATAGATTTATGG
1 CGTGACACGCTGAGTGGTAGCAGATTTATGG
* ** *
30450230 CGTCACACATTGAGTGGTAGCAGATTGATGG
1 CGTGACACGCTGAGTGGTAGCAGATTTATGG
* *
30450261 CGTGACACGCTAAGTGGTAACAGATTTATGG
1 CGTGACACGCTGAGTGGTAGCAGATTTATGG
* * * * * *
30450292 GGTGACATGCTAAGTGATAGCAAATTAATGG
1 CGTGACACGCTGAGTGGTAGCAGATTTATGG
* * *
30450323 CATGACACACTGAGTGGTAGTAGATTTATGG
1 CGTGACACGCTGAGTGGTAGCAGATTTATGG
*
30450354 GGTGACACGCTGAGTGGTAGCAGATTTATGG
1 CGTGACACGCTGAGTGGTAGCAGATTTATGG
* *
30450385 CATGACATGCTGA
1 CGTGACACGCTGA
30450398 CTTGTTGCAG
Statistics
Matches: 365, Mismatches: 82, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 365 1.00
ACGTcount: A:0.27, C:0.14, G:0.33, T:0.26
Consensus pattern (31 bp):
CGTGACACGCTGAGTGGTAGCAGATTTATGG
Found at i:30451874 original size:81 final size:81
Alignment explanation
Indices: 30451733--30451916 Score: 242
Period size: 81 Copynumber: 2.3 Consensus size: 81
30451723 GAATGCTTTA
* * * *
30451733 AGGAAAATGGTCCCCTTCAGCCTGAAGTAATGCAAGGTTCCCATCCTCTCTTGCTGCTGCCCCGA
1 AGGAAGATGGTCCCCTTCAGCCTGAAGTAATGCAAGGTTCCCATCCTCTCCTACTACTGCCCCGA
* * *
30451798 CTACTGCATTGGCCTG
66 CTAATGCATTAGCATG
* * * * * *
30451814 AGGAAGATGGTCCTCTTCATCCTGAAGTGATGCCAGGTTCCTATCCTCTCCTACTACTGCCTCGA
1 AGGAAGATGGTCCCCTTCAGCCTGAAGTAATGCAAGGTTCCCATCCTCTCCTACTACTGCCCCGA
30451879 CTAATGCATTAGCATG
66 CTAATGCATTAGCATG
*
30451895 AGGAAGATGGTCTCCTTCAGCC
1 AGGAAGATGGTCCCCTTCAGCC
30451917 ATGACTGAGT
Statistics
Matches: 87, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 87 1.00
ACGTcount: A:0.21, C:0.30, G:0.22, T:0.27
Consensus pattern (81 bp):
AGGAAGATGGTCCCCTTCAGCCTGAAGTAATGCAAGGTTCCCATCCTCTCCTACTACTGCCCCGA
CTAATGCATTAGCATG
Found at i:30454324 original size:31 final size:31
Alignment explanation
Indices: 30454285--30454452 Score: 196
Period size: 31 Copynumber: 5.5 Consensus size: 31
30454275 AGAAAGAAAT
* *
30454285 AAAT-TTGTTACTCACCATGCATTTCAAGTA
1 AAATGTTGTTACACACCATGCATATCAAGTA
*
30454315 AAATGTTGTTACACACCATGCATATCAAGAA
1 AAATGTTGTTACACACCATGCATATCAAGTA
* * * * * * *
30454346 AAATGTTGTTAAACGCTACGCATATAAACTT
1 AAATGTTGTTACACACCATGCATATCAAGTA
*
30454377 AAATGTTGTTACACACCATGCATATCAAGTC
1 AAATGTTGTTACACACCATGCATATCAAGTA
**
30454408 AAATGTTGTTACACGTCATGCATATCAAGTCA
1 AAATGTTGTTACACACCATGCATATCAAGT-A
30454440 AAA-GTTGTTACAC
1 AAATGTTGTTACAC
30454453 GCCAACGCTG
Statistics
Matches: 115, Mismatches: 21, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
30 4 0.03
31 108 0.94
32 3 0.03
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.31
Consensus pattern (31 bp):
AAATGTTGTTACACACCATGCATATCAAGTA
Found at i:30454397 original size:93 final size:92
Alignment explanation
Indices: 30454284--30454454 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 92
30454274 AAGAAAGAAA
* *
30454284 TAAATTTGTTACTCACCATGCATTTCAAGTAAAATGTTGTTACACACCATGCATATCAAG-AAAA
1 TAAATTTGTTACACACCATGCATATCAAGTAAAATGTTGTTACACACCATGCATATCAAGTAAAA
30454348 ATGTTGTTAAACGCTACGCATATAAACT
66 A-GTTGTTAAACGCTACGCATATAAACT
* ** *
30454376 TAAATGTTGTTACACACCATGCATATCAAGTCAAATGTTGTTACACGTCATGCATATCAAGTCAA
1 TAAAT-TTGTTACACACCATGCATATCAAGTAAAATGTTGTTACACACCATGCATATCAAGTAAA
*
30454441 AAGTTGTTACACGC
65 AAGTTGTTAAACGC
30454455 CAACGCTGAG
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
92 5 0.07
93 61 0.87
94 4 0.06
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.31
Consensus pattern (92 bp):
TAAATTTGTTACACACCATGCATATCAAGTAAAATGTTGTTACACACCATGCATATCAAGTAAAA
AGTTGTTAAACGCTACGCATATAAACT
Found at i:30454643 original size:87 final size:87
Alignment explanation
Indices: 30454468--30454653 Score: 212
Period size: 87 Copynumber: 2.1 Consensus size: 87
30454458 CGCTGAGCAG
* * * * * *
30454468 TGTCGTGACACGCCAACCATGGCATGTCTTGACACCCCAATCACTATAATTACTGTCTCCTTACA
1 TGTCGGGACACGCCAACCATGGCATATCATGACACACAAATCACTATAATTACTGACTCCTTACA
**
30454533 CAAACTAGCCTAAAATATGCAA
66 CAAACTAGCCTAAAATAACCAA
* * * * *
30454555 TGTGGGGACACGCCAACCATGGCGTATCATGACACACAAATCACTGTAATTATTGACTCGTTACA
1 TGTCGGGACACGCCAACCATGGCATATCATGACACACAAATCACTATAATTACTGACTCCTTACA
**
30454620 TGAACTA-CCTTAAAATAACCAA
66 CAAACTAGCC-TAAAATAACCAA
*
30454642 TGTCGTGACACG
1 TGTCGGGACACG
30454654 TTAAAAACCC
Statistics
Matches: 81, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
86 2 0.02
87 79 0.98
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.25
Consensus pattern (87 bp):
TGTCGGGACACGCCAACCATGGCATATCATGACACACAAATCACTATAATTACTGACTCCTTACA
CAAACTAGCCTAAAATAACCAA
Found at i:30455150 original size:23 final size:23
Alignment explanation
Indices: 30455117--30455200 Score: 69
Period size: 23 Copynumber: 3.7 Consensus size: 23
30455107 CTATTTCAGA
* *
30455117 CCATGGCGTGTGACATATTCAAC
1 CCATGCCGTGTCACATATTCAAC
* * * *
30455140 CCATGCGGTGTCATATGTTCAAG
1 CCATGCCGTGTCACATATTCAAC
* * *
30455163 CCATGCCGTGTCATATGTTCAAG
1 CCATGCCGTGTCACATATTCAAC
* *
30455186 CCATGTCATGTCACA
1 CCATGCCGTGTCACA
30455201 CGTTCTCACC
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (23 bp):
CCATGCCGTGTCACATATTCAAC
Done.