Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36364294
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2168405 characters in sequence are not A, C, G, or T
File 19 of 91
Found at i:6231405 original size:20 final size:20
Alignment explanation
Indices: 6231382--6231435 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
6231372 GAGCTGGTGA
6231382 TGATGATGATGATGAGCTGG
1 TGATGATGATGATGAGCTGG
* *
6231402 TGATGATGATGATGGGTTGG
1 TGATGATGATGATGAGCTGG
6231422 TGA-GATGATGATGA
1 TGATGATGATGATGA
6231436 TGGTATATAC
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
19 10 0.32
20 21 0.68
ACGTcount: A:0.26, C:0.02, G:0.41, T:0.31
Consensus pattern (20 bp):
TGATGATGATGATGAGCTGG
Found at i:6242840 original size:43 final size:43
Alignment explanation
Indices: 6242679--6242840 Score: 207
Period size: 43 Copynumber: 3.8 Consensus size: 43
6242669 TTCCCAGCTC
* * * * *
6242679 ATGCGCACTCCCTACTCACACATAGCTAGGTCATCACCGGGTT
1 ATGCGCACTCCCTACTCGCACATAACCAAGTCATCATCGGGTT
* **
6242722 ATGCGCACTCCCTACTCGCACATAATCGGGTCATCATCGGGTT
1 ATGCGCACTCCCTACTCGCACATAACCAAGTCATCATCGGGTT
* * *
6242765 ATGCGTACTCCCTACTCGCACATAACCGAGTCATCATCGGCTT
1 ATGCGCACTCCCTACTCGCACATAACCAAGTCATCATCGGGTT
* *
6242808 ATGCGCACTCCTTACTCGCACATAGCCAAGTCA
1 ATGCGCACTCCCTACTCGCACATAACCAAGTCA
6242841 ATATCATTAC
Statistics
Matches: 105, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 105 1.00
ACGTcount: A:0.23, C:0.35, G:0.18, T:0.24
Consensus pattern (43 bp):
ATGCGCACTCCCTACTCGCACATAACCAAGTCATCATCGGGTT
Found at i:6251216 original size:2 final size:2
Alignment explanation
Indices: 6251209--6251236 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
6251199 TAGAAGTCAA
6251209 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6251237 CTTTCTAGAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6256996 original size:62 final size:63
Alignment explanation
Indices: 6256926--6257075 Score: 160
Period size: 63 Copynumber: 2.4 Consensus size: 63
6256916 TCTATGTTTC
* * *
6256926 AAGAATGCAAAGATTGATTCTCAAAA-ACAGAAAGCTCTAAAGGCAAGAAAAATTGACTTCTT
1 AAGAATGCAAAGATCGATTCTCAAAACACAGAAAGCTCTAAAGGAAAGAAAAATTGACTTATT
* ** * * * * *
6256988 AGGAATGCACTGATCGATTTTGAAAACACAGAATGCTCTAGAGGAAAGAAGAATTGACTTATT
1 AAGAATGCAAAGATCGATTCTCAAAACACAGAAAGCTCTAAAGGAAAGAAAAATTGACTTATT
**
6257051 AAGAAT-CAACTTATCGATTCTCAAA
1 AAGAATGCAA-AGATCGATTCTCAAA
6257076 CTCCAAAATG
Statistics
Matches: 70, Mismatches: 16, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
62 22 0.31
63 48 0.69
ACGTcount: A:0.43, C:0.15, G:0.17, T:0.25
Consensus pattern (63 bp):
AAGAATGCAAAGATCGATTCTCAAAACACAGAAAGCTCTAAAGGAAAGAAAAATTGACTTATT
Found at i:6257541 original size:28 final size:28
Alignment explanation
Indices: 6257501--6257635 Score: 155
Period size: 28 Copynumber: 4.8 Consensus size: 28
6257491 GTGTTGTAAA
*
6257501 GGTTATGCTTGATCCTTGAAAAGGCAAT
1 GGTTATGCTTGATCCATGAAAAGGCAAT
* *
6257529 GGTTATGCTTGATCC-TCAAAATGGCAAA
1 GGTTATGCTTGATCCATGAAAA-GGCAAT
* * * * *
6257557 GGTTGTGATTGATCCTTGAAAAGGTAGT
1 GGTTATGCTTGATCCATGAAAAGGCAAT
* *
6257585 GGTTATGCTTGATCCATGAAAAGGTAAG
1 GGTTATGCTTGATCCATGAAAAGGCAAT
*
6257613 GGTTATACTTGATCCATGAAAAG
1 GGTTATGCTTGATCCATGAAAAG
6257636 TAAGGCTTTA
Statistics
Matches: 91, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
27 5 0.05
28 81 0.89
29 5 0.05
ACGTcount: A:0.30, C:0.13, G:0.26, T:0.31
Consensus pattern (28 bp):
GGTTATGCTTGATCCATGAAAAGGCAAT
Found at i:6257625 original size:56 final size:56
Alignment explanation
Indices: 6257496--6257635 Score: 176
Period size: 56 Copynumber: 2.5 Consensus size: 56
6257486 AGGCAGTGTT
*
6257496 GTAAAGGTTATGCTTGATCCTTGAAAAGGCAATGGTTATGCTTGATCCTCAAAATG
1 GTAAAGGTTATACTTGATCCTTGAAAAGGCAATGGTTATGCTTGATCCTCAAAATG
* * * * *
6257552 GCAAAGGTTGTGA-TTGATCCTTGAAAAGGTAGTGGTTATGCTTGATCCATGAAAA-G
1 GTAAAGGTTAT-ACTTGATCCTTGAAAAGGCAATGGTTATGCTTGATCC-TCAAAATG
* *
6257608 GTAAGGGTTATACTTGATCCATGAAAAG
1 GTAAAGGTTATACTTGATCCTTGAAAAG
6257636 TAAGGCTTTA
Statistics
Matches: 71, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
55 1 0.01
56 65 0.92
57 5 0.07
ACGTcount: A:0.31, C:0.12, G:0.26, T:0.31
Consensus pattern (56 bp):
GTAAAGGTTATACTTGATCCTTGAAAAGGCAATGGTTATGCTTGATCCTCAAAATG
Found at i:6263284 original size:22 final size:22
Alignment explanation
Indices: 6263258--6263316 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
6263248 CGAAAGTTTC
*
6263258 TCGCTACAGTGAGAATCCATTT
1 TCGCTACAGCGAGAATCCATTT
* * *
6263280 TCGCTGCAGCGAGAATTCTTTT
1 TCGCTACAGCGAGAATCCATTT
**
6263302 TCGCTGTAGCGAGAA
1 TCGCTACAGCGAGAA
6263317 ATAGGGCAGA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.31
Consensus pattern (22 bp):
TCGCTACAGCGAGAATCCATTT
Found at i:6267783 original size:19 final size:20
Alignment explanation
Indices: 6267751--6267791 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
6267741 AGAAAGAAGT
*
6267751 AAGAAAAGAAAGGAAATGAA
1 AAGAAAAGAAAGGAAAAGAA
6267771 AAGAAAA-AAAGGAAAAGAA
1 AAGAAAAGAAAGGAAAAGAA
6267790 AA
1 AA
6267792 TGAAGAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (20 bp):
AAGAAAAGAAAGGAAAAGAA
Found at i:6267800 original size:14 final size:14
Alignment explanation
Indices: 6267753--6267791 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
6267743 AAAGAAGTAA
* *
6267753 GAAAAGAAAGGAAAT
1 GAAAAGAAA-AAAAG
6267768 GAAAAGAAAAAAAG
1 GAAAAGAAAAAAAG
6267782 GAAAAGAAAA
1 GAAAAGAAAA
6267792 TGAAGAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 13 0.59
15 9 0.41
ACGTcount: A:0.74, C:0.00, G:0.23, T:0.03
Consensus pattern (14 bp):
GAAAAGAAAAAAAG
Found at i:6274512 original size:18 final size:18
Alignment explanation
Indices: 6274489--6274529 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
6274479 AGGTATTTTC
* *
6274489 AATTGGTATCTAGCTTTA
1 AATTGGCATCAAGCTTTA
6274507 AATTGGCATCAAGCTTTA
1 AATTGGCATCAAGCTTTA
*
6274525 TATTG
1 AATTG
6274530 TCTCTTCTCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.29, C:0.12, G:0.17, T:0.41
Consensus pattern (18 bp):
AATTGGCATCAAGCTTTA
Found at i:6276120 original size:36 final size:37
Alignment explanation
Indices: 6276073--6276145 Score: 112
Period size: 36 Copynumber: 2.0 Consensus size: 37
6276063 TAAGAGAAAA
*
6276073 AAAGGTTATGCCTAACCCTTTAAAAGGAAAT-GTTGT
1 AAAGGTTATGCCTAACCCTTGAAAAGGAAATGGTTGT
* *
6276109 AAAGGTTATGCCTAATCCTTGAAAAGGCAATGGTTGT
1 AAAGGTTATGCCTAACCCTTGAAAAGGAAATGGTTGT
6276146 GCTTGATCCT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
36 28 0.85
37 5 0.15
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.30
Consensus pattern (37 bp):
AAAGGTTATGCCTAACCCTTGAAAAGGAAATGGTTGT
Found at i:6276155 original size:28 final size:28
Alignment explanation
Indices: 6276112--6276246 Score: 155
Period size: 28 Copynumber: 4.8 Consensus size: 28
6276102 ATGTTGTAAA
* *
6276112 GGTTATGCCTAATCCTTGAAAAGGCAAT
1 GGTTATGCTTGATCCTTGAAAAGGCAAT
*
6276140 GGTTGTGCTTGATCCTTGAAAAGGCAAT
1 GGTTATGCTTGATCCTTGAAAAGGCAAT
* * * * *
6276168 GATTGTGTTTGATCCTTGAAAAGGTAGT
1 GGTTATGCTTGATCCTTGAAAAGGCAAT
* *
6276196 GGTTACGCTTGATCCATT-AAAAGGCAAG
1 GGTTATGCTTGATCC-TTGAAAAGGCAAT
*
6276224 GGTTATGCTTGATCCATGAAAAG
1 GGTTATGCTTGATCCTTGAAAAG
6276247 TAGGGCTTTA
Statistics
Matches: 89, Mismatches: 16, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
27 1 0.01
28 86 0.97
29 2 0.02
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
GGTTATGCTTGATCCTTGAAAAGGCAAT
Found at i:6278851 original size:42 final size:42
Alignment explanation
Indices: 6278805--6278975 Score: 198
Period size: 42 Copynumber: 4.0 Consensus size: 42
6278795 TGTTGATGTG
** ** *
6278805 GACCCGGCTATGTGCGAGTAACAGTGTACATAAGTCGATGAT
1 GACCCGGCTATGTGCGAGTAGGAGTGCGCATAAGCCGATGAT
*
6278847 GACCCGGCTATGTGTGAGTAGGAGTGCGCATAAGCCGATGAT
1 GACCCGGCTATGTGCGAGTAGGAGTGCGCATAAGCCGATGAT
* *
6278889 GACCCGTCTATGTGCGAGTGGGAGTGCGCATAAGCCGATGAT
1 GACCCGGCTATGTGCGAGTAGGAGTGCGCATAAGCCGATGAT
** * * * * *
6278931 GACCCATCCATGTGCTAGTAGGGAGTGCACATGAGCTGATGAT
1 GACCCGGCTATGTGCGAGTA-GGAGTGCGCATAAGCCGATGAT
6278974 GA
1 GA
6278976 TGGAAGAGTG
Statistics
Matches: 112, Mismatches: 16, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
42 91 0.81
43 21 0.19
ACGTcount: A:0.25, C:0.20, G:0.33, T:0.22
Consensus pattern (42 bp):
GACCCGGCTATGTGCGAGTAGGAGTGCGCATAAGCCGATGAT
Found at i:6282450 original size:2 final size:2
Alignment explanation
Indices: 6282445--6282482 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
6282435 GAATAAAAAA
6282445 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6282483 NTGTCAAAAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6297889 original size:4 final size:4
Alignment explanation
Indices: 6297880--6297910 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
6297870 TTTTACCCCA
6297880 TATG TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TAT
6297911 AATATTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:6298359 original size:2 final size:2
Alignment explanation
Indices: 6298352--6298381 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
6298342 CATCAATGCC
6298352 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6298382 TGGAAGTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6298651 original size:30 final size:30
Alignment explanation
Indices: 6298615--6298679 Score: 121
Period size: 30 Copynumber: 2.2 Consensus size: 30
6298605 CAATCAAACT
6298615 CTTATACTTTTATTTTAAATCAAATAAGTC
1 CTTATACTTTTATTTTAAATCAAATAAGTC
*
6298645 CTTATACTTTTATTTTGAATCAAATAAGTC
1 CTTATACTTTTATTTTAAATCAAATAAGTC
6298675 CTTAT
1 CTTAT
6298680 GACTAATTAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.34, C:0.14, G:0.05, T:0.48
Consensus pattern (30 bp):
CTTATACTTTTATTTTAAATCAAATAAGTC
Found at i:6304352 original size:2 final size:2
Alignment explanation
Indices: 6304345--6304374 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
6304335 ATACAATGCC
6304345 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6304375 TGGAAGTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6304644 original size:30 final size:30
Alignment explanation
Indices: 6304608--6304672 Score: 121
Period size: 30 Copynumber: 2.2 Consensus size: 30
6304598 CAATCAAACT
6304608 CTTATACTTTTATTTTAAATCAAATAAGTC
1 CTTATACTTTTATTTTAAATCAAATAAGTC
*
6304638 CTTATACTTTTATTTTGAATCAAATAAGTC
1 CTTATACTTTTATTTTAAATCAAATAAGTC
6304668 CTTAT
1 CTTAT
6304673 GACTAATTAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.34, C:0.14, G:0.05, T:0.48
Consensus pattern (30 bp):
CTTATACTTTTATTTTAAATCAAATAAGTC
Found at i:6310560 original size:65 final size:64
Alignment explanation
Indices: 6310445--6310565 Score: 170
Period size: 65 Copynumber: 1.9 Consensus size: 64
6310435 TTCCTAGCGC
* * * * *
6310445 TTTCACATAGTGTGAGTAACATTCCACACATGGTGGTTACGTCTACTATGATGGATGATAGTGT
1 TTTCACATAGTATGAGTAACACTCCACACATGGTGATTACATCTAATATGATGGATGATAGTGT
* *
6310509 TTTCACATAGTATGAGGTAACACTCTACACGTGGTGATTACATCTAATATGATGGAT
1 TTTCACATAGTATGA-GTAACACTCCACACATGGTGATTACATCTAATATGATGGAT
6310566 AATAACATTT
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
64 14 0.29
65 35 0.71
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (64 bp):
TTTCACATAGTATGAGTAACACTCCACACATGGTGATTACATCTAATATGATGGATGATAGTGT
Found at i:6311182 original size:10 final size:10
Alignment explanation
Indices: 6311164--6311212 Score: 80
Period size: 10 Copynumber: 4.9 Consensus size: 10
6311154 TTTATTTGAG
*
6311164 GAATTATGAT
1 GAATAATGAT
6311174 GAATAATGAT
1 GAATAATGAT
6311184 GAATAATGAT
1 GAATAATGAT
6311194 GAATAATGAT
1 GAATAATGAT
*
6311204 GAATTATGA
1 GAATAATGA
6311213 GCCTAGAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 37 1.00
ACGTcount: A:0.47, C:0.00, G:0.20, T:0.33
Consensus pattern (10 bp):
GAATAATGAT
Found at i:6311192 original size:20 final size:20
Alignment explanation
Indices: 6311164--6311212 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
6311154 TTTATTTGAG
6311164 GAATTATGATGAATAATGAT
1 GAATTATGATGAATAATGAT
*
6311184 GAATAATGATGAATAATGAT
1 GAATTATGATGAATAATGAT
6311204 GAATTATGA
1 GAATTATGA
6311213 GCCTAGAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.47, C:0.00, G:0.20, T:0.33
Consensus pattern (20 bp):
GAATTATGATGAATAATGAT
Found at i:6314680 original size:28 final size:28
Alignment explanation
Indices: 6314648--6314731 Score: 80
Period size: 28 Copynumber: 3.0 Consensus size: 28
6314638 AATGCATTGG
*
6314648 TTGAGCTTTAGGGATTGAAAATGATCAA
1 TTGAGCTTTATGGATTGAAAATGATCAA
* * * * *
6314676 TTGAG-TTAAATGGATAGAAAATGGTTAC
1 TTGAGCTT-TATGGATTGAAAATGATCAA
*
6314704 TTGAGCTATATGGATTGAAAGATGATCA
1 TTGAGCTTTATGGATTGAAA-ATGATCA
6314732 TGAATGTTAT
Statistics
Matches: 42, Mismatches: 11, Indels: 5
0.72 0.19 0.09
Matches are distributed among these distances:
27 2 0.05
28 34 0.81
29 6 0.14
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.32
Consensus pattern (28 bp):
TTGAGCTTTATGGATTGAAAATGATCAA
Found at i:6320849 original size:36 final size:36
Alignment explanation
Indices: 6320787--6320891 Score: 138
Period size: 36 Copynumber: 2.9 Consensus size: 36
6320777 CTATCAATCT
* *
6320787 TGCCTTTTCAACAGAGTCAGGAGTAACCTTTACAACA
1 TGCCTTTT-AACAGAATCAGGAGTAACCTTTACAAAA
* * *
6320824 TGCCTTTTAACAAAATCAGGCGTAACCTTCACAAAA
1 TGCCTTTTAACAGAATCAGGAGTAACCTTTACAAAA
* *
6320860 TGCCTTTTAACAGAATTAGGTGTAACCTTTAC
1 TGCCTTTTAACAGAATCAGGAGTAACCTTTAC
6320892 CAAGACATTA
Statistics
Matches: 59, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
36 51 0.86
37 8 0.14
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.30
Consensus pattern (36 bp):
TGCCTTTTAACAGAATCAGGAGTAACCTTTACAAAA
Found at i:6326090 original size:42 final size:42
Alignment explanation
Indices: 6326031--6326149 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
6326021 GTTGATGTGG
* *
6326031 ACCCGACTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCTA
1 ACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCTA
*
6326073 ACCCGGCTATGTGCGAGTGGGAGTGCACATAAGTCGTTGCTA
1 ACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCTA
* *
6326115 ACCCGGCTATGTGCAAGTGGGAGTGCGCATAAGCC
1 ACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCC
6326150 ATTACATATG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.24, C:0.24, G:0.32, T:0.21
Consensus pattern (42 bp):
ACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCTA
Found at i:6326584 original size:60 final size:60
Alignment explanation
Indices: 6326485--6326691 Score: 263
Period size: 60 Copynumber: 3.5 Consensus size: 60
6326475 CGAAATTTAT
* * * * * * * *
6326485 TCTCGCTGTAGCGAGAAACTTTTTGTTTCTAGGTTACAATTTCGTTGCAGCGAGATTGAA
1 TCTCGCTGCAGCGAAAAACATTTTGTTACTAGGTCACAATTTTGCTGCAGCGAGATTCAA
* *
6326545 TCTCGCTGCAGCGAAAAACATTATGTTACTGGGTCACAATTTTGCTGCAGCGAGATTCAA
1 TCTCGCTGCAGCGAAAAACATTTTGTTACTAGGTCACAATTTTGCTGCAGCGAGATTCAA
** * *
6326605 TCTCGCTATAGAGAAAAACATTTTGTTACTAGGTCACAATTTTGCTGCAGTGAGATTCAA
1 TCTCGCTGCAGCGAAAAACATTTTGTTACTAGGTCACAATTTTGCTGCAGCGAGATTCAA
*
6326665 TCTCGCTGCAGCAAAAAAC-TTTCTGTT
1 TCTCGCTGCAGCGAAAAACATTT-TGTT
6326692 TTGATCTTCT
Statistics
Matches: 126, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
59 3 0.02
60 123 0.98
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (60 bp):
TCTCGCTGCAGCGAAAAACATTTTGTTACTAGGTCACAATTTTGCTGCAGCGAGATTCAA
Found at i:6333929 original size:42 final size:42
Alignment explanation
Indices: 6333870--6333994 Score: 187
Period size: 42 Copynumber: 3.0 Consensus size: 42
6333860 TGTTGATGTG
* **
6333870 GACCCAGCTATGTGCGAGTAAGAGTGCACATAAGCCGTTGCT
1 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
*
6333912 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGTT
1 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
* * *
6333954 GACCAGACTTTGTGCGAGTGGGAGTGCACATAAGCCGTTGC
1 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGC
6333995 ATATGAGATG
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.33, T:0.22
Consensus pattern (42 bp):
GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
Found at i:6334428 original size:60 final size:60
Alignment explanation
Indices: 6334329--6334476 Score: 188
Period size: 60 Copynumber: 2.5 Consensus size: 60
6334319 CGAAATTTAT
* * * * * *
6334329 TCTCGCTGTAGCGAGAAACTTTTTGTTTCTAGGTTACAATTTCGTTGCAGCGAGATTGAA
1 TCTCGCTGTAGCGAAAAACATTTTGTTACTAGGTCACAATTTCGCTGCAGCGAGATTCAA
* * * *
6334389 TCTCGCTGCAGCGAAAAACATTATGTTACTGGGTCACAATTTTGCTGCAGCGAGATTCAA
1 TCTCGCTGTAGCGAAAAACATTTTGTTACTAGGTCACAATTTCGCTGCAGCGAGATTCAA
* *
6334449 TCTCGCTATAGAGAAAAACATTTTGTTA
1 TCTCGCTGTAGCGAAAAACATTTTGTTA
6334477 NTTCTGATTC
Statistics
Matches: 74, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
60 74 1.00
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (60 bp):
TCTCGCTGTAGCGAAAAACATTTTGTTACTAGGTCACAATTTCGCTGCAGCGAGATTCAA
Found at i:6348437 original size:22 final size:23
Alignment explanation
Indices: 6348412--6348458 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
6348402 ATTTATAAAA
6348412 AAATATTAATA-AATTATTATTT
1 AAATATTAATATAATTATTATTT
* * *
6348434 AAATGTTAATATGATTATTTTTT
1 AAATATTAATATAATTATTATTT
6348457 AA
1 AA
6348459 TTTACAAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 10 0.48
23 11 0.52
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (23 bp):
AAATATTAATATAATTATTATTT
Found at i:6348513 original size:26 final size:22
Alignment explanation
Indices: 6348464--6348521 Score: 71
Period size: 26 Copynumber: 2.5 Consensus size: 22
6348454 TTTAATTTAC
6348464 AAAATATTAATAATTTATAATT
1 AAAATATTAATAATTTATAATT
*
6348486 AAAATATTAATTTAATTTTTAAGTTT
1 AAAATATTAA--TAATTTATAA--TT
6348512 AAAATATTAA
1 AAAATATTAA
6348522 CTTTTTATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
22 10 0.32
24 9 0.29
26 12 0.39
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (22 bp):
AAAATATTAATAATTTATAATT
Found at i:6348704 original size:24 final size:24
Alignment explanation
Indices: 6348670--6348717 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
6348660 ATGAATAAAT
6348670 TGTTGTAAAATATAACTTTCAAAG
1 TGTTGTAAAATATAACTTTCAAAG
* *
6348694 TGTTGTGAAATATAACTTTGAAAG
1 TGTTGTAAAATATAACTTTCAAAG
6348718 AGAATATTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.40, C:0.06, G:0.17, T:0.38
Consensus pattern (24 bp):
TGTTGTAAAATATAACTTTCAAAG
Found at i:6349545 original size:19 final size:19
Alignment explanation
Indices: 6349521--6349558 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
6349511 CCATTTGACT
6349521 TATTGGAGTATGATTTGAG
1 TATTGGAGTATGATTTGAG
6349540 TATTGGAGTATGATTTGAG
1 TATTGGAGTATGATTTGAG
6349559 GTTTATAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.00, G:0.32, T:0.42
Consensus pattern (19 bp):
TATTGGAGTATGATTTGAG
Found at i:6354945 original size:187 final size:185
Alignment explanation
Indices: 6354630--6355001 Score: 726
Period size: 187 Copynumber: 2.0 Consensus size: 185
6354620 AATCTCATTA
6354630 TGGAGCCCTTCCTTGAAATAACTGGCCTGATCTTGCTCAGATTTCACCAGATTCGGCACATATAA
1 TGGAGCCCTTCCTTGAAATAACTGGCCTGATCTTGCTCAGATTTCACCAGATTCGGCACATATAA
6354695 TATCAACTCATTAAAACAAGTCTTGTACTCCTCTACAGTTAGATTTCCTTGTTTCAATTGTTTCA
66 TATCAACTCATTAAAACAAGTCTTGTACTCCTCTACAGTTAGATTTCCTTGTTTCAATTGTTTCA
6354760 AGCTCAGAAATTCTCTTTTCTTTTCTTTCTGATGAAAGTAAGTGAAATATTAGACC
131 AGCTCAGAAATTCTCTTTTCTTTTCTTTCTGATGAAAGTAAGTGAAATATT-GACC
6354816 NTGGAGCCCTTCCTTGAAATAACTGGCCTGATCTTGCTCAGATTTCACCAGATTCGGCACATATA
1 -TGGAGCCCTTCCTTGAAATAACTGGCCTGATCTTGCTCAGATTTCACCAGATTCGGCACATATA
6354881 ATATCAACTCATTAAAACAAGTCTTGTACTCCTCTACAGTTAGATTTCCTTGTTTCAATTGTTTC
65 ATATCAACTCATTAAAACAAGTCTTGTACTCCTCTACAGTTAGATTTCCTTGTTTCAATTGTTTC
6354946 AAGCTCAGAAATTCTCTTTTCTTTTCTTTCTGATGAAAGTAAGTGAAATATTGACC
130 AAGCTCAGAAATTCTCTTTTCTTTTCTTTCTGATGAAAGTAAGTGAAATATTGACC
6355002 ATCAAATTTT
Statistics
Matches: 185, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
186 4 0.02
187 181 0.98
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.37
Consensus pattern (185 bp):
TGGAGCCCTTCCTTGAAATAACTGGCCTGATCTTGCTCAGATTTCACCAGATTCGGCACATATAA
TATCAACTCATTAAAACAAGTCTTGTACTCCTCTACAGTTAGATTTCCTTGTTTCAATTGTTTCA
AGCTCAGAAATTCTCTTTTCTTTTCTTTCTGATGAAAGTAAGTGAAATATTGACC
Found at i:6355723 original size:22 final size:22
Alignment explanation
Indices: 6355698--6355741 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
6355688 TTTAAAACCA
*
6355698 CTTTAAAACCAAAAGCTTTGAT
1 CTTTAAAACCAAAAGCTCTGAT
6355720 CTTTAAAACCAAAAGCTCTGAT
1 CTTTAAAACCAAAAGCTCTGAT
6355742 ACCAATCGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (22 bp):
CTTTAAAACCAAAAGCTCTGAT
Found at i:6363454 original size:22 final size:22
Alignment explanation
Indices: 6363422--6363465 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
6363412 TTACATTGGT
* *
6363422 ATCAGAGCTTTTGGTTTTAAAG
1 ATCAGAACTTTTGGGTTTAAAG
6363444 ATCAGAACTTTTGGGTTTAAAG
1 ATCAGAACTTTTGGGTTTAAAG
6363466 TTGGTTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.30, C:0.09, G:0.23, T:0.39
Consensus pattern (22 bp):
ATCAGAACTTTTGGGTTTAAAG
Found at i:6367308 original size:19 final size:18
Alignment explanation
Indices: 6367281--6367319 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
6367271 AAGATAAAAT
*
6367281 TTTTATAATAAAATATTA
1 TTTTATAATAAAATAATA
6367299 TTTTATTAATAAAATAATA
1 TTTTA-TAATAAAATAATA
6367318 TT
1 TT
6367320 AAAATATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TTTTATAATAAAATAATA
Found at i:6375265 original size:82 final size:82
Alignment explanation
Indices: 6375143--6375307 Score: 217
Period size: 82 Copynumber: 2.0 Consensus size: 82
6375133 TATATCCAGA
** * *
6375143 CGTTTAATAAATGTGTCACAACTTATATTCAGAGTCATGACCT-ATGCAAAGGTATCGATGGGAG
1 CGTTTAATAAATGTGTCACAACCCATATCCAGAGTCATGA-CTGACGCAAAGGTATCGATGGGAG
*
6375207 TTACCTTCTTTACCCATG
65 TTACCCTCTTTACCCATG
* * * *
6375225 CGTTTAATAAATGTGTCACGACCCA-AGTCCAGAGTCATGACTGACGTAAGGGTGTCGATGGGAG
1 CGTTTAATAAATGTGTCACAACCCATA-TCCAGAGTCATGACTGACGCAAAGGTATCGATGGGAG
6375289 TTACCCTCTTTACCCATG
65 TTACCCTCTTTACCCATG
6375307 C
1 C
6375308 AAGCTTAATG
Statistics
Matches: 72, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
81 3 0.04
82 69 0.96
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (82 bp):
CGTTTAATAAATGTGTCACAACCCATATCCAGAGTCATGACTGACGCAAAGGTATCGATGGGAGT
TACCCTCTTTACCCATG
Found at i:6376852 original size:18 final size:18
Alignment explanation
Indices: 6376821--6376858 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
6376811 GTACTCTATT
*
6376821 TTTCAAAATCATTATTAA
1 TTTCAAAATCATTATAAA
6376839 TTTCAAAA-CAATTATAAA
1 TTTCAAAATC-ATTATAAA
6376857 TT
1 TT
6376859 AATTTCATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 1 0.06
18 17 0.94
ACGTcount: A:0.47, C:0.11, G:0.00, T:0.42
Consensus pattern (18 bp):
TTTCAAAATCATTATAAA
Found at i:6379661 original size:15 final size:15
Alignment explanation
Indices: 6379641--6379672 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
6379631 GTTTGGTATG
*
6379641 TTGTTGGGAATGTGA
1 TTGTTGGGAATGCGA
6379656 TTGTTGGGAATGCGA
1 TTGTTGGGAATGCGA
6379671 TT
1 TT
6379673 ACTGGGAAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.03, G:0.38, T:0.41
Consensus pattern (15 bp):
TTGTTGGGAATGCGA
Found at i:6380052 original size:20 final size:20
Alignment explanation
Indices: 6380027--6380079 Score: 106
Period size: 20 Copynumber: 2.6 Consensus size: 20
6380017 TAAAGAAAAA
6380027 TCTATCAATAGATCACATTG
1 TCTATCAATAGATCACATTG
6380047 TCTATCAATAGATCACATTG
1 TCTATCAATAGATCACATTG
6380067 TCTATCAATAGAT
1 TCTATCAATAGAT
6380080 TATACAATCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.36
Consensus pattern (20 bp):
TCTATCAATAGATCACATTG
Found at i:6381230 original size:27 final size:28
Alignment explanation
Indices: 6381199--6381254 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
6381189 AGTAGACTAT
* *
6381199 ATATAC-TTGTCTATAGTTTTCATCAAA
1 ATATACTTTGTCTATAGTTTACAGCAAA
*
6381226 ATATACTTTGTTTATAGTTTACAGCAAA
1 ATATACTTTGTCTATAGTTTACAGCAAA
6381254 A
1 A
6381255 AGGTAATAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
27 6 0.24
28 19 0.76
ACGTcount: A:0.36, C:0.12, G:0.09, T:0.43
Consensus pattern (28 bp):
ATATACTTTGTCTATAGTTTACAGCAAA
Found at i:6383016 original size:39 final size:39
Alignment explanation
Indices: 6382973--6383074 Score: 143
Period size: 39 Copynumber: 2.6 Consensus size: 39
6382963 TCAACTCAGC
*
6382973 TCATGTGCACTCCCACACCGCACATGGCATATGTCATCA
1 TCATGTGCACTCCCACACCGCACATGGCATATATCATCA
*
6383012 TCATGTGCTA-TTCCACACCGCACATGGCATATATCATCA
1 TCATGTGC-ACTCCCACACCGCACATGGCATATATCATCA
* * *
6383051 GCGTGTGCTCTCCCACACCGCACA
1 TCATGTGCACTCCCACACCGCACA
6383075 CTATCGGCAC
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
39 54 0.98
40 1 0.02
ACGTcount: A:0.25, C:0.36, G:0.16, T:0.24
Consensus pattern (39 bp):
TCATGTGCACTCCCACACCGCACATGGCATATATCATCA
Found at i:6383532 original size:31 final size:33
Alignment explanation
Indices: 6383497--6383587 Score: 114
Period size: 36 Copynumber: 2.7 Consensus size: 33
6383487 AGCATGCCAC
*
6383497 CATGTGCTCTCCCACACTGCACA-TGGCAT-AT
1 CATGTGCTCTCCCACACCGCACACTGGCATCAT
*
6383528 CATGTGCTCTCCCACACCGCACACTACTGGCGTCAT
1 CATGTGCTCTCCCACACCG--CAC-ACTGGCATCAT
*
6383564 CATGTGCACTCCCACACCGCACAC
1 CATGTGCTCTCCCACACCGCACAC
6383588 GCACTGTTAT
Statistics
Matches: 52, Mismatches: 3, Indels: 8
0.83 0.05 0.13
Matches are distributed among these distances:
31 18 0.35
33 5 0.10
34 4 0.08
35 5 0.10
36 20 0.38
ACGTcount: A:0.22, C:0.42, G:0.15, T:0.21
Consensus pattern (33 bp):
CATGTGCTCTCCCACACCGCACACTGGCATCAT
Found at i:6384299 original size:15 final size:15
Alignment explanation
Indices: 6384281--6384324 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
6384271 TTATTAGATT
6384281 TTTAAATATTAATAA
1 TTTAAATATTAATAA
6384296 TTTAAA-ATT--TAA
1 TTTAAATATTAATAA
*
6384308 TTAAAATATTAATAA
1 TTTAAATATTAATAA
6384323 TT
1 TT
6384325 AATAATTGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
12 8 0.32
13 3 0.12
14 3 0.12
15 11 0.44
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
TTTAAATATTAATAA
Found at i:6384469 original size:22 final size:21
Alignment explanation
Indices: 6384383--6384475 Score: 75
Period size: 22 Copynumber: 4.4 Consensus size: 21
6384373 AATTTTTATT
*
6384383 TTATTTTTTAAAATATTAATAA
1 TTATATTTTAAAATATTAAT-A
*
6384405 TTGATAATTT-AAATATTAATA
1 TT-ATATTTTAAAATATTAATA
* * *
6384426 TTTTA-TTTATAAT-TTAGTTA
1 TTATATTTTAAAATATTA-ATA
6384446 TTCATATTTTAAAATATTAATA
1 TT-ATATTTTAAAATATTAATA
*
6384468 TTTTATTT
1 TTATATTT
6384476 AATTTAAATA
Statistics
Matches: 56, Mismatches: 9, Indels: 13
0.72 0.12 0.17
Matches are distributed among these distances:
19 6 0.11
20 9 0.16
21 10 0.18
22 23 0.41
23 8 0.14
ACGTcount: A:0.40, C:0.01, G:0.02, T:0.57
Consensus pattern (21 bp):
TTATATTTTAAAATATTAATA
Found at i:6384470 original size:82 final size:78
Alignment explanation
Indices: 6384286--6384589 Score: 210
Period size: 82 Copynumber: 3.8 Consensus size: 78
6384276 AGATTTTTAA
* * * * *
6384286 ATATTAATAATTTAAAATTTAATTAAAATATTAATAATTAATAATTGAAATACTAATATTTTA-T
1 ATATTAA-AATTTAATATTT-TTTAAAATATTAATAATTGATAATTTAAATATTAATATTTTATT
*
6384350 TTAATTTAAATATTATT
64 TTAATTT-ATTATTA-T
** *
6384367 ATGATTAATTTTTATTTTATTTTTTAAAATATTAATAATTGATAATTTAAATATTAATATTTTAT
1 AT-ATTAAAATTTA--ATATTTTTTAAAATATTAATAATTGATAATTTAAATATTAATATTTTAT
6384432 TTATAATTTAGTTATTCAT
63 TT-TAATTTA-TTATT-AT
* * * **
6384451 ATTTTAAAATATTAATATTTTATT-TAAT-TTAA-ATATT-ATTATGATT-AAT-TTTTTATTTT
1 ATATTAAAAT-TTAATATTTT-TTAAAATATTAATA-ATTGATAAT--TTAAATATTAATATTTT
* * *
6384510 ATTTTATTTTATTTTTAA
61 ATTTTAATTTATTATTAT
* * *
6384528 ATATTAATAATTGGTAA-ATTATTTAAAATATTAATAATTGATTATTTAATTATTAATATTTT
1 ATATTAA-AATT--TAATATTTTTTAAAATATTAATAATTGATAATTTAAATATTAATATTTT
6384590 TATATAATTT
Statistics
Matches: 176, Mismatches: 26, Indels: 43
0.72 0.11 0.18
Matches are distributed among these distances:
77 10 0.06
78 16 0.09
79 18 0.10
80 31 0.18
81 16 0.09
82 54 0.31
83 14 0.08
84 16 0.09
85 1 0.01
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (78 bp):
ATATTAAAATTTAATATTTTTTAAAATATTAATAATTGATAATTTAAATATTAATATTTTATTTT
AATTTATTATTAT
Found at i:6384518 original size:64 final size:64
Alignment explanation
Indices: 6384333--6384520 Score: 212
Period size: 64 Copynumber: 3.0 Consensus size: 64
6384323 TTAATAATTG
*
6384333 AAATACTAATATTTTATTTAATTTAAATATTATTATGATTAA-TTTTTATTTTA--TT-TTTTA
1 AAATATTAATATTTTATTTAATTTAAATATTATTATGATTAATTTTTTATTTTATTTTATTTTA
* * * * * * *
6384393 AAATATTAATAATTGA--TAATTTAAATATTAATAT-TTTATTTATAATTTA-GTTATTCATATT
1 AAATATTAATATTTTATTTAATTTAAATATTATTATGATTAATT-T--TTTATTTTATT-TTATT
6384454 TTA
62 TTA
6384457 AAATATTAATATTTTATTTAATTTAAATATTATTATGATTAATTTTTTATTTTATTTTATTTTA
1 AAATATTAATATTTTATTTAATTTAAATATTATTATGATTAATTTTTTATTTTATTTTATTTTA
6384521 TTTTTAAATA
Statistics
Matches: 101, Mismatches: 15, Indels: 20
0.74 0.11 0.15
Matches are distributed among these distances:
57 3 0.03
58 18 0.18
59 1 0.01
60 16 0.16
61 4 0.04
63 1 0.01
64 30 0.30
65 5 0.05
66 18 0.18
67 5 0.05
ACGTcount: A:0.38, C:0.01, G:0.02, T:0.59
Consensus pattern (64 bp):
AAATATTAATATTTTATTTAATTTAAATATTATTATGATTAATTTTTTATTTTATTTTATTTTA
Found at i:6384693 original size:27 final size:26
Alignment explanation
Indices: 6384668--6384725 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
6384658 TAATTTATTT
6384668 TATTAATAATTGATAATTTAAATATTAA
1 TATT-ATAATTGATAATTT-AATATTAA
* *
6384696 TATTTTAATTTATAATTTAATATTAA
1 TATTATAATTGATAATTTAATATTAA
6384722 TATT
1 TATT
6384726 TTATTAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 12 0.43
27 12 0.43
28 4 0.14
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (26 bp):
TATTATAATTGATAATTTAATATTAA
Found at i:6384706 original size:20 final size:20
Alignment explanation
Indices: 6384681--6384719 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
6384671 TAATAATTGA
6384681 TAATTTA-AATATTAATATTT
1 TAATTTATAAT-TTAATATTT
6384701 TAATTTATAATTTAATATT
1 TAATTTATAATTTAATATT
6384720 AATATTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 15 0.83
21 3 0.17
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
TAATTTATAATTTAATATTT
Found at i:6384714 original size:12 final size:12
Alignment explanation
Indices: 6384651--6384716 Score: 55
Period size: 12 Copynumber: 5.3 Consensus size: 12
6384641 TAAAAAGGAA
6384651 TAATTTATAATT
1 TAATTTATAATT
*
6384663 TATTTTATTAA--
1 TAATTTA-TAATT
*
6384674 TAATTGATAATT
1 TAATTTATAATT
*
6384686 TAAATATTAATATTT
1 T-AAT-TT-ATAATT
6384701 TAATTTATAATT
1 TAATTTATAATT
6384713 TAAT
1 TAAT
6384717 ATTAATATTT
Statistics
Matches: 42, Mismatches: 6, Indels: 12
0.70 0.10 0.20
Matches are distributed among these distances:
10 3 0.07
11 5 0.12
12 16 0.38
13 8 0.19
14 4 0.10
15 6 0.14
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (12 bp):
TAATTTATAATT
Found at i:6384725 original size:116 final size:117
Alignment explanation
Indices: 6384457--6384725 Score: 300
Period size: 116 Copynumber: 2.3 Consensus size: 117
6384447 TCATATTTTA
* * *
6384457 AAATATTAATATTTTA-TT-TAATTTAAATATTATTATGATTAATTTTTTATTTTATTTTATTTT
1 AAATATTAATATTTTATTTATAATTTAAATAATATTATGATTAATTTTATATTTTAATTTATTTT
* ** * *
6384520 ATTTTTAAATATTAATAATTGGTAAATTATTTAAAATATTAATAATTGATTATTT
66 ATTTTTAAAAAGGAATAATTGATAAATTATTT---ATATTAATAATTGATAATTT
* * * *
6384575 AATTATTAATATTTT-TATATAATTTAAATGATATTATGCTT-A-TTTAT-TTTTAATTTATTTT
1 AAATATTAATATTTTATTTATAATTTAAATAATATTATGATTAATTTTATATTTTAATTTATTTT
* * *
6384636 GTTTTTAAAAAGGAATAATTTATAATTTATTT-TATTAATAATTGATAATTT
66 ATTTTTAAAAAGGAATAATTGATAAATTATTTATATTAATAATTGATAATTT
6384687 AAATATTAATATTTTAATTTATAATTTAATATTAATATT
1 AAATATTAATATTTT-ATTTATAATTTAA-A-TAATATT
6384726 TTATTAAAAA
Statistics
Matches: 127, Mismatches: 18, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
112 32 0.25
114 11 0.09
115 1 0.01
116 44 0.35
117 4 0.03
118 16 0.13
119 19 0.15
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (117 bp):
AAATATTAATATTTTATTTATAATTTAAATAATATTATGATTAATTTTATATTTTAATTTATTTT
ATTTTTAAAAAGGAATAATTGATAAATTATTTATATTAATAATTGATAATTT
Found at i:6384743 original size:26 final size:26
Alignment explanation
Indices: 6384685--6384740 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
6384675 AATTGATAAT
* *
6384685 TTAAATATTAATATTTTAATTTATAA
1 TTAAATATTAATATTTTAATTAAAAA
*
6384711 TTTAATATTAATATTTT-ATTAAAAA
1 TTAAATATTAATATTTTAATTAAAAA
6384736 TTAAA
1 TTAAA
6384741 ATAAAATGAG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
25 10 0.38
26 16 0.62
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (26 bp):
TTAAATATTAATATTTTAATTAAAAA
Found at i:6384978 original size:19 final size:19
Alignment explanation
Indices: 6384918--6384978 Score: 52
Period size: 19 Copynumber: 3.1 Consensus size: 19
6384908 AATTTATTTT
*
6384918 ATTAATAATTGATAATTTAAA
1 ATTAAT-ATTGAT-ATTTTAA
* *
6384939 TATTAATATT-TTACTTGTAA
1 -ATTAATATTGATA-TTTTAA
6384959 ATTAATATTGATATTTTAA
1 ATTAATATTGATATTTTAA
6384978 A
1 A
6384979 ATATTAATAT
Statistics
Matches: 32, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
19 16 0.50
20 7 0.22
21 3 0.09
22 6 0.19
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (19 bp):
ATTAATATTGATATTTTAA
Found at i:6384983 original size:16 final size:16
Alignment explanation
Indices: 6384962--6384992 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6384952 CTTGTAAATT
*
6384962 AATATTGATATTTTAA
1 AATATTAATATTTTAA
6384978 AATATTAATATTTTA
1 AATATTAATATTTTA
6384993 TTAAAAGTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (16 bp):
AATATTAATATTTTAA
Found at i:6384988 original size:22 final size:21
Alignment explanation
Indices: 6384917--6384989 Score: 71
Period size: 22 Copynumber: 3.5 Consensus size: 21
6384907 TAATTTATTT
*
6384917 TATTAATAATTGATAATTTAAA
1 TATTAAT-ATTGATATTTTAAA
* *
6384939 TATTAATATT-TTACTTGT-AA
1 TATTAATATTGATA-TTTTAAA
6384959 -ATTAATATTGATATTTTAAAA
1 TATTAATATTGATATTTT-AAA
6384980 TATTAATATT
1 TATTAATATT
6384990 TTATTAAAAG
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
19 12 0.29
20 6 0.15
21 7 0.17
22 16 0.39
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (21 bp):
TATTAATATTGATATTTTAAA
Found at i:6384996 original size:19 final size:19
Alignment explanation
Indices: 6384936--6384998 Score: 56
Period size: 19 Copynumber: 3.2 Consensus size: 19
6384926 TTGATAATTT
*
6384936 AAATATTAATATTTTACTTG
1 AAATATTAATATTTTA-TTA
* *
6384956 TAA-ATTAATATTGATATTTTA
1 AAATATTAATATT--T-TATTA
6384977 AAATATTAATATTTTATTA
1 AAATATTAATATTTTATTA
6384996 AAA
1 AAA
6384999 GTTGGAATCA
Statistics
Matches: 34, Mismatches: 5, Indels: 9
0.71 0.10 0.19
Matches are distributed among these distances:
19 16 0.47
20 3 0.09
21 5 0.15
22 10 0.29
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (19 bp):
AAATATTAATATTTTATTA
Found at i:6386151 original size:28 final size:27
Alignment explanation
Indices: 6386120--6386172 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
6386110 TTTGGAGTAA
*
6386120 AAGGGTAAAATGGTAATTTTGCCACCCC
1 AAGGGCAAAATGGTAATTTT-CCACCCC
*
6386148 AAGGGCAAAATTGTAATTTTCCACC
1 AAGGGCAAAATGGTAATTTTCCACC
6386173 ACCAGGACAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 5 0.22
28 18 0.78
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (27 bp):
AAGGGCAAAATGGTAATTTTCCACCCC
Found at i:6390671 original size:13 final size:13
Alignment explanation
Indices: 6390653--6390677 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6390643 AGAGAAATTG
6390653 TGATTTTATAAAA
1 TGATTTTATAAAA
6390666 TGATTTTATAAA
1 TGATTTTATAAA
6390678 TTTTCTGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:6392625 original size:19 final size:19
Alignment explanation
Indices: 6392601--6392638 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
6392591 CGAGCTTTTC
*
6392601 TCTTCCTTTTTTCTTTCTT
1 TCTTCCTTTCTTCTTTCTT
6392620 TCTTCCTTTCTTCTTTCTT
1 TCTTCCTTTCTTCTTTCTT
6392639 CCTTTCTCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (19 bp):
TCTTCCTTTCTTCTTTCTT
Found at i:6392633 original size:15 final size:15
Alignment explanation
Indices: 6392610--6392645 Score: 63
Period size: 15 Copynumber: 2.3 Consensus size: 15
6392600 CTCTTCCTTT
6392610 TTTCTTTCTTTCTTCC
1 TTTC-TTCTTTCTTCC
6392626 TTTCTTCTTTCTTCC
1 TTTCTTCTTTCTTCC
6392641 TTTCT
1 TTTCT
6392646 CTCTCCTGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 16 0.80
16 4 0.20
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (15 bp):
TTTCTTCTTTCTTCC
Found at i:6397264 original size:2 final size:2
Alignment explanation
Indices: 6397257--6397286 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
6397247 ATTTTGATGT
*
6397257 TG TG TG TG TG TG TG TT TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
6397287 CTTTTTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.47, T:0.53
Consensus pattern (2 bp):
TG
Found at i:6397763 original size:233 final size:233
Alignment explanation
Indices: 6397356--6397801 Score: 540
Period size: 233 Copynumber: 1.9 Consensus size: 233
6397346 AAAACCATTC
*
6397356 ATTTTGATGTTATGAGTTGCCTTGAACTTCATAATGCCTAATCTATGTTATGGAAAAACTGTCTA
1 ATTTTGATGTTATGAGTTGCCTTCAACTTCATAATGCCTAATCTATGTTATGGAAAAACTGTCTA
* * * * *
6397421 AAAGGTGACGCTTGAGTTTGATTTCTAAGAATTTTATTTTTTTCGATTTGGTCTAGTTTGGGTGC
66 AAAGGTGACGATTGAGTTTGATTTCTAAGAATTTTATTTTTTTCAATCTGCTATAGTTTGGGTGC
** * * * * *
6397486 TAGTGCGGAAGGATGTTTAGTTGTATAGGTTTGTCTGTGTGGTGTTTTTTGACACTTGCTATGTG
131 TAGTGCAAAAGGATGTTTAGTTGCATAGGTTTGTCTATGTGGTGTTTTTTGACACCTGCCATGTA
*
6397551 GGTTTTTATAAGAATGATCGCTTGATCTGGTCTTTGTT
196 GGTTTTTACAAGAATGATCGCTTGATCTGGTCTTTGTT
* * * * * * *
6397589 ATTTTGATGTTGTGTGTTGCCTTCAACTTCATAATGCCTTATCTTTTTTGTGGAAAGAAC-GTTT
1 ATTTTGATGTTATGAGTTGCCTTCAACTTCATAATGCCTAATCTATGTTATGGAAA-AACTGTCT
** ** *
6397653 GGAAGGTG-CTGATTGAGTTT-ATTT-TTGGTAATTTTATTCTTTTTCAATCTGCTATGGTTTGG
65 AAAAGGTGAC-GATTGAGTTTGATTTCTAAG-AATTTTATT-TTTTTCAATCTGCTATAGTTTGG
* * * * *
6397715 GTGTTGGTGCAAAATGATGTTTGGTTGCATAGGTTTGTGTATGTGGTGTTTTTTGACACCTGCCA
127 GTGCTAGTGCAAAAGGATGTTTAGTTGCATAGGTTTGTCTATGTGGTGTTTTTTGACACCTGCCA
*
6397780 TGTAGGTTTTTACAAGAGTGAT
192 TGTAGGTTTTTACAAGAATGAT
6397802 AGTTTTTGGT
Statistics
Matches: 177, Mismatches: 32, Indels: 8
0.82 0.15 0.04
Matches are distributed among these distances:
231 2 0.01
232 14 0.08
233 158 0.89
234 3 0.02
ACGTcount: A:0.20, C:0.10, G:0.25, T:0.45
Consensus pattern (233 bp):
ATTTTGATGTTATGAGTTGCCTTCAACTTCATAATGCCTAATCTATGTTATGGAAAAACTGTCTA
AAAGGTGACGATTGAGTTTGATTTCTAAGAATTTTATTTTTTTCAATCTGCTATAGTTTGGGTGC
TAGTGCAAAAGGATGTTTAGTTGCATAGGTTTGTCTATGTGGTGTTTTTTGACACCTGCCATGTA
GGTTTTTACAAGAATGATCGCTTGATCTGGTCTTTGTT
Found at i:6399076 original size:28 final size:29
Alignment explanation
Indices: 6399035--6399094 Score: 68
Period size: 30 Copynumber: 2.1 Consensus size: 29
6399025 GTCTATGGGC
* *
6399035 AATTTTTCAGTTTT-TGGGGCAAAAATGT
1 AATTTTTCACTTTTAGGGGGCAAAAATGT
* *
6399063 AATTTTTGACTTTTACGGGGGCAAAAGTGT
1 AATTTTTCACTTTTA-GGGGGCAAAAATGT
6399093 AA
1 AA
6399095 ATTTCAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 12 0.46
30 14 0.54
ACGTcount: A:0.30, C:0.08, G:0.23, T:0.38
Consensus pattern (29 bp):
AATTTTTCACTTTTAGGGGGCAAAAATGT
Found at i:6406041 original size:20 final size:20
Alignment explanation
Indices: 6406002--6406041 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
6405992 CTACTTCCTT
*
6406002 ATGATTCATTATGTGCAGCA
1 ATGATTCATTATGTGAAGCA
6406022 ATGATTCATTAAT-TGAAGCA
1 ATGATTCATT-ATGTGAAGCA
6406042 TACAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 16 0.89
21 2 0.11
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.35
Consensus pattern (20 bp):
ATGATTCATTATGTGAAGCA
Found at i:6417662 original size:36 final size:35
Alignment explanation
Indices: 6417575--6417682 Score: 144
Period size: 35 Copynumber: 3.1 Consensus size: 35
6417565 TTAATTGTTT
* *
6417575 AATTTAATCAATTAGGCCCAATAACTTAATTAAAC
1 AATTTAATCAATTAAGCCCAATAATTTAATTAAAC
* *
6417610 AATTTAATTAATTAAGCCCAACAATTTAATTAAAC
1 AATTTAATCAATTAAGCCCAATAATTTAATTAAAC
* * *
6417645 AATTTTAATCAACTAAGCCTAATGATTTAATTAAAC
1 AA-TTTAATCAATTAAGCCCAATAATTTAATTAAAC
6417681 AA
1 AA
6417683 ATTCTGTAAA
Statistics
Matches: 63, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
35 33 0.52
36 30 0.48
ACGTcount: A:0.47, C:0.15, G:0.05, T:0.33
Consensus pattern (35 bp):
AATTTAATCAATTAAGCCCAATAATTTAATTAAAC
Found at i:6420710 original size:34 final size:34
Alignment explanation
Indices: 6420638--6420746 Score: 128
Period size: 34 Copynumber: 3.1 Consensus size: 34
6420628 GGTCGTGACA
* * * ***
6420638 AATTCAATCAATTAGGCCCAATAACTTAATTGTTT
1 AATTTAATTAATTAGGCCCAAT-GCTTAATTAAAT
6420673 AATTTAATTAATTAGGCCCAATGCTTAATTAAAT
1 AATTTAATTAATTAGGCCCAATGCTTAATTAAAT
* *
6420707 AATTTAATTAATTAGGCCCAATGATTCAATTAAAC
1 AATTTAATTAATTAGGCCCAATGCTT-AATTAAAT
6420742 AATTT
1 AATTT
6420747 TAATCAAGTG
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
34 33 0.51
35 32 0.49
ACGTcount: A:0.40, C:0.14, G:0.08, T:0.38
Consensus pattern (34 bp):
AATTTAATTAATTAGGCCCAATGCTTAATTAAAT
Found at i:6423139 original size:25 final size:24
Alignment explanation
Indices: 6423111--6423160 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 24
6423101 ATGGACTTTT
6423111 CCCATTTCTT-TTTAATTAGGCCATG
1 CCCA-TTCTTCTTT-ATTAGGCCATG
6423136 CCCATTCTTCCTTTATTAGGCCATG
1 CCCATTCTT-CTTTATTAGGCCATG
6423161 TCCAATTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 5 0.22
25 15 0.65
26 3 0.13
ACGTcount: A:0.18, C:0.28, G:0.12, T:0.42
Consensus pattern (24 bp):
CCCATTCTTCTTTATTAGGCCATG
Found at i:6423197 original size:26 final size:26
Alignment explanation
Indices: 6423126--6423206 Score: 94
Period size: 26 Copynumber: 3.1 Consensus size: 26
6423116 TTCTTTTTAA
* *
6423126 TTAGGCCATGCCCATTCTTC-CT-TTA
1 TTAGGCCATGCCCATT-TTCTATCTTG
*
6423151 TTAGGCCATGTCCAATTTTCTATCTTG
1 TTAGGCCATG-CCCATTTTCTATCTTG
*
6423178 TTGGGCCATGCCCATTTTCTATCTTG
1 TTAGGCCATGCCCATTTTCTATCTTG
6423204 TTA
1 TTA
6423207 TTTTCTTTTC
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
25 13 0.28
26 23 0.49
27 11 0.23
ACGTcount: A:0.16, C:0.26, G:0.15, T:0.43
Consensus pattern (26 bp):
TTAGGCCATGCCCATTTTCTATCTTG
Found at i:6423221 original size:5 final size:5
Alignment explanation
Indices: 6423207--6423252 Score: 69
Period size: 5 Copynumber: 9.6 Consensus size: 5
6423197 TATCTTGTTA
*
6423207 TTTTC TTTTC CTTTC TTTTC TTTTC TTTTC TTTTC -TTTC -TTTC TTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTT
6423253 CTCTCCCACC
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
4 8 0.21
5 30 0.79
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTC
Found at i:6433114 original size:179 final size:181
Alignment explanation
Indices: 6432872--6433239 Score: 496
Period size: 179 Copynumber: 2.0 Consensus size: 181
6432862 TTAATAGCCT
* * * *
6432872 AAATCAGCTTGTTTGGCCATGAAAATTTCCAGAACTAATCTTCATTGAACATTTTATTAAAGATA
1 AAATCAGCATGTTTGACCATGAAAATTTCCAGAAATAATCTTCATTGAACATTTTAATAAAGATA
* * *
6432937 AGTTTT-CTGGAATTTTTCAGAATTGATTTTCAAGAGTTTCTTGCCAATTAAAAATGAAATTCAT
66 A-TTTTCCTGGAATTTTTCAGAATTAATTTCCAAGACTTTCTTGCCAATTAAAAATGAAATTCAT
*
6433001 GCCAAAACAGTGAGCTGGACAGATTT-A-TATTTGCACCAATTTTCTT-CTTG
130 GCCAAAACAGTGAGCTGGACAGATTTCACTATTTGCACCAA-TTTCTTGCTTA
*
6433051 AAATCAGCATGTTTGACCAT-AATATTTTCCAGAAATAATCCTT-ATTGAACATTTTAATAAAGA
1 AAATCAGCATGTTTGACCATGAA-AATTTCCAGAAATAAT-CTTCATTGAACATTTTAATAAAGA
** *
6433114 TAATTTTCCTGGAATTTTTCAGAATTAATTTCCAAGACTTTCTTGTTAATTAAAACTGAAATTCA
64 TAATTTTCCTGGAATTTTTCAGAATTAATTTCCAAGACTTTCTTGCCAATTAAAAATGAAATTCA
* * * * * *
6433179 TGTCATAACAGTGAGCTGGACTGCTTTCACTTTTTGCTCCAATTTCTTGCTTA
129 TGCCAAAACAGTGAGCTGGACAGATTTCACTATTTGCACCAATTTCTTGCTTA
6433232 AAATCAGC
1 AAATCAGC
6433240 CTATTCAATC
Statistics
Matches: 165, Mismatches: 18, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
178 6 0.04
179 128 0.78
180 10 0.06
181 21 0.13
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.38
Consensus pattern (181 bp):
AAATCAGCATGTTTGACCATGAAAATTTCCAGAAATAATCTTCATTGAACATTTTAATAAAGATA
ATTTTCCTGGAATTTTTCAGAATTAATTTCCAAGACTTTCTTGCCAATTAAAAATGAAATTCATG
CCAAAACAGTGAGCTGGACAGATTTCACTATTTGCACCAATTTCTTGCTTA
Found at i:6434360 original size:35 final size:35
Alignment explanation
Indices: 6434313--6434554 Score: 195
Period size: 35 Copynumber: 6.9 Consensus size: 35
6434303 TCCTTAAGAC
***
6434313 GCCCAATCAACTTAATTGTTTAATTTAATCAATTAG
1 GCCCAAT-AACTTAATTAAATAATTTAATCAATTAG
* *
6434349 GCCCAATAACTTAATTAAATAATTTAATTAATTAA
1 GCCCAATAACTTAATTAAATAATTTAATCAATTAG
* * * *
6434384 GCCCAACAATTTAATTAAACAATTTTAATCAACTAG
1 GCCCAATAACTTAATTAAATAA-TTTAATCAATTAG
* * * *
6434420 GCCTAATGACTTAATTAAACAAATTCAATCAATTAG
1 GCCCAATAACTTAATTAAA-TAATTTAATCAATTAG
* *** *
6434456 GCCCAATAACGTAATTGTTTAATTTAATTAATTAG
1 GCCCAATAACTTAATTAAATAATTTAATCAATTAG
* * * *
6434491 GCCCAATGA-TTCAATTAAACAATTTAGTTAATTAG
1 GCCCAATAACTT-AATTAAATAATTTAATCAATTAG
* *
6434526 G--C-ACAACTTAATTAAACAATTTTAATCAA
1 GCCCAATAACTTAATTAAATAA-TTTAATCAA
6434555 GTGCTTGAGA
Statistics
Matches: 163, Mismatches: 38, Indels: 13
0.76 0.18 0.06
Matches are distributed among these distances:
32 12 0.07
33 10 0.06
34 1 0.01
35 82 0.50
36 56 0.34
37 2 0.01
ACGTcount: A:0.43, C:0.15, G:0.07, T:0.35
Consensus pattern (35 bp):
GCCCAATAACTTAATTAAATAATTTAATCAATTAG
Found at i:6434421 original size:71 final size:71
Alignment explanation
Indices: 6434336--6434554 Score: 223
Period size: 71 Copynumber: 3.1 Consensus size: 71
6434326 AATTGTTTAA
* * *
6434336 TTTAATCAATTAGGCCCAATAACTTAATTAAATAATTTAATTAATTAAGCCCAACAATTTAATTA
1 TTTAATCAATTAGGCCCAATGACTTAATTAAAAAATTTAATTAATTAAGCCCAACAACTTAATTA
6434401 AACAAT
66 AACAAT
* * * * * * *
6434407 TTTAATCAACTAGGCCTAATGACTTAATTAAACAAATTCAATCAATTAGGCCCAATAACGTAATT
1 TTTAATCAATTAGGCCCAATGACTTAATTAAA-AAATTTAATTAATTAAGCCCAACAACTTAATT
****
6434472 GTTTAA-
65 AAACAAT
* * * *
6434478 TTTAATTAATTAGGCCCAATGA-TTCAATTAAACAATTTAGTTAATT-AG-GC-ACAACTTAATT
1 TTTAATCAATTAGGCCCAATGACTT-AATTAAAAAATTTAATTAATTAAGCCCAACAACTTAATT
6434539 AAACAAT
65 AAACAAT
6434546 TTTAATCAA
1 TTTAATCAA
6434555 GTGCTTGAGA
Statistics
Matches: 115, Mismatches: 30, Indels: 9
0.75 0.19 0.06
Matches are distributed among these distances:
67 11 0.10
68 9 0.08
69 1 0.01
70 12 0.10
71 55 0.48
72 27 0.23
ACGTcount: A:0.43, C:0.15, G:0.07, T:0.35
Consensus pattern (71 bp):
TTTAATCAATTAGGCCCAATGACTTAATTAAAAAATTTAATTAATTAAGCCCAACAACTTAATTA
AACAAT
Found at i:6438023 original size:2 final size:2
Alignment explanation
Indices: 6438018--6438045 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
6438008 AAAAAAAGAG
6438018 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6438046 NNNNNNNNNN
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6469820 original size:27 final size:27
Alignment explanation
Indices: 6469753--6469823 Score: 97
Period size: 27 Copynumber: 2.6 Consensus size: 27
6469743 GACTTCATTA
*
6469753 GTGGTGTAGGAGCCACTAACTCCACTG
1 GTGGTGTAGGAGCCATTAACTCCACTG
* ** *
6469780 ATGGTGTAAAAGCCATTGACTCCACTG
1 GTGGTGTAGGAGCCATTAACTCCACTG
6469807 GTGGTGTAGGAGCCATT
1 GTGGTGTAGGAGCCATT
6469824 TCCTTACTCA
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (27 bp):
GTGGTGTAGGAGCCATTAACTCCACTG
Found at i:6470059 original size:18 final size:18
Alignment explanation
Indices: 6470036--6470070 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
6470026 ATTCTCAACT
6470036 TTATAATGAAATTTTATG
1 TTATAATGAAATTTTATG
**
6470054 TTATAATTTAATTTTAT
1 TTATAATGAAATTTTAT
6470071 TTCAAAAGTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (18 bp):
TTATAATGAAATTTTATG
Found at i:6474744 original size:35 final size:35
Alignment explanation
Indices: 6474673--6474755 Score: 94
Period size: 35 Copynumber: 2.4 Consensus size: 35
6474663 GCTCTATTTA
* * * * *
6474673 TTCTAGTTGTTCTATGTGAAGTAACGCTTCATTTG
1 TTCTAATTGTTTTACGTGAAGTAACACTTCACTTG
* *
6474708 TTCTAATTGTTTTACGTGAAGTAATACTTTACTTG
1 TTCTAATTGTTTTACGTGAAGTAACACTTCACTTG
*
6474743 TTTTAATTGTTTT
1 TTCTAATTGTTTT
6474756 CTATACAATA
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
35 40 1.00
ACGTcount: A:0.22, C:0.11, G:0.16, T:0.52
Consensus pattern (35 bp):
TTCTAATTGTTTTACGTGAAGTAACACTTCACTTG
Found at i:6489594 original size:13 final size:15
Alignment explanation
Indices: 6489576--6489607 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
6489566 AATTATCTAT
6489576 TTTTTAT-AT-AATA
1 TTTTTATAATGAATA
6489589 TTTTTATAATGAATA
1 TTTTTATAATGAATA
6489604 TTTT
1 TTTT
6489608 CCTCGTTGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 7 0.41
14 2 0.12
15 8 0.47
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.62
Consensus pattern (15 bp):
TTTTTATAATGAATA
Found at i:6490048 original size:18 final size:18
Alignment explanation
Indices: 6490025--6490068 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
6490015 CAATTAATAA
6490025 ATATATATACATATATGT
1 ATATATATACATATATGT
**
6490043 ATATATATGTATATATGT
1 ATATATATACATATATGT
*
6490061 GTATATAT
1 ATATATAT
6490069 TGAATATTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.41, C:0.02, G:0.09, T:0.48
Consensus pattern (18 bp):
ATATATATACATATATGT
Found at i:6490051 original size:10 final size:10
Alignment explanation
Indices: 6490025--6490081 Score: 62
Period size: 10 Copynumber: 5.8 Consensus size: 10
6490015 CAATTAATAA
* *
6490025 ATATATATAC
1 ATATATGTAT
6490035 ATATATGTAT
1 ATATATGTAT
6490045 ATATATGTAT
1 ATATATGTAT
*
6490055 ATATGTGTAT
1 ATATATGTAT
*
6490065 ATAT-TGAAT
1 ATATATGTAT
*
6490074 ATTTATGT
1 ATATATGT
6490082 GTGTATCTTT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
9 7 0.17
10 33 0.82
ACGTcount: A:0.39, C:0.02, G:0.11, T:0.49
Consensus pattern (10 bp):
ATATATGTAT
Found at i:6491575 original size:19 final size:19
Alignment explanation
Indices: 6491526--6491584 Score: 68
Period size: 19 Copynumber: 3.2 Consensus size: 19
6491516 AGGTAGTAGT
*
6491526 TTTCATATTTTTTACATAA
1 TTTCATATTTTTTATATAA
* *
6491545 TTT-A-ACTATTTTATAAAA
1 TTTCATA-TTTTTTATATAA
6491563 TTTCATATTTTTTATATAA
1 TTTCATATTTTTTATATAA
6491582 TTT
1 TTT
6491585 TTCTATGTTG
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
17 1 0.03
18 13 0.41
19 17 0.53
20 1 0.03
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (19 bp):
TTTCATATTTTTTATATAA
Found at i:6508309 original size:26 final size:26
Alignment explanation
Indices: 6508280--6508342 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 26
6508270 TTAAATATTT
6508280 TTTTATTTTTATTATATTT-AATTAAA
1 TTTTATTTTTATTAT-TTTAAATTAAA
*
6508306 TTTTAATATTT-TTATTTTAAATTAAA
1 TTTT-ATTTTTATTATTTTAAATTAAA
*
6508332 -TATATTTTTAT
1 TTTTATTTTTAT
6508343 AATTAATTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
24 5 0.16
25 6 0.19
26 15 0.48
27 5 0.16
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (26 bp):
TTTTATTTTTATTATTTTAAATTAAA
Found at i:6509840 original size:18 final size:18
Alignment explanation
Indices: 6509816--6509868 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 18
6509806 ATAAAAACTC
6509816 ATTTAATTTTTTTAAA-T
1 ATTTAATTTTTTTAAAGT
6509833 AGTTTAATATTTTTTAAAGT
1 A-TTTAAT-TTTTTTAAAGT
*
6509853 ATTTTATTTATTTTAA
1 ATTTAATTT-TTTTAA
6509869 TATTTAAAGA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
17 1 0.03
18 8 0.26
19 20 0.65
20 2 0.06
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (18 bp):
ATTTAATTTTTTTAAAGT
Found at i:6513848 original size:19 final size:19
Alignment explanation
Indices: 6513826--6513866 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
6513816 ACAAGAGGAA
*
6513826 ATTTTTTAAACAAAATAAT
1 ATTTTATAAACAAAATAAT
* *
6513845 ATTTTATCAATAAAATAAT
1 ATTTTATAAACAAAATAAT
6513864 ATT
1 ATT
6513867 AAAATATTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (19 bp):
ATTTTATAAACAAAATAAT
Found at i:6514965 original size:34 final size:34
Alignment explanation
Indices: 6514901--6514995 Score: 102
Period size: 34 Copynumber: 2.8 Consensus size: 34
6514891 GAAAGAAAGG
* *
6514901 AGCAGCTGTGGCTACTTATTTTTGGAGGAAGAATAA
1 AGCAGCT-TAGCTACTGATTTTT-GAGGAAGAATAA
* ** *
6514937 AGTAGCTTAGCTGTTGATTTTTGAGGAAGAATAG
1 AGCAGCTTAGCTACTGATTTTTGAGGAAGAATAA
*
6514971 AGCAGCTTGGCTACTGA-TTTTGAGG
1 AGCAGCTTAGCTACTGATTTTTGAGG
6514996 TGGATATGAG
Statistics
Matches: 49, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
33 8 0.16
34 24 0.49
35 11 0.22
36 6 0.12
ACGTcount: A:0.27, C:0.11, G:0.29, T:0.33
Consensus pattern (34 bp):
AGCAGCTTAGCTACTGATTTTTGAGGAAGAATAA
Found at i:6518010 original size:8 final size:8
Alignment explanation
Indices: 6517999--6518031 Score: 57
Period size: 8 Copynumber: 4.0 Consensus size: 8
6517989 TAAATAAAAT
6517999 AATATTAA
1 AATATTAA
6518007 AATATTAA
1 AATATTAA
6518015 TAATATTAA
1 -AATATTAA
6518024 AATATTAA
1 AATATTAA
6518032 TAATTTATTC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 16 0.67
9 8 0.33
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (8 bp):
AATATTAA
Found at i:6518018 original size:17 final size:17
Alignment explanation
Indices: 6517996--6518035 Score: 80
Period size: 17 Copynumber: 2.4 Consensus size: 17
6517986 TTTTAAATAA
6517996 AATAATATTAAAATATT
1 AATAATATTAAAATATT
6518013 AATAATATTAAAATATT
1 AATAATATTAAAATATT
6518030 AATAAT
1 AATAAT
6518036 TTATTCAGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
AATAATATTAAAATATT
Found at i:6519156 original size:34 final size:34
Alignment explanation
Indices: 6519101--6519183 Score: 105
Period size: 34 Copynumber: 2.4 Consensus size: 34
6519091 CAGCTGTGGT
* *
6519101 TGCTTATTTTTGGATGAAGAATAGAGCAGCTTAGC
1 TGCTGATTTTT-GAGGAAGAATAGAGCAGCTTAGC
* * *
6519136 TGTTGATTTTTGAGGAAGAATAGAGCAGCTTGGT
1 TGCTGATTTTTGAGGAAGAATAGAGCAGCTTAGC
6519170 TGCTGA-TTTTGAGG
1 TGCTGATTTTTGAGG
6519184 TGGATATGAG
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
33 8 0.19
34 25 0.60
35 9 0.21
ACGTcount: A:0.25, C:0.08, G:0.30, T:0.36
Consensus pattern (34 bp):
TGCTGATTTTTGAGGAAGAATAGAGCAGCTTAGC
Found at i:6520471 original size:10 final size:9
Alignment explanation
Indices: 6520424--6520472 Score: 53
Period size: 10 Copynumber: 5.1 Consensus size: 9
6520414 CATATATTTT
6520424 TTTTCTTTTC
1 TTTTC-TTTC
*
6520434 TTTTCTTCC
1 TTTTCTTTC
*
6520443 TTTTCCGTTC
1 TTTT-CTTTC
6520453 TTTTCTTTC
1 TTTTCTTTC
6520462 TTTCTCTTTC
1 TTT-TCTTTC
6520472 T
1 T
6520473 CCTCTCTCGC
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
9 14 0.42
10 19 0.58
ACGTcount: A:0.00, C:0.27, G:0.02, T:0.71
Consensus pattern (9 bp):
TTTTCTTTC
Found at i:6520472 original size:19 final size:19
Alignment explanation
Indices: 6520425--6520472 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
6520415 ATATATTTTT
6520425 TTTCT-TTTCTTTTCTTCC
1 TTTCTCTTTCTTTTCTTCC
* *
6520443 TTT-TCCGTTCTTTTCTTTC
1 TTTCT-CTTTCTTTTCTTCC
6520462 TTTCTCTTTCT
1 TTTCTCTTTCT
6520473 CCTCTCTCGC
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
17 1 0.04
18 3 0.12
19 19 0.79
20 1 0.04
ACGTcount: A:0.00, C:0.27, G:0.02, T:0.71
Consensus pattern (19 bp):
TTTCTCTTTCTTTTCTTCC
Found at i:6520675 original size:34 final size:35
Alignment explanation
Indices: 6520637--6520728 Score: 114
Period size: 34 Copynumber: 2.6 Consensus size: 35
6520627 TATCCACCTC
6520637 AAAATCAGCAGCCAAGCTACTCTATTCATTCT-AA
1 AAAATCAGCAGCCAAGCTACTCTATTCATTCTCAA
* * * * *
6520671 AAAATCAGCAACTAAGCTGCTCTATTCTTTCTCTA
1 AAAATCAGCAGCCAAGCTACTCTATTCATTCTCAA
*
6520706 AAAATTAGCAGCCATAGCTACTC
1 AAAATCAGCAGCCA-AGCTACTC
6520729 CTTTCCTCCC
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
34 28 0.60
35 12 0.26
36 7 0.15
ACGTcount: A:0.36, C:0.26, G:0.10, T:0.28
Consensus pattern (35 bp):
AAAATCAGCAGCCAAGCTACTCTATTCATTCTCAA
Found at i:6521077 original size:13 final size:13
Alignment explanation
Indices: 6521059--6521083 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6521049 ACTATCTTTT
6521059 GTCTCCATAACCG
1 GTCTCCATAACCG
6521072 GTCTCCATAACC
1 GTCTCCATAACC
6521084 AGTTGGTAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.40, G:0.12, T:0.24
Consensus pattern (13 bp):
GTCTCCATAACCG
Found at i:6522744 original size:19 final size:19
Alignment explanation
Indices: 6522711--6522770 Score: 59
Period size: 19 Copynumber: 3.1 Consensus size: 19
6522701 TTTTTTTCTT
6522711 TTCTTTTCT-TCCTTTCCCG
1 TTCTTTTCTCT-CTTTCCCG
* *
6522730 TTCTTTTCTCTCTTTCTCT
1 TTCTTTTCTCTCTTTCCCG
*
6522749 TTCTCTTTCTCCTCTCTCCCG
1 TTCT-TTTCT-CTCTTTCCCG
6522770 T
1 T
6522771 CGGTCAACAG
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
19 19 0.58
20 6 0.18
21 8 0.24
ACGTcount: A:0.00, C:0.38, G:0.03, T:0.58
Consensus pattern (19 bp):
TTCTTTTCTCTCTTTCCCG
Found at i:6523185 original size:14 final size:14
Alignment explanation
Indices: 6523168--6523220 Score: 54
Period size: 14 Copynumber: 3.6 Consensus size: 14
6523158 CGACTTAACT
6523168 TTTCTTTTCATTTC
1 TTTCTTTTCATTTC
* *
6523182 TTTCTTATCTTTTC
1 TTTCTTTTCATTTC
6523196 TTTCATTTTTCA-TTC
1 TTTC--TTTTCATTTC
6523211 ATTTCTTTTC
1 -TTTCTTTTC
6523221 TTTTATATGG
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
14 21 0.66
15 3 0.09
16 8 0.25
ACGTcount: A:0.09, C:0.21, G:0.00, T:0.70
Consensus pattern (14 bp):
TTTCTTTTCATTTC
Found at i:6525206 original size:33 final size:34
Alignment explanation
Indices: 6525169--6525262 Score: 102
Period size: 34 Copynumber: 2.8 Consensus size: 34
6525159 ATAGCAGCCA
*
6525169 AAGCTGCTCATATCCA-CCTC-AAAATCAATAACT
1 AAGCTGCTC-TATCCATCCTCAAAAATCAACAACT
* **
6525202 AAGCTGCTCTATTCATCCTCAAAAATCTGCAACT
1 AAGCTGCTCTATCCATCCTCAAAAATCAACAACT
* *
6525236 AAGCTGCTCTATTCTTCCTCCAAAAAT
1 AAGCTGCTCTATCCATCCT-CAAAAAT
6525263 AAGTAGCCAC
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
32 5 0.09
33 13 0.25
34 28 0.53
35 7 0.13
ACGTcount: A:0.34, C:0.30, G:0.07, T:0.29
Consensus pattern (34 bp):
AAGCTGCTCTATCCATCCTCAAAAATCAACAACT
Found at i:6530350 original size:20 final size:20
Alignment explanation
Indices: 6530325--6530365 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
6530315 ATAAGCCTTG
*
6530325 TTGATTTTTATGAAATGAAA
1 TTGATTTATATGAAATGAAA
6530345 TTGATTTATATGAAATGAAA
1 TTGATTTATATGAAATGAAA
6530365 T
1 T
6530366 GAGATTTGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.44
Consensus pattern (20 bp):
TTGATTTATATGAAATGAAA
Found at i:6530381 original size:25 final size:25
Alignment explanation
Indices: 6530334--6530383 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
6530324 GTTGATTTTT
*
6530334 ATGAAATGAAATTGATTTATATGAA
1 ATGAAATGAAATTGATGTATATGAA
*
6530359 ATGAAATGAGATTTGATGT-TATGAA
1 ATGAAATGA-AATTGATGTATATGAA
6530384 TCATATTATG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.44, C:0.00, G:0.20, T:0.36
Consensus pattern (25 bp):
ATGAAATGAAATTGATGTATATGAA
Found at i:6533639 original size:2 final size:2
Alignment explanation
Indices: 6533632--6533678 Score: 71
Period size: 2 Copynumber: 24.0 Consensus size: 2
6533622 GTATATGGAC
6533632 AT AT AT AT -T AT AT AT AT AT AT AT A- AT GAT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT
6533673 AT AT AT
1 AT AT AT
6533679 CCATGGAGAT
Statistics
Matches: 42, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.05
2 38 0.90
3 2 0.05
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:6533720 original size:2 final size:2
Alignment explanation
Indices: 6533713--6533761 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
6533703 CTAAAGTGAN
6533713 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6533755 TA TA TA T
1 TA TA TA T
6533762 CCATGGAGAT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:6533767 original size:83 final size:81
Alignment explanation
Indices: 6533632--6533794 Score: 292
Period size: 83 Copynumber: 2.0 Consensus size: 81
6533622 GTATATGGAC
6533632 ATATATATTATATATATATATATAATGATATATATATATATATATATCCATGGAGATGATTATGT
1 ATATATATTATATATATATATATAATGATATATATATATATATATATCCATGGAGATGATTATGT
6533697 GATCAACTAAAGTGANT
66 GATCAACTAAAGTGA-T
6533714 ATATATATATATATATATATATATATAT-ATATATATATATATATATATCCATGGAGATGATTAT
1 ATATATAT-TATATATATATATATA-ATGATATATATATATATATATATCCATGGAGATGATTAT
6533778 GTGATCAACTAAAGTGA
64 GTGATCAACTAAAGTGA
6533795 AGAATTATTC
Statistics
Matches: 79, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
82 8 0.10
83 69 0.87
84 2 0.03
ACGTcount: A:0.44, C:0.05, G:0.10, T:0.40
Consensus pattern (81 bp):
ATATATATTATATATATATATATAATGATATATATATATATATATATCCATGGAGATGATTATGT
GATCAACTAAAGTGAT
Found at i:6534854 original size:18 final size:19
Alignment explanation
Indices: 6534829--6534871 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
6534819 AAGTGAGAAG
6534829 AATATTTTA-GAATAAAAT
1 AATATTTTATGAATAAAAT
*
6534847 ATTATTTTATGAATAAAAT
1 AATATTTTATGAATAAAAT
6534866 AATATT
1 AATATT
6534872 AAAATATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 8 0.36
19 14 0.64
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (19 bp):
AATATTTTATGAATAAAAT
Found at i:6535251 original size:16 final size:15
Alignment explanation
Indices: 6535230--6535281 Score: 61
Period size: 16 Copynumber: 3.3 Consensus size: 15
6535220 TTTGAGGAAG
6535230 TAAAATAAATAATTAA
1 TAAAATAAATAA-TAA
6535246 TAAAATAAATAATAA
1 TAAAATAAATAATAA
*
6535261 TAATAGTAAATGAAT-A
1 TAA-AATAAAT-AATAA
6535277 TAAAA
1 TAAAA
6535282 ATGTATATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
15 7 0.22
16 22 0.69
17 3 0.09
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (15 bp):
TAAAATAAATAATAA
Found at i:6535452 original size:15 final size:14
Alignment explanation
Indices: 6535432--6535484 Score: 65
Period size: 13 Copynumber: 3.9 Consensus size: 14
6535422 AGTGTCGGCT
6535432 AAAGAAAGAAGAAG
1 AAAGAAAGAAGAAG
6535446 CAAAGAAAGAAGAAG
1 -AAAGAAAGAAGAAG
*
6535461 -AAGAGAGAAGAA-
1 AAAGAAAGAAGAAG
*
6535473 AAAAAAAGAAGA
1 AAAGAAAGAAGA
6535485 GAAGAAAAGG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
13 20 0.59
15 14 0.41
ACGTcount: A:0.72, C:0.02, G:0.26, T:0.00
Consensus pattern (14 bp):
AAAGAAAGAAGAAG
Found at i:6535473 original size:20 final size:20
Alignment explanation
Indices: 6535448--6535486 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
6535438 AGAAGAAGCA
* *
6535448 AAGAAAGAAGAAGAAGAGAG
1 AAGAAAAAAAAAGAAGAGAG
6535468 AAGAAAAAAAAAGAAGAGA
1 AAGAAAAAAAAAGAAGAGA
6535487 AGAAAAGGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (20 bp):
AAGAAAAAAAAAGAAGAGAG
Found at i:6535492 original size:15 final size:15
Alignment explanation
Indices: 6535432--6535493 Score: 67
Period size: 15 Copynumber: 4.3 Consensus size: 15
6535422 AGTGTCGGCT
*
6535432 AAAGAAAGAAGAAGC
1 AAAGAAAGAAGAAGA
6535447 AAAGAAAGAAGAAGA
1 AAAGAAAGAAGAAGA
* *
6535462 AGAGAGAAGAA-AAAA
1 AAAGA-AAGAAGAAGA
6535477 AAAG-AAG-AGAAGA
1 AAAGAAAGAAGAAGA
6535490 AAAG
1 AAAG
6535494 GAGTGTGACG
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
12 1 0.03
13 10 0.25
15 24 0.60
16 5 0.12
ACGTcount: A:0.71, C:0.02, G:0.27, T:0.00
Consensus pattern (15 bp):
AAAGAAAGAAGAAGA
Found at i:6535646 original size:51 final size:49
Alignment explanation
Indices: 6535570--6535688 Score: 177
Period size: 51 Copynumber: 2.4 Consensus size: 49
6535560 AATTCAACCA
* *
6535570 AAGGCCAGCGGGAGGAGAGAAAGAAGAAAGGAAAGGAAAGGAGAGAGAAGG
1 AAGGCCAGCGGGAGGAGAGAAAGAAGAAAAGAAAAGAAA-G-GAGAGAAGG
6535621 AAGGCC-GACGGGAGGAGAGAAAGAAGAAAAGAAAAGAAAGGAGAGAAGG
1 AAGGCCAG-CGGGAGGAGAGAAAGAAGAAAAGAAAAGAAAGGAGAGAAGG
*
6535670 AAGGTCAGCGGGAGGAGAG
1 AAGGCCAGCGGGAGGAGAG
6535689 GAGAGAAGGA
Statistics
Matches: 63, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
49 25 0.40
50 3 0.05
51 35 0.56
ACGTcount: A:0.48, C:0.07, G:0.45, T:0.01
Consensus pattern (49 bp):
AAGGCCAGCGGGAGGAGAGAAAGAAGAAAAGAAAAGAAAGGAGAGAAGG
Found at i:6535663 original size:77 final size:76
Alignment explanation
Indices: 6535582--6535761 Score: 174
Period size: 77 Copynumber: 2.4 Consensus size: 76
6535572 GGCCAGCGGG
6535582 AGGAGAGAAAGAAGAAAGGAAAGGAAAGGAGAGAGAAGGAAGGCCGACGGGAGGAGAGAAA-GAA
1 AGGAGAGAAAGAAGAAAGGAAAGGAAA-G-GAGAGAAGGAAGGCCGACGGGAGGAGA-AAAGGAA
6535646 G-AAAAGAAAAGAA
63 GAAAAAGAAAAGAA
* ** ** * * *
6535659 AGGAGAGAAGGAAGGTCAGCGGGAGGAGAGGAGAGAAGGAAGGCTGGCGGGAGGAGAAAAGGAAG
1 AGGAGAGAAAGAA-GAAAG-GAAAGGAAAGGAGAGAAGGAAGGCCGACGGGAGGAGAAAAGGAAG
6535724 AAAAAAGAAAAGAA
64 -AAAAAGAAAAGAA
*
6535738 A--AGAAAAAGAA-AAA-GAAAGAGAAA
1 AGGAGAGAAAGAAGAAAGGAAAG-GAAA
6535762 AAAAGAAGAA
Statistics
Matches: 82, Mismatches: 15, Indels: 15
0.73 0.13 0.13
Matches are distributed among these distances:
73 3 0.04
74 3 0.04
75 1 0.01
76 3 0.04
77 49 0.60
78 4 0.05
79 19 0.23
ACGTcount: A:0.55, C:0.04, G:0.40, T:0.01
Consensus pattern (76 bp):
AGGAGAGAAAGAAGAAAGGAAAGGAAAGGAGAGAAGGAAGGCCGACGGGAGGAGAAAAGGAAGAA
AAAGAAAAGAA
Found at i:6535690 original size:28 final size:28
Alignment explanation
Indices: 6535659--6535715 Score: 89
Period size: 28 Copynumber: 2.0 Consensus size: 28
6535649 AAGAAAAGAA
6535659 AGGAGAGAAGGAAGG-TCAGCGGGAGGAG
1 AGGAGAGAAGGAAGGCT-AGCGGGAGGAG
*
6535687 AGGAGAGAAGGAAGGCTGGCGGGAGGAG
1 AGGAGAGAAGGAAGGCTAGCGGGAGGAG
6535715 A
1 A
6535716 AAAGGAAGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 26 0.96
29 1 0.04
ACGTcount: A:0.35, C:0.07, G:0.54, T:0.04
Consensus pattern (28 bp):
AGGAGAGAAGGAAGGCTAGCGGGAGGAG
Found at i:6535734 original size:16 final size:16
Alignment explanation
Indices: 6535725--6535775 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
6535715 AAAAGGAAGA
6535725 AAAAAGAAAAGAAAAG
1 AAAAAGAAAAGAAAAG
6535741 AAAAAGAAAA-AGAAAG
1 AAAAAGAAAAGA-AAAG
*
6535757 AGAAA-AAAAGAAGAAG
1 AAAAAGAAAAGAA-AAG
6535773 AAA
1 AAA
6535776 GAGTGGGCAT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
15 6 0.20
16 24 0.80
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (16 bp):
AAAAAGAAAAGAAAAG
Found at i:6535743 original size:17 final size:17
Alignment explanation
Indices: 6535721--6535775 Score: 67
Period size: 20 Copynumber: 3.1 Consensus size: 17
6535711 GGAGAAAAGG
6535721 AAGAAAAAAGAAAAGAA
1 AAGAAAAAAGAAAAGAA
6535738 AAG-AAAAAGAAAAAGAA
1 AAGAAAAAAG-AAAAGAA
6535755 AGAGAAAAAAAGAAGAAGAA
1 A-AG-AAAAAAGAA-AAGAA
6535775 A
1 A
6535776 GAGTGGGCAT
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
16 6 0.18
17 11 0.33
18 2 0.06
19 2 0.06
20 12 0.36
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (17 bp):
AAGAAAAAAGAAAAGAA
Found at i:6535745 original size:6 final size:6
Alignment explanation
Indices: 6535725--6535777 Score: 58
Period size: 6 Copynumber: 9.2 Consensus size: 6
6535715 AAAAGGAAGA
* *
6535725 AAAAAG -AAAAG -AAAAG AAAAAG AAAAAG AAAGAG AAAAA- AAGAAG
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG
6535770 AAGAAAG A
1 AA-AAAG A
6535778 GTGGGCATGG
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
5 14 0.35
6 22 0.55
7 4 0.10
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:6535756 original size:26 final size:25
Alignment explanation
Indices: 6535713--6535775 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 25
6535703 TGGCGGGAGG
*
6535713 AGAAAAGGAAGAAAAAAGA-AAAGAAA
1 AGAAAAAGAA-AAAAAAGAGAAA-AAA
6535739 AGAAAAAGAAAAAGAAAGAGAAAAAA
1 AGAAAAAGAAAAA-AAAGAGAAAAAA
*
6535765 AGAAGAAGAAA
1 AGAAAAAGAAA
6535776 GAGTGGGCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
25 3 0.09
26 27 0.82
27 3 0.09
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (25 bp):
AGAAAAAGAAAAAAAAGAGAAAAAA
Found at i:6535834 original size:26 final size:25
Alignment explanation
Indices: 6535773--6535825 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
6535763 AAAGAAGAAG
* * *
6535773 AAAGAGTGGGCATGGCCTAATAAGA
1 AAAGAATGGGAATGGCCCAATAAGA
*
6535798 AAAGAATGGGAATGGCCCAATAGGA
1 AAAGAATGGGAATGGCCCAATAAGA
6535823 AAA
1 AAA
6535826 AATTGGGGAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.45, C:0.11, G:0.30, T:0.13
Consensus pattern (25 bp):
AAAGAATGGGAATGGCCCAATAAGA
Found at i:6542812 original size:20 final size:19
Alignment explanation
Indices: 6542782--6542826 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
6542772 AAAAACGTGA
6542782 TTTTCCCTTTGAATTTTCTAC
1 TTTT-CCTTTGAATTTTCT-C
**
6542803 TTTTCCTTTGGTTTTTCTC
1 TTTTCCTTTGAATTTTCTC
6542822 TTTTC
1 TTTTC
6542827 TTCCTTTCCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 6 0.27
20 12 0.55
21 4 0.18
ACGTcount: A:0.07, C:0.22, G:0.07, T:0.64
Consensus pattern (19 bp):
TTTTCCTTTGAATTTTCTC
Found at i:6543141 original size:28 final size:30
Alignment explanation
Indices: 6543078--6543142 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
6543068 AGTAATTTTT
* * *
6543078 AAAATTTACACTTTTGCCCTTATAAAAGTG
1 AAAAATTACACTTTTGCCCTCATAAAACTG
*
6543108 AAAAATTACATTTTTGCCC-CA-AAAACTG
1 AAAAATTACACTTTTGCCCTCATAAAACTG
6543136 AAAAATT
1 AAAAATT
6543143 GCCCATAGAC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 13 0.42
29 1 0.03
30 17 0.55
ACGTcount: A:0.43, C:0.17, G:0.08, T:0.32
Consensus pattern (30 bp):
AAAAATTACACTTTTGCCCTCATAAAACTG
Found at i:6543678 original size:20 final size:20
Alignment explanation
Indices: 6543653--6543695 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
6543643 CGAGTTTTAC
*
6543653 AATTGATTTTTATGAAATGA
1 AATTGATTTATATGAAATGA
6543673 AATTGATTTATATGAAATGA
1 AATTGATTTATATGAAATGA
6543693 AAT
1 AAT
6543696 GAGATTTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.44, C:0.00, G:0.14, T:0.42
Consensus pattern (20 bp):
AATTGATTTATATGAAATGA
Found at i:6543706 original size:20 final size:19
Alignment explanation
Indices: 6543660--6543706 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
6543650 TACAATTGAT
*
6543660 TTTTATGAAATGAAATTGA
1 TTTTATGAAATGAAATAGA
6543679 TTTATATGAAATGAAATGAGA
1 TTT-TATGAAATGAAAT-AGA
6543700 TTTTATG
1 TTTTATG
6543707 CTATGAATCA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 3 0.12
20 17 0.68
21 5 0.20
ACGTcount: A:0.40, C:0.00, G:0.17, T:0.43
Consensus pattern (19 bp):
TTTTATGAAATGAAATAGA
Found at i:6563984 original size:42 final size:42
Alignment explanation
Indices: 6563936--6564026 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
6563926 GTGGACCCGG
*
6563936 CTATGTGCGAGTA-AGAGTGTACATAAGCCGATGATGACCCAA
1 CTATGTGCGAGTAGA-AGTGCACATAAGCCGATGATGACCCAA
* **
6563978 CTATGTGCGAGTAGAAGTGCGCATAAGCCGATGATGACCCGG
1 CTATGTGCGAGTAGAAGTGCACATAAGCCGATGATGACCCAA
6564020 CTATGTG
1 CTATGTG
6564027 TCAAGCCCAA
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
42 43 0.98
43 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.30, T:0.22
Consensus pattern (42 bp):
CTATGTGCGAGTAGAAGTGCACATAAGCCGATGATGACCCAA
Found at i:6566996 original size:2 final size:2
Alignment explanation
Indices: 6566989--6567023 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
6566979 NNNNNNNNNN
6566989 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6567024 CATGTATAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:6569544 original size:38 final size:38
Alignment explanation
Indices: 6569501--6569577 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
6569491 AATCTAAACA
*
6569501 ACAACTTATATATGCTAATTTATCAATGTCTAAAATAT
1 ACAACTTATATATGCTAATATATCAATGTCTAAAATAT
6569539 ACAACTTATATATGCTAATATATCAATGTCTAAAATAT
1 ACAACTTATATATGCTAATATATCAATGTCTAAAATAT
6569577 A
1 A
6569578 AATATGATTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.44, C:0.13, G:0.05, T:0.38
Consensus pattern (38 bp):
ACAACTTATATATGCTAATATATCAATGTCTAAAATAT
Found at i:6579390 original size:40 final size:40
Alignment explanation
Indices: 6579336--6579439 Score: 122
Period size: 38 Copynumber: 2.6 Consensus size: 40
6579326 ACCCAGCTCA
* * * *
6579336 TGTACGTCCTCCCACATTGTGCACATAACCGGCGCCATCG
1 TGTACATCCCCCCACATCGTGCACATAACCAGCGCCATCG
* * *
6579376 TGTGCATCCCCCCACATCGTGCAC--AATCAGTGCCATCG
1 TGTACATCCCCCCACATCGTGCACATAACCAGCGCCATCG
*
6579414 TGTACATCCCCCCACATCATGCACAT
1 TGTACATCCCCCCACATCGTGCACAT
6579440 GAGCACTATC
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
38 33 0.62
40 20 0.38
ACGTcount: A:0.22, C:0.39, G:0.16, T:0.22
Consensus pattern (40 bp):
TGTACATCCCCCCACATCGTGCACATAACCAGCGCCATCG
Done.