Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36364294
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2168405 characters in sequence are not A, C, G, or T
File 22 of 91
Found at i:7298940 original size:13 final size:14
Alignment explanation
Indices: 7298894--7298940 Score: 50
Period size: 13 Copynumber: 3.6 Consensus size: 14
7298884 AATATCAGAT
7298894 TATCA-TATCATCA
1 TATCATTATCATCA
7298907 TATCA-TATCAAT-A
1 TATCATTATC-ATCA
7298920 TATC-TTATCATCA
1 TATCATTATCATCA
7298933 T-TCATTAT
1 TATCATTAT
7298941 AATAGGTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
12 4 0.13
13 24 0.80
14 2 0.07
ACGTcount: A:0.36, C:0.19, G:0.00, T:0.45
Consensus pattern (14 bp):
TATCATTATCATCA
Found at i:7302691 original size:2 final size:2
Alignment explanation
Indices: 7302676--7302721 Score: 55
Period size: 2 Copynumber: 25.0 Consensus size: 2
7302666 NNNNNNNNNN
*
7302676 CT CT CT C- CT C- CT CT CT CT -T CC CT C- CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
7302714 CT CT CT CT
1 CT CT CT CT
7302722 ATAAATAAGA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
1 4 0.11
2 34 0.89
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (2 bp):
CT
Found at i:7304325 original size:41 final size:42
Alignment explanation
Indices: 7304241--7304327 Score: 151
Period size: 42 Copynumber: 2.1 Consensus size: 42
7304231 CCACTTGCAC
7304241 ACCACAAATTTTGTTCAAATTCATCAAAATTGGAAAATCCTA
1 ACCACAAATTTTGTTCAAATTCATCAAAATTGGAAAATCCTA
7304283 ACCACAAATTTTGTTCAAATTCATC-AAATTGGAAAAGT-CTA
1 ACCACAAATTTTGTTCAAATTCATCAAAATTGGAAAA-TCCTA
7304324 ACCA
1 ACCA
7304328 TTTCCTATTT
Statistics
Matches: 44, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
41 18 0.41
42 26 0.59
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.30
Consensus pattern (42 bp):
ACCACAAATTTTGTTCAAATTCATCAAAATTGGAAAATCCTA
Found at i:7305985 original size:8 final size:8
Alignment explanation
Indices: 7305972--7306000 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
7305962 TTGAATTAGC
7305972 AAAAAATA
1 AAAAAATA
7305980 AAAAAATA
1 AAAAAATA
7305988 AAAAAATA
1 AAAAAATA
7305996 AAAAA
1 AAAAA
7306001 GTACATGTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (8 bp):
AAAAAATA
Found at i:7314225 original size:487 final size:491
Alignment explanation
Indices: 7313457--7314553 Score: 1193
Period size: 487 Copynumber: 2.2 Consensus size: 491
7313447 TACTAATTTT
* * * * * *
7313457 CGTAATAAGTCAATTTAAACAAAGTAAAAACACTTTAAGTGAAAATTAGTAACTTATATTTATAT
1 CGTAA-AAGTCAATTTAAA-AAA-TAAACATACTTTAAGTGAAAATTAATCATTTACATTTATA-
* * * * * *
7313522 TTTTGAGCAAAAAAAATTTAACCATTTATAAATGTTAATTTATAATTTTAGAATAATAAAAATAA
62 TTTTGAGTAAAAAATATTTAACCATTTACAAATTTTAATTTACAA-TATAGAATAATAAAAATAA
* * *
7313587 AAACACTTGTAATGAAAATTAACCATTTAAAAATCTTGAATTAAATTTATAAGAATAAACATACA
126 AAACAATTATAATGAAAATTAACCATTTAAAAATCTTGAAGTAAATTTATAAGAATAAACATACA
* *** * *
7313652 AAATTATAAAGTTGAAATAAATATTATTAAAATATATATGTAAATGAGTGAGACTTACCGTAAAA
191 AAATCATAAAGTTGAAATAAATATTATTAAAATATATACAAAAATGAGCGAGACTCACCGTAAAA
* *
7313717 AGTAAATTTAAACAAAATAAACATACTTTAAGTGAAAATTAATCATTTAAATTTATATTCTCGAG
256 AGTAAATTTAAACAAAATAAACATAATTTAAGTGAAAATTAATCATTTAAATATATATTCTCGAG
* * * *
7313782 -AAA-A-AGATA-TT-T-GA-CCA-TTATAAATTAATAATAATAAGGATAAAAATAATTATAGTG
321 AAAATATAAATATTTATAAATCAATTTATAAATGAATAATAATAAGGATAAAAA-AATTATAGTG
* * * ** * *
7313839 AAAATTAGTCATTT-AAAATCTTGACGTAATATTATAAGAATAAATGTAAAAAATATTAAGTTGA
385 AAAATTAGCCATTTAAAAATCTTGACGTAAAATTATAAAAATAAACATAAAAAA-ATAAAGTTAA
* * * * *
7313903 AATAAGCATTGTTAAAATGTTGATGTAAATGAGTG-ACGCTTAC
449 AATAAACATTATTAAAATATTGACGTAAATGAGTGAAAG-TTAC
* * *
7313946 TGTGAAAAGTCAATTTAAAAAATTAAACATACTTTAAGTGAAAATCAATCATTTACCTTTATATA
1 CGT-AAAAGTCAATTTAAAAAA-TAAACATACTTTAAGTGAAAATTAATCATTTACATTTATAT-
* *
7314011 CTTGAGTAAAAAATATTTAACCATTTACAAATTTTACTTTACAA-ATA-AATAATAAAAAGGATA
63 TTTGAGTAAAAAATATTTAACCATTTACAAATTTTAATTTACAATATAGAATAAT-AAAA--ATA
* * * * * *
7314074 CAAACAATTATAGTG-AAATTAGCTATTTAAAAATCTTGACGTAAATTTATAAGACTAAACATTA
125 AAAACAATTATAATGAAAATTAACCATTTAAAAATCTTGAAGTAAATTTATAAGAATAAACA-TA
* * * *
7314138 -AAAATCATAAAGTTGAAATAAATGTTGTTAAAATAT-TGACAAAAATGAGCGAGAGTCATCGTA
189 CAAAATCATAAAGTTGAAATAAATATTATTAAAATATAT-ACAAAAATGAGCGAGACTCACCGTA
* * ** * * *
7314201 AAAAGTCAATTTAGACAAAATAAACATAATTTTTGTGAAAATTAATCATTTACATATATATTTTT
253 AAAAGTAAATTTAAACAAAATAAACATAATTTAAGTGAAAATTAATCATTTAAATATATATTCTC
*
7314266 GAGTTAAAAATATTTAAATATTTATAAATTTTAATTTATAAATGAATAATAATAAGGATAAAAAA
318 GAG---AAAATA--TAAATATTTATAAA--TCAATTTATAAATGAATAATAATAAGGATAAAAAA
7314331 ATTATAGTGAAAATTAGCCATTTAAAAATCTTGACGTAAAATTATAAAAATAAACATAAAAAAAT
376 ATTATAGTGAAAATTAGCCATTTAAAAATCTTGACGTAAAATTATAAAAATAAACATAAAAAAAT
*
7314396 AAAGTTAAAATAAATATTATTAAAATATTGACGTAAATGAGTGAAAGTTAC
441 AAAGTTAAAATAAACATTATTAAAATATTGACGTAAATGAGTGAAAGTTAC
* ** *
7314447 CGTAAAACGTCAATTTAGACAAAATAAACATAATTTTTGTGAAAATTAATCATTTGCATTTATAT
1 CGTAAAA-GTCAATTTA-A-AAAATAAACATACTTTAAGTGAAAATTAATCATTTACATTTATAT
* *
7314512 TTTCAAGCT-AAAAATATTT-ACAAATTTACAAATTTTAATTTA
63 TTT-GAG-TAAAAAATATTTAAC-CATTTACAAATTTTAATTTA
7314554 TGAGCTAGCA
Statistics
Matches: 503, Mismatches: 75, Indels: 47
0.80 0.12 0.08
Matches are distributed among these distances:
485 6 0.01
486 7 0.01
487 152 0.30
488 88 0.17
489 15 0.03
490 2 0.00
491 3 0.01
492 1 0.00
495 4 0.01
496 2 0.00
497 1 0.00
498 1 0.00
500 4 0.01
501 81 0.16
502 131 0.26
503 5 0.01
ACGTcount: A:0.49, C:0.07, G:0.09, T:0.34
Consensus pattern (491 bp):
CGTAAAAGTCAATTTAAAAAATAAACATACTTTAAGTGAAAATTAATCATTTACATTTATATTTT
GAGTAAAAAATATTTAACCATTTACAAATTTTAATTTACAATATAGAATAATAAAAATAAAAACA
ATTATAATGAAAATTAACCATTTAAAAATCTTGAAGTAAATTTATAAGAATAAACATACAAAATC
ATAAAGTTGAAATAAATATTATTAAAATATATACAAAAATGAGCGAGACTCACCGTAAAAAGTAA
ATTTAAACAAAATAAACATAATTTAAGTGAAAATTAATCATTTAAATATATATTCTCGAGAAAAT
ATAAATATTTATAAATCAATTTATAAATGAATAATAATAAGGATAAAAAAATTATAGTGAAAATT
AGCCATTTAAAAATCTTGACGTAAAATTATAAAAATAAACATAAAAAAATAAAGTTAAAATAAAC
ATTATTAAAATATTGACGTAAATGAGTGAAAGTTAC
Found at i:7314494 original size:250 final size:248
Alignment explanation
Indices: 7313799--7314554 Score: 946
Period size: 250 Copynumber: 3.0 Consensus size: 248
7313789 TATTTGACCA
* *
7313799 TTATAAATTAATAATAATAAGGATAAAAATAATTATAGTGAAAATTAGTCATTT-AAAATCTTGA
1 TTATAAATAAATAATAATAAGGATAAAAA-AATTATAGTGAAAATTAGCCATTTAAAAATCTTGA
* ** * ** * *
7313863 CGTAATATTATAAGAATAAATGTAAAAAATATTAAGTTGAAATAAGCATTGTTAAAATGTTGATG
65 CGTAAAATTATAAGAATAAACATAAAAAA-ATAAAGTTGAAATAAATATTGTTAAAATATTGACG
* * * **
7313928 TAAATGAGTG-ACGCTTACTGTGAAAAGTCAATTTA-A-AAAATTAAACATACTTTAAGTGAAAA
129 TAAATGAGTGAAAG-TTACCGT-AAAAGTCAATTTAGACAAAA-TAAACATAATTTTTGTGAAAA
* * ** * * *
7313990 TCAATCATTTACCTTTATATACTTGAGTAAAAAATATTTAACCATTTACAAATTTTACT
191 TTAATCATTTACATTTATATTTTTGAGTTAAAAATATTTAA-AATTTACAAATTTTAAT
* * * *
7314049 TTACAAATAAATAATAAAAAGGATACAAACAATTATAGTG-AAATTAGCTATTTAAAAATCTTGA
1 TTATAAATAAATAATAATAAGGATA-AAAAAATTATAGTGAAAATTAGCCATTTAAAAATCTTGA
* * * *
7314113 CGTAAATTTATAAGACTAAACATTAAAAATCATAAAGTTGAAATAAATGTTGTTAAAATATTGAC
65 CGTAAAATTATAAGAATAAACA-TAAAAA-AATAAAGTTGAAATAAATATTGTTAAAATATTGAC
** * * * *
7314178 AAAAATGAGCGAGAGTCATCGTAAAAAGTCAATTTAGACAAAATAAACATAATTTTTGTGAAAAT
128 GTAAATGAGTGAAAGTTACCGT-AAAAGTCAATTTAGACAAAATAAACATAATTTTTGTGAAAAT
* *
7314243 TAATCATTTACATATATATTTTTGAGTTAAAAATATTTAAATATTTATAAATTTTAAT
192 TAATCATTTACATTTATATTTTTGAGTTAAAAATATTTAAA-ATTTACAAATTTTAAT
*
7314301 TTATAAATGAATAATAATAAGGATAAAAAAATTATAGTGAAAATTAGCCATTTAAAAATCTTGAC
1 TTATAAATAAATAATAATAAGGATAAAAAAATTATAGTGAAAATTAGCCATTTAAAAATCTTGAC
* * *
7314366 GTAAAATTATAAAAATAAACATAAAAAAATAAAGTTAAAATAAATATTATTAAAATATTGACGTA
66 GTAAAATTATAAGAATAAACATAAAAAAATAAAGTTGAAATAAATATTGTTAAAATATTGACGTA
7314431 AATGAGTGAAAGTTACCGTAAAACGTCAATTTAGACAAAATAAACATAATTTTTGTGAAAATTAA
131 AATGAGTGAAAGTTACCGTAAAA-GTCAATTTAGACAAAATAAACATAATTTTTGTGAAAATTAA
* ** *
7314496 TCATTTGCATTTATATTTTCAAGCTAAAAATATTTACAAATTTACAAATTTTAAT
195 TCATTTACATTTATATTTTTGAGTTAAAAATATTTA-AAATTTACAAATTTTAAT
7314551 TTAT
1 TTAT
7314555 GAGCTAGCAC
Statistics
Matches: 432, Mismatches: 63, Indels: 22
0.84 0.12 0.04
Matches are distributed among these distances:
249 15 0.03
250 197 0.46
251 83 0.19
252 133 0.31
253 4 0.01
ACGTcount: A:0.49, C:0.07, G:0.10, T:0.34
Consensus pattern (248 bp):
TTATAAATAAATAATAATAAGGATAAAAAAATTATAGTGAAAATTAGCCATTTAAAAATCTTGAC
GTAAAATTATAAGAATAAACATAAAAAAATAAAGTTGAAATAAATATTGTTAAAATATTGACGTA
AATGAGTGAAAGTTACCGTAAAAGTCAATTTAGACAAAATAAACATAATTTTTGTGAAAATTAAT
CATTTACATTTATATTTTTGAGTTAAAAATATTTAAAATTTACAAATTTTAAT
Found at i:7317670 original size:43 final size:41
Alignment explanation
Indices: 7317622--7317739 Score: 130
Period size: 42 Copynumber: 2.8 Consensus size: 41
7317612 TCATCAGCTC
* *
7317622 ATGCGCAGTCCCTACTCGCACATGGCTGAGTCATCAC-CAGGTT
1 ATGCGCACTCCCTACTCGCACAT-GCTGAGTCATC-CTC-GCTT
** *
7317665 ATGCGCACTCCCTACTCGCACATAATCGGGTCATCCTCGCTT
1 ATGCGCACTCCCTACTCGCACATGCT-GAGTCATCCTCGCTT
*
7317707 ATGCGCACTCCCTACTCGCACATAGCCGAGTCA
1 ATGCGCACTCCCTACTCGCACAT-GCTGAGTCA
7317740 ATATAATTAT
Statistics
Matches: 63, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
42 33 0.52
43 30 0.48
ACGTcount: A:0.21, C:0.36, G:0.19, T:0.23
Consensus pattern (41 bp):
ATGCGCACTCCCTACTCGCACATGCTGAGTCATCCTCGCTT
Found at i:7322091 original size:40 final size:40
Alignment explanation
Indices: 7322047--7322160 Score: 169
Period size: 40 Copynumber: 2.9 Consensus size: 40
7322037 TCAACAATGT
*
7322047 CTTAGTCTAAATCACCACATTAGACATTCACTA-CTTAATA
1 CTTAGTCTAAATCACCACATTAGACATTCA-TATCATAATA
* *
7322087 CTTAGTCTAAATCACCATATTTGACATTCATATCATAATA
1 CTTAGTCTAAATCACCACATTAGACATTCATATCATAATA
*
7322127 TTTAGTCTAAATCACCACATTAGACATTCA-ATCA
1 CTTAGTCTAAATCACCACATTAGACATTCATATCA
7322161 AGCAAAATGG
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
39 6 0.09
40 61 0.91
ACGTcount: A:0.38, C:0.23, G:0.05, T:0.34
Consensus pattern (40 bp):
CTTAGTCTAAATCACCACATTAGACATTCATATCATAATA
Found at i:7323445 original size:20 final size:21
Alignment explanation
Indices: 7323404--7323453 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
7323394 ATGTCATTTG
7323404 TCGATAGATTAGGCCTATCTA
1 TCGATAGATTAGGCCTATCTA
* * *
7323425 TTGATAGATTTGGTC-ATCTA
1 TCGATAGATTAGGCCTATCTA
7323445 TCGATAGAT
1 TCGATAGAT
7323454 GTTTATCAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 13 0.52
21 12 0.48
ACGTcount: A:0.28, C:0.14, G:0.20, T:0.38
Consensus pattern (21 bp):
TCGATAGATTAGGCCTATCTA
Found at i:7323582 original size:21 final size:22
Alignment explanation
Indices: 7323543--7323583 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
7323533 GAATGCAGTC
* *
7323543 TTAATTCCAAAAATCAATCCTT
1 TTAATCCCAAAAATAAATCCTT
7323565 TTAATCCCAAAAA-AAATCC
1 TTAATCCCAAAAATAAATCC
7323584 AACTCCATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.29
Consensus pattern (22 bp):
TTAATCCCAAAAATAAATCCTT
Found at i:7323927 original size:21 final size:22
Alignment explanation
Indices: 7323901--7323947 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
7323891 GGAAAATTGC
*
7323901 TTAATAGAGGACC-TGGGCAAA
1 TTAATAGAAGACCTTGGGCAAA
*
7323922 TTAATAGAATACCTTGGGCAAA
1 TTAATAGAAGACCTTGGGCAAA
7323944 TTAA
1 TTAA
7323948 GAAGGAGGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 11 0.48
22 12 0.52
ACGTcount: A:0.40, C:0.13, G:0.21, T:0.26
Consensus pattern (22 bp):
TTAATAGAAGACCTTGGGCAAA
Found at i:7328437 original size:252 final size:249
Alignment explanation
Indices: 7327910--7328517 Score: 731
Period size: 250 Copynumber: 2.4 Consensus size: 249
7327900 ATTCCATAAC
* * * * * * *
7327910 ATTATAGTGAAAATTAGTAATTTTAAAATTTTGATGTAAATTTATAAGAATGAATGTAAAAAATT
1 ATTATAGTGAAAATTAGCAATTTAAAAATCTTAACGTAAATTAATAAGAATGAATGTAAAAAATC
* * * * * *
7327975 AGAAAGTTGAAATAAAGATTGTTAAAATATTTACATAAATAAGTGAGAGTTACTGCAAAAAGTCA
66 ATAAAGTTGAAAT-AAGATTGTTAAAATATTAACGTAAATGAGCGAGAGCTACTGCAAAAAGTCA
*
7328040 ATTTAAACAAAATAAAAATATGTTAAGTGAAAATTAATCAGCTACATTGATACTCTCGAGCAAAA
130 ATTTAAACAAAATAAAAATATGTTAAGTGAAAATTAACCAGCTACATTGATACTCTCGAGCAAAA
* * * * * *
7328105 AATATTTAATCATATATAAATTTTACTTTATAAATGAATAATAAGGATAAAAATA
195 AATAATTAACCATATACAAATATTAATTTATAAATGAATAATAAAGATAAAAATA
* * *
7328160 ATTATAGTGAAAATTAACAATTTAAAAATCTTAACGTAAACTAATAAGAATGAATATAAAAAAAA
1 ATTATAGTGAAAATTAGCAATTTAAAAATCTTAACGTAAATTAATAAGAATGAATGT--AAAAAA
* * *
7328225 TCATAAAGTTGAAATAAGCATTGTTAAAATATTAACGTAAATGAGCGCGAGCTA-TCGTAAAATG
64 TCATAAAGTTGAAATAAG-ATTGTTAAAATATTAACGTAAATGAGCGAGAGCTACT-GCAAAAAG
* ** * *
7328289 TCAATTTAAACAAAATAAACATAT-TTAAGTGAAAATTAACCATTTACATTTATATTCTCGAGCA
127 TCAATTTAAACAAAATAAAAATATGTTAAGTGAAAATTAACCAGCTACATTGATACTCTCGAGCA
*
7328353 AAAAA-AATTAACCATTTACAAATATTAATTTATAAATGAATAATAACAAAGATAAAAATA
192 AAAAATAATTAACCATATACAAATATTAATTTATAAATGAATAAT---AAAGATAAAAATA
* * * *
7328413 ATTATAGTGAAAATT-GCCATTTAAAAATCATAACATAAATTGATTAA-AATGAATGTAAAAAAT
1 ATTATAGTGAAAATTAGCAATTTAAAAATCTTAACGTAAATT-AATAAGAATGAATGTAAAAAAT
* * * *
7328476 CATAAAGTTGCATTAAGTATTGTTAAAATATTGACGTTAATG
65 CATAAAGTTGAAATAAG-ATTGTTAAAATATTAACGTAAATG
7328518 TGTGATAGTT
Statistics
Matches: 306, Mismatches: 44, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
250 125 0.41
251 44 0.14
252 106 0.35
253 31 0.10
ACGTcount: A:0.50, C:0.07, G:0.11, T:0.32
Consensus pattern (249 bp):
ATTATAGTGAAAATTAGCAATTTAAAAATCTTAACGTAAATTAATAAGAATGAATGTAAAAAATC
ATAAAGTTGAAATAAGATTGTTAAAATATTAACGTAAATGAGCGAGAGCTACTGCAAAAAGTCAA
TTTAAACAAAATAAAAATATGTTAAGTGAAAATTAACCAGCTACATTGATACTCTCGAGCAAAAA
ATAATTAACCATATACAAATATTAATTTATAAATGAATAATAAAGATAAAAATA
Found at i:7330518 original size:17 final size:17
Alignment explanation
Indices: 7330492--7330537 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 17
7330482 ATTTATAAAA
7330492 AATTCAATTTATTTTAT
1 AATTCAATTTATTTTAT
*
7330509 AATTCCATTTATTTTAT
1 AATTCAATTTATTTTAT
7330526 AAATTCATATTT
1 -AATTCA-ATTT
7330538 TTCTCATAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 16 0.64
18 5 0.20
19 4 0.16
ACGTcount: A:0.35, C:0.09, G:0.00, T:0.57
Consensus pattern (17 bp):
AATTCAATTTATTTTAT
Found at i:7339547 original size:22 final size:22
Alignment explanation
Indices: 7339505--7339548 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
7339495 GTGGAGAATT
* *
7339505 TCAAGAGAAAAAGTGTGAAAAA
1 TCAAGAAAAAAAGTGTAAAAAA
7339527 TCAAGAAAAATAAGTG-AAAAAA
1 TCAAGAAAAA-AAGTGTAAAAAA
7339549 GTAGGATTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.64, C:0.05, G:0.18, T:0.14
Consensus pattern (22 bp):
TCAAGAAAAAAAGTGTAAAAAA
Found at i:7342191 original size:67 final size:66
Alignment explanation
Indices: 7342097--7342254 Score: 219
Period size: 67 Copynumber: 2.4 Consensus size: 66
7342087 TATAATAGAT
* * *
7342097 TATATATAATTTTTATTATTGTAAATCATTGAAAATTATGGATATATAGTACATCAAATTTATCA
1 TATATATAA-TTTT-TTATTGTAAATCAATAAAAATTATGGATATATAATACATCAAATTTATCA
*
7342162 TTA
64 TGA
*
7342165 TATATATAATTTTGTTATTGTAAATCAATAAAAATTATGTATATATAATACATCAAATTTATCAT
1 TATATATAATTTT-TTATTGTAAATCAATAAAAATTATGGATATATAATACATCAAATTTATCAT
7342230 GA
65 GA
* *
7342232 AAT-TGTAATTTTTTATTGTAAAT
1 TATATATAATTTTTTATTGTAAAT
7342255 TTTAATTGAA
Statistics
Matches: 82, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
65 11 0.13
66 8 0.10
67 54 0.66
68 9 0.11
ACGTcount: A:0.42, C:0.05, G:0.07, T:0.46
Consensus pattern (66 bp):
TATATATAATTTTTTATTGTAAATCAATAAAAATTATGGATATATAATACATCAAATTTATCATG
A
Found at i:7345535 original size:37 final size:37
Alignment explanation
Indices: 7345463--7345538 Score: 107
Period size: 37 Copynumber: 2.1 Consensus size: 37
7345453 TAATATATTG
* * *
7345463 GAAAAATACCTTTAAATCCAAAAGTTACGAGACAATT
1 GAAAAATACCTCTAAATCCAAAAGTTACAAAACAATT
* *
7345500 GAAAAATACCTCTAAATCTAAAAGTTATAAAACAATT
1 GAAAAATACCTCTAAATCCAAAAGTTACAAAACAATT
7345537 GA
1 GA
7345539 CAAACATTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.51, C:0.14, G:0.09, T:0.25
Consensus pattern (37 bp):
GAAAAATACCTCTAAATCCAAAAGTTACAAAACAATT
Found at i:7354690 original size:19 final size:18
Alignment explanation
Indices: 7354648--7354691 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
7354638 TCAATTTTTC
*
7354648 TTATTATTTTTATTTATAT
1 TTATT-TTTTTATTTAGAT
*
7354667 TTATTTTTTTATTTCGAT
1 TTATTTTTTTATTTAGAT
7354685 TCTATTT
1 T-TATTT
7354692 ACTTATGTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.20, C:0.05, G:0.02, T:0.73
Consensus pattern (18 bp):
TTATTTTTTTATTTAGAT
Found at i:7356628 original size:21 final size:20
Alignment explanation
Indices: 7356604--7356647 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
7356594 TCTATAGTCA
*
7356604 ACTATGCCTCTCTTATAGTTG
1 ACTATGCCT-TCTTAAAGTTG
* *
7356625 ACTATGGCTTTTTAAAGTTG
1 ACTATGCCTTCTTAAAGTTG
7356645 ACT
1 ACT
7356648 TTTTTTTGCC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.23, C:0.18, G:0.16, T:0.43
Consensus pattern (20 bp):
ACTATGCCTTCTTAAAGTTG
Found at i:7358940 original size:55 final size:55
Alignment explanation
Indices: 7358879--7358991 Score: 226
Period size: 55 Copynumber: 2.1 Consensus size: 55
7358869 AAGGAATTAC
7358879 TAAGACATGAGTATTTCAATAAATATTCAATATATGCTTCAAATACTCATAATTT
1 TAAGACATGAGTATTTCAATAAATATTCAATATATGCTTCAAATACTCATAATTT
7358934 TAAGACATGAGTATTTCAATAAATATTCAATATATGCTTCAAATACTCATAATTT
1 TAAGACATGAGTATTTCAATAAATATTCAATATATGCTTCAAATACTCATAATTT
7358989 TAA
1 TAA
7358992 AAAATATCCA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 58 1.00
ACGTcount: A:0.42, C:0.12, G:0.07, T:0.38
Consensus pattern (55 bp):
TAAGACATGAGTATTTCAATAAATATTCAATATATGCTTCAAATACTCATAATTT
Found at i:7360745 original size:25 final size:25
Alignment explanation
Indices: 7360703--7360751 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
7360693 GTGAAGATAG
7360703 CCAAATTTTCCTTACAATAATGCAA
1 CCAAATTTTCCTTACAATAATGCAA
* * *
7360728 CCAAATTTTTCTTGCAATCATGCA
1 CCAAATTTTCCTTACAATAATGCA
7360752 TATGATTACT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.24, G:0.06, T:0.35
Consensus pattern (25 bp):
CCAAATTTTCCTTACAATAATGCAA
Found at i:7362010 original size:2 final size:2
Alignment explanation
Indices: 7362005--7362087 Score: 114
Period size: 2 Copynumber: 42.0 Consensus size: 2
7361995 ACACATACTA
* * * *
7362005 AT AT AT AT AT AT AT AT AT AT AT AT -T AT GT AT AT AT AA AC AC
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
7362046 NT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7362088 GTGACATACT
Statistics
Matches: 73, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
1 1 0.01
2 72 0.99
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.47
Consensus pattern (2 bp):
AT
Found at i:7370927 original size:5 final size:5
Alignment explanation
Indices: 7370884--7370923 Score: 62
Period size: 5 Copynumber: 8.0 Consensus size: 5
7370874 TGTGGCTCCT
* *
7370884 AGTTA AGTTA AGTTA AGTTA AGTTA AGTTA GGTTA GGTTA
1 AGTTA AGTTA AGTTA AGTTA AGTTA AGTTA AGTTA AGTTA
7370924 GGTTGAATAG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 34 1.00
ACGTcount: A:0.35, C:0.00, G:0.25, T:0.40
Consensus pattern (5 bp):
AGTTA
Found at i:7383478 original size:28 final size:29
Alignment explanation
Indices: 7383437--7383496 Score: 68
Period size: 30 Copynumber: 2.1 Consensus size: 29
7383427 GTCTATGGGC
*
7383437 AATTTTTCAATTTT-TGGGGCAAAAATGT
1 AATTTTTCAATTTTAGGGGGCAAAAATGT
* * *
7383465 AATTTTTGACTTTTACGGGGGCAAAAGTGT
1 AATTTTTCAATTTTA-GGGGGCAAAAATGT
7383495 AA
1 AA
7383497 ATTTCAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 12 0.46
30 14 0.54
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.38
Consensus pattern (29 bp):
AATTTTTCAATTTTAGGGGGCAAAAATGT
Found at i:7389008 original size:21 final size:20
Alignment explanation
Indices: 7388957--7389008 Score: 50
Period size: 21 Copynumber: 2.5 Consensus size: 20
7388947 CTACAACAAT
**
7388957 TTTATCAATACATTTTGGAA
1 TTTATCAATACATTAAGGAA
* **
7388977 TGTATTGATACATGTAAGGAA
1 TTTATCAATACAT-TAAGGAA
7388998 TTTATCAATAC
1 TTTATCAATAC
7389009 CCTTGGTAAT
Statistics
Matches: 23, Mismatches: 8, Indels: 1
0.72 0.25 0.03
Matches are distributed among these distances:
20 10 0.43
21 13 0.57
ACGTcount: A:0.37, C:0.10, G:0.13, T:0.40
Consensus pattern (20 bp):
TTTATCAATACATTAAGGAA
Found at i:7389770 original size:80 final size:81
Alignment explanation
Indices: 7389637--7389977 Score: 395
Period size: 80 Copynumber: 4.1 Consensus size: 81
7389627 ATAACATTTC
* * * * *
7389637 CATAAATCA-TTATTATACTTAGCCCATAGTGTACATGGTTATCTCAACACATACATCTCATGGC
1 CATAAATCACTTA-CATGCTTAGCCCATAGTGTAAATGATTATTTCAACACATACATCTCATGGC
7389701 ATACAT-TTCATAACCT
65 ATACATCTTCATAACCT
*
7389717 CATAAATCACTTACATGCTTAGCTCATAGTGTAAATGATTATTTCAACACATACATCTCATGGCA
1 CATAAATCACTTACATGCTTAGCCCATAGTGTAAATGATTATTTCAACACATACATCTCATGGCA
7389782 TACATCTCATGGCAAACATTTCATAACCT
66 TACATCT--T------CA--T-A-A-CCT
*
7389811 CATAAATCACTTACATGCTTAGCTCATAGTGTAAATGATTATTTCAACACATACATCTCATGGCA
1 CATAAATCACTTACATGCTTAGCCCATAGTGTAAATGATTATTTCAACACATACATCTCATGGCA
7389876 TACAT-TTCATAACCT
66 TACATCTTCATAACCT
* * *
7389891 CATAAATCACTTACATGCTTAGCCCATAGTGTACATGATATACTT-AATACATACATCTCATGGC
1 CATAAATCACTTACATGCTTAGCCCATAGTGTAAATGAT-TATTTCAACACATACATCTCATGGC
* * *
7389955 ATACATGTT-ACAATCT
65 ATACATCTTCATAACCT
7389971 CATAAAT
1 CATAAAT
7389978 GGAACTCATG
Statistics
Matches: 232, Mismatches: 12, Indels: 34
0.83 0.04 0.12
Matches are distributed among these distances:
80 136 0.59
81 11 0.05
82 1 0.00
83 2 0.01
85 2 0.01
89 2 0.01
91 2 0.01
92 1 0.00
93 2 0.01
94 73 0.31
ACGTcount: A:0.35, C:0.23, G:0.09, T:0.33
Consensus pattern (81 bp):
CATAAATCACTTACATGCTTAGCCCATAGTGTAAATGATTATTTCAACACATACATCTCATGGCA
TACATCTTCATAACCT
Found at i:7389785 original size:14 final size:14
Alignment explanation
Indices: 7389766--7389805 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
7389756 TATTTCAACA
7389766 CATACATCTCATGG
1 CATACATCTCATGG
7389780 CATACATCTCATGG
1 CATACATCTCATGG
* *
7389794 CAAACATTTCAT
1 CATACATCTCAT
7389806 AACCTCATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.33, C:0.28, G:0.10, T:0.30
Consensus pattern (14 bp):
CATACATCTCATGG
Found at i:7389838 original size:94 final size:93
Alignment explanation
Indices: 7389686--7389960 Score: 389
Period size: 94 Copynumber: 3.1 Consensus size: 93
7389676 TATCTCAACA
7389686 CATACATCTCATGGCATACATTTCATAACCTCATAAATCACTTACATGCTTAGCTCATAGTGTAA
1 CATACATCTCATGGCA-ACATTTCATAACCTCATAAATCACTTACATGCTTAGCTCATAGTGTAA
7389751 ATGATTATTTCAACACATACATCTCATGG
65 ATGATTATTTCAACACATACATCTCATGG
7389780 CATACATCTCATGGCAAACATTTCATAACCTCATAAATCACTTACATGCTTAGCTCATAGTGTAA
1 CATACATCTCATGGC-AACATTTCATAACCTCATAAATCACTTACATGCTTAGCTCATAGTGTAA
7389845 ATGATTATTTCAACACATACATCTCATGG
65 ATGATTATTTCAACACATACATCTCATGG
* *
7389874 ---------CAT----ACATTTCATAACCTCATAAATCACTTACATGCTTAGCCCATAGTGTACA
1 CATACATCTCATGGCAACATTTCATAACCTCATAAATCACTTACATGCTTAGCTCATAGTGTAAA
* *
7389926 TGATATACTT-AATACATACATCTCATGG
66 TGAT-TATTTCAACACATACATCTCATGG
7389954 CATACAT
1 CATACAT
7389961 GTTACAATCT
Statistics
Matches: 168, Mismatches: 4, Indels: 25
0.85 0.02 0.13
Matches are distributed among these distances:
80 68 0.40
81 4 0.02
85 3 0.02
94 92 0.55
95 1 0.01
ACGTcount: A:0.35, C:0.24, G:0.09, T:0.32
Consensus pattern (93 bp):
CATACATCTCATGGCAACATTTCATAACCTCATAAATCACTTACATGCTTAGCTCATAGTGTAAA
TGATTATTTCAACACATACATCTCATGG
Found at i:7389945 original size:174 final size:174
Alignment explanation
Indices: 7389637--7389960 Score: 526
Period size: 174 Copynumber: 1.9 Consensus size: 174
7389627 ATAACATTTC
* * *
7389637 CATAAATCATTATTATACTTAGCCCATAGTGTACATGGTTATCTCAACACATACATCTCATGGCA
1 CATAAATCATTATCATACTTAGCCCATAGTGTAAATGATTATCTCAACACATACATCTCATGGCA
* *
7389702 TACATTTCATAACCTCATAAATCACTTACATGCTTAGCTCATAGTGTAAATGATTATTTCAACAC
66 TACATTTCATAACCTCATAAATCACTTACATGCTTAGCCCATAGTGTAAATGATTACTTCAACAC
7389767 ATACATCTCATGGCATACATCTCATGGCAAACATTTCATAACCT
131 ATACATCTCATGGCATACATCTCATGGCAAACATTTCATAACCT
* * *
7389811 CATAAATCACTTA-CATGCTTAGCTCATAGTGTAAATGATTATTTCAACACATACATCTCATGGC
1 CATAAATCA-TTATCATACTTAGCCCATAGTGTAAATGATTATCTCAACACATACATCTCATGGC
* *
7389875 ATACATTTCATAACCTCATAAATCACTTACATGCTTAGCCCATAGTGTACATGATATACTT-AAT
65 ATACATTTCATAACCTCATAAATCACTTACATGCTTAGCCCATAGTGTAAATGAT-TACTTCAAC
7389939 ACATACATCTCATGGCATACAT
129 ACATACATCTCATGGCATACAT
7389961 GTTACAATCT
Statistics
Matches: 138, Mismatches: 10, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
174 131 0.95
175 7 0.05
ACGTcount: A:0.35, C:0.23, G:0.09, T:0.33
Consensus pattern (174 bp):
CATAAATCATTATCATACTTAGCCCATAGTGTAAATGATTATCTCAACACATACATCTCATGGCA
TACATTTCATAACCTCATAAATCACTTACATGCTTAGCCCATAGTGTAAATGATTACTTCAACAC
ATACATCTCATGGCATACATCTCATGGCAAACATTTCATAACCT
Found at i:7392287 original size:21 final size:21
Alignment explanation
Indices: 7392249--7392289 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
7392239 TAAGTAAGTT
*
7392249 CTTTAATTTTATGTTTATTTC
1 CTTTAATTTGATGTTTATTTC
7392270 CTTTAATTTGAT-TATTATTT
1 CTTTAATTTGATGT-TTATTT
7392290 ATTAGTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.22, C:0.07, G:0.05, T:0.66
Consensus pattern (21 bp):
CTTTAATTTGATGTTTATTTC
Found at i:7395067 original size:13 final size:13
Alignment explanation
Indices: 7395049--7395073 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7395039 TTCCAGAAAA
7395049 TTTATAAAATCAT
1 TTTATAAAATCAT
7395062 TTTATAAAATCA
1 TTTATAAAATCA
7395074 CAATTTCTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTATAAAATCAT
Found at i:7396472 original size:19 final size:19
Alignment explanation
Indices: 7396448--7396485 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
7396438 CTGCCAAACC
*
7396448 CTCAAATTATACTCCAATA
1 CTCAAATCATACTCCAATA
7396467 CTCAAATCATACTCCAATA
1 CTCAAATCATACTCCAATA
7396486 AGTTAAATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.29, G:0.00, T:0.29
Consensus pattern (19 bp):
CTCAAATCATACTCCAATA
Found at i:7397912 original size:16 final size:16
Alignment explanation
Indices: 7397891--7397921 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7397881 AATTTATTTA
*
7397891 AAATATTAATATTTTT
1 AAATATGAATATTTTT
7397907 AAATATGAATATTTT
1 AAATATGAATATTTT
7397922 ATTTATGATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (16 bp):
AAATATGAATATTTTT
Found at i:7399208 original size:36 final size:35
Alignment explanation
Indices: 7399161--7399441 Score: 183
Period size: 36 Copynumber: 7.5 Consensus size: 35
7399151 AAATTGTATA
7399161 CTATTATAAAGAGCACCTCCCAAGGATCAACAAATG
1 CTATTATAAAGAGCACC-CCCAAGGATCAACAAATG
*
7399197 CTATTATAAAGAGCACCCTCCAAGGAT-AATAAATTGTGTG
1 CTATTATAAAGAGCACCC-CCAAGGATCAACAAA-----TG
* * *
7399237 CTATTATAAAGAGTATCTCCCAAGGATCAACAAGTG
1 CTATTATAAAGAGCA-CCCCCAAGGATCAACAAATG
* * *
7399273 CTATTATAAAGAGCACCCTCCTAGAAT-AATAAATTGTGTG
1 CTATTATAAAGAGCACCC-CCAAGGATCAACAAA-----TG
* * *
7399313 CTATTTTGAAGAGCACCCCCCAAGGATCAACAAGTG
1 CTATTATAAAGAGCA-CCCCCAAGGATCAACAAATG
* * * *
7399349 CTATTATAAAG-GCACCTTTCGAA-GATAAAAAATTATATG
1 CTATTATAAAGAGCACC--CCCAAGGAT-CAACA--A-ATG
* *
7399388 CTATTTTAAAGAGCACCCCTCAAGGATCAATAAATG
1 CTATTATAAAGAGCACCCC-CAAGGATCAACAAATG
*
7399424 CTATTATAAAGAGTACCC
1 CTATTATAAAGAGCACCC
7399442 TTTGAGGATA
Statistics
Matches: 189, Mismatches: 31, Indels: 50
0.70 0.11 0.19
Matches are distributed among these distances:
34 2 0.01
35 18 0.10
36 83 0.44
37 1 0.01
38 2 0.01
39 17 0.09
40 53 0.28
41 13 0.07
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.26
Consensus pattern (35 bp):
CTATTATAAAGAGCACCCCCAAGGATCAACAAATG
Found at i:7399276 original size:76 final size:76
Alignment explanation
Indices: 7399150--7399480 Score: 414
Period size: 76 Copynumber: 4.4 Consensus size: 76
7399140 ATGGTGATTC
* * *
7399150 TAAATTGTATACTATTATAAAGAGCACCTCCCAAGGATCAACAAATGCTATTATAAAGAGCACCC
1 TAAATTGTGTGCTATTATAAAGAGCACCCCCCAAGGATCAACAAATGCTATTATAAAGAGCACCC
7399215 TCCAAGGATAA
66 TCCAAGGATAA
* * * *
7399226 TAAATTGTGTGCTATTATAAAGAGTATCTCCCAAGGATCAACAAGTGCTATTATAAAGAGCACCC
1 TAAATTGTGTGCTATTATAAAGAGCACCCCCCAAGGATCAACAAATGCTATTATAAAGAGCACCC
* *
7399291 TCCTAGAATAA
66 TCCAAGGATAA
* * *
7399302 TAAATTGTGTGCTATTTTGAAGAGCACCCCCCAAGGATCAACAAGTGCTATTATAAAG-GCACCT
1 TAAATTGTGTGCTATTATAAAGAGCACCCCCCAAGGATCAACAAATGCTATTATAAAGAGCACC-
* *
7399366 TTCGAA-GATAA
65 CTCCAAGGATAA
* * * * * * *
7399377 AAAATTATATGCTATTTTAAAGAGCACCCCTCAAGGATCAATAAATGCTATTATAAAGAGTACCC
1 TAAATTGTGTGCTATTATAAAGAGCACCCCCCAAGGATCAACAAATGCTATTATAAAGAGCACCC
***
7399442 TTTGAGGATAA
66 TCCAAGGATAA
*
7399453 CAAATTGTGTGCTATTATAAAGAGCACC
1 TAAATTGTGTGCTATTATAAAGAGCACC
7399481 ACTTTAAATT
Statistics
Matches: 220, Mismatches: 32, Indels: 6
0.85 0.12 0.02
Matches are distributed among these distances:
75 62 0.28
76 158 0.72
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.27
Consensus pattern (76 bp):
TAAATTGTGTGCTATTATAAAGAGCACCCCCCAAGGATCAACAAATGCTATTATAAAGAGCACCC
TCCAAGGATAA
Found at i:7399432 original size:151 final size:152
Alignment explanation
Indices: 7399150--7399480 Score: 427
Period size: 151 Copynumber: 2.2 Consensus size: 152
7399140 ATGGTGATTC
* * *
7399150 TAAATTGTATACTATTATAAAGAGCACCTCCCAAGGATCAACAAATGCTATTATAAAGAGCACCC
1 TAAATTGTGTGCTATTATAAAGAGCACCCCCCAAGGATCAACAAATGCTATTATAAAGAGCACCC
* * * * * *
7399215 TCCAAGGATAATAAATTGTGTGCTATTATAAAGAGTATCTCCCAAGGATCAACAAGTGCTATTAT
66 TCCAAGGATAAAAAATTATATGCTATTATAAAGAGCATCCCCCAAGGATCAACAAATGCTATTAT
7399280 AAAGAGCACCCTCCT-AGAATAA
131 AAAGAGCACCCT-CTGAGAATAA
* * *
7399302 TAAATTGTGTGCTATTTTGAAGAGCACCCCCCAAGGATCAACAAGTGCTATTATAAAG-GCACCT
1 TAAATTGTGTGCTATTATAAAGAGCACCCCCCAAGGATCAACAAATGCTATTATAAAGAGCACC-
* * * *
7399366 TTCGAA-GATAAAAAATTATATGCTATTTTAAAGAGCA-CCCCTCAAGGATCAATAAATGCTATT
65 CTCCAAGGATAAAAAATTATATGCTATTATAAAGAGCATCCCC-CAAGGATCAACAAATGCTATT
* * *
7399429 ATAAAGAGTACCCTTTGAGGATAA
129 ATAAAGAGCACCCTCTGAGAATAA
*
7399453 CAAATTGTGTGCTATTATAAAGAGCACC
1 TAAATTGTGTGCTATTATAAAGAGCACC
7399481 ACTTTAAATT
Statistics
Matches: 154, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
150 4 0.03
151 94 0.61
152 56 0.36
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.27
Consensus pattern (152 bp):
TAAATTGTGTGCTATTATAAAGAGCACCCCCCAAGGATCAACAAATGCTATTATAAAGAGCACCC
TCCAAGGATAAAAAATTATATGCTATTATAAAGAGCATCCCCCAAGGATCAACAAATGCTATTAT
AAAGAGCACCCTCTGAGAATAA
Found at i:7400327 original size:33 final size:29
Alignment explanation
Indices: 7400285--7400358 Score: 87
Period size: 28 Copynumber: 2.4 Consensus size: 29
7400275 ATACCAATTA
7400285 CAATATACTTCTTTCAAAATTATAGTCTTATTG
1 CAATATACTTCTTTC--AA--ATAGTCTTATTG
*
7400318 CAATATACTTC-TTCAAATAGTTTTATTG
1 CAATATACTTCTTTCAAATAGTCTTATTG
*
7400346 CAATATACGTCTT
1 CAATATACTTCTT
7400359 CCAAGATCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
28 21 0.55
29 1 0.03
30 2 0.05
32 3 0.08
33 11 0.29
ACGTcount: A:0.32, C:0.16, G:0.07, T:0.45
Consensus pattern (29 bp):
CAATATACTTCTTTCAAATAGTCTTATTG
Found at i:7400346 original size:28 final size:28
Alignment explanation
Indices: 7400306--7400359 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
7400296 TTTCAAAATT
*
7400306 ATAGTCTTATTGCAATATACTTCTTCAA
1 ATAGTCTTATTGCAATATACGTCTTCAA
*
7400334 ATAGTTTTATTGCAATATACGTCTTC
1 ATAGTCTTATTGCAATATACGTCTTC
7400360 CAAGATCATA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.30, C:0.17, G:0.09, T:0.44
Consensus pattern (28 bp):
ATAGTCTTATTGCAATATACGTCTTCAA
Found at i:7400857 original size:80 final size:80
Alignment explanation
Indices: 7400693--7400945 Score: 293
Period size: 80 Copynumber: 3.2 Consensus size: 80
7400683 ATCCCTTGAG
* * * * * *
7400693 ATAATTT-GAAGATAATATTTA-A-ATTGGATCAATTAAAAATTAGTTATTGGTCATCCAATTTG
1 ATAATTTAG-AGATAATATTTATATTTTTGACCAATCAAAATTTAGTTATTGGTCATCCAATTTA
*
7400755 TCTCTAAATAAATCAA
65 TCTCTAAATAATTCAA
7400771 AGTAATTTAGAGATAATATTTATATTTTTGACCAATCAAAATTTAGTTATTGGTCATCCAA-TTA
1 A-TAATTTAGAGATAATATTTATATTTTTGACCAATCAAAATTTAGTTATTGGTCATCCAATTTA
7400835 TCTCTAAATAATTCAA
65 TCTCTAAATAATTCAA
* * * * * **
7400851 GATAATTTAGAGATTATATTCATATTTTTTACCAATCAAAATTTAATCATTGGTCATTTAATTTA
1 -ATAATTTAGAGATAATATTTATATTTTTGACCAATCAAAATTTAGTTATTGGTCATCCAATTTA
7400916 TCTCT-AATAATT-ATA
65 TCTCTAAATAATTCA-A
*
7400931 TTAATTTAGAGATAA
1 ATAATTTAGAGATAA
7400946 AAATCAAATT
Statistics
Matches: 152, Mismatches: 16, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 32 0.21
80 79 0.52
81 40 0.26
ACGTcount: A:0.40, C:0.09, G:0.09, T:0.42
Consensus pattern (80 bp):
ATAATTTAGAGATAATATTTATATTTTTGACCAATCAAAATTTAGTTATTGGTCATCCAATTTAT
CTCTAAATAATTCAA
Found at i:7401245 original size:18 final size:18
Alignment explanation
Indices: 7401205--7401238 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7401195 GAAGCATTCA
*
7401205 AAGATTGGGAGGCATTTG
1 AAGATTGAGAGGCATTTG
7401223 AAGATTGAGA-GCATTT
1 AAGATTGAGAGGCATTT
7401239 TAGAGATCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.32, C:0.06, G:0.32, T:0.29
Consensus pattern (18 bp):
AAGATTGAGAGGCATTTG
Found at i:7401327 original size:29 final size:29
Alignment explanation
Indices: 7401271--7401334 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 29
7401261 TTCTGAAGTG
* ** * *
7401271 AAGATCAAGCGGTAGTGAAGTTCATGATT
1 AAGATCAAGCGGCAACGAAATTCATGATC
*
7401300 AAGATCAAGCGGCAACGAAATTCGTGATC
1 AAGATCAAGCGGCAACGAAATTCATGATC
7401329 AAGATC
1 AAGATC
7401335 TCAAATGTTC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.25, T:0.22
Consensus pattern (29 bp):
AAGATCAAGCGGCAACGAAATTCATGATC
Found at i:7401436 original size:52 final size:52
Alignment explanation
Indices: 7401329--7401487 Score: 223
Period size: 51 Copynumber: 3.1 Consensus size: 52
7401319 ATTCGTGATC
* * * *
7401329 AAGATCTCAAATGTTCGTGATCAAGAT-TAAGTTGTAAAGACCCTCGAAGCG
1 AAGATATCAAGTGTTCGTGATCAAGATCTAAGTCGTAAAGACCCTTGAAGCG
* * * *
7401380 AAGATATCAAGTGTTCGTAATCAAGATCTATGTCGTCAAGACCCTTGAAGCA
1 AAGATATCAAGTGTTCGTGATCAAGATCTAAGTCGTAAAGACCCTTGAAGCG
*
7401432 AAGATATCAAGTGTTCGTGATCAAGATC-AAGTCGTGAAGACCCTTGAAGCG
1 AAGATATCAAGTGTTCGTGATCAAGATCTAAGTCGTAAAGACCCTTGAAGCG
7401483 AAGAT
1 AAGAT
7401488 TAAGCAAAGT
Statistics
Matches: 95, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
51 49 0.52
52 46 0.48
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (52 bp):
AAGATATCAAGTGTTCGTGATCAAGATCTAAGTCGTAAAGACCCTTGAAGCG
Found at i:7405016 original size:7 final size:7
Alignment explanation
Indices: 7405004--7405028 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
7404994 CCATCAACAT
7405004 TAAAATA
1 TAAAATA
7405011 TAAAATA
1 TAAAATA
7405018 TAAAATA
1 TAAAATA
7405025 TAAA
1 TAAA
7405029 CACATAGGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (7 bp):
TAAAATA
Found at i:7406032 original size:16 final size:17
Alignment explanation
Indices: 7406005--7406036 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
7405995 TTCTTTCTAT
7406005 TTATATTATTTAACTAG
1 TTATATTATTTAACTAG
7406022 TTATA-TATTTAACTA
1 TTATATTATTTAACTA
7406037 TTGTGTGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.38, C:0.06, G:0.03, T:0.53
Consensus pattern (17 bp):
TTATATTATTTAACTAG
Found at i:7413384 original size:33 final size:34
Alignment explanation
Indices: 7413315--7413384 Score: 83
Period size: 33 Copynumber: 2.1 Consensus size: 34
7413305 ATCGGACAAA
*
7413315 ATTTTTTTAAATAATTATTATAAAATTTTTTATT
1 ATTTTTTTAAATAATTATTATAAAATTTTATATT
*
7413349 ATTTTATTTACAT-ATTA-TATAAAATTATTAT-TT
1 ATTTT-TTTAAATAATTATTATAAAATT-TTATATT
7413382 ATT
1 ATT
7413385 ATAAATCTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
33 14 0.44
34 12 0.38
35 6 0.19
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (34 bp):
ATTTTTTTAAATAATTATTATAAAATTTTATATT
Found at i:7413402 original size:25 final size:23
Alignment explanation
Indices: 7413371--7413435 Score: 67
Period size: 25 Copynumber: 2.7 Consensus size: 23
7413361 TATTATATAA
*
7413371 AATTATTATTTATTATAAATCTTTT
1 AATTATTATTTATT-TAAAT-ATTT
*
7413396 AATTATTAATTAATTTAAATATTT
1 AATTATT-ATTTATTTAAATATTT
* *
7413420 AAATATTATTTTTTTA
1 AATTATTATTTATTTA
7413436 TTTTAAATTT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
23 7 0.21
24 9 0.26
25 12 0.35
26 6 0.18
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (23 bp):
AATTATTATTTATTTAAATATTT
Found at i:7414194 original size:15 final size:18
Alignment explanation
Indices: 7414166--7414223 Score: 57
Period size: 17 Copynumber: 3.2 Consensus size: 18
7414156 AATCAAAATT
*
7414166 TTATTATTTTATTTTA-AA
1 TTATTATTAT-TTTTATAA
7414184 TT-TTATTATTTTTATAA
1 TTATTATTATTTTTATAA
*
7414201 TTATTATTAATTAATTATAA
1 TTATTATT-ATT-TTTATAA
7414221 TTA
1 TTA
7414224 ATTAAAATAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
16 5 0.15
17 10 0.29
18 7 0.21
19 3 0.09
20 9 0.26
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (18 bp):
TTATTATTATTTTTATAA
Found at i:7414217 original size:14 final size:14
Alignment explanation
Indices: 7414198--7414228 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
7414188 ATTATTTTTA
*
7414198 TAATTATTATTAAT
1 TAATTATAATTAAT
7414212 TAATTATAATTAAT
1 TAATTATAATTAAT
7414226 TAA
1 TAA
7414229 AATATTCTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
TAATTATAATTAAT
Found at i:7414224 original size:10 final size:10
Alignment explanation
Indices: 7414195--7414227 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
7414185 TTTATTATTT
7414195 TTATAATT-A
1 TTATAATTAA
7414204 TTATTAATTAA
1 TTA-TAATTAA
7414215 TTATAATTAA
1 TTATAATTAA
7414225 TTA
1 TTA
7414228 AAATATTCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 3 0.14
10 15 0.68
11 4 0.18
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (10 bp):
TTATAATTAA
Found at i:7419726 original size:37 final size:37
Alignment explanation
Indices: 7419663--7419736 Score: 112
Period size: 37 Copynumber: 2.0 Consensus size: 37
7419653 AAATTTGGGC
*
7419663 GAAAATATATTTCAACAACTACAATCAATCAATTAAA
1 GAAAAGATATTTCAACAACTACAATCAATCAATTAAA
* * *
7419700 GAAAAGATATTTCGACAATTATAATCAATCAATTAAA
1 GAAAAGATATTTCAACAACTACAATCAATCAATTAAA
7419737 ATAAAATAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.53, C:0.14, G:0.05, T:0.28
Consensus pattern (37 bp):
GAAAAGATATTTCAACAACTACAATCAATCAATTAAA
Found at i:7424330 original size:64 final size:65
Alignment explanation
Indices: 7424261--7424402 Score: 164
Period size: 64 Copynumber: 2.2 Consensus size: 65
7424251 AGTTAGTGTG
*** * * * *
7424261 GGTTTGTGGTTGAGTTTATTAAAAATCATGGGTTGTGCTTGCTCTTGA-TAAAAGGCATTTGT-A
1 GGTTTGTGGTTGAGCCCATTAAAAACCATGAGCTGTGCTTGCTCTT-ATTAAAAGGCATTAGTAA
7424324 A
65 A
* *
7424325 GGTTTGTGGTTGAGCCCGTTAAAAGCCATGAGCTGTGCTTGCTCTTATTAAAAGGCATTAGTAAA
1 GGTTTGTGGTTGAGCCCATTAAAAACCATGAGCTGTGCTTGCTCTTATTAAAAGGCATTAGTAAA
7424390 GG-TTGTTGGTTGA
1 GGTTTG-TGGTTGA
7424403 TCACATGAAA
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
63 1 0.02
64 54 0.82
65 11 0.17
ACGTcount: A:0.24, C:0.11, G:0.28, T:0.37
Consensus pattern (65 bp):
GGTTTGTGGTTGAGCCCATTAAAAACCATGAGCTGTGCTTGCTCTTATTAAAAGGCATTAGTAAA
Found at i:7427223 original size:12 final size:12
Alignment explanation
Indices: 7427206--7427233 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
7427196 TTTATGTTTG
7427206 TTTATCATCTTT
1 TTTATCATCTTT
7427218 TTTATCATCTTT
1 TTTATCATCTTT
7427230 TTTA
1 TTTA
7427234 ACTAAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.18, C:0.14, G:0.00, T:0.68
Consensus pattern (12 bp):
TTTATCATCTTT
Found at i:7431340 original size:13 final size:13
Alignment explanation
Indices: 7431322--7431346 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7431312 AGAGAAATTG
7431322 TGATTTTATAAAA
1 TGATTTTATAAAA
7431335 TGATTTTATAAA
1 TGATTTTATAAA
7431347 TTTTCTGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:7438602 original size:23 final size:23
Alignment explanation
Indices: 7438572--7438631 Score: 84
Period size: 23 Copynumber: 2.6 Consensus size: 23
7438562 TATACGTATA
* * *
7438572 CCCATCATTATCATGCACAGCAT
1 CCCATCATCATCATACACACCAT
7438595 CCCATCATCATCATACACACCAT
1 CCCATCATCATCATACACACCAT
*
7438618 CACATCATCATCAT
1 CCCATCATCATCAT
7438632 CACCAGCTCA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.33, C:0.38, G:0.03, T:0.25
Consensus pattern (23 bp):
CCCATCATCATCATACACACCAT
Found at i:7438677 original size:43 final size:43
Alignment explanation
Indices: 7438628--7438750 Score: 149
Period size: 43 Copynumber: 2.9 Consensus size: 43
7438618 CACATCATCA
* * **
7438628 TCATCACCAGCTCATGCGCACTCCCTACTCGCACATGGCTAGG
1 TCATCACCGGCTTATGCGCACTCCCTACTCGCACATAACTAGG
* * * *
7438671 TCATCACCGGGTTATACACACTCCCTACTCGCACATAACTGGG
1 TCATCACCGGCTTATGCGCACTCCCTACTCGCACATAACTAGG
*
7438714 TCATC-CTTGGCTTATGCGCACTCCCTACTCGCACATA
1 TCATCAC-CGGCTTATGCGCACTCCCTACTCGCACATA
7438751 GCCGAGTCAA
Statistics
Matches: 67, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
42 1 0.01
43 66 0.99
ACGTcount: A:0.22, C:0.37, G:0.16, T:0.24
Consensus pattern (43 bp):
TCATCACCGGCTTATGCGCACTCCCTACTCGCACATAACTAGG
Found at i:7444128 original size:49 final size:49
Alignment explanation
Indices: 7444056--7444174 Score: 170
Period size: 49 Copynumber: 2.4 Consensus size: 49
7444046 CATTCATTGT
* * *
7444056 CATAGCCTGGTCATCATCATCATCGGCTTATGCGCACTCCCTACTCGCA
1 CATAGCCGGGTCATCATCATCATCGGCTTATGCACACTCCCTACTCACA
*
7444105 CATAGCCGGGTCATCATCATCATCGGCTTATGCACACTCTCTACTCACA
1 CATAGCCGGGTCATCATCATCATCGGCTTATGCACACTCCCTACTCACA
*
7444154 CATAG-TGGGTCAAT-ATCATCA
1 CATAGCCGGGTC-ATCATCATCA
7444175 CACAACATTA
Statistics
Matches: 64, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
48 12 0.19
49 52 0.81
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (49 bp):
CATAGCCGGGTCATCATCATCATCGGCTTATGCACACTCCCTACTCACA
Found at i:7466669 original size:2 final size:2
Alignment explanation
Indices: 7466662--7466689 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7466652 ATACGTAGTA
7466662 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7466690 TAAAGTTTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7467788 original size:16 final size:17
Alignment explanation
Indices: 7467763--7467805 Score: 61
Period size: 16 Copynumber: 2.6 Consensus size: 17
7467753 GGATTCAATA
*
7467763 AAAATATAAAAAAAAT-
1 AAAATTTAAAAAAAATC
*
7467779 AAAATTTAAAAAGAATC
1 AAAATTTAAAAAAAATC
7467796 AAAATTTAAA
1 AAAATTTAAA
7467806 TTTTGGTTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
16 14 0.58
17 10 0.42
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.23
Consensus pattern (17 bp):
AAAATTTAAAAAAAATC
Found at i:7468829 original size:54 final size:54
Alignment explanation
Indices: 7468747--7468851 Score: 174
Period size: 54 Copynumber: 1.9 Consensus size: 54
7468737 TCTCTCTCAA
7468747 CTCTCTAAACTGTATCAACTCTGTCAACTCTCTGTTAAGCACCATCGTCATTAG
1 CTCTCTAAACTGTATCAACTCTGTCAACTCTCTGTTAAGCACCATCGTCATTAG
* * * *
7468801 CTCTCTGAACTGTATGAGCTCTGTCAACTCTCTGTTGAGCACCATCGTCAT
1 CTCTCTAAACTGTATCAACTCTGTCAACTCTCTGTTAAGCACCATCGTCAT
7468852 CGAGCTATGG
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 47 1.00
ACGTcount: A:0.23, C:0.30, G:0.14, T:0.33
Consensus pattern (54 bp):
CTCTCTAAACTGTATCAACTCTGTCAACTCTCTGTTAAGCACCATCGTCATTAG
Found at i:7469167 original size:22 final size:22
Alignment explanation
Indices: 7469083--7469257 Score: 129
Period size: 23 Copynumber: 7.7 Consensus size: 22
7469073 ATGTGTTAGC
*
7469083 ACATGGCATGTAACATTTTTATTTA
1 ACATGGCATGTAACA--TTT-TTGA
*
7469108 ACATGGCATGTAACATGTTATGA
1 ACATGGCATGTAACAT-TTTTGA
*
7469131 ACATGGCGTGTAACAATTTTTGA
1 ACATGGCATGTAAC-ATTTTTGA
*
7469154 AC-TTGCATGTAACATTTTTGA
1 ACATGGCATGTAACATTTTTGA
* * *
7469175 ACAAGGCGTGTAACAATCTTTGA
1 ACATGGCATGTAAC-ATTTTTGA
* * *
7469198 A-TTTGCATGTAACATTTTCTAA
1 ACATGGCATGTAACATTTT-TGA
** *
7469220 ACATGGCGCGTAACATTTTTTAA
1 ACATGGCATGTAACA-TTTTTGA
* *
7469243 AAATGGCGTGTAACA
1 ACATGGCATGTAACA
7469258 ACATGACTGA
Statistics
Matches: 121, Mismatches: 22, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
21 14 0.12
22 28 0.23
23 56 0.46
24 8 0.07
25 15 0.12
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (22 bp):
ACATGGCATGTAACATTTTTGA
Found at i:7469185 original size:44 final size:44
Alignment explanation
Indices: 7469113--7469240 Score: 175
Period size: 44 Copynumber: 2.9 Consensus size: 44
7469103 ATTTAACATG
*
7469113 GCATGTAACATGTTATGAACATGGCGTGTAACAATTTTTGAACTT
1 GCATGTAACAT-TTTTGAACATGGCGTGTAACAATTTTTGAACTT
* * *
7469158 GCATGTAACATTTTTGAACAAGGCGTGTAACAATCTTTGAATTT
1 GCATGTAACATTTTTGAACATGGCGTGTAACAATTTTTGAACTT
* * *
7469202 GCATGTAACATTTTCTAAACATGGCGCGTAACATTTTTT
1 GCATGTAACATTTT-TGAACATGGCGTGTAACAATTTTT
7469241 AAAAATGGCG
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
44 43 0.59
45 30 0.41
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.37
Consensus pattern (44 bp):
GCATGTAACATTTTTGAACATGGCGTGTAACAATTTTTGAACTT
Found at i:7472618 original size:13 final size:13
Alignment explanation
Indices: 7472600--7472624 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7472590 TATATATATA
7472600 CATATTTTTTTAT
1 CATATTTTTTTAT
7472613 CATATTTTTTTA
1 CATATTTTTTTA
7472625 CTTAATTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (13 bp):
CATATTTTTTTAT
Found at i:7474875 original size:42 final size:42
Alignment explanation
Indices: 7474837--7474918 Score: 128
Period size: 42 Copynumber: 2.0 Consensus size: 42
7474827 TCAAAGCTGG
*
7474837 TGACGGCCCATCTGAAGTTGCTAAAAGCCAAGTTAAAGCTAC
1 TGACGGCCCATCTGAACTTGCTAAAAGCCAAGTTAAAGCTAC
* * *
7474879 TGGCGGCCCATCTGAACTTGCTAGAAGCCAATTTAAAGCT
1 TGACGGCCCATCTGAACTTGCTAAAAGCCAAGTTAAAGCT
7474919 TTTGGTGGCC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.23
Consensus pattern (42 bp):
TGACGGCCCATCTGAACTTGCTAAAAGCCAAGTTAAAGCTAC
Found at i:7474974 original size:21 final size:21
Alignment explanation
Indices: 7474945--7474994 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
7474935 AAGTTGTTGG
* *
7474945 AGGCTCATCCAAAGCTGGTGA
1 AGGCCCATCCAAAGCTAGTGA
* *
7474966 AGGCCCATCCAAAGTTAGTGG
1 AGGCCCATCCAAAGCTAGTGA
7474987 AGGCCCAT
1 AGGCCCAT
7474995 TTGAAGTTGC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.28, T:0.18
Consensus pattern (21 bp):
AGGCCCATCCAAAGCTAGTGA
Found at i:7475897 original size:73 final size:73
Alignment explanation
Indices: 7475775--7475966 Score: 242
Period size: 73 Copynumber: 2.6 Consensus size: 73
7475765 GACAAAATGT
* * * * *
7475775 TCTTAGTCGAGTAACTATGCTTCTTTGTCGATTAAGTCGTCTCTATCTCTGAACCCAGCTTT-TG
1 TCTTAGTCGACTAACAATGCTTCTTAGTCGATTAAGTCGTCTCTATCTCTAAACCCA-ATTTCTG
*
7475839 GCAGTGAGC
65 GCAGTAAGC
* * * * *
7475848 TCTTAGTTGACTAACAATACTTCTTAGTCGATTAAGTCGTCTCTGTCTCTAAACCTAATTTCTTG
1 TCTTAGTCGACTAACAATGCTTCTTAGTCGATTAAGTCGTCTCTATCTCTAAACCCAATTTCTGG
7475913 CAGTAAGC
66 CAGTAAGC
* * *
7475921 TTTTAGTCAACTAACAATGCTTCTTAGTCGATTAAGTCATCTCTAT
1 TCTTAGTCGACTAACAATGCTTCTTAGTCGATTAAGTCGTCTCTAT
7475967 TTTTGAACTG
Statistics
Matches: 101, Mismatches: 17, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
72 3 0.03
73 98 0.97
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.39
Consensus pattern (73 bp):
TCTTAGTCGACTAACAATGCTTCTTAGTCGATTAAGTCGTCTCTATCTCTAAACCCAATTTCTGG
CAGTAAGC
Found at i:7476695 original size:63 final size:64
Alignment explanation
Indices: 7476623--7476746 Score: 223
Period size: 64 Copynumber: 2.0 Consensus size: 64
7476613 CCATAAAAAT
*
7476623 AAGTTATCAGCATCCA-TTTTCAACCATCAGTACACAAAATAATATAAACAGCCCAATATCAAC
1 AAGTTATCAGCATCCAGTTTTCAACCATCAGTACACAAAATAACATAAACAGCCCAATATCAAC
*
7476686 AAGTTATCAGCATTCAGTTTTCAACCATCAGTACACAAAATAACATAAACAGCCCAATATC
1 AAGTTATCAGCATCCAGTTTTCAACCATCAGTACACAAAATAACATAAACAGCCCAATATC
7476747 GTCAGAGTCA
Statistics
Matches: 58, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
63 15 0.26
64 43 0.74
ACGTcount: A:0.44, C:0.25, G:0.07, T:0.24
Consensus pattern (64 bp):
AAGTTATCAGCATCCAGTTTTCAACCATCAGTACACAAAATAACATAAACAGCCCAATATCAAC
Found at i:7492626 original size:145 final size:145
Alignment explanation
Indices: 7492464--7492750 Score: 387
Period size: 145 Copynumber: 2.0 Consensus size: 145
7492454 CCGACGAGTC
* * * *
7492464 GTTAGCATTGTGCGTCTGAAGAGGACCTCTCAGTGGTTGA-GGAGCTATCGTCGCATGGTCCAAC
1 GTTAGCACTGTGAGTCTGAAGAGAACCTATCAGTGGTT-ATGGAGCTATCGTCGCATGGTCCAAC
* * *
7492528 TGCAAACATAAATATGTTATTCGATAATCACATATGGAATTGTTAAACACAAACCGTTATAACCG
65 TACAAACATAAATATGTTATTCGATAATCACATATGGAAGTGTTAAACACAAACCGTTAGAACCG
*
7492593 TCCTTACTGGCTCCTT
130 TCCTTACCGGCTCCTT
* * * *
7492609 GTTAGCACTGTGAGTCTGAGGAGAACCTATCGGTGGTTATGGAGTTATTGTCGCATGGTCCAACT
1 GTTAGCACTGTGAGTCTGAAGAGAACCTATCAGTGGTTATGGAGCTATCGTCGCATGGTCCAACT
* * * * * *
7492674 ATAAACATAGATATGTTATTTGATAATCACATATGGAAGTGTTGAACACAAACCTTTAGAGCCGT
66 ACAAACATAAATATGTTATTCGATAATCACATATGGAAGTGTTAAACACAAACCGTTAGAACCGT
*
7492739 CTTTACCGGCTC
131 CCTTACCGGCTC
7492751 TTCACTGCCA
Statistics
Matches: 122, Mismatches: 19, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
144 1 0.01
145 121 0.99
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (145 bp):
GTTAGCACTGTGAGTCTGAAGAGAACCTATCAGTGGTTATGGAGCTATCGTCGCATGGTCCAACT
ACAAACATAAATATGTTATTCGATAATCACATATGGAAGTGTTAAACACAAACCGTTAGAACCGT
CCTTACCGGCTCCTT
Found at i:7496734 original size:31 final size:31
Alignment explanation
Indices: 7496701--7497118 Score: 532
Period size: 31 Copynumber: 13.5 Consensus size: 31
7496691 GTTAACCCAT
* *
7496701 AATGTTGTAACACGCCATGCATATAACGTAT
1 AATGTGGTAACACGCCATGCATATAACGTAA
* *
7496732 AATGTGGTAACATGCCATGCATATAACGTAT
1 AATGTGGTAACACGCCATGCATATAACGTAA
7496763 AATGTGGTAACACGCCATGCATATAACGTAA
1 AATGTGGTAACACGCCATGCATATAACGTAA
* *
7496794 AATGTTGTAACACACCATGCATATAACGTAA
1 AATGTGGTAACACGCCATGCATATAACGTAA
* *
7496825 AATGTGGTAACACCCCATGCATATAAAGTAA
1 AATGTGGTAACACGCCATGCATATAACGTAA
*
7496856 AATGTGGTAACACGCCATGCATATAAAGTAA
1 AATGTGGTAACACGCCATGCATATAACGTAA
* *
7496887 AATGTTGTAACACGCTATGCATATAACGTAA
1 AATGTGGTAACACGCCATGCATATAACGTAA
* *
7496918 AATATGGTAACACGCCATGCATATAACATAA
1 AATGTGGTAACACGCCATGCATATAACGTAA
* * * * *
7496949 AATATGGTAATATGCCATGTATATAAGGTAA
1 AATGTGGTAACACGCCATGCATATAACGTAA
* *
7496980 AATGTGGTAACACGCCATGCATACAATGTAA
1 AATGTGGTAACACGCCATGCATATAACGTAA
** * * *
7497011 AATGTCATAACACACCATGCATACAACATAA
1 AATGTGGTAACACGCCATGCATATAACGTAA
* *
7497042 AATGTTGTAACACGCCATGCATATAATGTAA
1 AATGTGGTAACACGCCATGCATATAACGTAA
* * * *
7497073 AATGTTGTAACACACCATGCGTATCAA-GTCA
1 AATGTGGTAACACGCCATGCATAT-AACGTAA
*
7497104 AATGTTGTAACACGC
1 AATGTGGTAACACGC
7497119 TAACGTTGAC
Statistics
Matches: 343, Mismatches: 43, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
31 341 0.99
32 2 0.01
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.26
Consensus pattern (31 bp):
AATGTGGTAACACGCCATGCATATAACGTAA
Found at i:7497230 original size:64 final size:63
Alignment explanation
Indices: 7497121--7497241 Score: 145
Period size: 64 Copynumber: 1.9 Consensus size: 63
7497111 TAACACGCTA
** * **
7497121 ACGTTGACACGCCAATCACTATAATTACTGTGTCCTTACATGAACTGGCCTAAAATACCCGTG
1 ACGTTGACACGCCAATCACTATAATTACTGTACCCTTACACGAACTACCCTAAAATACCCGTG
* * *
7497184 ACGTGTGACACGTCAATCAGTGTAATTACTG-ACCCGTTACACGAACTACCCTAAAATA
1 ACGT-TGACACGCCAATCACTATAATTACTGTACCC-TTACACGAACTACCCTAAAATA
7497242 ACCAATGTCG
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
63 6 0.12
64 42 0.88
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (63 bp):
ACGTTGACACGCCAATCACTATAATTACTGTACCCTTACACGAACTACCCTAAAATACCCGTG
Found at i:7497850 original size:47 final size:47
Alignment explanation
Indices: 7497785--7498060 Score: 295
Period size: 47 Copynumber: 5.9 Consensus size: 47
7497775 TGTCACGGAT
* * * *
7497785 CTCCATGGAGTCTGACAAACTCTGAATGCTGGCGTGTTACAGATTCC
1 CTCCATGGCGTGTCACAAACTCTGAATGCTGGCGTGTCACAGATTCC
* * * * *
7497832 CTCCATGTCATGTCACAAACTTTGAACGTTGGCGTGTCACAGATTCC
1 CTCCATGGCGTGTCACAAACTCTGAATGCTGGCGTGTCACAGATTCC
** * * * * *
7497879 CTTGATGGCGTGTCACGAACTCTGAACGCTGACATGTCA-AAATTCC
1 CTCCATGGCGTGTCACAAACTCTGAATGCTGGCGTGTCACAGATTCC
* * *
7497925 CTCCATGGGGTGTCACGAACTCTGAATGCTGGTGTGTCACAGATTCC
1 CTCCATGGCGTGTCACAAACTCTGAATGCTGGCGTGTCACAGATTCC
* * * * *
7497972 TTCCATGACGTGTCACCAACTCTGAACT-CTGTCGTGTCACAAATTCC
1 CTCCATGGCGTGTCACAAACTCTGAA-TGCTGGCGTGTCACAGATTCC
* *
7498019 CTCCATGGCGTGTCACCAACTCTGAATGCTGGCATGTCACAG
1 CTCCATGGCGTGTCACAAACTCTGAATGCTGGCGTGTCACAG
7498061 CCATGTCACA
Statistics
Matches: 187, Mismatches: 39, Indels: 6
0.81 0.17 0.03
Matches are distributed among these distances:
46 39 0.21
47 147 0.79
48 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.28
Consensus pattern (47 bp):
CTCCATGGCGTGTCACAAACTCTGAATGCTGGCGTGTCACAGATTCC
Found at i:7497940 original size:93 final size:94
Alignment explanation
Indices: 7497802--7498060 Score: 306
Period size: 93 Copynumber: 2.8 Consensus size: 94
7497792 GAGTCTGACA
* * * * * * * * * *
7497802 AACTCTGAATGCTGGCGTGTTACAGATTCCCTCCATGTCATGTCACAAACTTTGAACGTTGGCGT
1 AACTCTGAACGCTGACATGTCACAAATTCCCTCCATGGCGTGTCACAAACTCTGAATGCTGGCGT
* * *
7497867 GTCACAGATTCCCTT-GATGGCGTGTCACG
66 GTCACAGATT-CCTTCCATGACGTGTCACC
* * *
7497896 AACTCTGAACGCTGACATGTCA-AAATTCCCTCCATGGGGTGTCACGAACTCTGAATGCTGGTGT
1 AACTCTGAACGCTGACATGTCACAAATTCCCTCCATGGCGTGTCACAAACTCTGAATGCTGGCGT
7497960 GTCACAGATTCCTTCCATGACGTGTCACC
66 GTCACAGATTCCTTCCATGACGTGTCACC
* * * * *
7497989 AACTCTGAACTCTGTCGTGTCACAAATTCCCTCCATGGCGTGTCACCAACTCTGAATGCTGGCAT
1 AACTCTGAACGCTGACATGTCACAAATTCCCTCCATGGCGTGTCACAAACTCTGAATGCTGGCGT
7498054 GTCACAG
66 GTCACAG
7498061 CCATGTCACA
Statistics
Matches: 140, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
92 4 0.03
93 73 0.52
94 63 0.45
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.28
Consensus pattern (94 bp):
AACTCTGAACGCTGACATGTCACAAATTCCCTCCATGGCGTGTCACAAACTCTGAATGCTGGCGT
GTCACAGATTCCTTCCATGACGTGTCACC
Found at i:7498008 original size:140 final size:140
Alignment explanation
Indices: 7497802--7498057 Score: 370
Period size: 140 Copynumber: 1.8 Consensus size: 140
7497792 GAGTCTGACA
* * *
7497802 AACTCTGAATGCTGGCGTGTTACAGATTCCCTCCATGTCATGTCACAAACTTTGAACGTTGGCGT
1 AACTCTGAATGCTGGCGTGTCACAGATTCCCTCCATGACATGTCACAAACTCTGAACGTTGGCGT
* ** *
7497867 GTCACAGATTCCCTTGATGGCGTGTCACGAACTCTGAACGCTGACATGTCAAAATTCCCTCCATG
66 GTCACAAATTCCCTCCATGGCGTGTCACCAACTCTGAACGCTGACATGTCAAAATTCCCTCCATG
7497932 GGGTGTCACG
131 GGGTGTCACG
* * * * *
7497942 AACTCTGAATGCTGGTGTGTCACAGATTCCTTCCATGACGTGTCACCAACTCTGAAC-TCTGTCG
1 AACTCTGAATGCTGGCGTGTCACAGATTCCCTCCATGACATGTCACAAACTCTGAACGT-TGGCG
* *
7498006 TGTCACAAATTCCCTCCATGGCGTGTCACCAACTCTGAATGCTGGCATGTCA
65 TGTCACAAATTCCCTCCATGGCGTGTCACCAACTCTGAACGCTGACATGTCA
7498058 CAGCCATGTC
Statistics
Matches: 101, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
139 1 0.01
140 100 0.99
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (140 bp):
AACTCTGAATGCTGGCGTGTCACAGATTCCCTCCATGACATGTCACAAACTCTGAACGTTGGCGT
GTCACAAATTCCCTCCATGGCGTGTCACCAACTCTGAACGCTGACATGTCAAAATTCCCTCCATG
GGGTGTCACG
Found at i:7498150 original size:57 final size:58
Alignment explanation
Indices: 7498021--7498224 Score: 243
Period size: 58 Copynumber: 3.5 Consensus size: 58
7498011 CAAATTCCCT
* * ** * * * *
7498021 CCATGGCGTGTCACCAACTCTGAATGCTGGCATGTCACAGCCATGTCACACAATCCAA
1 CCATGGCGTGTCACAAACTCTAAACCCTGCCATGTCACAGCCGTGCCACACATTCCAA
*
7498079 CCATGGCGTGTCACAAACTCTAAACCCTGCCATGTCACAACCGTG-CACACATTCCAA
1 CCATGGCGTGTCACAAACTCTAAACCCTGCCATGTCACAGCCGTGCCACACATTCCAA
* **
7498136 CCATGTCGTGTCACAAACTCTAAACCCTATCATGTCACAGCCGTGCCACACATTCCTAA
1 CCATGGCGTGTCACAAACTCTAAACCCTGCCATGTCACAGCCGTGCCACACATTCC-AA
* *
7498195 -CAT-GCTGTTTCACAAACTCTAAACCATGCC
1 CCATGGC-GTGTCACAAACTCTAAACCCTGCC
7498225 CTGCCATAGC
Statistics
Matches: 126, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
57 53 0.42
58 71 0.56
59 2 0.02
ACGTcount: A:0.29, C:0.35, G:0.14, T:0.22
Consensus pattern (58 bp):
CCATGGCGTGTCACAAACTCTAAACCCTGCCATGTCACAGCCGTGCCACACATTCCAA
Found at i:7505850 original size:23 final size:23
Alignment explanation
Indices: 7505824--7505870 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
7505814 ACCAATAAGT
7505824 AAGAGCCATAGAATGACAATTGG
1 AAGAGCCATAGAATGACAATTGG
*
7505847 AAGAGCCATCGAATGACAATTGG
1 AAGAGCCATAGAATGACAATTGG
7505870 A
1 A
7505871 GCAAATATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.15, G:0.26, T:0.17
Consensus pattern (23 bp):
AAGAGCCATAGAATGACAATTGG
Found at i:7506203 original size:13 final size:13
Alignment explanation
Indices: 7506185--7506209 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7506175 TGAAACAACA
7506185 ATATATATATATT
1 ATATATATATATT
7506198 ATATATATATAT
1 ATATATATATAT
7506210 ATAAACAAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATATATATATATT
Found at i:7508803 original size:21 final size:21
Alignment explanation
Indices: 7508732--7508804 Score: 58
Period size: 21 Copynumber: 3.3 Consensus size: 21
7508722 TACAAAAACA
* * *
7508732 TGTTACACGCCATGGTTACGT
1 TGTTACACGTCATGATTAAGT
* *
7508753 TGTTACACGTCAT-ATACAAAAAT
1 TGTTACACGTCATGAT---TAAGT
7508776 ATGTTACACGTCATGATTAAGT
1 -TGTTACACGTCATGATTAAGT
7508798 TGTTACA
1 TGTTACA
7508805 TACCATGTTG
Statistics
Matches: 40, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
20 1 0.03
21 19 0.47
22 3 0.08
23 2 0.05
24 13 0.32
25 2 0.05
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (21 bp):
TGTTACACGTCATGATTAAGT
Found at i:7508812 original size:121 final size:122
Alignment explanation
Indices: 7508598--7508871 Score: 356
Period size: 121 Copynumber: 2.3 Consensus size: 122
7508588 GTTGCACGCT
* ** * * * *
7508598 ATATACAAAAGCATGTTACATATCATGATTAGGTTGTTACATGCGATGTACAAAAATATGTGATA
1 ATATACAAAAACATGTTACACGTCATGATTACGTTGTTACACGCGATATACAAAAATATGTGACA
* *
7508663 CGTCATGATAAGGTTGTTACATGCCATGTTGAAAAAAAA-TACTATTGTTACACACC
66 CGTCATGATAAGGTTGTTACATACCATGTTGAAAAAAAATTAATATTGTTACACACC
* * *
7508719 ATATACAAAAACATGTTACACGCCATGGTTACGTTGTTACACGTC-ATATACAAAAATATGTTAC
1 ATATACAAAAACATGTTACACGTCATGATTACGTTGTTACACG-CGATATACAAAAATATGTGAC
* *
7508783 ACGTCATGATTAA-GTTGTTACATACCATGTTGAAAAAAAATTAATGTTGTTACACGCC
65 ACGTCATGA-TAAGGTTGTTACATACCATGTTGAAAAAAAATTAATATTGTTACACACC
* * *
7508841 ATGTATAAAAACATGTTGCACGTCATGATTA
1 ATATACAAAAACATGTTACACGTCATGATTA
7508872 AAAAAAGTTA
Statistics
Matches: 131, Mismatches: 19, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
121 87 0.66
122 44 0.34
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (122 bp):
ATATACAAAAACATGTTACACGTCATGATTACGTTGTTACACGCGATATACAAAAATATGTGACA
CGTCATGATAAGGTTGTTACATACCATGTTGAAAAAAAATTAATATTGTTACACACC
Found at i:7508819 original size:45 final size:45
Alignment explanation
Indices: 7508707--7508810 Score: 145
Period size: 45 Copynumber: 2.3 Consensus size: 45
7508697 AAAAATACTA
* *
7508707 TTGTTACACACCATATACAAAAACATGTTACACGCCATGGTTACG
1 TTGTTACACACCATATACAAAAACATGTTACACGCCATGATTAAG
** * *
7508752 TTGTTACACGTCATATACAAAAATATGTTACACGTCATGATTAAG
1 TTGTTACACACCATATACAAAAACATGTTACACGCCATGATTAAG
*
7508797 TTGTTACATACCAT
1 TTGTTACACACCAT
7508811 GTTGAAAAAA
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 50 1.00
ACGTcount: A:0.36, C:0.20, G:0.12, T:0.32
Consensus pattern (45 bp):
TTGTTACACACCATATACAAAAACATGTTACACGCCATGATTAAG
Found at i:7508851 original size:31 final size:30
Alignment explanation
Indices: 7508791--7508851 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 30
7508781 ACACGTCATG
*
7508791 ATTAAGTTGTTACATACCATGTTGAAAAAAA
1 ATTAAGTTGTTACACACCATGTT-AAAAAAA
*
7508822 ATTAATGTTGTTACACGCCATGTATAAAAA
1 ATTAA-GTTGTTACACACCATGT-TAAAAA
7508852 CATGTTGCAC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
31 5 0.19
32 20 0.77
33 1 0.04
ACGTcount: A:0.43, C:0.11, G:0.13, T:0.33
Consensus pattern (30 bp):
ATTAAGTTGTTACACACCATGTTAAAAAAA
Found at i:7508862 original size:24 final size:24
Alignment explanation
Indices: 7508830--7508895 Score: 62
Period size: 24 Copynumber: 2.7 Consensus size: 24
7508820 AAATTAATGT
7508830 TGTTACACGCCATG-TATAAAAACA
1 TGTTACACGCCATGAT-TAAAAACA
* * *
7508854 TGTTGCACGTCATGATTAAAAAAA
1 TGTTACACGCCATGATTAAAAACA
*
7508878 GTTATTACACGCCATGAT
1 --TGTTACACGCCATGAT
7508896 GCATGCCTAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
24 19 0.58
25 1 0.03
26 13 0.39
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (24 bp):
TGTTACACGCCATGATTAAAAACA
Found at i:7515605 original size:12 final size:12
Alignment explanation
Indices: 7515588--7515612 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7515578 AAGAAAATAG
7515588 AATATTTTATTT
1 AATATTTTATTT
7515600 AATATTTTATTT
1 AATATTTTATTT
7515612 A
1 A
7515613 GTTTGATTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (12 bp):
AATATTTTATTT
Found at i:7519268 original size:13 final size:13
Alignment explanation
Indices: 7519252--7519276 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7519242 TTTCAGAAAA
7519252 TTTATAAAATCAT
1 TTTATAAAATCAT
7519265 TTTATAAAATCA
1 TTTATAAAATCA
7519277 CAATTTCTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTATAAAATCAT
Found at i:7520529 original size:20 final size:20
Alignment explanation
Indices: 7520504--7520549 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
7520494 CTTCTAAACC
*
7520504 TCAAATCATATTCCAATAAG
1 TCAAATCATACTCCAATAAG
* *
7520524 TCAAATTATACTCCAATGAG
1 TCAAATCATACTCCAATAAG
7520544 TCAAAT
1 TCAAAT
7520550 GGGGCCAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.43, C:0.20, G:0.07, T:0.30
Consensus pattern (20 bp):
TCAAATCATACTCCAATAAG
Found at i:7524715 original size:5 final size:5
Alignment explanation
Indices: 7524702--7524741 Score: 53
Period size: 5 Copynumber: 8.0 Consensus size: 5
7524692 CTATTAAATC
* **
7524702 TAACC TAACT TAACT TAACT TAACT TATTT TAACT TAACT
1 TAACT TAACT TAACT TAACT TAACT TAACT TAACT TAACT
7524742 GGACTTGGGG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.38, C:0.20, G:0.00, T:0.42
Consensus pattern (5 bp):
TAACT
Found at i:7524818 original size:15 final size:15
Alignment explanation
Indices: 7524780--7524828 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
7524770 AATTTCTTAA
7524780 AAAAGCTTTAAAACT
1 AAAAGCTTTAAAACT
*
7524795 AAAAACTTTAAAA-T
1 AAAAGCTTTAAAACT
* *
7524809 CCAAAGCTTTAAAACG
1 -AAAAGCTTTAAAACT
7524825 AAAA
1 AAAA
7524829 TCTCTGATCC
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
14 1 0.04
15 26 0.96
ACGTcount: A:0.57, C:0.14, G:0.06, T:0.22
Consensus pattern (15 bp):
AAAAGCTTTAAAACT
Found at i:7537192 original size:20 final size:20
Alignment explanation
Indices: 7537167--7537212 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
7537157 CGTATAAACC
*
7537167 TCAAATCATATTCCAATAAG
1 TCAAATCATACTCCAATAAG
* *
7537187 TCAAATTATACTCCAATGAG
1 TCAAATCATACTCCAATAAG
7537207 TCAAAT
1 TCAAAT
7537213 AGGGCCAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.43, C:0.20, G:0.07, T:0.30
Consensus pattern (20 bp):
TCAAATCATACTCCAATAAG
Found at i:7539209 original size:43 final size:43
Alignment explanation
Indices: 7539140--7539224 Score: 134
Period size: 43 Copynumber: 2.0 Consensus size: 43
7539130 AAGGAGGACG
*
7539140 TGAAAATTAAAAGTGCCATCAAAAGTTCAATATTTTCTATGGT
1 TGAAAATTAAAAGTGCCATCAAAAGTTCAATATTTCCTATGGT
* **
7539183 TGAAAATTAAAAGTGCCTTCGGAAGTTCAATATTTCCTATGG
1 TGAAAATTAAAAGTGCCATCAAAAGTTCAATATTTCCTATGG
7539225 CTAGCTTACC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.34
Consensus pattern (43 bp):
TGAAAATTAAAAGTGCCATCAAAAGTTCAATATTTCCTATGGT
Found at i:7542967 original size:6 final size:6
Alignment explanation
Indices: 7542955--7542997 Score: 61
Period size: 6 Copynumber: 7.2 Consensus size: 6
7542945 CGTCTTCAAG
*
7542955 TTCATC TTTATC TTCATC TTCATC TTCATC TTCAGT- TTCATC T
1 TTCATC TTCATC TTCATC TTCATC TTCATC TTCA-TC TTCATC T
7542998 CTTTCTATGT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
5 1 0.03
6 31 0.94
7 1 0.03
ACGTcount: A:0.16, C:0.28, G:0.02, T:0.53
Consensus pattern (6 bp):
TTCATC
Found at i:7542970 original size:18 final size:18
Alignment explanation
Indices: 7542947--7542997 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
7542937 GTAGTCGTCG
*
7542947 TCTTCAAGTTCATCTTTA
1 TCTTCAAGTTCATCTTCA
**
7542965 TCTTCATCTTCATCTTCA
1 TCTTCAAGTTCATCTTCA
7542983 TCTTC-AGTTTCATCT
1 TCTTCAAG-TTCATCT
7542998 CTTTCTATGT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.18, C:0.27, G:0.04, T:0.51
Consensus pattern (18 bp):
TCTTCAAGTTCATCTTCA
Found at i:7546203 original size:6 final size:6
Alignment explanation
Indices: 7546191--7546225 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
7546181 GCACTTTAAC
7546191 TTATTT TT-TTT TTATTT TTATTT TTATTT TTATTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT
7546226 AATTATTAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.18
6 23 0.82
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (6 bp):
TTATTT
Found at i:7548922 original size:39 final size:39
Alignment explanation
Indices: 7548877--7549044 Score: 216
Period size: 39 Copynumber: 4.4 Consensus size: 39
7548867 GTGTGTAGTA
**
7548877 TGGGAGAGCACATGCCGATGATATATGCCATGTGCGGTG
1 TGGGAGAGCACATGATGATGATATATGCCATGTGCGGTG
*
7548916 TGGGAGAGCACATGATGATGATATATGCCATGTGCAGTG
1 TGGGAGAGCACATGATGATGATATATGCCATGTGCGGTG
* *
7548955 TGGGAGAGCACATGATGATGATATCTGCCATGTGTGGTG
1 TGGGAGAGCACATGATGATGATATATGCCATGTGCGGTG
* ** * *
7548994 TGGGAGTGCATGTGAGGATG-T-TA-GCTATGTGCGGTG
1 TGGGAGAGCACATGATGATGATATATGCCATGTGCGGTG
*
7549030 TGGGAGTGCACATGA
1 TGGGAGAGCACATGA
7549045 GCTGAGTTGA
Statistics
Matches: 114, Mismatches: 15, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
36 24 0.21
37 1 0.01
38 1 0.01
39 88 0.77
ACGTcount: A:0.23, C:0.13, G:0.38, T:0.26
Consensus pattern (39 bp):
TGGGAGAGCACATGATGATGATATATGCCATGTGCGGTG
Found at i:7551253 original size:163 final size:162
Alignment explanation
Indices: 7550983--7551296 Score: 565
Period size: 163 Copynumber: 1.9 Consensus size: 162
7550973 TACGTGTTGA
* * *
7550983 ATATTAATGATTTGAGACAAGAGATCTTAGAGGAGGCCCATGTGGCAGCATATGTAGTACATCCA
1 ATATTAATGATTTGAGACAAGAGATCTTAAAGAAAGCCCATGTGGCAGCATATGTAGTACATCCA
7551048 AGCACCGCCAAGATGTATCATGACTTGATGGAAACGTACTGGTGGGATGGCCTAAAGAGAGATGT
66 AGCACCGCCAAGATGTATCATGACTTGATGGAAACGTACTGGTGGGATGGCCTAAAGAGAGATGT
7551113 AGTAGAATATGTGGCTAAATNTGTATGTGCTAG
131 AGTAGAATATGTGGCTAAAT-TGTATGTGCTAG
* * *
7551146 ATATTAATGATTTGAGACGAGAGATCTTAAAGAAAGCCTATGTGGTAGCATATGTAGTACATCCA
1 ATATTAATGATTTGAGACAAGAGATCTTAAAGAAAGCCCATGTGGCAGCATATGTAGTACATCCA
7551211 AGCACCGCCAAGATGTATCATGACTTGATGGAAACGTACTGGTGGGATGGCCTAAAGAGAGATGT
66 AGCACCGCCAAGATGTATCATGACTTGATGGAAACGTACTGGTGGGATGGCCTAAAGAGAGATGT
7551276 AGTAGAATATGTGGCTAAATT
131 AGTAGAATATGTGGCTAAATT
7551297 TCTAGTGTGC
Statistics
Matches: 145, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
162 1 0.01
163 144 0.99
ACGTcount: A:0.33, C:0.14, G:0.27, T:0.26
Consensus pattern (162 bp):
ATATTAATGATTTGAGACAAGAGATCTTAAAGAAAGCCCATGTGGCAGCATATGTAGTACATCCA
AGCACCGCCAAGATGTATCATGACTTGATGGAAACGTACTGGTGGGATGGCCTAAAGAGAGATGT
AGTAGAATATGTGGCTAAATTGTATGTGCTAG
Found at i:7553775 original size:856 final size:855
Alignment explanation
Indices: 7551146--7553974 Score: 5248
Period size: 857 Copynumber: 3.3 Consensus size: 855
7551136 TATGTGCTAG
* * * * * *
7551146 ATATTAATGATTTGAGACGAGAGATCTTAAAGAAAGCCTATGTGGTAGCATATGTAGTACATCCA
1 ATATTAATGATTTGAGACAAGAGATCTTAGAGGAGGCCCATGTGGCAGCATATGTAGTACATCCA
7551211 AGCACCGCCAAGATGTATCATGACTTGATGGAAACGTACTGGTGGGATGGCCTAAAGAGAGATGT
66 AGCACCGCCAAGATGTATCATGACTTGATGGAAACGTACTGGTGGGATGGCCTAAAGAGAGATGT
7551276 AGTAGAATATGTGGCTAAATTTCTAGTGTGCCAACAGGTTAAGACAATGCATTGGAGACTTGTCG
131 AGTAGAATATGTGGCTAAATTTCTAGTGTGCCAACAGGTTAAGACAATGCATTGGAGACTTGTCG
7551341 ACTTATTACAGCCCTTACTTGTTCCCGAATGGAAGTGGGAACATATTTCAATGGAGTTTATGACT
196 ACTTATTACAGCCCTTACTTGTTCCCGAATGGAAGTGGGAACATATTTCAATGGAGTTTATGACT
7551406 AATTCCCTCTAGCCTCCCCTCTCAATTTGGCTTCATAAGGATGTATTTATAGGGCTCAGAAACTC
261 AATTCCCTCTAGCCTCCCCTCTCAATTTGGCTTCATAAGGATGTATTTATAGGGCTCAGAAACTC
7551471 ATTCTAGTCTAATTCAAACTCCAATATTCAAAAAGACATTTTTACAAACCTAGGGCACTGTTGCG
326 ATTCTAGTCTAATTCAAACTCCAATATTCAAAAAGACATTTTTACAAACCTAGGGCACTGTTGCG
7551536 GTAGCATTTTAGTGCCATAATGTCAACTTGTGGTGCCTTTTTCTCCTTGTTCAATGAATAATTAC
391 GTAGCATTTTAGTGCCATAATGTCAACTTGTGGTGCCTTTTTCTCCTTGTTCAATGAATAATTAC
7551601 GAAAAGTGACAAACATTAAATTATAGCTCTTTCTCTTAGGTTTCCAATGGTCCAAAAATCACCTC
456 GAAAAGTGACAAACATTAAATTATAGCTCTTTCTCTTAGGTTTCCAATGGTCCAAAAATCACCTC
7551666 ATTTGGAGTTATGTAGACAAAGTTATAGTTAAAATACCAAGACATGTGAAAAGCAAGTCTACACT
521 ATTTGGAGTTATGTAGACAAAGTTATAGTTAAAATACCAAGACATGTGAAAAGCAAGTCTACACT
7551731 TAGAATGCCTTTTCCTAGGCCAATCAAAAGTTCTTCTTCAAAGCACACCTTTAAAAGCACAATTT
586 TAGAATGCCTTTTCCTAGGCCAATCAAAAGTTCTTCTTCAAAGCACACCTTTAAAAGCACAATTT
7551796 AATCAATAGTAGTTTTTCTTAAGCAATTTAATATTTAACTTAGCATAAAATAACCTAAATTCAAT
651 AATCAATAGTAGTTTTTCTTAAGCAATTTAATATTTAACTTAGCATAAAATAACCTAAATTCAAT
7551861 TGACCTAACATAATTAACTATAATTAAATAAATAACTAAAAACAACTAAAATATATACTAAAACT
716 TGACCTAACATAATTAACTATAATTAAATAAATAACTAAAAACAACTAAAATATATACTAAAACT
7551926 CAAAAACCTAGCAACTTAATGTCTAAAATTTAGACCAAATAACTGAATATCATAGAGTTTTCATG
781 CAAAAACCTAGCAACTTAATGTCTAAAATTTAGACCAAATAACTGAATATCATAGAGTTTTCATG
7551991 TACGTGTTGA
846 TACGTGTTGA
*
7552001 ATATTAATGATTTGAGACAAGAGATCTTAGAGGAGGCCCATGTGGCAGCATATGTAGTACACCCA
1 ATATTAATGATTTGAGACAAGAGATCTTAGAGGAGGCCCATGTGGCAGCATATGTAGTACATCCA
7552066 AGCACCGCCAAGATGTATCATGACTTGATGGAAACGTACTGGTGGGATGGCCTAAAGAGAGATGT
66 AGCACCGCCAAGATGTATCATGACTTGATGGAAACGTACTGGTGGGATGGCCTAAAGAGAGATGT
7552131 AGTAGAATATGTGGCTAAATTTCTAGTGTGCCAACAGGTTAAGACAATGCATTGGAGACTTGTCG
131 AGTAGAATATGTGGCTAAATTTCTAGTGTGCCAACAGGTTAAGACAATGCATTGGAGACTTGTCG
7552196 ACTTATTACAGCCCTTACTTGTTCCCGAATGGAAGTGGGAACATATTTCAATGGAGTTTATGACT
196 ACTTATTACAGCCCTTACTTGTTCCCGAATGGAAGTGGGAACATATTTCAATGGAGTTTATGACT
*
7552261 AATTCCCTCTAGCCTCCCTCCTTTCAATTTGGCTTCATAAGGATGTATTTATAGGGCTCAGAAAC
261 AATTCCCTCTAGCCT-CC-CCTCTCAATTTGGCTTCATAAGGATGTATTTATAGGGCTCAGAAAC
7552326 TCATTCTAGTCTAATTCAAACTCCAATATTCAAAAAGACATTTTTACAAACCTAGGGCACTGTTG
324 TCATTCTAGTCTAATTCAAACTCCAATATTCAAAAAGACATTTTTACAAACCTAGGGCACTGTTG
7552391 CGGTAGCATTTTAGTGCCATAATGTCAACTTGTGGTGCCTTTTTCTCCTTGTTCAATGAATAATT
389 CGGTAGCATTTTAGTGCCATAATGTCAACTTGTGGTGCCTTTTTCTCCTTGTTCAATGAATAATT
7552456 ACGAAAAGTGACAAACATTAAATTATAGCTCTTTCTCTTAGGTTTCCAATGGTCCAAAAATCACC
454 ACGAAAAGTGACAAACATTAAATTATAGCTCTTTCTCTTAGGTTTCCAATGGTCCAAAAATCACC
7552521 TCATTTGGAGTTATGTAGACAAAGTTATAGTTAAAATACCAAGACATGTGAAAAGCAAGTCTACA
519 TCATTTGGAGTTATGTAGACAAAGTTATAGTTAAAATACCAAGACATGTGAAAAGCAAGTCTACA
7552586 CTTAGAATGCCTTTTCCTAGGCCAATCAAAAGTTCTTCTTCAAAGCACACCTTTAAAAGCACAAT
584 CTTAGAATGCCTTTTCCTAGGCCAATCAAAAGTTCTTCTTCAAAGCACACCTTTAAAAGCACAAT
7552651 TTAATCAATAGTAGTTTTTCTTAAGCAATTTAATATTTAACTTAGCATAAAATAACCTAAATTCA
649 TTAATCAATAGTAGTTTTTCTTAAGCAATTTAATATTTAACTTAGCATAAAATAACCTAAATTCA
7552716 ATTGACCTAACATAATTAACTATAATTAAATAAATAACTAAAAACAACTAAAATATATACTAAAA
714 ATTGACCTAACATAATTAACTATAATTAAATAAATAACTAAAAACAACTAAAATATATACTAAAA
7552781 CTCAAAAACCTAGCAACTTAATGTCTAAAATTTAGACCAAATAACTGAATATCATAGAGTTTTCA
779 CTCAAAAACCTAGCAACTTAATGTCTAAAATTTAGACCAAATAACTGAATATCATAGAGTTTTCA
7552846 TGTACGTGTTGA
844 TGTACGTGTTGA
7552858 ATATTAATGATTTGAGACAAGAGATCTTAGAGGAGGCCCATGTGGCAGCATATGTAGTACATCCA
1 ATATTAATGATTTGAGACAAGAGATCTTAGAGGAGGCCCATGTGGCAGCATATGTAGTACATCCA
* * * * * * * * **
7552923 AGCACCACCAAGATGTACCATGACTTAAGGGAGATGTACTAGTGGGAAGATCTAAAGAGAGATGT
66 AGCACCGCCAAGATGTATCATGACTTGATGGAAACGTACTGGTGGGATGGCCTAAAGAGAGATGT
7552988 AGTAGAATATGTGGCTAAATTTCTAGTGTGCCAACAGGTTAAGACAATGCATTGGAGACTTGTCG
131 AGTAGAATATGTGGCTAAATTTCTAGTGTGCCAACAGGTTAAGACAATGCATTGGAGACTTGTCG
7553053 ACTTATTACAGCCCTTACTTGTTCCCGAATGGAAGTGGGAACATATTTCAATGGAGTTTATGACT
196 ACTTATTACAGCCCTTACTTGTTCCCGAATGGAAGTGGGAACATATTTCAATGGAGTTTATGACT
7553118 AATTCCCTCTAGCCTCCCCTCTCAATTTGGCTTCATAAGGATGTATTTATAGGGCTCAGAAACTC
261 AATTCCCTCTAGCCTCCCCTCTCAATTTGGCTTCATAAGGATGTATTTATAGGGCTCAGAAACTC
7553183 ATTCTAGTCTAATTCAAACTCCAATATTCAAAAAGACATTTTTACAAACCTAGGGCACTGTTGCG
326 ATTCTAGTCTAATTCAAACTCCAATATTCAAAAAGACATTTTTACAAACCTAGGGCACTGTTGCG
7553248 GTAGCATTTTAGTGCCATAATGTCAACTTGTGGTGCCTTTTTCTCCTTGTTCAATGAATAATTAC
391 GTAGCATTTTAGTGCCATAATGTCAACTTGTGGTGCCTTTTTCTCCTTGTTCAATGAATAATTAC
* * * * * * * *
7553313 GAAAAGTGACAAACATAAAAGTTTTAGATCTTCCTCTTATCG-TTCTAGTGGTCAAAAAATCACC
456 GAAAAGTGACAAACATTAAA-TTATAGCTCTTTCTCTTA-GGTTTCCAATGGTCCAAAAATCACC
7553377 TCATTTGGAGTTATGTAGACAAAGTTATAGTTAAAATACCAAGACATGTGAAAAGCAAGTCTACA
519 TCATTTGGAGTTATGTAGACAAAGTTATAGTTAAAATACCAAGACATGTGAAAAGCAAGTCTACA
7553442 CTTAGAATGCCTTTTCCTAGGCCAATCAAAAGTTCTTCTTCAAAGCACACCTTTAAAAGCACAAT
584 CTTAGAATGCCTTTTCCTAGGCCAATCAAAAGTTCTTCTTCAAAGCACACCTTTAAAAGCACAAT
**** * * * * ** * *
7553507 TTAATCAATAGTAACCATACTT-AGACAAATCAACAACTAACTTAGCCTAAAATAATCTAAATTC
649 TTAATCAATAGTAGTTTTTCTTAAG-CAATTTAATATTTAACTTAGCATAAAATAACCTAAATTC
7553571 AATTGACCTAACATAATTAACTATAATTAAATAAATAACTAAAAACAACTAAAATATATACTAAA
713 AATTGACCTAACATAATTAACTATAATTAAATAAATAACTAAAAACAACTAAAATATATACTAAA
7553636 ACTCAAAAACCTAGCAACTTAATGTCTAAAATTTAGACCAAATAACTGAATATCATAGAGTTTTC
778 ACTCAAAAACCTAGCAACTTAATGTCTAAAATTTAGACCAAATAACTGAATATCATAGAGTTTTC
7553701 ATGTACGTGTTGA
843 ATGTACGTGTTGA
7553714 ATATTAATGATTTGAGACAAGAGATCTTAGAGGAGGCCCATGTGGCAGCATATGTAGTACATCCA
1 ATATTAATGATTTGAGACAAGAGATCTTAGAGGAGGCCCATGTGGCAGCATATGTAGTACATCCA
7553779 AGCACCGCCAAGATGTATCATGACTTGATGGAAACGTACTGGTGGGATGGCCTAAAGAGAGATGT
66 AGCACCGCCAAGATGTATCATGACTTGATGGAAACGTACTGGTGGGATGGCCTAAAGAGAGATGT
7553844 AGTAGAATATGTGGCTAAATTTCTAGTGTGCCAACAGGTTAAGACAATGCATTGGAGACTTGTCG
131 AGTAGAATATGTGGCTAAATTTCTAGTGTGCCAACAGGTTAAGACAATGCATTGGAGACTTGTCG
*
7553909 ACTTATTACAGCCCTTACTTGTTCCTGAATGGAAGTGGGAACATATTTCAATGGAGTTTATGACT
196 ACTTATTACAGCCCTTACTTGTTCCCGAATGGAAGTGGGAACATATTTCAATGGAGTTTATGACT
7553974 A
261 A
7553975 GACCACCCCG
Statistics
Matches: 1918, Mismatches: 51, Indels: 9
0.97 0.03 0.00
Matches are distributed among these distances:
855 466 0.24
856 610 0.32
857 842 0.44
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30
Consensus pattern (855 bp):
ATATTAATGATTTGAGACAAGAGATCTTAGAGGAGGCCCATGTGGCAGCATATGTAGTACATCCA
AGCACCGCCAAGATGTATCATGACTTGATGGAAACGTACTGGTGGGATGGCCTAAAGAGAGATGT
AGTAGAATATGTGGCTAAATTTCTAGTGTGCCAACAGGTTAAGACAATGCATTGGAGACTTGTCG
ACTTATTACAGCCCTTACTTGTTCCCGAATGGAAGTGGGAACATATTTCAATGGAGTTTATGACT
AATTCCCTCTAGCCTCCCCTCTCAATTTGGCTTCATAAGGATGTATTTATAGGGCTCAGAAACTC
ATTCTAGTCTAATTCAAACTCCAATATTCAAAAAGACATTTTTACAAACCTAGGGCACTGTTGCG
GTAGCATTTTAGTGCCATAATGTCAACTTGTGGTGCCTTTTTCTCCTTGTTCAATGAATAATTAC
GAAAAGTGACAAACATTAAATTATAGCTCTTTCTCTTAGGTTTCCAATGGTCCAAAAATCACCTC
ATTTGGAGTTATGTAGACAAAGTTATAGTTAAAATACCAAGACATGTGAAAAGCAAGTCTACACT
TAGAATGCCTTTTCCTAGGCCAATCAAAAGTTCTTCTTCAAAGCACACCTTTAAAAGCACAATTT
AATCAATAGTAGTTTTTCTTAAGCAATTTAATATTTAACTTAGCATAAAATAACCTAAATTCAAT
TGACCTAACATAATTAACTATAATTAAATAAATAACTAAAAACAACTAAAATATATACTAAAACT
CAAAAACCTAGCAACTTAATGTCTAAAATTTAGACCAAATAACTGAATATCATAGAGTTTTCATG
TACGTGTTGA
Found at i:7555475 original size:25 final size:25
Alignment explanation
Indices: 7555417--7555476 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 25
7555407 GTGGTCACAA
* * *
7555417 CCATGTATATTAACTTGTGGCCTAG
1 CCATGTATATCAACCTGTGACCTAG
** *
7555442 CCACATATATCAACCTGTGACCTTG
1 CCATGTATATCAACCTGTGACCTAG
7555467 CCATGTATAT
1 CCATGTATAT
7555477 ATATCACAGA
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.33
Consensus pattern (25 bp):
CCATGTATATCAACCTGTGACCTAG
Found at i:7560249 original size:54 final size:54
Alignment explanation
Indices: 7560190--7560297 Score: 189
Period size: 54 Copynumber: 2.0 Consensus size: 54
7560180 CATGTAATAG
* *
7560190 TAACTTCACTTGTAAATTCCATCAAGCTAAGCAATCTCACTTGCATTTCACTTT
1 TAACTTCACATGCAAATTCCATCAAGCTAAGCAATCTCACTTGCATTTCACTTT
*
7560244 TAACTTCACATGCAAATTCCATCAAGCTAAGCAATCTCGCTTGCATTTCACTTT
1 TAACTTCACATGCAAATTCCATCAAGCTAAGCAATCTCACTTGCATTTCACTTT
7560298 ACTTGCATCC
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.35
Consensus pattern (54 bp):
TAACTTCACATGCAAATTCCATCAAGCTAAGCAATCTCACTTGCATTTCACTTT
Found at i:7565652 original size:21 final size:20
Alignment explanation
Indices: 7565626--7565667 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
7565616 TAATTTAAAA
7565626 TAAAATAACATAAAATTTAAC
1 TAAAATAAC-TAAAATTTAAC
*
7565647 TAAAATAACTTAAA-TTAAC
1 TAAAATAACTAAAATTTAAC
7565666 TA
1 TA
7565668 CTCAACATGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 7 0.35
20 4 0.20
21 9 0.45
ACGTcount: A:0.60, C:0.10, G:0.00, T:0.31
Consensus pattern (20 bp):
TAAAATAACTAAAATTTAAC
Found at i:7581830 original size:72 final size:71
Alignment explanation
Indices: 7581713--7581908 Score: 259
Period size: 72 Copynumber: 2.7 Consensus size: 71
7581703 TGTGAATGTG
* * * * *
7581713 AAATGCCCACAAACCTAGGTATGATAGTGGATGATTAAGTCTCCACCACTTAATTATTAAATGTG
1 AAATG-CCACAAACATAGTTATGAGAGTGGATGAGTAAGTCTCCACCACTTAATTATTAAATGCG
7581778 GATGGTA
65 GATGGTA
* *
7581785 AAATGACCACAAACATAGTTATGAGAGTGGATGAGTAAGTCTCCACCACTTGATTGTTAAATGCG
1 AAATG-CCACAAACATAGTTATGAGAGTGGATGAGTAAGTCTCCACCACTTAATTATTAAATGCG
7581850 GATGGTA
65 GATGGTA
* *
7581857 AAATGCCTACAAATATAAATTATGAGAGTGGATGAGTAAGT-TCCCACCACTT
1 AAATGCC-ACAAACAT-AGTTATGAGAGTGGATGAGTAAGTCT-CCACCACTT
7581909 GATGCTTATG
Statistics
Matches: 111, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
71 2 0.02
72 77 0.69
73 32 0.29
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28
Consensus pattern (71 bp):
AAATGCCACAAACATAGTTATGAGAGTGGATGAGTAAGTCTCCACCACTTAATTATTAAATGCGG
ATGGTA
Found at i:7582103 original size:36 final size:35
Alignment explanation
Indices: 7582052--7582145 Score: 98
Period size: 36 Copynumber: 2.7 Consensus size: 35
7582042 CCATGAATGC
* ** * *
7582052 ATAAAGGCTAGATGTGGGGCGTTGCACCATACGTG
1 ATAAAGGCTAAATGTGAAGCATTGCACCACACGTG
*
7582087 TATAAAGGCTAAATGTGAAGCATTGTACCACACGTG
1 -ATAAAGGCTAAATGTGAAGCATTGCACCACACGTG
* * *
7582123 ACAAGGGCTAAATGTGAGGCATT
1 ATAAAGGCTAAATGTGAAGCATT
7582146 ATTCAACATG
Statistics
Matches: 49, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
35 20 0.41
36 29 0.59
ACGTcount: A:0.32, C:0.16, G:0.29, T:0.23
Consensus pattern (35 bp):
ATAAAGGCTAAATGTGAAGCATTGCACCACACGTG
Found at i:7582189 original size:71 final size:71
Alignment explanation
Indices: 7582099--7582232 Score: 184
Period size: 71 Copynumber: 1.9 Consensus size: 71
7582089 TAAAGGCTAA
* *
7582099 ATGTGAAGCATTGTACCACACGTGACAAGG-GCTAAATG-TGAGGCATTATT-CAACATGAACAC
1 ATGTGAAGCATCGTACCACACGTGACAAGGATC-AAATGTTGA-GCATTATTAC-ACATGAACAC
7582161 TTGGGTTAG
63 TTGGGTTAG
* *
7582170 ATGTGAGGCATCGTACCACATGTGACAAGGATCAAATGTTGAGCATTATTACACATGAACACT
1 ATGTGAAGCATCGTACCACACGTGACAAGGATCAAATGTTGAGCATTATTACACATGAACACT
7582233 CATACCAAAT
Statistics
Matches: 56, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
71 51 0.91
72 5 0.09
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (71 bp):
ATGTGAAGCATCGTACCACACGTGACAAGGATCAAATGTTGAGCATTATTACACATGAACACTTG
GGTTAG
Found at i:7584446 original size:40 final size:38
Alignment explanation
Indices: 7584355--7584457 Score: 129
Period size: 38 Copynumber: 2.7 Consensus size: 38
7584345 ATACTGCCCG
*
7584355 TGTGCACGATGTGGGGGGATGCACACGATTGCATTAAT
1 TGTGCACGATGTGGAGGGATGCACACGATTGCATTAAT
**
7584393 TGTGCACGATGTGGAGGGATGCACACGA-TG-ACTCTGGCT
1 TGTGCACGATGTGGAGGGATGCACACGATTGCA-T-T-AAT
7584432 ATGTGCACGATGTGGAGGGATGCACA
1 -TGTGCACGATGTGGAGGGATGCACA
7584458 TGAGCTGGAT
Statistics
Matches: 58, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
36 1 0.02
37 3 0.05
38 28 0.48
39 1 0.02
40 25 0.43
ACGTcount: A:0.23, C:0.17, G:0.36, T:0.23
Consensus pattern (38 bp):
TGTGCACGATGTGGAGGGATGCACACGATTGCATTAAT
Found at i:7588945 original size:6 final size:6
Alignment explanation
Indices: 7588912--7588944 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
7588902 TTACTTTTGC
*
7588912 TTTTAG TTTTAG TTTTAG TTTTAG TTTCAG TTT
1 TTTTAG TTTTAG TTTTAG TTTTAG TTTTAG TTT
7588945 CTTTAATTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.15, C:0.03, G:0.15, T:0.67
Consensus pattern (6 bp):
TTTTAG
Found at i:7590447 original size:38 final size:38
Alignment explanation
Indices: 7590351--7590454 Score: 120
Period size: 38 Copynumber: 2.7 Consensus size: 38
7590341 CTCCCTCAGC
* *
7590351 TCATGTGCATCCCTCCATATCGTGCACAAAGTCGGAGTCA
1 TCATGTGCATCCC-CCACATCGTGCAC-AAGTCAGAGTCA
* *
7590391 TCTTGTGCATCTCCCCACATCGTGCAC-AGTCAGTGTCA
1 TCATGTGCATC-CCCCACATCGTGCACAAGTCAGAGTCA
*
7590429 TCATGTACATCCCACCACATCGTGCA
1 TCATGTGCATCCC-CCACATCGTGCA
7590455 GATGGGCACT
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
37 2 0.04
38 30 0.54
40 22 0.39
41 2 0.04
ACGTcount: A:0.23, C:0.34, G:0.17, T:0.26
Consensus pattern (38 bp):
TCATGTGCATCCCCCACATCGTGCACAAGTCAGAGTCA
Found at i:7595768 original size:23 final size:23
Alignment explanation
Indices: 7595738--7595784 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
7595728 GACTGGCTCA
7595738 TGGGCCCAATGGATGTAATCCAC
1 TGGGCCCAATGGATGTAATCCAC
7595761 TGGGCCCAATGGATGTAATCCAC
1 TGGGCCCAATGGATGTAATCCAC
7595784 T
1 T
7595785 AAGCCCAAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.23
Consensus pattern (23 bp):
TGGGCCCAATGGATGTAATCCAC
Found at i:7595790 original size:23 final size:23
Alignment explanation
Indices: 7595741--7595792 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
7595731 TGGCTCATGG
**
7595741 GCCCAATGGATGTAATCCACTGG
1 GCCCAATGGATGTAATCCACTAA
7595764 GCCCAATGGATGTAATCCACTAA
1 GCCCAATGGATGTAATCCACTAA
7595787 GCCCAA
1 GCCCAA
7595793 GCAAGCCTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.31, C:0.29, G:0.21, T:0.19
Consensus pattern (23 bp):
GCCCAATGGATGTAATCCACTAA
Found at i:7597214 original size:38 final size:40
Alignment explanation
Indices: 7597119--7597221 Score: 124
Period size: 38 Copynumber: 2.6 Consensus size: 40
7597109 ACCCAGCTCA
*
7597119 TGTACATCCCCCCACATCGTGCAC-ATGGTTGGCACCATCG
1 TGTACATCCCCCCACATCGTGCACAATAGTTGG-ACCATCG
* *
7597159 TGTGCATCCCCCCACATCGTGCACAATCAG-T-G-CCATTG
1 TGTACATCCCCCCACATCGTGCACAAT-AGTTGGACCATCG
*
7597197 TGTACATCCCCCCACATCATGCACA
1 TGTACATCCCCCCACATCGTGCACA
7597222 CGGGCACTAT
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
38 28 0.50
40 24 0.43
41 3 0.05
42 1 0.02
ACGTcount: A:0.22, C:0.39, G:0.17, T:0.22
Consensus pattern (40 bp):
TGTACATCCCCCCACATCGTGCACAATAGTTGGACCATCG
Found at i:7599249 original size:37 final size:37
Alignment explanation
Indices: 7599199--7599269 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
7599189 TGATGTTGAG
*
7599199 GTGTGCGAGTAGGGAGTGCACACATGACGATGATAGA
1 GTGTGCAAGTAGGGAGTGCACACATGACGATGATAGA
*
7599236 GTGTGCAAGTAGGGAGTGCACACATGATGATGAT
1 GTGTGCAAGTAGGGAGTGCACACATGACGATGAT
7599270 GTATGTATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.30, C:0.13, G:0.37, T:0.21
Consensus pattern (37 bp):
GTGTGCAAGTAGGGAGTGCACACATGACGATGATAGA
Found at i:7599536 original size:22 final size:22
Alignment explanation
Indices: 7599502--7599543 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
7599492 TAGCCGGGAA
*
7599502 TCTCGCTATAGCGAAAATGTAT
1 TCTCGCTACAGCGAAAATGTAT
* *
7599524 TCTCGCTGCAGCGAGAATGT
1 TCTCGCTACAGCGAAAATGT
7599544 TACTGTAGCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (22 bp):
TCTCGCTACAGCGAAAATGTAT
Found at i:7604039 original size:57 final size:57
Alignment explanation
Indices: 7603950--7604057 Score: 162
Period size: 57 Copynumber: 1.9 Consensus size: 57
7603940 TGTTGCCATC
**
7603950 GCTGAAGAAGAAAAGGGCTGCTTGTAGCGAGGGTTGTCCCCTACGAGTGGAACCGCT
1 GCTGAAGAAGAAAAGGGCTGCTTGTAGCGAGGGTCATCCCCTACGAGTGGAACCGCT
* * * *
7604007 GCTGAAGGAGGAAAGGGCTGCTTGTAGTGAGGGTCATCCCCTATGAGTGGA
1 GCTGAAGAAGAAAAGGGCTGCTTGTAGCGAGGGTCATCCCCTACGAGTGGA
7604058 GCTCAACCGT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
57 45 1.00
ACGTcount: A:0.24, C:0.19, G:0.37, T:0.20
Consensus pattern (57 bp):
GCTGAAGAAGAAAAGGGCTGCTTGTAGCGAGGGTCATCCCCTACGAGTGGAACCGCT
Found at i:7610255 original size:40 final size:40
Alignment explanation
Indices: 7610200--7610307 Score: 171
Period size: 40 Copynumber: 2.7 Consensus size: 40
7610190 CTCACCCAGC
*
7610200 TCATGTGCATCCCCCCATATCGTGCACATAGCCGGAGTCA
1 TCATGTGCATCCCCCCACATCGTGCACATAGCCGGAGTCA
* *
7610240 TCATGTGTATCCCCCCACATCGTGCACATAGCCGGTGTCA
1 TCATGTGCATCCCCCCACATCGTGCACATAGCCGGAGTCA
* *
7610280 TCGTGTGCATCCCCCCACATCATGCACA
1 TCATGTGCATCCCCCCACATCGTGCACA
7610308 GTCAGTGCCA
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 62 1.00
ACGTcount: A:0.21, C:0.37, G:0.19, T:0.23
Consensus pattern (40 bp):
TCATGTGCATCCCCCCACATCGTGCACATAGCCGGAGTCA
Found at i:7610338 original size:38 final size:38
Alignment explanation
Indices: 7610207--7610345 Score: 125
Period size: 40 Copynumber: 3.6 Consensus size: 38
7610197 AGCTCATGTG
* * * * * *
7610207 CATCCCCCCATATCGTGCACATAGCCGGAGTCATCATGTG
1 CATCCCCCCACATCGTGCAC--AGCCAGTGCCATCGTGTA
* * * *
7610247 TATCCCCCCACATCGTGCACATAGCCGGTGTCATCGTGTG
1 CATCCCCCCACATCGTGCAC--AGCCAGTGCCATCGTGTA
* * *
7610287 CATCCCCCCACATCATGCACAGTCAGTGCCATTGTGTA
1 CATCCCCCCACATCGTGCACAGCCAGTGCCATCGTGTA
7610325 CATCCCCCCACATCGTGCACA
1 CATCCCCCCACATCGTGCACA
7610346 CGGGCACTAT
Statistics
Matches: 87, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
38 33 0.38
40 54 0.62
ACGTcount: A:0.22, C:0.38, G:0.18, T:0.22
Consensus pattern (38 bp):
CATCCCCCCACATCGTGCACAGCCAGTGCCATCGTGTA
Found at i:7611042 original size:2 final size:2
Alignment explanation
Indices: 7611035--7611073 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
7611025 ACAAGGGAAA
7611035 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
7611074 ACATGTCCAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:7613888 original size:127 final size:127
Alignment explanation
Indices: 7613662--7613918 Score: 424
Period size: 127 Copynumber: 2.0 Consensus size: 127
7613652 AATAGAATTG
* *
7613662 AAATAAATAACTCAAACATTATCAATCATAAGCAAGAAAGAATATTAAAAACTTAGACTATGCAT
1 AAATAAATAACTCAAACATTATCAATCATAAGCAACAAAGAAGATTAAAAACTTAGACTATGCAT
* * *
7613727 TGGGTTCAATTGTGATTCTAGATTAAGAGCTTAGTTAACCATAATGTCTTAAAACATCATTA
66 TGGGTTCAATTGCGATTCTAGATTAAGAACTTAGTTAACCATAATGTCTTAAAACATCATAA
* *
7613789 AAATAAATAACTCAAACATTATCAATCATAAGCAACAAAGACGATTAAAAACTTAGACTATGTAT
1 AAATAAATAACTCAAACATTATCAATCATAAGCAACAAAGAAGATTAAAAACTTAGACTATGCAT
* * *
7613854 TGGGTTCAATTGCGATTCTAGATTGAGAACTTAGTTAATCGTAATGTCTTAAAACATCATAA
66 TGGGTTCAATTGCGATTCTAGATTAAGAACTTAGTTAACCATAATGTCTTAAAACATCATAA
7613916 AAA
1 AAA
7613919 AAAGAGTAAA
Statistics
Matches: 120, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
127 120 1.00
ACGTcount: A:0.44, C:0.14, G:0.12, T:0.30
Consensus pattern (127 bp):
AAATAAATAACTCAAACATTATCAATCATAAGCAACAAAGAAGATTAAAAACTTAGACTATGCAT
TGGGTTCAATTGCGATTCTAGATTAAGAACTTAGTTAACCATAATGTCTTAAAACATCATAA
Found at i:7618838 original size:2 final size:2
Alignment explanation
Indices: 7618831--7618900 Score: 104
Period size: 2 Copynumber: 34.5 Consensus size: 2
7618821 CACCGTAGCT
* * *
7618831 TA TA TA TA TA TA TA TA TA TCC CA TT TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA
7618874 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
7618901 CCCATTTTTA
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
2 61 1.00
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7620109 original size:80 final size:80
Alignment explanation
Indices: 7619829--7620112 Score: 381
Period size: 80 Copynumber: 3.5 Consensus size: 80
7619819 GACATGAACA
* * * * *
7619829 CCATAAGATGTATATGTTAAGTATATCACATACATTATGGACTAAGCATGTAAGTGATTTATAAA
1 CCATGAGATGTATGTGTTAAGTATATCATATACATTATGGGCTAAGCATGTAAGTGATTTATAAG
* *
7619894 GTTATGACATGCATG
66 GTTATGAAATGTATG
* * * * * *
7619909 CCATAAGATGTATGTGTTAAGTATATCATGTACACTATGCGCTAAGCATGTAACTGATTTATGAG
1 CCATGAGATGTATGTGTTAAGTATATCATATACATTATGGGCTAAGCATGTAAGTGATTTATAAG
*
7619974 GTTATGGAATGTATG
66 GTTATGAAATGTATG
* * *
7619989 CCATGAGATGTATGTGTTAAGTATACCATGTACATTATGGGCTAAACATGTAAGTGATTTATAAG
1 CCATGAGATGTATGTGTTAAGTATATCATATACATTATGGGCTAAGCATGTAAGTGATTTATAAG
7620054 GTTATGAAATGTATG
66 GTTATGAAATGTATG
* *
7620069 CTATGAGATGTATGTGTTGAG-ATAGTCATATACATTATGGGCTA
1 CCATGAGATGTATGTGTTAAGTATA-TCATATACATTATGGGCTA
7620113 CGTATGATGA
Statistics
Matches: 179, Mismatches: 24, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
79 3 0.02
80 176 0.98
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.35
Consensus pattern (80 bp):
CCATGAGATGTATGTGTTAAGTATATCATATACATTATGGGCTAAGCATGTAAGTGATTTATAAG
GTTATGAAATGTATG
Found at i:7622816 original size:40 final size:38
Alignment explanation
Indices: 7622724--7622826 Score: 127
Period size: 38 Copynumber: 2.7 Consensus size: 38
7622714 ATATTGCCCG
* *
7622724 TGTGCACGATGTGGGGGGATGTACACGACGGCATTAGA
1 TGTGCACGATGTGGGGGGATGCACACGACGACATTAGA
* * *
7622762 TGTGCATGATGTGGGGGGATGCACACGATGAC-TCTAACTA
1 TGTGCACGATGTGGGGGGATGCACACGACGACAT-T-A-GA
7622802 TGTGCACGATGTGGGGGGATGCACA
1 TGTGCACGATGTGGGGGGATGCACA
7622827 TGAGCTAGGG
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
37 1 0.02
38 29 0.52
39 1 0.02
40 25 0.45
ACGTcount: A:0.23, C:0.17, G:0.38, T:0.22
Consensus pattern (38 bp):
TGTGCACGATGTGGGGGGATGCACACGACGACATTAGA
Found at i:7632634 original size:42 final size:42
Alignment explanation
Indices: 7632506--7632635 Score: 170
Period size: 42 Copynumber: 3.1 Consensus size: 42
7632496 CACATGGTTA
* * * *
7632506 GGTCAGCATTGGCTTATACGCACTCCTACTCGCACATAGACA
1 GGTCATCATTGGCTTATGCGCACTCCTACTTGCACATAGACG
* *
7632548 GATCATCATTGGCTTATGCGCACTCCTACTTGCACATAGTCG
1 GGTCATCATTGGCTTATGCGCACTCCTACTTGCACATAGACG
* * * *
7632590 GGTCATCATCGGCGTATGCGCACTCCTACTTGCATATAGCCG
1 GGTCATCATTGGCTTATGCGCACTCCTACTTGCACATAGACG
7632632 GGTC
1 GGTC
7632636 CACATCAACA
Statistics
Matches: 77, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 77 1.00
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.27
Consensus pattern (42 bp):
GGTCATCATTGGCTTATGCGCACTCCTACTTGCACATAGACG
Found at i:7639901 original size:3 final size:3
Alignment explanation
Indices: 7639882--7639916 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
7639872 TCAAAAAATC
* *
7639882 ATA ATA AAA ATA GTA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
7639917 CTACACTATT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:7651767 original size:68 final size:69
Alignment explanation
Indices: 7651642--7651771 Score: 156
Period size: 67 Copynumber: 1.9 Consensus size: 69
7651632 TGCAATAAAA
* * * ** *
7651642 ATAAAGAGTAAAAGGTATAGAGAAATTTCAAACACTATTTATAAAGATTTGATTTTTCTCTTAGT
1 ATAAAGAGTAAAAGGTATAAAGAAATTACAAACACGATTTATAAAGATTCAAATTTTCTCTTAGT
7651707 GCTT
66 GCTT
* * *
7651711 ATAAAGA-TAAAAGGTATAAAG-AATTACAAACACGATTTGTATAGGTTCAACATTTTCTCTT
1 ATAAAGAGTAAAAGGTATAAAGAAATTACAAACACGATTTATAAAGATTCAA-ATTTTCTCTT
7651772 GATGCTCATG
Statistics
Matches: 51, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
67 22 0.43
68 22 0.43
69 7 0.14
ACGTcount: A:0.41, C:0.10, G:0.14, T:0.35
Consensus pattern (69 bp):
ATAAAGAGTAAAAGGTATAAAGAAATTACAAACACGATTTATAAAGATTCAAATTTTCTCTTAGT
GCTT
Found at i:7662086 original size:11 final size:11
Alignment explanation
Indices: 7662070--7662096 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
7662060 TCATATGGTC
7662070 AATGTATCCTT
1 AATGTATCCTT
7662081 AATGTATCCTT
1 AATGTATCCTT
7662092 AATGT
1 AATGT
7662097 TCATTCTATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.15, G:0.11, T:0.44
Consensus pattern (11 bp):
AATGTATCCTT
Found at i:7678085 original size:35 final size:33
Alignment explanation
Indices: 7678046--7678154 Score: 91
Period size: 35 Copynumber: 3.2 Consensus size: 33
7678036 GTTGATCCCG
7678046 TGAAAAAACATTGTTGTAGGTTGTGGTTGAGCTTT
1 TGAAAAAACATTGTTG-AGGTTGTGGTTGAGC-TT
* * * *
7678081 TGAAAAACCACT-TTG-CGTTTTGGTTGAGC-T
1 TGAAAAAACATTGTTGAGGTTGTGGTTGAGCTT
7678111 TGCAAAAAACCATTG-TGAAAGGTTGTGGTTGAGCCTT
1 TG-AAAAAA-CATTGTTG--AGGTTGTGGTTGAG-CTT
7678148 TGAAAAA
1 TGAAAAA
7678155 TCACTTTGGG
Statistics
Matches: 58, Mismatches: 8, Indels: 15
0.72 0.10 0.19
Matches are distributed among these distances:
30 3 0.05
31 5 0.09
32 17 0.29
34 3 0.05
35 21 0.36
36 6 0.10
37 3 0.05
ACGTcount: A:0.29, C:0.11, G:0.26, T:0.34
Consensus pattern (33 bp):
TGAAAAAACATTGTTGAGGTTGTGGTTGAGCTT
Found at i:7678110 original size:32 final size:32
Alignment explanation
Indices: 7678064--7678174 Score: 98
Period size: 32 Copynumber: 3.4 Consensus size: 32
7678054 CATTGTTGTA
*
7678064 GGTTGTGGTTGAGCTTTTGAAAAACCACTTTG
1 GGTTTTGGTTGAGCTTTTGAAAAACCACTTTG
* ***
7678096 CGTTTTGGTTGAGCTTGCAAAAAACCA-TTGTG
1 GGTTTTGGTTGAGCTTTTGAAAAACCACTT-TG
* * *
7678128 AAAGGTTGTGGTTGAGCCTTTGAAAAATCACTTTG
1 ---GGTTTTGGTTGAGCTTTTGAAAAACCACTTTG
*
7678163 GGCTTTGGTTGA
1 GGTTTTGGTTGA
7678175 TCCCGGTAAA
Statistics
Matches: 60, Mismatches: 14, Indels: 10
0.71 0.17 0.12
Matches are distributed among these distances:
31 2 0.03
32 34 0.57
35 22 0.37
36 2 0.03
ACGTcount: A:0.23, C:0.13, G:0.28, T:0.36
Consensus pattern (32 bp):
GGTTTTGGTTGAGCTTTTGAAAAACCACTTTG
Done.