Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41236440
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2030548 characters in sequence are not A, C, G, or T
File 88 of 106
Found at i:33537881 original size:23 final size:23
Alignment explanation
Indices: 33537855--33537914 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 23
33537845 CCTTTATTAT
33537855 AATAAAATTTATTTTCATAAAAA
1 AATAAAATTTATTTTCATAAAAA
* *
33537878 AAT-AAATTATATTTTCATTAAAC
1 AATAAAATT-TATTTTCATAAAAA
*
33537901 ATTAATAATTTATT
1 AATAA-AATTTATT
33537915 ATTAAATTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
22 5 0.16
23 17 0.55
24 5 0.16
25 4 0.13
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (23 bp):
AATAAAATTTATTTTCATAAAAA
Found at i:33537960 original size:21 final size:20
Alignment explanation
Indices: 33537907--33537964 Score: 64
Period size: 21 Copynumber: 2.9 Consensus size: 20
33537897 AAACATTAAT
33537907 AATTTATTATTAAATTATTA
1 AATTTATTATTAAATTATTA
** *
33537927 ATATAAATT-TTAAATATTTTA
1 A-ATTTATTATTAAAT-TATTA
33537948 AATTTATTATTAAATTA
1 AATTTATTATTAAATTA
33537965 GTTATATGAT
Statistics
Matches: 29, Mismatches: 6, Indels: 6
0.71 0.15 0.15
Matches are distributed among these distances:
20 13 0.45
21 16 0.55
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
AATTTATTATTAAATTATTA
Found at i:33538102 original size:125 final size:126
Alignment explanation
Indices: 33537948--33538201 Score: 393
Period size: 125 Copynumber: 2.0 Consensus size: 126
33537938 AAATATTTTA
* * * *
33537948 AATTTATTATTAAATTAGTTATATGATTTTTAATTTTAATTATTTGAATAATTTTTCTCTATTTG
1 AATTTATTATTAAATTAGTTATATAATTTTTAATTTCAATTATTTGAATAATTTTTCGCCATTTG
* *
33538013 TATTTTTCATTTCTTAATCTTTTAATTTCTATTTTCATTAAACATTAATAATTTATTAAAT
66 TATATTTCATTTCTTAATCTTTTAATTTCTATTTTCATTAAACATCAATAATTTATTAAAT
*
33538074 AATTTA-TATTAAATTAGTTATATAATTTTTTATTTCAATTATTTGAATAATTTTTCGCCATTTG
1 AATTTATTATTAAATTAGTTATATAATTTTTAATTTCAATTATTTGAATAATTTTTCGCCATTTG
* * * * *
33538138 TATATTTCATTTTTTAATCTTTTAATTTTTGTTTTTATTAAACATCAATAATTTATTAATT
66 TATATTTCATTTCTTAATCTTTTAATTTCTATTTTCATTAAACATCAATAATTTATTAAAT
33538199 AAT
1 AAT
33538202 ATAAATTTTA
Statistics
Matches: 116, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
125 110 0.95
126 6 0.05
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (126 bp):
AATTTATTATTAAATTAGTTATATAATTTTTAATTTCAATTATTTGAATAATTTTTCGCCATTTG
TATATTTCATTTCTTAATCTTTTAATTTCTATTTTCATTAAACATCAATAATTTATTAAAT
Found at i:33540951 original size:17 final size:16
Alignment explanation
Indices: 33540929--33540962 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
33540919 CAACGAGAAG
33540929 AAAGAAAAGAAAATAAA
1 AAAGAAAA-AAAATAAA
*
33540946 AAAGAAAAAAATTAAA
1 AAAGAAAAAAAATAAA
33540962 A
1 A
33540963 TGAATTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.82, C:0.00, G:0.09, T:0.09
Consensus pattern (16 bp):
AAAGAAAAAAAATAAA
Found at i:33541511 original size:23 final size:23
Alignment explanation
Indices: 33541485--33541537 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
33541475 GTTTTGCTTC
*
33541485 TTCTCTTTCTTAAGTATTTAATT
1 TTCTATTTCTTAAGTATTTAATT
* *
33541508 TTCTATTTTTTAAGTGTTTAATT
1 TTCTATTTCTTAAGTATTTAATT
33541531 TTC-ATTT
1 TTCTATTT
33541538 TCCAATTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 4 0.15
23 23 0.85
ACGTcount: A:0.21, C:0.09, G:0.06, T:0.64
Consensus pattern (23 bp):
TTCTATTTCTTAAGTATTTAATT
Found at i:33547062 original size:52 final size:51
Alignment explanation
Indices: 33546905--33547070 Score: 187
Period size: 49 Copynumber: 3.3 Consensus size: 51
33546895 AAGGGTCTTG
** *
33546905 TGAACAATTTGGAGGTTTCGCTTTAAGGGTCTTGAGACTTGATCTTG--AA
1 TGAACAATTTGGAGACTTCGCTTTAAGGGTCTTGATACTTGATCTTGAAAA
* * * *
33546954 TGAATAATTTGGAGACTTTG-TTTCGAGGGACTTG-TGACTTGATCTTGAAAA
1 TGAACAATTTGGAGACTTCGCTTT-AAGGGTCTTGAT-ACTTGATCTTGAAAA
* *
33547005 TGAACAATTTGGAGACTTCGCTTTAAAGGTTTTGACTACTTGATCTTGAAAA
1 TGAACAATTTGGAGACTTCGCTTTAAGGGTCTTGA-TACTTGATCTTGAAAA
*
33547057 CGAACAATTTGGAG
1 TGAACAATTTGGAG
33547071 GTTAGGACTT
Statistics
Matches: 96, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
48 3 0.03
49 35 0.36
51 26 0.27
52 31 0.32
53 1 0.01
ACGTcount: A:0.28, C:0.12, G:0.24, T:0.36
Consensus pattern (51 bp):
TGAACAATTTGGAGACTTCGCTTTAAGGGTCTTGATACTTGATCTTGAAAA
Found at i:33547220 original size:28 final size:28
Alignment explanation
Indices: 33547146--33547222 Score: 109
Period size: 29 Copynumber: 2.7 Consensus size: 28
33547136 TTGAACTTTA
* * *
33547146 GAGGCTTTAATCTTCATAATTTTCCTTC
1 GAGGCTTTGATCTTCAGAATCTTCCTTC
33547174 GAGGCTTTTGATCTTCAGAATCTTCCTTC
1 GAGGC-TTTGATCTTCAGAATCTTCCTTC
*
33547203 GAGGCTTTGATGTTCAGAAT
1 GAGGCTTTGATCTTCAGAAT
33547223 TTTCTTTCAA
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
28 19 0.43
29 25 0.57
ACGTcount: A:0.21, C:0.19, G:0.18, T:0.42
Consensus pattern (28 bp):
GAGGCTTTGATCTTCAGAATCTTCCTTC
Found at i:33547239 original size:28 final size:28
Alignment explanation
Indices: 33547155--33547239 Score: 80
Period size: 28 Copynumber: 3.0 Consensus size: 28
33547145 AGAGGCTTTA
* * * *
33547155 ATCTTCATAATTTTCCTTCGAGGCTTTTG
1 ATCTTCAGAATCTTCCTTCAAGG-ATTTG
* *
33547184 ATCTTCAGAATCTTCCTTCGAGGCTTTG
1 ATCTTCAGAATCTTCCTTCAAGGATTTG
* * *
33547212 ATGTTCAGAATTTTCTTTCAAGGATTTG
1 ATCTTCAGAATCTTCCTTCAAGGATTTG
33547240 GTTGAACTCT
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
28 27 0.56
29 21 0.44
ACGTcount: A:0.20, C:0.19, G:0.16, T:0.45
Consensus pattern (28 bp):
ATCTTCAGAATCTTCCTTCAAGGATTTG
Found at i:33547394 original size:48 final size:48
Alignment explanation
Indices: 33547336--33547490 Score: 181
Period size: 48 Copynumber: 3.3 Consensus size: 48
33547326 AATTGAAAAT
* * *
33547336 CTAGAAAGGCTTTGTTCTTCAGATCTTCCATCTTGGATATGTGGAACA
1 CTAGAGAGGCTTTGATCTTCAGATCTTCCTTCTTGGATATGTGGAACA
* * * * *
33547384 CTAGAGAGGCTTTGATCTTTAGATTTTCCTTCATAGATATGTGGAACT
1 CTAGAGAGGCTTTGATCTTCAGATCTTCCTTCTTGGATATGTGGAACA
* * * *
33547432 CTAGAGA--CTTTGGTCTTCATATCTTCCTTCTTGAATTTGTGGAACA
1 CTAGAGAGGCTTTGATCTTCAGATCTTCCTTCTTGGATATGTGGAACA
33547478 -TAGAGAGGCTTTG
1 CTAGAGAGGCTTTG
33547491 GATATTCAAA
Statistics
Matches: 88, Mismatches: 17, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
45 6 0.07
46 30 0.34
47 5 0.06
48 47 0.53
ACGTcount: A:0.24, C:0.17, G:0.21, T:0.38
Consensus pattern (48 bp):
CTAGAGAGGCTTTGATCTTCAGATCTTCCTTCTTGGATATGTGGAACA
Found at i:33551354 original size:79 final size:79
Alignment explanation
Indices: 33551251--33551425 Score: 192
Period size: 79 Copynumber: 2.2 Consensus size: 79
33551241 AAATAGTATT
* * * * * * *
33551251 TTATCTCTAGATTATTTTGATTTATTTAGAGATAAATT-GAGTTACCAATAAAGAAATTTTAATT
1 TTATCTCTAAATTATCTTAATTTATTTAAAGATAAATTAGA-TGACCAAAAAAGAAATCTTAATT
33551315 GGTCAAATTTAA-AAA
65 GGTCAAA-TTAAGAAA
* * * *
33551330 TTATGTCTAAATTATCTTAATTTATTTAAAGATAACTTAGATGATCAAAAAATAAATCTTAATTG
1 TTATCTCTAAATTATCTTAATTTATTTAAAGATAAATTAGATGACCAAAAAAGAAATCTTAATTG
** *
33551395 GTTTAATTAAGATA
66 GTCAAATTAAGAAA
33551409 TTATCTCTAAATTATCT
1 TTATCTCTAAATTATCT
33551426 CAAAAATTAA
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
78 4 0.05
79 73 0.92
80 2 0.03
ACGTcount: A:0.41, C:0.07, G:0.09, T:0.43
Consensus pattern (79 bp):
TTATCTCTAAATTATCTTAATTTATTTAAAGATAAATTAGATGACCAAAAAAGAAATCTTAATTG
GTCAAATTAAGAAA
Found at i:33552672 original size:18 final size:18
Alignment explanation
Indices: 33552651--33552690 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
33552641 TTCGAAACTC
* **
33552651 TTTTTTTCAAAATTTTAT
1 TTTTTTTAAAAAAATTAT
33552669 TTTTTTTAAAAAAATTAT
1 TTTTTTTAAAAAAATTAT
33552687 TTTT
1 TTTT
33552691 AAAAATTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (18 bp):
TTTTTTTAAAAAAATTAT
Found at i:33554113 original size:20 final size:20
Alignment explanation
Indices: 33554088--33554129 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
33554078 AAAAGTAGCC
33554088 AATTATAGGTGGTAATGGTT
1 AATTATAGGTGGTAATGGTT
33554108 AATTATAGGTGGTAATGGTT
1 AATTATAGGTGGTAATGGTT
33554128 AA
1 AA
33554130 AAATATTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.33, C:0.00, G:0.29, T:0.38
Consensus pattern (20 bp):
AATTATAGGTGGTAATGGTT
Found at i:33560242 original size:44 final size:44
Alignment explanation
Indices: 33560163--33560273 Score: 150
Period size: 44 Copynumber: 2.5 Consensus size: 44
33560153 CCAAGTCACT
* * * *
33560163 CAATATAAATCGGGGTTTCAAGTTCCTCTTAACTTACTCGTGCC
1 CAATATGAATCGGGGCTTCAGGTTCCCCTTAACTTACTCGTGCC
* *
33560207 CAATATGAATTGGGGCTTCAGGTTCCCCTTTACTTACTCGTGCC
1 CAATATGAATCGGGGCTTCAGGTTCCCCTTAACTTACTCGTGCC
* *
33560251 TAATATGAATCGGGGCTTTAGGT
1 CAATATGAATCGGGGCTTCAGGT
33560274 CCCTTTTTTT
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
44 58 1.00
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.34
Consensus pattern (44 bp):
CAATATGAATCGGGGCTTCAGGTTCCCCTTAACTTACTCGTGCC
Found at i:33560973 original size:12 final size:12
Alignment explanation
Indices: 33560958--33560991 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
33560948 CAGTTGGTGT
33560958 TTCTCTTTCTTC
1 TTCTCTTTCTTC
33560970 TTCTCTTTCTT-
1 TTCTCTTTCTTC
33560981 TT-TCTTTCTTC
1 TTCTCTTTCTTC
33560992 CTTTCTCCCC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 8 0.38
11 2 0.10
12 11 0.52
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (12 bp):
TTCTCTTTCTTC
Found at i:33560978 original size:18 final size:18
Alignment explanation
Indices: 33560957--33560998 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
33560947 TCAGTTGGTG
33560957 TTTCTCTTTC-TTCTTCTC
1 TTTCTCTTTCTTTCTTC-C
*
33560975 TTTCTTTTTCTTTCTTCC
1 TTTCTCTTTCTTTCTTCC
33560993 TTTCTC
1 TTTCTC
33560999 CCCTGGCTCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 15 0.71
19 6 0.29
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTCTCTTTCTTTCTTCC
Found at i:33567152 original size:60 final size:58
Alignment explanation
Indices: 33567033--33567210 Score: 196
Period size: 60 Copynumber: 3.0 Consensus size: 58
33567023 AATCATCATC
* * * * *
33567033 ACCTACTCGTGGGAACTGCCCATGTCACC-ATATGAATCAGGGCTTCAGGTCCCCCTTT
1 ACCTACTCGTGGGAACTACCCACGCCACCAATATAAATC-GGGCTTCAGGTCTCCCTTT
* *
33567091 ACCTACTCATGGGAACTACCCACGCCATCCAATATAAATCGGGACTTCAGGTCTTCCTTT
1 ACCTACTCGTGGGAACTACCCACGCCA-CCAATATAAATCGGG-CTTCAGGTCTCCCTTT
* * * * *
33567151 ACTTACTTGTGAGAACTACCCACGCCACCCAAAATAAATCGGGGCTTTAGGTCTCCCTTT
1 ACCTACTCGTGGGAACTACCCACGCCA-CCAATATAAATC-GGGCTTCAGGTCTCCCTTT
33567211 TTCAATCAAA
Statistics
Matches: 101, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
58 23 0.23
59 5 0.05
60 70 0.69
61 3 0.03
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.26
Consensus pattern (58 bp):
ACCTACTCGTGGGAACTACCCACGCCACCAATATAAATCGGGCTTCAGGTCTCCCTTT
Found at i:33567924 original size:12 final size:12
Alignment explanation
Indices: 33567889--33567926 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
33567879 CCGATGTTTC
*
33567889 TCTTTCTTCTTC
1 TCTTTCTTCTTT
*
33567901 TCTTT-TTTTTT
1 TCTTTCTTCTTT
33567912 TCTTTCTTCTTT
1 TCTTTCTTCTTT
33567924 TCT
1 TCT
33567927 CCCTTAGCTC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
11 9 0.41
12 13 0.59
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (12 bp):
TCTTTCTTCTTT
Found at i:33567980 original size:12 final size:14
Alignment explanation
Indices: 33567958--33567996 Score: 55
Period size: 12 Copynumber: 2.9 Consensus size: 14
33567948 TTGTTCCCCC
33567958 TCTCTTTTTCTTCT
1 TCTCTTTTTCTTCT
*
33567972 TC-C-TTTTCTTTT
1 TCTCTTTTTCTTCT
33567984 TCTCTTTTTCTTC
1 TCTCTTTTTCTTC
33567997 CCTTTCAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
12 10 0.48
13 2 0.10
14 9 0.43
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (14 bp):
TCTCTTTTTCTTCT
Found at i:33570337 original size:19 final size:19
Alignment explanation
Indices: 33570313--33570353 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
33570303 ACTCAAATTA
**
33570313 TCAACTGACTGAGGGTTTC
1 TCAACTGACCAAGGGTTTC
33570332 TCAACTGACCAAGGGTTTC
1 TCAACTGACCAAGGGTTTC
33570351 TCA
1 TCA
33570354 CTAAACGCCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.29
Consensus pattern (19 bp):
TCAACTGACCAAGGGTTTC
Found at i:33574963 original size:15 final size:17
Alignment explanation
Indices: 33574945--33574987 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
33574935 TTAATAAGTC
33574945 AAATATTTA-AGTG-TA
1 AAATATTTATAGTGTTA
*
33574960 AAATATTTATGGTGTTA
1 AAATATTTATAGTGTTA
*
33574977 AAATATATATA
1 AAATATTTATA
33574988 TTTTTACTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
15 9 0.39
16 3 0.13
17 11 0.48
ACGTcount: A:0.47, C:0.00, G:0.12, T:0.42
Consensus pattern (17 bp):
AAATATTTATAGTGTTA
Found at i:33595021 original size:25 final size:25
Alignment explanation
Indices: 33594989--33595082 Score: 107
Period size: 25 Copynumber: 3.6 Consensus size: 25
33594979 AAAATAAGAG
*
33594989 ACAAAATTATAAAATTATTGTAAAA
1 ACAAAATTATAAAATTATTATAAAA
* *
33595014 ACAAAATTATAAAATTCTTAAAAAAA
1 ACAAAATTATAAAATTATT-ATAAAA
* *
33595040 AGAATATATTATAAAATTATTATAAAG
1 ACAA-A-ATTATAAAATTATTATAAAA
*
33595067 ATAAAATTATAAAATT
1 ACAAAATTATAAAATT
33595083 TCAAAAAAAT
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
25 29 0.50
26 8 0.14
27 8 0.14
28 13 0.22
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (25 bp):
ACAAAATTATAAAATTATTATAAAA
Found at i:33595099 original size:25 final size:24
Alignment explanation
Indices: 33594991--33595099 Score: 74
Period size: 25 Copynumber: 4.2 Consensus size: 24
33594981 AATAAGAGAC
*** *
33594991 AAAATTATAAAATTATTGTAAAAAC
1 AAAATTATAAAATT-TAAAAAAAAT
*
33595016 AAAATTATAAAATTCTTAAAAAAAAG
1 AAAATTATAAAA-T-TTAAAAAAAAT
* * *
33595042 AATATATTATAAAATTATTATAAAGAT
1 AA-A-ATTATAAAATT-TAAAAAAAAT
*
33595069 AAAATTATAAAATTTCAAAAAAAT
1 AAAATTATAAAATTTAAAAAAAAT
33595093 AACAATT
1 AA-AATT
33595100 GTTATAAAAA
Statistics
Matches: 67, Mismatches: 11, Indels: 12
0.74 0.12 0.13
Matches are distributed among these distances:
24 9 0.13
25 27 0.40
26 11 0.16
27 11 0.16
28 9 0.13
ACGTcount: A:0.61, C:0.04, G:0.03, T:0.32
Consensus pattern (24 bp):
AAAATTATAAAATTTAAAAAAAAT
Found at i:33595105 original size:53 final size:53
Alignment explanation
Indices: 33594994--33595108 Score: 144
Period size: 53 Copynumber: 2.2 Consensus size: 53
33594984 AAGAGACAAA
* * *
33594994 ATTATAAAATTATTGTAAAAACAAAATTATAAAATTCTTAAAAAAAAGAATAT
1 ATTATAAAATTATTATAAAAACAAAATTATAAAATTCTAAAAAAAAACAATAT
* *
33595047 ATTATAAAATTATTATAAAGATAAAATTATAAAATT-TCAAAAAAATAACAAT-T
1 ATTATAAAATTATTATAAAAACAAAATTATAAAATTCT-AAAAAAA-AACAATAT
*
33595100 GTTATAAAA
1 ATTATAAAA
33595109 ATTTTAAAAT
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
52 1 0.02
53 48 0.89
54 5 0.09
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.33
Consensus pattern (53 bp):
ATTATAAAATTATTATAAAAACAAAATTATAAAATTCTAAAAAAAAACAATAT
Found at i:33595339 original size:2 final size:2
Alignment explanation
Indices: 33595334--33595379 Score: 85
Period size: 2 Copynumber: 23.5 Consensus size: 2
33595324 TTAACAAAAA
33595334 AT AT AT AT AT AT AT AT AT AT -T AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
33595375 AT AT A
1 AT AT A
33595380 AAAGTAAAAG
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 42 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:33597874 original size:19 final size:18
Alignment explanation
Indices: 33597835--33597874 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
33597825 AAAGACTTAT
*
33597835 TTAAATTTTTTTAAATAA
1 TTAAATTTTTTTAAAAAA
33597853 TTAAATTTTTTTAAAAATA
1 TTAAATTTTTTTAAAAA-A
33597872 TTA
1 TTA
33597875 TGTCATAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
TTAAATTTTTTTAAAAAA
Found at i:33604447 original size:39 final size:39
Alignment explanation
Indices: 33604393--33604513 Score: 140
Period size: 39 Copynumber: 3.2 Consensus size: 39
33604383 ACCCCAAAGT
* *
33604393 CTTATTCTCGCTCAAGCAGTTTCCAGCAGAATGCATCTC
1 CTTATTCGCGCTCAAGCAGTTTTCAGCAGAATGCATCTC
33604432 CTTATTCGCGCTCAAGCAGTTTTCAGCAGAATGC-T-T-
1 CTTATTCGCGCTCAAGCAGTTTTCAGCAGAATGCATCTC
* * * * * * *
33604468 CTTATTCGCACACAAGTAATTTTCAGCACAATTCACCTC
1 CTTATTCGCGCTCAAGCAGTTTTCAGCAGAATGCATCTC
33604507 CTTATTC
1 CTTATTC
33604514 TGGATATAAT
Statistics
Matches: 70, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
36 28 0.40
37 1 0.01
38 2 0.03
39 39 0.56
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.33
Consensus pattern (39 bp):
CTTATTCGCGCTCAAGCAGTTTTCAGCAGAATGCATCTC
Found at i:33604491 original size:36 final size:39
Alignment explanation
Indices: 33604405--33604513 Score: 116
Period size: 36 Copynumber: 2.9 Consensus size: 39
33604395 TATTCTCGCT
* * * *
33604405 CAAGCAGTTTCCAGCAGAATGCATCTCCTTATTCGCGCT
1 CAAGCAATTTTCAGCAGAATGCATCTCCTTATTCGCACA
*
33604444 CAAGCAGTTTTCAGCAGAATGC-T-T-CTTATTCGCACA
1 CAAGCAATTTTCAGCAGAATGCATCTCCTTATTCGCACA
* * * *
33604480 CAAGTAATTTTCAGCACAATTCACCTCCTTATTC
1 CAAGCAATTTTCAGCAGAATGCATCTCCTTATTC
33604514 TGGATATAAT
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
36 28 0.47
37 1 0.02
38 2 0.03
39 28 0.47
ACGTcount: A:0.27, C:0.28, G:0.14, T:0.31
Consensus pattern (39 bp):
CAAGCAATTTTCAGCAGAATGCATCTCCTTATTCGCACA
Found at i:33612128 original size:31 final size:31
Alignment explanation
Indices: 33612087--33612150 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
33612077 TAATAAATAA
*
33612087 AGAAACAAAGAAAGAAAATGGCACATCCTTT
1 AGAAACAAAGAAACAAAATGGCACATCCTTT
*
33612118 AGAAAGAAAGAAACAAAATGGCACATCCTTT
1 AGAAACAAAGAAACAAAATGGCACATCCTTT
33612149 AG
1 AG
33612151 GGCTGAATCT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.52, C:0.16, G:0.17, T:0.16
Consensus pattern (31 bp):
AGAAACAAAGAAACAAAATGGCACATCCTTT
Found at i:33618533 original size:15 final size:15
Alignment explanation
Indices: 33618513--33618541 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
33618503 CTTGCCAATG
33618513 TAATGTGATTGCAAC
1 TAATGTGATTGCAAC
33618528 TAATGTGATTGCAA
1 TAATGTGATTGCAA
33618542 GAAAGATAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.34
Consensus pattern (15 bp):
TAATGTGATTGCAAC
Found at i:33618796 original size:33 final size:33
Alignment explanation
Indices: 33618755--33618841 Score: 102
Period size: 33 Copynumber: 2.6 Consensus size: 33
33618745 TTTCAATATC
*
33618755 ATATATTTTATTTTTATTTTTTATTATAATCTT
1 ATATATTTTATTTTTATTTTTTAATATAATCTT
* * * *
33618788 ATATATTTTGTTTTCATTTCTTAATATAATTTT
1 ATATATTTTATTTTTATTTTTTAATATAATCTT
* *
33618821 CTATATTATATATTTTATTTT
1 ATATATTTTAT-TTTTATTTT
33618842 AATTTTTTTC
Statistics
Matches: 43, Mismatches: 10, Indels: 1
0.80 0.19 0.02
Matches are distributed among these distances:
33 36 0.84
34 7 0.16
ACGTcount: A:0.28, C:0.05, G:0.01, T:0.67
Consensus pattern (33 bp):
ATATATTTTATTTTTATTTTTTAATATAATCTT
Found at i:33619963 original size:45 final size:45
Alignment explanation
Indices: 33619900--33619996 Score: 137
Period size: 45 Copynumber: 2.2 Consensus size: 45
33619890 GTTGATATAT
*
33619900 TAATT-TTATTTAACTATAATAAATATTATAAAGAATATTATTTA
1 TAATTATTATTTAACTATAATAAATATAATAAAGAATATTATTTA
*
33619944 -ATATTATTATTTGAA-TATAATAAATGTAATAAAGAATATTATTTA
1 TA-ATTATTATTT-AACTATAATAAATATAATAAAGAATATTATTTA
33619989 TAATTATT
1 TAATTATT
33619997 TAAATTTAAT
Statistics
Matches: 47, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
43 1 0.02
44 3 0.06
45 40 0.85
46 3 0.06
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.47
Consensus pattern (45 bp):
TAATTATTATTTAACTATAATAAATATAATAAAGAATATTATTTA
Found at i:33620062 original size:23 final size:22
Alignment explanation
Indices: 33620034--33620107 Score: 69
Period size: 23 Copynumber: 3.3 Consensus size: 22
33620024 TTTTAATATT
33620034 AAATATTATTTAATTATAATAA
1 AAATATTATTTAATTATAATAA
* * *
33620056 AAGATA-TAATTATCTTCTAATACA
1 AA-ATATTATTTA-ATTATAATA-A
* *
33620080 AAATATTATTAAATTATTATAA
1 AAATATTATTTAATTATAATAA
33620102 AAATAT
1 AAATAT
33620108 GTTTGTATAT
Statistics
Matches: 40, Mismatches: 8, Indels: 8
0.71 0.14 0.14
Matches are distributed among these distances:
22 14 0.35
23 19 0.47
24 7 0.17
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (22 bp):
AAATATTATTTAATTATAATAA
Found at i:33630696 original size:20 final size:21
Alignment explanation
Indices: 33630671--33630714 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
33630661 GACTTCTTGA
33630671 TTAGCTTAA-TTTAAGTTATT
1 TTAGCTTAATTTTAAGTTATT
*
33630691 TTAGCTTAATTTTATGTTATT
1 TTAGCTTAATTTTAAGTTATT
33630712 TTA
1 TTA
33630715 TTTTAAATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 9 0.41
21 13 0.59
ACGTcount: A:0.27, C:0.05, G:0.09, T:0.59
Consensus pattern (21 bp):
TTAGCTTAATTTTAAGTTATT
Found at i:33645641 original size:20 final size:20
Alignment explanation
Indices: 33645616--33645668 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
33645606 AAGTTCTCTT
33645616 CTCTAACCGATTATAGGAGA
1 CTCTAACCGATTATAGGAGA
33645636 CTCTAACCGATTATAGGAGA
1 CTCTAACCGATTATAGGAGA
* *
33645656 CCCTAACCAATTA
1 CTCTAACCGATTA
33645669 CAAACTTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.36, C:0.25, G:0.15, T:0.25
Consensus pattern (20 bp):
CTCTAACCGATTATAGGAGA
Found at i:33651967 original size:62 final size:62
Alignment explanation
Indices: 33651855--33652010 Score: 264
Period size: 62 Copynumber: 2.5 Consensus size: 62
33651845 GAAACTATAG
33651855 GCATG-GAAAAGCAA-T-GAAGTAAATGAGAAATTTAATTAGCACATGGAAGGCGGCTTAGAT
1 GCATGAGAAAA-CAATTAGAAGTAAATGAGAAATTTAATTAGCACATGGAAGGCGGCTTAGAT
*
33651915 GCATGAGAAAACAATTAGAAGTAAATGAGAAATTTAATTAGCGCATGGAAGGCGGCTTAGAT
1 GCATGAGAAAACAATTAGAAGTAAATGAGAAATTTAATTAGCACATGGAAGGCGGCTTAGAT
*
33651977 GCATGAAAAAACAATTAGAAGTAAATGAGAAATT
1 GCATGAGAAAACAATTAGAAGTAAATGAGAAATT
33652011 AGCTTTTCAA
Statistics
Matches: 91, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
60 8 0.09
61 6 0.07
62 77 0.85
ACGTcount: A:0.45, C:0.09, G:0.24, T:0.22
Consensus pattern (62 bp):
GCATGAGAAAACAATTAGAAGTAAATGAGAAATTTAATTAGCACATGGAAGGCGGCTTAGAT
Found at i:33669792 original size:2 final size:2
Alignment explanation
Indices: 33669785--33669834 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
33669775 CACATTCAAA
33669785 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
33669827 AT AT AT AT
1 AT AT AT AT
33669835 GCAGAAATAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:33678319 original size:24 final size:24
Alignment explanation
Indices: 33678283--33678336 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
33678273 ACAGTTGCAC
33678283 TGAATATTCTAGAATGAAATTATT
1 TGAATATTCTAGAATGAAATTATT
* **
33678307 TGAATATTTTAGAATGAGGTTATT
1 TGAATATTCTAGAATGAAATTATT
33678331 T-AATAT
1 TGAATAT
33678337 AAAAAATTCA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 5 0.19
24 22 0.81
ACGTcount: A:0.39, C:0.02, G:0.15, T:0.44
Consensus pattern (24 bp):
TGAATATTCTAGAATGAAATTATT
Found at i:33682770 original size:18 final size:18
Alignment explanation
Indices: 33682729--33682771 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
33682719 AAAGTCATGT
*
33682729 TTTAATCTAAATAGACAC
1 TTTAATTTAAATAGACAC
*
33682747 -TTAATTTAAATAGTCAC
1 TTTAATTTAAATAGACAC
33682764 TTTAATTT
1 TTTAATTT
33682772 GAGTAATCAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 15 0.68
18 7 0.32
ACGTcount: A:0.40, C:0.12, G:0.05, T:0.44
Consensus pattern (18 bp):
TTTAATTTAAATAGACAC
Found at i:33687748 original size:20 final size:20
Alignment explanation
Indices: 33687703--33687740 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
33687693 TTTTGGCTCC
33687703 ATTTGACTTATTGGAGTATA
1 ATTTGACTTATTGGAGTATA
33687723 ATTTGACTTATTGGAGTA
1 ATTTGACTTATTGGAGTA
33687741 AGATTTGAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.29, C:0.05, G:0.21, T:0.45
Consensus pattern (20 bp):
ATTTGACTTATTGGAGTATA
Found at i:33690675 original size:2 final size:2
Alignment explanation
Indices: 33690668--33690715 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
33690658 NNNNNNNNNN
33690668 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
33690710 AT AT AT
1 AT AT AT
33690716 TGTAAATGCC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:33691056 original size:66 final size:66
Alignment explanation
Indices: 33690972--33691099 Score: 184
Period size: 66 Copynumber: 1.9 Consensus size: 66
33690962 TCATTTTCCT
* * *
33690972 AACATCTAATAAGCCATTCCTTAATGTGCTCTTCGATGACCAGAACGTTCTCCCATGATTGAGCT
1 AACATCTAATAAGCCATTCCTTAATGTGCTCTTCCATGACAAGAACGCTCTCCCATGATTGAGCT
33691037 C
66 C
* * * * *
33691038 AACATTTAATAAGTCATTCTTTAATGTGCTCTTCCATGACAAGCACGCTCTCTCATGATTGA
1 AACATCTAATAAGCCATTCCTTAATGTGCTCTTCCATGACAAGAACGCTCTCCCATGATTGA
33691100 ACTTAGAGGC
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
66 54 1.00
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (66 bp):
AACATCTAATAAGCCATTCCTTAATGTGCTCTTCCATGACAAGAACGCTCTCCCATGATTGAGCT
C
Found at i:33691659 original size:13 final size:14
Alignment explanation
Indices: 33691626--33691653 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
33691616 TGCATGTCAG
33691626 ATAATATCTTGAAA
1 ATAATATCTTGAAA
33691640 ATAATATCTTGAAA
1 ATAATATCTTGAAA
33691654 TGATATGTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.36
Consensus pattern (14 bp):
ATAATATCTTGAAA
Found at i:33702496 original size:24 final size:23
Alignment explanation
Indices: 33702451--33702496 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
33702441 ATTAAAATAA
** *
33702451 AAATAGAAAAAGAATCTTAATCT
1 AAATAGAAAAAGAAAATAAATCT
33702474 AAATAGAATAAAGAAAATAAATC
1 AAATAGAA-AAAGAAAATAAATC
33702497 CTAGATCAAC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.63, C:0.07, G:0.09, T:0.22
Consensus pattern (23 bp):
AAATAGAAAAAGAAAATAAATCT
Found at i:33702764 original size:35 final size:35
Alignment explanation
Indices: 33702718--33702836 Score: 211
Period size: 35 Copynumber: 3.4 Consensus size: 35
33702708 TGTAATCAAC
33702718 AGTGATACATGAATCTATTGATTTATGCATGCAAT
1 AGTGATACATGAATCTATTGATTTATGCATGCAAT
33702753 AGTGATACATGAATCTATTGATTTATGCATGCAAT
1 AGTGATACATGAATCTATTGATTTATGCATGCAAT
* *
33702788 AGTGATACATGAATCTATTGATTCATGTATGCAAT
1 AGTGATACATGAATCTATTGATTTATGCATGCAAT
*
33702823 ATTGATACATGAAT
1 AGTGATACATGAAT
33702837 ACAATAAATG
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 81 1.00
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.37
Consensus pattern (35 bp):
AGTGATACATGAATCTATTGATTTATGCATGCAAT
Found at i:33727691 original size:27 final size:27
Alignment explanation
Indices: 33727661--33727713 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
33727651 GTATCAATAA
*
33727661 TGTCTTTTACTAAATTAGTTAATTTTT
1 TGTCTTTTACTAAATTAGTGAATTTTT
*
33727688 TGTCTTTTACTAAATTGGTGAATTTT
1 TGTCTTTTACTAAATTAGTGAATTTT
33727714 AAGAAAAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.25, C:0.08, G:0.11, T:0.57
Consensus pattern (27 bp):
TGTCTTTTACTAAATTAGTGAATTTTT
Found at i:33732113 original size:80 final size:79
Alignment explanation
Indices: 33731925--33732152 Score: 278
Period size: 78 Copynumber: 2.9 Consensus size: 79
33731915 GAGTTCCATC
* * * * * * *
33731925 TATGAGGTTATGACATGTATACCATGAGATGTACGTGTTAAGAATATCATTTACAATATGGACTA
1 TATGAGATTATGACATGTATGCCATGAGATGTATGTGTTGAGAATATCATATACACTATGGGCTA
33731990 AGCATGAGATGAAT
66 AGCATGAGATGAAT
* * * *
33732004 TATGAGATTA-GACATGTATGCCATGAGATGTATGTATTGAGTATGTCATGTACACTATGGGCTA
1 TATGAGATTATGACATGTATGCCATGAGATGTATGTGTTGAGAATATCATATACACTATGGGCTA
* *
33732068 AGCATGGGAATGCAT
66 AGCATGAG-ATGAAT
* * * * *
33732083 TATGAGATTATGAAATGTATGCCATGAGATGTATGCGTTGAGAATTTCGTATACACTATAGGCTA
1 TATGAGATTATGACATGTATGCCATGAGATGTATGTGTTGAGAATATCATATACACTATGGGCTA
33732148 AGCAT
66 AGCAT
33732153 AAAAATGGTT
Statistics
Matches: 127, Mismatches: 20, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
78 52 0.41
79 24 0.19
80 51 0.40
ACGTcount: A:0.33, C:0.11, G:0.24, T:0.32
Consensus pattern (79 bp):
TATGAGATTATGACATGTATGCCATGAGATGTATGTGTTGAGAATATCATATACACTATGGGCTA
AGCATGAGATGAAT
Found at i:33732167 original size:80 final size:78
Alignment explanation
Indices: 33731925--33732152 Score: 260
Period size: 80 Copynumber: 2.9 Consensus size: 78
33731915 GAGTTCCATC
* * * * * *
33731925 TATGAGGTTATGACATGTATACCATGAGATGTACGTGTTAAGAATATCATTTACAATATGGACTA
1 TATGAGATTATGACATGTATGCCATGAGATGTATGTGTTGAGAATATCATATACACTATGG-CTA
*
33731990 AGCATGAGATGAAT
65 AGCATGAAATGAAT
* * * *
33732004 TATGAGATTA-GACATGTATGCCATGAGATGTATGTATTGAGTATGTCATGTACACTATGGGCTA
1 TATGAGATTATGACATGTATGCCATGAGATGTATGTGTTGAGAATATCATATACACTAT-GGCTA
* *
33732068 AGCATGGGAATGCAT
65 AGCAT-GAAATGAAT
* * * *
33732083 TATGAGATTATGAAATGTATGCCATGAGATGTATGCGTTGAGAATTTCGTATACACTATAGGCTA
1 TATGAGATTATGACATGTATGCCATGAGATGTATGTGTTGAGAATATCATATACACTAT-GGCTA
33732148 AGCAT
65 AGCAT
33732153 AAAAATGGTT
Statistics
Matches: 126, Mismatches: 20, Indels: 5
0.83 0.13 0.03
Matches are distributed among these distances:
78 48 0.38
79 27 0.21
80 51 0.40
ACGTcount: A:0.33, C:0.11, G:0.24, T:0.32
Consensus pattern (78 bp):
TATGAGATTATGACATGTATGCCATGAGATGTATGTGTTGAGAATATCATATACACTATGGCTAA
GCATGAAATGAAT
Found at i:33734390 original size:20 final size:20
Alignment explanation
Indices: 33734362--33734399 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
33734352 ATTCTGTGTA
*
33734362 AAATGTATCGATATATTCCC
1 AAATATATCGATATATTCCC
*
33734382 AAATATATCGATGTATTC
1 AAATATATCGATATATTC
33734400 TTTCCAGAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.37
Consensus pattern (20 bp):
AAATATATCGATATATTCCC
Found at i:33738785 original size:2 final size:2
Alignment explanation
Indices: 33738778--33738802 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
33738768 GGAAGGATCA
33738778 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
33738803 CATAATTTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:33741138 original size:2 final size:2
Alignment explanation
Indices: 33741131--33741168 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
33741121 ATTTGTAGAG
33741131 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
33741169 GTTGTGCATG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:33747277 original size:16 final size:16
Alignment explanation
Indices: 33747256--33747297 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
33747246 TATCTATGTA
* *
33747256 TTTATGAATATATATG
1 TTTATGAATATAAAAG
33747272 TTTATGAA-ATAAAAG
1 TTTATGAATATAAAAG
*
33747287 CTTATGAATAT
1 TTTATGAATAT
33747298 GGCATATGAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
15 12 0.55
16 10 0.45
ACGTcount: A:0.43, C:0.02, G:0.12, T:0.43
Consensus pattern (16 bp):
TTTATGAATATAAAAG
Found at i:33750646 original size:58 final size:58
Alignment explanation
Indices: 33750556--33750668 Score: 190
Period size: 58 Copynumber: 1.9 Consensus size: 58
33750546 TTTTTGAACA
* *
33750556 CACTTCTGCAGTTGTTCACCTGTAACGAGATTGGCCACTTTGTAGTTTGATTAGAATG
1 CACTTCTGCAGTTGTTCACCTGTAACGAGATTGACCACTTTGTAGCTTGATTAGAATG
* *
33750614 CACTTTTGCAGTTGTTCACCTGTAAGGAGATTGACCACTTTGTAGCTTGATTAGA
1 CACTTCTGCAGTTGTTCACCTGTAACGAGATTGACCACTTTGTAGCTTGATTAGA
33750669 GAGTAGTAAG
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
58 51 1.00
ACGTcount: A:0.23, C:0.19, G:0.22, T:0.36
Consensus pattern (58 bp):
CACTTCTGCAGTTGTTCACCTGTAACGAGATTGACCACTTTGTAGCTTGATTAGAATG
Found at i:33752595 original size:18 final size:18
Alignment explanation
Indices: 33752572--33752617 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
33752562 GTGATAGAAA
33752572 ATGCTGGGCTAAAAGGAT
1 ATGCTGGGCTAAAAGGAT
* * *
33752590 ATGCTGGACTGAGAGGAT
1 ATGCTGGGCTAAAAGGAT
*
33752608 ACGCTGGGCT
1 ATGCTGGGCT
33752618 GCTGGGATAG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.26, C:0.15, G:0.37, T:0.22
Consensus pattern (18 bp):
ATGCTGGGCTAAAAGGAT
Found at i:33761234 original size:21 final size:23
Alignment explanation
Indices: 33761208--33761254 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
33761198 TCTTTATTAA
*
33761208 AATTTTT-ATT-TTTATTTAGAT
1 AATTTTTAATTCTATATTTAGAT
*
33761229 AATTTTTAATTCTATATTTATAT
1 AATTTTTAATTCTATATTTAGAT
33761252 AAT
1 AAT
33761255 AACAAGGTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 7 0.32
22 3 0.14
23 12 0.55
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (23 bp):
AATTTTTAATTCTATATTTAGAT
Found at i:33761405 original size:30 final size:30
Alignment explanation
Indices: 33761371--33761445 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
33761361 TCTCTGTATT
*
33761371 TTTATTTTAAATCAAAT-AATTTTTCAAATA
1 TTTATTTTAAATCAAATAAAATTTT-AAATA
* *
33761401 TTTATTTTGAATCAAATAAAATTTTATATA
1 TTTATTTTAAATCAAATAAAATTTTAAATA
*
33761431 TTTATTTTAAGTCAA
1 TTTATTTTAAATCAA
33761446 TAGTTGATTT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
30 33 0.85
31 6 0.15
ACGTcount: A:0.41, C:0.05, G:0.03, T:0.51
Consensus pattern (30 bp):
TTTATTTTAAATCAAATAAAATTTTAAATA
Found at i:33770688 original size:23 final size:23
Alignment explanation
Indices: 33770662--33770715 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
33770652 ATTAGTTTTT
**
33770662 AATTATATTAATTAATCAATAAA
1 AATTATATTAAAAAATCAATAAA
* *
33770685 AATTATTTTAAAAAATCATTAAA
1 AATTATATTAAAAAATCAATAAA
*
33770708 AAATATAT
1 AATTATAT
33770716 AATATATAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (23 bp):
AATTATATTAAAAAATCAATAAA
Found at i:33781973 original size:26 final size:26
Alignment explanation
Indices: 33781913--33781970 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
33781903 ATACTTATAC
* *
33781913 ATTTTTATATTACAAATGATTTTTTT
1 ATTTTTATATTAAAAATGATTTTATT
33781939 ATTTTTATATTAAAAAT-ATTTAATATT
1 ATTTTTATATTAAAAATGATTT--TATT
33781966 ATTTT
1 ATTTT
33781971 ATAAAAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 4 0.14
26 16 0.57
27 8 0.29
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (26 bp):
ATTTTTATATTAAAAATGATTTTATT
Found at i:33782149 original size:2 final size:2
Alignment explanation
Indices: 33782142--33782184 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
33782132 ATCCATTTTG
33782142 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
33782184 A
1 A
33782185 ATANNNNNNN
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:33782570 original size:25 final size:25
Alignment explanation
Indices: 33782536--33782585 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
33782526 ACTTTCATCC
33782536 CTAAAAATTAACTTAAATGTAAATT
1 CTAAAAATTAACTTAAATGTAAATT
33782561 CTAAAAATTAACTTAAATGTAAATT
1 CTAAAAATTAACTTAAATGTAAATT
33782586 TACTATCATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.52, C:0.08, G:0.04, T:0.36
Consensus pattern (25 bp):
CTAAAAATTAACTTAAATGTAAATT
Found at i:33782849 original size:28 final size:28
Alignment explanation
Indices: 33782808--33782919 Score: 99
Period size: 28 Copynumber: 4.1 Consensus size: 28
33782798 TACCTATCAG
* * *
33782808 AAGTGGATAGATAATTTTAACTCACCAA
1 AAGTTGATTGATAATTTTAACCCACCAA
*
33782836 AATTTGA-TGAATAA--TT-ACCCACCAA
1 AAGTTGATTG-ATAATTTTAACCCACCAA
**
33782861 AAGTTGATTGATAATTTTAACCCATTAA
1 AAGTTGATTGATAATTTTAACCCACCAA
* *
33782889 AAGTT-AATGATACTTTTTAACCCACCAA
1 AAGTTGATTGATA-ATTTTAACCCACCAA
33782917 AAG
1 AAG
33782920 AGGATAAACA
Statistics
Matches: 67, Mismatches: 11, Indels: 12
0.74 0.12 0.13
Matches are distributed among these distances:
25 18 0.27
26 4 0.06
27 9 0.13
28 36 0.54
ACGTcount: A:0.42, C:0.16, G:0.11, T:0.31
Consensus pattern (28 bp):
AAGTTGATTGATAATTTTAACCCACCAA
Found at i:33796027 original size:13 final size:13
Alignment explanation
Indices: 33796009--33796050 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
33795999 AATGTTTAGT
33796009 AAATAAATTATAC
1 AAATAAATTATAC
*
33796022 AAATAAA--A-AT
1 AAATAAATTATAC
33796032 AAATAAATTATAC
1 AAATAAATTATAC
33796045 AAATAA
1 AAATAA
33796051 TCGTCAGTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
10 8 0.33
11 1 0.04
12 1 0.04
13 14 0.58
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.26
Consensus pattern (13 bp):
AAATAAATTATAC
Found at i:33802629 original size:2 final size:2
Alignment explanation
Indices: 33802610--33802656 Score: 76
Period size: 2 Copynumber: 23.5 Consensus size: 2
33802600 GAGGAGATGG
* *
33802610 AT AT AT AC AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
33802652 AT AT A
1 AT AT A
33802657 AATGTTATGG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:33803832 original size:28 final size:27
Alignment explanation
Indices: 33803792--33803845 Score: 81
Period size: 28 Copynumber: 2.0 Consensus size: 27
33803782 ATCTAGCATC
*
33803792 CTCAGCAATCTAGAGTTAGAAATGATAT
1 CTCAGCAATCTAGAATTAGAAA-GATAT
*
33803820 CTCAGCATTCTAGAATTAGAAAGATA
1 CTCAGCAATCTAGAATTAGAAAGATA
33803846 CAACTTTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 4 0.17
28 20 0.83
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.28
Consensus pattern (27 bp):
CTCAGCAATCTAGAATTAGAAAGATAT
Found at i:33810362 original size:27 final size:27
Alignment explanation
Indices: 33810216--33810585 Score: 205
Period size: 27 Copynumber: 13.6 Consensus size: 27
33810206 ATATGGCATG
* *
33810216 TAACAACTCAATTTTTCAACAT-GACATA
1 TAACAACT-AAATTTTCAACATAG-CGTA
* * *
33810244 TAACAACTAAATCTTCAATATAACGTA
1 TAACAACTAAATTTTCAACATAGCGTA
* * * *
33810271 AAACAATTATATTTTTCAACAT-GACATA
1 TAACAACTA-AATTTTCAACATAG-CGTA
* * * *
33810299 TAATAATTTACATTTTTCAACAT-GACATA
1 TAACAA-CTA-AATTTTCAACATAG-CGTA
* * ** *
33810328 TAATAACTAAATCTTCAACATAATGTG
1 TAACAACTAAATTTTCAACATAGCGTA
* * * *
33810355 TAACAACTAAGTTTTTCAAAATAGCATG
1 TAACAACTAA-ATTTTCAACATAGCGTA
* * *
33810383 TAATAACTAAATTTTAAACATGGCGTA
1 TAACAACTAAATTTTCAACATAGCGTA
* * *
33810410 TAATAACTAAATTTTAAACATGGCGTA
1 TAACAACTAAATTTTCAACATAGCGTA
* * *
33810437 TAATAACTAAATCTTCAACATGGCGTA
1 TAACAACTAAATTTTCAACATAGCGTA
* * * * *
33810464 TAACAAGTACATATTTCAACTTAGTGTG
1 TAACAACTAAAT-TTTCAACATAGCGTA
* *
33810492 TAATAACTAAATTTTTAACAT-GACGTA
1 TAACAACTAAATTTTCAACATAG-CGTA
* *
33810519 TAACAACTAAATTTTCAACATAACGTG
1 TAACAACTAAATTTTCAACATAGCGTA
*
33810546 TAACAA-T-TATTTTCAACAT-GACGTA
1 TAACAACTAAATTTTCAACATAG-CGTA
* *
33810571 TAAAAATTAAATTTT
1 TAACAACTAAATTTT
33810586 AGAACATGAC
Statistics
Matches: 268, Mismatches: 62, Indels: 25
0.75 0.17 0.07
Matches are distributed among these distances:
25 19 0.07
26 3 0.01
27 154 0.57
28 65 0.24
29 27 0.10
ACGTcount: A:0.44, C:0.15, G:0.08, T:0.34
Consensus pattern (27 bp):
TAACAACTAAATTTTCAACATAGCGTA
Found at i:33810370 original size:84 final size:82
Alignment explanation
Indices: 33810202--33810430 Score: 228
Period size: 84 Copynumber: 2.8 Consensus size: 82
33810192 TAAGTAAATC
* * * * * *
33810202 TTCAATATGGCATGTAACAACTCAATTTTTCAACATGACATATAACAACTAAATCTTCAATATAA
1 TTCAAAATAGCATATAATAACT-AATTTTTCAACATGACATATAATAACTAAATCTTCAACATAA
*
33810267 CGTAAAACAATTATATTT
65 CGTAAAACAACTATATTT
* *
33810285 TTCAACAT-GACATATAATAATTTACATTTTTCAACATGACATATAATAACTAAATCTTCAACAT
1 TTCAAAATAG-CATATAATAA-CTA-ATTTTTCAACATGACATATAATAACTAAATCTTCAACAT
* **
33810349 AATGTGTAACAACTA-AGTTT
63 AACGTAAAACAACTATA-TTT
* * * * * * *
33810369 TTCAAAATAGCATGTAATAACTAAATTTTAAACATGGCGTATAATAACTAAATTTTAAACAT
1 TTCAAAATAGCATATAATAACTAATTTTTCAACATGACATATAATAACTAAATCTTCAACAT
33810431 GGCGTATAAT
Statistics
Matches: 122, Mismatches: 19, Indels: 11
0.80 0.12 0.07
Matches are distributed among these distances:
82 34 0.28
83 19 0.16
84 68 0.56
85 1 0.01
ACGTcount: A:0.44, C:0.15, G:0.07, T:0.34
Consensus pattern (82 bp):
TTCAAAATAGCATATAATAACTAATTTTTCAACATGACATATAATAACTAAATCTTCAACATAAC
GTAAAACAACTATATTT
Found at i:33810373 original size:55 final size:54
Alignment explanation
Indices: 33810310--33810601 Score: 187
Period size: 55 Copynumber: 5.4 Consensus size: 54
33810300 AATAATTTAC
* *
33810310 ATTTTTCAACATGACATATAATAACTAAATCTTCAACATAATGTGTAACAACTA
1 ATTTTTCAACATGACATATAATAACTAAATCTTCAACATAACGTATAACAACTA
* * * * ** *
33810364 AGTTTTTCAAAAT-AGCATGTAATAACTAAATTTTAAACATGGCGTATAATAACTA
1 A-TTTTTCAACATGA-CATATAATAACTAAATCTTCAACATAACGTATAACAACTA
* * * * ** *
33810419 AATTTTAAACATGGCGTATAATAACTAAATCTTCAACATGGCGTATAACAAGTA
1 ATTTTTCAACATGACATATAATAACTAAATCTTCAACATAACGTATAACAACTA
* * ** * * * *
33810473 CATATTTCAAC-TTAGTGTGTAATAACTAAATTTTTAACATGACGTATAACAACTA
1 -ATTTTTCAACATGA-CATATAATAACTAAATCTTCAACATAACGTATAACAACTA
* * * * * * * * * *
33810528 AATTTTCAACATAACGTGTAACAA-T-TATTTTCAACATGACGTATAAAAATTAA
1 ATTTTTCAACATGACATATAATAACTAAATCTTCAACATAACGTATAACAACT-A
**
33810581 ATTTTAGAACATGACATATAA
1 ATTTTTCAACATGACATATAA
33810602 CACTACATTT
Statistics
Matches: 186, Mismatches: 45, Indels: 15
0.76 0.18 0.06
Matches are distributed among these distances:
52 22 0.12
53 17 0.09
54 61 0.33
55 86 0.46
ACGTcount: A:0.43, C:0.14, G:0.09, T:0.34
Consensus pattern (54 bp):
ATTTTTCAACATGACATATAATAACTAAATCTTCAACATAACGTATAACAACTA
Found at i:33810445 original size:82 final size:80
Alignment explanation
Indices: 33810196--33810617 Score: 276
Period size: 82 Copynumber: 5.2 Consensus size: 80
33810186 GAACCTTAAG
* * * * * * * * *
33810196 TAAATCTTCAATATGGCATGTAACAACTCAATTTTTCAACATGACATATAACAACTAAATCTTCA
1 TAAATTTTCAACATAGCGTGTAACAA-T-AAATTTTCAACATGACGTATAATAACTAAATTTTAA
* * * *
33810261 ATATAACGTAAAACAAT
64 ACATGACGTATAACAAC
* * * * * * *
33810278 TATATTTTTCAACAT-GACATATAATAATTTACATTTTTCAACATGACATATAATAACTAAATCT
1 TA-AATTTTCAACATAG-CGTGTAACAA--TA-AATTTTCAACATGACGTATAATAACTAAATTT
* * * *
33810342 TCAACATAATGTGTAACAAC
61 TAAACATGACGTATAACAAC
* * * * * *
33810362 TAAGTTTTTCAAAATAGCATGTAATAACTAAATTTTAAACATGGCGTATAATAACTAAATTTTAA
1 TAA-ATTTTCAACATAGCGTGTAACAA-TAAATTTTCAACATGACGTATAATAACTAAATTTTAA
* *
33810427 ACATGGCGTATAATAAC
64 ACATGACGTATAACAAC
* * * * * * * *
33810444 TAAATCTTCAACATGGCGTATAACAAGTACATATTTCAAC-TTAGTGTGTAATAACTAAATTTTT
1 TAAATTTTCAACATAGCGTGTAACAA-TAAAT-TTTCAACATGA-CGTATAATAACTAAATTTTA
33810508 AACATGACGTATAACAAC
63 AACATGACGTATAACAAC
* * * *
33810526 TAAATTTTCAACATAACGTGTAACAAT-TATTTTCAACATGACGTATAAAAATTAAATTTTAGAA
1 TAAATTTTCAACATAGCGTGTAACAATAAATTTTCAACATGACGTATAATAACTAAATTTTA-AA
*
33810590 CATGACATATAAC-AC
65 CATGACGTATAACAAC
*
33810605 TACATTTTTCAAC
1 TA-AATTTTCAAC
33810618 CTGGATGCTA
Statistics
Matches: 273, Mismatches: 56, Indels: 24
0.77 0.16 0.07
Matches are distributed among these distances:
79 26 0.10
80 27 0.10
81 22 0.08
82 108 0.40
83 21 0.08
84 68 0.25
85 1 0.00
ACGTcount: A:0.43, C:0.15, G:0.08, T:0.34
Consensus pattern (80 bp):
TAAATTTTCAACATAGCGTGTAACAATAAATTTTCAACATGACGTATAATAACTAAATTTTAAAC
ATGACGTATAACAAC
Found at i:33810468 original size:109 final size:109
Alignment explanation
Indices: 33810312--33810539 Score: 296
Period size: 109 Copynumber: 2.1 Consensus size: 109
33810302 TAATTTACAT
* * *
33810312 TTTTCAACATGACATATAATAACTAAATCTTCAACATAATGTGTAACAACTA-AGTTTTTCAAAA
1 TTTTCAACATGACATATAATAACTAAATCTTCAACATAACGTATAACAACTACA-TATTTCAAAA
* *
33810376 TAGCATGTAATAACTAAATTTTAAACATGGCGTATAATAACTAAA
65 TAGCATGTAATAACTAAATTTTAAACATGACGTATAACAACTAAA
* * * ** * **
33810421 TTTTAAACATGGCGTATAATAACTAAATCTTCAACATGGCGTATAACAAGTACATATTTCAACTT
1 TTTTCAACATGACATATAATAACTAAATCTTCAACATAACGTATAACAACTACATATTTCAAAAT
** *
33810486 AGTGTGTAATAACTAAATTTTTAACATGACGTATAACAACTAAA
66 AGCATGTAATAACTAAATTTTAAACATGACGTATAACAACTAAA
33810530 TTTTCAACAT
1 TTTTCAACAT
33810540 AACGTGTAAC
Statistics
Matches: 101, Mismatches: 17, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
109 100 0.99
110 1 0.01
ACGTcount: A:0.43, C:0.14, G:0.09, T:0.34
Consensus pattern (109 bp):
TTTTCAACATGACATATAATAACTAAATCTTCAACATAACGTATAACAACTACATATTTCAAAAT
AGCATGTAATAACTAAATTTTAAACATGACGTATAACAACTAAA
Found at i:33810557 original size:25 final size:25
Alignment explanation
Indices: 33810502--33810603 Score: 96
Period size: 27 Copynumber: 3.9 Consensus size: 25
33810492 TAATAACTAA
* *
33810502 ATTTTTAACATGACGTATAACAACTAA
1 ATTTTCAACATGACGTATAACAA-T-T
* *
33810529 ATTTTCAACATAACGTGTAACAATT
1 ATTTTCAACATGACGTATAACAATT
*
33810554 ATTTTCAACATGACGTATAAAAATT
1 ATTTTCAACATGACGTATAACAATT
* *
33810579 AAATTTTAGAACATGACATATAACA
1 --ATTTT-CAACATGACGTATAACA
33810604 CTACATTTTT
Statistics
Matches: 62, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
25 22 0.35
26 1 0.02
27 25 0.40
28 14 0.23
ACGTcount: A:0.45, C:0.14, G:0.08, T:0.33
Consensus pattern (25 bp):
ATTTTCAACATGACGTATAACAATT
Found at i:33815260 original size:15 final size:15
Alignment explanation
Indices: 33815242--33815271 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
33815232 TTGGTGATGC
33815242 TGATGAGGAGGACAA
1 TGATGAGGAGGACAA
*
33815257 TGATGATGAGGACAA
1 TGATGAGGAGGACAA
33815272 GGTTGAGACA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.07, G:0.37, T:0.17
Consensus pattern (15 bp):
TGATGAGGAGGACAA
Found at i:33832789 original size:14 final size:14
Alignment explanation
Indices: 33832772--33832800 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
33832762 TTGCTTGTTG
33832772 CTGATGTTTTGTAA
1 CTGATGTTTTGTAA
33832786 CTGATGTTTTGTAA
1 CTGATGTTTTGTAA
33832800 C
1 C
33832801 GGTTGGTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.10, G:0.21, T:0.48
Consensus pattern (14 bp):
CTGATGTTTTGTAA
Found at i:33837067 original size:27 final size:27
Alignment explanation
Indices: 33837034--33837089 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
33837024 AGATTTACAG
*
33837034 TTACTTTTTTCTTTGTGGCGCCTTTAT
1 TTACTTTCTTCTTTGTGGCGCCTTTAT
*
33837061 TTACTTTCTTCTTTGTGGTGCCTTTAT
1 TTACTTTCTTCTTTGTGGCGCCTTTAT
33837088 TT
1 TT
33837090 TCATATGAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.07, C:0.18, G:0.14, T:0.61
Consensus pattern (27 bp):
TTACTTTCTTCTTTGTGGCGCCTTTAT
Found at i:33856595 original size:51 final size:51
Alignment explanation
Indices: 33856452--33856638 Score: 189
Period size: 51 Copynumber: 3.6 Consensus size: 51
33856442 CACGAACTTG
* * *
33856452 GACTTAGTCTTGATCACG-A-ACTTGATATCTTCGCTTCAAGGGTCTTCAT
1 GACTTAATCTTGATCACGAACACTTGATATCTTCGCTTCAAGGGTTTTCAC
* * ** * * ***
33856501 GACTTGATTTTGATTGCAAACTATATTTGATATCTTTATTTCAAGGGTTTTCAC
1 GACTTAATCTTGATCACGAAC---ACTTGATATCTTCGCTTCAAGGGTTTTCAC
* *
33856555 GACTCAATCTTGATCACGAACACTTGATATCTTCGCTTCAAGTGTTTTCAC
1 GACTTAATCTTGATCACGAACACTTGATATCTTCGCTTCAAGGGTTTTCAC
* *
33856606 GATTTAATCTTGATCACGAACATTTGATATCTT
1 GACTTAATCTTGATCACGAACACTTGATATCTT
33856639 GATCACAAAC
Statistics
Matches: 107, Mismatches: 26, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
49 12 0.11
50 1 0.01
51 55 0.51
54 39 0.36
ACGTcount: A:0.26, C:0.19, G:0.15, T:0.40
Consensus pattern (51 bp):
GACTTAATCTTGATCACGAACACTTGATATCTTCGCTTCAAGGGTTTTCAC
Found at i:33856686 original size:23 final size:23
Alignment explanation
Indices: 33856636--33856687 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 23
33856626 CATTTGATAT
*
33856636 CTTGATCACAAACTTCGCTACCG
1 CTTGATCACAAACTTCACTACCG
* * * *
33856659 TTTGATCACGAATTTCACTATCG
1 CTTGATCACAAACTTCACTACCG
33856682 CTTGAT
1 CTTGAT
33856688 ATCTTCACTT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.25, C:0.27, G:0.13, T:0.35
Consensus pattern (23 bp):
CTTGATCACAAACTTCACTACCG
Found at i:33856757 original size:18 final size:18
Alignment explanation
Indices: 33856736--33856770 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
33856726 GAAATGCTCT
33856736 GAATCTTGGAATACCTTC
1 GAATCTTGGAATACCTTC
*
33856754 GAATCTTTGAATACCTT
1 GAATCTTGGAATACCTT
33856771 TGAAAGAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (18 bp):
GAATCTTGGAATACCTTC
Found at i:33858312 original size:54 final size:54
Alignment explanation
Indices: 33858248--33858411 Score: 292
Period size: 54 Copynumber: 3.0 Consensus size: 54
33858238 GAATTTTAAT
* *
33858248 TGGTGTCTTTGAAATAATTCAACCAATAAATTAATTATTTTATTATTAATTATA
1 TGGTGTCTTTGAAATAATACAACCAATAAATTAATTATTTTATAATTAATTATA
*
33858302 TGGTGTCTTTGAAATAATACCACCAATAAATTAATTATTTTATAATTAATTATA
1 TGGTGTCTTTGAAATAATACAACCAATAAATTAATTATTTTATAATTAATTATA
*
33858356 TGGTGTCTTTGAAATAATCCAACCAATAAATTAATTATTTTATAATTAATTATA
1 TGGTGTCTTTGAAATAATACAACCAATAAATTAATTATTTTATAATTAATTATA
33858410 TG
1 TG
33858412 ATTATCTTTA
Statistics
Matches: 105, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 105 1.00
ACGTcount: A:0.40, C:0.09, G:0.08, T:0.44
Consensus pattern (54 bp):
TGGTGTCTTTGAAATAATACAACCAATAAATTAATTATTTTATAATTAATTATA
Found at i:33859267 original size:35 final size:35
Alignment explanation
Indices: 33859147--33859269 Score: 138
Period size: 35 Copynumber: 3.5 Consensus size: 35
33859137 TAACCATTAC
* * * *
33859147 AAGTGAAGCACTACTTCACGCAGAATAATTAAAAC
1 AAGTGAAGTACTACTCCACGCAGAATAATTAGAAT
* * * * *
33859182 AAATGAAGTACTACTTCATGTAAAATAATTAGAAT
1 AAGTGAAGTACTACTCCACGCAGAATAATTAGAAT
* *
33859217 AAGTGAAATACTACTCCACGCAGAACAATTAGAAT
1 AAGTGAAGTACTACTCCACGCAGAATAATTAGAAT
*
33859252 AAGTGTAGTACTACTCCA
1 AAGTGAAGTACTACTCCA
33859270 TGTGGAACAA
Statistics
Matches: 72, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
35 72 1.00
ACGTcount: A:0.45, C:0.17, G:0.14, T:0.24
Consensus pattern (35 bp):
AAGTGAAGTACTACTCCACGCAGAATAATTAGAAT
Found at i:33859282 original size:70 final size:70
Alignment explanation
Indices: 33859147--33859282 Score: 164
Period size: 70 Copynumber: 1.9 Consensus size: 70
33859137 TAACCATTAC
* * * * *
33859147 AAGTGAAGCACTACTTCACGCAGAATAATTAAAACAAATGAAGTACTACTTCATGTAAAATAATT
1 AAGTGAAACACTACTCCACGCAGAACAATTAAAACAAATGAAGTACTACTCCATGTAAAACAATT
33859212 AGAAT
66 AGAAT
* * * * * **
33859217 AAGTGAAATACTACTCCACGCAGAACAATTAGAATAAGTGTAGTACTACTCCATGTGGAACAATT
1 AAGTGAAACACTACTCCACGCAGAACAATTAAAACAAATGAAGTACTACTCCATGTAAAACAATT
33859282 A
66 A
33859283 ATATTATTAG
Statistics
Matches: 54, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
70 54 1.00
ACGTcount: A:0.44, C:0.16, G:0.15, T:0.25
Consensus pattern (70 bp):
AAGTGAAACACTACTCCACGCAGAACAATTAAAACAAATGAAGTACTACTCCATGTAAAACAATT
AGAAT
Found at i:33859524 original size:29 final size:29
Alignment explanation
Indices: 33859480--33859573 Score: 84
Period size: 29 Copynumber: 3.3 Consensus size: 29
33859470 TATTCTTGTA
* *
33859480 TACCTGTTCACATACACCTTCTTCTCTTG
1 TACCTTTTCACGTACACCTTCTTCTCTTG
* * ** * *
33859509 TACTTTTTCATGTACAGTTTCTTTTTTTG
1 TACCTTTTCACGTACACCTTCTTCTCTTG
*
33859538 TACCTTTTCACGTATACCTT-TTCTCTAT-
1 TACCTTTTCACGTACACCTTCTTCTCT-TG
33859566 TACCTTTT
1 TACCTTTT
33859574 ATTCGAGAAG
Statistics
Matches: 49, Mismatches: 15, Indels: 3
0.73 0.22 0.04
Matches are distributed among these distances:
28 12 0.24
29 37 0.76
ACGTcount: A:0.16, C:0.26, G:0.06, T:0.52
Consensus pattern (29 bp):
TACCTTTTCACGTACACCTTCTTCTCTTG
Found at i:33862778 original size:41 final size:40
Alignment explanation
Indices: 33862705--33862855 Score: 159
Period size: 41 Copynumber: 3.9 Consensus size: 40
33862695 ATTGTTGATC
33862705 TTATAATAGCAT--AATTGTTGATCCTTAAAGGGTGCTCT
1 TTATAATAGCATACAATTGTTGATCCTTAAAGGGTGCTCT
** * *
33862743 TTATAATAGCATACAATATGTTGATCCTTGGAGGGTGTTTT
1 TTATAATAGCATACAAT-TGTTGATCCTTAAAGGGTGCTCT
* * *
33862784 TTTTAATAGCATACAATTATTGATCCTTAAA-GATGCTCT
1 TTATAATAGCATACAATTGTTGATCCTTAAAGGGTGCTCT
* * * *
33862823 CTATAATAG--TACCATTGTTGATTCTTGAAGGGT
1 TTATAATAGCATACAATTGTTGATCCTTAAAGGGT
33862856 TGTTGATCCT
Statistics
Matches: 91, Mismatches: 18, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
37 16 0.18
38 14 0.15
39 12 0.13
40 14 0.15
41 35 0.38
ACGTcount: A:0.29, C:0.13, G:0.18, T:0.40
Consensus pattern (40 bp):
TTATAATAGCATACAATTGTTGATCCTTAAAGGGTGCTCT
Found at i:33862871 original size:18 final size:18
Alignment explanation
Indices: 33862837--33862871 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
33862827 AATAGTACCA
* *
33862837 TTGTTGATTCTTGAAGGG
1 TTGTTGATCCTTAAAGGG
33862855 TTGTTGATCCTTAAAGG
1 TTGTTGATCCTTAAAGG
33862872 TGCTTTTAGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.09, G:0.29, T:0.43
Consensus pattern (18 bp):
TTGTTGATCCTTAAAGGG
Found at i:33886953 original size:16 final size:15
Alignment explanation
Indices: 33886919--33886956 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
33886909 AGTATATATA
33886919 TTATAATTAATAATT
1 TTATAATTAATAATT
33886934 TTATAAGTT-ATAATTT
1 TTATAA-TTAATAA-TT
33886950 TTATAAT
1 TTATAAT
33886957 ATTAACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
15 11 0.52
16 10 0.48
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (15 bp):
TTATAATTAATAATT
Found at i:33887796 original size:53 final size:55
Alignment explanation
Indices: 33887728--33887832 Score: 133
Period size: 56 Copynumber: 1.9 Consensus size: 55
33887718 AATATTATAT
* * * *
33887728 AGCTATTAATGAAAAATCAT-AA-TGTCCATTCCCTAAAGTGAATGTGACAAACG
1 AGCTACTAATAAAAAATCATAAATTGTCAATTCCCTAAAGTGAATGCGACAAACG
* *
33887781 AGCTACTAATAAAAAATTATAAATTTGTTAATTCCCTAAAGTGAATGCGACA
1 AGCTACTAATAAAAAATCATAAA-TTGTCAATTCCCTAAAGTGAATGCGACA
33887833 TCATTTAATA
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
53 17 0.40
54 2 0.05
56 24 0.56
ACGTcount: A:0.43, C:0.15, G:0.13, T:0.29
Consensus pattern (55 bp):
AGCTACTAATAAAAAATCATAAATTGTCAATTCCCTAAAGTGAATGCGACAAACG
Found at i:33891890 original size:19 final size:19
Alignment explanation
Indices: 33891866--33891903 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
33891856 CCATTTAACT
*
33891866 TATTGGAGTATGATTTGAG
1 TATTGGAGTATAATTTGAG
33891885 TATTGGAGTATAATTTGAG
1 TATTGGAGTATAATTTGAG
33891904 GGTTTGGCAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.42
Consensus pattern (19 bp):
TATTGGAGTATAATTTGAG
Found at i:33895497 original size:42 final size:43
Alignment explanation
Indices: 33895448--33895556 Score: 112
Period size: 45 Copynumber: 2.5 Consensus size: 43
33895438 ATAAAAATAT
* * *
33895448 TTAAATATTATTTCACTATAATAAATATTATAAAGCATATTAC
1 TTAAATATTATTTCAATATAATAAATATAATAAAGAATATTAC
* *
33895491 TTAATATTATTATTTGAATATAATAAATGTAATAAAGAATATTA-
1 TTAA-A-TATTATTTCAATATAATAAATATAATAAAGAATATTAC
* * * *
33895535 TTTAGTATTATTTAAATTTAAT
1 TTAAATATTATTTCAATATAAT
33895557 GAAGAATATA
Statistics
Matches: 55, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
42 15 0.27
43 4 0.07
44 4 0.07
45 32 0.58
ACGTcount: A:0.46, C:0.04, G:0.05, T:0.46
Consensus pattern (43 bp):
TTAAATATTATTTCAATATAATAAATATAATAAAGAATATTAC
Found at i:33895513 original size:45 final size:45
Alignment explanation
Indices: 33895453--33895546 Score: 125
Period size: 45 Copynumber: 2.1 Consensus size: 45
33895443 AATATTTAAA
* * *
33895453 TATTATTTCACTATAATAAATATTATAAAGCATATTACTTAATAT
1 TATTATTTCAATATAATAAATATAATAAAGAATATTACTTAATAT
* * * *
33895498 TATTATTTGAATATAATAAATGTAATAAAGAATATTATTTAGTAT
1 TATTATTTCAATATAATAAATATAATAAAGAATATTACTTAATAT
33895543 TATT
1 TATT
33895547 TAAATTTAAT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.45, C:0.04, G:0.05, T:0.46
Consensus pattern (45 bp):
TATTATTTCAATATAATAAATATAATAAAGAATATTACTTAATAT
Found at i:33895657 original size:22 final size:22
Alignment explanation
Indices: 33895584--33895697 Score: 70
Period size: 22 Copynumber: 5.1 Consensus size: 22
33895574 TTTTAATATT
*
33895584 AAATATTATTTAATTATAATAA
1 AAATATTATTAAATTATAATAA
* ** *
33895606 AAGGT-TTAATTATCTTCTAATACA
1 AA-ATATT-ATTAAATTATAATA-A
33895630 AAATATTATTAAATTATAATAA
1 AAATATTATTAAATTATAATAA
** * **
33895652 AAATATGT-TTGTATTTTGGTAA
1 AAATAT-TATTAAATTATAATAA
* *
33895674 AAATATTATTTAATTATAGTAA
1 AAATATTATTAAATTATAATAA
33895696 AA
1 AA
33895698 GTTATTTTGA
Statistics
Matches: 68, Mismatches: 18, Indels: 12
0.69 0.18 0.12
Matches are distributed among these distances:
21 1 0.01
22 38 0.56
23 24 0.35
24 5 0.07
ACGTcount: A:0.47, C:0.03, G:0.06, T:0.44
Consensus pattern (22 bp):
AAATATTATTAAATTATAATAA
Found at i:33903655 original size:80 final size:81
Alignment explanation
Indices: 33903554--33903711 Score: 257
Period size: 80 Copynumber: 2.0 Consensus size: 81
33903544 AAATTTCATG
* *
33903554 TCCCCTTTTCCCGACTTAATTCATCTGTTCATTTTTCTATTCTTCTGGCACATTTACTTTACGA-
1 TCCCCTTTTCCCGACTTAATTCATCTGTTCACTTTTCTACTCTTCTGGCACATTTACTTTAC-AT
33903618 AATAAAATAAAATGGAA
65 AATAAAATAAAATGGAA
*
33903635 TCCCC-TTTCCCGACTTAATTCATTTGTTCACTTTTCTACTCTTCTGGCACATTTACTTTACATA
1 TCCCCTTTTCCCGACTTAATTCATCTGTTCACTTTTCTACTCTTCTGGCACATTTACTTTACATA
*
33903699 ATAAAATAGAATG
66 ATAAAATAAAATG
33903712 AAACAGAATA
Statistics
Matches: 72, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
79 1 0.01
80 66 0.92
81 5 0.07
ACGTcount: A:0.27, C:0.23, G:0.08, T:0.41
Consensus pattern (81 bp):
TCCCCTTTTCCCGACTTAATTCATCTGTTCACTTTTCTACTCTTCTGGCACATTTACTTTACATA
ATAAAATAAAATGGAA
Found at i:33903756 original size:16 final size:16
Alignment explanation
Indices: 33903735--33903765 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
33903725 ATTATGTAAT
*
33903735 AATAGAATAAAATATA
1 AATAGAAAAAAATATA
33903751 AATAGAAAAAAATAT
1 AATAGAAAAAAATAT
33903766 TATTATTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.23
Consensus pattern (16 bp):
AATAGAAAAAAATATA
Found at i:33903909 original size:13 final size:13
Alignment explanation
Indices: 33903893--33903917 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33903883 TATATAATTA
33903893 TTTATTTTTTTAT
1 TTTATTTTTTTAT
33903906 TTTATTTTTTTA
1 TTTATTTTTTTA
33903918 ATATTAATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (13 bp):
TTTATTTTTTTAT
Found at i:33904407 original size:17 final size:17
Alignment explanation
Indices: 33904374--33904407 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
33904364 AATATTTTAT
* *
33904374 TTATAATTTAAACATTA
1 TTATAATTAAAAAATTA
33904391 TTATAATTAAAAAATTA
1 TTATAATTAAAAAATTA
33904408 AAAAATTTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (17 bp):
TTATAATTAAAAAATTA
Found at i:33905748 original size:18 final size:18
Alignment explanation
Indices: 33905721--33905760 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
33905711 AATCGTTAAT
**
33905721 TTATGAGTTATTTATGAA
1 TTATGAGTTACCTATGAA
*
33905739 TTATGTGTTACCTATGAA
1 TTATGAGTTACCTATGAA
33905757 TTAT
1 TTAT
33905761 TTGTGAAACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.30, C:0.05, G:0.15, T:0.50
Consensus pattern (18 bp):
TTATGAGTTACCTATGAA
Found at i:33915614 original size:13 final size:14
Alignment explanation
Indices: 33915596--33915631 Score: 58
Period size: 13 Copynumber: 2.7 Consensus size: 14
33915586 TAAGCTCAAG
33915596 TTATTAAT-TTAAC
1 TTATTAATATTAAC
33915609 TTATT-ATATTAAC
1 TTATTAATATTAAC
33915622 TTATTAATAT
1 TTATTAATAT
33915632 ATTATTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 2 0.10
13 15 0.71
14 4 0.19
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.56
Consensus pattern (14 bp):
TTATTAATATTAAC
Found at i:33915680 original size:27 final size:26
Alignment explanation
Indices: 33915622--33915701 Score: 72
Period size: 27 Copynumber: 3.0 Consensus size: 26
33915612 TTATATTAAC
** * *
33915622 TTATTAATATATTATTTTTTATTTAAG
1 TTATTAATATATTATACTATATAT-AG
33915649 TTATTAATATATTATACTATATATAG
1 TTATTAATATATTATACTATATATAG
* * *
33915675 TATATTTAT-TAATATACAATATATAG
1 T-TATTAATATATTATACTATATATAG
33915701 T
1 T
33915702 CTATGTTATA
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
26 19 0.42
27 26 0.58
ACGTcount: A:0.40, C:0.03, G:0.04, T:0.54
Consensus pattern (26 bp):
TTATTAATATATTATACTATATATAG
Found at i:33915797 original size:18 final size:17
Alignment explanation
Indices: 33915756--33915806 Score: 59
Period size: 20 Copynumber: 2.8 Consensus size: 17
33915746 ATTATTAATA
33915756 AACTATATTAATATAGTAT
1 AACT-TATTAATATAG-AT
33915775 AACTTACATTAATATAG-T
1 AACTT--ATTAATATAGAT
33915793 AACTTATTAATATA
1 AACTTATTAATATA
33915807 CTATATATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
16 9 0.30
18 7 0.23
19 4 0.13
20 10 0.33
ACGTcount: A:0.47, C:0.08, G:0.04, T:0.41
Consensus pattern (17 bp):
AACTTATTAATATAGAT
Found at i:33915813 original size:23 final size:21
Alignment explanation
Indices: 33915786--33915830 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 21
33915776 ACTTACATTA
33915786 ATATAGTAACTTATTAATATACT
1 ATATAGTAA--TATTAATATACT
* *
33915809 ATATATTAATATTAGTATACT
1 ATATAGTAATATTAATATACT
33915830 A
1 A
33915831 CAGCAATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 12 0.60
23 8 0.40
ACGTcount: A:0.44, C:0.07, G:0.04, T:0.44
Consensus pattern (21 bp):
ATATAGTAATATTAATATACT
Found at i:33915848 original size:34 final size:31
Alignment explanation
Indices: 33915772--33915850 Score: 79
Period size: 34 Copynumber: 2.5 Consensus size: 31
33915762 ATTAATATAG
* * **
33915772 TATAACTTACATTAATATAGTAACTTATTAA
1 TATAACTTATATTAATATAGTAACTCAGCAA
33915803 TAT-ACTATATATTAATATTAGTATACTACAGCAA
1 TATAACT-TATATTAATA-TAGTA-ACT-CAGCAA
33915837 TATAACTTATATTA
1 TATAACTTATATTA
33915851 GCAACTAAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
30 3 0.08
31 12 0.31
32 5 0.13
33 3 0.08
34 13 0.33
35 3 0.08
ACGTcount: A:0.44, C:0.10, G:0.04, T:0.42
Consensus pattern (31 bp):
TATAACTTATATTAATATAGTAACTCAGCAA
Found at i:33916113 original size:20 final size:20
Alignment explanation
Indices: 33916088--33916126 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
33916078 TAATTACTCA
*
33916088 ATAACAATTTACTATTATAT
1 ATAACAATATACTATTATAT
33916108 ATAACAATATACTATTATA
1 ATAACAATATACTATTATA
33916127 GAGTACATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (20 bp):
ATAACAATATACTATTATAT
Found at i:33916189 original size:19 final size:21
Alignment explanation
Indices: 33916165--33916205 Score: 68
Period size: 19 Copynumber: 2.0 Consensus size: 21
33916155 ATACTTATAT
33916165 ACTATATA-AGTAA-ATATTA
1 ACTATATATAGTAATATATTA
33916184 ACTATATATAGTAATATATTA
1 ACTATATATAGTAATATATTA
33916205 A
1 A
33916206 TACACAATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 8 0.40
20 5 0.25
21 7 0.35
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.39
Consensus pattern (21 bp):
ACTATATATAGTAATATATTA
Found at i:33916338 original size:31 final size:30
Alignment explanation
Indices: 33916234--33916346 Score: 88
Period size: 31 Copynumber: 3.7 Consensus size: 30
33916224 AGTATATAGT
* *
33916234 TATACACTATATATAATTTATATCA-ATACAA
1 TATACA-T-TATATAATATATATTATATACAA
* *
33916265 TATACA-TATATACTATATACTATATA-AA
1 TATACATTATATAATATATATTATATACAA
* * * *
33916293 GTAAATATTAATATAGTATATATTATTTACAA
1 -TATACATT-ATATAATATATATTATATACAA
33916325 TTATACATTATATAATATATAT
1 -TATACATTATATAATATATAT
33916347 CTTAATACAC
Statistics
Matches: 64, Mismatches: 13, Indels: 10
0.74 0.15 0.11
Matches are distributed among these distances:
28 14 0.22
29 7 0.11
30 1 0.02
31 34 0.53
32 8 0.12
ACGTcount: A:0.48, C:0.08, G:0.02, T:0.42
Consensus pattern (30 bp):
TATACATTATATAATATATATTATATACAA
Found at i:33925659 original size:24 final size:24
Alignment explanation
Indices: 33925627--33925682 Score: 112
Period size: 24 Copynumber: 2.3 Consensus size: 24
33925617 GGAAGGCACT
33925627 GATCGAGAAGCAGACTAAGAAAAG
1 GATCGAGAAGCAGACTAAGAAAAG
33925651 GATCGAGAAGCAGACTAAGAAAAG
1 GATCGAGAAGCAGACTAAGAAAAG
33925675 GATCGAGA
1 GATCGAGA
33925683 GCTTTCAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.48, C:0.12, G:0.30, T:0.09
Consensus pattern (24 bp):
GATCGAGAAGCAGACTAAGAAAAG
Found at i:33932160 original size:3 final size:3
Alignment explanation
Indices: 33932152--33932202 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
33932142 AATTGTTCAC
33932152 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
33932200 TAT
1 TAT
33932203 CATCGTCAAA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:33933045 original size:3 final size:3
Alignment explanation
Indices: 33933037--33933070 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
33933027 GGAAACATGT
*
33933037 GTA GTA GTA GTA GTA GTA GTA GTA GTC GTA GTA G
1 GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA G
33933071 AGGAAGCAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.29, C:0.03, G:0.35, T:0.32
Consensus pattern (3 bp):
GTA
Found at i:33939895 original size:29 final size:29
Alignment explanation
Indices: 33939853--33939912 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
33939843 AACGTTATCC
33939853 AATAGGAGAGGCTCAGATGATCAAAGCGA
1 AATAGGAGAGGCTCAGATGATCAAAGCGA
33939882 AATAGGAGAGGCTCAGATGATCAAAGCGA
1 AATAGGAGAGGCTCAGATGATCAAAGCGA
33939911 AA
1 AA
33939913 AGCCCGATCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.43, C:0.13, G:0.30, T:0.13
Consensus pattern (29 bp):
AATAGGAGAGGCTCAGATGATCAAAGCGA
Found at i:33945026 original size:19 final size:19
Alignment explanation
Indices: 33945004--33945041 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
33944994 AATGATGCTT
33945004 GATAAAATTCAAGATGTAC
1 GATAAAATTCAAGATGTAC
33945023 GATAAAATTCAAGATGTAC
1 GATAAAATTCAAGATGTAC
33945042 AACAAGTACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.11, G:0.16, T:0.26
Consensus pattern (19 bp):
GATAAAATTCAAGATGTAC
Found at i:33945211 original size:26 final size:27
Alignment explanation
Indices: 33945174--33945234 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
33945164 GATGGGTTAG
33945174 AAATT-TTCATCC-CTTTTAGTAGGTA
1 AAATTATTCATCCACTTTTAGTAGGTA
33945199 AAATTATTCATCCACTTTTAGTAGGTA
1 AAATTATTCATCCACTTTTAGTAGGTA
33945226 AAATGTATT
1 AAAT-TATT
33945235 ATTAGAATTA
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
25 5 0.15
26 7 0.21
27 17 0.52
28 4 0.12
ACGTcount: A:0.33, C:0.13, G:0.11, T:0.43
Consensus pattern (27 bp):
AAATTATTCATCCACTTTTAGTAGGTA
Found at i:33945411 original size:69 final size:69
Alignment explanation
Indices: 33945304--33945436 Score: 214
Period size: 69 Copynumber: 1.9 Consensus size: 69
33945294 TATAATTGTT
* * *
33945304 AAATGATTTCACATTCACTTCAAGAAATGGAAAGATTCATGATTTTTTATTAGTAGCTTGTTTGA
1 AAATAATTTCACATTCACTTCAAGAAATAGAAAGATTCATGATTTTTTATTAGCAGCTTGTTTGA
33945369 TATA
66 TATA
*
33945373 AAATAATTTCGCATTCACTTCAAGAAATAGACAA-ATTCATGATTTTTTATTAGCAGCTTGTTTG
1 AAATAATTTCACATTCACTTCAAGAAATAGA-AAGATTCATGATTTTTTATTAGCAGCTTGTTTG
33945437 TCGCATTCAT
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
69 57 0.97
70 2 0.03
ACGTcount: A:0.35, C:0.12, G:0.14, T:0.40
Consensus pattern (69 bp):
AAATAATTTCACATTCACTTCAAGAAATAGAAAGATTCATGATTTTTTATTAGCAGCTTGTTTGA
TATA
Found at i:33946347 original size:39 final size:39
Alignment explanation
Indices: 33946293--33946392 Score: 119
Period size: 39 Copynumber: 2.6 Consensus size: 39
33946283 TAATATCCTT
* * * *
33946293 ATGTGCACTCCCACACTGCACATGGCATATATCATCATC
1 ATGTGCTCTCTCACACAGCACATGGCATATATCATCAGC
* **
33946332 ATGTGCTCTCTCACACCGTGCATGGCATATATCATCAGC
1 ATGTGCTCTCTCACACAGCACATGGCATATATCATCAGC
* *
33946371 GTGTACTCTCTCACACAGCACA
1 ATGTGCTCTCTCACACAGCACA
33946393 CTACCGGCAC
Statistics
Matches: 50, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
39 50 1.00
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.26
Consensus pattern (39 bp):
ATGTGCTCTCTCACACAGCACATGGCATATATCATCAGC
Found at i:33947537 original size:20 final size:19
Alignment explanation
Indices: 33947512--33947552 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 19
33947502 AGCTTTTCTT
33947512 TTCCTTT-TTCCTTTCTTTCC
1 TTCCTTTCTT-CTTTC-TTCC
33947532 TTCCTTTCTTCTTTCTTCC
1 TTCCTTTCTTCTTTCTTCC
33947551 TT
1 TT
33947553 TCTCTCTCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 12 0.60
21 2 0.10
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (19 bp):
TTCCTTTCTTCTTTCTTCC
Found at i:33947551 original size:15 final size:16
Alignment explanation
Indices: 33947524--33947555 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
33947514 CCTTTTTCCT
33947524 TTCTTTCCTTCCTTTC
1 TTCTTTCCTTCCTTTC
33947540 TTCTTT-CTTCCTTTC
1 TTCTTTCCTTCCTTTC
33947555 T
1 T
33947556 CTCTCCTAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (16 bp):
TTCTTTCCTTCCTTTC
Found at i:33962527 original size:101 final size:100
Alignment explanation
Indices: 33962351--33962624 Score: 381
Period size: 101 Copynumber: 2.7 Consensus size: 100
33962341 TGTATTGTGT
* * * *
33962351 TGATAATGTTGTTGAC-ATATTTTTGGCATTAAAACATTGAATTTGTTACTATTGCCACGGAAAA
1 TGATAATGTTGTT-ACTTTATTTTT-CCTTTAAAACATTGAATTTGTTACTATTGCCACAGAAAA
33962415 TTGCACAACAAGAACAAAGAGGCAAATCGAAGTCATCA
64 TTGCACAACAAGAACAAA-AGGCAAATCGAAGTCATCA
* * * * *
33962453 TGATAATGTTGTTACTTTATTTTTCCTTTAAAAAATTGAATTTGTTACTATTACAACAAAAAAAT
1 TGATAATGTTGTTACTTTATTTTTCCTTTAAAACATTGAATTTGTTACTATTGCCACAGAAAATT
33962518 GCACAACAAGAACAAAAGGCAAATCGAAGTCATCA
66 GCACAACAAGAACAAAAGGCAAATCGAAGTCATCA
* * *
33962553 TGATAAAGTTGTTACTTTATTTTTTTCATTT-AAACATTAAATTTGTTACTATTGCCACAGAAAA
1 TGATAATGTTGTTACTTTA--TTTTTCCTTTAAAACATTGAATTTGTTACTATTGCCACAGAAAA
33962617 TTGCACAA
64 TTGCACAA
33962625 TAGGAATAAA
Statistics
Matches: 152, Mismatches: 17, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
100 37 0.24
101 86 0.57
102 29 0.19
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.34
Consensus pattern (100 bp):
TGATAATGTTGTTACTTTATTTTTCCTTTAAAACATTGAATTTGTTACTATTGCCACAGAAAATT
GCACAACAAGAACAAAAGGCAAATCGAAGTCATCA
Found at i:33963226 original size:31 final size:31
Alignment explanation
Indices: 33963174--33963233 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
33963164 TCCACGAAGC
* *
33963174 CCTTGTATTGTAAAATTTTATTCAATTTAAT
1 CCTTATATTATAAAATTTTATTCAATTTAAT
*
33963205 CCTTATATTATAACATTTTATTCAATTTA
1 CCTTATATTATAAAATTTTATTCAATTTA
33963234 GTTTCTGTAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.33, C:0.12, G:0.03, T:0.52
Consensus pattern (31 bp):
CCTTATATTATAAAATTTTATTCAATTTAAT
Found at i:33966209 original size:13 final size:13
Alignment explanation
Indices: 33966191--33966215 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33966181 ACTTTTTAAT
33966191 CATCTTTCAATAA
1 CATCTTTCAATAA
33966204 CATCTTTCAATA
1 CATCTTTCAATA
33966216 TCTTTTTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.24, G:0.00, T:0.40
Consensus pattern (13 bp):
CATCTTTCAATAA
Found at i:33984779 original size:15 final size:15
Alignment explanation
Indices: 33984746--33984798 Score: 79
Period size: 15 Copynumber: 3.5 Consensus size: 15
33984736 GTTTTATATT
*
33984746 TTATAATATAATGTGA
1 TTATAA-ATAATATGA
*
33984762 TTATAAATAATATAA
1 TTATAAATAATATGA
33984777 TTATAAATAATATGA
1 TTATAAATAATATGA
33984792 TTATAAA
1 TTATAAA
33984799 AAAATAATAT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
15 28 0.82
16 6 0.18
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.42
Consensus pattern (15 bp):
TTATAAATAATATGA
Found at i:33984793 original size:30 final size:30
Alignment explanation
Indices: 33984746--33984850 Score: 88
Period size: 30 Copynumber: 3.4 Consensus size: 30
33984736 GTTTTATATT
* *
33984746 TTATAATATAATGTGATTATAAATAATATAA
1 TTATAATATAATATGATTATAAA-AAAATAA
33984777 TTATAA-ATAATATGATTATAAAAAAATAATA
1 TTATAATATAATATGATTATAAAAAAAT-A-A
* * *
33984808 TTATAGTATTTAATAT-ATAAGTAAAATAATAA
1 TTATA--ATATAATATGATTA-TAAAAAAATAA
*
33984840 TTAAAATATAA
1 TTATAATATAA
33984851 AAAAGATAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 13
0.75 0.09 0.16
Matches are distributed among these distances:
29 4 0.07
30 21 0.34
31 12 0.20
32 5 0.08
33 5 0.08
34 14 0.23
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.39
Consensus pattern (30 bp):
TTATAATATAATATGATTATAAAAAAATAA
Found at i:33985048 original size:33 final size:31
Alignment explanation
Indices: 33985011--33985099 Score: 99
Period size: 32 Copynumber: 2.8 Consensus size: 31
33985001 TTTTAATGTC
33985011 ATATATTTTATTTTTATTTCTTATTATAATCTT
1 ATATATTTTATTTTTATTT-TTATTATAAT-TT
* *
33985044 ATATATTTTA-TTTTATTTTTTAATATTATTT
1 ATATATTTTATTTTTA-TTTTTATTATAATTT
* *
33985075 TTATATTATATATTTTATTTTTATT
1 ATATATTTTAT-TTTTATTTTTATT
33985100 TCTTTTACTT
Statistics
Matches: 48, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
31 10 0.21
32 20 0.42
33 18 0.38
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (31 bp):
ATATATTTTATTTTTATTTTTATTATAATTT
Found at i:33985056 original size:38 final size:38
Alignment explanation
Indices: 33985014--33985211 Score: 107
Period size: 38 Copynumber: 4.9 Consensus size: 38
33985004 TAATGTCATA
* * *
33985014 TATTTTA-TTTTTATTTCTTATTATAATCTTATATATTT
1 TATTTTATTTTTTA-ATATTATTATAATATTATATATTT
* *
33985052 TATTTTATTTTTTAATATTATTTTTATATTATATATTT
1 TATTTTATTTTTTAATATTATTATAATATTATATATTT
* *
33985090 TATTTTTATTTCTTTTACTTATATTA-TATAA-ATTTTAATTTCTT
1 TA-TTTTA-TT-TTTTA---ATATTATTATAATATTAT-ATAT-TT
* * *
33985134 ATATTTTATTTATTTTAATTTCTAATTCTTATATTATATATTT
1 -TATTTTA-TT-TTTTAATAT-T-ATTATAATATTATATATTT
* *
33985177 TATTTTAATATTTTT-ATTTTAATTATAACATTATA
1 TATTTT-AT-TTTTTAATATT-ATTATAATATTATA
33985212 AAATATTTTT
Statistics
Matches: 126, Mismatches: 18, Indels: 30
0.72 0.10 0.17
Matches are distributed among these distances:
38 28 0.22
39 11 0.09
40 15 0.12
41 12 0.10
42 16 0.13
43 11 0.09
44 27 0.21
45 6 0.05
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (38 bp):
TATTTTATTTTTTAATATTATTATAATATTATATATTT
Found at i:33985069 original size:20 final size:19
Alignment explanation
Indices: 33985014--33985100 Score: 72
Period size: 19 Copynumber: 4.5 Consensus size: 19
33985004 TAATGTCATA
33985014 TATTTTATTTT-TAT-TTCT
1 TATTTTATTTTATATATT-T
* *
33985032 TATTATAATCTTATATATTT
1 TATT-TTATTTTATATATTT
* *
33985052 TATTTTATTTTTTA-ATAT
1 TATTTTATTTTATATATTT
*
33985070 TATTTTTATATTATATATTT
1 TA-TTTTATTTTATATATTT
33985090 TATTTTTATTT
1 TA-TTTTATTT
33985101 CTTTTACTTA
Statistics
Matches: 54, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
18 9 0.17
19 22 0.41
20 21 0.39
21 2 0.04
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.71
Consensus pattern (19 bp):
TATTTTATTTTATATATTT
Found at i:33985170 original size:24 final size:24
Alignment explanation
Indices: 33985083--33985156 Score: 76
Period size: 24 Copynumber: 3.0 Consensus size: 24
33985073 TTTTATATTA
* **
33985083 TATATTTTATTTTTATTTCTTTTACT
1 TATATTTTATTTAT-TTTAATTT-CT
* **
33985109 TATATTATATAAATTTTAATTTCT
1 TATATTTTATTTATTTTAATTTCT
33985133 TATATTTTATTTATTTTAATTTCT
1 TATATTTTATTTATTTTAATTTCT
33985157 AATTCTTATA
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
24 23 0.59
25 6 0.15
26 10 0.26
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (24 bp):
TATATTTTATTTATTTTAATTTCT
Found at i:33985184 original size:33 final size:33
Alignment explanation
Indices: 33985011--33985185 Score: 81
Period size: 33 Copynumber: 5.5 Consensus size: 33
33985001 TTTTAATGTC
* * * * *
33985011 ATATATTTTATTTTTATTTCTTATTATAATCTT
1 ATATATTTTATTTTAATTTCTAATTCTTATATT
* * *
33985044 ATATATTTTATTTTATTTTTTAATATTATTTTTATATT
1 ATATATTTTATTTTA--ATTT-CTA--ATTCTTATATT
* *
33985082 ATATATTTTATTTTTATTTCT-TTTACTTATATT
1 ATATATTTTATTTTAATTTCTAATT-CTTATATT
* *
33985115 ATATA---AATTTTAATTTCTTATAT-TT-TA-T
1 ATATATTTTATTTTAATTTCTAAT-TCTTATATT
33985143 -T-TA-TT----TTAATTTCTAATTCTTATATT
1 ATATATTTTATTTTAATTTCTAATTCTTATATT
33985169 ATATATTTTATTTTAAT
1 ATATATTTTATTTTAAT
33985186 ATTTTTATTT
Statistics
Matches: 106, Mismatches: 16, Indels: 40
0.65 0.10 0.25
Matches are distributed among these distances:
23 1 0.01
24 13 0.12
25 2 0.02
26 3 0.03
27 2 0.02
28 3 0.03
29 4 0.04
30 13 0.12
31 1 0.01
32 3 0.03
33 31 0.29
35 4 0.04
36 4 0.04
38 22 0.21
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (33 bp):
ATATATTTTATTTTAATTTCTAATTCTTATATT
Done.