Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36364294
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2168405 characters in sequence are not A, C, G, or T
File 10 of 91
Found at i:2875811 original size:34 final size:34
Alignment explanation
Indices: 2875724--2875817 Score: 109
Period size: 35 Copynumber: 2.7 Consensus size: 34
2875714 TGTCCCTTTC
2875724 AACCTAAAAAATCAGCAGCCAAAACTGCTCATTTT
1 AACCTAAAAAATCA-CAGCCAAAACTGCTCATTTT
* *
2875759 AACCTAAAAAATTAACAGCCAAAGCTGCTCA-TTT
1 AACCTAAAAAA-TCACAGCCAAAACTGCTCATTTT
* **
2875793 CACCTTCAAAATCGACAGCCAAAAC
1 AACCTAAAAAATC-ACAGCCAAAAC
2875818 CTCAAAAACT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
33 1 0.02
34 21 0.42
35 26 0.52
36 2 0.04
ACGTcount: A:0.44, C:0.28, G:0.09, T:0.20
Consensus pattern (34 bp):
AACCTAAAAAATCACAGCCAAAACTGCTCATTTT
Found at i:2875882 original size:92 final size:92
Alignment explanation
Indices: 2875779--2875955 Score: 282
Period size: 92 Copynumber: 1.9 Consensus size: 92
2875769 ATTAACAGCC
* * * * *
2875779 AAAGCTGCTCATTTCACCTTCAAAATCGACAGCCAAAACCTCAAAAACTAGCAGCTAAAGCTGCT
1 AAAGCTACTCATCTCACCCTCAAAATCGACAGCCAAAACCTCAAAAACTAGCAGCCAAAGCTACT
2875844 CCTTTCAGCCTTCAAAAATCAGCTACT
66 CCTTTCAGCCTTCAAAAATCAGCTACT
* *
2875871 AAAGCTACTCATCTCACCCTCAAAATCGACAGCCAAAACCTCAAAAATTAGTAGCCAAAGCTACT
1 AAAGCTACTCATCTCACCCTCAAAATCGACAGCCAAAACCTCAAAAACTAGCAGCCAAAGCTACT
*
2875936 CCTTTTAGCCTTCAAAAATC
66 CCTTTCAGCCTTCAAAAATC
2875956 GACCCTTTCT
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
92 77 1.00
ACGTcount: A:0.37, C:0.31, G:0.10, T:0.23
Consensus pattern (92 bp):
AAAGCTACTCATCTCACCCTCAAAATCGACAGCCAAAACCTCAAAAACTAGCAGCCAAAGCTACT
CCTTTCAGCCTTCAAAAATCAGCTACT
Found at i:2876116 original size:12 final size:12
Alignment explanation
Indices: 2876094--2876126 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
2876084 ACTTTTCTCT
2876094 TCTTTTTCTTTC
1 TCTTTTTCTTTC
2876106 -CTTTCTTCTTTC
1 TCTTT-TTCTTTC
2876118 TCTTTTTCT
1 TCTTTTTCT
2876127 CCCTTGGTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 4 0.21
12 11 0.58
13 4 0.21
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (12 bp):
TCTTTTTCTTTC
Found at i:2876119 original size:27 final size:27
Alignment explanation
Indices: 2876087--2876166 Score: 87
Period size: 27 Copynumber: 3.1 Consensus size: 27
2876077 CCGCTCAACT
*
2876087 TTTCTCTTCTTTTTCTTTCCTTTCTTC
1 TTTCTCTTCTTTTTCTTTCCTTTGTTC
* * *
2876114 -TT-TC-TCTTTTTC-TCCCTTGGTTG
1 TTTCTCTTCTTTTTCTTTCCTTTGTTC
*
2876137 TTTCTCTCCTTTTTCTTTCCTTTGTTC
1 TTTCTCTTCTTTTTCTTTCCTTTGTTC
2876164 TTT
1 TTT
2876167 TGCTTTCCTT
Statistics
Matches: 41, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
23 7 0.17
24 10 0.24
25 4 0.10
26 9 0.22
27 11 0.27
ACGTcount: A:0.00, C:0.28, G:0.05, T:0.68
Consensus pattern (27 bp):
TTTCTCTTCTTTTTCTTTCCTTTGTTC
Found at i:2876164 original size:23 final size:23
Alignment explanation
Indices: 2876088--2876164 Score: 66
Period size: 23 Copynumber: 3.2 Consensus size: 23
2876078 CGCTCAACTT
* *
2876088 TTCTCTTCTTTTTCTTTCCTTTC
1 TTCTCTCCTTTTTCTTTCCTTTG
* *
2876111 TTCTTTCTCTTTTTC-TCCCTTGGTTG
1 TTCTCTC-CTTTTTCTTTCC-T--TTG
2876137 TTTCTCTCCTTTTTCTTTCCTTTG
1 -TTCTCTCCTTTTTCTTTCCTTTG
2876161 TTCT
1 TTCT
2876165 TTTGCTTTCC
Statistics
Matches: 42, Mismatches: 6, Indels: 12
0.70 0.10 0.20
Matches are distributed among these distances:
23 12 0.29
24 11 0.26
26 10 0.24
27 9 0.21
ACGTcount: A:0.00, C:0.29, G:0.05, T:0.66
Consensus pattern (23 bp):
TTCTCTCCTTTTTCTTTCCTTTG
Found at i:2876166 original size:12 final size:11
Alignment explanation
Indices: 2876086--2876166 Score: 56
Period size: 11 Copynumber: 6.7 Consensus size: 11
2876076 ACCGCTCAAC
2876086 TTTTCTCTT-CT
1 TTTTCT-TTCCT
2876097 TTTTCTTTCCT
1 TTTTCTTTCCT
2876108 TTCTTCTTTCTCT
1 TT-TTCTTTC-CT
**
2876121 TTTTCTCCCTTGGT
1 TTTTCT---TTCCT
*
2876135 TGTTTCTCTCCT
1 T-TTTCTTTCCT
2876147 TTTTCTTTCCT
1 TTTTCTTTCCT
2876158 TTGTTCTTT
1 TT-TTCTTT
2876167 TGCTTTCCTT
Statistics
Matches: 56, Mismatches: 6, Indels: 15
0.73 0.08 0.19
Matches are distributed among these distances:
10 2 0.04
11 21 0.38
12 20 0.36
13 4 0.07
14 2 0.04
15 7 0.12
ACGTcount: A:0.00, C:0.27, G:0.05, T:0.68
Consensus pattern (11 bp):
TTTTCTTTCCT
Found at i:2876398 original size:2 final size:2
Alignment explanation
Indices: 2876393--2876426 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
2876383 TCTCTCTCTT
* *
2876393 TA TA TA TA TA TA TA TG TA TA TA TA CA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2876427 CTGCTATTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (2 bp):
TA
Found at i:2877867 original size:24 final size:24
Alignment explanation
Indices: 2877820--2877867 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
2877810 TTCTCCTACT
* * *
2877820 CCTCCTCCTGCTTCTGCTGTTGCC
1 CCTCCTCCTACTTCAGCTGCTGCC
*
2877844 CCTCCTCCTACTTCAGGTGCTGCC
1 CCTCCTCCTACTTCAGCTGCTGCC
2877868 ATTCATGCTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.04, C:0.46, G:0.17, T:0.33
Consensus pattern (24 bp):
CCTCCTCCTACTTCAGCTGCTGCC
Found at i:2878057 original size:24 final size:24
Alignment explanation
Indices: 2878003--2878058 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
2877993 CAGATGCAGT
*
2878003 CAATGCAGTTAGAGATCCAGCAAT
1 CAATGCAGTTAGAGATCCAGCAAG
* * **
2878027 CAGTGCAGTTGGAGATCCAGCGGG
1 CAATGCAGTTAGAGATCCAGCAAG
2878051 CAATGCAG
1 CAATGCAG
2878059 ATGCAGACAC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.30, C:0.21, G:0.30, T:0.18
Consensus pattern (24 bp):
CAATGCAGTTAGAGATCCAGCAAG
Found at i:2879765 original size:22 final size:22
Alignment explanation
Indices: 2879735--2879786 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
2879725 ATTTTACACA
*
2879735 ATTTACATGACAACGTTCATTC
1 ATTTGCATGACAACGTTCATTC
2879757 ATTTGCATGACAACGTTCATTC
1 ATTTGCATGACAACGTTCATTC
2879779 ATTTGCAT
1 ATTTGCAT
2879787 ATGCCAACCC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.38
Consensus pattern (22 bp):
ATTTGCATGACAACGTTCATTC
Found at i:2879964 original size:23 final size:23
Alignment explanation
Indices: 2879911--2879965 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 23
2879901 GAGTATTTGT
* *
2879911 TATGGAGTCACGTGAGTACTAAA
1 TATGGAATCACGTCAGTACTAAA
* * * *
2879934 TTTTGAATCACGTCAGTAGTTAA
1 TATGGAATCACGTCAGTACTAAA
2879957 TATGGAATC
1 TATGGAATC
2879966 GTGTCACTAA
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.33, C:0.13, G:0.22, T:0.33
Consensus pattern (23 bp):
TATGGAATCACGTCAGTACTAAA
Found at i:2880087 original size:70 final size:70
Alignment explanation
Indices: 2879997--2880146 Score: 246
Period size: 70 Copynumber: 2.1 Consensus size: 70
2879987 TCACGTGAGC
* *
2879997 AGTAAATATGGATCGCGTGAACCGTTAAGATTTAGAATCACGTGAGTATTTGATATTGACTCCCG
1 AGTAAATATGAATCGAGTGAACCGTTAAGATTTAGAATCACGTGAGTATTTGATATTGACTCCCG
2880062 TTAGT
66 TTAGT
* * *
2880067 AGTAAATATGAATCGAGTGAACCGTTACGATTTAGAATCGCTTGAGTATTTGATATTGACTCCCG
1 AGTAAATATGAATCGAGTGAACCGTTAAGATTTAGAATCACGTGAGTATTTGATATTGACTCCCG
2880132 TTAGT
66 TTAGT
*
2880137 AATAAATATG
1 AGTAAATATG
2880147 GAGTGGCGTT
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
70 74 1.00
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.33
Consensus pattern (70 bp):
AGTAAATATGAATCGAGTGAACCGTTAAGATTTAGAATCACGTGAGTATTTGATATTGACTCCCG
TTAGT
Found at i:2885852 original size:111 final size:111
Alignment explanation
Indices: 2885565--2885998 Score: 543
Period size: 111 Copynumber: 3.8 Consensus size: 111
2885555 GCAATATATA
* * * * *
2885565 ACAACAGGTCACGTAATAT-TAAAAAACTAATCATGCAAGCCTAAAAAAGTACTGAACAGAAA-C
1 ACAACAGGTCACATAATATAT-AAAAACCAGTCACGCAAGCCTAAAAAACTACTGAACA-AAAGC
* *
2885628 CTCAAAAGAACACATGAATTGCACAAGTCACGTGCCACCACTCTCACAATGCAT
64 CTCAAAAAAACACATGAATTGCACAAGTCACGCGCCACCACTCT--C---GC-T
* * *
2885682 AACAACAGGTCACGTAATATATAAAAACCAGTCACACAAGCCTAAAAAACTATTGAACAAAAGCC
1 -ACAACAGGTCACATAATATATAAAAACCAGTCACGCAAGCCTAAAAAACTACTGAACAAAAGCC
* *
2885747 TCAAAACAATACATGAATTGCACAAGTCACGCGCCACCACTCTCGCT
65 TCAAAAAAACACATGAATTGCACAAGTCACGCGCCACCACTCTCGCT
* * *
2885794 ACAACAGGTTACATAATATATAAAAACCAGTCACGCAAGCCTAAAAAACTATTAAACAAAAGCCT
1 ACAACAGGTCACATAATATATAAAAACCAGTCACGCAAGCCTAAAAAACTACTGAACAAAAGCCT
* *
2885859 CAAAATAACACATGAATTGCACAAGTCACGCACCACCACTCTCGCT
66 CAAAAAAACACATGAATTGCACAAGTCACGCGCCACCACTCTCGCT
* * * *
2885905 ACAATAAG-CA-ATGCAATATATAAACACCAGTCACGCATTGCCTAAAAAACTACTGAACAAAAG
1 ACAACAGGTCACAT--AATATATAAAAACCAGTCACGCA-AGCCTAAAAAACTACTGAACAAAAG
2885968 CCTCAAAAAAACACATGAATTGCACAAGTCA
63 CCTCAAAAAAACACATGAATTGCACAAGTCA
2885999 GTCACACACC
Statistics
Matches: 287, Mismatches: 24, Indels: 16
0.88 0.07 0.05
Matches are distributed among these distances:
109 2 0.01
110 1 0.00
111 132 0.46
112 53 0.18
113 2 0.01
116 1 0.00
117 3 0.01
118 92 0.32
119 1 0.00
ACGTcount: A:0.45, C:0.26, G:0.11, T:0.18
Consensus pattern (111 bp):
ACAACAGGTCACATAATATATAAAAACCAGTCACGCAAGCCTAAAAAACTACTGAACAAAAGCCT
CAAAAAAACACATGAATTGCACAAGTCACGCGCCACCACTCTCGCT
Found at i:2887416 original size:15 final size:15
Alignment explanation
Indices: 2887396--2887427 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
2887386 ATGTTCAACA
2887396 AATATTCAGTCACGT
1 AATATTCAGTCACGT
*
2887411 AATATTCAGTCATGT
1 AATATTCAGTCACGT
2887426 AA
1 AA
2887428 CGCCTGTCAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.34
Consensus pattern (15 bp):
AATATTCAGTCACGT
Found at i:2889876 original size:20 final size:22
Alignment explanation
Indices: 2889821--2889881 Score: 60
Period size: 20 Copynumber: 3.0 Consensus size: 22
2889811 CTCTTTTATT
*
2889821 TATTT-ATTTATTT-TACTTTA
1 TATTTAATTTATTTATAATTTA
2889841 TATTTAATTT-TATTATAATTTA
1 TATTTAATTTAT-TTATAATTTA
*
2889863 -A-TTAATTTATTTATTATTT
1 TATTTAATTTATTTATAATTT
2889882 TTTTAGGTGT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
20 21 0.60
21 8 0.23
22 6 0.17
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (22 bp):
TATTTAATTTATTTATAATTTA
Found at i:2890156 original size:62 final size:62
Alignment explanation
Indices: 2890086--2890569 Score: 612
Period size: 62 Copynumber: 7.9 Consensus size: 62
2890076 AATAAATTCG
* * *
2890086 ATTAAAATTTATAGATTTAATCTAGGCTCGACCTATCTCACAACAGGTTCAATTTAAACAAA
1 ATTAAAATTTCTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAACAAA
* * * * * * *
2890148 ATTGAAATTCCTAAACTAAATTTAGGCTCGACCTATCTCATAATAGGTTCGATTTAAACAAA
1 ATTAAAATTTCTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAACAAA
* * * *
2890210 ATTTAAAATTCCTAGACTTAATCTAGGCTCGTCTTATCTTACAACAGGTTCGATTT-----AA
1 A-TTAAAATTTCTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAACAAA
* * **
2890268 ATT-AAA-TTCTTAGACTTAATCTAGGCTCGACCTTTCTCACAACAGGTTCGATTTAAATATT
1 ATTAAAATTTC-TAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAACAAA
* * *
2890329 GTTAAAATTCCTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTT--A-AAT
1 ATTAAAATTTCTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAACAAA
* * * *
2890388 ATTGAAATTTCTAAACTTAATTTAGGCTCGACCTATCTCATAACAGGTTCGATTTAAACAAA
1 ATTAAAATTTCTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAACAAA
*
2890450 ATTAAAATTTCTAGACTTAATCTAGGCTCGACCTATCTCACAACAAGTTCGATTTAAACAAA
1 ATTAAAATTTCTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAACAAA
* *
2890512 ATTAAAA-TTCTTAGACTTAATTTAGACTCGACCTATCTCACAACAGGTTCGATTTAAA
1 ATTAAAATTTC-TAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAA
2890570 TTCTTTAATG
Statistics
Matches: 364, Mismatches: 45, Indels: 26
0.84 0.10 0.06
Matches are distributed among these distances:
55 2 0.01
56 43 0.12
57 2 0.01
58 3 0.01
59 51 0.14
60 1 0.00
61 6 0.02
62 209 0.57
63 47 0.13
ACGTcount: A:0.36, C:0.19, G:0.11, T:0.34
Consensus pattern (62 bp):
ATTAAAATTTCTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAACAAA
Found at i:2904049 original size:22 final size:20
Alignment explanation
Indices: 2904009--2904053 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 20
2903999 TTCCCTCTCT
* *
2904009 TTTTATTTATTTTACTTTATA
1 TTTTATTTATTATAATTTA-A
2904030 TTTTATTTTATTATAATTTAA
1 TTTTA-TTTATTATAATTTAA
2904051 TTT
1 TTT
2904054 AATTAATTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (20 bp):
TTTTATTTATTATAATTTAA
Found at i:2906924 original size:24 final size:23
Alignment explanation
Indices: 2906892--2906956 Score: 67
Period size: 24 Copynumber: 2.7 Consensus size: 23
2906882 TACACGTTAT
2906892 TATGTTACACGTTATGGACAAAAA
1 TATGTTACACGTTATGG-CAAAAA
* **
2906916 TATGTTACATGACATGTGCAAAAA
1 TATGTTACACGTTATG-GCAAAAA
* *
2906940 CATGTGACACGTTATGG
1 TATGTTACACGTTATGG
2906957 TTAGATTGTT
Statistics
Matches: 32, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
23 1 0.03
24 30 0.94
25 1 0.03
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29
Consensus pattern (23 bp):
TATGTTACACGTTATGGCAAAAA
Found at i:2906977 original size:45 final size:45
Alignment explanation
Indices: 2906918--2907006 Score: 124
Period size: 45 Copynumber: 2.0 Consensus size: 45
2906908 GACAAAAATA
* * * *
2906918 TGTTACATGACATGTGCAAAAACATGTGACACGTTATGGTTAGAT
1 TGTTACATGACATGTACAAAAACATGTAACACGTCATGGATAGAT
* *
2906963 TGTTACATGCCATGTACAGAAACATGTAACACGTCATGGATAGA
1 TGTTACATGACATGTACAAAAACATGTAACACGTCATGGATAGA
2907007 GACATGTGAC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.28
Consensus pattern (45 bp):
TGTTACATGACATGTACAAAAACATGTAACACGTCATGGATAGAT
Found at i:2907077 original size:24 final size:24
Alignment explanation
Indices: 2907040--2907086 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
2907030 GTTGTTACAT
* * *
2907040 GCCATGTACGGAAACATGTGACAC
1 GCCATATACAGAAACATATGACAC
*
2907064 GCCATATACAGAAATATATGACA
1 GCCATATACAGAAACATATGACA
2907087 TACTATGGTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.40, C:0.21, G:0.19, T:0.19
Consensus pattern (24 bp):
GCCATATACAGAAACATATGACAC
Found at i:2907115 original size:69 final size:69
Alignment explanation
Indices: 2906937--2907107 Score: 180
Period size: 69 Copynumber: 2.5 Consensus size: 69
2906927 ACATGTGCAA
* ** * * *
2906937 AAACATGTGACACGTTATGGTTAGATTGTTACATGCCATGTACAGAAACATGTAACACGTCATGG
1 AAACATATGACACACTATGGTTAGGTTGTTACATGCCATGTACAGAAACATGTAACACGCCATAG
*
2907002 ATAG
66 ACAG
* * * * * * * * *
2907006 AGACATGTGACACGCCATAGTTACGTTGTTACATGCCATGTACGGAAACATGTGACACGCCATAT
1 AAACATATGACACACTATGGTTAGGTTGTTACATGCCATGTACAGAAACATGTAACACGCCATAG
2907071 ACAG
66 ACAG
* *
2907075 AAATATATGACATACTATGGTTAGGTTGTTACA
1 AAACATATGACACACTATGGTTAGGTTGTTACA
2907108 CGTCATGTTG
Statistics
Matches: 82, Mismatches: 20, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
69 82 1.00
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (69 bp):
AAACATATGACACACTATGGTTAGGTTGTTACATGCCATGTACAGAAACATGTAACACGCCATAG
ACAG
Found at i:2907134 original size:30 final size:29
Alignment explanation
Indices: 2907099--2907264 Score: 107
Period size: 29 Copynumber: 5.8 Consensus size: 29
2907089 CTATGGTTAG
*
2907099 GTTGTTACACGTCATGTTGAAAAAAATACT
1 GTTGTTACACGCCATGTTG-AAAAAATACT
*
2907129 GTTGTTACACGCCATG-T-ACAAAA-AC-
1 GTTGTTACACGCCATGTTGAAAAAATACT
* * *
2907154 -TTATTACACGTCATGATT--AAAAA-A-G
1 GTTGTTACACGCCATG-TTGAAAAAATACT
* * *
2907179 GTTGTTACATGCCATATTGAAAAAAAAAATATT
1 GTTGTTACACGCCATGTTG----AAAAAATACT
*
2907212 GTTGTTACACGCCATGTTGAAAAAATATT
1 GTTGTTACACGCCATGTTGAAAAAATACT
* * *
2907241 ATTGTTACACGCCATATTCAAAAA
1 GTTGTTACACGCCATGTTGAAAAA
2907265 CATTTTGTTA
Statistics
Matches: 109, Mismatches: 15, Indels: 25
0.73 0.10 0.17
Matches are distributed among these distances:
24 13 0.12
25 7 0.06
26 14 0.13
27 5 0.05
29 32 0.29
30 15 0.14
31 5 0.05
32 1 0.01
33 17 0.16
ACGTcount: A:0.40, C:0.15, G:0.14, T:0.31
Consensus pattern (29 bp):
GTTGTTACACGCCATGTTGAAAAAATACT
Found at i:2907226 original size:33 final size:33
Alignment explanation
Indices: 2907179--2907264 Score: 108
Period size: 29 Copynumber: 2.7 Consensus size: 33
2907169 ATTAAAAAAG
*
2907179 GTTGTTACATGCCATATTGAAAAAAAAAATATT
1 GTTGTTACACGCCATATTGAAAAAAAAAATATT
*
2907212 GTTGTTACACGCCATGTTG----AAAAAATATT
1 GTTGTTACACGCCATATTGAAAAAAAAAATATT
* *
2907241 ATTGTTACACGCCATATTCAAAAA
1 GTTGTTACACGCCATATTGAAAAA
2907265 CATTTTGTTA
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
29 26 0.59
33 18 0.41
ACGTcount: A:0.41, C:0.14, G:0.13, T:0.33
Consensus pattern (33 bp):
GTTGTTACACGCCATATTGAAAAAAAAAATATT
Found at i:2907272 original size:27 final size:29
Alignment explanation
Indices: 2907202--2907277 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
2907192 ATATTGAAAA
* *
2907202 AAAAAATATTGTTGTTACACGCCATGTTG
1 AAAAAATATTATTGTTACACGCCATATTG
2907231 AAAAAATATTATTGTTACACGCCATATT-
1 AAAAAATATTATTGTTACACGCCATATTG
* *
2907259 CAAAAACATT-TTGTTACAC
1 AAAAAATATTATTGTTACAC
2907278 TTTAATGTCT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
27 9 0.21
28 8 0.19
29 26 0.60
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.34
Consensus pattern (29 bp):
AAAAAATATTATTGTTACACGCCATATTG
Found at i:2918790 original size:40 final size:40
Alignment explanation
Indices: 2918742--2918817 Score: 125
Period size: 40 Copynumber: 1.9 Consensus size: 40
2918732 TTGGTTATTT
* *
2918742 TTCACCTTAGTGGGGTTTTCAACCTTGCCAAGATTGGTGA
1 TTCACCTTAGTGGAGTTTTCAACCTCGCCAAGATTGGTGA
*
2918782 TTCACCTTAGTGGAGTTTTCAACCTCGCCACGATTG
1 TTCACCTTAGTGGAGTTTTCAACCTCGCCAAGATTG
2918818 ATGTCTTTCA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (40 bp):
TTCACCTTAGTGGAGTTTTCAACCTCGCCAAGATTGGTGA
Found at i:2921466 original size:40 final size:40
Alignment explanation
Indices: 2921410--2921488 Score: 122
Period size: 40 Copynumber: 2.0 Consensus size: 40
2921400 TTAGCTATTT
* *
2921410 TTCACCTTAGTGGGGTTTTCAACCTTGCCAAGATTGGTGA
1 TTCACCTTAGTAGGGTTTTCAACCTCGCCAAGATTGGTGA
* *
2921450 TTCACCTTAGTAGGGTTTTCAACCTCGTCACGATTGGTG
1 TTCACCTTAGTAGGGTTTTCAACCTCGCCAAGATTGGTG
2921489 TCTTTCATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.19, C:0.22, G:0.24, T:0.35
Consensus pattern (40 bp):
TTCACCTTAGTAGGGTTTTCAACCTCGCCAAGATTGGTGA
Found at i:2930618 original size:14 final size:14
Alignment explanation
Indices: 2930601--2930632 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
2930591 CAATAAATGG
*
2930601 AAACCAATAGAAAC
1 AAACCAAGAGAAAC
2930615 AAACCAAGAGAAAC
1 AAACCAAGAGAAAC
2930629 AAAC
1 AAAC
2930633 TAAGTTCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.66, C:0.22, G:0.09, T:0.03
Consensus pattern (14 bp):
AAACCAAGAGAAAC
Found at i:2933651 original size:2 final size:2
Alignment explanation
Indices: 2933644--2933671 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
2933634 ACATTCGTGC
2933644 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2933672 CTTAAGAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2933856 original size:31 final size:32
Alignment explanation
Indices: 2933810--2933871 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 32
2933800 AAATAAAAAA
* * *
2933810 GAAATCAAAATCCTACATC-AGGGTTAAGGGG
1 GAAACCAAAACCCTACATCAAGGGGTAAGGGG
*
2933841 GAAACCAAAACCCTACTTCAAGGGGTAAGGG
1 GAAACCAAAACCCTACATCAAGGGGTAAGGG
2933872 AGTAGAACAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
31 16 0.62
32 10 0.38
ACGTcount: A:0.39, C:0.19, G:0.26, T:0.16
Consensus pattern (32 bp):
GAAACCAAAACCCTACATCAAGGGGTAAGGGG
Found at i:2936581 original size:40 final size:41
Alignment explanation
Indices: 2936498--2936595 Score: 144
Period size: 40 Copynumber: 2.4 Consensus size: 41
2936488 TTTTGATTCG
*
2936498 GACCCAGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCT
1 GACCCGGCTATGTGCGAGTAGGAGTG-ACATAAGCCGTTGCT
* *
2936540 GACCCGGCTATGTGTGAGTGGGAGTG-CATAAGCCGTTGCT
1 GACCCGGCTATGTGCGAGTAGGAGTGACATAAGCCGTTGCT
*
2936580 GACCCGGCTATATGCG
1 GACCCGGCTATGTGCG
2936596 CATAAGCCGT
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
40 28 0.55
42 23 0.45
ACGTcount: A:0.20, C:0.23, G:0.34, T:0.22
Consensus pattern (41 bp):
GACCCGGCTATGTGCGAGTAGGAGTGACATAAGCCGTTGCT
Found at i:2936651 original size:26 final size:26
Alignment explanation
Indices: 2936615--2936667 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2936605 TTGCATATGA
2936615 GATGATGATGATAGGATGGTGTGCAT
1 GATGATGATGATAGGATGGTGTGCAT
*
2936641 GATGATGATGATGGGATGGTGTGCAT
1 GATGATGATGATAGGATGGTGTGCAT
2936667 G
1 G
2936668 TTAATGACGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.04, G:0.42, T:0.30
Consensus pattern (26 bp):
GATGATGATGATAGGATGGTGTGCAT
Found at i:2936674 original size:26 final size:26
Alignment explanation
Indices: 2936619--2936674 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
2936609 ATATGAGATG
*
2936619 ATGATGATAGGATGGTGTGCATGATG
1 ATGATGATAGGATGGTGTGCATGATA
* *
2936645 ATGATGATGGGATGGTGTGCATGTTA
1 ATGATGATAGGATGGTGTGCATGATA
2936671 ATGA
1 ATGA
2936675 CGGGTATATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.04, G:0.38, T:0.32
Consensus pattern (26 bp):
ATGATGATAGGATGGTGTGCATGATA
Found at i:2944007 original size:42 final size:42
Alignment explanation
Indices: 2943941--2944316 Score: 581
Period size: 42 Copynumber: 9.0 Consensus size: 42
2943931 TGTTGATTTG
* *
2943941 GACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGTT
1 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
** * *
2943983 GACTAGACTATGTGCGAGTGGGAGTGCACATAAGCTGTTGCT
1 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
*
2944025 GACCCGGCTATGTGGGAGTGGGAGTGCACATAAGCCGTTGCT
1 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
2944067 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
1 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
* * *
2944109 GACCCGGCTATATGGGAGTGGGAGTGCACATAAGCTGTTGCT
1 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
* * * * **
2944151 CACCCGACTATGTGGGAGTGGGAGTGCATATAAGTTGTTGCT
1 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
* * *
2944193 GACTCGGCTATGTGCGAGTGGGAGTGCGCATAAGCCGTTGTT
1 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
2944235 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
1 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
2944277 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTG
1 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTG
2944317 TTGTGGGAGT
Statistics
Matches: 302, Mismatches: 32, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 302 1.00
ACGTcount: A:0.20, C:0.20, G:0.36, T:0.24
Consensus pattern (42 bp):
GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
Found at i:2944328 original size:25 final size:25
Alignment explanation
Indices: 2944294--2944341 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
2944284 CTATGTGCGA
2944294 GTGGGAGTGCACATAAGCCGTTGTT
1 GTGGGAGTGCACATAAGCCGTTGTT
2944319 GTGGGAGTGCACATAAGCCGTTG
1 GTGGGAGTGCACATAAGCCGTTG
2944342 CTGACCCAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.21, C:0.17, G:0.38, T:0.25
Consensus pattern (25 bp):
GTGGGAGTGCACATAAGCCGTTGTT
Found at i:2944360 original size:67 final size:67
Alignment explanation
Indices: 2944252--2944383 Score: 237
Period size: 67 Copynumber: 2.0 Consensus size: 67
2944242 CTATGTGCGA
** *
2944252 GTGGGAGTGCACATAAGCCGTTGCTGACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTG
1 GTGGGAGTGCACATAAGCCGTTGCTGACCCAACTATGTGCGAGTAGGAGTGCACATAAGCCGTTG
2944317 TT
66 TT
2944319 GTGGGAGTGCACATAAGCCGTTGCTGACCCAACTATGTGCGAGTAGGAGTGCACATAAGCCGTTG
1 GTGGGAGTGCACATAAGCCGTTGCTGACCCAACTATGTGCGAGTAGGAGTGCACATAAGCCGTTG
2944384 CTGACCCAAC
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 62 1.00
ACGTcount: A:0.22, C:0.21, G:0.34, T:0.23
Consensus pattern (67 bp):
GTGGGAGTGCACATAAGCCGTTGCTGACCCAACTATGTGCGAGTAGGAGTGCACATAAGCCGTTG
TT
Found at i:2944410 original size:109 final size:109
Alignment explanation
Indices: 2944210--2944425 Score: 342
Period size: 109 Copynumber: 2.0 Consensus size: 109
2944200 CTATGTGCGA
* * ** *
2944210 GTGGGAGTGCGCATAAGCCGTTGTTGACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTG
1 GTGGGAGTGCACATAAGCCGTTGCTGACCCAACTATGTGCGAGTAGGAGTGCACATAAGCCGTTG
** * * *
2944275 CTGACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGTT
66 CTGACCCAACGATGTGCAAGTAGGAGTGCACATAAGCCGTTGTT
2944319 GTGGGAGTGCACATAAGCCGTTGCTGACCCAACTATGTGCGAGTAGGAGTGCACATAAGCCGTTG
1 GTGGGAGTGCACATAAGCCGTTGCTGACCCAACTATGTGCGAGTAGGAGTGCACATAAGCCGTTG
2944384 CTGACCCAACGATGTGCAAGTAGGAGTGCACATAAGCCGTTG
66 CTGACCCAACGATGTGCAAGTAGGAGTGCACATAAGCCGTTG
2944426 CTGACCTGAT
Statistics
Matches: 97, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
109 97 1.00
ACGTcount: A:0.22, C:0.22, G:0.34, T:0.22
Consensus pattern (109 bp):
GTGGGAGTGCACATAAGCCGTTGCTGACCCAACTATGTGCGAGTAGGAGTGCACATAAGCCGTTG
CTGACCCAACGATGTGCAAGTAGGAGTGCACATAAGCCGTTGTT
Found at i:2944447 original size:151 final size:151
Alignment explanation
Indices: 2944168--2944467 Score: 420
Period size: 151 Copynumber: 2.0 Consensus size: 151
2944158 CTATGTGGGA
* ** * ** * *
2944168 GTGGGAGTGCATATAAGTTGTTGCTGACTCGGCTATGTGCGAGTGGGAGTGCGCATAAGCCGTTG
1 GTGGGAGTGCACATAAGCCGTTGCTGACCCAACTATGTGCGAGTAGGAGTGCACATAAGCCGTTG
* ** * * * * *
2944233 TTGACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCTGACCCGGCTATGTGCGAGTGG
66 CTGACCCAACGATGTGCAAGTAGGAGTGCACATAAGCCGTTGCTGACCCGACTATGTGCGAGTGA
2944298 GAGTGCACATAAGCCGTTGTT
131 GAGTGCACATAAGCCGTTGTT
2944319 GTGGGAGTGCACATAAGCCGTTGCTGACCCAACTATGTGCGAGTAGGAGTGCACATAAGCCGTTG
1 GTGGGAGTGCACATAAGCCGTTGCTGACCCAACTATGTGCGAGTAGGAGTGCACATAAGCCGTTG
* * *
2944384 CTGACCCAACGATGTGCAAGTAGGAGTGCACATAAGCCGTTGCTGACCTGATTATGTGTGAGTGA
66 CTGACCCAACGATGTGCAAGTAGGAGTGCACATAAGCCGTTGCTGACCCGACTATGTGCGAGTGA
*
2944449 GAGTGCACGTAAGCCGTTG
131 GAGTGCACATAAGCCGTTG
2944468 CTAGCCCGGC
Statistics
Matches: 129, Mismatches: 20, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
151 129 1.00
ACGTcount: A:0.22, C:0.20, G:0.34, T:0.24
Consensus pattern (151 bp):
GTGGGAGTGCACATAAGCCGTTGCTGACCCAACTATGTGCGAGTAGGAGTGCACATAAGCCGTTG
CTGACCCAACGATGTGCAAGTAGGAGTGCACATAAGCCGTTGCTGACCCGACTATGTGCGAGTGA
GAGTGCACATAAGCCGTTGTT
Found at i:2944455 original size:193 final size:193
Alignment explanation
Indices: 2944126--2944509 Score: 545
Period size: 193 Copynumber: 2.0 Consensus size: 193
2944116 CTATATGGGA
* * * * * **
2944126 GTGGGAGTGCACATAAGCTGTTGCTCACCCGACTATGTGGGAGTGGGAGTGCATATAAGTTGTTG
1 GTGGGAGTGCACATAAGCCGTTGCTCACCCAACTATGTGCGAGTAGGAGTGCACATAAGCCGTTG
* ** * * * * * * *
2944191 CTGACTCGGCTATGTGCGAGTGGGAGTGCGCATAAGCCGTTGTTGACCCGGCTATGTGCGAGTGG
66 CTGACCCAACGATGTGCAAGTAGGAGTGCACATAAGCCGTTGCTGACCCGACTATGTGCGAGTGA
2944256 GAGTGCACATAAGCCGTTGCT-GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGTT
131 GAGTGCACATAAGCCGTTGCTAG-CCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGTT
*
2944319 GTGGGAGTGCACATAAGCCGTTGCTGACCCAACTATGTGCGAGTAGGAGTGCACATAAGCCGTTG
1 GTGGGAGTGCACATAAGCCGTTGCTCACCCAACTATGTGCGAGTAGGAGTGCACATAAGCCGTTG
* * *
2944384 CTGACCCAACGATGTGCAAGTAGGAGTGCACATAAGCCGTTGCTGACCTGATTATGTGTGAGTGA
66 CTGACCCAACGATGTGCAAGTAGGAGTGCACATAAGCCGTTGCTGACCCGACTATGTGCGAGTGA
* *
2944449 GAGTGCACGTAAGCCGTTGCTAGCCCGGCTATGTGTGAGTGGGAGTGCACATAAGCCGTTG
131 GAGTGCACATAAGCCGTTGCTAGCCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTG
2944510 CTGACCCGGC
Statistics
Matches: 167, Mismatches: 23, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
193 166 0.99
194 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.34, T:0.24
Consensus pattern (193 bp):
GTGGGAGTGCACATAAGCCGTTGCTCACCCAACTATGTGCGAGTAGGAGTGCACATAAGCCGTTG
CTGACCCAACGATGTGCAAGTAGGAGTGCACATAAGCCGTTGCTGACCCGACTATGTGCGAGTGA
GAGTGCACATAAGCCGTTGCTAGCCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGTT
Found at i:2944495 original size:235 final size:236
Alignment explanation
Indices: 2944084--2944524 Score: 636
Period size: 235 Copynumber: 1.9 Consensus size: 236
2944074 CTATGTGCGA
** * * *
2944084 GTGGGAGTGCACATAAGCCGTTGCTGACCCGGCTATATGGGAGTGGGAGTGCACATAAGCTGTTG
1 GTGGGAGTGCACATAAGCCGTTGCTGACCCAACTATATGCGAGTAGGAGTGCACATAAGCCGTTG
* * ** * * ** * *
2944149 CTCACCCGACTATGTGGGAGTGGGAGTGCATATAAGTTGTTGCTGACTCGGCTATGTGCGAGTGG
66 CTCACCCAACGATGTGCAAGTAGGAGTGCACATAAGCCGTTGCTGACTCGACTATGTGCGAGTGA
* *
2944214 GAGTGCGCATAAGCCGTTGTTGACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCTGA
131 GAGTGCACATAAGCCGTTGTAGACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCTGA
2944279 CCCGGC-TATGTGCGAGTGGGAGTGCACATAAGCCGTTGTT
196 CCCGGCATATGTGCGAGTGGGAGTGCACATAAGCCGTTGTT
*
2944319 GTGGGAGTGCACATAAGCCGTTGCTGACCCAACTATGTGCGAGTAGGAGTGCACATAAGCCGTTG
1 GTGGGAGTGCACATAAGCCGTTGCTGACCCAACTATATGCGAGTAGGAGTGCACATAAGCCGTTG
* * *
2944384 CTGACCCAACGATGTGCAAGTAGGAGTGCACATAAGCCGTTGCTGAC-CTGATTATGTGTGAGTG
66 CTCACCCAACGATGTGCAAGTAGGAGTGCACATAAGCCGTTGCTGACTC-GACTATGTGCGAGTG
* *
2944448 AGAGTGCACGTAAGCCGTTGCTAG-CCCGGCTATGTGTGAGTGGGAGTGCACATAAGCCGTTGCT
130 AGAGTGCACATAAGCCGTTG-TAGACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
2944512 GACCCGGCATATG
194 GACCCGGCATATG
2944525 CGCATAAGCC
Statistics
Matches: 180, Mismatches: 23, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
234 1 0.01
235 173 0.96
236 6 0.03
ACGTcount: A:0.21, C:0.21, G:0.34, T:0.24
Consensus pattern (236 bp):
GTGGGAGTGCACATAAGCCGTTGCTGACCCAACTATATGCGAGTAGGAGTGCACATAAGCCGTTG
CTCACCCAACGATGTGCAAGTAGGAGTGCACATAAGCCGTTGCTGACTCGACTATGTGCGAGTGA
GAGTGCACATAAGCCGTTGTAGACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCTGA
CCCGGCATATGTGCGAGTGGGAGTGCACATAAGCCGTTGTT
Found at i:2944519 original size:42 final size:42
Alignment explanation
Indices: 2944319--2944517 Score: 265
Period size: 42 Copynumber: 4.7 Consensus size: 42
2944309 AGCCGTTGTT
*
2944319 GTGGGAGTGCACATAAGCCGTTGCTGACCCAACTATGTGCGA
1 GTGGGAGTGCACATAAGCCGTTGCTGACCCGACTATGTGCGA
* * * *
2944361 GTAGGAGTGCACATAAGCCGTTGCTGACCCAACGATGTGCAA
1 GTGGGAGTGCACATAAGCCGTTGCTGACCCGACTATGTGCGA
* * * *
2944403 GTAGGAGTGCACATAAGCCGTTGCTGACCTGATTATGTGTGA
1 GTGGGAGTGCACATAAGCCGTTGCTGACCCGACTATGTGCGA
* * * *
2944445 GTGAGAGTGCACGTAAGCCGTTGCT-AGCCCGGCTATGTGTGA
1 GTGGGAGTGCACATAAGCCGTTGCTGA-CCCGACTATGTGCGA
2944487 GTGGGAGTGCACATAAGCCGTTGCTGACCCG
1 GTGGGAGTGCACATAAGCCGTTGCTGACCCG
2944518 GCATATGCGC
Statistics
Matches: 138, Mismatches: 17, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
41 1 0.01
42 136 0.99
43 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (42 bp):
GTGGGAGTGCACATAAGCCGTTGCTGACCCGACTATGTGCGA
Found at i:2944540 original size:29 final size:30
Alignment explanation
Indices: 2944498--2944569 Score: 119
Period size: 29 Copynumber: 2.4 Consensus size: 30
2944488 TGGGAGTGCA
2944498 CATAAGCCGTTGCTGACCCGGC-ATATGCG
1 CATAAGCCGTTGCTGACCCGGCTATATGCG
* *
2944527 CATAAGCCGTTGCTGACTCTGCTATATGCG
1 CATAAGCCGTTGCTGACCCGGCTATATGCG
2944557 CATAAGCCGTTGC
1 CATAAGCCGTTGC
2944570 ATATGAGATG
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
29 20 0.50
30 20 0.50
ACGTcount: A:0.21, C:0.29, G:0.25, T:0.25
Consensus pattern (30 bp):
CATAAGCCGTTGCTGACCCGGCTATATGCG
Found at i:2944612 original size:26 final size:26
Alignment explanation
Indices: 2944576--2944637 Score: 115
Period size: 26 Copynumber: 2.4 Consensus size: 26
2944566 TTGCATATGA
2944576 GATGATGATGATGGGATGGTGTGCAT
1 GATGATGATGATGGGATGGTGTGCAT
2944602 GATGATGATGATGGGATGGTGTGCAT
1 GATGATGATGATGGGATGGTGTGCAT
*
2944628 GTTGATGATG
1 GATGATGATG
2944638 GGTATATGGT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.23, C:0.03, G:0.42, T:0.32
Consensus pattern (26 bp):
GATGATGATGATGGGATGGTGTGCAT
Found at i:2947586 original size:15 final size:15
Alignment explanation
Indices: 2947566--2947599 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
2947556 TAATGGACAC
2947566 AAAAAAGAAAAAAAG
1 AAAAAAGAAAAAAAG
* *
2947581 AAAAAAGGAAAAGAG
1 AAAAAAGAAAAAAAG
2947596 AAAA
1 AAAA
2947600 GAATATGTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (15 bp):
AAAAAAGAAAAAAAG
Found at i:2950512 original size:23 final size:23
Alignment explanation
Indices: 2950486--2950545 Score: 77
Period size: 23 Copynumber: 2.6 Consensus size: 23
2950476 AACTTATCAA
*
2950486 AGACTTAGACTTTTACAATATC-T
1 AGACTTGGACTTTTACAATA-CAT
*
2950509 AGACTTGGACTTTTGCAATACAT
1 AGACTTGGACTTTTACAATACAT
*
2950532 AGGCTTGGACTTTT
1 AGACTTGGACTTTT
2950546 TTTACAAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
22 1 0.03
23 32 0.97
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (23 bp):
AGACTTGGACTTTTACAATACAT
Found at i:2958243 original size:28 final size:28
Alignment explanation
Indices: 2958211--2958264 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
2958201 TAAATATGAT
*
2958211 GAATATTAATATTTAATTTAAAAAATAA
1 GAATATTAATATTTAACTTAAAAAATAA
2958239 GAATATTAATATTTAACTTAAAAAAT
1 GAATATTAATATTTAACTTAAAAAAT
2958265 TTTAATTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.56, C:0.02, G:0.04, T:0.39
Consensus pattern (28 bp):
GAATATTAATATTTAACTTAAAAAATAA
Found at i:2960050 original size:20 final size:19
Alignment explanation
Indices: 2960019--2960058 Score: 71
Period size: 20 Copynumber: 2.1 Consensus size: 19
2960009 ATAACATATG
2960019 AACAAATAAAATAAAAATA
1 AACAAATAAAATAAAAATA
2960038 AACAAATATAAATAAAAATA
1 AACAAATA-AAATAAAAATA
2960058 A
1 A
2960059 TAATATAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.17
Consensus pattern (19 bp):
AACAAATAAAATAAAAATA
Found at i:2970439 original size:18 final size:18
Alignment explanation
Indices: 2970416--2970452 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
2970406 TGGTGGTGGT
*
2970416 AGTAGGGATAGAGGCAAC
1 AGTAGGAATAGAGGCAAC
*
2970434 AGTAGGAATAGTGGCAAC
1 AGTAGGAATAGAGGCAAC
2970452 A
1 A
2970453 ATATTATCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.41, C:0.11, G:0.35, T:0.14
Consensus pattern (18 bp):
AGTAGGAATAGAGGCAAC
Found at i:2970922 original size:30 final size:30
Alignment explanation
Indices: 2970853--2970913 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
2970843 TTTATAGGTA
* *
2970853 GAGAATGAAGTGAATGTTCCACCAAATTAG
1 GAGAATGAGGTAAATGTTCCACCAAATTAG
*
2970883 GAGAATGAGGTAAATGTTGCACCAAATTAG
1 GAGAATGAGGTAAATGTTCCACCAAATTAG
2970913 G
1 G
2970914 GAGTTGAGGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.39, C:0.11, G:0.26, T:0.23
Consensus pattern (30 bp):
GAGAATGAGGTAAATGTTCCACCAAATTAG
Found at i:2972248 original size:16 final size:16
Alignment explanation
Indices: 2972223--2972253 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
2972213 TCATATTAAG
2972223 TCAATATATTTTAAAA
1 TCAATATATTTTAAAA
*
2972239 TCAATTTATTTTAAA
1 TCAATATATTTTAAA
2972254 TTTCAAAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.48
Consensus pattern (16 bp):
TCAATATATTTTAAAA
Found at i:2972610 original size:2 final size:2
Alignment explanation
Indices: 2972605--2972648 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
2972595 CTCTTTTATC
2972605 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2972647 AT
1 AT
2972649 TATTATTTAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2975829 original size:46 final size:46
Alignment explanation
Indices: 2975734--2975822 Score: 178
Period size: 46 Copynumber: 1.9 Consensus size: 46
2975724 TTTTTCGACC
2975734 AATAGATAAAAATCCAACCAAATGGAATACATATTTTTAGTAACCA
1 AATAGATAAAAATCCAACCAAATGGAATACATATTTTTAGTAACCA
2975780 AATAGATAAAAATCCAACCAAATGGAATACATATTTTTAGTAA
1 AATAGATAAAAATCCAACCAAATGGAATACATATTTTTAGTAA
2975823 TGAAATAAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.51, C:0.13, G:0.09, T:0.27
Consensus pattern (46 bp):
AATAGATAAAAATCCAACCAAATGGAATACATATTTTTAGTAACCA
Found at i:2983465 original size:21 final size:20
Alignment explanation
Indices: 2983418--2983465 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
2983408 TGATATTAAC
*
2983418 ATATTAAATAAAAATGTCAT
1 ATATTAAATAAAAATATCAT
* *
2983438 ATGATTAAATTATAATATCATT
1 AT-ATTAAATAAAAATATCA-T
2983460 ATATTA
1 ATATTA
2983466 TGTTATTATC
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 2 0.09
21 18 0.78
22 3 0.13
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.42
Consensus pattern (20 bp):
ATATTAAATAAAAATATCAT
Found at i:2991087 original size:22 final size:22
Alignment explanation
Indices: 2991056--2991112 Score: 80
Period size: 21 Copynumber: 2.6 Consensus size: 22
2991046 AATCACTGTA
*
2991056 TGATTAGTTTTTAGGCATTACG
1 TGATTGGTTTTTAGGCATTACG
*
2991078 TGATTGG-TTTTAGGCATTGCG
1 TGATTGGTTTTTAGGCATTACG
*
2991099 TGACTGGTTTTTAG
1 TGATTGGTTTTTAG
2991113 ATATTGCGTG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
21 19 0.61
22 12 0.39
ACGTcount: A:0.18, C:0.09, G:0.28, T:0.46
Consensus pattern (22 bp):
TGATTGGTTTTTAGGCATTACG
Found at i:2991118 original size:22 final size:22
Alignment explanation
Indices: 2991062--2991133 Score: 92
Period size: 22 Copynumber: 3.3 Consensus size: 22
2991052 TGTATGATTA
* *
2991062 GTTTTTAGGCATTACGTGATTG
1 GTTTTTAGGCATTGCGTGACTG
2991084 G-TTTTAGGCATTGCGTGACTG
1 GTTTTTAGGCATTGCGTGACTG
**
2991105 GTTTTTAGATATTGCGTGACTG
1 GTTTTTAGGCATTGCGTGACTG
*
2991127 ATTTTTA
1 GTTTTTA
2991134 AACAATGCTT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
21 19 0.43
22 25 0.57
ACGTcount: A:0.18, C:0.10, G:0.26, T:0.46
Consensus pattern (22 bp):
GTTTTTAGGCATTGCGTGACTG
Found at i:2991178 original size:23 final size:23
Alignment explanation
Indices: 2991144--2991224 Score: 94
Period size: 23 Copynumber: 3.6 Consensus size: 23
2991134 AACAATGCTT
*
2991144 AAGTCACACAATGCCTTACTAAC
1 AAGTCACGCAATGCCTTACTAAC
* *
2991167 AAGTCACGCAATACCTTACTAAT
1 AAGTCACGCAATGCCTTACTAAC
2991190 AAGTCACGCAATG-CTTA-TCAAC
1 AAGTCACGCAATGCCTTACT-AAC
* *
2991212 TAGTCATGCAATG
1 AAGTCACGCAATG
2991225 TCATATCAAC
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
21 1 0.02
22 17 0.34
23 32 0.64
ACGTcount: A:0.37, C:0.26, G:0.12, T:0.25
Consensus pattern (23 bp):
AAGTCACGCAATGCCTTACTAAC
Found at i:2991216 original size:22 final size:22
Alignment explanation
Indices: 2991191--2991270 Score: 88
Period size: 22 Copynumber: 3.6 Consensus size: 22
2991181 CTTACTAATA
2991191 AGTCACGCAATGCTTATCAACT
1 AGTCACGCAATGCTTATCAACT
* *
2991213 AGTCATGCAATGTCATATCAACT
1 AGTCACGCAATG-CTTATCAACT
* ** **
2991236 AGTCACACAATATTTAAAAACT
1 AGTCACGCAATGCTTATCAACT
2991258 AGTCACGCAATGC
1 AGTCACGCAATGC
2991271 CGAAAGTCAA
Statistics
Matches: 45, Mismatches: 12, Indels: 2
0.76 0.20 0.03
Matches are distributed among these distances:
22 27 0.60
23 18 0.40
ACGTcount: A:0.38, C:0.24, G:0.12, T:0.26
Consensus pattern (22 bp):
AGTCACGCAATGCTTATCAACT
Found at i:2991288 original size:21 final size:20
Alignment explanation
Indices: 2991264--2991313 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 20
2991254 AACTAGTCAC
2991264 GCAATGCCGAAAGTCAATCAT
1 GCAATGCC-AAAGTCAATCAT
* *
2991285 GCAATATCCAAAGTCAGTCAT
1 GCAAT-GCCAAAGTCAATCAT
2991306 GCAATGCC
1 GCAATGCC
2991314 TAAAAACTAG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 2 0.08
21 21 0.84
22 2 0.08
ACGTcount: A:0.36, C:0.26, G:0.18, T:0.20
Consensus pattern (20 bp):
GCAATGCCAAAGTCAATCAT
Found at i:2991331 original size:22 final size:22
Alignment explanation
Indices: 2991191--2991341 Score: 65
Period size: 22 Copynumber: 6.9 Consensus size: 22
2991181 CTTACTAATA
* **
2991191 AGTCACGCAATGCTTATCAACT
1 AGTCACGCAATGCCTAAAAACT
* * **
2991213 AGTCATGCAATGTCATATCAACT
1 AGTCACGCAATG-CCTAAAAACT
* ***
2991236 AGTCACACAATATTTAAAAACT
1 AGTCACGCAATGCCTAAAAACT
* **
2991258 AGTCACGCAATGCCGAAAGTC-
1 AGTCACGCAATGCCTAAAAACT
* * * **
2991279 AATCATGCAATATCC-AAAGTC-
1 AGTCACGCAAT-GCCTAAAAACT
*
2991300 AGTCATGCAATGCCTAAAAACT
1 AGTCACGCAATGCCTAAAAACT
* *
2991322 AGTCACGCAATACCCAAAAA
1 AGTCACGCAATGCCTAAAAA
2991342 TCACAAAAAC
Statistics
Matches: 99, Mismatches: 26, Indels: 8
0.74 0.20 0.06
Matches are distributed among these distances:
20 2 0.02
21 29 0.29
22 50 0.51
23 18 0.18
ACGTcount: A:0.40, C:0.25, G:0.13, T:0.23
Consensus pattern (22 bp):
AGTCACGCAATGCCTAAAAACT
Found at i:2991505 original size:10 final size:10
Alignment explanation
Indices: 2991479--2991515 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
2991469 TTTTCATATA
2991479 TCAAAAATCAC
1 TCAAAAAT-AC
2991490 TCAAAAATAC
1 TCAAAAATAC
*
2991500 TTAAAAATAC
1 TCAAAAATAC
2991510 TCAAAA
1 TCAAAA
2991516 CGCTCAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
10 16 0.67
11 8 0.33
ACGTcount: A:0.59, C:0.19, G:0.00, T:0.22
Consensus pattern (10 bp):
TCAAAAATAC
Found at i:2998051 original size:15 final size:15
Alignment explanation
Indices: 2998018--2998073 Score: 67
Period size: 15 Copynumber: 3.7 Consensus size: 15
2998008 TCTTCTTTGC
* * *
2998018 AATCACATTGCTTGC
1 AATCACATTACCTGT
2998033 AATCACATTACCTGT
1 AATCACATTACCTGT
*
2998048 AATCATATTACCTGT
1 AATCACATTACCTGT
*
2998063 AATCATATTAC
1 AATCACATTAC
2998074 ATTGTAAAGT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 37 1.00
ACGTcount: A:0.34, C:0.23, G:0.07, T:0.36
Consensus pattern (15 bp):
AATCACATTACCTGT
Found at i:3004347 original size:24 final size:23
Alignment explanation
Indices: 3004310--3004384 Score: 60
Period size: 24 Copynumber: 3.2 Consensus size: 23
3004300 TCCTGTTGCT
* *
3004310 CCTCCTCTTCCTTCTGCTGCTGCC
1 CCTCCTCCTACTTC-GCTGCTGCC
* *
3004334 CCTCCTCCTACTTCACTGCTACC
1 CCTCCTCCTACTTCGCTGCTGCC
* ** *
3004357 CCTTCTCCTGTTTCAGGTGCTGCC
1 CCTCCTCCTACTTC-GCTGCTGCC
3004381 CCTC
1 CCTC
3004385 ACGCTGAGCT
Statistics
Matches: 39, Mismatches: 11, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
23 18 0.46
24 21 0.54
ACGTcount: A:0.05, C:0.48, G:0.12, T:0.35
Consensus pattern (23 bp):
CCTCCTCCTACTTCGCTGCTGCC
Found at i:3004544 original size:24 final size:24
Alignment explanation
Indices: 3004516--3004571 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
3004506 ACAGATGCAT
* *
3004516 GCAATGCAGTTGGAGATCTAGCAG
1 GCAATGCAGTTAGAGATCCAGCAG
* *
3004540 TCAATGCAGTTAGAGATCCAGCGG
1 GCAATGCAGTTAGAGATCCAGCAG
3004564 GCAATGCA
1 GCAATGCA
3004572 AATCTAGATG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.30, C:0.20, G:0.30, T:0.20
Consensus pattern (24 bp):
GCAATGCAGTTAGAGATCCAGCAG
Found at i:3006260 original size:26 final size:26
Alignment explanation
Indices: 3006228--3006280 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3006218 TAACATTATT
*
3006228 TTGTATCATGTCCATATTATTCTTTG
1 TTGTATCATGTACATATTATTCTTTG
*
3006254 TTGTATCATTTACATATTATTCTTTG
1 TTGTATCATGTACATATTATTCTTTG
3006280 T
1 T
3006281 ATTCTTTTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.21, C:0.13, G:0.09, T:0.57
Consensus pattern (26 bp):
TTGTATCATGTACATATTATTCTTTG
Found at i:3006787 original size:23 final size:23
Alignment explanation
Indices: 3006759--3006811 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
3006749 GGAGTGTGTT
3006759 ACTAGTTATTATGGAAGCGCGTG
1 ACTAGTTATTATGGAAGCGCGTG
* * *
3006782 ACTAGTTTTTGTGGAATCGCGTG
1 ACTAGTTATTATGGAAGCGCGTG
3006805 ACTAGTT
1 ACTAGTT
3006812 GATATTGACT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.23, C:0.13, G:0.28, T:0.36
Consensus pattern (23 bp):
ACTAGTTATTATGGAAGCGCGTG
Found at i:3014637 original size:201 final size:205
Alignment explanation
Indices: 3014260--3014742 Score: 532
Period size: 201 Copynumber: 2.4 Consensus size: 205
3014250 CCACCAGTCT
* * * * * * *
3014260 CGCAATACATAACTATAGGTCACGC-AATATATAAAAACCAATCACGCAATGCCTAAAACCTACT
1 CGCAATACATAACAACAAGTCAC-CAAATACATACAAACCAGTCACGCAATGCCTAAAAACTACT
* * * *
3014324 GAACAAAAGCATCTAAACAAGACATGAATTGCACAAGTCACTACGCACCGCCAAGCTCGCAACAC
65 AAACAAAAGCCTCAAAACAAGACATGAATTGCACAAGT-ACTACGCACCACCAAGCTCGCAACAC
* *
3014389 CTAAGAATAAGTCACTCAATGCCTTATACTCACTCACATTATGCCAACATAACCACTCAC-TACT
129 CTAAGAATAAGTCACTCAATGCCTAATACTCACTCACATCATGCCAACATAACCACTCACGTACT
*
3014453 GGCCCAATGTCA
194 AGCCCAATGTCA
* * ** **
3014465 CGTAATACATAACAACAGGTCA-CAGAATACATA-AAAGTAGTCACGCAATGTATAAAAACTACT
1 CGCAATACATAACAACAAGTCACCA-AATACATACAAACCAGTCACGCAATGCCTAAAAACTACT
* ** *
3014528 AAACAAAAGCCTCAAAATAAGAGGTGAATTGCACAAGT-C-ACGCACCACC-AGTCTCGCAATAC
65 AAACAAAAGCCTCAAAACAAGACATGAATTGCACAAGTACTACGCACCACCAAG-CTCGCAACAC
* * * * * * * * *
3014590 TTAATAATAAGTTAGTCGATGCCTAATA-TCCACTCACGTCATGCCAACATAACTAGTCACGTAT
129 CTAAGAATAAGTCACTCAATGCCTAATACT-CACTCACATCATGCCAACATAACCACTCACGTAC
3014654 TAGCCCAATGTCA
193 TAGCCCAATGTCA
* * * *
3014667 CGCAATGCATAACAACAAGTCACCACATACATACAAACCAGTCACGCGATGCCTAAAAACTAGTA
1 CGCAATACATAACAACAAGTCACCAAATACATACAAACCAGTCACGCAATGCCTAAAAACTACTA
3014732 AACAAAAGCCT
66 AACAAAAGCCT
3014743 TAAACTCGGT
Statistics
Matches: 231, Mismatches: 40, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
200 3 0.01
201 66 0.29
202 41 0.18
203 39 0.17
204 56 0.24
205 26 0.11
ACGTcount: A:0.41, C:0.27, G:0.12, T:0.20
Consensus pattern (205 bp):
CGCAATACATAACAACAAGTCACCAAATACATACAAACCAGTCACGCAATGCCTAAAAACTACTA
AACAAAAGCCTCAAAACAAGACATGAATTGCACAAGTACTACGCACCACCAAGCTCGCAACACCT
AAGAATAAGTCACTCAATGCCTAATACTCACTCACATCATGCCAACATAACCACTCACGTACTAG
CCCAATGTCA
Found at i:3014795 original size:15 final size:15
Alignment explanation
Indices: 3014775--3014809 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
3014765 TTTACAATGC
*
3014775 AATGTAATTACAGGT
1 AATGTAATTACAAGT
3014790 AATGTAATTACAAGT
1 AATGTAATTACAAGT
3014805 AATGT
1 AATGT
3014810 GATTGCAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.43, C:0.06, G:0.17, T:0.34
Consensus pattern (15 bp):
AATGTAATTACAAGT
Found at i:3015099 original size:33 final size:33
Alignment explanation
Indices: 3015047--3015133 Score: 97
Period size: 33 Copynumber: 2.6 Consensus size: 33
3015037 TTTTAATGTC
*
3015047 ATATATTTTATTTTCATTTTTTATTATAATATT
1 ATATATTTTATTTTCATTTTTTAATATAATATT
* *
3015080 ATAT-TTTTCATTTTTATTTTTTAATATAATTTT
1 ATATATTTT-ATTTTCATTTTTTAATATAATATT
*
3015113 TTATATTATATATTTT-ATTTT
1 ATATATT-T-TATTTTCATTTT
3015134 AATTTCATTT
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
32 4 0.09
33 28 0.61
34 7 0.15
35 6 0.13
36 1 0.02
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (33 bp):
ATATATTTTATTTTCATTTTTTAATATAATATT
Found at i:3015217 original size:26 final size:27
Alignment explanation
Indices: 3015106--3015220 Score: 92
Period size: 26 Copynumber: 4.1 Consensus size: 27
3015096 TTTTTTAATA
* *
3015106 TAATTTTTTATATTATATATTTTATTT
1 TAATTTCTTACATTATATATTTTATTT
** **
3015133 TAATTTCATTTACCCTATATTATATAAATTT
1 TAATTTC--TTACATTATA-TAT-TTTATTT
3015164 TAATTTCTT-CTATT-T-TATTTTAATTT
1 TAATTTCTTAC-ATTATATATTTT-ATTT
*
3015190 TTATTTCTTACATTATATATTTTATTT
1 TAATTTCTTACATTATATATTTTATTT
3015217 TAAT
1 TAAT
3015221 ATTTTTTTAT
Statistics
Matches: 67, Mismatches: 12, Indels: 18
0.69 0.12 0.19
Matches are distributed among these distances:
25 1 0.01
26 18 0.27
27 15 0.22
28 8 0.12
29 10 0.15
30 3 0.04
31 12 0.18
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (27 bp):
TAATTTCTTACATTATATATTTTATTT
Found at i:3015860 original size:211 final size:212
Alignment explanation
Indices: 3015420--3015951 Score: 685
Period size: 211 Copynumber: 2.5 Consensus size: 212
3015410 CACCCTCACA
* ** * * *
3015420 ATACCTAATAATAAGTCACTCAACACGTAATATCCACTCACATTATGCCAACATAACCAGTCCCA
1 ATACCTAATAATAAGTCACTCGATGCCTAATATCCACTCACGTTATGCCAACATAACCAGTCCCG
*** * * *
3015485 TA-GCGTTAACATGTCACACAATACATAACAACAGGATCACGCAATATATAAAAATCAATCACGC
66 TATG-GCCCA-ATGTCACGCAATACATAACAACAGGATCACGCAATATATAAAAACCAATCACAC
* * * *
3015549 AATGCAATGCCTACAAACTAGTGAACAAAAGTCTCAAAACAAGAGATAAACTGCACAAGTCAGTC
129 AAGGCAAAGCCTACAAACTAGTGAACAAAAGCCTCAAAACAAGAGATAAACTGCACAAATCAGTC
* * *
3015614 ACACACCGGTAGTCTCGCT
194 ACACACCAGCAATCTCGCT
**
3015633 ATACCTAATAATAAGTCACTCGATGCCTAATATCCACTCACGTTATGCCAACATAACCAGTCTTG
1 ATACCTAATAATAAGTCACTCGATGCCTAATATCCACTCACGTTATGCCAACATAACCAGTCCCG
* * * *
3015698 TGATGGCCCAATGTCACGCAATACATAACAATAGG-TCATGCAATATAT-CAAACCAGTCACACA
66 T-ATGGCCCAATGTCACGCAATACATAACAACAGGATCACGCAATATATAAAAACCAATCACACA
* *
3015761 AGGTAAAGCCTACAAACTAGTGAACAAAAGCCTCAAAACAAGAGATAAATTGCACAAATCAGTCA
130 AGGCAAAGCCTACAAACTAGTGAACAAAAGCCTCAAAACAAGAGATAAACTGCACAAATCAGTCA
** *
3015826 TGCACCAGCAATCTTGCT
195 CACACCAGCAATCTCGCT
* *
3015844 ATACCTAATAATAAGTCACTCGATGCCTAATATCCACTCATGTTATGCCAACATAACTAGTCCCG
1 ATACCTAATAATAAGTCACTCGATGCCTAATATCCACTCACGTTATGCCAACATAACCAGTCCCG
* * *
3015909 TAATGGCCCAATGTCATGCAATACATTACAACAAG-TCACGCAA
66 T-ATGGCCCAATGTCACGCAATACATAACAACAGGATCACGCAA
3015952 GGCAAAGCCT
Statistics
Matches: 277, Mismatches: 40, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
211 180 0.65
212 12 0.04
213 81 0.29
214 3 0.01
215 1 0.00
ACGTcount: A:0.40, C:0.26, G:0.13, T:0.22
Consensus pattern (212 bp):
ATACCTAATAATAAGTCACTCGATGCCTAATATCCACTCACGTTATGCCAACATAACCAGTCCCG
TATGGCCCAATGTCACGCAATACATAACAACAGGATCACGCAATATATAAAAACCAATCACACAA
GGCAAAGCCTACAAACTAGTGAACAAAAGCCTCAAAACAAGAGATAAACTGCACAAATCAGTCAC
ACACCAGCAATCTCGCT
Found at i:3015996 original size:190 final size:189
Alignment explanation
Indices: 3015732--3016090 Score: 574
Period size: 190 Copynumber: 1.9 Consensus size: 189
3015722 ATAACAATAG
* * *
3015732 GTCATGCAATATATCAAACCAGTCACACAAGGTAAAGCCTACAAACTAGTGAACAAAAGCCTCAA
1 GTCATGCAATACATCAAACAAGTCACACAAGGCAAAGCCTACAAACTAGTGAACAAAAGCCTCAA
* *
3015797 AACAAGAGATAAATTGCACAAATCAGTCATGCACCAGCAATCTTGCTATACCTAATAATAAGTCA
66 AACAAGAGATAAATTGCACAAATCAGTCACGCACCAGCAATCTCGCTATACCTAATAATAAGTCA
* * *
3015862 CTCGATGCCTAATATCCACTCATGTTATGCCAACATAACTAGTCCCGTAATGGCCCAAT
131 CTCCATGCCTAATATCCACTCACGTCATGCCAACATAACTAGTCCCGTAATGGCCCAAT
* *
3015921 GTCATGCAATACATTACAACAAGTCACGCAAGGCAAAGCCTACAAACTAGTGAACAAAAGCCTCA
1 GTCATGCAATACATCA-AACAAGTCACACAAGGCAAAGCCTACAAACTAGTGAACAAAAGCCTCA
* * * * *
3015986 AAATAAGAGATAAATTGCACAAGTCAGTCACGTACGAGCAGTCTCGCTATACCTAATAATAAGTC
65 AAACAAGAGATAAATTGCACAAATCAGTCACGCACCAGCAATCTCGCTATACCTAATAATAAGTC
3016051 ACTCCATGCCTAATATCCACTCACGTCATGCCAACATAAC
130 ACTCCATGCCTAATATCCACTCACGTCATGCCAACATAAC
3016091 CATTCATGTA
Statistics
Matches: 154, Mismatches: 15, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
189 14 0.09
190 140 0.91
ACGTcount: A:0.39, C:0.26, G:0.14, T:0.21
Consensus pattern (189 bp):
GTCATGCAATACATCAAACAAGTCACACAAGGCAAAGCCTACAAACTAGTGAACAAAAGCCTCAA
AACAAGAGATAAATTGCACAAATCAGTCACGCACCAGCAATCTCGCTATACCTAATAATAAGTCA
CTCCATGCCTAATATCCACTCACGTCATGCCAACATAACTAGTCCCGTAATGGCCCAAT
Found at i:3016122 original size:190 final size:190
Alignment explanation
Indices: 3015752--3016131 Score: 553
Period size: 190 Copynumber: 2.0 Consensus size: 190
3015742 ATATCAAACC
*
3015752 AGTCACACAAGGTAAAGCCTACAAACTAGTGAACAAAAGCCTCAAAACAAGAGATAAATTGCACA
1 AGTCACACAAGGCAAAGCCTACAAACTAGTGAACAAAAGCCTCAAAACAAGAGATAAATTGCACA
* * *
3015817 AATCAGTCATGCACCAGCAATCTTGCTATACCTAATAATAAGTCACTCGATGCCTAATATCCACT
66 AATCAGTCACGCACCAGCAATCTCGCTATACCTAATAATAAGTCACTCCATGCCTAATATCCACT
* * * * ** ** * *
3015882 CATGTTATGCCAACATAACTAGTCCCGTAATGGCCCAATGTCATGCAATACATTACAACA
131 CACGTCATGCCAACATAACCAGTCACGTAATACCCCAACATCACGCAATACATAACAACA
* *
3015942 AGTCACGCAAGGCAAAGCCTACAAACTAGTGAACAAAAGCCTCAAAATAAGAGATAAATTGCACA
1 AGTCACACAAGGCAAAGCCTACAAACTAGTGAACAAAAGCCTCAAAACAAGAGATAAATTGCACA
* * * *
3016007 AGTCAGTCACGTACGAGCAGTCTCGCTATACCTAATAATAAGTCACTCCATGCCTAATATCCACT
66 AATCAGTCACGCACCAGCAATCTCGCTATACCTAATAATAAGTCACTCCATGCCTAATATCCACT
* * *
3016072 CACGTCATGCCAACATAACCATTCATGTACTACCCCAACATCACGCAATACATAACAACA
131 CACGTCATGCCAACATAACCAGTCACGTAATACCCCAACATCACGCAATACATAACAACA
3016132 CATCACCATA
Statistics
Matches: 167, Mismatches: 23, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
190 167 1.00
ACGTcount: A:0.39, C:0.27, G:0.13, T:0.21
Consensus pattern (190 bp):
AGTCACACAAGGCAAAGCCTACAAACTAGTGAACAAAAGCCTCAAAACAAGAGATAAATTGCACA
AATCAGTCACGCACCAGCAATCTCGCTATACCTAATAATAAGTCACTCCATGCCTAATATCCACT
CACGTCATGCCAACATAACCAGTCACGTAATACCCCAACATCACGCAATACATAACAACA
Found at i:3017333 original size:22 final size:22
Alignment explanation
Indices: 3017305--3017386 Score: 74
Period size: 22 Copynumber: 3.5 Consensus size: 22
3017295 TAGGTAGATA
3017305 AAGTCACGCAATGCCTACAAAC
1 AAGTCACGCAATGCCTACAAAC
** * *
3017327 AAGTCACGCAACACTCAACAAAT
1 AAGTCACGCAATGC-CTACAAAC
*
3017350 ATTCAGTCACGTAATGCCTACAAAC
1 A---AGTCACGCAATGCCTACAAAC
*
3017375 ATGTCACGCAAT
1 AAGTCACGCAAT
3017387 TCTCAACAAA
Statistics
Matches: 45, Mismatches: 11, Indels: 8
0.70 0.17 0.12
Matches are distributed among these distances:
22 21 0.47
23 7 0.16
25 7 0.16
26 10 0.22
ACGTcount: A:0.40, C:0.29, G:0.12, T:0.18
Consensus pattern (22 bp):
AAGTCACGCAATGCCTACAAAC
Found at i:3017381 original size:48 final size:48
Alignment explanation
Indices: 3017306--3017412 Score: 160
Period size: 48 Copynumber: 2.2 Consensus size: 48
3017296 AGGTAGATAA
*
3017306 AGTCACGCAATGCCTACAAACAAGTCACGCAACACTCAACAAATATTC
1 AGTCACGTAATGCCTACAAACAAGTCACGCAACACTCAACAAATATTC
* ** *
3017354 AGTCACGTAATGCCTACAAACATGTCACGCAATTCTCAACAAATATTT
1 AGTCACGTAATGCCTACAAACAAGTCACGCAACACTCAACAAATATTC
*
3017402 AATCACGTAAT
1 AGTCACGTAAT
3017413 ATTTAGGCAC
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 53 1.00
ACGTcount: A:0.40, C:0.27, G:0.10, T:0.22
Consensus pattern (48 bp):
AGTCACGTAATGCCTACAAACAAGTCACGCAACACTCAACAAATATTC
Found at i:3019205 original size:30 final size:29
Alignment explanation
Indices: 3019167--3019223 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 29
3019157 ATTAATTATA
*
3019167 AAAGTTTAT-TCGGTTTAAAATAAAAATAT
1 AAAGTTTATGT-GGTTCAAAATAAAAATAT
*
3019196 AAAGATTTATGTGGTTCAAAATATAAAT
1 AAAG-TTTATGTGGTTCAAAATAAAAAT
3019224 TATAGAGACG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 4 0.17
30 19 0.79
31 1 0.04
ACGTcount: A:0.47, C:0.04, G:0.12, T:0.37
Consensus pattern (29 bp):
AAAGTTTATGTGGTTCAAAATAAAAATAT
Found at i:3031975 original size:3 final size:3
Alignment explanation
Indices: 3031964--3031997 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
3031954 CAGCAGGAAC
*
3031964 AAG AA- AAG AAG AAG AAG AAG CAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
3031998 AAGTGGTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 26 0.93
ACGTcount: A:0.68, C:0.03, G:0.29, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:3038276 original size:14 final size:14
Alignment explanation
Indices: 3038257--3038286 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
3038247 CTCATATAAC
3038257 AGACCCTATGTAAT
1 AGACCCTATGTAAT
3038271 AGACCCTATGTAAT
1 AGACCCTATGTAAT
3038285 AG
1 AG
3038287 GAAAAGGCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.27
Consensus pattern (14 bp):
AGACCCTATGTAAT
Found at i:3060348 original size:16 final size:16
Alignment explanation
Indices: 3060329--3060386 Score: 64
Period size: 16 Copynumber: 3.6 Consensus size: 16
3060319 TTAAGGAAGT
3060329 AAAAAGAAAAAG-AAA
1 AAAAAGAAAAAGAAAA
*
3060344 AAAAAGAAGAAAGAAAG
1 AAAAAGAA-AAAGAAAA
* *
3060361 AAAAAGAGAGAGAAAA
1 AAAAAGAAAAAGAAAA
*
3060377 AAAAGGAAAA
1 AAAAAGAAAA
3060387 GTGAGAAAAA
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
15 8 0.24
16 17 0.50
17 9 0.26
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (16 bp):
AAAAAGAAAAAGAAAA
Found at i:3060381 original size:21 final size:21
Alignment explanation
Indices: 3060335--3060398 Score: 64
Period size: 20 Copynumber: 3.1 Consensus size: 21
3060325 AAGTAAAAAG
3060335 AAAAAGAAAAA-A-A-AGAAGA
1 AAAAAGAAAAAGAGAGAGAA-A
3060354 AAGAAAGAAAAAGAGAGAGAAA
1 AA-AAAGAAAAAGAGAGAGAAA
* *
3060376 AAAAAGGAAAAGTGAGA-AAA
1 AAAAAGAAAAAGAGAGAGAAA
3060396 AAA
1 AAA
3060399 CTAAAATGAC
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
19 2 0.05
20 15 0.38
21 14 0.36
22 4 0.10
23 4 0.10
ACGTcount: A:0.77, C:0.00, G:0.22, T:0.02
Consensus pattern (21 bp):
AAAAAGAAAAAGAGAGAGAAA
Found at i:3062534 original size:17 final size:17
Alignment explanation
Indices: 3062512--3062544 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
3062502 CAAAAACATT
3062512 TTTCATT-TTGATAAGAA
1 TTTCATTATTG-TAAGAA
3062529 TTTCATTATTGTAAGA
1 TTTCATTATTGTAAGA
3062545 GCTCAGATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.80
18 3 0.20
ACGTcount: A:0.33, C:0.06, G:0.12, T:0.48
Consensus pattern (17 bp):
TTTCATTATTGTAAGAA
Found at i:3074244 original size:55 final size:55
Alignment explanation
Indices: 3074160--3074380 Score: 291
Period size: 55 Copynumber: 4.0 Consensus size: 55
3074150 TAAACATGTA
* * * *
3074160 ATCATCCACGGGTCATCAGCTCATGTGCACTCCTATACCGCAAATAGCTGGAATT
1 ATCATCCACTGGTCATCAGCTCATGTGCACTCCTACACCGCACATAGCTGGAATC
* * * * *
3074215 ATCATCCACTAGTCATTAGCTTATGTGCACTCCTATACCGCACATAGCTGAAATC
1 ATCATCCACTGGTCATCAGCTCATGTGCACTCCTACACCGCACATAGCTGGAATC
* *
3074270 ATCATCCACCGGTCATCAGCTCATGTGCACTCCTACACCACACATAGCTGGAATC
1 ATCATCCACTGGTCATCAGCTCATGTGCACTCCTACACCGCACATAGCTGGAATC
* * * *
3074325 ATCATCCA-TCGGTCATCAACTCATGTGCACTCCCACACCGCATATAGTTGGAATC
1 ATCATCCACT-GGTCATCAGCTCATGTGCACTCCTACACCGCACATAGCTGGAATC
3074380 A
1 A
3074381 CCCGTCATCA
Statistics
Matches: 145, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
55 145 1.00
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.25
Consensus pattern (55 bp):
ATCATCCACTGGTCATCAGCTCATGTGCACTCCTACACCGCACATAGCTGGAATC
Found at i:3084069 original size:18 final size:18
Alignment explanation
Indices: 3084048--3084083 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
3084038 ATTGGTGTCT
*
3084048 ATCTCAAGAGTGATTTTA
1 ATCTCAAGAGTCATTTTA
3084066 ATCTCAAGAGTCATTTTA
1 ATCTCAAGAGTCATTTTA
3084084 GTAGTGTGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (18 bp):
ATCTCAAGAGTCATTTTA
Found at i:3086060 original size:27 final size:27
Alignment explanation
Indices: 3086018--3086094 Score: 127
Period size: 27 Copynumber: 2.9 Consensus size: 27
3086008 GATCCTACTG
* *
3086018 TGTTACACGTTGATGCATGAATCACCT
1 TGTTACACGTTAATGCATGAATCACCC
*
3086045 TGTTACATGTTAATGCATGAATCACCC
1 TGTTACACGTTAATGCATGAATCACCC
3086072 TGTTACACGTTAATGCATGAATC
1 TGTTACACGTTAATGCATGAATC
3086095 GCTTCAATAG
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.34
Consensus pattern (27 bp):
TGTTACACGTTAATGCATGAATCACCC
Found at i:3086148 original size:27 final size:27
Alignment explanation
Indices: 3086108--3086172 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
3086098 TCAATAGTAG
** *
3086108 TTGTTACACACTAAGGCATAAATCACT
1 TTGTTACATGCTAAGGCAGAAATCACT
*
3086135 TTGTTACATGCTAAGGCAGAAATTACT
1 TTGTTACATGCTAAGGCAGAAATCACT
3086162 TTGTTACATGC
1 TTGTTACATGC
3086173 CAAGCCATCT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.34
Consensus pattern (27 bp):
TTGTTACATGCTAAGGCAGAAATCACT
Found at i:3090438 original size:30 final size:30
Alignment explanation
Indices: 3090404--3090498 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
3090394 ATTAATAAAT
3090404 TTTAATGAAAAATTTATTTTGATTGCTTAA
1 TTTAATGAAAAATTTATTTTGATTGCTTAA
** **
3090434 TTTAAT--TTAATTTATTTT-ATTTTTTATAA
1 TTTAATGAAAAATTTATTTTGA-TTGCT-TAA
*
3090463 NTTAATGAAAAATTTATTTTGATTGCTTAA
1 TTTAATGAAAAATTTATTTTGATTGCTTAA
3090493 TTTAAT
1 TTTAAT
3090499 TTAATTTATT
Statistics
Matches: 50, Mismatches: 10, Indels: 10
0.71 0.14 0.14
Matches are distributed among these distances:
27 1 0.02
28 13 0.26
29 8 0.16
30 14 0.28
31 13 0.26
32 1 0.02
ACGTcount: A:0.35, C:0.02, G:0.06, T:0.56
Consensus pattern (30 bp):
TTTAATGAAAAATTTATTTTGATTGCTTAA
Found at i:3090574 original size:20 final size:18
Alignment explanation
Indices: 3090536--3090576 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
3090526 AATGTTAAAA
3090536 TATTCAAAATTTATAATT
1 TATTCAAAATTTATAATT
*
3090554 TATTTAAAATATTAGTAATT
1 TATTCAAAAT-TTA-TAATT
3090574 TAT
1 TAT
3090577 AGTTAAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 9 0.45
19 3 0.15
20 8 0.40
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (18 bp):
TATTCAAAATTTATAATT
Found at i:3092928 original size:22 final size:23
Alignment explanation
Indices: 3092883--3092928 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
3092873 AATCAAGCCA
*
3092883 AAGTAAGTTTGATTTTTTCAATT
1 AAGTAAGTTTGATGTTTTCAATT
* *
3092906 AAGTTAGTTTGA-GTTTTCGATT
1 AAGTAAGTTTGATGTTTTCAATT
3092928 A
1 A
3092929 GTTTAGACAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.28, C:0.04, G:0.17, T:0.50
Consensus pattern (23 bp):
AAGTAAGTTTGATGTTTTCAATT
Found at i:3094770 original size:11 final size:11
Alignment explanation
Indices: 3094742--3094776 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
3094732 TGTCATGGTA
*
3094742 TATTATTATTT
1 TATTATTTTTT
3094753 T-TTATTTTTT
1 TATTATTTTTT
3094763 TATTATTTTTT
1 TATTATTTTTT
3094774 TAT
1 TAT
3094777 ATATATTTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 9 0.41
11 13 0.59
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (11 bp):
TATTATTTTTT
Found at i:3095611 original size:47 final size:46
Alignment explanation
Indices: 3095516--3095611 Score: 113
Period size: 49 Copynumber: 2.0 Consensus size: 46
3095506 CCTTTGGCAC
* **
3095516 CGATTGGTTCTCTCCCTCTCTCTTTATACCTTTTCTCTTTTTGGCGT
1 CGATTGGTTCTCTCCCTCTCTCTTTATACCTTTCCTCCCTTT-GCGT
* *
3095563 CGATTGGTGCTCTCTCTCTCTCTCTTTATTCCTTTCCTCCCTTT-CGT
1 CGATTGGT--TCTCTCCCTCTCTCTTTATACCTTTCCTCCCTTTGCGT
3095610 CG
1 CG
3095612 GCCACTCTAG
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
47 13 0.31
49 29 0.69
ACGTcount: A:0.05, C:0.33, G:0.12, T:0.49
Consensus pattern (46 bp):
CGATTGGTTCTCTCCCTCTCTCTTTATACCTTTCCTCCCTTTGCGT
Found at i:3095807 original size:10 final size:10
Alignment explanation
Indices: 3095792--3095835 Score: 54
Period size: 10 Copynumber: 4.3 Consensus size: 10
3095782 CCAGCCATTG
3095792 TGTATTTTTT
1 TGTATTTTTT
3095802 TGTATTTTTCT
1 TGTATTTTT-T
*
3095813 T-TGATTTTTC
1 TGT-ATTTTTT
3095823 TGTATTTTTT
1 TGTATTTTTT
3095833 TGT
1 TGT
3095836 TTGAGAATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
10 20 0.69
11 9 0.31
ACGTcount: A:0.09, C:0.05, G:0.11, T:0.75
Consensus pattern (10 bp):
TGTATTTTTT
Found at i:3096189 original size:20 final size:22
Alignment explanation
Indices: 3096156--3096208 Score: 74
Period size: 20 Copynumber: 2.5 Consensus size: 22
3096146 ATTAATTTGT
3096156 ATTTTTATTGTATTATTTGATT-
1 ATTTTTATT-TATTATTTGATTA
*
3096178 A-TTTTATTTATTTTTTGATTA
1 ATTTTTATTTATTATTTGATTA
3096199 ATTTTTATTT
1 ATTTTTATTT
3096209 GGGGAATAGG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 11 0.39
21 8 0.29
22 9 0.32
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.72
Consensus pattern (22 bp):
ATTTTTATTTATTATTTGATTA
Found at i:3103644 original size:20 final size:20
Alignment explanation
Indices: 3103599--3103636 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
3103589 TTTTGGCCCC
*
3103599 ATTTGACTTATTGGTGTATA
1 ATTTGACTTATTGGAGTATA
3103619 ATTTGACTTATTGGAGTA
1 ATTTGACTTATTGGAGTA
3103637 AGATTTGAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.05, G:0.21, T:0.47
Consensus pattern (20 bp):
ATTTGACTTATTGGAGTATA
Found at i:3106172 original size:15 final size:16
Alignment explanation
Indices: 3106152--3106192 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 16
3106142 CAGATATTTT
3106152 GATTTTAAAG-CATTG
1 GATTTTAAAGTCATTG
*
3106167 GATTTTAAAGTCTTTG
1 GATTTTAAAGTCATTG
3106183 G-TTTTAAAGT
1 GATTTTAAAGT
3106193 TATTTTAAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 19 0.79
16 5 0.21
ACGTcount: A:0.29, C:0.05, G:0.20, T:0.46
Consensus pattern (16 bp):
GATTTTAAAGTCATTG
Found at i:3106256 original size:5 final size:5
Alignment explanation
Indices: 3106235--3106270 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
3106225 CTCCAAGTCC
* *
3106235 AGTTA AGTTA GGATA AGTTA AGTTA AGTTA AGTTA A
1 AGTTA AGTTA AGTTA AGTTA AGTTA AGTTA AGTTA A
3106271 ATTAGGTTAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.42, C:0.00, G:0.22, T:0.36
Consensus pattern (5 bp):
AGTTA
Found at i:3106279 original size:15 final size:15
Alignment explanation
Indices: 3106235--3106279 Score: 63
Period size: 15 Copynumber: 3.0 Consensus size: 15
3106225 CTCCAAGTCC
*
3106235 AGTTAAGTTAGGATA
1 AGTTAAGTTAGGTTA
*
3106250 AGTTAAGTTAAGTTA
1 AGTTAAGTTAGGTTA
*
3106265 AGTTAAATTAGGTTA
1 AGTTAAGTTAGGTTA
3106280 GATTTAATAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.40, C:0.00, G:0.22, T:0.38
Consensus pattern (15 bp):
AGTTAAGTTAGGTTA
Found at i:3110266 original size:20 final size:20
Alignment explanation
Indices: 3110241--3110286 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
3110231 TTTTGACCCT
*
3110241 ATTTGACTTATTGGAGTATA
1 ATTTGACTTATTGGAGTAAA
3110261 ATTTGACTTATTGGAGTAAA
1 ATTTGACTTATTGGAGTAAA
3110281 ATTTGA
1 ATTTGA
3110287 GGTTTAGAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.33, C:0.04, G:0.20, T:0.43
Consensus pattern (20 bp):
ATTTGACTTATTGGAGTAAA
Found at i:3122058 original size:15 final size:16
Alignment explanation
Indices: 3122040--3122069 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
3122030 ATTCATTTGC
3122040 TTATTA-TTTTCTTTA
1 TTATTATTTTTCTTTA
3122055 TTATTATTTTTCTTT
1 TTATTATTTTTCTTT
3122070 TCTTTACTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.77
Consensus pattern (16 bp):
TTATTATTTTTCTTTA
Found at i:3122318 original size:17 final size:17
Alignment explanation
Indices: 3122291--3122334 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 17
3122281 CTAAAGACTA
3122291 AAAATTAAAATAAGAAT-G
1 AAAA-TAAAATAA-AATGG
3122309 AAAATAAAATAAAATGG
1 AAAATAAAATAAAATGG
*
3122326 AGAATAAAA
1 AAAATAAAA
3122335 GGAAAGATGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 3 0.12
17 17 0.71
18 4 0.17
ACGTcount: A:0.70, C:0.00, G:0.11, T:0.18
Consensus pattern (17 bp):
AAAATAAAATAAAATGG
Found at i:3138044 original size:2 final size:2
Alignment explanation
Indices: 3138039--3138095 Score: 53
Period size: 2 Copynumber: 27.5 Consensus size: 2
3138029 TAACACACTC
* * *
3138039 TA TA TA TA TA TA TA TA TA TA NA CCA -A CA CTA CTA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA -TA TA TA TA TA
3138081 TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA T
3138096 CTTATAGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
1 1 0.02
2 43 0.88
3 5 0.10
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.42
Consensus pattern (2 bp):
TA
Found at i:3143114 original size:501 final size:494
Alignment explanation
Indices: 3141871--3143646 Score: 2096
Period size: 501 Copynumber: 3.5 Consensus size: 494
3141861 TATTTTTATC
* * * ** *
3141871 ACTTGTTACGTTAACTATCACACATTTACGTTAAGATTTTAAATTTGCTTATTCCACTTTTATAA
1 ACTTATTACGTTAACTCTCACACATTTACGTTAAGATTTAAAATTTAATTATTCCACCTTTATAA
** * * * * * * *
3141936 GATTTTACATTAATTCTTACAATTTTATGCCAAACCTTTTCAATAG-CAACTTTTAACTATAATT
66 G-TTTTATGTCAATTATTACAGTTTTACGTCAAGCTTTTTC--TAGTCAA-TTTTAACTATAATT
3142000 ATCTTTATCTTTATTATTCTTTATTTAAAATAAAAATTTGAATATCGTTACATACTTTTAGCCCG
127 ATCTTTATCTTTATTATTCTTTATTTAAAATAAAAATTTGAATATCGTTACATACTTTTAGCCCG
* *
3142065 ATAATATAAATATAAATGCTTATTTTTCATTAAAATTAGACTTTTTTACTTAATGAACTTATTAT
192 ATAATATAAATATAAAT-CTTATTTTTCATTAAAATTAGACTTTTTTACTTAATTAACTTATTAC
* * * *
3142130 GTTAACTCTCACACATTTACGTTAAGATTTAAAATTTAATTATTCCACCTTTATAAGTTTTTATG
256 GTTAACT-TTACAAATTTACGTTAAGATTTAAAATTTAGTTATTCCACCTTTATAAGTTTTTACG
* * * * * * **
3142195 TTAATTGTTACAGTTTTACGTCAAGATTTATCTATATCAATTTTGAACTATAATTATTTTTATTT
320 TCAATTCTTACAATTTTACGTCAAGACTTATCTATGTCAATTTTAAACTATAATTATTTTTATCC
* * * *
3142260 TTATTATTCTTTATTTAAAAATTAAAATTTATATATCATTAAATACTTTTAGCCAGAGAATATAT
385 TTATTATT-TTTATTTAAAAATTAAAATTTATATATCGTTAAATACTTTTAGTCTGAGAATATAA
* * *
3142325 TTTTAAATATTTATTTTTCACTAAAATTAGATTTTTTTTACTTAATTG
449 ATTTAAATATTTA-TTTTCAATTAAATTAGA-TTTTTTTACTTAATTG
* * * * ** **
3142373 ACTTGTTACGTTAACTCTCACACATTTACGCTAAAATTTTAAATTTGCTTATTCCATTTTTATAA
1 ACTTATTACGTTAACTCTCACACATTTACGTTAAGATTTAAAATTTAATTATTCCACCTTTAT-A
* * * * * * *
3142438 AATTTTATATTAATTCTTACAATTTTACGTCAAGCCTTTTCAATAAT-AACTTTTAACTATAATT
65 AGTTTTATGTCAATTATTACAGTTTTACGTCAAGCTTTTTC--TAGTCAA-TTTTAACTATAATT
* **
3142502 ATCTTTATCTTTATTATTCTTTATTTAAAATAAAAATTTGAATATCGTTATATACTTTTAGTTCG
127 ATCTTTATCTTTATTATTCTTTATTTAAAATAAAAATTTGAATATCGTTACATACTTTTAGCCCG
*
3142567 ATAATATAAATATAAACGCTTATTTTT-ATTAAAATTAGACTTTTTTACTTAATTAACTTATTAC
192 ATAATATAAATATAAA-TCTTATTTTTCATTAAAATTAGACTTTTTTACTTAATTAACTTATTAC
* * *
3142631 GTTAACTGTTACAAATTTATGTTAAGATTTAAAATTTAGTTATTCCACCTTTAGAAGTTTTTACA
256 GTTAACT-TTACAAATTTACGTTAAGATTTAAAATTTAGTTATTCCACCTTTATAAGTTTTTACG
* * *
3142696 TCAATTCTTACAATTTTACGTTAAGGCTTATCTATGTCAATATTAAACTATAATTATTTTTATCC
320 TCAATTCTTACAATTTTACGTCAAGACTTATCTATGTCAATTTTAAACTATAATTATTTTTATCC
* * * *
3142761 TTATTATTTTTATTTAAAAATTATAATCTGTATATCGTTAAATACTTTTATTCTGAGAATATAAA
385 TTATTATTTTTATTTAAAAATTAAAATTTATATATCGTTAAATACTTTTAGTCTGAGAATATAAA
3142826 TTTAAATATTTGATTTTCAATTAAATTA-ATATTTTTTACTTAATTG
450 TTTAAATATTT-ATTTTCAATTAAATTAGAT-TTTTTTACTTAATTG
* * **
3142872 ACTTATTATGTTAACTCTCACACATTTATGTTAAGATTTAAAATTTAATTATTTTACCTTTATAA
1 ACTTATTACGTTAACTCTCACACATTTACGTTAAGATTTAAAATTTAATTATTCCACCTTTATAA
* * ** *
3142937 GTCTTTACGTCAATTATTATAGTTTTACGTCAAAATTTTTCTACGTCCATTTTGAACTATAATTA
66 GT-TTTATGTCAATTATTACAGTTTTACGTCAAGCTTTTTCTA-GTCAATTTT-AACTATAATTA
* * ** * * * **
3143002 TTTTTATCCTTATTATTCTTTATTTAAAAATTCAAATTTGTATATTGTTGA-ACACTTTTAATCC
128 TCTTTATCTTTATTATTCTTTATTT-AAAATAAAAATTTGAATATCGTT-ACATACTTTTAGCCC
* * * * * * * * * *
3143066 AAAAATATAAATTTAAATATTTTTTTTCACTAAAATTAGATTTTTTTTACTTAATTGATTTGTTA
191 GATAATATAAATATAAATCTTATTTTTCATTAAAATTAGA-CTTTTTTACTTAATTAACTTATTA
* *
3143131 CGTTAATTTTCACACATTTACGTTAAGATTTAAAATTTAGTTATTCCACCTTTATAAGTTTTTAC
255 CGTTAACTTT-ACAAATTTACGTTAAGATTTAAAATTTAGTTATTCCACCTTTATAAGTTTTTAC
*
3143196 GTCAATTCTTACAATTTTACGTCAAGACATATCTATGTCAATTTTAAACTATAATTATTTTTATC
319 GTCAATTCTTACAATTTTACGTCAAGACTTATCTATGTCAATTTTAAACTATAATTATTTTTATC
* * *
3143261 CTCATTATTTTTATTTAAAAATTAAAATTTATATATAGTTACATACTTTTAGTCTG-GTAATATA
384 CTTATTATTTTTATTTAAAAATTAAAATTTATATATCGTTAAATACTTTTAGTCTGAG-AATATA
** ** *
3143325 AATACAAATGCTTATTTTC-ATTAAAATTAGATTTTTTTACTTAATTA
448 AATTTAAATATTTATTTTCAATT-AAATTAGATTTTTTTACTTAATTG
* * **
3143372 ACTTATTACGTTAACTCTTACACATTTACGTTAAGATTTACAATTTAGCTATTCCACCTTTATAA
1 ACTTATTACGTTAACTCTCACACATTTACGTTAAGATTTAAAATTTAATTATTCCACCTTTATAA
* * * *
3143437 GTTTTTATGTCAATTGTTACAGTTTTATGTCAAGGCTCTTT-TATGTCAATTTTGAATTATAATT
66 G-TTTTATGTCAATTATTACAGTTTTACGTCAA-GCTTTTTCTA-GTCAATTTT-AACTATAATT
* * *
3143501 ATTTTTATCTTTATTATTCTTTATTTAAAAGTCAAAATTTGAATATCATTACATACTTTTAGCCC
127 ATCTTTATCTTTATTATTCTTTATTTAAAA-TAAAAATTTGAATATCGTTACATACTTTTAGCCC
* * * * *
3143566 GATAATATAAATATAAATGTTTATTTTTCATTCAATTTA-ATTTTTTTTACTTAATTAACTTATA
191 GATAATATAAATATAAAT-CTTATTTTTCATTAAAATTAGA-CTTTTTTACTTAATTAACTTATT
*
3143630 ACATTAACTTT-CAAATT
254 ACGTTAACTTTACAAATT
3143647 GTCACGATCC
Statistics
Matches: 1099, Mismatches: 153, Indels: 48
0.85 0.12 0.04
Matches are distributed among these distances:
497 2 0.00
498 14 0.01
499 146 0.13
500 353 0.32
501 380 0.35
502 202 0.18
503 2 0.00
ACGTcount: A:0.34, C:0.12, G:0.06, T:0.48
Consensus pattern (494 bp):
ACTTATTACGTTAACTCTCACACATTTACGTTAAGATTTAAAATTTAATTATTCCACCTTTATAA
GTTTTATGTCAATTATTACAGTTTTACGTCAAGCTTTTTCTAGTCAATTTTAACTATAATTATCT
TTATCTTTATTATTCTTTATTTAAAATAAAAATTTGAATATCGTTACATACTTTTAGCCCGATAA
TATAAATATAAATCTTATTTTTCATTAAAATTAGACTTTTTTACTTAATTAACTTATTACGTTAA
CTTTACAAATTTACGTTAAGATTTAAAATTTAGTTATTCCACCTTTATAAGTTTTTACGTCAATT
CTTACAATTTTACGTCAAGACTTATCTATGTCAATTTTAAACTATAATTATTTTTATCCTTATTA
TTTTTATTTAAAAATTAAAATTTATATATCGTTAAATACTTTTAGTCTGAGAATATAAATTTAAA
TATTTATTTTCAATTAAATTAGATTTTTTTACTTAATTG
Found at i:3146349 original size:199 final size:198
Alignment explanation
Indices: 3146002--3146387 Score: 546
Period size: 199 Copynumber: 1.9 Consensus size: 198
3145992 TATTTTTTAT
*
3146002 TTAAAAATTAAAATTTATGTATCGTTAACTACTTTTAGCCCAAAAATATAAATTTAAATGTTATT
1 TTAAAAATTAAAATTTATATATCGTTAACTACTTTTAGCCCAAAAATATAAATTTAAATGTTATT
*
3146067 TTCACTAAAATTAGATTTTTTTTACTTAATTGACTTGTTACGTTAACTCCCACACATTTATGTTA
66 TTCACTAAAATTAGATTTTTTTTACTTAATTAACTTGTTACGTTAACTCCCACACATTTATGTTA
* * * * * *
3146132 AGATTTAAATTTTAGTTATTTCA-TCTTTATAAGTTTTTACGTCAATTGTTACAGTTTTATGTTC
131 AGATTAAAAATTTAGTTATTCCAGT-TTTATAAGTTTTTACATCAATTCTCACAGTTTTATGTTC
3146196 AAAC
195 AAAC
* * * * *
3146200 TTAAAAATTAAAATTTGTATATCGTTAAAC-ACTTTTAGTCCGAGAATATAAATTTAAATATTTA
1 TTAAAAATTAAAATTTATATATCGTT-AACTACTTTTAGCCCAAAAATATAAATTTAAAT-GTTA
* ** *
3146264 TTTTTCACTAAAATTAGA-TTTTTTTATTTAATTAACTTGTTACGTTAACTTTCACACGTTTACT
64 -TTTTCACTAAAATTAGATTTTTTTTACTTAATTAACTTGTTACGTTAACTCCCACACATTTA-T
3146328 -TTAAGATTAAAAATTTAGTTATTCCAGTTTTATAAGTTTTTACATCAATTCTCACAGTTT
127 GTTAAGATTAAAAATTTAGTTATTCCAGTTTTATAAGTTTTTACATCAATTCTCACAGTTT
3146388 AACGTTAAGA
Statistics
Matches: 166, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
198 50 0.30
199 97 0.58
200 19 0.11
ACGTcount: A:0.34, C:0.12, G:0.08, T:0.46
Consensus pattern (198 bp):
TTAAAAATTAAAATTTATATATCGTTAACTACTTTTAGCCCAAAAATATAAATTTAAATGTTATT
TTCACTAAAATTAGATTTTTTTTACTTAATTAACTTGTTACGTTAACTCCCACACATTTATGTTA
AGATTAAAAATTTAGTTATTCCAGTTTTATAAGTTTTTACATCAATTCTCACAGTTTTATGTTCA
AAC
Found at i:3146657 original size:249 final size:251
Alignment explanation
Indices: 3146200--3146858 Score: 932
Period size: 249 Copynumber: 2.6 Consensus size: 251
3146190 ATGTTCAAAC
*
3146200 TTAAAAATTAAAATTTGTATATCGTTAAACACTTTTAGTCCGAGAATATAAATTTAAATATTTAT
1 TTAAAAATTAAAATTTGTATATCGTTAAACACTTTTAGTTCGAGAATATAAATTTAAATATTTAT
* * * * *
3146265 TTTTCACTAAAATTAGATTTTTTTATTTAATTAACTTGTTACGTTAACTTTCACACGTTTACTTT
66 TTTTCACTAAAATTAGAATTTTTTACTTAATTGACTTGTTACGTTAACTTTCACACATTTACATT
** ** *
3146330 AAGATTAAAAATTTAGTTATTCCAGTTTTATAAGTTTTTACATCAATTCTCACAGTTTAACGTTA
131 AAGATTTTAAATTTAGTTATTCCACCTTTATAAGTTTTTACATCAATTCTCACAGTTTAACGTCA
* * *
3146395 AGAATTTTTTATGTTAATTTTGAATTATAATTATTTTTATCT-TTATTA-TTTTTAT
196 AGAATTATTTATGTCAATTTTGAACTATAATTATTTTTAT-TATTATTATTTTTTAT
* * * * * *
3146450 TTAAAAATT-AAATTTGTATATTGTTAAACTCTTTTAATTCAAGAATATAAATATAAATGTTTAT
1 TTAAAAATTAAAATTTGTATATCGTTAAACACTTTTAGTTCGAGAATATAAATTTAAATATTTAT
* * *
3146514 TTTTCGCTAAAATTAGAATTTTTTACTTAATTGACTTGTTATGTTAACTTTCACACATTTACGTT
66 TTTTCACTAAAATTAGAATTTTTTACTTAATTGACTTGTTACGTTAACTTTCACACATTTACATT
* * * *
3146579 AAGATTTTAAATTTAGTTATTCCACCTTTATAAGTTTTTACGTCAATTGTTACAGTTTTACGTCA
131 AAGATTTTAAATTTAGTTATTCCACCTTTATAAGTTTTTACATCAATTCTCACAGTTTAACGTCA
**
3146644 AGGCTTATTTATGTCAATTTTGAACTATAATTATTTTTATTATTATTATTTTTTAT
196 AGAATTATTTATGTCAATTTTGAACTATAATTATTTTTATTATTATTATTTTTTAT
* *
3146700 TTAAAAATTAAAATTTGTATATCGTTAAACAATTTTAGCTCGAGAATATAAATTTAAATATTTAT
1 TTAAAAATTAAAATTTGTATATCGTTAAACACTTTTAGTTCGAGAATATAAATTTAAATATTTAT
* * * *
3146765 TTTTCATTAAAA-TA-AATTTTTTTTCTTTAATTGACTTATTACGTTAACTTTTACACATTTACA
66 TTTTCACTAAAATTAGAA-TTTTTTAC-TTAATTGACTTGTTACGTTAACTTTCACACATTTACA
*
3146828 TTAAGATTTTAAATTTAGTTATTCTACCTTT
129 TTAAGATTTTAAATTTAGTTATTCCACCTTT
3146859 CGAGTTTTTT
Statistics
Matches: 360, Mismatches: 44, Indels: 9
0.87 0.11 0.02
Matches are distributed among these distances:
248 1 0.00
249 205 0.57
250 34 0.09
251 120 0.33
ACGTcount: A:0.34, C:0.09, G:0.07, T:0.49
Consensus pattern (251 bp):
TTAAAAATTAAAATTTGTATATCGTTAAACACTTTTAGTTCGAGAATATAAATTTAAATATTTAT
TTTTCACTAAAATTAGAATTTTTTACTTAATTGACTTGTTACGTTAACTTTCACACATTTACATT
AAGATTTTAAATTTAGTTATTCCACCTTTATAAGTTTTTACATCAATTCTCACAGTTTAACGTCA
AGAATTATTTATGTCAATTTTGAACTATAATTATTTTTATTATTATTATTTTTTAT
Found at i:3151709 original size:39 final size:39
Alignment explanation
Indices: 3151655--3151734 Score: 108
Period size: 39 Copynumber: 2.1 Consensus size: 39
3151645 TTAACAGGTA
*
3151655 AACAACATAACTAATTTATAAATTTATCCATTTTATGTT
1 AACAACATAACTAATTTATAAACTTATCCATTTTATGTT
* * *
3151694 AACAACATAGA-TAATTTTTAAACTTATCTATTTTATTTT
1 AACAACATA-ACTAATTTATAAACTTATCCATTTTATGTT
3151733 AA
1 AA
3151735 ATGTTATTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
39 35 0.97
40 1 0.03
ACGTcount: A:0.41, C:0.11, G:0.03, T:0.45
Consensus pattern (39 bp):
AACAACATAACTAATTTATAAACTTATCCATTTTATGTT
Found at i:3155297 original size:20 final size:20
Alignment explanation
Indices: 3155268--3155313 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
3155258 TTTTGACCCC
*
3155268 ATTTGACTTATTGGGGTATA
1 ATTTGACTTATTGGAGTATA
* *
3155288 ATTTGTCTTATTGGAGTATG
1 ATTTGACTTATTGGAGTATA
3155308 ATTTGA
1 ATTTGA
3155314 GTTTAGAAGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.24, C:0.04, G:0.24, T:0.48
Consensus pattern (20 bp):
ATTTGACTTATTGGAGTATA
Found at i:3162822 original size:20 final size:20
Alignment explanation
Indices: 3162781--3162836 Score: 76
Period size: 20 Copynumber: 2.7 Consensus size: 20
3162771 TATACTTACT
*
3162781 AATATACTAATTAGTCAATAAC
1 AATATACT-ATTA-TAAATAAC
*
3162803 AATTTACTATTATAAATAAC
1 AATATACTATTATAAATAAC
3162823 AATATACTATTATA
1 AATATACTATTATA
3162837 TAGTATATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
20 20 0.65
21 4 0.13
22 7 0.23
ACGTcount: A:0.50, C:0.11, G:0.02, T:0.38
Consensus pattern (20 bp):
AATATACTATTATAAATAAC
Found at i:3162899 original size:19 final size:21
Alignment explanation
Indices: 3162875--3162913 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 21
3162865 ATACTTAAAT
3162875 ACTATATA-AGTAA-ATATTG
1 ACTATATATAGTAATATATTG
3162894 ACTATATATAGTAATATATT
1 ACTATATATAGTAATATATT
3162914 AATACACAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 8 0.44
20 5 0.28
21 5 0.28
ACGTcount: A:0.46, C:0.05, G:0.08, T:0.41
Consensus pattern (21 bp):
ACTATATATAGTAATATATTG
Found at i:3162964 original size:24 final size:23
Alignment explanation
Indices: 3162936--3163107 Score: 88
Period size: 24 Copynumber: 7.3 Consensus size: 23
3162926 ATTGTATTAG
3162936 TATATAGTT-ATACACTATATATAA
1 TATATA-TTAATACA-TATATATAA
*
3162960 TATATATTAATACA-ATATA-CA
1 TATATATTAATACATATATATAA
* *
3162981 TATATACTATATA-ATTATATATAG
1 TATATATTA-ATACA-TATATATAA
* **
3163005 TAAATATTAATACAGTATATATTG
1 TATATATTAATACA-TATATATAA
*
3163029 TTTATAGTT-ATACAT-TATATAA
1 TATATA-TTAATACATATATATAA
* *
3163051 TATATATCTTAATACACTACATATAG
1 TATATA--TTAATACA-TATATATAA
* *
3163077 TATACTTATTAATA-ACTTTATATAC
1 TATA--TATTAATACA-TATATATAA
3163102 TATATA
1 TATATA
3163108 ACAAGTATAA
Statistics
Matches: 116, Mismatches: 19, Indels: 27
0.72 0.12 0.17
Matches are distributed among these distances:
21 10 0.09
22 18 0.16
23 15 0.13
24 41 0.35
25 15 0.13
26 15 0.13
28 2 0.02
ACGTcount: A:0.45, C:0.08, G:0.03, T:0.44
Consensus pattern (23 bp):
TATATATTAATACATATATATAA
Found at i:3162978 original size:15 final size:16
Alignment explanation
Indices: 3162951--3163027 Score: 63
Period size: 15 Copynumber: 5.1 Consensus size: 16
3162941 AGTTATACAC
*
3162951 TATATATAATATATAT
1 TATATACAATATATAT
*
3162967 TA-ATACAATATACA-
1 TATATACAATATATAT
*
3162981 TATATACTATATA-AT
1 TATATACAATATATAT
* * *
3162996 TATATATAGTAAATAT
1 TATATACAATATATAT
*
3163012 TA-ATACAGTATATAT
1 TATATACAATATATAT
3163027 T
1 T
3163028 GTTTATAGTT
Statistics
Matches: 49, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
14 3 0.06
15 40 0.82
16 6 0.12
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (16 bp):
TATATACAATATATAT
Found at i:3163115 original size:93 final size:92
Alignment explanation
Indices: 3162938--3163116 Score: 199
Period size: 93 Copynumber: 1.9 Consensus size: 92
3162928 TGTATTAGTA
*
3162938 TATAGTTATACACTATATATAATATATATTAATACAATATACATATATACTATATAATTATATAT
1 TATAGTTATACACTATATATAATATATATTAATACAATACACATATATACTATATAATTATATAT
* *
3163003 AGTAAATATTAATACAGTATATATTGTT
66 ACT-AATATTAACACAGTATATATTGTT
* *
3163031 TATAGTTATACA-T-TATATAATATATATCTTAATACACTACATATAGTATACTTATTAATAACT
1 TATAGTTATACACTATATATAATATATA--TTAATACAATACACATA-TATAC-TA-T-ATAA-T
3163094 T-TATATACT-ATA-TAACA-AGTATA
59 TATATATACTAATATTAACACAGTATA
3163117 ATTATTCAAA
Statistics
Matches: 74, Mismatches: 5, Indels: 14
0.80 0.05 0.15
Matches are distributed among these distances:
91 13 0.18
92 1 0.01
93 32 0.43
94 9 0.12
95 5 0.07
96 1 0.01
97 11 0.15
98 2 0.03
ACGTcount: A:0.45, C:0.08, G:0.04, T:0.42
Consensus pattern (92 bp):
TATAGTTATACACTATATATAATATATATTAATACAATACACATATATACTATATAATTATATAT
ACTAATATTAACACAGTATATATTGTT
Found at i:3167224 original size:24 final size:24
Alignment explanation
Indices: 3167191--3167262 Score: 90
Period size: 24 Copynumber: 3.0 Consensus size: 24
3167181 AATATATCTT
*
3167191 TGTCCCCCTGAAGTGGTGATAGAC
1 TGTCCCCCTGAAGCGGTGATAGAC
* * *
3167215 TGTCCTCCTGAAGCGGGGATAAAC
1 TGTCCCCCTGAAGCGGTGATAGAC
* *
3167239 TATCCCCCTGAAGCAGTGATAGAC
1 TGTCCCCCTGAAGCGGTGATAGAC
3167263 CTTTGAGAAC
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.22
Consensus pattern (24 bp):
TGTCCCCCTGAAGCGGTGATAGAC
Found at i:3168464 original size:25 final size:25
Alignment explanation
Indices: 3168436--3168487 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 25
3168426 AATTTTTACT
* *
3168436 TGACACCTGAAGTTGTTAATACAAG
1 TGACACATGAAGTTGTCAATACAAG
*
3168461 TGACACATGAAGTTGTCAATATAAG
1 TGACACATGAAGTTGTCAATACAAG
3168486 TG
1 TG
3168488 CAAATGGGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29
Consensus pattern (25 bp):
TGACACATGAAGTTGTCAATACAAG
Found at i:3173120 original size:27 final size:24
Alignment explanation
Indices: 3173090--3173141 Score: 59
Period size: 24 Copynumber: 2.0 Consensus size: 24
3173080 ATTTTTAATG
*
3173090 ATTTCTAACAAACAATAATTTTTTTTA
1 ATTTC-AACAAA-AA-AATTTTATTTA
*
3173117 ATTTCAATAAAAAAATTTTATTTA
1 ATTTCAACAAAAAAATTTTATTTA
3173141 A
1 A
3173142 ATATTTAAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 11 0.48
25 2 0.09
26 5 0.22
27 5 0.22
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (24 bp):
ATTTCAACAAAAAAATTTTATTTA
Found at i:3173166 original size:210 final size:212
Alignment explanation
Indices: 3172740--3173166 Score: 675
Period size: 210 Copynumber: 2.0 Consensus size: 212
3172730 GTCAAAATAA
*
3172740 TTAATAAAATTACATATTCTCTCACTTTCTCAATTATTTGCCTAATAAATCTCTATTTTTTATCA
1 TTAATAAAATTACATATTCTCTCACTTTCTCAATTATTTGCCTAATAAATCTCTATTTTCTATCA
*
3172805 CTTCCTAATTTTCATAATGCTAATAATTCTCAATTATTTTTTCTATTTTCAATGAACGTAATATG
66 CTTCCTAATTTTCA-AATGCTAATAATTCTCAATTATTTTTTCTATTTTCAATGAACGTAATATA
* *
3172870 TTTTTAATGATTTCCAACTAACCATAATTTTTTTAAATTTCAATAAAAAAGATTTCATTTAAATA
130 TTTTTAATGATTTCCAACAAACAATAATTTTTTTAAATTTCAATAAAAAAGATTTCATTTAAATA
3172935 TTTAAGCACTTTAGTTTT
195 TTTAAGCACTTTAGTTTT
*
3172953 TTAATAAAATTACATATTCTCTCACTTTCTTAATTATTTGCCTAATAAATCTCTATTTTCTATCA
1 TTAATAAAATTACATATTCTCTCACTTTCTCAATTATTTGCCTAATAAATCTCTATTTTCTATCA
* * * *
3173018 CTT-TTCAA-TTTC-CATGCTAATAATTCTTAATTATTTTTTCTATTTTCAATGAAATGTAATAT
66 CTTCCT-AATTTTCAAATGCTAATAATTCTCAATTATTTTTTCTATTTTCAATG-AACGTAATAT
* * *
3173080 ATTTTTAATGATTTCTAACAAACAATAATTTTTTTTAATTTCAATAAAAAA-ATTTTATTTAAAT
129 ATTTTTAATGATTTCCAACAAACAATAATTTTTTTAAATTTCAATAAAAAAGATTTCATTTAAAT
3173144 ATTTAAGCACTTTA-TATTT
194 ATTTAAGCACTTTAGT-TTT
3173163 TTAA
1 TTAA
3173167 AAATATTGAG
Statistics
Matches: 199, Mismatches: 12, Indels: 9
0.90 0.05 0.04
Matches are distributed among these distances:
209 1 0.01
210 70 0.35
211 55 0.28
212 5 0.03
213 68 0.34
ACGTcount: A:0.35, C:0.13, G:0.04, T:0.48
Consensus pattern (212 bp):
TTAATAAAATTACATATTCTCTCACTTTCTCAATTATTTGCCTAATAAATCTCTATTTTCTATCA
CTTCCTAATTTTCAAATGCTAATAATTCTCAATTATTTTTTCTATTTTCAATGAACGTAATATAT
TTTTAATGATTTCCAACAAACAATAATTTTTTTAAATTTCAATAAAAAAGATTTCATTTAAATAT
TTAAGCACTTTAGTTTT
Found at i:3176105 original size:79 final size:80
Alignment explanation
Indices: 3175924--3176125 Score: 291
Period size: 79 Copynumber: 2.5 Consensus size: 80
3175914 TTGAGTTTAT
* * * * *
3175924 ATGAAATTCTCAACACATATATCTCATGGCATACATTTCATGATTTCATAAATCATTCCCATGCT
1 ATGATATTCTCAACACATACATCTCATGGCATACATGTCATAATCTCATAAATCATTCCCATGCT
*
3175989 TAGTCCATAATGTAC
66 TAGCCCATAATGTAC
*
3176004 ATGATATTCTCAACACATACATCTCATGGCATACATGTGATAATCTCATAAATCATT-CCATGCT
1 ATGATATTCTCAACACATACATCTCATGGCATACATGTCATAATCTCATAAATCATTCCCATGCT
*
3176068 TAGCCCATAGTGTAC
66 TAGCCCATAATGTAC
* **
3176083 ATGATATTCTCAACACAAACATCTCATAACATACAT-TCATAAT
1 ATGATATTCTCAACACATACATCTCATGGCATACATGTCATAAT
3176126 GCCGTAAATG
Statistics
Matches: 110, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
78 6 0.05
79 53 0.48
80 51 0.46
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.33
Consensus pattern (80 bp):
ATGATATTCTCAACACATACATCTCATGGCATACATGTCATAATCTCATAAATCATTCCCATGCT
TAGCCCATAATGTAC
Found at i:3177192 original size:20 final size:20
Alignment explanation
Indices: 3177167--3177240 Score: 69
Period size: 20 Copynumber: 3.7 Consensus size: 20
3177157 TCTACTTGCT
* *
3177167 ATCTATCGATTGATGTGTCC
1 ATCTATCGATAGATCTGTCC
*
3177187 ATCTATCAATAGATCTGGT-C
1 ATCTATCGATAGATCT-GTCC
* * *
3177207 ATTTATCGATAGATTTGACC
1 ATCTATCGATAGATCTGTCC
*
3177227 ATCTATCCATAGAT
1 ATCTATCGATAGAT
3177241 GTTCTTTAGT
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
19 1 0.02
20 40 0.93
21 2 0.05
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (20 bp):
ATCTATCGATAGATCTGTCC
Found at i:3182639 original size:14 final size:14
Alignment explanation
Indices: 3182620--3182648 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
3182610 AAGTAATAAA
3182620 GCACATATGTAGAT
1 GCACATATGTAGAT
3182634 GCACATATGTAGAT
1 GCACATATGTAGAT
3182648 G
1 G
3182649 TGCTTGTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (14 bp):
GCACATATGTAGAT
Found at i:3187361 original size:30 final size:29
Alignment explanation
Indices: 3187327--3187412 Score: 102
Period size: 30 Copynumber: 2.9 Consensus size: 29
3187317 ATAGAACCTC
3187327 TCTATCTTTTCAAAGCTTAGATAAAATTT
1 TCTATCTTTTCAAAGCTTAGATAAAATTT
* *
3187356 ATCTATCTTTTCAAAGCTAAGATAGAACTTT
1 -TCTATCTTTTCAAAGCTTAGATA-AAATTT
* *
3187387 TCTATTTTTTC-AAGATTGAGATAAAA
1 TCTATCTTTTCAAAGCTT-AGATAAAA
3187413 CCTTTAACTA
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
29 6 0.12
30 37 0.77
31 5 0.10
ACGTcount: A:0.36, C:0.13, G:0.09, T:0.42
Consensus pattern (29 bp):
TCTATCTTTTCAAAGCTTAGATAAAATTT
Found at i:3187397 original size:60 final size:64
Alignment explanation
Indices: 3187317--3187465 Score: 148
Period size: 60 Copynumber: 2.4 Consensus size: 64
3187307 TCACTAATAT
* * * *
3187317 ATAGAACCTCTCTATCTTTTCAAAGCTT-AGATAAAA-TTTATCTA-T-C-TTTTCAAAGCTAAG
1 ATAGAACTTTTCTATCTTTTC-AAGATTGAGATAAAACTTTAACTACTACTTTTTCAAAGCTAAG
* * *
3187377 ATAGAACTTTTCTATTTTTTCAAGATTGAGATAAAACCTTTAACTACTACTTTTTGAAGGCTAAG
1 ATAGAACTTTTCTATCTTTTCAAGATTGAGATAAAA-CTTTAACTACTACTTTTTCAAAGCTAAG
* *
3187442 GTAGAACTGTTTCTAT-ATTTCAAG
1 ATAGAACT-TTTCTATCTTTTCAAG
3187466 GTTTGATTCA
Statistics
Matches: 73, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
59 5 0.07
60 26 0.36
62 7 0.10
63 1 0.01
64 1 0.01
65 26 0.36
66 7 0.10
ACGTcount: A:0.34, C:0.15, G:0.11, T:0.40
Consensus pattern (64 bp):
ATAGAACTTTTCTATCTTTTCAAGATTGAGATAAAACTTTAACTACTACTTTTTCAAAGCTAAG
Found at i:3187534 original size:30 final size:30
Alignment explanation
Indices: 3187472--3187574 Score: 104
Period size: 30 Copynumber: 3.5 Consensus size: 30
3187462 CAAGGTTTGA
* *
3187472 TTCAAAGCTAAGATAGAAC--CTCTATCTT
1 TTCAAGGCTTAGATAGAACATCTCTATCTT
* * *
3187500 TTCAAGGCTTAGATAGAGCATCTTTATTTT
1 TTCAAGGCTTAGATAGAACATCTCTATCTT
* * *
3187530 TTCAAGACTAAGATAGAACCTCTCTATCTT
1 TTCAAGGCTTAGATAGAACATCTCTATCTT
3187560 TTCAAGG-TTGAGATA
1 TTCAAGGCTT-AGATA
3187575 AAACCTTTAA
Statistics
Matches: 59, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
28 16 0.27
29 1 0.02
30 42 0.71
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (30 bp):
TTCAAGGCTTAGATAGAACATCTCTATCTT
Found at i:3188910 original size:23 final size:23
Alignment explanation
Indices: 3188883--3188933 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
3188873 GTTTTGAGTT
** *
3188883 TGTGAAACGGCATGTTGGGAATG
1 TGTGAAACAACATGGTGGGAATG
*
3188906 TGTGACACAACATGGTGGGAATG
1 TGTGAAACAACATGGTGGGAATG
3188929 TGTGA
1 TGTGA
3188934 CACGATTGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.27, C:0.10, G:0.37, T:0.25
Consensus pattern (23 bp):
TGTGAAACAACATGGTGGGAATG
Found at i:3188934 original size:23 final size:23
Alignment explanation
Indices: 3188893--3188936 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
3188883 TGTGAAACGG
*
3188893 CATGTTGGGAATGTGTGACACAA
1 CATGGTGGGAATGTGTGACACAA
3188916 CATGGTGGGAATGTGTGACAC
1 CATGGTGGGAATGTGTGACAC
3188937 GATTGTGACA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.27, C:0.14, G:0.34, T:0.25
Consensus pattern (23 bp):
CATGGTGGGAATGTGTGACACAA
Done.