Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36364294
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2168405 characters in sequence are not A, C, G, or T
File 14 of 91
Found at i:4389864 original size:21 final size:20
Alignment explanation
Indices: 4389822--4389866 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
4389812 TCAAAATTTT
* **
4389822 AATTATTAATTAATTACTAG
1 AATTATTAATTAATCAAAAG
4389842 AATTATTAATCTAATCAAAAG
1 AATTATTAAT-TAATCAAAAG
4389863 AATT
1 AATT
4389867 TAGTCACATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.49, C:0.07, G:0.04, T:0.40
Consensus pattern (20 bp):
AATTATTAATTAATCAAAAG
Found at i:4390004 original size:16 final size:17
Alignment explanation
Indices: 4389973--4390008 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
4389963 ATTTACCATT
*
4389973 ATATATAATTTATATAC
1 ATATATAATGTATATAC
4389990 ATATAT-ATGTATATAC
1 ATATATAATGTATATAC
4390006 ATA
1 ATA
4390009 ATTTTTGATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.47, C:0.06, G:0.03, T:0.44
Consensus pattern (17 bp):
ATATATAATGTATATAC
Found at i:4390741 original size:204 final size:204
Alignment explanation
Indices: 4390343--4390740 Score: 604
Period size: 204 Copynumber: 1.9 Consensus size: 204
4390333 CTTTCAAAAA
* * *
4390343 ATATATATAATTTTTGTTATTGTAAATCATTAAAAATTATACATCTATAGTACATCAAATTTATC
1 ATATATATAATTTTTGTTATTGTAAATCATTAAAAATTATACATATAGAGAACATCAAATTTATC
* *
4390408 ATTATATATAATATATTATATATGTTTTATAAATAATTTTTGTTATTGTAAATCAATAAAAATTA
66 ATTATATATAATATATTATATATGTTTTACAAATAATTTTTGTTATCGTAAATCAATAAAAATTA
*
4390473 TGTATATATAGTACATCAATGTTATCATTATTTTTAAAAAGTTTCAAAGTTATCATTATATATAA
131 TGTACATATAGTACATCAATGTTATCATTATTTTTAAAAAGTTTCAAAGTTATCATTATATATAA
4390538 TTTATATAC
196 TTTATATAC
* *
4390547 ATATATTTAATTTTTGTTGTTGTAAATCATTAAAAATTATACATATAGAGAACATCAAATTTATC
1 ATATATATAATTTTTGTTATTGTAAATCATTAAAAATTATACATATAGAGAACATCAAATTTATC
* * *
4390612 ATTATGTATAATATATTATAT-T-TTTTACATATAATTTTTGTTATCGTAAGTCAATAAAAATTA
66 ATTATATATAATATATTATATATGTTTTACAAATAATTTTTGTTATCGTAAATCAATAAAAATTA
* * *
4390675 TGTACATATAGTATATCAAAT-TTATCATTATCTTTTATTGAAAGGTTTCAAATTTATCATTATA
131 TGTACATATAGTACATC-AATGTTATCATTAT-TTTTA---AAAAGTTTCAAAGTTATCATTATA
4390739 TA
191 TA
4390741 AATAAGTTTT
Statistics
Matches: 175, Mismatches: 14, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
202 62 0.35
203 9 0.05
204 80 0.46
206 24 0.14
ACGTcount: A:0.40, C:0.07, G:0.06, T:0.46
Consensus pattern (204 bp):
ATATATATAATTTTTGTTATTGTAAATCATTAAAAATTATACATATAGAGAACATCAAATTTATC
ATTATATATAATATATTATATATGTTTTACAAATAATTTTTGTTATCGTAAATCAATAAAAATTA
TGTACATATAGTACATCAATGTTATCATTATTTTTAAAAAGTTTCAAAGTTATCATTATATATAA
TTTATATAC
Found at i:4390840 original size:100 final size:100
Alignment explanation
Indices: 4390642--4390838 Score: 290
Period size: 100 Copynumber: 2.0 Consensus size: 100
4390632 TTTTTTACAT
* * *
4390642 ATAATTTTTGTTATCGTAAGTCAATAAAAATTATGTACATATAGTATATCAAATTTATCATTATC
1 ATAAGTTTTGTTATCGTAAATCAATAAAAATTATGTACATATAGTACATCAAATTTATCATTATC
* *
4390707 TTTTATTGAAAGGTTTCAAATTTATCATTATATAA
66 TTTTATTGAAAGGTTTCAAACTTAACATTATATAA
* * *
4390742 ATAAGTTTTGTTATTGTAAATCAATAAAAATTATTTATATATAGTACATCAAATTTATCATTAT-
1 ATAAGTTTTGTTATCGTAAATCAATAAAAATTATGTACATATAGTACATCAAATTTATCATTATC
* *
4390806 TTTT-TTGAAATGTTTCAAACTTAACATGATATA
66 TTTTATTGAAAGGTTTCAAACTTAACATTATATA
4390839 TATTTTACAT
Statistics
Matches: 87, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
98 25 0.29
99 4 0.05
100 58 0.67
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.45
Consensus pattern (100 bp):
ATAAGTTTTGTTATCGTAAATCAATAAAAATTATGTACATATAGTACATCAAATTTATCATTATC
TTTTATTGAAAGGTTTCAAACTTAACATTATATAA
Found at i:4390989 original size:198 final size:201
Alignment explanation
Indices: 4390737--4391116 Score: 550
Period size: 198 Copynumber: 1.9 Consensus size: 201
4390727 TTTATCATTA
*
4390737 TATAAATAAGTTTTGTTATTGTAAATCAATAAAAATTATTTATATATAGTACATCAAATTTATCA
1 TATAAATAAGTTTTGTTATTGTAAATCAATAAAAATTATGTATATATAGTACATCAAATTTATCA
* * *
4390802 TTA-TTTTTTTGAAATGTTTCAAACTTAACATGATATATATTTTACATACATATATAT-T-ATTT
66 TCATTTTTTTTGAAAAGTTTCAAACTTAACATGATATATAATTTACATACATATATATATAATTT
* * * * *
4390864 TTCTTTTTGTAAATCATTAAAAATTATGCATATATAGTACATAAAATTTATCTTATATATTATAT
131 TTCATATTGTAAATCAATAAAAATTATGCATACATACTACATAAAATTTATCTTATATATTATAT
4390929 ATATGT
196 ATATGT
* * * *
4390935 TATATATAATTTTTGTTATTGTAAATCAATAAAAATTATGTGTATATGGTACATCAAATTTATCA
1 TATAAATAAGTTTTGTTATTGTAAATCAATAAAAATTATGTATATATAGTACATCAAATTTATCA
* * * *
4391000 TCATTTTTTTTGAAAAGTTTCAAATTTATCATTATATATAATTTATATACATATATATATAATTT
66 TCATTTTTTTTGAAAAGTTTCAAACTTAACATGATATATAATTTACATACATATATATATAATTT
* * * *
4391065 TTGATATTGTAAATCAATATAAATTATGTATACATACTACATCAAATTTATC
131 TTCATATTGTAAATCAATAAAAATTATGCATACATACTACATAAAATTTATC
4391117 ATGAAATTAT
Statistics
Matches: 158, Mismatches: 21, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
198 62 0.39
199 48 0.30
200 1 0.01
201 47 0.30
ACGTcount: A:0.40, C:0.07, G:0.06, T:0.47
Consensus pattern (201 bp):
TATAAATAAGTTTTGTTATTGTAAATCAATAAAAATTATGTATATATAGTACATCAAATTTATCA
TCATTTTTTTTGAAAAGTTTCAAACTTAACATGATATATAATTTACATACATATATATATAATTT
TTCATATTGTAAATCAATAAAAATTATGCATACATACTACATAAAATTTATCTTATATATTATAT
ATATGT
Found at i:4391044 original size:17 final size:19
Alignment explanation
Indices: 4391022--4391064 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 19
4391012 AAAAGTTTCA
4391022 AATTTAT-CAT-TATATAT
1 AATTTATACATATATATAT
4391039 AATTTATATACATATATATAT
1 AA-TT-TATACATATATATAT
4391060 AATTT
1 AATTT
4391065 TTGATATTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
17 2 0.09
18 2 0.09
19 4 0.18
20 5 0.23
21 9 0.41
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (19 bp):
AATTTATACATATATATAT
Found at i:4391073 original size:118 final size:114
Alignment explanation
Indices: 4390907--4391118 Score: 307
Period size: 118 Copynumber: 1.8 Consensus size: 114
4390897 ATAGTACATA
** *
4390907 AAATTTATCTTATATATTATATATATGTTATATATAATTTTTGTTATTGTAAATCAATAAAAATT
1 AAATTTATCTTATATATTATATATACATTATATATAATTTTTGATATTGTAAATCAATAAAAATT
* * **
4390972 ATGTGTATATGGTACATCAAATTTATCATCATTTTTTTTGAAAAGTTTC
66 ATGTATACATACTACATCAAATTTATCATCATTTTTTTTGAAAAGTTTC
* *
4391021 AAATTTATCATTATATATAATTTATATACATATATATATAATTTTTGATATTGTAAATCAATATA
1 AAATTTATC-TTATATAT--TATATATACAT-TATATATAATTTTTGATATTGTAAATCAATAAA
4391086 AATTATGTATACATACTACATCAAATTTATCAT
62 AATTATGTATACATACTACATCAAATTTATCAT
4391119 GAAATTATAA
Statistics
Matches: 85, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
114 9 0.11
115 8 0.09
117 8 0.09
118 60 0.71
ACGTcount: A:0.40, C:0.07, G:0.06, T:0.47
Consensus pattern (114 bp):
AAATTTATCTTATATATTATATATACATTATATATAATTTTTGATATTGTAAATCAATAAAAATT
ATGTATACATACTACATCAAATTTATCATCATTTTTTTTGAAAAGTTTC
Found at i:4396253 original size:15 final size:15
Alignment explanation
Indices: 4396233--4396272 Score: 71
Period size: 15 Copynumber: 2.7 Consensus size: 15
4396223 ATTCTCCTTC
4396233 TGCAGCTCTTCATGG
1 TGCAGCTCTTCATGG
4396248 TGCAGCTCTTCATGG
1 TGCAGCTCTTCATGG
*
4396263 TGCATCTCTT
1 TGCAGCTCTT
4396273 ACTGCTCCTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.12, C:0.28, G:0.23, T:0.38
Consensus pattern (15 bp):
TGCAGCTCTTCATGG
Found at i:4396465 original size:24 final size:24
Alignment explanation
Indices: 4396438--4396552 Score: 110
Period size: 24 Copynumber: 4.9 Consensus size: 24
4396428 GCAAATGCAG
*
4396438 TCAATGAAGTTGGAGATCCAGCAA
1 TCAATGCAGTTGGAGATCCAGCAA
*
4396462 TCAATGCAGTTGGAGATCCAGCAG
1 TCAATGCAGTTGGAGATCCAGCAA
* * * *
4396486 GCGATGCAGATGTAGAT---GCAA
1 TCAATGCAGTTGGAGATCCAGCAA
* * *
4396507 TCAATGTAGTTGGAGATCCAGTAG
1 TCAATGCAGTTGGAGATCCAGCAA
* *
4396531 TTAATGTAGTTGGAGATCCAGC
1 TCAATGCAGTTGGAGATCCAGC
4396553 GGGCGATGCA
Statistics
Matches: 72, Mismatches: 16, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
21 15 0.21
24 57 0.79
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (24 bp):
TCAATGCAGTTGGAGATCCAGCAA
Found at i:4396542 original size:69 final size:69
Alignment explanation
Indices: 4396420--4396570 Score: 221
Period size: 69 Copynumber: 2.2 Consensus size: 69
4396410 GCAGACGAAT
* * *
4396420 ATGCAGATGCAAATGCAGTCAATGAAGTTGGAGATCCAGCAATCAATGCAGTTGGAGATCCAGCA
1 ATGCAGATGTAGATGCAATCAATGAAGTTGGAGATCCAGCAATCAATGCAGTTGGAGATCCAGCA
4396485 GGCG
66 GGCG
* * * * * *
4396489 ATGCAGATGTAGATGCAATCAATGTAGTTGGAGATCCAGTAGTTAATGTAGTTGGAGATCCAGCG
1 ATGCAGATGTAGATGCAATCAATGAAGTTGGAGATCCAGCAATCAATGCAGTTGGAGATCCAGCA
4396554 GGCG
66 GGCG
4396558 ATGCAGATGTAGA
1 ATGCAGATGTAGA
4396571 CGCAGTCACT
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
69 73 1.00
ACGTcount: A:0.32, C:0.15, G:0.30, T:0.23
Consensus pattern (69 bp):
ATGCAGATGTAGATGCAATCAATGAAGTTGGAGATCCAGCAATCAATGCAGTTGGAGATCCAGCA
GGCG
Found at i:4398157 original size:26 final size:26
Alignment explanation
Indices: 4398127--4398176 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
4398117 AACATTATTC
*
4398127 TGTATCATTTCCATATTATTCTTTAT
1 TGTATCATTTACATATTATTCTTTAT
4398153 TGTATCATTTACATATTATTCTTT
1 TGTATCATTTACATATTATTCTTT
4398177 GTATTCATTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.14, G:0.04, T:0.58
Consensus pattern (26 bp):
TGTATCATTTACATATTATTCTTTAT
Found at i:4398178 original size:23 final size:23
Alignment explanation
Indices: 4398120--4398185 Score: 73
Period size: 26 Copynumber: 2.8 Consensus size: 23
4398110 TAACATTAAC
*
4398120 ATTATTC--TGTATCATTTCCAT
1 ATTATTCTTTGTATCATTTACAT
4398141 ATTATTCTTTATTGTATCATTTACAT
1 ATTATTC--T-TTGTATCATTTACAT
4398167 ATTATTCTTTGTATTCATT
1 ATTATTCTTTGTA-TCATT
4398186 CATGTGATAA
Statistics
Matches: 38, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
21 7 0.18
23 5 0.13
24 6 0.16
26 20 0.53
ACGTcount: A:0.24, C:0.14, G:0.05, T:0.58
Consensus pattern (23 bp):
ATTATTCTTTGTATCATTTACAT
Found at i:4399071 original size:11 final size:11
Alignment explanation
Indices: 4399054--4399097 Score: 51
Period size: 11 Copynumber: 4.3 Consensus size: 11
4399044 TATGACCGGC
4399054 CAAAGGAA-AA
1 CAAAGGAAGAA
4399064 CAAAAGGAAGAA
1 C-AAAGGAAGAA
4399076 CAAAGGAAG-A
1 CAAAGGAAGAA
4399086 -AAA-GAAGAA
1 CAAAGGAAGAA
4399095 CAA
1 CAA
4399098 GAACCCTAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
8 4 0.13
9 4 0.13
10 4 0.13
11 15 0.50
12 3 0.10
ACGTcount: A:0.68, C:0.09, G:0.23, T:0.00
Consensus pattern (11 bp):
CAAAGGAAGAA
Found at i:4399254 original size:19 final size:21
Alignment explanation
Indices: 4399215--4399254 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
4399205 TTCTCCTTAT
*
4399215 TTTTCTTGGTTAAATTTCATG
1 TTTTCATGGTTAAATTTCATG
4399236 TTTTCATGG-TAAA-TTCATG
1 TTTTCATGGTTAAATTTCATG
4399255 GCTGGCCGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 6 0.33
20 4 0.22
21 8 0.44
ACGTcount: A:0.23, C:0.10, G:0.15, T:0.53
Consensus pattern (21 bp):
TTTTCATGGTTAAATTTCATG
Found at i:4405299 original size:40 final size:40
Alignment explanation
Indices: 4405244--4405323 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
4405234 CTACAAACAG
* * *
4405244 GTCACGCAATGCTCAACAAATATTTAGTCACGTAATGCCT
1 GTCACGCAACGCTCAACAAATATTCAATCACGTAATGCCT
4405284 GTCACGCAACGCTCAACAAATATTCAATCACGTAATGCCT
1 GTCACGCAACGCTCAACAAATATTCAATCACGTAATGCCT
4405324 ATAAAGAACT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.25
Consensus pattern (40 bp):
GTCACGCAACGCTCAACAAATATTCAATCACGTAATGCCT
Found at i:4405367 original size:48 final size:48
Alignment explanation
Indices: 4405285--4405573 Score: 215
Period size: 48 Copynumber: 5.7 Consensus size: 48
4405275 GTAATGCCTG
*
4405285 TCACGCAACGCTCAACAAATATTCAATCACGTAATGCCTATAAAGAAC
1 TCACGCAACGCTCAACAAATATTCAGTCACGTAATGCCTATAAAGAAC
* * * ** * *
4405333 TCACGCAATGCTCAACAAATATTTAGTCAGGTAAT-ATTCAGTCACGTAACTCC
1 TCACGCAACGCTCAACAAATATTCAGTCACGTAATGCCT-A-TAAAG-AA---C
* *
4405386 TGTCACGCAACACTTAACAAATATTCAGTCACGTAATGCCTATAAAGAAC
1 --TCACGCAACGCTCAACAAATATTCAGTCACGTAATGCCTATAAAGAAC
* * * * * *
4405436 TCACGCAATGCTCAACAAATATTCTA-TCAGGTAATATTCAGTCATGTAATG-CC
1 TCACGCAACGCTCAACAAATATTC-AGTCACGT-A-A-T--G-CCTATAAAGAAC
* * *
4405489 TGTCACGCAACGCTCAACAAATATTCATTCACGTAATACTTATAAAGAAC
1 --TCACGCAACGCTCAACAAATATTCAGTCACGTAATGCCTATAAAGAAC
* *
4405539 TCACGCAATGCTCAATAAATATTCAGTCACGTAAT
1 TCACGCAACGCTCAACAAATATTCAGTCACGTAAT
4405574 ATTCAGGCAC
Statistics
Matches: 186, Mismatches: 35, Indels: 40
0.71 0.13 0.15
Matches are distributed among these distances:
47 1 0.01
48 90 0.48
49 11 0.06
50 5 0.03
51 1 0.01
52 1 0.01
53 6 0.03
54 11 0.06
55 59 0.32
56 1 0.01
ACGTcount: A:0.38, C:0.24, G:0.12, T:0.26
Consensus pattern (48 bp):
TCACGCAACGCTCAACAAATATTCAGTCACGTAATGCCTATAAAGAAC
Found at i:4405441 original size:103 final size:103
Alignment explanation
Indices: 4405262--4405591 Score: 511
Period size: 103 Copynumber: 3.2 Consensus size: 103
4405252 ATGCTCAACA
*
4405262 AATATTTAGTCACGTAATGCCTGTCACGCAACGCTCAACAAATATTCAATCACGTAATGCCTATA
1 AATATTCAGTCACGTAATGCCTGTCACGCAACGCTCAACAAATATTCAATCACGTAATGCCTATA
4405327 AAGAACTCACGCAATGCTCAACAAATATTTAGTCAGGT
66 AAGAACTCACGCAATGCTCAACAAATATTTAGTCAGGT
* * *
4405365 AATATTCAGTCACGTAACT-CCTGTCACGCAACACTTAACAAATATTCAGTCACGTAATGCCTAT
1 AATATTCAGTCACGTAA-TGCCTGTCACGCAACGCTCAACAAATATTCAATCACGTAATGCCTAT
4405429 AAAGAACTCACGCAATGCTCAACAAATATTCTA-TCAGGT
65 AAAGAACTCACGCAATGCTCAACAAATATT-TAGTCAGGT
* * * *
4405468 AATATTCAGTCATGTAATGCCTGTCACGCAACGCTCAACAAATATTCATTCACGTAATACTTATA
1 AATATTCAGTCACGTAATGCCTGTCACGCAACGCTCAACAAATATTCAATCACGTAATGCCTATA
* * *
4405533 AAGAACTCACGCAATGCTCAATAAATATTCAGTCACGT
66 AAGAACTCACGCAATGCTCAACAAATATTTAGTCAGGT
* *
4405571 AATATTCAGGCACCTAATGCC
1 AATATTCAGTCACGTAATGCC
4405592 AAATAAATAG
Statistics
Matches: 207, Mismatches: 16, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
102 2 0.01
103 202 0.98
104 3 0.01
ACGTcount: A:0.37, C:0.24, G:0.12, T:0.27
Consensus pattern (103 bp):
AATATTCAGTCACGTAATGCCTGTCACGCAACGCTCAACAAATATTCAATCACGTAATGCCTATA
AAGAACTCACGCAATGCTCAACAAATATTTAGTCAGGT
Found at i:4419219 original size:13 final size:13
Alignment explanation
Indices: 4419201--4419225 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4419191 AGAGAAATTG
4419201 TGATTTTATAAAA
1 TGATTTTATAAAA
4419214 TGATTTTATAAA
1 TGATTTTATAAA
4419226 TTTTCTGGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:4429009 original size:7 final size:8
Alignment explanation
Indices: 4428993--4429053 Score: 58
Period size: 8 Copynumber: 7.9 Consensus size: 8
4428983 TCGTTGTCTT
4428993 TTTCTT-C
1 TTTCTTCC
4429000 TTTC-TCC
1 TTTCTTCC
*
4429007 TTTCTTTC
1 TTTCTTCC
4429015 TTTCTTCC
1 TTTCTTCC
*
4429023 TTTC-ACC
1 TTTCTTCC
4429030 TTTCTTCC
1 TTTCTTCC
4429038 TTT-TTCTC
1 TTTCTTC-C
4429046 TTTGCTTC
1 TTT-CTTC
4429054 AAAGTCGATT
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
6 1 0.02
7 18 0.41
8 22 0.50
10 3 0.07
ACGTcount: A:0.02, C:0.33, G:0.02, T:0.64
Consensus pattern (8 bp):
TTTCTTCC
Found at i:4429031 original size:23 final size:23
Alignment explanation
Indices: 4428993--4429048 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 23
4428983 TCGTTGTCTT
* *
4428993 TTTCTT-CTTTCTCCTTTCTTTC
1 TTTCTTCCTTTCACCTTTCTTCC
4429015 TTTCTTCCTTTCACCTTTCTTCC
1 TTTCTTCCTTTCACCTTTCTTCC
4429038 TTT-TTCTCTTT
1 TTTCTTC-CTTT
4429049 GCTTCAAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
22 9 0.30
23 21 0.70
ACGTcount: A:0.02, C:0.32, G:0.00, T:0.66
Consensus pattern (23 bp):
TTTCTTCCTTTCACCTTTCTTCC
Found at i:4438560 original size:27 final size:28
Alignment explanation
Indices: 4438529--4438581 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
4438519 ATTTCCTGGT
*
4438529 GGTGG-AAAATTACAATTTTGCCCCTGA
1 GGTGGCAAAATTACAATTTTACCCCTGA
*
4438556 GGTGGCAAAATTACCATTTTACCCCT
1 GGTGGCAAAATTACAATTTTACCCCT
4438582 ATACTCCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 5 0.22
28 18 0.78
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (28 bp):
GGTGGCAAAATTACAATTTTACCCCTGA
Found at i:4439815 original size:2 final size:2
Alignment explanation
Indices: 4439808--4439837 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
4439798 GTTCGACACA
4439808 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4439838 GAGGACGAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4448541 original size:22 final size:22
Alignment explanation
Indices: 4448498--4448541 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
4448488 TTTAAAACAA
* *
4448498 CTTTAAAACTAAAAACTTTGAT
1 CTTTAAAACCAAAAACTCTGAT
*
4448520 CTTTAAAACCAAAAGCTCTGAT
1 CTTTAAAACCAAAAACTCTGAT
4448542 ACCAATCGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.43, C:0.18, G:0.07, T:0.32
Consensus pattern (22 bp):
CTTTAAAACCAAAAACTCTGAT
Found at i:4450958 original size:20 final size:20
Alignment explanation
Indices: 4450933--4450978 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
4450923 CTTCTAAACC
*
4450933 TCAAATCATATTCCAATAAG
1 TCAAATCATACTCCAATAAG
*
4450953 TCAAATTATACTCCAATAAG
1 TCAAATCATACTCCAATAAG
*
4450973 TGAAAT
1 TCAAAT
4450979 GGGGCCAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.30
Consensus pattern (20 bp):
TCAAATCATACTCCAATAAG
Found at i:4454979 original size:32 final size:32
Alignment explanation
Indices: 4454942--4455007 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
4454932 TATGTTCGAG
4454942 TTTGTATCTATGATATATATGTACTTTTAAAC
1 TTTGTATCTATGATATATATGTACTTTTAAAC
4454974 TTTGTATCTATGATATATATGTACTTTTAAAC
1 TTTGTATCTATGATATATATGTACTTTTAAAC
4455006 TT
1 TT
4455008 GATTTGATTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.30, C:0.09, G:0.09, T:0.52
Consensus pattern (32 bp):
TTTGTATCTATGATATATATGTACTTTTAAAC
Found at i:4455701 original size:30 final size:30
Alignment explanation
Indices: 4455665--4455722 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
4455655 ATAATAGAGC
4455665 TTATTTGACTAAAAATAAAAGTAAAAGAAT
1 TTATTTGACTAAAAATAAAAGTAAAAGAAT
** * *
4455695 TTATTTGGTTCAAAATAAAAGTATAAGA
1 TTATTTGACTAAAAATAAAAGTAAAAGA
4455723 GCTTGATTGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.52, C:0.03, G:0.12, T:0.33
Consensus pattern (30 bp):
TTATTTGACTAAAAATAAAAGTAAAAGAAT
Found at i:4456521 original size:20 final size:20
Alignment explanation
Indices: 4456483--4456521 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
4456473 TTGATGATGA
* *
4456483 ATTTAGTTGTTTTTCATGCC
1 ATTTAGATGTATTTCATGCC
*
4456503 ATTTAGATGTATTTGATGC
1 ATTTAGATGTATTTCATGC
4456522 TTAGGAATAC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.10, G:0.18, T:0.51
Consensus pattern (20 bp):
ATTTAGATGTATTTCATGCC
Found at i:4483326 original size:2 final size:2
Alignment explanation
Indices: 4483321--4483394 Score: 96
Period size: 2 Copynumber: 37.5 Consensus size: 2
4483311 TCTATACATG
* * **
4483321 TA TA TA TA TA TA AA TA TA TA TA TA T- TN TA TA CG TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
4483362 TA TA TA TA TA TA TA TA TA TA TA TA TA TA AA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4483395 TCATCATCAA
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
1 1 0.02
2 61 0.98
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.47
Consensus pattern (2 bp):
TA
Found at i:4485522 original size:68 final size:68
Alignment explanation
Indices: 4485360--4485675 Score: 232
Period size: 68 Copynumber: 4.7 Consensus size: 68
4485350 GAATGTTGTT
* * * * * * * *
4485360 ATGATGAATGCTATAAGATTATGTATATGATGTAAA-TTCTATATACCATATGAGATGATGAAGT
1 ATGATTAATGCCATGAGAATATGTATATGATGTAAATTTC-ATATACCACATAAGATGATTAAAT
*
4485424 ATGC
65 ATAC
* * * ** * * *
4485428 ATGATGT-ATACTATAAG-ATGGGGTATATGATGTAAATTTCATATACCATATAAGGTTATTAAA
1 ATGAT-TAATGCCATGAGAAT-ATGTATATGATGTAAATTTCATATACCACATAAGATGATTAAA
4485491 TATAC
64 TATAC
* * * * *
4485496 ATGATTAATTCCATGAGAATATGTATACGATGTATATTTCATATACTACATAAGATGATTAAGTA
1 ATGATTAATGCCATGAGAATATGTATATGATGTAAATTTCATATACCACATAAGATGATTAAATA
*
4485561 TGC
66 TAC
* * * * * * * * **
4485564 ATGATTAATGCCATGAGAATATATATATGATGTATACTCCATATACTACATGAGATAATTGAGCA
1 ATGATTAATGCCATGAGAATATGTATATGATGTAAATTTCATATACCACATAAGATGATTAAATA
4485629 -AGC
66 TA-C
* *
4485632 AT-A--AATGCCATGAGATTATATATATGATGTAAATTTCATATACC
1 ATGATTAATGCCATGAGAATATGTATATGATGTAAATTTCATATACC
4485676 TTATGAAATG
Statistics
Matches: 203, Mismatches: 39, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
65 36 0.18
67 3 0.01
68 159 0.78
69 5 0.02
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (68 bp):
ATGATTAATGCCATGAGAATATGTATATGATGTAAATTTCATATACCACATAAGATGATTAAATA
TAC
Found at i:4485882 original size:31 final size:31
Alignment explanation
Indices: 4485813--4485882 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 31
4485803 ATCACAAAAT
*
4485813 GCCCAAGG-GCAATAGGGATATACGTTGCCA
1 GCCCAAGGTGCAATAGGGATATACATTGCCA
* * * * *
4485843 GCCTAAGGTGCAATGGGGATGTATATTGCTA
1 GCCCAAGGTGCAATAGGGATATACATTGCCA
4485874 GCCCAAGGT
1 GCCCAAGGT
4485883 TGATGGGGGT
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
30 7 0.22
31 25 0.78
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.21
Consensus pattern (31 bp):
GCCCAAGGTGCAATAGGGATATACATTGCCA
Found at i:4490189 original size:21 final size:20
Alignment explanation
Indices: 4490165--4490203 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
4490155 GTGAAGCTAC
4490165 TTGACTTTGAATGAGTGCTGT
1 TTGACTTTGAATGA-TGCTGT
*
4490186 TTGACTTTGTATGATGCT
1 TTGACTTTGAATGATGCT
4490204 ATCATTCTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.18, C:0.10, G:0.26, T:0.46
Consensus pattern (20 bp):
TTGACTTTGAATGATGCTGT
Found at i:4503197 original size:15 final size:15
Alignment explanation
Indices: 4503177--4503207 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
4503167 AATATTTATA
*
4503177 ATTTTAAAAACATTT
1 ATTTTAAAAAAATTT
4503192 ATTTTAAAAAAATTT
1 ATTTTAAAAAAATTT
4503207 A
1 A
4503208 AACTTTTACC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (15 bp):
ATTTTAAAAAAATTT
Found at i:4509264 original size:19 final size:18
Alignment explanation
Indices: 4509216--4509264 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
4509206 GGAACGGGTA
*
4509216 AAAAGAATATTTTAAAAT
1 AAAATAATATTTTAAAAT
* *
4509234 AAAATATTTATTTTATGAAT
1 AAAATA-ATATTTTA-AAAT
4509254 AAAATAATATT
1 AAAATAATATT
4509265 AAAATATTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
18 5 0.20
19 11 0.44
20 9 0.36
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (18 bp):
AAAATAATATTTTAAAAT
Found at i:4511117 original size:30 final size:30
Alignment explanation
Indices: 4511078--4511134 Score: 80
Period size: 31 Copynumber: 1.9 Consensus size: 30
4511068 TTTCTTTTAT
4511078 AATTGATAAA-AAAATTTAAAAAATAAAAA
1 AATTGATAAAGAAAATTTAAAAAATAAAAA
* *
4511107 AATTGTATAAAGTAATTTTAAAAAATAA
1 AATTG-ATAAAGAAAATTTAAAAAATAA
4511135 TCAAAGGTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 5 0.21
30 5 0.21
31 14 0.58
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (30 bp):
AATTGATAAAGAAAATTTAAAAAATAAAAA
Found at i:4512664 original size:22 final size:24
Alignment explanation
Indices: 4512630--4512675 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 24
4512620 GAAAAATCTC
4512630 AAAAATAAATA-TTT-AAAATTTT
1 AAAAATAAATATTTTGAAAATTTT
**
4512652 AAAAATATTTATTTTGAAAATTTT
1 AAAAATAAATATTTTGAAAATTTT
4512676 TTAAACTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 9 0.45
23 3 0.15
24 8 0.40
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (24 bp):
AAAAATAAATATTTTGAAAATTTT
Found at i:4513188 original size:22 final size:20
Alignment explanation
Indices: 4513171--4513212 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
4513161 TAAAATATTT
4513171 TTTATT-TATTTTAAAAATA
1 TTTATTATATTTTAAAAATA
*
4513190 ATTATTATATTTTAAAAA-A
1 TTTATTATATTTTAAAAATA
4513209 TTTA
1 TTTA
4513213 AAAAAAGTAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
TTTATTATATTTTAAAAATA
Found at i:4515194 original size:30 final size:30
Alignment explanation
Indices: 4515155--4515211 Score: 80
Period size: 31 Copynumber: 1.9 Consensus size: 30
4515145 TTTCTTTTAT
4515155 AATTGATAAA-AAAATTTAAAAAATAAAAA
1 AATTGATAAAGAAAATTTAAAAAATAAAAA
* *
4515184 AATTGTATAAAGTAATTTTAAAAAATAA
1 AATTG-ATAAAGAAAATTTAAAAAATAA
4515212 TCAAAGGTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 5 0.21
30 5 0.21
31 14 0.58
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (30 bp):
AATTGATAAAGAAAATTTAAAAAATAAAAA
Found at i:4519824 original size:21 final size:20
Alignment explanation
Indices: 4519800--4519847 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 20
4519790 AAAATAATTA
4519800 AAATAAAATAATAA-TAACAT
1 AAATAAAATAA-AATTAACAT
*
4519820 CAAATATAATAAAATTTAACAT
1 -AAATAAAATAAAA-TTAACAT
4519842 AAATAA
1 AAATAA
4519848 CGTATATAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 2 0.09
21 15 0.65
22 6 0.26
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (20 bp):
AAATAAAATAAAATTAACAT
Found at i:4526830 original size:31 final size:31
Alignment explanation
Indices: 4526792--4527127 Score: 492
Period size: 31 Copynumber: 10.8 Consensus size: 31
4526782 CACGACATTG
*
4526792 GTTATATGCATGACGTGTTACAACATTTTAC
1 GTTATATGCATGGCGTGTTACAACATTTTAC
*
4526823 GTTATATGCATGGCGTGTTACAACATTTAAC
1 GTTATATGCATGGCGTGTTACAACATTTTAC
*
4526854 GTTATATGTATGGCGTGTTACAACATTTTAC
1 GTTATATGCATGGCGTGTTACAACATTTTAC
*
4526885 GTTATATGCATGGCGTGTTACAACATTTAAC
1 GTTATATGCATGGCGTGTTACAACATTTTAC
*
4526916 GTTATATGTATGGCGTGTTACAACATTTTAC
1 GTTATATGCATGGCGTGTTACAACATTTTAC
*
4526947 GTTATATGCATGGCGTGTTACAACATTTAAC
1 GTTATATGCATGGCGTGTTACAACATTTTAC
* *
4526978 GTTATATGCATGGCGTGTTACCACATTTTAT
1 GTTATATGCATGGCGTGTTACAACATTTTAC
* * * *
4527009 GCTATATACATGGCGTGTTACAATATTTTAT
1 GTTATATGCATGGCGTGTTACAACATTTTAC
* *
4527040 ATTATATGCATGGCGTGTTACCACATTTTAC
1 GTTATATGCATGGCGTGTTACAACATTTTAC
* * * *
4527071 GTTATATGCATTGTGTGTTACGACATTTTAG
1 GTTATATGCATGGCGTGTTACAACATTTTAC
* *
4527102 GTTTTATGCATGGCGTGTAACAACAT
1 GTTATATGCATGGCGTGTTACAACAT
4527128 GACTAACAAA
Statistics
Matches: 272, Mismatches: 33, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 272 1.00
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.39
Consensus pattern (31 bp):
GTTATATGCATGGCGTGTTACAACATTTTAC
Found at i:4534155 original size:22 final size:23
Alignment explanation
Indices: 4534121--4534165 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
4534111 GAGAAATCTC
*
4534121 AAAAATAAATA-TTTATAATTTT
1 AAAAATAAATATTTTAAAATTTT
**
4534143 AAAAATATTTATTTTAAAATTTT
1 AAAAATAAATATTTTAAAATTTT
4534166 TTTAAACTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (23 bp):
AAAAATAAATATTTTAAAATTTT
Found at i:4536073 original size:83 final size:83
Alignment explanation
Indices: 4535981--4536153 Score: 319
Period size: 83 Copynumber: 2.1 Consensus size: 83
4535971 TATAATCAGG
4535981 ATTAATTAAAAAATGATACATTGATGAAATTTTAAAAAATAATGTAACACTACAACTTATATTTG
1 ATTAATTAAAAAATGATACATTGATGAAATTTTAAAAAATAATGTAACACTACAACTTATATTTG
4536046 AGAACTATATAATAATTA
66 AGAACTATATAATAATTA
**
4536064 ATTAATTAAAAAATGATACATTGATGAAATTTTAAGTAATAATGTAACACTACAACTTATATTTG
1 ATTAATTAAAAAATGATACATTGATGAAATTTTAAAAAATAATGTAACACTACAACTTATATTTG
*
4536129 AGAACTATATAATAATTT
66 AGAACTATATAATAATTA
4536147 ATTAATT
1 ATTAATT
4536154 TTTAAAGATT
Statistics
Matches: 87, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
83 87 1.00
ACGTcount: A:0.49, C:0.07, G:0.08, T:0.37
Consensus pattern (83 bp):
ATTAATTAAAAAATGATACATTGATGAAATTTTAAAAAATAATGTAACACTACAACTTATATTTG
AGAACTATATAATAATTA
Found at i:4536361 original size:18 final size:18
Alignment explanation
Indices: 4536338--4536377 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
4536328 AGTAGAAATG
*
4536338 AAATAAATA-AATAAATAA
1 AAATAAAAATAAT-AATAA
4536356 AAATAAAAATAATAATAA
1 AAATAAAAATAATAATAA
4536374 AAAT
1 AAAT
4536378 TGAAAAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 17 0.85
19 3 0.15
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.23
Consensus pattern (18 bp):
AAATAAAAATAATAATAA
Found at i:4537309 original size:57 final size:56
Alignment explanation
Indices: 4537127--4537309 Score: 228
Period size: 57 Copynumber: 3.3 Consensus size: 56
4537117 TATTTTTTTA
* ** * *
4537127 ACATGACTTATAACAATAATA--TTTTTTTCAACATGGTGTATAACATGTTTATAT
1 ACATGACTTATAACAATAATATTTTTTTTTTAACATGACGTATAACATGTTTTTGT
* *
4537181 ACATGACATATAACAATAATATTTTTTTTTTTAACATGACGTGTAACATGTTTTTGT
1 ACATGACTTATAACAATAATA-TTTTTTTTTTAACATGACGTATAACATGTTTTTGT
*
4537238 ACATG-GTGTATAACAATAATATTTCTTTTTTTAACATGACGTATAACATGTTTTTGT
1 ACATGACT-TATAACAATAATATTT-TTTTTTTAACATGACGTATAACATGTTTTTGT
* *
4537295 ACATGGCTTGTAACA
1 ACATGACTTATAACA
4537310 CCATTAACGG
Statistics
Matches: 111, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
54 20 0.18
56 3 0.03
57 87 0.78
58 1 0.01
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.43
Consensus pattern (56 bp):
ACATGACTTATAACAATAATATTTTTTTTTTAACATGACGTATAACATGTTTTTGT
Found at i:4539107 original size:1 final size:1
Alignment explanation
Indices: 4539096--4539127 Score: 55
Period size: 1 Copynumber: 32.0 Consensus size: 1
4539086 CGGGACCACC
*
4539096 TTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
4539128 CTTGTTTCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:0.00, C:0.00, G:0.03, T:0.97
Consensus pattern (1 bp):
T
Found at i:4539813 original size:62 final size:63
Alignment explanation
Indices: 4539737--4539854 Score: 202
Period size: 62 Copynumber: 1.9 Consensus size: 63
4539727 ATTTGGCATC
* *
4539737 ACATGATTGAATATTTGTTGAGAATTGCGTGACTTGTTTGT-GGCATTACGTGACTGAATATT
1 ACATGATTGAATATTTGTTGAGAATTGCGTGACCTATTTGTAGGCATTACGTGACTGAATATT
*
4539799 ACATGATTGAATATTTGTTGAGTATTGCGTGACCTATTTGTAGGCATTACGTGACT
1 ACATGATTGAATATTTGTTGAGAATTGCGTGACCTATTTGTAGGCATTACGTGACT
4539855 TGTTTGTATG
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
62 38 0.73
63 14 0.27
ACGTcount: A:0.25, C:0.11, G:0.24, T:0.40
Consensus pattern (63 bp):
ACATGATTGAATATTTGTTGAGAATTGCGTGACCTATTTGTAGGCATTACGTGACTGAATATT
Found at i:4539860 original size:22 final size:22
Alignment explanation
Indices: 4539826--4539877 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
4539816 TTGAGTATTG
*
4539826 CGTGACCTATTTGTAGGCATTA
1 CGTGACTTATTTGTAGGCATTA
* * *
4539848 CGTGACTTGTTTGTATGCATTG
1 CGTGACTTATTTGTAGGCATTA
4539870 CGTGACTT
1 CGTGACTT
4539878 TATCTACCAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.17, C:0.17, G:0.25, T:0.40
Consensus pattern (22 bp):
CGTGACTTATTTGTAGGCATTA
Found at i:4541516 original size:22 final size:22
Alignment explanation
Indices: 4541481--4541531 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
4541471 TTTATCTCTT
*
4541481 GTTTTGAGGCTTTG-GTTCACTA
1 GTTTTTAGGCTTTGCG-TCACTA
* *
4541503 GTTTTTAGGGTTTGCGTGACTA
1 GTTTTTAGGCTTTGCGTCACTA
4541525 GTTTTTA
1 GTTTTTA
4541532 TATATTGCGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 24 0.96
23 1 0.04
ACGTcount: A:0.14, C:0.10, G:0.27, T:0.49
Consensus pattern (22 bp):
GTTTTTAGGCTTTGCGTCACTA
Found at i:4541539 original size:22 final size:22
Alignment explanation
Indices: 4541514--4541565 Score: 79
Period size: 22 Copynumber: 2.4 Consensus size: 22
4541504 TTTTTAGGGT
*
4541514 TTGCGTGA-CTAGTTTTTATATA
1 TTGCGTGACCT-GTTGTTATATA
4541536 TTGCGTGACCTGTTGTTATATA
1 TTGCGTGACCTGTTGTTATATA
4541558 TTGCGTGA
1 TTGCGTGA
4541566 AATTGGGCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
22 26 0.93
23 2 0.07
ACGTcount: A:0.19, C:0.12, G:0.23, T:0.46
Consensus pattern (22 bp):
TTGCGTGACCTGTTGTTATATA
Found at i:4541731 original size:22 final size:22
Alignment explanation
Indices: 4541706--4541769 Score: 112
Period size: 22 Copynumber: 2.9 Consensus size: 22
4541696 TTGTTCATTA
4541706 GTTTTT-TGGCATTGCGTGACTG
1 GTTTTTAT-GCATTGCGTGACTG
4541728 GTTTTTATGCATTGCGTGACTG
1 GTTTTTATGCATTGCGTGACTG
4541750 GTTTTTATGCATTGCGTGAC
1 GTTTTTATGCATTGCGTGAC
4541770 ATTAGGCCAG
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
22 40 0.98
23 1 0.02
ACGTcount: A:0.12, C:0.14, G:0.28, T:0.45
Consensus pattern (22 bp):
GTTTTTATGCATTGCGTGACTG
Found at i:4542052 original size:185 final size:180
Alignment explanation
Indices: 4541728--4542108 Score: 487
Period size: 185 Copynumber: 2.1 Consensus size: 180
4541718 TGCGTGACTG
* * *
4541728 GTTTTTATGCATTGCGTGACTGGTTTTTATGCATTGCGTGACATTAGGCCAGTACGTGACTGGTT
1 GTTTTTAGGCATTGCGTGACTGGTTGTTATGCATTACGTGACATTAGGCCAGTACGTGACTGGTT
* * * * * * *
4541793 TTGTTGGCATAATGTGAGTGGGTATAAGGCATTGAGTGACTTATTCTTAAGTATAGTGAGATTGG
66 ATATTGGCATAATATGAGTGGATATAACGCATTGAGTGACTTATTATTAAGTATAGTGAGATAGG
* *
4541858 CAGTGCGTGATTGACTTGTGCAATTTACCTCTTGTTTTGAGGCTTTTGGTCACTA
131 CA-TGC--G--TGACTTGTGCAATTCACCTCTTGTTTTAAGGCTTTTGGTCACTA
* * *
4541913 GTTTTTAGGCATTGCGTGACCT-GTTGTTATGTATTACGTGACATTGGGCCATTACGTGACTGGT
1 GTTTTTAGGCATTGCGTGA-CTGGTTGTTATGCATTACGTGACATTAGGCCAGTACGTGACTGGT
* * *
4541977 TATATTGGCATAATATGAGTGGATATTACGCATTGGGTGACTTATTATTAAGTATTGTGAGACTA
65 TATATTGGCATAATATGAGTGGATATAACGCATTGAGTGACTTATTATTAAGTATAGTGAGA-TA
* *
4542042 GTGC-TGCGTGACTTGTGCAATTCACGTCTTGTTTTAAGGCTTTTGTTCACTA
129 G-GCATGCGTGACTTGTGCAATTCACCTCTTGTTTTAAGGCTTTTGGTCACTA
*
4542094 GTTTTTTGGCATTGC
1 GTTTTTAGGCATTGC
4542109 ATGAATGTGT
Statistics
Matches: 172, Mismatches: 21, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
181 54 0.31
183 1 0.01
185 111 0.65
186 4 0.02
187 2 0.01
ACGTcount: A:0.20, C:0.13, G:0.26, T:0.40
Consensus pattern (180 bp):
GTTTTTAGGCATTGCGTGACTGGTTGTTATGCATTACGTGACATTAGGCCAGTACGTGACTGGTT
ATATTGGCATAATATGAGTGGATATAACGCATTGAGTGACTTATTATTAAGTATAGTGAGATAGG
CATGCGTGACTTGTGCAATTCACCTCTTGTTTTAAGGCTTTTGGTCACTA
Found at i:4546279 original size:20 final size:20
Alignment explanation
Indices: 4546250--4546288 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
4546240 TGTTAGGCAT
4546250 TGTGTCACTGGATATTAGGG
1 TGTGTCACTGGATATTAGGG
*
4546270 TGTGTGACTGGATATTAGG
1 TGTGTCACTGGATATTAGG
4546289 AATCGTAATC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.21, C:0.08, G:0.36, T:0.36
Consensus pattern (20 bp):
TGTGTCACTGGATATTAGGG
Found at i:4546378 original size:15 final size:15
Alignment explanation
Indices: 4546358--4546390 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
4546348 TGTTTGTGGC
4546358 ATTACGTGACTGAAT
1 ATTACGTGACTGAAT
*
4546373 ATTACGTGATTGAAT
1 ATTACGTGACTGAAT
4546388 ATT
1 ATT
4546391 TGTTGAGTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.39
Consensus pattern (15 bp):
ATTACGTGACTGAAT
Found at i:4546453 original size:22 final size:22
Alignment explanation
Indices: 4546399--4546454 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
4546389 TTTGTTGAGT
* *
4546399 ATTGTGTGACCTGTTTGTAGGC
1 ATTGCGTGACTTGTTTGTAGGC
* *
4546421 ATTACGTGACTTGTTTGTATGC
1 ATTGCGTGACTTGTTTGTAGGC
4546443 ATTGCGTGACTT
1 ATTGCGTGACTT
4546455 TATCTACCAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.16, C:0.14, G:0.27, T:0.43
Consensus pattern (22 bp):
ATTGCGTGACTTGTTTGTAGGC
Found at i:4547791 original size:13 final size:13
Alignment explanation
Indices: 4547773--4547797 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4547763 ATTTTCAAAA
4547773 ATTTTATAAAATT
1 ATTTTATAAAATT
4547786 ATTTTATAAAAT
1 ATTTTATAAAAT
4547798 CTCATTTTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATTTTATAAAATT
Found at i:4553311 original size:19 final size:19
Alignment explanation
Indices: 4553284--4553321 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
4553274 CCATTTGACT
4553284 TATTAGAGTATGATTTGAG
1 TATTAGAGTATGATTTGAG
*
4553303 TATTGGAGTATGATTTGAG
1 TATTAGAGTATGATTTGAG
4553322 GTTAAGAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.42
Consensus pattern (19 bp):
TATTAGAGTATGATTTGAG
Found at i:4562191 original size:129 final size:129
Alignment explanation
Indices: 4561961--4562221 Score: 432
Period size: 129 Copynumber: 2.0 Consensus size: 129
4561951 GGTATATTAA
*
4561961 ACGGTCACTGCAGTGGTGGGGGTTTCCATGGACTGCCTATGAGAGGGGCACGGTAACCCAATTAT
1 ACGGTCACTACAGTGGTGGGGGTTTCCATGGACTGCCTATGAGAGGGGCACGGTAACCCAATTAT
* *
4562026 ATATTTACCTCCGGAGGGAGATGTTGGATGATGTATCTCCTGAGGTAAGATTTGAATGCACCTC
66 ATACTTACCTCCGGAGGGAGATGTTGGATGAAGTATCTCCTGAGGTAAGATTTGAATGCACCTC
* * *
4562090 ACGGTCACTACAGTGGTGGGGGTTTTCGTGGACTGCCTATGAGAGGGGCACGGTAACTCAATTAT
1 ACGGTCACTACAGTGGTGGGGGTTTCCATGGACTGCCTATGAGAGGGGCACGGTAACCCAATTAT
* * * *
4562155 ATACTTACCTCCGGGGGGAGATGTTGGGTGAAGTATCTCCTGAGGTATGATTTGAGTGCACCTC
66 ATACTTACCTCCGGAGGGAGATGTTGGATGAAGTATCTCCTGAGGTAAGATTTGAATGCACCTC
4562219 ACG
1 ACG
4562222 TTCGGGCCAC
Statistics
Matches: 122, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
129 122 1.00
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.27
Consensus pattern (129 bp):
ACGGTCACTACAGTGGTGGGGGTTTCCATGGACTGCCTATGAGAGGGGCACGGTAACCCAATTAT
ATACTTACCTCCGGAGGGAGATGTTGGATGAAGTATCTCCTGAGGTAAGATTTGAATGCACCTC
Found at i:4563629 original size:22 final size:22
Alignment explanation
Indices: 4563604--4563657 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 22
4563594 GTTTTTAGGC
*
4563604 ATTGCGTGACTACTTTTTATAT
1 ATTGCGTGACTACTTGTTATAT
* ** *
4563626 ATTGTGTGACTTGTTGTTATGT
1 ATTGCGTGACTACTTGTTATAT
4563648 ATTGCGTGAC
1 ATTGCGTGAC
4563658 ATTGGGCCAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.19, C:0.11, G:0.22, T:0.48
Consensus pattern (22 bp):
ATTGCGTGACTACTTGTTATAT
Found at i:4567875 original size:20 final size:20
Alignment explanation
Indices: 4567850--4567895 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
4567840 CTTCTAAACC
4567850 TCAAATCATACTCCAATAAG
1 TCAAATCATACTCCAATAAG
*
4567870 TCAAATTATACTCCAATAAG
1 TCAAATCATACTCCAATAAG
4567890 TCAAAT
1 TCAAAT
4567896 GGGGTCAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.46, C:0.22, G:0.04, T:0.28
Consensus pattern (20 bp):
TCAAATCATACTCCAATAAG
Found at i:4572155 original size:25 final size:25
Alignment explanation
Indices: 4572127--4572185 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
4572117 ATGGACTTCT
*
4572127 CCCATTTATT-TTTAATTGGGCCATG
1 CCCATTTATTCCTT-ATTGGGCCATG
4572152 CCCATTCT-TTCCTTATTGGGCCATG
1 CCCATT-TATTCCTTATTGGGCCATG
*
4572177 TCCATTTAT
1 CCCATTTAT
4572186 ATGCATATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
24 1 0.03
25 25 0.86
26 3 0.10
ACGTcount: A:0.17, C:0.25, G:0.14, T:0.44
Consensus pattern (25 bp):
CCCATTTATTCCTTATTGGGCCATG
Found at i:4572418 original size:33 final size:33
Alignment explanation
Indices: 4572380--4572457 Score: 95
Period size: 33 Copynumber: 2.4 Consensus size: 33
4572370 CAGCAGCTGG
*
4572380 AGCTGCTC-ATATACACATCAAAATTAGCAGCCA
1 AGCTGCTCTAT-TACACATCAAAATCAGCAGCCA
* * * *
4572413 AGCTGCTCTATTTCTCCTCAAAATCAGCAGCTA
1 AGCTGCTCTATTACACATCAAAATCAGCAGCCA
4572446 AGCTGCTCTATT
1 AGCTGCTCTATT
4572458 TTTCCTCTAA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
33 37 0.95
34 2 0.05
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.28
Consensus pattern (33 bp):
AGCTGCTCTATTACACATCAAAATCAGCAGCCA
Found at i:4572458 original size:33 final size:33
Alignment explanation
Indices: 4572397--4572481 Score: 116
Period size: 33 Copynumber: 2.5 Consensus size: 33
4572387 CATATACACA
*
4572397 TCAAAATTAGCAGCCAAGCTGCTCTATTTCTCC
1 TCAAAATCAGCAGCCAAGCTGCTCTATTTCTCC
* *
4572430 TCAAAATCAGCAGCTAAGCTGCTCTATTTTTCC
1 TCAAAATCAGCAGCCAAGCTGCTCTATTTCTCC
*
4572463 TCTAAAAATCAACAGCCAA
1 TC--AAAATCAGCAGCCAA
4572482 AGCTACAAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
33 32 0.71
35 13 0.29
ACGTcount: A:0.33, C:0.28, G:0.11, T:0.28
Consensus pattern (33 bp):
TCAAAATCAGCAGCCAAGCTGCTCTATTTCTCC
Found at i:4572528 original size:35 final size:35
Alignment explanation
Indices: 4572488--4572569 Score: 112
Period size: 35 Copynumber: 2.3 Consensus size: 35
4572478 CCAAAGCTAC
*
4572488 AAAAATTAGCAACAAAAATC-GCACCTTTCAGCCTT
1 AAAAATCAGCAACAAAAA-CAGCACCTTTCAGCCTT
* * *
4572523 CAAAATCAGCAGCCAAAACAGCACCTTTCAGCCTT
1 AAAAATCAGCAACAAAAACAGCACCTTTCAGCCTT
4572558 AAAAATCAGCAA
1 AAAAATCAGCAA
4572570 TTAAAGCCTC
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
34 1 0.03
35 39 0.98
ACGTcount: A:0.44, C:0.28, G:0.10, T:0.18
Consensus pattern (35 bp):
AAAAATCAGCAACAAAAACAGCACCTTTCAGCCTT
Found at i:4572597 original size:22 final size:22
Alignment explanation
Indices: 4572552--4572598 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
4572542 AGCACCTTTC
* **
4572552 AGCCTTAAAAATCAGCAATTAA
1 AGCCTCAAAAATCAGCAACCAA
*
4572574 AGCCTCAAAAATCAGCAGCCAA
1 AGCCTCAAAAATCAGCAACCAA
4572596 AGC
1 AGC
4572599 TGCTTCTTCC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.47, C:0.26, G:0.13, T:0.15
Consensus pattern (22 bp):
AGCCTCAAAAATCAGCAACCAA
Found at i:4574665 original size:23 final size:23
Alignment explanation
Indices: 4574617--4574695 Score: 77
Period size: 23 Copynumber: 3.4 Consensus size: 23
4574607 CATTTCAAAA
* *
4574617 AGTCACGCGATTGCATATGAACT
1 AGTCACGCGATTCCATATTAACT
*
4574640 AGTCACGCGATTCCATATTAATT
1 AGTCACGCGATTCCATATTAACT
* * * *
4574663 AGTAACGCCACTCCATATTTACT
1 AGTCACGCGATTCCATATTAACT
* *
4574686 ACTTACGCGA
1 AGTCACGCGA
4574696 CTAAAATTCA
Statistics
Matches: 45, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.29
Consensus pattern (23 bp):
AGTCACGCGATTCCATATTAACT
Found at i:4621743 original size:26 final size:26
Alignment explanation
Indices: 4621714--4621767 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
4621704 AACTACTAAA
*
4621714 TTCCCTGGCTTCACTTTAATCTCCTT
1 TTCCCTAGCTTCACTTTAATCTCCTT
* *
4621740 TTCCTTAGCTTCACTTTAATCTCTTT
1 TTCCCTAGCTTCACTTTAATCTCCTT
4621766 TT
1 TT
4621768 TCCTTTTCAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.30, G:0.06, T:0.52
Consensus pattern (26 bp):
TTCCCTAGCTTCACTTTAATCTCCTT
Found at i:4623328 original size:21 final size:22
Alignment explanation
Indices: 4623291--4623338 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 22
4623281 CCTCTACCTT
*
4623291 TTTTCCCTTATCCTTCAT-CCC
1 TTTTCCCTTATCCTTCATACCA
*
4623312 TTTTCCCTT-TCGTTTCATACCA
1 TTTTCCCTTATC-CTTCATACCA
4623334 TTTTC
1 TTTTC
4623339 TATAGATGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 2 0.09
21 14 0.61
22 7 0.30
ACGTcount: A:0.10, C:0.35, G:0.02, T:0.52
Consensus pattern (22 bp):
TTTTCCCTTATCCTTCATACCA
Found at i:4624413 original size:19 final size:20
Alignment explanation
Indices: 4624370--4624413 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
4624360 ACTTCTTTCT
*
4624370 ATTTTCACTTGATTTATTAT
1 ATTTTCACTTGATTTATTAG
* *
4624390 TTTTTCATTTG-TTTATTAG
1 ATTTTCACTTGATTTATTAG
4624409 ATTTT
1 ATTTT
4624414 ACAACAAGTA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.20, C:0.07, G:0.07, T:0.66
Consensus pattern (20 bp):
ATTTTCACTTGATTTATTAG
Found at i:4624413 original size:20 final size:20
Alignment explanation
Indices: 4624371--4624413 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
4624361 CTTCTTTCTA
*
4624371 TTTTCACTTGATTTATTATT
1 TTTTCACTTGATTTATTAAT
*
4624391 TTTTCATTTG-TTTATTAGAT
1 TTTTCACTTGATTTATTA-AT
4624411 TTT
1 TTT
4624414 ACAACAAGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.19, C:0.07, G:0.07, T:0.67
Consensus pattern (20 bp):
TTTTCACTTGATTTATTAAT
Found at i:4629621 original size:16 final size:17
Alignment explanation
Indices: 4629590--4629622 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
4629580 TTTTCAAAAA
*
4629590 AAAAAAGTAAAGAAGAG
1 AAAAAAGTAAAAAAGAG
4629607 AAAAAAG-AAAAAAGAG
1 AAAAAAGTAAAAAAGAG
4629623 TCTTTAGTGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.76, C:0.00, G:0.21, T:0.03
Consensus pattern (17 bp):
AAAAAAGTAAAAAAGAG
Found at i:4634174 original size:19 final size:20
Alignment explanation
Indices: 4634152--4634191 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
4634142 CAAGATAAAT
4634152 TTTTTA-GAATAAAATAATA
1 TTTTTATGAATAAAATAATA
*
4634171 -TTTTATTAATAAAATAATA
1 TTTTTATGAATAAAATAATA
4634190 TT
1 TT
4634192 AAAATATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
18 5 0.28
19 12 0.67
20 1 0.06
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (20 bp):
TTTTTATGAATAAAATAATA
Found at i:4634639 original size:20 final size:20
Alignment explanation
Indices: 4634594--4634631 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
4634584 TTTTGGCCCC
*
4634594 ATTTGACTTATTTGAGTATA
1 ATTTGACTTATTGGAGTATA
4634614 ATTTGACTTATTGGAGTA
1 ATTTGACTTATTGGAGTA
4634632 AGATTTGAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.29, C:0.05, G:0.18, T:0.47
Consensus pattern (20 bp):
ATTTGACTTATTGGAGTATA
Found at i:4634721 original size:28 final size:27
Alignment explanation
Indices: 4634684--4634736 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
4634674 TTTGGAGTAA
*
4634684 AAGGGTAAAATGGTAATTTTGCCACCCC
1 AAGGGCAAAATGGTAATTTT-CCACCCC
*
4634712 AAGGGCAAAATTGTAATTTTCCACC
1 AAGGGCAAAATGGTAATTTTCCACC
4634737 ACCAGGACAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 5 0.22
28 18 0.78
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (27 bp):
AAGGGCAAAATGGTAATTTTCCACCCC
Found at i:4645623 original size:21 final size:21
Alignment explanation
Indices: 4645597--4645636 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
4645587 CCTCGAAGCC
*
4645597 TATCATAGTTAGCCACATCCT
1 TATCATAGTCAGCCACATCCT
*
4645618 TATCATAGTCAGTCACATC
1 TATCATAGTCAGCCACATC
4645637 ATTCTCCATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.28, G:0.10, T:0.33
Consensus pattern (21 bp):
TATCATAGTCAGCCACATCCT
Found at i:4646016 original size:29 final size:29
Alignment explanation
Indices: 4645939--4646045 Score: 76
Period size: 29 Copynumber: 3.7 Consensus size: 29
4645929 TTATGACGGT
*
4645939 TGGCATCGCCTGGAGTAATCTCCCTTCGA
1 TGGCATCGCCTGGAGTAATCGCCCTTCGA
** * ** * *
4645968 CAGCATTGCCCAGAGCAATCGCCCTTTGA
1 TGGCATCGCCTGGAGTAATCGCCCTTCGA
*
4645997 TGGCATCACCTGGAGTAATC-CCACTTCG-
1 TGGCATCGCCTGGAGTAATCGCC-CTTCGA
*
4646025 TCTGCATCG-CTCGGAGTAATC
1 T-GGCATCGCCT-GGAGTAATC
4646046 TCTTAGCGGG
Statistics
Matches: 57, Mismatches: 18, Indels: 6
0.70 0.22 0.07
Matches are distributed among these distances:
28 5 0.09
29 52 0.91
ACGTcount: A:0.21, C:0.32, G:0.22, T:0.25
Consensus pattern (29 bp):
TGGCATCGCCTGGAGTAATCGCCCTTCGA
Found at i:4649426 original size:22 final size:23
Alignment explanation
Indices: 4649374--4649426 Score: 56
Period size: 22 Copynumber: 2.3 Consensus size: 23
4649364 TCTCTGATAT
*
4649374 ATAATTATTTCAGCTTAATTTTG
1 ATAATAATTTCAGCTTAATTTTG
* *
4649397 ATAGTAATTT-AGCTTAGTTCTTG
1 ATAATAATTTCAGCTTAATT-TTG
4649420 -TAATAAT
1 ATAATAAT
4649427 ACATAGAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
22 14 0.56
23 11 0.44
ACGTcount: A:0.32, C:0.08, G:0.11, T:0.49
Consensus pattern (23 bp):
ATAATAATTTCAGCTTAATTTTG
Found at i:4649990 original size:27 final size:27
Alignment explanation
Indices: 4649952--4650004 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
4649942 ATCTAACATT
4649952 AAAATCAAAGGCATACCAAATGCCATC
1 AAAATCAAAGGCATACCAAATGCCATC
*
4649979 AAAATCAAAGGCATACCGAATGCCAT
1 AAAATCAAAGGCATACCAAATGCCAT
4650005 ATATGCAACC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.47, C:0.25, G:0.13, T:0.15
Consensus pattern (27 bp):
AAAATCAAAGGCATACCAAATGCCATC
Found at i:4660954 original size:13 final size:13
Alignment explanation
Indices: 4660936--4660960 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4660926 GGAGAAATTG
4660936 TGATTTTATAAAA
1 TGATTTTATAAAA
4660949 TGATTTTATAAA
1 TGATTTTATAAA
4660961 TTTTCTGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:4663125 original size:12 final size:11
Alignment explanation
Indices: 4663098--4663155 Score: 59
Period size: 11 Copynumber: 5.5 Consensus size: 11
4663088 AACCAAGCCT
4663098 TTTCTTCCTTTC
1 TTTC-TCCTTTC
* *
4663110 TCTCT-TTTTC
1 TTTCTCCTTTC
4663120 TTTCTCCTTTC
1 TTTCTCCTTTC
*
4663131 TTTCT--TTCC
1 TTTCTCCTTTC
4663140 TTTCTCCTTTC
1 TTTCTCCTTTC
4663151 TTTCT
1 TTTCT
4663156 TTCTTTTCTC
Statistics
Matches: 37, Mismatches: 6, Indels: 7
0.74 0.12 0.14
Matches are distributed among these distances:
9 8 0.22
10 8 0.22
11 18 0.49
12 3 0.08
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (11 bp):
TTTCTCCTTTC
Found at i:4663133 original size:4 final size:4
Alignment explanation
Indices: 4663098--4663161 Score: 55
Period size: 4 Copynumber: 16.8 Consensus size: 4
4663088 AACCAAGCCT
* * *
4663098 TTTC TTCC TTTC TCTC -TT- TTTC TTTC -TCC TTTC TTTC TTTCC TTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTT-C TTTC
*
4663144 -TCC TTTC TTTC TTTC TTT
1 TTTC TTTC TTTC TTTC TTT
4663162 TCTCGTTTCT
Statistics
Matches: 47, Mismatches: 8, Indels: 10
0.72 0.12 0.15
Matches are distributed among these distances:
3 7 0.15
4 36 0.77
5 4 0.09
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (4 bp):
TTTC
Found at i:4663144 original size:20 final size:20
Alignment explanation
Indices: 4663098--4663172 Score: 96
Period size: 20 Copynumber: 3.6 Consensus size: 20
4663088 AACCAAGCCT
* *
4663098 TTTCTTCCTTTCTCTCTTTTTC
1 TTTC-TCCTTTCTTTC-TTTCC
4663120 TTTCTCCTTTCTTTCTTTCC
1 TTTCTCCTTTCTTTCTTTCC
*
4663140 TTTCTCCTTTCTTTCTTTCT
1 TTTCTCCTTTCTTTCTTTCC
*
4663160 TTTCTCGTTTCTT
1 TTTCTCCTTTCTT
4663173 CCAACTGATC
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
20 35 0.71
21 10 0.20
22 4 0.08
ACGTcount: A:0.00, C:0.31, G:0.01, T:0.68
Consensus pattern (20 bp):
TTTCTCCTTTCTTTCTTTCC
Found at i:4670951 original size:18 final size:19
Alignment explanation
Indices: 4670920--4670961 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
4670910 AAAATTTATA
*
4670920 TTTAAATTATTAATAAAAT
1 TTTATATTATTAATAAAAT
**
4670939 TTTATATTA-TAATTTAAT
1 TTTATATTATTAATAAAAT
4670957 TTTAT
1 TTTAT
4670962 TTTAAAGTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
TTTATATTATTAATAAAAT
Found at i:4677961 original size:21 final size:21
Alignment explanation
Indices: 4677912--4677961 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
4677902 GAGTACAAGA
*
4677912 ATCAATACTTGTTAATATAGT
1 ATCAATACTTGTTAATACAGT
**
4677933 ATTGATACTTGTTAATACAGT
1 ATCAATACTTGTTAATACAGT
4677954 ATCAATAC
1 ATCAATAC
4677962 CTAAAACCTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.40
Consensus pattern (21 bp):
ATCAATACTTGTTAATACAGT
Found at i:4679832 original size:20 final size:19
Alignment explanation
Indices: 4679796--4679837 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
4679786 ATTAGGTTAC
4679796 TTTTAGTTAGTTATTTTAA
1 TTTTAGTTAGTTATTTTAA
* *
4679815 TTTTATGTTATTTCTTTTAA
1 TTTTA-GTTAGTTATTTTAA
4679835 TTT
1 TTT
4679838 GTTTATTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.21, C:0.02, G:0.07, T:0.69
Consensus pattern (19 bp):
TTTTAGTTAGTTATTTTAA
Found at i:4681879 original size:34 final size:34
Alignment explanation
Indices: 4681831--4681916 Score: 102
Period size: 34 Copynumber: 2.5 Consensus size: 34
4681821 AAGAGAAATG
4681831 AGCTTTTTACGAGATCAAACGAAACCCTCACAAT
1 AGCTTTTTACGAGATCAAACGAAACCCTCACAAT
* ** *
4681865 AGCTTTTTATGAGATCAAGTGAAACCTTCACAAT
1 AGCTTTTTACGAGATCAAACGAAACCCTCACAAT
* *
4681899 -GCTTCTTCACAAGATCAA
1 AGCTT-TTTACGAGATCAA
4681917 GCTTACAAAT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
33 4 0.09
34 40 0.91
ACGTcount: A:0.36, C:0.23, G:0.13, T:0.28
Consensus pattern (34 bp):
AGCTTTTTACGAGATCAAACGAAACCCTCACAAT
Found at i:4688921 original size:21 final size:20
Alignment explanation
Indices: 4688870--4688921 Score: 50
Period size: 21 Copynumber: 2.5 Consensus size: 20
4688860 TTTGCAAGTT
4688870 GAGTTGGAACATTCCAAAATA
1 GAGTTGGAA-ATTCCAAAATA
* * **
4688891 GATTTTGAAATTTTAAAATTA
1 GAGTTGGAAATTCCAAAA-TA
4688912 GAGTTGGAAA
1 GAGTTGGAAA
4688922 ATAAATCTGA
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
20 7 0.29
21 17 0.71
ACGTcount: A:0.42, C:0.06, G:0.19, T:0.33
Consensus pattern (20 bp):
GAGTTGGAAATTCCAAAATA
Found at i:4694916 original size:19 final size:19
Alignment explanation
Indices: 4694892--4694929 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
4694882 GATAGTATTA
4694892 TGGTATTTTAACTGCTGCT
1 TGGTATTTTAACTGCTGCT
*
4694911 TGGTATTTTAACTGTTGCT
1 TGGTATTTTAACTGCTGCT
4694930 GATAAAAATC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.16, C:0.13, G:0.21, T:0.50
Consensus pattern (19 bp):
TGGTATTTTAACTGCTGCT
Found at i:4694950 original size:79 final size:79
Alignment explanation
Indices: 4694811--4694968 Score: 262
Period size: 79 Copynumber: 2.0 Consensus size: 79
4694801 TCTTACTATC
* * *
4694811 TATGATATTTTAACTGCTGCTTGGTATATTAACTGTTGCTGATGAAAATCTGGGGTTGTATTGAT
1 TATGATATTTTAACTGCTGCTTGGTATATTAACTGTTGCTGATAAAAATCTAGGGCTGTATTGAT
*
4694876 AATTGGGATAGTAT
66 AATTAGGATAGTAT
* *
4694890 TATGGTATTTTAACTGCTGCTTGGTATTTTAACTGTTGCTGATAAAAATCTAGGGCTGTATTGAT
1 TATGATATTTTAACTGCTGCTTGGTATATTAACTGTTGCTGATAAAAATCTAGGGCTGTATTGAT
4694955 AATTAGGATAGTAT
66 AATTAGGATAGTAT
4694969 GTTGATGACT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
79 73 1.00
ACGTcount: A:0.27, C:0.08, G:0.23, T:0.42
Consensus pattern (79 bp):
TATGATATTTTAACTGCTGCTTGGTATATTAACTGTTGCTGATAAAAATCTAGGGCTGTATTGAT
AATTAGGATAGTAT
Found at i:4698587 original size:20 final size:20
Alignment explanation
Indices: 4698559--4698604 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
4698549 TTTTGACCCC
* *
4698559 ATTTAACTTATTGGAGTATA
1 ATTTGACTTATTGAAGTATA
*
4698579 ATTTGACTTATTGAAGTATG
1 ATTTGACTTATTGAAGTATA
4698599 ATTTGA
1 ATTTGA
4698605 GGTTTAGAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.33, C:0.04, G:0.17, T:0.46
Consensus pattern (20 bp):
ATTTGACTTATTGAAGTATA
Found at i:4707805 original size:12 final size:12
Alignment explanation
Indices: 4707779--4707869 Score: 53
Period size: 12 Copynumber: 7.2 Consensus size: 12
4707769 ATTTGAATCA
*
4707779 TTATTATT-GTT
1 TTATTATTATTT
4707790 TTATTATTATTT
1 TTATTATTATTT
*
4707802 TTATATATTTTTT
1 TTAT-TATTATTT
* *
4707815 CTTCTCTCTT-TTT
1 -TTAT-TATTATTT
4707828 TTATCTATTATTT
1 TTAT-TATTATTT
4707841 GCTTATTTATTA-TT
1 --TTA-TTATTATTT
4707855 TTATTTATTATTT
1 TTA-TTATTATTT
4707868 TT
1 TT
4707870 TTGAATGATT
Statistics
Matches: 65, Mismatches: 7, Indels: 14
0.76 0.08 0.16
Matches are distributed among these distances:
11 8 0.12
12 23 0.35
13 17 0.26
14 8 0.12
15 8 0.12
16 1 0.02
ACGTcount: A:0.19, C:0.07, G:0.02, T:0.73
Consensus pattern (12 bp):
TTATTATTATTT
Found at i:4707871 original size:15 final size:15
Alignment explanation
Indices: 4707823--4707871 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
4707813 TTCTTCTCTC
*
4707823 TTTTTTTATCTATTA
1 TTTTTTTATTTATTA
**
4707838 TTTGCTTATTTATTA
1 TTTTTTTATTTATTA
4707853 ---TTTTATTTATTA
1 TTTTTTTATTTATTA
4707865 TTTTTTT
1 TTTTTTT
4707872 GAATGATTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 6
0.70 0.14 0.16
Matches are distributed among these distances:
12 10 0.38
15 16 0.62
ACGTcount: A:0.18, C:0.04, G:0.02, T:0.76
Consensus pattern (15 bp):
TTTTTTTATTTATTA
Found at i:4708107 original size:16 final size:16
Alignment explanation
Indices: 4708088--4708121 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
4708078 TATTTAGTAT
4708088 TTATTTTATTTT-TTTA
1 TTATTTT-TTTTATTTA
4708104 TTATTTTTTTTATTTA
1 TTATTTTTTTTATTTA
4708120 TT
1 TT
4708122 TGTAGCAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (16 bp):
TTATTTTTTTTATTTA
Found at i:4708108 original size:20 final size:21
Alignment explanation
Indices: 4708075--4708122 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
4708065 TTTTTTCATT
4708075 TTTTATTTAGTATTTATTTTA
1 TTTTATTTAGTATTTATTTTA
* *
4708096 TTTT-TTTATTATTTTTTTTA
1 TTTTATTTAGTATTTATTTTA
4708116 -TTTATTT
1 TTTTATTT
4708123 GTAGCAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 3 0.12
20 17 0.71
21 4 0.17
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79
Consensus pattern (21 bp):
TTTTATTTAGTATTTATTTTA
Found at i:4708111 original size:12 final size:13
Alignment explanation
Indices: 4708073--4708122 Score: 52
Period size: 12 Copynumber: 4.1 Consensus size: 13
4708063 TATTTTTTCA
*
4708073 TTTTTTATTTAGT
1 TTTTTTATTTATT
* *
4708086 ATTTAT-TTTA-T
1 TTTTTTATTTATT
4708097 TTTTTTA-TTATT
1 TTTTTTATTTATT
4708109 TTTTTTATTTATT
1 TTTTTTATTTATT
4708122 T
1 T
4708123 GTAGCAAATA
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
11 8 0.27
12 12 0.40
13 10 0.33
ACGTcount: A:0.18, C:0.00, G:0.02, T:0.80
Consensus pattern (13 bp):
TTTTTTATTTATT
Found at i:4709475 original size:38 final size:38
Alignment explanation
Indices: 4709414--4709686 Score: 370
Period size: 38 Copynumber: 7.2 Consensus size: 38
4709404 AGGTAATGAC
* * **
4709414 ACTTTTAAGAATAAACTCCTCAAAATTGAGGCAACGAA
1 ACTTTTAAAAATGAACTCCTCAAAGCTGAGGCAACGAA
* * ** * *
4709452 ACTTCTT-TAAACGAACTTTTCAAAGCTGAGGCAATGAG
1 ACTT-TTAAAAATGAACTCCTCAAAGCTGAGGCAACGAA
* *
4709490 ACTTTTAAAAATGAACTCTTTAAAGCTGAGGCAACGAA
1 ACTTTTAAAAATGAACTCCTCAAAGCTGAGGCAACGAA
* *
4709528 ACTTTTAAAAATGAACTCCTCAAAACTGAGGCAACGAG
1 ACTTTTAAAAATGAACTCCTCAAAGCTGAGGCAACGAA
*
4709566 ACTTTTTAAAAATGAACTCCTCAAAGTTGAGGCAACGAA
1 AC-TTTTAAAAATGAACTCCTCAAAGCTGAGGCAACGAA
4709605 ACTTTTAAAAATGAACTCCTCAAAGCTGAGGCAACGAA
1 ACTTTTAAAAATGAACTCCTCAAAGCTGAGGCAACGAA
4709643 ACTTTT-AAAATGAACTCCTCAAAGCTGAGGCAACGAA
1 ACTTTTAAAAATGAACTCCTCAAAGCTGAGGCAACGAA
4709680 ACCTTTT
1 A-CTTTT
4709687 TTCTTTTTTA
Statistics
Matches: 207, Mismatches: 24, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
37 34 0.16
38 136 0.66
39 37 0.18
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.25
Consensus pattern (38 bp):
ACTTTTAAAAATGAACTCCTCAAAGCTGAGGCAACGAA
Found at i:4721719 original size:21 final size:22
Alignment explanation
Indices: 4721693--4721752 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
4721683 ATATTTTTTT
4721693 TCATTTTTTATTATTT-A-ATTA
1 TCATTTTTT-TTATTTCATATTA
*
4721714 TTATTTTCATTTTATTTCATATTA
1 TCATTTT--TTTTATTTCATATTA
*
4721738 TCATTTTTTTAATTT
1 TCATTTTTTTTATTT
4721753 TTTATTCTCT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
21 6 0.19
22 13 0.41
23 3 0.09
24 10 0.31
ACGTcount: A:0.25, C:0.07, G:0.00, T:0.68
Consensus pattern (22 bp):
TCATTTTTTTTATTTCATATTA
Found at i:4721747 original size:27 final size:27
Alignment explanation
Indices: 4721687--4721757 Score: 74
Period size: 27 Copynumber: 2.6 Consensus size: 27
4721677 AATTATATAT
* *
4721687 TTTTTTTCATTTTTTATTATTTAATTA
1 TTTTTTTCATTTTTTATCATTTAATCA
*
4721714 TTATTTTCATTTTATT-TCATATT-ATCA
1 TTTTTTTCATTTT-TTATCAT-TTAATCA
*
4721741 TTTTTTTAATTTTTTAT
1 TTTTTTTCATTTTTTAT
4721758 TCTCTTATGT
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
26 2 0.06
27 30 0.83
28 4 0.11
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.72
Consensus pattern (27 bp):
TTTTTTTCATTTTTTATCATTTAATCA
Found at i:4721758 original size:22 final size:22
Alignment explanation
Indices: 4721723--4721779 Score: 55
Period size: 22 Copynumber: 2.6 Consensus size: 22
4721713 ATTATTTTCA
**
4721723 TTTTATTTCATATTATCATT-T-
1 TTTTATTTTTTATTATC-TTATG
*
4721744 TTTTAATTTTTTATTCTCTTATG
1 TTTT-ATTTTTTATTATCTTATG
4721767 TTTTATTTTTTAT
1 TTTTATTTTTTAT
4721780 ATTCTAAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
21 6 0.20
22 20 0.67
23 4 0.13
ACGTcount: A:0.19, C:0.07, G:0.02, T:0.72
Consensus pattern (22 bp):
TTTTATTTTTTATTATCTTATG
Found at i:4721765 original size:27 final size:26
Alignment explanation
Indices: 4721687--4721765 Score: 70
Period size: 27 Copynumber: 2.9 Consensus size: 26
4721677 AATTATATAT
* *
4721687 TTTTTTTCATTTTTTATTATTTAATTA
1 TTTTTTTCATTTTTTATTCTTT-ATCA
* *
4721714 TTATTTTCATTTTAT-TTCATATTATCA
1 TTTTTTTCATTTTTTATTC-T-TTATCA
*
4721741 TTTTTTTAATTTTTTATTCTCTTAT
1 TTTTTTTCATTTTTTATTCT-TTAT
4721766 GTTTTATTTT
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
26 2 0.05
27 34 0.83
28 5 0.12
ACGTcount: A:0.22, C:0.08, G:0.00, T:0.71
Consensus pattern (26 bp):
TTTTTTTCATTTTTTATTCTTTATCA
Found at i:4722065 original size:14 final size:14
Alignment explanation
Indices: 4722046--4722141 Score: 69
Period size: 15 Copynumber: 7.0 Consensus size: 14
4722036 TATTTGAATC
*
4722046 ATTATTATTGTTTT
1 ATTATTATTATTTT
4722060 ATTATTATTATTTT
1 ATTATTATTATTTT
4722074 A-TA-TATT-TTTT
1 ATTATTATTATTTT
* *
4722085 CTT-TTCTCT-TTTT
1 ATTATTAT-TATTTT
*
4722098 -TTATCTATTATTTG
1 ATTAT-TATTATTTT
*
4722112 CTTATTTATTATTTT
1 ATTA-TTATTATTTT
4722127 ATTTATTATTATTTT
1 A-TTATTATTATTTT
4722142 TGAATGATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 17
0.73 0.08 0.19
Matches are distributed among these distances:
11 4 0.06
12 9 0.14
13 9 0.14
14 19 0.29
15 21 0.32
16 4 0.06
ACGTcount: A:0.21, C:0.05, G:0.02, T:0.72
Consensus pattern (14 bp):
ATTATTATTATTTT
Found at i:4722080 original size:9 final size:8
Alignment explanation
Indices: 4722047--4722141 Score: 51
Period size: 8 Copynumber: 12.2 Consensus size: 8
4722037 ATTTGAATCA
4722047 TTATTATT
1 TTATTATT
4722055 GTT-TTATT
1 -TTATTATT
4722063 ATTATTATT
1 -TTATTATT
4722072 TTATATATT
1 TTAT-TATT
*
4722081 TT-TTCTT
1 TTATTATT
*
4722088 TTCTCT-TT
1 TTAT-TATT
4722096 TT-TTA-T
1 TTATTATT
*
4722102 CTATTATT
1 TTATTATT
**
4722110 TGCTTA-T
1 TTATTATT
4722117 TTATTATT
1 TTATTATT
*
4722125 TTATT-TA
1 TTATTATT
4722132 TTATTATT
1 TTATTATT
4722140 TT
1 TT
4722142 TGAATGATTT
Statistics
Matches: 67, Mismatches: 10, Indels: 19
0.70 0.10 0.20
Matches are distributed among these distances:
6 3 0.04
7 20 0.30
8 30 0.45
9 14 0.21
ACGTcount: A:0.20, C:0.05, G:0.02, T:0.73
Consensus pattern (8 bp):
TTATTATT
Found at i:4722359 original size:15 final size:14
Alignment explanation
Indices: 4722336--4722378 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
4722326 TGTCATGGTG
*
4722336 TATTATTATTATTTT
1 TATTTTTATT-TTTT
*
4722351 TATTTTTATTTTCGT
1 TATTTTTATTTT-TT
4722366 TATTTTTATTTTT
1 TATTTTTATTTTT
4722379 ATCATATATT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
14 2 0.08
15 22 0.92
ACGTcount: A:0.19, C:0.02, G:0.02, T:0.77
Consensus pattern (14 bp):
TATTTTTATTTTTT
Found at i:4722361 original size:6 final size:6
Alignment explanation
Indices: 4722338--4722380 Score: 50
Period size: 6 Copynumber: 6.7 Consensus size: 6
4722328 TCATGGTGTA
*
4722338 TTATTA TTATTT TTATTT TTATTTT CGTTATTT TTATTT TTAT
1 TTATTT TTATTT TTATTT TTA-TTT --TTATTT TTATTT TTAT
4722381 CATATATTTG
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
6 24 0.73
7 3 0.09
8 3 0.09
9 3 0.09
ACGTcount: A:0.19, C:0.02, G:0.02, T:0.77
Consensus pattern (6 bp):
TTATTT
Found at i:4722994 original size:75 final size:75
Alignment explanation
Indices: 4722880--4723088 Score: 231
Period size: 75 Copynumber: 2.8 Consensus size: 75
4722870 TCGGCCACTA
* * * * * * *
4722880 CCCAACGGTCTGCTCTCCCCAACCGACAGG-GTCGCTCCCCCAATGGTCAGCTCTCCCCAATCGG
1 CCCAACGGTCGGCTCTCCCCAACCGGC-GGCGTTGTTCCCCCAATGGTCGGCTCTCCCCAACCGA
4722944 CGACGTCGCTC
65 CGACGTCGCTC
* * *
4722955 CCCAACGATCGGCTCTCCCCTACCGGCGGCGTTGTTCCCCAAATGGTCGGCTCTCCCCAACCGAC
1 CCCAACGGTCGGCTCTCCCCAACCGGCGGCGTTGTTCCCCCAATGGTCGGCTCTCCCCAACCGAC
* *
4723020 GGCGTGGCTC
66 GACGTCGCTC
* * * * *
4723030 CCCTAACGGTAGGCTCTCCCCAACTGGCGACGTTGCTCCCCCCAACGGTCGGCTCTCCC
1 CCC-AACGGTCGGCTCTCCCCAACCGGCGGCGTTG-TTCCCCCAATGGTCGGCTCTCCC
4723089 AAAACAGATC
Statistics
Matches: 111, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
74 2 0.02
75 63 0.57
76 26 0.23
77 20 0.18
ACGTcount: A:0.14, C:0.44, G:0.23, T:0.18
Consensus pattern (75 bp):
CCCAACGGTCGGCTCTCCCCAACCGGCGGCGTTGTTCCCCCAATGGTCGGCTCTCCCCAACCGAC
GACGTCGCTC
Found at i:4723090 original size:38 final size:38
Alignment explanation
Indices: 4722880--4723088 Score: 206
Period size: 38 Copynumber: 5.5 Consensus size: 38
4722870 TCGGCCACTA
* * * *
4722880 CCCAACGGTCTGCTCTCCCCAACCGAC-AGGGTCGCTCC
1 CCCAACGGTCGGCTCTCCCCAACCGGCGA-CGTTGCTCC
* * * *
4722918 CCCAATGGTCAGCTCTCCCCAATCGGCGACGTCGCT-C
1 CCCAACGGTCGGCTCTCCCCAACCGGCGACGTTGCTCC
* * * *
4722955 CCCAACGATCGGCTCTCCCCTACCGGCGGCGTTGTTCC
1 CCCAACGGTCGGCTCTCCCCAACCGGCGACGTTGCTCC
* * * * *
4722993 CCAAATGGTCGGCTCTCCCCAACCGACGGCGTGGCTCC
1 CCCAACGGTCGGCTCTCCCCAACCGGCGACGTTGCTCC
* * *
4723031 CCTAACGGTAGGCTCTCCCCAACTGGCGACGTTGCTCCC
1 CCCAACGGTCGGCTCTCCCCAACCGGCGACGTTGCT-CC
4723070 CCCAACGGTCGGCTCTCCC
1 CCCAACGGTCGGCTCTCCC
4723089 AAAACAGATC
Statistics
Matches: 139, Mismatches: 29, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
37 29 0.21
38 90 0.65
39 20 0.14
ACGTcount: A:0.14, C:0.44, G:0.23, T:0.18
Consensus pattern (38 bp):
CCCAACGGTCGGCTCTCCCCAACCGGCGACGTTGCTCC
Found at i:4723284 original size:14 final size:14
Alignment explanation
Indices: 4723265--4723291 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
4723255 TATTTTCAAT
4723265 TTTTTTGGTATATA
1 TTTTTTGGTATATA
4723279 TTTTTTGGTATAT
1 TTTTTTGGTATAT
4723292 TTCTTTGATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.19, C:0.00, G:0.15, T:0.67
Consensus pattern (14 bp):
TTTTTTGGTATATA
Found at i:4723607 original size:16 final size:15
Alignment explanation
Indices: 4723586--4723617 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
4723576 CTCGCTCTCC
4723586 TTTTTTCCTTCTTTTT
1 TTTTTTCCTT-TTTTT
4723602 TTTTTTCCTTTTTTT
1 TTTTTTCCTTTTTTT
4723617 T
1 T
4723618 GTTTATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTTTTCCTTTTTTT
Found at i:4726634 original size:21 final size:21
Alignment explanation
Indices: 4726589--4726634 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
4726579 GTATTTTAGT
*
4726589 TAAAAAGGAAAAATATATAGT
1 TAAAAAGGAAAAATATATAGG
*
4726610 TAAAAAGGAAATAATCTA-AGG
1 TAAAAAGGAAA-AATATATAGG
4726631 TAAA
1 TAAA
4726635 TGCAATTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.61, C:0.02, G:0.15, T:0.22
Consensus pattern (21 bp):
TAAAAAGGAAAAATATATAGG
Found at i:4728581 original size:35 final size:35
Alignment explanation
Indices: 4728512--4728582 Score: 90
Period size: 35 Copynumber: 2.0 Consensus size: 35
4728502 TTTCACCAAG
* * *
4728512 CTTTTACAATGGTTTTTACCAGACTCAGCCAAAAC
1 CTTTCACAATAGTTTTTACCAGACTCAACCAAAAC
*
4728547 CTTTCACAATAGTTTTTACCAGGA-TCAACTAAAAC
1 CTTTCACAATAGTTTTTACCA-GACTCAACCAAAAC
4728582 C
1 C
4728583 CAAAACCTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
35 29 0.94
36 2 0.06
ACGTcount: A:0.34, C:0.25, G:0.10, T:0.31
Consensus pattern (35 bp):
CTTTCACAATAGTTTTTACCAGACTCAACCAAAAC
Found at i:4729104 original size:20 final size:20
Alignment explanation
Indices: 4729075--4729119 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
4729065 CACTTAGTCA
* * *
4729075 ACTAATTTATTTCTTGGTCG
1 ACTAACTTATTCCTTGGCCG
4729095 ACTAACTTATTCCTTGGCCG
1 ACTAACTTATTCCTTGGCCG
4729115 ACTAA
1 ACTAA
4729120 GTCTTTTCTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.24, C:0.22, G:0.13, T:0.40
Consensus pattern (20 bp):
ACTAACTTATTCCTTGGCCG
Found at i:4730737 original size:19 final size:19
Alignment explanation
Indices: 4730713--4730750 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
4730703 CTATTTAATT
*
4730713 TATTGGAGTATGATTTGAG
1 TATTGGAGTATAATTTGAG
4730732 TATTGGAGTATAATTTGAG
1 TATTGGAGTATAATTTGAG
4730751 GGTTTGACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.42
Consensus pattern (19 bp):
TATTGGAGTATAATTTGAG
Found at i:4730959 original size:21 final size:20
Alignment explanation
Indices: 4730925--4730969 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
4730915 AATTTTTTAG
*
4730925 TTTTTGGGGCAAAAATGTAA
1 TTTTTGAGGCAAAAATGTAA
4730945 TTTTTGAGGCAAAAATGTAA
1 TTTTTGAGGCAAAAATGTAA
4730965 TTTTT
1 TTTTT
4730970 AACTTTACGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.33, C:0.04, G:0.20, T:0.42
Consensus pattern (20 bp):
TTTTTGAGGCAAAAATGTAA
Found at i:4740733 original size:21 final size:20
Alignment explanation
Indices: 4740677--4740733 Score: 51
Period size: 21 Copynumber: 2.8 Consensus size: 20
4740667 TCTATTTTTT
*
4740677 TTTCCAATTCCAATTTTAGAG
1 TTTCCAATT-CAATTTTAGAA
* * * *
4740698 TTTCAAAATCTATTTTTGAA
1 TTTCCAATTCAATTTTAGAA
4740718 TGTTCCAATTCAATTT
1 T-TTCCAATTCAATTT
4740734 GCAGAAAATT
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
20 9 0.33
21 18 0.67
ACGTcount: A:0.30, C:0.16, G:0.07, T:0.47
Consensus pattern (20 bp):
TTTCCAATTCAATTTTAGAA
Found at i:4743791 original size:6 final size:6
Alignment explanation
Indices: 4743761--4743813 Score: 52
Period size: 6 Copynumber: 8.5 Consensus size: 6
4743751 TCCAAACAAT
* * * *
4743761 TAAAAC TAATAC TAAAGC TATAAC TAAAAC TAATAAAC TAAAAA TAAAAC
1 TAAAAC TAAAAC TAAAAC TAAAAC TAAAAC T-A-AAAC TAAAAC TAAAAC
4743811 TAA
1 TAA
4743814 TCTAAAATTT
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
6 30 0.81
7 2 0.05
8 5 0.14
ACGTcount: A:0.62, C:0.13, G:0.02, T:0.23
Consensus pattern (6 bp):
TAAAAC
Found at i:4746675 original size:19 final size:18
Alignment explanation
Indices: 4746653--4746688 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
4746643 CTTTTTCTTT
4746653 CAGCAGCTTCTTCATTCTC
1 CAGCAGCTTCTTC-TTCTC
4746672 CAGCAGCTTCTTCTTCT
1 CAGCAGCTTCTTCTTCT
4746689 TCTTCTTCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.14, C:0.36, G:0.11, T:0.39
Consensus pattern (18 bp):
CAGCAGCTTCTTCTTCTC
Found at i:4747574 original size:43 final size:43
Alignment explanation
Indices: 4747489--4747611 Score: 160
Period size: 43 Copynumber: 2.9 Consensus size: 43
4747479 GTGATGATAT
*
4747489 TGACCCGGCTATGTGAGAGT-GGGAATGCGCATAAGCTAATGC
1 TGACCCGGCTATGTGAGAGTAGGGAGTGCGCATAAGCTAATGC
* *
4747531 TGACCTGGCTATGTGCGAGTAGGGAGTGCGCATAAGCCT-ATGC
1 TGACCCGGCTATGTGAGAGTAGGGAGTGCGCATAAG-CTAATGC
* * * *
4747574 TGACCCAGCTATGTGGGAGTAGGGAGTGCACATGAGCT
1 TGACCCGGCTATGTGAGAGTAGGGAGTGCGCATAAGCT
4747612 GATGATGATG
Statistics
Matches: 71, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
42 20 0.28
43 49 0.69
44 2 0.03
ACGTcount: A:0.24, C:0.20, G:0.35, T:0.22
Consensus pattern (43 bp):
TGACCCGGCTATGTGAGAGTAGGGAGTGCGCATAAGCTAATGC
Found at i:4755292 original size:43 final size:43
Alignment explanation
Indices: 4755216--4755342 Score: 193
Period size: 43 Copynumber: 3.0 Consensus size: 43
4755206 GTGATGATAT
* * *
4755216 TGACCCGGTTATGTGTGAAT-GGGAGTGCACATAAGCCGATGC
1 TGACCCGGCTATGTGCGAGTAGGGAGTGCACATAAGCCGATGC
4755258 TGACCCGGCTATGTGCGAGTAGGGAGTGCACATAAGCCGATGC
1 TGACCCGGCTATGTGCGAGTAGGGAGTGCACATAAGCCGATGC
* * *
4755301 TGACCCAGCTATGTGCGAGTAGGGAGTGCACATGAGCTGATG
1 TGACCCGGCTATGTGCGAGTAGGGAGTGCACATAAGCCGATG
4755343 ATGATAGGAT
Statistics
Matches: 78, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
42 17 0.22
43 61 0.78
ACGTcount: A:0.24, C:0.20, G:0.35, T:0.21
Consensus pattern (43 bp):
TGACCCGGCTATGTGCGAGTAGGGAGTGCACATAAGCCGATGC
Found at i:4755381 original size:2 final size:2
Alignment explanation
Indices: 4755374--4755423 Score: 73
Period size: 2 Copynumber: 25.0 Consensus size: 2
4755364 TGATGGATAC
* *
4755374 AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
4755416 AT AG AT AT
1 AT AT AT AT
4755424 GTGTGTTATA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (2 bp):
AT
Found at i:4765606 original size:21 final size:20
Alignment explanation
Indices: 4765572--4765617 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
4765562 TGTTGAGTAA
4765572 TTTAATTTAAGTT-ATTTTAG
1 TTTAATTTAAGTTAATTTT-G
*
4765592 TTTAATTTTATGTTAATTTTG
1 TTTAA-TTTAAGTTAATTTTG
4765613 TTTAA
1 TTTAA
4765618 ATTACTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 5 0.22
21 13 0.57
22 5 0.22
ACGTcount: A:0.28, C:0.00, G:0.09, T:0.63
Consensus pattern (20 bp):
TTTAATTTAAGTTAATTTTG
Found at i:4776338 original size:2 final size:2
Alignment explanation
Indices: 4776331--4776372 Score: 75
Period size: 2 Copynumber: 20.5 Consensus size: 2
4776321 ATTATGTTGG
4776331 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA GTA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA T
4776373 GTTGTGTANN
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 37 0.95
3 2 0.05
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
TA
Found at i:4781309 original size:49 final size:50
Alignment explanation
Indices: 4781232--4781345 Score: 133
Period size: 49 Copynumber: 2.3 Consensus size: 50
4781222 AATCCACATG
** * *
4781232 GGATTCTTGCTTTTTAACAAGATCAAGCGATAA-CCTTACAATCCACAAAA
1 GGATTCTTGCTTTTTAACAAGAAAAAGCGATAACCCATAAAATCCA-AAAA
**
4781282 GGATTCTTGCTTTTT-ACGGGAAAAAGCGATAACCCATAAAATCCAAAAA
1 GGATTCTTGCTTTTTAACAAGAAAAAGCGATAACCCATAAAATCCAAAAA
* *
4781331 GAATTCTTGTTTTTT
1 GGATTCTTGCTTTTT
4781346 TTTATAAGAA
Statistics
Matches: 55, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
49 30 0.55
50 25 0.45
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32
Consensus pattern (50 bp):
GGATTCTTGCTTTTTAACAAGAAAAAGCGATAACCCATAAAATCCAAAAA
Done.