Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36364294
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2168405 characters in sequence are not A, C, G, or T
File 23 of 91
Found at i:7678138 original size:67 final size:67
Alignment explanation
Indices: 7678032--7678201 Score: 200
Period size: 67 Copynumber: 2.5 Consensus size: 67
7678022 GTTATTGGGT
* * * *
7678032 TTTGGTTGATCCCGTGAAAAAA-CATTGTTG-TAGGTTGTGGTTGAGCTTTTGAAAAACCACTTT
1 TTTGGTTGAGCCCG-CAAAAAACCATTG-TGAAAGGTTGTGGTTGAGCCTTTGAAAAACCACTTT
*
7678095 GCGT
64 GCGC
** * *
7678099 TTTGGTTGAGCTTGCAAAAAACCATTGTGAAAGGTTGTGGTTGAGCCTTTGAAAAATCACTTTGG
1 TTTGGTTGAGCCCGCAAAAAACCATTGTGAAAGGTTGTGGTTGAGCCTTTGAAAAACCACTTTGC
7678164 GC
66 GC
* **
7678166 TTTGGTTGATCCCGGTAAAAACCATTGTGAAAGGTT
1 TTTGGTTGAGCCCGCAAAAAACCATTGTGAAAGGTT
7678202 TTGGCTAAGT
Statistics
Matches: 87, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
66 8 0.09
67 79 0.91
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.35
Consensus pattern (67 bp):
TTTGGTTGAGCCCGCAAAAAACCATTGTGAAAGGTTGTGGTTGAGCCTTTGAAAAACCACTTTGC
GC
Found at i:7678711 original size:17 final size:17
Alignment explanation
Indices: 7678689--7678724 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
7678679 ATGAGGATTT
7678689 CTCCCCCTAAGTGAGTG
1 CTCCCCCTAAGTGAGTG
* *
7678706 CTCCCCCTTAGTGTGTG
1 CTCCCCCTAAGTGAGTG
7678723 CT
1 CT
7678725 TAGTCTACTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.11, C:0.36, G:0.22, T:0.31
Consensus pattern (17 bp):
CTCCCCCTAAGTGAGTG
Found at i:7684603 original size:19 final size:20
Alignment explanation
Indices: 7684581--7684621 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
7684571 ACAAAAGAAA
7684581 ATTTTTA-AAATAAAATAAT
1 ATTTTTATAAATAAAATAAT
*
7684600 A-TTTTATTAATAAAATAAT
1 ATTTTTATAAATAAAATAAT
7684619 ATT
1 ATT
7684622 AAAATATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
18 5 0.26
19 13 0.68
20 1 0.05
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
ATTTTTATAAATAAAATAAT
Found at i:7686339 original size:42 final size:42
Alignment explanation
Indices: 7686276--7686406 Score: 199
Period size: 42 Copynumber: 3.1 Consensus size: 42
7686266 GTGATAATTA
* * *
7686276 TGACCTAGCCATGTGCAGTGTAGGAGTGCACATGAGCTATGC
1 TGACCCAGCCATGTGCGGTGTAGGAGTGCACATGAGCTGTGC
* *
7686318 TGACCCAGCCATGTGCGGTGTAGAAGTGCACACGAGCTGTGC
1 TGACCCAGCCATGTGCGGTGTAGGAGTGCACATGAGCTGTGC
* *
7686360 TGACCCAGCCATGTTCGGTGTATGAGTGCACATGAGCTGTGC
1 TGACCCAGCCATGTGCGGTGTAGGAGTGCACATGAGCTGTGC
7686402 TGACC
1 TGACC
7686407 TGGCTATGTA
Statistics
Matches: 80, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 80 1.00
ACGTcount: A:0.21, C:0.24, G:0.31, T:0.23
Consensus pattern (42 bp):
TGACCCAGCCATGTGCGGTGTAGGAGTGCACATGAGCTGTGC
Found at i:7686430 original size:42 final size:41
Alignment explanation
Indices: 7686276--7686439 Score: 157
Period size: 42 Copynumber: 3.9 Consensus size: 41
7686266 GTGATAATTA
* * * * *
7686276 TGACCTAGCCATGTGCAGTGTAGGAGTGCACATGAGCTATGC
1 TGACCCAGCCATGTACGGTGT-GTAGTGCACATGAGCTGTGC
* * *
7686318 TGACCCAGCCATGTGCGGTGTAGAAGTGCACACGAGCTGTGC
1 TGACCCAGCCATGTACGGTGT-GTAGTGCACATGAGCTGTGC
* *
7686360 TGACCCAGCCATGTTCGGTGTATGAGTGCACATGAGCTGTGC
1 TGACCCAGCCATGTACGGTGTGT-AGTGCACATGAGCTGTGC
** * * *
7686402 TGACCTGGCTATGTACGGAGTGGTAGTGCACATAAGCT
1 TGACCCAGCCATGTACGGTGT-GTAGTGCACATGAGCT
7686440 AAGACAGAGT
Statistics
Matches: 104, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
42 103 0.99
43 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.32, T:0.24
Consensus pattern (41 bp):
TGACCCAGCCATGTACGGTGTGTAGTGCACATGAGCTGTGC
Found at i:7686430 original size:84 final size:84
Alignment explanation
Indices: 7686276--7686433 Score: 208
Period size: 84 Copynumber: 1.9 Consensus size: 84
7686266 GTGATAATTA
* * *
7686276 TGACCTAGCCATGTGCAGTGTAGGAGTGCACATGAGCTATGCTGACCCAGCCATGTGCGGTGTAG
1 TGACCCAGCCATGTGCAGTGTAGGAGTGCACATGAGCTATGCTGACCCAGCCATGTACGGAGTAG
7686341 AAGTGCACACGAGCTGTGC
66 AAGTGCACACGAGCTGTGC
* * * * ** * *
7686360 TGACCCAGCCATGTTCGGTGTATGAGTGCACATGAGCTGTGCTGACCTGGCTATGTACGGAGTGG
1 TGACCCAGCCATGTGCAGTGTAGGAGTGCACATGAGCTATGCTGACCCAGCCATGTACGGAGTAG
*
7686425 TAGTGCACA
66 AAGTGCACA
7686434 TAAGCTAAGA
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
84 62 1.00
ACGTcount: A:0.22, C:0.23, G:0.32, T:0.23
Consensus pattern (84 bp):
TGACCCAGCCATGTGCAGTGTAGGAGTGCACATGAGCTATGCTGACCCAGCCATGTACGGAGTAG
AAGTGCACACGAGCTGTGC
Found at i:7696318 original size:42 final size:42
Alignment explanation
Indices: 7696204--7696326 Score: 133
Period size: 42 Copynumber: 2.9 Consensus size: 42
7696194 GTGTTAATTA
* *
7696204 TGACCTAGCCATGTGCGGTGTAGG-AGTGCACATGAGCTGTGC
1 TGACCCAGCCATGTGCGGTGT-GGTAGTGCACATAAGCTGTGC
* * * * *
7696246 TGACCCAGCCATGTACGATGT-ATGAATGCACATTAGCTGTGC
1 TGACCCAGCCATGTGCGGTGTGGT-AGTGCACATAAGCTGTGC
* *
7696288 TGACCCGGCTATGTGCGGTGTGGTAGTGCACATAAGCTG
1 TGACCCAGCCATGTGCGGTGTGGTAGTGCACATAAGCTG
7696327 AGACAGAGTT
Statistics
Matches: 65, Mismatches: 13, Indels: 6
0.77 0.15 0.07
Matches are distributed among these distances:
42 64 0.98
43 1 0.02
ACGTcount: A:0.21, C:0.22, G:0.32, T:0.25
Consensus pattern (42 bp):
TGACCCAGCCATGTGCGGTGTGGTAGTGCACATAAGCTGTGC
Found at i:7704119 original size:67 final size:67
Alignment explanation
Indices: 7704035--7704214 Score: 233
Period size: 67 Copynumber: 2.7 Consensus size: 67
7704025 GCAAGTTCAG
* *
7704035 CCACAACCTTT-AGCAATGGTTTTTCACGGGATCAATCAAAACCCAAAGTGATTTTTCAAAGGCT
1 CCACAACCTTTCA-CAATGGTTTTTCACGGGATCAACCAAAACCCAAAGTGATTTTTCAAAAGCT
7704099 CAA
65 CAA
**
7704102 CCACAACCTTTCACAATGGTTTTTCAC-AAACTCAACCAAAACCCAAAGTGATTTTTCAAAAGCT
1 CCACAACCTTTCACAATGGTTTTTCACGGGA-TCAACCAAAACCCAAAGTGATTTTTCAAAAGCT
7704166 CAA
65 CAA
* * *
7704169 CCACAACC-TACAATAATAGTTTTT-ACCGGGATCAACCAAAACCCAA
1 CCACAACCTTTC-ACAATGGTTTTTCA-CGGGATCAACCAAAACCCAA
7704215 CAACCAACTT
Statistics
Matches: 99, Mismatches: 9, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
66 4 0.04
67 93 0.94
68 2 0.02
ACGTcount: A:0.38, C:0.27, G:0.11, T:0.24
Consensus pattern (67 bp):
CCACAACCTTTCACAATGGTTTTTCACGGGATCAACCAAAACCCAAAGTGATTTTTCAAAAGCTC
AA
Found at i:7704168 original size:32 final size:32
Alignment explanation
Indices: 7704066--7704176 Score: 118
Period size: 32 Copynumber: 3.4 Consensus size: 32
7704056 TTTCACGGGA
* *
7704066 TCAATCAAAACCCAAAGTGATTTTTCAAAGGC
1 TCAACCAAAACCCAAAGTGATTTTTCAAAAGC
* *
7704098 TCAACCACAACCTTTCACAA-TGGTTTTTCACAAA-C
1 TCAACCAAAACC---CA-AAGTGATTTTTCA-AAAGC
7704133 TCAACCAAAACCCAAAGTGATTTTTCAAAAGC
1 TCAACCAAAACCCAAAGTGATTTTTCAAAAGC
*
7704165 TCAACCACAACC
1 TCAACCAAAACC
7704177 TACAATAATA
Statistics
Matches: 65, Mismatches: 7, Indels: 14
0.76 0.08 0.16
Matches are distributed among these distances:
31 5 0.08
32 33 0.51
35 23 0.35
36 4 0.06
ACGTcount: A:0.40, C:0.29, G:0.08, T:0.23
Consensus pattern (32 bp):
TCAACCAAAACCCAAAGTGATTTTTCAAAAGC
Found at i:7711681 original size:19 final size:19
Alignment explanation
Indices: 7711638--7711683 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
7711628 ATTTTCATAT
*
7711638 ATAAAA-ATAATTTTTTAA
1 ATAAAATATTATTTTTTAA
* *
7711656 AT-TAATATTATTTTTTTA
1 ATAAAATATTATTTTTTAA
7711674 ATAAAATATT
1 ATAAAATATT
7711684 TTTAAATTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
17 2 0.09
18 14 0.64
19 6 0.27
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (19 bp):
ATAAAATATTATTTTTTAA
Found at i:7712171 original size:26 final size:26
Alignment explanation
Indices: 7712114--7712176 Score: 67
Period size: 26 Copynumber: 2.4 Consensus size: 26
7712104 TTTATTAATA
7712114 TATTTATATAAATAATATCAAATATTT
1 TATTTAT-TAAATAATATCAAATATTT
* * *
7712141 GATTTATTAATTAATATATAAAT-TTT
1 TATTTATTAAATAATAT-CAAATATTT
7712167 TATTT-TTAAA
1 TATTTATTAAA
7712177 AAAATAAAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
25 4 0.13
26 16 0.53
27 10 0.33
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (26 bp):
TATTTATTAAATAATATCAAATATTT
Found at i:7717102 original size:26 final size:26
Alignment explanation
Indices: 7717052--7717102 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
7717042 GTTAATTCTA
*
7717052 TTTGATCTAAAATAAAAATATAATAG
1 TTTGATCTAAAATAAAAATAAAATAG
7717078 TTTGAT-TAAATATAATAAA-AAAATA
1 TTTGATCTAAA-ATAA-AAATAAAATA
7717103 AAAACTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
25 4 0.18
26 15 0.68
27 3 0.14
ACGTcount: A:0.57, C:0.02, G:0.06, T:0.35
Consensus pattern (26 bp):
TTTGATCTAAAATAAAAATAAAATAG
Found at i:7718358 original size:25 final size:26
Alignment explanation
Indices: 7718311--7718359 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
7718301 AAACGATGTA
*
7718311 TAACGTTTTAATTAGTAATAGTTAGT
1 TAACGTTTTAATTAGTAAAAGTTAGT
7718337 TAAC-TTTTAATTA-TAAAAAGTTA
1 TAACGTTTTAATTAGT-AAAAGTTA
7718360 TTTTGTTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 1 0.05
25 16 0.76
26 4 0.19
ACGTcount: A:0.41, C:0.04, G:0.10, T:0.45
Consensus pattern (26 bp):
TAACGTTTTAATTAGTAAAAGTTAGT
Found at i:7722706 original size:9 final size:9
Alignment explanation
Indices: 7722692--7722721 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
7722682 TTAAACATGA
7722692 TAACACGAT
1 TAACACGAT
7722701 TAACACGAT
1 TAACACGAT
*
7722710 TAACATGAT
1 TAACACGAT
7722719 TAA
1 TAA
7722722 TTAAACATGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.47, C:0.17, G:0.10, T:0.27
Consensus pattern (9 bp):
TAACACGAT
Found at i:7734353 original size:38 final size:38
Alignment explanation
Indices: 7734291--7734822 Score: 355
Period size: 38 Copynumber: 14.3 Consensus size: 38
7734281 TCAATACTTT
* * * *
7734291 TGCTATGACAAAGAGCA-TCGTCCAAGGATCAAAAATTG
1 TGCTATGATAAAAAGCACTC-TCCAAAGATCAACAATTG
* * *
7734329 TGTTATTATAAAAAGCACTCTCCAAAGATCAATAATTG
1 TGCTATGATAAAAAGCACTCTCCAAAGATCAACAATTG
* * *
7734367 TGCTATGATAAAGAA-CACTCTCTAAAGATTAACAATTT
1 TGCTATGATAAA-AAGCACTCTCCAAAGATCAACAATTG
* * *
7734405 TGCTATTATAAAAAGCACTCTCCAAGGATCAACAATTA
1 TGCTATGATAAAAAGCACTCTCCAAAGATCAACAATTG
* *
7734443 TGCTATGATAAAAAGTACCCTCCAAAGATCAACAATTG
1 TGCTATGATAAAAAGCACTCTCCAAAGATCAACAATTG
** * *
7734481 TGAAAT-ATAAATAGTAC-CTTCCAAAGATCAACAATTG
1 TGCTATGATAAAAAGCACTC-TCCAAAGATCAACAATTG
* * * *
7734518 TGATATGAT-AAAATCAC-CTTGCAAGGATCAACAATTG
1 TGCTATGATAAAAAGCACTC-TCCAAAGATCAACAATTG
* * * *
7734555 TGTTATGATAAAGAGCA-TGCGCCAATGATCAACAATTG
1 TGCTATGATAAAAAGCACT-CTCCAAAGATCAACAATTG
* * *
7734593 TGCTATGATAAAGAGCACCCTCCAAGGATCAACAATTG
1 TGCTATGATAAAAAGCACTCTCCAAAGATCAACAATTG
*
7734631 TG-T-T-AT-----G-AC-CT-CAAACTATCAACAATTG
1 TGCTATGATAAAAAGCACTCTCCAAA-GATCAACAATTG
** * * * *
7734659 CACTATGATAAAGAGCACCCT-AAAAGGATCAACAATTA
1 TGCTATGATAAAAAGCACTCTCCAAA-GATCAACAATTG
* * *** *
7734697 TGCAATGATAAAAAGCACTTTCCTCGGATCAACAATTA
1 TGCTATGATAAAAAGCACTCTCCAAAGATCAACAATTG
** * * * * * * *
7734735 TATTATAATCAAGAGCACCCTTCAAGGATCAACAATCG
1 TGCTATGATAAAAAGCACTCTCCAAAGATCAACAATTG
** * *
7734773 TGCTATGATAAAAAGCACTCTTTAAGGATCAATAATTG
1 TGCTATGATAAAAAGCACTCTCCAAAGATCAACAATTG
*
7734811 TGCTATAATAAA
1 TGCTATGATAAA
7734823 GAGATTAACA
Statistics
Matches: 391, Mismatches: 82, Indels: 42
0.76 0.16 0.08
Matches are distributed among these distances:
27 3 0.01
28 13 0.03
29 3 0.01
30 2 0.01
31 2 0.01
35 2 0.01
36 3 0.01
37 69 0.18
38 289 0.74
39 5 0.01
ACGTcount: A:0.41, C:0.19, G:0.14, T:0.26
Consensus pattern (38 bp):
TGCTATGATAAAAAGCACTCTCCAAAGATCAACAATTG
Found at i:7734603 original size:150 final size:151
Alignment explanation
Indices: 7734291--7734770 Score: 384
Period size: 150 Copynumber: 3.2 Consensus size: 151
7734281 TCAATACTTT
* * * * * * * * * *
7734291 TGCTATGACAAAGAGCATCGTCCAAGGATCAAAAATTGTGTTATTATAAAAAGCA-CTCTCCAAA
1 TGCTATGATAAAAAGCACCCTCCAAAGATCAACAATTGTG-AAATATAAATAGTACCT-TCCAAA
* * * * *
7734355 GATCAATAATTGTGCTATGATAAAGAACACTCTCTAAAGATTAACAATTTTGCTATTATAAAAAG
64 GATCAACAATTGTGATATGATAAAGAACACTCTCTAAAGATCAACAATTGTGCTATGATAAAAAG
*
7734420 CACTCTCCAAGGATCAACAATTA
129 CACTCGCCAAGGATCAACAATTA
*
7734443 TGCTATGATAAAAAGTACCCTCCAAAGATCAACAATTGTGAAATATAAATAGTACCTTCCAAAGA
1 TGCTATGATAAAAAGCACCCTCCAAAGATCAACAATTGTGAAATATAAATAGTACCTTCCAAAGA
* * * *
7734508 TCAACAATTGTGATATGATAAA-ATCAC-CT-TGCAAGGATCAACAATTGTGTTATGATAAAGAG
66 TCAACAATTGTGATATGATAAAGAACACTCTCT--AAAGATCAACAATTGTGCTATGATAAAAAG
* *
7734570 CA-TGCGCCAATGATCAACAATTG
129 CACT-CGCCAAGGATCAACAATTA
* * *
7734593 TGCTATGATAAAGAGCACCCTCCAAGGATCAACAATTGTG---T-T--AT-G-ACC-T-CAAACT
1 TGCTATGATAAAAAGCACCCTCCAAAGATCAACAATTGTGAAATATAAATAGTACCTTCCAAA-G
* * * *
7734648 ATCAACAATTG-CACTATGATAAAGAGCAC-C-CTAAAAGGATCAACAATTATGCAATGATAAAA
65 ATCAACAATTGTGA-TATGATAAAGAACACTCTCT-AAA-GATCAACAATTGTGCTATGATAAAA
** **
7734710 AGCACTTTCCTCGGATCAACAATTA
127 AGCACTCGCCAAGGATCAACAATTA
** * * * * *
7734735 TATTATAATCAAGAGCACCCTTCAAGGATCAACAAT
1 TGCTATGATAAAAAGCACCCTCCAAAGATCAACAAT
7734771 CGTGCTATGA
Statistics
Matches: 272, Mismatches: 46, Indels: 30
0.78 0.13 0.09
Matches are distributed among these distances:
140 5 0.02
141 23 0.08
142 78 0.29
143 2 0.01
144 2 0.01
146 1 0.00
147 1 0.00
148 1 0.00
149 3 0.01
150 83 0.31
151 38 0.14
152 35 0.13
ACGTcount: A:0.41, C:0.19, G:0.14, T:0.26
Consensus pattern (151 bp):
TGCTATGATAAAAAGCACCCTCCAAAGATCAACAATTGTGAAATATAAATAGTACCTTCCAAAGA
TCAACAATTGTGATATGATAAAGAACACTCTCTAAAGATCAACAATTGTGCTATGATAAAAAGCA
CTCGCCAAGGATCAACAATTA
Found at i:7734892 original size:140 final size:139
Alignment explanation
Indices: 7734681--7734951 Score: 330
Period size: 140 Copynumber: 1.9 Consensus size: 139
7734671 GAGCACCCTA
* ** * *
7734681 AAAGGATCAACAATTATGCAATGATAAAAAGCACTTTCCTCGGATCAACAATTATATTATAATCA
1 AAAGGATCAACAATTATGCAATGATAAAAAGAACTTTCCAAGGATCAACAATTATACTATAACCA
* * * * *
7734746 AGAGCACCCTTC-AAGGATCAACAATCGTGCTATGATAAAAAGCACTCTTTAAGGATCAATAATT
66 AAAGCA-CCTTCTAAGGATCAACAATCGTGCTATGATAAAAAGCACCCTCTAAGGATAAAAAATT
7734810 GTGCTATAAT
130 GTGCTATAAT
* ** * *
7734820 AAAGAGATTAACAATTATGTTATGATAAAAAGAACTTTCCAAGGATCAACAATTGTGCTAT-ACC
1 AAAG-GATCAACAATTATGCAATGATAAAAAGAACTTTCCAAGGATCAACAATTATACTATAACC
* * * *
7734884 GAAAAGCACCTTCTAATGATCAACAATTGTGTTATGATAAAGAGCACCCTCTAAGGATAAAAAAT
65 -AAAAGCACCTTCTAAGGATCAACAATCGTGCTATGATAAAAAGCACCCTCTAAGGATAAAAAAT
7734949 TGT
129 TGT
7734952 TGTTAATATA
Statistics
Matches: 110, Mismatches: 19, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
139 11 0.10
140 99 0.90
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.27
Consensus pattern (139 bp):
AAAGGATCAACAATTATGCAATGATAAAAAGAACTTTCCAAGGATCAACAATTATACTATAACCA
AAAGCACCTTCTAAGGATCAACAATCGTGCTATGATAAAAAGCACCCTCTAAGGATAAAAAATTG
TGCTATAAT
Found at i:7734930 original size:38 final size:37
Alignment explanation
Indices: 7734829--7734956 Score: 114
Period size: 38 Copynumber: 3.4 Consensus size: 37
7734819 TAAAGAGATT
* * * *
7734829 AACAATTATGTTATGATAAAAAGAACTTTCCAAGGATC
1 AACAATTGTGTTATGAT-AAAAGCACCTTCTAAGGATC
* * *
7734867 AACAATTGTGCTAT-ACCGAAAAGCACCTTCTAATGATC
1 AACAATTGTGTTATGA--TAAAAGCACCTTCTAAGGATC
* *
7734905 AACAATTGTGTTATGATAAAGAGCACCCTCTAAGGATA
1 AACAATTGTGTTATGATAAA-AGCACCTTCTAAGGATC
*
7734943 AAAAATTGTTGTTA
1 AACAATTG-TGTTA
7734957 ATATAGAAGT
Statistics
Matches: 72, Mismatches: 13, Indels: 9
0.77 0.14 0.10
Matches are distributed among these distances:
37 4 0.06
38 62 0.86
39 6 0.08
ACGTcount: A:0.41, C:0.16, G:0.15, T:0.29
Consensus pattern (37 bp):
AACAATTGTGTTATGATAAAAGCACCTTCTAAGGATC
Found at i:7735422 original size:53 final size:55
Alignment explanation
Indices: 7735342--7735445 Score: 131
Period size: 53 Copynumber: 1.9 Consensus size: 55
7735332 CAAGGAATTT
* * * * *
7735342 CAATCCACTATAAAGGATTTTTTCTTTTTAATAGGATAAATCGATAACCCTCACA
1 CAATCCACTATAAAGGATTCTTGCTTTTTAATAAGATAAAGCAATAACCCTCACA
* *
7735397 CAATCCAC-A-AAGGGATTCTTGCTTTTTAATAAGATCAAGCAATAACCCT
1 CAATCCACTATAAAGGATTCTTGCTTTTTAATAAGATAAAGCAATAACCCT
7735446 TACAACGACT
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
53 33 0.79
54 1 0.02
55 8 0.19
ACGTcount: A:0.37, C:0.21, G:0.11, T:0.32
Consensus pattern (55 bp):
CAATCCACTATAAAGGATTCTTGCTTTTTAATAAGATAAAGCAATAACCCTCACA
Found at i:7736620 original size:38 final size:37
Alignment explanation
Indices: 7736544--7736934 Score: 340
Period size: 38 Copynumber: 10.3 Consensus size: 37
7736534 ACTTAAGGCT
* * * **
7736544 AACAATTATGCTAAGATAAAGAGCACTCTCCAAAGATC
1 AACAATTGTGCTATGATAAAG-GCACCCTTTAAAGATC
* *
7736582 AATAATTGTGCTATGATAAAGGTCACCCTTTAACGATC
1 AACAATTGTGCTATGATAAAGG-CACCCTTTAAAGATC
* *
7736620 AACAATTGTGCTAAGATAAAGAGCACCCTCTAAAGATC
1 AACAATTGTGCTATGATAAAG-GCACCCTTTAAAGATC
* * * *
7736658 ATA-AATTATACTAAGATAAAGAGCACCCTCTAAAGATC
1 A-ACAATTGTGCTATGATAAAG-GCACCCTTTAAAGATC
* * * * *
7736696 AACAGTTATGCTATGATAACA--AACGCCTTACAAAGATG
1 AACAATTGTGCTATGATAA-AGGCAC-CCTT-TAAAGATC
* * * * *
7736734 AGCAATTGTACTATGATAAAGAGTACCCTTAAAATATC
1 AACAATTGTGCTATGATAAAG-GCACCCTTTAAAGATC
* * *
7736772 AACAATTGTACTATGATAAAAAGCACCTTTTAAAGATC
1 AACAATTGTGCTATGAT-AAAGGCACCCTTTAAAGATC
* * * *
7736810 AACAA-TCTACTATGATAAAGAGTACCCTTCAAAGATC
1 AACAATTGTGCTATGATAAAG-GCACCCTTTAAAGATC
*
7736847 AACAATTGTGCTATGATAAAGGGCACCCTTAAAAGATC
1 AACAATTGTGCTATGATAAA-GGCACCCTTTAAAGATC
* *
7736885 AATAATTGTGCTATGATAAAAGGCACCCTTAAAAGATC
1 AACAATTGTGCTATGAT-AAAGGCACCCTTTAAAGATC
7736923 AACAATTGTGCT
1 AACAATTGTGCT
7736935 GTAAAACCCG
Statistics
Matches: 293, Mismatches: 45, Indels: 30
0.80 0.12 0.08
Matches are distributed among these distances:
36 5 0.02
37 34 0.12
38 238 0.81
39 14 0.05
40 2 0.01
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.26
Consensus pattern (37 bp):
AACAATTGTGCTATGATAAAGGCACCCTTTAAAGATC
Found at i:7736676 original size:76 final size:77
Alignment explanation
Indices: 7736544--7736934 Score: 399
Period size: 76 Copynumber: 5.2 Consensus size: 77
7736534 ACTTAAGGCT
* * * * *
7736544 AACAATTATGCTAAGATAAAGAGCACTCTCCAAAGATCAATAATTGTGCTATGATAAAG-GTCAC
1 AACAATTGTGCTATGATAAAGAGCACCCTCTAAAGATCAATAATTGTACTATGATAAAGAGTCAC
* *
7736608 CCTTTAACGATC
66 CCTTAAAAGATC
* * *
7736620 AACAATTGTGCTAAGATAAAGAGCACCCTCTAAAGATC-ATAAATTATACTAAGATAAAGAG-CA
1 AACAATTGTGCTATGATAAAGAGCACCCTCTAAAGATCAAT-AATTGTACTATGATAAAGAGTCA
7736683 CCCTCT-AAAGATC
65 CCCT-TAAAAGATC
* * * * * * **
7736696 AACAGTTATGCTATGATAACA-AACGCCTTAC-AAAGATGAGCAATTGTACTATGATAAAGAGT-
1 AACAATTGTGCTATGATAA-AGAGCACCCT-CTAAAGATCAATAATTGTACTATGATAAAGAGTC
*
7736758 ACCCTTAAAATATC
64 ACCCTTAAAAGATC
* * * * * *
7736772 AACAATTGTACTATGATAAAAAGCACCTTTTAAAGATCAACAA-TCTACTATGATAAAGAGT-AC
1 AACAATTGTGCTATGATAAAGAGCACCCTCTAAAGATCAATAATTGTACTATGATAAAGAGTCAC
*
7736835 CCTTCAAAGATC
66 CCTTAAAAGATC
* * *
7736847 AACAATTGTGCTATGATAAAGGGCACCCT-TAAAAGATCAATAATTGTGCTATGATAAA-AGGCA
1 AACAATTGTGCTATGATAAAGAGCACCCTCT-AAAGATCAATAATTGTACTATGATAAAGAGTCA
7736910 CCCTTAAAAGATC
65 CCCTTAAAAGATC
7736923 AACAATTGTGCT
1 AACAATTGTGCT
7736935 GTAAAACCCG
Statistics
Matches: 263, Mismatches: 39, Indels: 26
0.80 0.12 0.08
Matches are distributed among these distances:
74 1 0.00
75 71 0.27
76 187 0.71
77 4 0.02
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.26
Consensus pattern (77 bp):
AACAATTGTGCTATGATAAAGAGCACCCTCTAAAGATCAATAATTGTACTATGATAAAGAGTCAC
CCTTAAAAGATC
Found at i:7736752 original size:114 final size:112
Alignment explanation
Indices: 7736544--7736934 Score: 391
Period size: 114 Copynumber: 3.4 Consensus size: 112
7736534 ACTTAAGGCT
* * * * * *
7736544 AACAATTATGCTAAGATAAAGAGCACTCTCCAAAGATCAATAATTGTGCTATGATAAAGGTCACC
1 AACAATTATACTAAGATAAAGAGCACCCTCTAAAGATCAACAATTATGCTATGATAAA-G-AACC
* * *
7736609 CTTTAACGATCAACAATTGTGCTAAGATAAAGAGCACCCTCT-AAAGATC
64 CTTCAAAGATCAACAATTGTGCTATGATAAAGAGCACCCT-TAAAAGATC
*
7736658 ATA-AATTATACTAAGATAAAGAGCACCCTCTAAAGATCAACAGTTATGCTATGATAACA-AACG
1 A-ACAATTATACTAAGATAAAGAGCACCCTCTAAAGATCAACAATTATGCTATGATAA-AGAAC-
* * * * *
7736721 CCTTACAAAGATGAGCAATTGTACTATGATAAAGAGTACCCTTAAAATATC
63 CCTT-CAAAGATCAACAATTGTGCTATGATAAAGAGCACCCTTAAAAGATC
* * * * *
7736772 AACAATTGTACTATGATAAAAAGCACCTTTTAAAGATCAACAATCTA--CTATGATAAAGAGTAC
1 AACAATTATACTAAGATAAAGAGCACCCTCTAAAGATCAACAAT-TATGCTATGATAAAGA--AC
*
7736835 CCTTCAAAGATCAACAATTGTGCTATGATAAAGGGCACCCTTAAAAGATC
63 CCTTCAAAGATCAACAATTGTGCTATGATAAAGAGCACCCTTAAAAGATC
* * * * *
7736885 AATAATTGTGCTATGATAAA-AGGCACCCT-TAAAAGATCAACAATTGTGCT
1 AACAATTATACTAAGATAAAGA-GCACCCTCT-AAAGATCAACAATTATGCT
7736935 GTAAAACCCG
Statistics
Matches: 232, Mismatches: 31, Indels: 28
0.80 0.11 0.10
Matches are distributed among these distances:
112 6 0.03
113 93 0.40
114 127 0.55
115 6 0.03
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.26
Consensus pattern (112 bp):
AACAATTATACTAAGATAAAGAGCACCCTCTAAAGATCAACAATTATGCTATGATAAAGAACCCT
TCAAAGATCAACAATTGTGCTATGATAAAGAGCACCCTTAAAAGATC
Found at i:7739973 original size:38 final size:38
Alignment explanation
Indices: 7739922--7740016 Score: 138
Period size: 38 Copynumber: 2.5 Consensus size: 38
7739912 GGTTGTGACA
* *
7739922 TGTGCTATGATAAAAGGCACCTTTAAAAGATCAACAAT
1 TGTGCTATGATAAAAAGCAACTTTAAAAGATCAACAAT
*
7739960 TGTGCTATGATAAAAAGCAACTTTCAAAGATCAACAAT
1 TGTGCTATGATAAAAAGCAACTTTAAAAGATCAACAAT
*
7739998 TGTGCAATGA-AAAATAGCA
1 TGTGCTATGATAAAA-AGCA
7740017 CCCTCTAAGG
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
37 4 0.08
38 48 0.92
ACGTcount: A:0.44, C:0.15, G:0.16, T:0.25
Consensus pattern (38 bp):
TGTGCTATGATAAAAAGCAACTTTAAAAGATCAACAAT
Found at i:7740030 original size:38 final size:38
Alignment explanation
Indices: 7739922--7740034 Score: 113
Period size: 38 Copynumber: 3.0 Consensus size: 38
7739912 GGTTGTGACA
* * * * *
7739922 TGTGCTATGATAAAAGGCACCTTTAAAAGATCAACAAT
1 TGTGCAATGATAAAAAGCAACTCTCAAAGATCAACAAT
* *
7739960 TGTGCTATGATAAAAAGCAACTTTCAAAGATCAACAAT
1 TGTGCAATGATAAAAAGCAACTCTCAAAGATCAACAAT
* *
7739998 TGTGCAATGA-AAAATAGC-ACCCTCTAAGGATCAACAA
1 TGTGCAATGATAAAA-AGCAACTCTC-AAAGATCAACAA
7740035 GCACCCTCAA
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
37 8 0.12
38 58 0.88
ACGTcount: A:0.43, C:0.18, G:0.15, T:0.24
Consensus pattern (38 bp):
TGTGCAATGATAAAAAGCAACTCTCAAAGATCAACAAT
Found at i:7740039 original size:21 final size:21
Alignment explanation
Indices: 7740013--7740055 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
7740003 AATGAAAAAT
*
7740013 AGCACCCTCTAA-GGATCAACA
1 AGCACCCTC-AATAGATCAACA
7740034 AGCACCCTCAATAGATCAACA
1 AGCACCCTCAATAGATCAACA
7740055 A
1 A
7740056 TTGTGTTATG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 2 0.10
21 18 0.90
ACGTcount: A:0.42, C:0.33, G:0.12, T:0.14
Consensus pattern (21 bp):
AGCACCCTCAATAGATCAACA
Found at i:7740072 original size:59 final size:58
Alignment explanation
Indices: 7739983--7740093 Score: 150
Period size: 59 Copynumber: 1.9 Consensus size: 58
7739973 AAAGCAACTT
* * *
7739983 TCAAAGATCAACAATTGTGCAATGAAAAATAGCACCCTCTAAGGATCAACAAGCACCC
1 TCAAAGATCAACAATTGTGCAATGAAAAATAACACCCTCCAAGAATCAACAAGCACCC
** * *
7740041 TCAATAGATCAACAATTGTGTTATGATAAATAACACTCTCCAAGAATCAACAA
1 TCAA-AGATCAACAATTGTGCAATGAAAAATAACACCCTCCAAGAATCAACAA
7740094 TTGTGCTATG
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
58 4 0.09
59 41 0.91
ACGTcount: A:0.44, C:0.23, G:0.12, T:0.22
Consensus pattern (58 bp):
TCAAAGATCAACAATTGTGCAATGAAAAATAACACCCTCCAAGAATCAACAAGCACCC
Found at i:7740131 original size:38 final size:38
Alignment explanation
Indices: 7740087--7740377 Score: 187
Period size: 38 Copynumber: 7.7 Consensus size: 38
7740077 TCTCCAAGAA
* * *
7740087 TCAACAATTGTGCTATGATAAAGAGCTCCTTTTAACGG
1 TCAACAATTGTGCTATGATAAAGAGCACCTTCTAAAGG
* * * * *
7740125 TTAACAATTATGCTATGATAAAGAACACCCTCT-ATGG
1 TCAACAATTGTGCTATGATAAAGAGCACCTTCTAAAGG
* * * * * *
7740162 ATTAA-ACATTGTGCGAAGATAAGGAGCACCTTATAAAGA
1 -TCAACA-ATTGTGCTATGATAAAGAGCACCTTCTAAAGG
* * * *
7740201 TCAACAATTATGCTATGATAAAGAGTACCTTCCAAAGA
1 TCAACAATTGTGCTATGATAAAGAGCACCTTCTAAAGG
* * * * * ** *
7740239 TGAACAATTATGTTTTGATAAAAAGGGCCTT-TCAAGG
1 TCAACAATTGTGCTATGATAAAGAGCACCTTCTAAAGG
* * * * * **
7740276 ATTAACAATTGTGTTATGATAAAGAGCTCCCTCCAAATA
1 -TCAACAATTGTGCTATGATAAAGAGCACCTTCTAAAGG
* *
7740315 TCAACAATTGTGCTATGATAAAAAGCACCCT-TAAAGG
1 TCAACAATTGTGCTATGATAAAGAGCACCTTCTAAAGG
*
7740352 ATCAACAATTGTGATATGAT-AAGAGC
1 -TCAACAATTGTGCTATGATAAAGAGC
7740378 GCTCACTAAG
Statistics
Matches: 193, Mismatches: 53, Indels: 15
0.74 0.20 0.06
Matches are distributed among these distances:
37 15 0.08
38 173 0.90
39 5 0.03
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (38 bp):
TCAACAATTGTGCTATGATAAAGAGCACCTTCTAAAGG
Found at i:7740259 original size:76 final size:76
Alignment explanation
Indices: 7740047--7740377 Score: 235
Period size: 76 Copynumber: 4.4 Consensus size: 76
7740037 ACCCTCAATA
* * * * * * *
7740047 GATCAACAATTGTGTTATGATAAATAACACTCTCC-AAGAATCAACAATTGTGCTATGATAAAGA
1 GATCAACAATTGTGATATGATAAAGAGCTCCCTCCAAAG-ATCAACAATTATGCTATGATAAAAA
* *
7740111 GCTCCTTTTAACG
65 GCACCTTATAA-G
* * * * * * ** * * * * **
7740124 G-TTAACAATTATGCTATGATAAAGAACACCCTCTATGGATTAA-ACATTGTGCGAAGATAAGGA
1 GATCAACAATTGTGATATGATAAAGAGCTCCCTCCAAAGATCAACA-ATTATGCTATGATAAAAA
*
7740187 GCACCTTATAAA
65 GCACCTTATAAG
* * * * * *
7740199 GATCAACAATTATGCTATGATAAAGAG-TACCTTCCAAAGATGAACAATTATGTTTTGATAAAAA
1 GATCAACAATTGTGATATGATAAAGAGCT-CCCTCCAAAGATCAACAATTATGCTATGATAAAAA
**
7740263 GGGCCTT-TCAAG
65 GCACCTTAT-AAG
* * * *
7740275 GATTAACAATTGTGTTATGATAAAGAGCTCCCTCCAAATATCAACAATTGTGCTATGATAAAAAG
1 GATCAACAATTGTGATATGATAAAGAGCTCCCTCCAAAGATCAACAATTATGCTATGATAAAAAG
7740340 CACCCTTA-AAG
66 CA-CCTTATAAG
7740351 GATCAACAATTGTGATATGAT-AAGAGC
1 GATCAACAATTGTGATATGATAAAGAGC
7740378 GCTCACTAAG
Statistics
Matches: 199, Mismatches: 46, Indels: 20
0.75 0.17 0.08
Matches are distributed among these distances:
75 9 0.05
76 182 0.91
77 8 0.04
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.28
Consensus pattern (76 bp):
GATCAACAATTGTGATATGATAAAGAGCTCCCTCCAAAGATCAACAATTATGCTATGATAAAAAG
CACCTTATAAG
Found at i:7740359 original size:114 final size:113
Alignment explanation
Indices: 7740051--7740373 Score: 287
Period size: 114 Copynumber: 2.8 Consensus size: 113
7740041 TCAATAGATC
* * * *
7740051 AACAATTGTGTTATGATAAATAACACTCTCCAAGAATCAACAATTGTGCTATGATAAAGAGCTCC
1 AACAATTGTGTTATGATAAAGAGCACCCTCCAA-AATCAACAATTGTGCTATGATAAAGAGCACC
* * * *
7740116 TTTTAACGG-TTAACAATTATGCTATGATAAAGAACACCCTCTATGGATT
65 -CTTAAAGGATCAACAATTATGCTATGATAAAGAACACCCTCTAAGGATT
** * * * ** * *
7740165 AA-ACATTGTGCGAAGATAAGGAGCACCTTATAAAGATCAACAATTATGCTATGATAAAGAGTA-
1 AACA-ATTGTGTTATGATAAAGAGCACCCTCCAAA-ATCAACAATTGTGCTATGATAAAGAGCAC
* * * *** *
7740228 CCTTCCAAA-GATGAACAATTATGTTTTGATAAA-AAGGGCCTTTCAAGGATT
64 CCTT--AAAGGATCAACAATTATGCTATGATAAAGAACACCCTCT-AAGGATT
* *
7740279 AACAATTGTGTTATGATAAAGAGCTCCCTCCAAATATCAACAATTGTGCTATGATAAAAAGCACC
1 AACAATTGTGTTATGATAAAGAGCACCCTCCAAA-ATCAACAATTGTGCTATGATAAAGAGCACC
* *
7740344 CTTAAAGGATCAACAATTGTGATATGATAA
65 CTTAAAGGATCAACAATTATGCTATGATAA
7740374 GAGCGCTCAC
Statistics
Matches: 161, Mismatches: 39, Indels: 18
0.74 0.18 0.08
Matches are distributed among these distances:
112 2 0.01
113 13 0.08
114 141 0.88
115 5 0.03
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (113 bp):
AACAATTGTGTTATGATAAAGAGCACCCTCCAAAATCAACAATTGTGCTATGATAAAGAGCACCC
TTAAAGGATCAACAATTATGCTATGATAAAGAACACCCTCTAAGGATT
Found at i:7741214 original size:33 final size:33
Alignment explanation
Indices: 7741177--7741243 Score: 82
Period size: 33 Copynumber: 2.0 Consensus size: 33
7741167 ATAGCAATTA
7741177 CAAAATAACTCCGCT-AAGATTATAATTCTATTG
1 CAAAAT-ACTCCGCTCAAGATTATAATTCTATTG
* ** *
7741210 CAAAATACTTCTTTCAAGATTATAATTCTTTTG
1 CAAAATACTCCGCTCAAGATTATAATTCTATTG
7741243 C
1 C
7741244 TTGTTGGCAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
32 5 0.17
33 24 0.83
ACGTcount: A:0.36, C:0.18, G:0.07, T:0.39
Consensus pattern (33 bp):
CAAAATACTCCGCTCAAGATTATAATTCTATTG
Found at i:7741240 original size:17 final size:18
Alignment explanation
Indices: 7741192--7741240 Score: 52
Period size: 17 Copynumber: 2.9 Consensus size: 18
7741182 TAACTCCGCT
7741192 AAGATTATAATTCTATTGC
1 AAGATTATAATTCT-TTGC
*
7741211 AA-A--ATACTTCTTT-C
1 AAGATTATAATTCTTTGC
7741225 AAGATTATAATTCTTT
1 AAGATTATAATTCTTT
7741241 TGCTTGTTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 8
0.71 0.06 0.23
Matches are distributed among these distances:
14 3 0.12
15 3 0.12
16 7 0.28
17 9 0.36
18 1 0.04
19 2 0.08
ACGTcount: A:0.37, C:0.12, G:0.06, T:0.45
Consensus pattern (18 bp):
AAGATTATAATTCTTTGC
Found at i:7741849 original size:23 final size:23
Alignment explanation
Indices: 7741818--7741862 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
7741808 CTTTCATCTT
7741818 TTTAATTGTTCTTTCAAGTTATC
1 TTTAATTGTTCTTTCAAGTTATC
* *
7741841 TTTATTTGTTCTTTTAAGTTAT
1 TTTAATTGTTCTTTCAAGTTAT
7741863 GTTTTCATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.20, C:0.09, G:0.09, T:0.62
Consensus pattern (23 bp):
TTTAATTGTTCTTTCAAGTTATC
Found at i:7757337 original size:23 final size:23
Alignment explanation
Indices: 7757310--7757354 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
7757300 TTGTTTCTTC
7757310 TCTTTAATTGTTCTTTGAAGTTA
1 TCTTTAATTGTTCTTTGAAGTTA
* * *
7757333 TCTTTATTTGTTTTTTTAAGTT
1 TCTTTAATTGTTCTTTGAAGTT
7757355 TTATTTTCAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.18, C:0.07, G:0.11, T:0.64
Consensus pattern (23 bp):
TCTTTAATTGTTCTTTGAAGTTA
Found at i:7762329 original size:2 final size:2
Alignment explanation
Indices: 7762322--7762368 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
7762312 TACCTTTAAA
7762322 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7762364 AT AT A
1 AT AT A
7762369 NNNNNNNNNN
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7763487 original size:15 final size:15
Alignment explanation
Indices: 7763448--7763489 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
7763438 TAAATTTCAC
*
7763448 TTAATAATTTAAAAA
1 TTAATATTTTAAAAA
7763463 TTAATATTTTAAAATA
1 TTAATATTTTAAAA-A
*
7763479 TTAATTTTTTA
1 TTAATATTTTA
7763490 TTTATAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 13 0.54
16 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TTAATATTTTAAAAA
Found at i:7763945 original size:20 final size:21
Alignment explanation
Indices: 7763920--7763962 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
7763910 ATTTGACTCA
*
7763920 TTTATTTATT-TATTTATATT
1 TTTATTTATTATATTAATATT
7763940 TTTATTTATTATATTAATATT
1 TTTATTTATTATATTAATATT
7763961 TT
1 TT
7763963 AATAATTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (21 bp):
TTTATTTATTATATTAATATT
Found at i:7763953 original size:15 final size:16
Alignment explanation
Indices: 7763924--7763954 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7763914 GACTCATTTA
7763924 TTTATTTATTTATATT
1 TTTATTTATTTATATT
7763940 TTTATTTA-TTATATT
1 TTTATTTATTTATATT
7763955 AATATTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (16 bp):
TTTATTTATTTATATT
Found at i:7771331 original size:79 final size:79
Alignment explanation
Indices: 7771200--7771353 Score: 236
Period size: 79 Copynumber: 1.9 Consensus size: 79
7771190 CTTACATTTG
* * * *
7771200 TTTGGAAGATGGAAAATTAATACTGGATGTAAAATATCTTACGAGTCAACAAGGTTAACCATAGA
1 TTTGGAAGACGAAAAATTAATACTGGATGTAAAATATCTTACGAGTCAACAAGCTTAACCACAGA
7771265 AACTGTCTTACGGC
66 AACTGTCTTACGGC
* * *
7771279 TTTGGAAGACGAAAAATTAATTCTGGATGTAAAATATTTTATGAGTCAACAAGCTTAACCACAGA
1 TTTGGAAGACGAAAAATTAATACTGGATGTAAAATATCTTACGAGTCAACAAGCTTAACCACAGA
*
7771344 AATTGTCTTA
66 AACTGTCTTA
7771354 TGCCTTTCAA
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
79 67 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (79 bp):
TTTGGAAGACGAAAAATTAATACTGGATGTAAAATATCTTACGAGTCAACAAGCTTAACCACAGA
AACTGTCTTACGGC
Found at i:7771700 original size:74 final size:74
Alignment explanation
Indices: 7771609--7771746 Score: 231
Period size: 74 Copynumber: 1.9 Consensus size: 74
7771599 ATGGAATAAT
*
7771609 TCTTACTAATAACTATAATAAAAAATATTTCAATGATCATCATTTGATGAATACACACTTATAAT
1 TCTTACTAATAACTATAATAAAAAATATTTCAATGATCATCATTTAATGAATACACACTTATAAT
7771674 AGGTTTAAA
66 AGGTTTAAA
* * * *
7771683 TCTTACTAATAATTATAATAAAAAATATTTCAATGATCGTCATTTAATGAATACATATTTATAA
1 TCTTACTAATAACTATAATAAAAAATATTTCAATGATCATCATTTAATGAATACACACTTATAA
7771747 GTATAAGTTT
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
74 59 1.00
ACGTcount: A:0.45, C:0.11, G:0.06, T:0.38
Consensus pattern (74 bp):
TCTTACTAATAACTATAATAAAAAATATTTCAATGATCATCATTTAATGAATACACACTTATAAT
AGGTTTAAA
Found at i:7772577 original size:2 final size:2
Alignment explanation
Indices: 7772572--7772604 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
7772562 TATATATGCA
*
7772572 TG TG TG TG TG TG TG TG TG TG TG TG TG TC TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
7772605 TGTATGTAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.03, G:0.45, T:0.52
Consensus pattern (2 bp):
TG
Found at i:7779553 original size:16 final size:15
Alignment explanation
Indices: 7779515--7779557 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 15
7779505 AAACGACTTG
*
7779515 AACCTGAATTG-ACC
1 AACCTGAAATGAACC
7779529 AAGCCTGAAATGAACC
1 AA-CCTGAAATGAACC
7779545 TAACCTGAAATGA
1 -AACCTGAAATGA
7779558 TCTGAATTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
14 2 0.08
15 8 0.32
16 13 0.52
17 2 0.08
ACGTcount: A:0.42, C:0.23, G:0.16, T:0.19
Consensus pattern (15 bp):
AACCTGAAATGAACC
Found at i:7783258 original size:31 final size:31
Alignment explanation
Indices: 7783223--7783304 Score: 103
Period size: 31 Copynumber: 2.6 Consensus size: 31
7783213 CACAAGAGTG
* *
7783223 ATGCATGACGTGTCACGACATTTGAC-TTGAT
1 ATGCATGGCGTGTCACAACATTTGACGTT-AT
* *
7783254 ATGCATGGCATGTTACAACATTTGACGTTAT
1 ATGCATGGCGTGTCACAACATTTGACGTTAT
*
7783285 ATGCATGGCGTGTAACAACA
1 ATGCATGGCGTGTCACAACA
7783305 CGACAGACAA
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
31 42 0.95
32 2 0.05
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.30
Consensus pattern (31 bp):
ATGCATGGCGTGTCACAACATTTGACGTTAT
Found at i:7786466 original size:31 final size:31
Alignment explanation
Indices: 7786421--7786562 Score: 176
Period size: 31 Copynumber: 4.6 Consensus size: 31
7786411 TCTGCTAAAG
**
7786421 GTTATGACACGCCATGCATAACAAGTTAAAC
1 GTTATGACACGCCATGCATAACAAGCAAAAC
* * * *
7786452 TTTGTGACATGCCATGCATAACAAGCAAAAG
1 GTTATGACACGCCATGCATAACAAGCAAAAC
*
7786483 GTTATGACACGCCATGCATAACAAGCAAAAG
1 GTTATGACACGCCATGCATAACAAGCAAAAC
* **
7786514 GTTATAACACGCCATGCATAACAAGTTAAAC
1 GTTATGACACGCCATGCATAACAAGCAAAAC
* *
7786545 GTTGTGACACACCATGCA
1 GTTATGACACGCCATGCA
7786563 GTATCGTGGA
Statistics
Matches: 95, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 95 1.00
ACGTcount: A:0.39, C:0.23, G:0.18, T:0.21
Consensus pattern (31 bp):
GTTATGACACGCCATGCATAACAAGCAAAAC
Found at i:7786771 original size:31 final size:31
Alignment explanation
Indices: 7786683--7786759 Score: 145
Period size: 31 Copynumber: 2.5 Consensus size: 31
7786673 CCCAATTGTT
*
7786683 CTGACATGCTGAGTGGAAGCAGATTTATGGG
1 CTGACATGCTGAGTGCAAGCAGATTTATGGG
7786714 CTGACATGCTGAGTGCAAGCAGATTTATGGG
1 CTGACATGCTGAGTGCAAGCAGATTTATGGG
7786745 CTGACATGCTGAGTG
1 CTGACATGCTGAGTG
7786760 TTATTGGATT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.25, C:0.16, G:0.34, T:0.26
Consensus pattern (31 bp):
CTGACATGCTGAGTGCAAGCAGATTTATGGG
Found at i:7786864 original size:93 final size:93
Alignment explanation
Indices: 7786703--7786874 Score: 202
Period size: 93 Copynumber: 1.8 Consensus size: 93
7786693 GAGTGGAAGC
* * * * * * * * ***
7786703 AGATTTATGGGCTGACATGCTGAGTGCAAGCAGATTTATGGGCTGACATGCTGAGTGTTATTGGA
1 AGATTTATGGGCTAACACGCTGAGTGCAACCAGATGTATGGGCGGACACGCTAAGTGGTAGCAGA
*
7786768 TTTACGGCATCACAAGCTGACTTCTTGT
66 TTTAAGGCATCACAAGCTGACTTCTTGT
*
7786796 AGATTTATGGGCTAACACGCTGAGTGCAACCAGATGTATGTGG-GGACACGCTAAGTGGTAGCAT
1 AGATTTATGGGCTAACACGCTGAGTGCAACCAGATGTATG-GGCGGACACGCTAAGTGGTAGCAG
*
7786860 ATTTAAGGCGTCACA
65 ATTTAAGGCATCACA
7786875 CTCTGAATTC
Statistics
Matches: 64, Mismatches: 14, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
93 62 0.97
94 2 0.03
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (93 bp):
AGATTTATGGGCTAACACGCTGAGTGCAACCAGATGTATGGGCGGACACGCTAAGTGGTAGCAGA
TTTAAGGCATCACAAGCTGACTTCTTGT
Found at i:7788686 original size:31 final size:31
Alignment explanation
Indices: 7788648--7789070 Score: 314
Period size: 31 Copynumber: 13.6 Consensus size: 31
7788638 AACCATAAAC
* * *
7788648 AGTAAAATGTTGTGACATGTCGTGCATATCA
1 AGTAAAATGTTGTGACACGCCATGCATATCA
*
7788679 AGTAAAATATTGTGACACGCCATGCATATCA
1 AGTAAAATGTTGTGACACGCCATGCATATCA
* * *
7788710 AGTTAAATGTTATCACACGCCATGCATATCA
1 AGTAAAATGTTGTGACACGCCATGCATATCA
* * *
7788741 AGTAAAATTTTGTGACATGCCATGCACAT-A
1 AGTAAAATGTTGTGACACGCCATGCATATCA
** * *
7788771 CCCTAAAATGCTGTGACACGCCATGCATAACA
1 -AGTAAAATGTTGTGACACGCCATGCATATCA
* * *
7788803 AGCAAAATGTTGTGACACTCCATCCATAAT-A
1 AGTAAAATGTTGTGACACGCCATGCAT-ATCA
** * *
7788834 AAAAAAATTGTTGTGACACGCAATGCATAACA
1 AGTAAAA-TGTTGTGACACGCCATGCATATCA
* * * *
7788866 AGTAAAACGTTGTGACAGGCCATCCATAACA
1 AGTAAAATGTTGTGACACGCCATGCATATCA
* * *
7788897 AGCAAATTGTTGTGACACGCCATGCATAACA
1 AGTAAAATGTTGTGACACGCCATGCATATCA
* * * * *
7788928 AGTTAAATATTGTGGCACGCCATCCATAACA
1 AGTAAAATGTTGTGACACGCCATGCATATCA
* * * * *
7788959 AGCAAACA-CTTGTGACACGCCAAGGATAACA
1 AGTAAA-ATGTTGTGACACGCCATGCATATCA
* * * * * * *
7788990 AGCAAAATGTTCTAACTCACCATG-AGTAACG
1 AGTAAAATGTTGTGACACGCCATGCA-TATCA
* * * *
7789021 AGTTATATGTTATGACAGGCCATGCATATCA
1 AGTAAAATGTTGTGACACGCCATGCATATCA
* *
7789052 AGTCAAATGTTGTCACACG
1 AGTAAAATGTTGTGACACG
7789071 TTAAATAGTT
Statistics
Matches: 303, Mismatches: 80, Indels: 18
0.76 0.20 0.04
Matches are distributed among these distances:
30 3 0.01
31 273 0.90
32 27 0.09
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (31 bp):
AGTAAAATGTTGTGACACGCCATGCATATCA
Found at i:7788888 original size:125 final size:124
Alignment explanation
Indices: 7788651--7788956 Score: 314
Period size: 125 Copynumber: 2.5 Consensus size: 124
7788641 CATAAACAGT
* * * * * * * ***
7788651 AAAATGTTGTGACATGTCGTGCATATCAAGTAAAATATTGTGACACGCCATGCAT-ATCAAGTTA
1 AAAATGCTGTGACACGCCATGCATAACAAGCAAAATATTGTGACACGCCATCCATAAT-AAAAAA
* * * * ** *
7788715 AA-TGTTATCACACGCCATGCATATCAAGTAAAATTTTGTGACATGCCATGCACAT-AC-CC
65 AATTGTTGTGACACGCAATGCATAACAAGTAAAACGTTGTGACAGGCCAT-C-CATAACACC
* *
7788774 TAAAATGCTGTGACACGCCATGCATAACAAGCAAAATGTTGTGACACTCCATCCATAATAAAAAA
1 -AAAATGCTGTGACACGCCATGCATAACAAGCAAAATATTGTGACACGCCATCCATAATAAAAAA
*
7788839 AATTGTTGTGACACGCAATGCATAACAAGTAAAACGTTGTGACAGGCCATCCATAACAAGC
65 AATTGTTGTGACACGCAATGCATAACAAGTAAAACGTTGTGACAGGCCATCCATAAC-ACC
* * ** *
7788900 AAATTGTTGTGACACGCCATGCATAACAAGTTAAATATTGTGGCACGCCATCCATAA
1 AAAATGCTGTGACACGCCATGCATAACAAGCAAAATATTGTGACACGCCATCCATAA
7788957 CAAGCAAACA
Statistics
Matches: 150, Mismatches: 27, Indels: 9
0.81 0.15 0.05
Matches are distributed among these distances:
123 3 0.02
124 54 0.36
125 92 0.61
126 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (124 bp):
AAAATGCTGTGACACGCCATGCATAACAAGCAAAATATTGTGACACGCCATCCATAATAAAAAAA
ATTGTTGTGACACGCAATGCATAACAAGTAAAACGTTGTGACAGGCCATCCATAACACC
Found at i:7788972 original size:156 final size:156
Alignment explanation
Indices: 7788688--7788976 Score: 350
Period size: 156 Copynumber: 1.9 Consensus size: 156
7788678 AAGTAAAATA
* * * * * *
7788688 TTGTGACACGCCATGCATATCAAGTTAAATGTTATCACACGCCATGCATATCAAGTAAAATTTTG
1 TTGTGACACGCAATGCATAACAAGTAAAACGTTATCACACGCCATCCATAACAAGTAAAATTTTG
* * * * *
7788753 TGACATGCCATGCACATACCCTAAAATGCTGTGACACGCCATGCATAACAAGCAAAATGTTGTGA
66 TGACACGCCATGCACATACACTAAAATACTGTGACACGCCATCCATAACAAGCAAAATCTTGTGA
7788818 CACTCCATCCATAATAAAAAAAATTG
131 CACTCCATCCATAATAAAAAAAATTG
* * * *
7788844 TTGTGACACGCAATGCATAACAAGTAAAACGTTGTGACAGGCCATCCATAACAAG-CAAATTGTT
1 TTGTGACACGCAATGCATAACAAGTAAAACGTTATCACACGCCATCCATAACAAGTAAAATT-TT
* * * * *
7788908 GTGACACGCCATGCATA-ACAAGTTAAATATTGTGGCACGCCATCCATAACAAGCAAACA-CTTG
65 GTGACACGCCATGCACATAC-ACTAAAATACTGTGACACGCCATCCATAACAAGCAAA-ATCTTG
7788971 TGACAC
128 TGACAC
7788977 GCCAAGGATA
Statistics
Matches: 110, Mismatches: 20, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
155 7 0.06
156 102 0.93
157 1 0.01
ACGTcount: A:0.37, C:0.23, G:0.16, T:0.24
Consensus pattern (156 bp):
TTGTGACACGCAATGCATAACAAGTAAAACGTTATCACACGCCATCCATAACAAGTAAAATTTTG
TGACACGCCATGCACATACACTAAAATACTGTGACACGCCATCCATAACAAGCAAAATCTTGTGA
CACTCCATCCATAATAAAAAAAATTG
Found at i:7789599 original size:156 final size:156
Alignment explanation
Indices: 7789305--7789629 Score: 434
Period size: 156 Copynumber: 2.1 Consensus size: 156
7789295 CGACTGGGTC
* ** * *
7789305 AACTGCAATAACATATATAACTGTGTTATTCAATAATCATATATTGAATTGTTGAACATTAACTG
1 AACTGCAATTACATATATAACTGTGTTATTCAATAATCATATACGGAATTATTGAACATTAACCG
* * * * * *
7789370 TTACAACTTTAATATCCTAATCGGCGGCTCGTTAGCAGTCTGCGGTGGAGCCGGACCCATCGGTG
66 TTACAACTTTAATATCCTAACCGGCGACTCGTTAGCAGTATGAGGTGGAGCCGGACCCATCGATC
* *
7789435 CTTGAGGACCAGTCGTCGCTTTCACA
131 CTTAAGGACCAGTCGTCGCTTCCACA
*
7789461 AACTGCAATTACATATATAACTGTGTTATTCAATAATCATGTACGGAATTATTGAACATTAACCG
1 AACTGCAATTACATATATAACTGTGTTATTCAATAATCATATACGGAATTATTGAACATTAACCG
* * * * * *
7789526 TTACAACTTTAATATCCTTACCGTCGACTTGTTAGCTGTATGAGGTTGAGCCGGACCGATCGATC
66 TTACAACTTTAATATCCTAACCGGCGACTCGTTAGCAGTATGAGGTGGAGCCGGACCCATCGATC
** * *
7789591 CTTAAGGACTTGTTGTCGCTTCCATA
131 CTTAAGGACCAGTCGTCGCTTCCACA
7789617 AACTGCAATTACA
1 AACTGCAATTACA
7789630 GAAGTTACTG
Statistics
Matches: 145, Mismatches: 24, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
156 145 1.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (156 bp):
AACTGCAATTACATATATAACTGTGTTATTCAATAATCATATACGGAATTATTGAACATTAACCG
TTACAACTTTAATATCCTAACCGGCGACTCGTTAGCAGTATGAGGTGGAGCCGGACCCATCGATC
CTTAAGGACCAGTCGTCGCTTCCACA
Found at i:7789681 original size:156 final size:155
Alignment explanation
Indices: 7789305--7789689 Score: 353
Period size: 156 Copynumber: 2.5 Consensus size: 155
7789295 CGACTGGGTC
* * * * * ** * ** *
7789305 AACTGCAATAACATATATAACTGTGTTATTCAATAATCATATATTGAATTGTTGAACATTAACTG
1 AACTGCAATTACAGATATAACTGTGTTACTCAATAAACATGTACGGAATT-ATGAACACAAACCG
* * * * * *
7789370 TTACAACTTTAATATCCTAATCGGCGGCTCGTTAGCAGTCTGCGGTGGAGCCGGACCCATCGGTG
65 TTACAACTTTAATATCCTAACCGGCGACTCGTTAGCAGTATGAGGTGGAGCCGGACCCATCGATC
* *
7789435 CTTGAGGACCAGTCGTCGCTTTCACA
130 CTTAAGGACCAGTCGTCGCTTCCACA
* * * **
7789461 AACTGCAATTACATATATAACTGTGTTATTCAATAATCATGTACGGAATTATTGAACATTAACCG
1 AACTGCAATTACAGATATAACTGTGTTACTCAATAAACATGTACGGAATTA-TGAACACAAACCG
* * * * * *
7789526 TTACAACTTTAATATCCTTACCGTCGACTTGTTAGCTGTATGAGGTTGAGCCGGACCGATCGATC
65 TTACAACTTTAATATCCTAACCGGCGACTCGTTAGCAGTATGAGGTGGAGCCGGACCCATCGATC
** * *
7789591 CTTAAGGACTTGTTGTCGCTTCCATA
130 CTTAAGGACCAGTCGTCGCTTCCACA
* * *
7789617 AACTGCAATTACAGA-AGTTACTGTGTTACTCGATAAACATATGT-GGGAATGTA-GAACACAAA
1 AACTGCAATTACAGATA-TAACTGTGTTACTCAATAAAC--ATGTACGGAAT-TATGAACACAAA
*
7789679 CCGTTAAAACT
62 CCGTTACAACT
7789690 GATCTTACTG
Statistics
Matches: 191, Mismatches: 33, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
155 1 0.01
156 179 0.94
157 5 0.03
158 6 0.03
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (155 bp):
AACTGCAATTACAGATATAACTGTGTTACTCAATAAACATGTACGGAATTATGAACACAAACCGT
TACAACTTTAATATCCTAACCGGCGACTCGTTAGCAGTATGAGGTGGAGCCGGACCCATCGATCC
TTAAGGACCAGTCGTCGCTTCCACA
Found at i:7791331 original size:31 final size:31
Alignment explanation
Indices: 7791293--7791626 Score: 427
Period size: 31 Copynumber: 10.8 Consensus size: 31
7791283 AATAAGGAAT
* * *
7791293 AAATGTTGTGACACGCCATTCATAGCAAGCA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
*
7791324 AAATGTTGTGACACACCATGCATAACAAGCT-
1 AAATGTTGTGACACGCCATGCATAACAAG-TA
*
7791355 AAATGTTGTGACACGCCATGCATAACAAGTT
1 AAATGTTGTGACACGCCATGCATAACAAGTA
* * *
7791386 GAACGTTGTGACACGCCATGCATAACAAGTC
1 AAATGTTGTGACACGCCATGCATAACAAGTA
7791417 AAATGTTGTGACACGCCATGCATAACAAGTA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
*
7791448 AAATGTTGTGACACGCCATGCATAGCAAGTA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
* ** * *
7791479 AATTGTTGTGACACATCATGCATATCAAGTG
1 AAATGTTGTGACACGCCATGCATAACAAGTA
* *
7791510 AAATGCTGTCACACGCCATGCATAACAAGTA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
* *
7791541 AAATGTTATGACACGCCATGCATATCAAGTA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
* * * *
7791572 AAATGCTGTCACACGCCATGCATATCAAGTC
1 AAATGTTGTGACACGCCATGCATAACAAGTA
* * *
7791603 AAATGTTCTCACATGCCATGCATA
1 AAATGTTGTGACACGCCATGCATA
7791627 TCAAATCAAA
Statistics
Matches: 266, Mismatches: 35, Indels: 4
0.87 0.11 0.01
Matches are distributed among these distances:
30 1 0.00
31 265 1.00
ACGTcount: A:0.36, C:0.22, G:0.18, T:0.24
Consensus pattern (31 bp):
AAATGTTGTGACACGCCATGCATAACAAGTA
Found at i:7792337 original size:47 final size:47
Alignment explanation
Indices: 7792252--7792665 Score: 485
Period size: 47 Copynumber: 8.8 Consensus size: 47
7792242 TAAACCATGA
* * * *
7792252 CCATGTCGTGTCACCAACTCTGAAGTCTAGTGTGTCACAGCTTCCCT
1 CCATGGCGTGTCACCAACTCTGAACTCTAGCGTGTCACAGATTCCCT
* * * *
7792299 CCATGGCGTGTTACCAACTTTGAACTCT-GATGTCTCACAGATTCCCT
1 CCATGGCGTGTCACCAACTCTGAACTCTAG-CGTGTCACAGATTCCCT
* * *
7792346 CCATGGCGTTTCACCAACTTTGAACACT-GACGTGTCACAGATTCCCT
1 CCATGGCGTGTCACCAACTCTGAACTCTAG-CGTGTCACAGATTCCCT
* * *
7792393 CCATGCCATGTCACCAACTCCT-AACTCTAGCGTGTCACAGATTCCAT
1 CCATGGCGTGTCACCAACT-CTGAACTCTAGCGTGTCACAGATTCCCT
** * * *
7792440 CCATGGCGTGTCGTCAACTCTGAACACTGGCGTGTCACAGATTCCTT
1 CCATGGCGTGTCACCAACTCTGAACTCTAGCGTGTCACAGATTCCCT
*
7792487 CCATGTCGTGTCACCAACTCCT-AACTCTAGCGTGTCACAGATTCCCT
1 CCATGGCGTGTCACCAACT-CTGAACTCTAGCGTGTCACAGATTCCCT
* * * * * * *
7792534 CCATGGAGTCTCACCAACTCTGAACGCTGGAGTATCACAAATTCCCT
1 CCATGGCGTGTCACCAACTCTGAACTCTAGCGTGTCACAGATTCCCT
* * *
7792581 CCATGGCGTGTCGCCAACTTTGAACTCTAGCGTGTCACAGCTTCCCT
1 CCATGGCGTGTCACCAACTCTGAACTCTAGCGTGTCACAGATTCCCT
*
7792628 CCATGGCGTGTCACCAACTCTTAACTCTAGCGTGTCAC
1 CCATGGCGTGTCACCAACTCTGAACTCTAGCGTGTCAC
7792666 CAACTCTTAA
Statistics
Matches: 310, Mismatches: 51, Indels: 12
0.83 0.14 0.03
Matches are distributed among these distances:
46 5 0.02
47 301 0.97
48 4 0.01
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.28
Consensus pattern (47 bp):
CCATGGCGTGTCACCAACTCTGAACTCTAGCGTGTCACAGATTCCCT
Found at i:7792665 original size:24 final size:24
Alignment explanation
Indices: 7792633--7792689 Score: 114
Period size: 24 Copynumber: 2.4 Consensus size: 24
7792623 TCCCTCCATG
7792633 GCGTGTCACCAACTCTTAACTCTA
1 GCGTGTCACCAACTCTTAACTCTA
7792657 GCGTGTCACCAACTCTTAACTCTA
1 GCGTGTCACCAACTCTTAACTCTA
7792681 GCGTGTCAC
1 GCGTGTCAC
7792690 ACATTCCTTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.23, C:0.33, G:0.16, T:0.28
Consensus pattern (24 bp):
GCGTGTCACCAACTCTTAACTCTA
Found at i:7792702 original size:71 final size:71
Alignment explanation
Indices: 7792586--7792736 Score: 200
Period size: 71 Copynumber: 2.1 Consensus size: 71
7792576 TCCCTCCATG
* * *
7792586 GCGTGTCGCCAACTTTGAACTCTAGCGTGTCACAGCTTCCCTCCATGGCGTGTCACCAACTCTTA
1 GCGTGTCACCAACTTTGAACTCTAGCGTGTCACAGCTTCCCTCCATGGCGTCTCACCAACTCTGA
7792651 ACT-CTA
66 A-TGCTA
* *
7792657 GCGTGTCACCAACTCTT-AACTCTAGCGTGTCACA-CATTCCTTCCATGGTGTCTCACCAACTCT
1 GCGTGTCACCAACT-TTGAACTCTAGCGTGTCACAGC-TTCCCTCCATGGCGTCTCACCAACTCT
*
7792720 GAATGCTG
64 GAATGCTA
7792728 GCGTGTCAC
1 GCGTGTCAC
7792737 AAATTCCCTC
Statistics
Matches: 71, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
70 2 0.03
71 67 0.94
72 2 0.03
ACGTcount: A:0.20, C:0.33, G:0.19, T:0.28
Consensus pattern (71 bp):
GCGTGTCACCAACTTTGAACTCTAGCGTGTCACAGCTTCCCTCCATGGCGTCTCACCAACTCTGA
ATGCTA
Found at i:7792702 original size:118 final size:118
Alignment explanation
Indices: 7792544--7792771 Score: 296
Period size: 118 Copynumber: 1.9 Consensus size: 118
7792534 CCATGGAGTC
* * * *
7792544 TCACCAACTCTGAACGCTGGAGTATCACAAATTCCCTCCATGGCGTGTCGCCAACTTTGAACT-C
1 TCACCAACTCTGAACGCTAGAGTATCACAAATTCCCTCCATGGCGTCTCACCAACTCTGAA-TGC
** * *
7792608 TAGCGTGTCACAGCTTCCCTCCATGGCGTGTCACCAACTCTTAACTCTAGCGTG
65 TAGCGTGTCACAAATTCCCTCCATGCCGTGTCACCAACTCTGAACTCTAGCGTG
* * * * * * *
7792662 TCACCAACTCTTAACTCTAGCGTGTCACACATTCCTTCCATGGTGTCTCACCAACTCTGAATGCT
1 TCACCAACTCTGAACGCTAGAGTATCACAAATTCCCTCCATGGCGTCTCACCAACTCTGAATGCT
*
7792727 GGCGTGTCACAAATTCCCTCCATGCCGTGTCACCAACTCTGAACT
66 AGCGTGTCACAAATTCCCTCCATGCCGTGTCACCAACTCTGAACT
7792772 TTGGCATCTC
Statistics
Matches: 93, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
117 1 0.01
118 92 0.99
ACGTcount: A:0.22, C:0.34, G:0.17, T:0.27
Consensus pattern (118 bp):
TCACCAACTCTGAACGCTAGAGTATCACAAATTCCCTCCATGGCGTCTCACCAACTCTGAATGCT
AGCGTGTCACAAATTCCCTCCATGCCGTGTCACCAACTCTGAACTCTAGCGTG
Found at i:7792704 original size:165 final size:165
Alignment explanation
Indices: 7792493--7792829 Score: 485
Period size: 165 Copynumber: 2.0 Consensus size: 165
7792483 CCTTCCATGT
*
7792493 CGTGTCACCAACTCCTAACTCTAGCGTGTCACAGATTCCCTCCATGGAGTCTCACCAACTCTGAA
1 CGTGTCACCAACTCCTAACTCTAGCGTGTCACACATTCCCTCCATGGAGTCTCACCAACTCTGAA
* * * * * *
7792558 CGCTGGAGTATCACAAATTCCCTCCATGGCGTGTCGCCAACTTTGAACTCTAGCGTGTCACAGCT
66 CGCTGGAGTATCACAAATTCCCTCCATGCCGTGTCACCAACTCTGAACTCTAGCATCTCACAGAT
* * * *
7792623 TCCCTCCATGGCGTGTCACCAACTCTTAACTCTAG
131 TCCCTCCATGGCGTCTCACCAACTCTGAACACTAA
* * *
7792658 CGTGTCACCAACTCTTAACTCTAGCGTGTCACACATTCCTTCCATGGTGTCTCACCAACTCTGAA
1 CGTGTCACCAACTCCTAACTCTAGCGTGTCACACATTCCCTCCATGGAGTCTCACCAACTCTGAA
* * * * * *
7792723 TGCTGGCGTGTCACAAATTCCCTCCATGCCGTGTCACCAACTCTGAACTTTGGCATCTCATAGAT
66 CGCTGGAGTATCACAAATTCCCTCCATGCCGTGTCACCAACTCTGAACTCTAGCATCTCACAGAT
*
7792788 TCCCTCCATGGCGTCTTACCAACTCTGAACACTAA
131 TCCCTCCATGGCGTCTCACCAACTCTGAACACTAA
7792823 CGTGTCA
1 CGTGTCA
7792830 TAGATTCCCT
Statistics
Matches: 151, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
165 151 1.00
ACGTcount: A:0.23, C:0.34, G:0.17, T:0.27
Consensus pattern (165 bp):
CGTGTCACCAACTCCTAACTCTAGCGTGTCACACATTCCCTCCATGGAGTCTCACCAACTCTGAA
CGCTGGAGTATCACAAATTCCCTCCATGCCGTGTCACCAACTCTGAACTCTAGCATCTCACAGAT
TCCCTCCATGGCGTCTCACCAACTCTGAACACTAA
Found at i:7792717 original size:47 final size:47
Alignment explanation
Indices: 7792657--7793003 Score: 356
Period size: 47 Copynumber: 7.4 Consensus size: 47
7792647 CTTAACTCTA
* * * * *
7792657 GCGTGTCACCAACTCTTAACTCTAGCGTGTCACACATTCCTTCCATG
1 GCGTCTCACCAACTCTGAACTCTGGCGTGTCACAGATTCCCTCCATG
* *
7792704 GTGTCTCACCAACTCTGAA-TGCTGGCGTGTCACAAATTCCCTCCATG
1 GCGTCTCACCAACTCTGAACT-CTGGCGTGTCACAGATTCCCTCCATG
* * * * * *
7792751 CCGTGTCACCAACTCTGAACTTTGGCATCTCATAGATTCCCTCCATG
1 GCGTCTCACCAACTCTGAACTCTGGCGTGTCACAGATTCCCTCCATG
* * ** *
7792798 GCGTCTTACCAACTCTGAACACTAACGTGTCATAGATTCCCTCCATG
1 GCGTCTCACCAACTCTGAACTCTGGCGTGTCACAGATTCCCTCCATG
* * * **
7792845 TCGTGTCACCAACTCCT-AACTTTGGAATGTCACAGATTCCCTCCATG
1 GCGTCTCACCAACT-CTGAACTCTGGCGTGTCACAGATTCCCTCCATG
* **
7792892 GTGTCTCACCAACTCTGAAAGCTGGCGTGTCACAGATTCCCTCCATG
1 GCGTCTCACCAACTCTGAACTCTGGCGTGTCACAGATTCCCTCCATG
* ** * * * * *
7792939 GCGTGTCGTCAACTCTTAACTCTAGCTTCTCATAGATTCCCTCCATG
1 GCGTCTCACCAACTCTGAACTCTGGCGTGTCACAGATTCCCTCCATG
7792986 GCGTCTCACCAACTCTGA
1 GCGTCTCACCAACTCTGA
7793004 CCGGTGCCGT
Statistics
Matches: 240, Mismatches: 56, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
46 3 0.01
47 234 0.98
48 3 0.01
ACGTcount: A:0.22, C:0.33, G:0.16, T:0.29
Consensus pattern (47 bp):
GCGTCTCACCAACTCTGAACTCTGGCGTGTCACAGATTCCCTCCATG
Found at i:7792718 original size:212 final size:212
Alignment explanation
Indices: 7792445--7792865 Score: 535
Period size: 212 Copynumber: 2.0 Consensus size: 212
7792435 TCCATCCATG
** * * *
7792445 GCGTGTCGTCAACTCTGAACACTGGCGTGTCACAGATTCCTTCCATGTCGTGTCACCAACTCCT-
1 GCGTGTCACCAACTCTGAACACTAGCGTGTCACACATTCCTTCCATGTCGTCTCACCAACT-CTG
* *
7792509 AACT-CTAGCGTGTCACAGATTCCCTCCATGGAGTCTCACCAACTCTGAACGCTGG-AGTATCAC
65 AA-TGCTAGCGTGTCACAAATTCCCTCCATGCAGTCTCACCAACTCTGAACGCTGGCA-TATCAC
* * * * * *
7792572 AAATTCCCTCCATGGCGTGTCGCCAACTTTGAACTCTAGCGTGTCACAGCTTCCCTCCATGGCGT
128 AAATTCCCTCCATGGCGTCTCACCAACTCTGAACACTAACGTGTCACAGATTCCCTCCATGGCGT
*
7792637 GTCACCAACTCTTAACTCTA
193 GTCACCAACTCCTAACTCTA
* *
7792657 GCGTGTCACCAACTCTTAACTCTAGCGTGTCACACATTCCTTCCATGGT-GTCTCACCAACTCTG
1 GCGTGTCACCAACTCTGAACACTAGCGTGTCACACATTCCTTCCAT-GTCGTCTCACCAACTCTG
* * * ** * * *
7792721 AATGCTGGCGTGTCACAAATTCCCTCCATGCCGTGTCACCAACTCTGAACTTTGGCATCTCATAG
65 AATGCTAGCGTGTCACAAATTCCCTCCATGCAGTCTCACCAACTCTGAACGCTGGCATATCACAA
* * *
7792786 ATTCCCTCCATGGCGTCTTACCAACTCTGAACACTAACGTGTCATAGATTCCCTCCATGTCGTGT
130 ATTCCCTCCATGGCGTCTCACCAACTCTGAACACTAACGTGTCACAGATTCCCTCCATGGCGTGT
7792851 CACCAACTCCTAACT
195 CACCAACTCCTAACT
7792866 TTGGAATGTC
Statistics
Matches: 178, Mismatches: 27, Indels: 8
0.84 0.13 0.04
Matches are distributed among these distances:
211 3 0.02
212 172 0.97
213 3 0.02
ACGTcount: A:0.22, C:0.33, G:0.17, T:0.28
Consensus pattern (212 bp):
GCGTGTCACCAACTCTGAACACTAGCGTGTCACACATTCCTTCCATGTCGTCTCACCAACTCTGA
ATGCTAGCGTGTCACAAATTCCCTCCATGCAGTCTCACCAACTCTGAACGCTGGCATATCACAAA
TTCCCTCCATGGCGTCTCACCAACTCTGAACACTAACGTGTCACAGATTCCCTCCATGGCGTGTC
ACCAACTCCTAACTCTA
Found at i:7792721 original size:259 final size:259
Alignment explanation
Indices: 7792401--7792907 Score: 660
Period size: 259 Copynumber: 2.0 Consensus size: 259
7792391 CTCCATGCCA
* * **
7792401 TGTCACCAACTCCTAACTCTAGCGTGTCACAGATTCCATCCATGGCGTGTCGTCAACTCTGAACA
1 TGTCACCAACTCCTAACTCTAGCGTGTCACACATTCCATCCATGGCGTCTCACCAACTCTGAACA
* * * * *
7792466 CTGGCGTGTCACAGATTCCTTCCATGTCGTGTCACCAACTCCT-AACTCTAGCGTGTCACAGATT
66 CTGGCGTGTCACAAATTCCCTCCATGCCGTGTCACCAACT-CTGAACTCTAGCATCTCACAGATT
* * *
7792530 CCCTCCATGGAGTCTCACCAACTCTGAACGCTGGA-GTATCACAAATTCCCTCCATGGCGTGTCG
130 CCCTCCATGGAGTCTCACCAACTCTGAACACT-AACGTATCACAAATTCCCTCCATGGCGTGTCA
* ** * *
7792594 CCAACT-TTGAACTCTAGCGTGTCACAGCTTCCCTCCATGGCGTGTCACCAACTCTTAACTCTAG
194 CCAACTCCT-AACTCTAGAATGTCACAGATTCCCTCCATGGCGTCTCACCAACTCTTAACTCTAG
7792658 CG
258 CG
* * * **
7792660 TGTCACCAACTCTTAACTCTAGCGTGTCACACATTCCTTCCATGGTGTCTCACCAACTCTGAATG
1 TGTCACCAACTCCTAACTCTAGCGTGTCACACATTCCATCCATGGCGTCTCACCAACTCTGAACA
* * *
7792725 CTGGCGTGTCACAAATTCCCTCCATGCCGTGTCACCAACTCTGAACTTTGGCATCTCATAGATTC
66 CTGGCGTGTCACAAATTCCCTCCATGCCGTGTCACCAACTCTGAACTCTAGCATCTCACAGATTC
* * * * * *
7792790 CCTCCATGGCGTCTTACCAACTCTGAACACTAACGTGTCATAGATTCCCTCCATGTCGTGTCACC
131 CCTCCATGGAGTCTCACCAACTCTGAACACTAACGTATCACAAATTCCCTCCATGGCGTGTCACC
* * *
7792855 AACTCCTAACTTTGGAATGTCACAGATTCCCTCCATGGTGTCTCACCAACTCT
196 AACTCCTAACTCTAGAATGTCACAGATTCCCTCCATGGCGTCTCACCAACTCT
7792908 GAAAGCTGGC
Statistics
Matches: 211, Mismatches: 34, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
258 3 0.01
259 207 0.98
260 1 0.00
ACGTcount: A:0.22, C:0.33, G:0.17, T:0.28
Consensus pattern (259 bp):
TGTCACCAACTCCTAACTCTAGCGTGTCACACATTCCATCCATGGCGTCTCACCAACTCTGAACA
CTGGCGTGTCACAAATTCCCTCCATGCCGTGTCACCAACTCTGAACTCTAGCATCTCACAGATTC
CCTCCATGGAGTCTCACCAACTCTGAACACTAACGTATCACAAATTCCCTCCATGGCGTGTCACC
AACTCCTAACTCTAGAATGTCACAGATTCCCTCCATGGCGTCTCACCAACTCTTAACTCTAGCG
Found at i:7792796 original size:94 final size:94
Alignment explanation
Indices: 7792658--7793003 Score: 433
Period size: 94 Copynumber: 3.7 Consensus size: 94
7792648 TTAACTCTAG
* * * * *
7792658 CGTGTCACCAACTCTTAACTCTAGCGTGTCACACATTCCTTCCATGGTGTCTCACCAACTCTGAA
1 CGTGTCACCAACTCTTAACTCTAGCATCTCACAGATTCCCTCCATGGCGTCTCACCAACTCTGAA
* *
7792723 TGCTGGCGTGTCACAAATTCCCTCCATGC
66 AGCTGGCGTGTCACAGATTCCCTCCATGC
* * * * *
7792752 CGTGTCACCAACTCTGAACTTTGGCATCTCATAGATTCCCTCCATGGCGTCTTACCAACTCTGAA
1 CGTGTCACCAACTCTTAACTCTAGCATCTCACAGATTCCCTCCATGGCGTCTCACCAACTCTGAA
** * *
7792817 CA-CTAACGTGTCATAGATTCCCTCCATGT
66 -AGCTGGCGTGTCACAGATTCCCTCCATGC
* * * * * *
7792846 CGTGTCACCAACTCCTAACTTTGGAATGTCACAGATTCCCTCCATGGTGTCTCACCAACTCTGAA
1 CGTGTCACCAACTCTTAACTCTAGCATCTCACAGATTCCCTCCATGGCGTCTCACCAACTCTGAA
*
7792911 AGCTGGCGTGTCACAGATTCCCTCCATGG
66 AGCTGGCGTGTCACAGATTCCCTCCATGC
** * *
7792940 CGTGTCGTCAACTCTTAACTCTAGCTTCTCATAGATTCCCTCCATGGCGTCTCACCAACTCTGA
1 CGTGTCACCAACTCTTAACTCTAGCATCTCACAGATTCCCTCCATGGCGTCTCACCAACTCTGA
7793004 CCGGTGCCGT
Statistics
Matches: 213, Mismatches: 37, Indels: 4
0.84 0.15 0.02
Matches are distributed among these distances:
93 1 0.00
94 212 1.00
ACGTcount: A:0.22, C:0.33, G:0.16, T:0.29
Consensus pattern (94 bp):
CGTGTCACCAACTCTTAACTCTAGCATCTCACAGATTCCCTCCATGGCGTCTCACCAACTCTGAA
AGCTGGCGTGTCACAGATTCCCTCCATGC
Found at i:7795764 original size:17 final size:18
Alignment explanation
Indices: 7795742--7795784 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
7795732 TTTTATTAAT
7795742 TATTTTTT-ACTTTTATA
1 TATTTTTTAACTTTTATA
*
7795759 TATTTTTTTAATTTTTATA
1 TA-TTTTTTAACTTTTATA
7795778 TATTTTT
1 TATTTTT
7795785 AATATAATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 2 0.09
18 11 0.48
19 10 0.43
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.74
Consensus pattern (18 bp):
TATTTTTTAACTTTTATA
Found at i:7795785 original size:17 final size:18
Alignment explanation
Indices: 7795745--7795787 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
7795735 TATTAATTAT
* *
7795745 TTTTTACTTTTATATATT
1 TTTTTAATTTTATATATA
7795763 TTTTTAATTTT-TATATA
1 TTTTTAATTTTATATATA
7795780 TTTTTAAT
1 TTTTTAAT
7795788 ATAATTAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 13 0.57
18 10 0.43
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTTTAATTTTATATATA
Found at i:7799120 original size:33 final size:33
Alignment explanation
Indices: 7799073--7799137 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
7799063 ATGATATTAT
* *
7799073 GGATATATAACTTGATTATGTTTTAACTTTGAA
1 GGATATATAACTTGATTATGTATTAAATTTGAA
*
7799106 GGATGTATAACTTGATTATGTATTAAATTTGA
1 GGATATATAACTTGATTATGTATTAAATTTGA
7799138 CTGACGTAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.34, C:0.05, G:0.17, T:0.45
Consensus pattern (33 bp):
GGATATATAACTTGATTATGTATTAAATTTGAA
Found at i:7802896 original size:21 final size:21
Alignment explanation
Indices: 7802861--7802902 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
7802851 AATTAACCTA
*
7802861 ATTCAATATATGAGCTCAAATC
1 ATTCAACATATGAGCT-AAATC
7802883 ATTCAACA-ATGAGCTAAATC
1 ATTCAACATATGAGCTAAATC
7802903 CTTACCTTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 5 0.26
21 7 0.37
22 7 0.37
ACGTcount: A:0.43, C:0.19, G:0.10, T:0.29
Consensus pattern (21 bp):
ATTCAACATATGAGCTAAATC
Found at i:7805303 original size:2 final size:2
Alignment explanation
Indices: 7805296--7805346 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
7805286 GACTTGTGAA
7805296 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7805338 AT AT AT AT A
1 AT AT AT AT A
7805347 GATCACAAGA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7809241 original size:57 final size:57
Alignment explanation
Indices: 7809165--7809320 Score: 206
Period size: 57 Copynumber: 2.7 Consensus size: 57
7809155 AGAGCATTCT
* * * * *
7809165 GCCATAAATGTATCTATACATTGCCCCAATATATTGATACATTCATTCTAAATT-AG
1 GCCAAAAATGTATCGATACATTGCCCCAATGTATCGATACATTCATTCAAAATTAAG
* * *
7809221 GACCAACAATGTATCGATACATTGCCCTAGTGTATCGATACATTCATTCAAAATTAAG
1 G-CCAAAAATGTATCGATACATTGCCCCAATGTATCGATACATTCATTCAAAATTAAG
* *
7809279 GTCAAAAATGTATCGATACATTGGCCCAATGTATCGATACAT
1 GCCAAAAATGTATCGATACATTGCCCCAATGTATCGATACAT
7809321 CAGAGAAGAA
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
56 1 0.01
57 81 0.95
58 3 0.04
ACGTcount: A:0.36, C:0.20, G:0.13, T:0.31
Consensus pattern (57 bp):
GCCAAAAATGTATCGATACATTGCCCCAATGTATCGATACATTCATTCAAAATTAAG
Found at i:7815670 original size:21 final size:20
Alignment explanation
Indices: 7815640--7815678 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
7815630 CTCCTCTAAG
*
7815640 TAATCATCATGCCTACCAACA
1 TAATCATCAT-CATACCAACA
*
7815661 TAATCGTCATCATACCAA
1 TAATCATCATCATACCAA
7815679 TCAATAGTGT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.38, C:0.31, G:0.05, T:0.26
Consensus pattern (20 bp):
TAATCATCATCATACCAACA
Found at i:7816480 original size:22 final size:21
Alignment explanation
Indices: 7816452--7816527 Score: 73
Period size: 22 Copynumber: 3.5 Consensus size: 21
7816442 TAAGTCACAT
7816452 AATGCCTAAAAACCATTCATGC
1 AATGCCT-AAAACCATTCATGC
*
7816474 AATGCCTACAACCTAGTT-ATGC
1 AATGCCTAAAACC-A-TTCATGC
* ** *
7816496 AATGCCTACAACCAAGCACGC
1 AATGCCTAAAACCATTCATGC
7816517 AATGCCTAAAA
1 AATGCCTAAAA
7816528 ACTAGAGATG
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
21 19 0.41
22 25 0.54
23 2 0.04
ACGTcount: A:0.39, C:0.29, G:0.12, T:0.20
Consensus pattern (21 bp):
AATGCCTAAAACCATTCATGC
Found at i:7816626 original size:22 final size:22
Alignment explanation
Indices: 7816598--7816653 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
7816588 CATAGAATAT
** *
7816598 CTAAAAACCAGTCTTGTAATGC
1 CTAAAAACCAGTCGCGCAATGC
* * *
7816620 CTAAAAATCAATGGCGCAATGC
1 CTAAAAACCAGTCGCGCAATGC
7816642 CTAAAAACCAGT
1 CTAAAAACCAGT
7816654 AATATAATGC
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.41, C:0.23, G:0.14, T:0.21
Consensus pattern (22 bp):
CTAAAAACCAGTCGCGCAATGC
Found at i:7820583 original size:26 final size:26
Alignment explanation
Indices: 7820553--7820602 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
7820543 CGGATTTCAG
*
7820553 CTCTTAGGTTTTCTCTCCTTTTTCCT
1 CTCTTAGATTTTCTCTCCTTTTTCCT
* * *
7820579 CTCTTTGATTTTCTTTTCTTTTTC
1 CTCTTAGATTTTCTCTCCTTTTTC
7820603 GATCTTTAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.04, C:0.26, G:0.06, T:0.64
Consensus pattern (26 bp):
CTCTTAGATTTTCTCTCCTTTTTCCT
Found at i:7825398 original size:21 final size:22
Alignment explanation
Indices: 7825373--7825413 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
7825363 CAAAAAGTAC
7825373 AAGAATCAT-GAAA-AATAGACT
1 AAGAAT-ATAGAAATAATAGACT
7825394 AAGAATATAGAAATAATAGA
1 AAGAATATAGAAATAATAGA
7825414 TGTTCAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 2 0.11
21 10 0.56
22 6 0.33
ACGTcount: A:0.61, C:0.05, G:0.15, T:0.20
Consensus pattern (22 bp):
AAGAATATAGAAATAATAGACT
Found at i:7832022 original size:13 final size:13
Alignment explanation
Indices: 7832004--7832028 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7831994 GGAAAAATTG
7832004 TGATTTTATAAAA
1 TGATTTTATAAAA
7832017 TGATTTTATAAA
1 TGATTTTATAAA
7832029 TTTTCTGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:7847215 original size:26 final size:26
Alignment explanation
Indices: 7847159--7847209 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
7847149 TTACTAATTG
* **
7847159 ATAATTTAATTATTAGTATTTTATTT
1 ATAATTTAATCATTAGTATTTTAAAT
*
7847185 ATAATTTAATCATTATTATTTTAAA
1 ATAATTTAATCATTAGTATTTTAAA
7847210 ATTAATATTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (26 bp):
ATAATTTAATCATTAGTATTTTAAAT
Found at i:7847218 original size:17 final size:17
Alignment explanation
Indices: 7847198--7847270 Score: 60
Period size: 17 Copynumber: 4.2 Consensus size: 17
7847188 ATTTAATCAT
7847198 TATTATTTTAAAATTAA
1 TATTATTTTAAAATTAA
*
7847215 TATTATATTTATAATTTAA
1 TATTAT-TTTA-AAATTAA
* * *
7847234 -ATGATGTTATAATTAA
1 TATTATTTTAAAATTAA
*
7847250 AATTA-TTTAAATATTAA
1 TATTATTTTAAA-ATTAA
7847267 TATT
1 TATT
7847271 TTAAACTTAT
Statistics
Matches: 43, Mismatches: 9, Indels: 8
0.72 0.15 0.13
Matches are distributed among these distances:
16 9 0.21
17 20 0.47
18 8 0.19
19 6 0.14
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (17 bp):
TATTATTTTAAAATTAA
Found at i:7847264 original size:41 final size:43
Alignment explanation
Indices: 7847219--7847309 Score: 109
Period size: 41 Copynumber: 2.2 Consensus size: 43
7847209 AATTAATATT
*
7847219 ATATTTATAATTTAAA-TGATGTTATAATTAAA-ATTA-TTT-AA
1 ATATTAATAATTTAAACTGAT-TTA-AATTAAATATTATTTTAAA
* *
7847260 ATATTAATATTTTAAACTTATTTAAATTAAATATTATTTTAAA
1 ATATTAATAATTTAAACTGATTTAAATTAAATATTATTTTAAA
7847303 ATATTAA
1 ATATTAA
7847310 AAACTAAACA
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
40 7 0.16
41 21 0.49
42 6 0.14
43 9 0.21
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.49
Consensus pattern (43 bp):
ATATTAATAATTTAAACTGATTTAAATTAAATATTATTTTAAA
Found at i:7847280 original size:25 final size:24
Alignment explanation
Indices: 7847246--7847294 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
7847236 GATGTTATAA
*
7847246 TTAAAATTATTTAAATATTAATATT
1 TTAAAATTATTTAAAT-TAAATATT
*
7847271 TTAAACTTATTTAAATTAAATATT
1 TTAAAATTATTTAAATTAAATATT
7847295 ATTTTAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 7 0.32
25 15 0.68
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (24 bp):
TTAAAATTATTTAAATTAAATATT
Found at i:7860866 original size:29 final size:30
Alignment explanation
Indices: 7860813--7860890 Score: 79
Period size: 29 Copynumber: 2.6 Consensus size: 30
7860803 ATTATTAATT
* * **
7860813 ATAAAAATTT-ATTTAATTAAAAATAAGAGT
1 ATAAAAATTTAATTAAATT-AAAATAAAAAA
*
7860843 GTAAAAATTTAATTAAATT-AAATAAAAAA
1 ATAAAAATTTAATTAAATTAAAATAAAAAA
*
7860872 ATAAAAATTTATTTAAATT
1 ATAAAAATTTAATTAAATT
7860891 TTTAAAAATA
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
29 24 0.60
30 9 0.22
31 7 0.17
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (30 bp):
ATAAAAATTTAATTAAATTAAAATAAAAAA
Found at i:7861881 original size:24 final size:24
Alignment explanation
Indices: 7861854--7861910 Score: 96
Period size: 24 Copynumber: 2.4 Consensus size: 24
7861844 AGTTGTGTAT
7861854 GATAAAATGTAAAGATGTCTTTTA
1 GATAAAATGTAAAGATGTCTTTTA
*
7861878 GATAAAATGTAAATATGTCTTTTA
1 GATAAAATGTAAAGATGTCTTTTA
*
7861902 GACAAAATG
1 GATAAAATG
7861911 GTGCCTTAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.44, C:0.05, G:0.16, T:0.35
Consensus pattern (24 bp):
GATAAAATGTAAAGATGTCTTTTA
Found at i:7864587 original size:2 final size:2
Alignment explanation
Indices: 7864580--7864626 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
7864570 TGTCTATAGC
7864580 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7864622 AT AT A
1 AT AT A
7864627 NCTTAATTCA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7864811 original size:239 final size:238
Alignment explanation
Indices: 7864389--7864831 Score: 780
Period size: 239 Copynumber: 1.9 Consensus size: 238
7864379 TTGTAAAGCC
*
7864389 CTTAATTCAACCCTTGATTATTTAATCCCTTAAGGTGAAGGATTTATAATCCACAATGGAGTTGA
1 CTTAATTCAACCATTGATTATTTAATCCCTTAAGGTGAAGGATTTATAATCCACAATGGAGTTGA
*
7864454 AAAGAGTGAAAACTACAACAAATATCCAATCAAGACAAGCAAAACAGAGGGTTTCTCGCTGTAAC
66 AAAGAGTGAAAACTACAACAAATATCCAATCAAGACAAGCAAAACAGAGGGTTTCTCGCTGCAAC
*
7864519 GGAAAGGCATTCTATAGCATATAGTACAATACATTTTTTGTTTTCACAACTTGTCTATAGCATAT
131 GGAAAGGCATTCTATAGCATATAGTACAATACATTTTTTATTTTCACAACTTGTCTATAGCATAT
7864584 ATATATATATATATATATATATATATATATATATATATATATA
196 ATATATATATATATATATATATATATATATATATATATATATA
7864627 NCTTAATTCAACCATTGATTATTTAATCCCTTAAGGTGAAGGATTTATAATCCACAATGGAGTTG
1 -CTTAATTCAACCATTGATTATTTAATCCCTTAAGGTGAAGGATTTATAATCCACAATGGAGTTG
* * *
7864692 AAAAGAGTGAAAACTACAGCAAATATCCAATCAAGATAAGCAAAACAGAGGGTTTCTCGCTGCAG
65 AAAAGAGTGAAAACTACAACAAATATCCAATCAAGACAAGCAAAACAGAGGGTTTCTCGCTGCAA
* * *
7864757 CGGAAAGGCATTTTGTAGCATATAGTACAATCACA-TTTTTATTTTCATAACTTGTCTATAGCAT
130 CGGAAAGGCATTCTATAGCATATAGTACAAT-ACATTTTTTATTTTCACAACTTGTCTATAGCAT
7864821 ATATATATATA
194 ATATATATATA
7864832 CATGTACACC
Statistics
Matches: 194, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
239 191 0.98
240 3 0.02
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (238 bp):
CTTAATTCAACCATTGATTATTTAATCCCTTAAGGTGAAGGATTTATAATCCACAATGGAGTTGA
AAAGAGTGAAAACTACAACAAATATCCAATCAAGACAAGCAAAACAGAGGGTTTCTCGCTGCAAC
GGAAAGGCATTCTATAGCATATAGTACAATACATTTTTTATTTTCACAACTTGTCTATAGCATAT
ATATATATATATATATATATATATATATATATATATATATATA
Found at i:7864899 original size:35 final size:35
Alignment explanation
Indices: 7864860--7864943 Score: 114
Period size: 35 Copynumber: 2.4 Consensus size: 35
7864850 CTTACTCAGC
7864860 TCATGTGCACTCCCTACACACACAAGGCAATATCA
1 TCATGTGCACTCCCTACACACACAAGGCAATATCA
* ***
7864895 TCATGTGCACTCCCTACACGCACATTTCAATATCA
1 TCATGTGCACTCCCTACACACACAAGGCAATATCA
**
7864930 TCACATGCACTCCC
1 TCATGTGCACTCCC
7864944 GCCCACATCA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 43 1.00
ACGTcount: A:0.30, C:0.37, G:0.10, T:0.24
Consensus pattern (35 bp):
TCATGTGCACTCCCTACACACACAAGGCAATATCA
Found at i:7865021 original size:19 final size:19
Alignment explanation
Indices: 7864997--7865043 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
7864987 CCAGCATCGT
7864997 CACGTGCACACCCACACCG
1 CACGTGCACACCCACACCG
*
7865016 CACGTGCACTCCCACACCG
1 CACGTGCACACCCACACCG
7865035 CACGTGCAC
1 CACGTGCAC
7865044 GGTTATAGCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.23, C:0.51, G:0.17, T:0.09
Consensus pattern (19 bp):
CACGTGCACACCCACACCG
Found at i:7866946 original size:13 final size:13
Alignment explanation
Indices: 7866928--7866965 Score: 76
Period size: 13 Copynumber: 2.9 Consensus size: 13
7866918 TTCTAGAAAA
7866928 TTTATAAAATCAT
1 TTTATAAAATCAT
7866941 TTTATAAAATCAT
1 TTTATAAAATCAT
7866954 TTTATAAAATCA
1 TTTATAAAATCA
7866966 CAATTTCTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.47, C:0.08, G:0.00, T:0.45
Consensus pattern (13 bp):
TTTATAAAATCAT
Found at i:7869133 original size:19 final size:19
Alignment explanation
Indices: 7869109--7869150 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
7869099 GGTGGCAAGG
*
7869109 TGAAAATGGAATGGAAGCT
1 TGAAAATGGAATGGAAGCA
*
7869128 TGAAAATGGCATGGAAGCA
1 TGAAAATGGAATGGAAGCA
7869147 TGAA
1 TGAA
7869151 GGAGAAGAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.43, C:0.07, G:0.31, T:0.19
Consensus pattern (19 bp):
TGAAAATGGAATGGAAGCA
Found at i:7876752 original size:21 final size:21
Alignment explanation
Indices: 7876713--7876753 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
7876703 TAAATAATAT
*
7876713 AAATAATAAGAAAATAAAGAA
1 AAATAATAAGAAAAGAAAGAA
* *
7876734 AAATAATAATAATAGAAAGA
1 AAATAATAAGAAAAGAAAGA
7876754 GACCCACATG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.73, C:0.00, G:0.10, T:0.17
Consensus pattern (21 bp):
AAATAATAAGAAAAGAAAGAA
Found at i:7876975 original size:26 final size:27
Alignment explanation
Indices: 7876946--7876996 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
7876936 CGACGTGCTG
7876946 AAGAAGAAGAAAGAGA-AAAAAGAAGA
1 AAGAAGAAGAAAGAGAGAAAAAGAAGA
* *
7876972 AAGAAGAAGGAAGAGAGAAAGAGAA
1 AAGAAGAAGAAAGAGAGAAAAAGAA
7876997 CAGCAATGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 15 0.68
27 7 0.32
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (27 bp):
AAGAAGAAGAAAGAGAGAAAAAGAAGA
Found at i:7884403 original size:14 final size:13
Alignment explanation
Indices: 7884386--7884425 Score: 55
Period size: 14 Copynumber: 3.0 Consensus size: 13
7884376 GAAATAAAAG
7884386 AAGAAAGGAGAAGA
1 AAGAAAGGAGAA-A
7884400 AAGAAA-GAGAAA
1 AAGAAAGGAGAAA
7884412 AAGAAAGAGAGAAA
1 AAGAAAG-GAGAAA
7884426 GGGAGAGCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 7 0.29
13 5 0.21
14 12 0.50
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (13 bp):
AAGAAAGGAGAAA
Found at i:7884432 original size:12 final size:12
Alignment explanation
Indices: 7884386--7884426 Score: 55
Period size: 12 Copynumber: 3.2 Consensus size: 12
7884376 GAAATAAAAG
7884386 AAGAAAGGAGAAGA
1 AAGAAA-GAG-AGA
*
7884400 AAGAAAGAGAAA
1 AAGAAAGAGAGA
7884412 AAGAAAGAGAGA
1 AAGAAAGAGAGA
7884424 AAG
1 AAG
7884427 GGAGAGCGGC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 16 0.64
13 3 0.12
14 6 0.24
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (12 bp):
AAGAAAGAGAGA
Found at i:7884677 original size:61 final size:63
Alignment explanation
Indices: 7884560--7884704 Score: 170
Period size: 63 Copynumber: 2.3 Consensus size: 63
7884550 GCTCCTAAGG
* * * * *
7884560 AGAAGGAAGAGAGAGGGAGAGCAACAGCGTGTCGAAGGAGAAAGAAGAGATAGAAGACAAAGA
1 AGAAGAAAGAGAGAGGGAAAGCAACAGCGTGCCGAAGGAGAAAGAAGAGATAGAAGAAAAAAA
* * *
7884623 AGAAGAAAGAGAGAGGGAAAGCAAC-G-GTGCCGGAGGAGAAGGAAGAGGGT-GAAGAAAAAAA
1 AGAAGAAAGAGAGAGGGAAAGCAACAGCGTGCCGAAGGAGAAAGAAGA-GATAGAAGAAAAAAA
7884684 AGAAGAAAAAGAGAGAGGGAA
1 AGAAG--AAAGAGAGAGGGAA
7884705 GGAATAAAGA
Statistics
Matches: 71, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
61 31 0.44
62 3 0.04
63 37 0.52
ACGTcount: A:0.51, C:0.06, G:0.39, T:0.03
Consensus pattern (63 bp):
AGAAGAAAGAGAGAGGGAAAGCAACAGCGTGCCGAAGGAGAAAGAAGAGATAGAAGAAAAAAA
Found at i:7886455 original size:11 final size:11
Alignment explanation
Indices: 7886436--7886466 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
7886426 AGACCTTATG
*
7886436 ATTGATATTTA
1 ATTGTTATTTA
7886447 ATTGTTATTTA
1 ATTGTTATTTA
7886458 ATTGTTATT
1 ATTGTTATT
7886467 ATTTCGAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.29, C:0.00, G:0.10, T:0.61
Consensus pattern (11 bp):
ATTGTTATTTA
Found at i:7897970 original size:17 final size:17
Alignment explanation
Indices: 7897945--7897987 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
7897935 GCTGTTGCTT
*
7897945 TTCTCTTTGTATCTTTC
1 TTCTTTTTGTATCTTTC
*
7897962 TTCTTTTTGTTTCTTTC
1 TTCTTTTTGTATCTTTC
*
7897979 TTATTTTTG
1 TTCTTTTTG
7897988 GCTTTCATTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.05, C:0.16, G:0.07, T:0.72
Consensus pattern (17 bp):
TTCTTTTTGTATCTTTC
Found at i:7903299 original size:17 final size:17
Alignment explanation
Indices: 7903277--7903309 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7903267 TTATTTCTTC
*
7903277 TTTTTCTTTTTATTTTG
1 TTTTTCATTTTATTTTG
7903294 TTTTTCATTTTATTTT
1 TTTTTCATTTTATTTT
7903310 TGATCTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.09, C:0.06, G:0.03, T:0.82
Consensus pattern (17 bp):
TTTTTCATTTTATTTTG
Found at i:7912943 original size:11 final size:11
Alignment explanation
Indices: 7912927--7912958 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
7912917 TTTAACTTAA
7912927 AAGCTATTATG
1 AAGCTATTATG
7912938 AAGCTATTATG
1 AAGCTATTATG
*
7912949 AAGCTCTTAT
1 AAGCTATTAT
7912959 AAAAAATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.34, C:0.12, G:0.16, T:0.38
Consensus pattern (11 bp):
AAGCTATTATG
Found at i:7916737 original size:37 final size:36
Alignment explanation
Indices: 7916685--7916805 Score: 188
Period size: 37 Copynumber: 3.3 Consensus size: 36
7916675 CATATACATA
* *
7916685 CATCGTCATCATGTGTGCACTCCTTACTCGCACACT
1 CATCATCATCATGTGTGCACTCCCTACTCGCACACT
7916721 CTATCATCATCATGTGTGCACTCCCTACTCGCACACT
1 C-ATCATCATCATGTGTGCACTCCCTACTCGCACACT
*
7916758 CCATCATCATCATGTGTGCACTCCCTACCCGCACACT
1 -CATCATCATCATGTGTGCACTCCCTACTCGCACACT
*
7916795 CAACATCATCA
1 CATCATCATCA
7916806 CCCAACGTCA
Statistics
Matches: 79, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
36 11 0.14
37 67 0.85
38 1 0.01
ACGTcount: A:0.23, C:0.39, G:0.11, T:0.27
Consensus pattern (36 bp):
CATCATCATCATGTGTGCACTCCCTACTCGCACACT
Found at i:7931151 original size:17 final size:17
Alignment explanation
Indices: 7931129--7931163 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
7931119 AGCAAAATAT
7931129 GCACACACAAAGGGGGA
1 GCACACACAAAGGGGGA
**
7931146 GCACACACTTAGGGGGA
1 GCACACACAAAGGGGGA
7931163 G
1 G
7931164 TAATCTCCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.34, C:0.23, G:0.37, T:0.06
Consensus pattern (17 bp):
GCACACACAAAGGGGGA
Found at i:7932109 original size:22 final size:20
Alignment explanation
Indices: 7932084--7932129 Score: 56
Period size: 22 Copynumber: 2.2 Consensus size: 20
7932074 AAGGTTTTGA
7932084 TTAAGCCTGGTAAAAGCCATTG
1 TTAAGCCTGGTAAAAG-C-TTG
* *
7932106 TTAAGCTTGGTGAAAGCTTG
1 TTAAGCCTGGTAAAAGCTTG
7932126 TTAA
1 TTAA
7932130 TTTCACCGGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.32
21 1 0.05
22 14 0.64
ACGTcount: A:0.30, C:0.13, G:0.24, T:0.33
Consensus pattern (20 bp):
TTAAGCCTGGTAAAAGCTTG
Found at i:7932624 original size:38 final size:38
Alignment explanation
Indices: 7932564--7932690 Score: 112
Period size: 38 Copynumber: 3.4 Consensus size: 38
7932554 ATCTGTTGGA
* * * * * *
7932564 AATTTTCAACAGAATATTTTGTTGGTAATTCCGTTGAT
1 AATTTCCAACAAAAAATATTGTTGGAAATTCCATTGAT
* * * *
7932602 AATTTCCAACAAAAACTATTGTTGGAAAATCTATTGGT
1 AATTTCCAACAAAAAATATTGTTGGAAATTCCATTGAT
* * * * *
7932640 GATTTCCAACAAAAAATACTGTT-GAAATTTCATTAAA
1 AATTTCCAACAAAAAATATTGTTGGAAATTCCATTGAT
7932677 AATTTCCAACAAAA
1 AATTTCCAACAAAA
7932691 TATTCCATTG
Statistics
Matches: 69, Mismatches: 20, Indels: 1
0.77 0.22 0.01
Matches are distributed among these distances:
37 21 0.30
38 48 0.70
ACGTcount: A:0.40, C:0.13, G:0.11, T:0.35
Consensus pattern (38 bp):
AATTTCCAACAAAAAATATTGTTGGAAATTCCATTGAT
Found at i:7934701 original size:30 final size:30
Alignment explanation
Indices: 7934632--7934734 Score: 117
Period size: 30 Copynumber: 3.5 Consensus size: 30
7934622 TTAAAATTTT
7934632 TAAATAAATTTTTATA-TTTTATTCTGTT--C
1 TAAATAAATTTTTATATTTTTATT-T-TTAAC
7934661 --AATCAAATTTTTATATTTTTATTTTTAAC
1 TAAAT-AAATTTTTATATTTTTATTTTTAAC
* *
7934690 TAAATAAATTTTTATATTTTTATTTTGAAT
1 TAAATAAATTTTTATATTTTTATTTTTAAC
*
7934720 TAAATAAATTCTTAT
1 TAAATAAATTTTTAT
7934735 GATTAATAAT
Statistics
Matches: 65, Mismatches: 3, Indels: 11
0.82 0.04 0.14
Matches are distributed among these distances:
27 5 0.08
28 12 0.18
29 8 0.12
30 37 0.57
31 3 0.05
ACGTcount: A:0.36, C:0.05, G:0.02, T:0.57
Consensus pattern (30 bp):
TAAATAAATTTTTATATTTTTATTTTTAAC
Found at i:7934842 original size:13 final size:12
Alignment explanation
Indices: 7934824--7934863 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 12
7934814 AATAATGAGG
7934824 TAATATATTGATA
1 TAATATATT-ATA
7934837 TAATATGATTATA
1 TAATAT-ATTATA
7934850 TAATTATATTATA
1 TAA-TATATTATA
7934863 T
1 T
7934864 TTTTCATCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 19 0.76
14 6 0.24
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (12 bp):
TAATATATTATA
Found at i:7935049 original size:2 final size:2
Alignment explanation
Indices: 7935040--7935129 Score: 109
Period size: 2 Copynumber: 46.5 Consensus size: 2
7935030 TTTTTAACAT
7935040 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
7935081 TA TNA -A AA GA TA T- TA T- TA CTA TA TA TA TA TA TA T- TA TA TA
1 TA T-A TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA
7935121 TA TA TA TA T
1 TA TA TA TA T
7935130 GTATCCTCAC
Statistics
Matches: 79, Mismatches: 2, Indels: 14
0.83 0.02 0.15
Matches are distributed among these distances:
1 5 0.06
2 71 0.90
3 3 0.04
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (2 bp):
TA
Found at i:7938880 original size:2 final size:2
Alignment explanation
Indices: 7938822--7938863 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
7938812 ATACATACAA
7938822 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7938863 A
1 A
7938864 AAATTCTGAA
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7953761 original size:21 final size:22
Alignment explanation
Indices: 7953731--7953771 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
7953721 ATCTAGAATT
7953731 TAATTAAAATATTAATATTTAA
1 TAATTAAAATATTAATATTTAA
7953753 TAATT-AAATATTAATATTT
1 TAATTAAAATATTAATATTT
7953772 TTATTAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
TAATTAAAATATTAATATTTAA
Found at i:7954093 original size:26 final size:26
Alignment explanation
Indices: 7954034--7954086 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
7954024 TTAATAATAA
* *
7954034 ATAATTTAAATATTAATATTTTGTTT
1 ATAATTTAAATATTAATATATTATTT
*
7954060 ATAATTTAAATATTATTATGATTATTT
1 ATAATTTAAATATTAATAT-ATTATTT
7954087 TATTTTATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.57
Consensus pattern (26 bp):
ATAATTTAAATATTAATATATTATTT
Found at i:7954123 original size:82 final size:82
Alignment explanation
Indices: 7954008--7954182 Score: 221
Period size: 82 Copynumber: 2.1 Consensus size: 82
7953998 TAATAATTGA
*
7954008 TTATTTATTTAAAATATTAATAATAAATAATTTAAATATTAATATT-TTGTTTATAATTTAAAT-
1 TTATTTATTTAAAATATTAATAATAAATAATTTAAATATTAATATTGTT-TATATAATTTAAATG
7954071 ATTATTATGATTATTTTATT
65 A-TATTATGATTA-TTTATT
* ** * *
7954091 TTATTT-TTTTAAATATTAATAATTGATGATTTAATTATTAATATTGTTTATATAATTTAAATGA
1 TTATTTATTTAAAATATTAATAATAAATAATTTAAATATTAATATTGTTTATATAATTTAAATGA
*
7954155 TATTATGTTTATTTATTT
66 TATTATGATTATTTA-TT
*
7954173 TTAATTATTT
1 TTATTTATTT
7954183 TGTTTTTAAA
Statistics
Matches: 80, Mismatches: 8, Indels: 8
0.83 0.08 0.08
Matches are distributed among these distances:
81 4 0.05
82 64 0.80
83 12 0.15
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (82 bp):
TTATTTATTTAAAATATTAATAATAAATAATTTAAATATTAATATTGTTTATATAATTTAAATGA
TATTATGATTATTTATT
Found at i:7954253 original size:19 final size:19
Alignment explanation
Indices: 7954231--7954293 Score: 74
Period size: 19 Copynumber: 3.2 Consensus size: 19
7954221 ATAATTGATA
7954231 ATTTAAATATTAATATTTT
1 ATTTAAATATTAATATTTT
*
7954250 ATTTATAAT-TTAATATTAGT
1 ATTTA-AATATTAATATT-TT
7954270 ATTTTAAAATATTAATATTTT
1 A-TTT-AAATATTAATATTTT
7954291 ATT
1 ATT
7954294 AAAAGTTGGA
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
19 13 0.35
20 7 0.19
21 8 0.22
22 9 0.24
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (19 bp):
ATTTAAATATTAATATTTT
Found at i:7954282 original size:16 final size:16
Alignment explanation
Indices: 7954261--7954291 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7954251 TTTATAATTT
*
7954261 AATATTAGTATTTTAA
1 AATATTAATATTTTAA
7954277 AATATTAATATTTTA
1 AATATTAATATTTTA
7954292 TTAAAAGTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (16 bp):
AATATTAATATTTTAA
Found at i:7957760 original size:8 final size:8
Alignment explanation
Indices: 7957747--7957776 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
7957737 ATAAAAAGGA
7957747 TTAAAATT
1 TTAAAATT
7957755 TTAAAATT
1 TTAAAATT
7957763 TTAAAATT
1 TTAAAATT
7957771 TTAAAA
1 TTAAAA
7957777 ATGGATCAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (8 bp):
TTAAAATT
Found at i:7958841 original size:13 final size:13
Alignment explanation
Indices: 7958823--7958847 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7958813 AGAGAAATTG
7958823 TGATTTTATAAAA
1 TGATTTTATAAAA
7958836 TGATTTTATAAA
1 TGATTTTATAAA
7958848 TTTTCTGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:7961618 original size:14 final size:14
Alignment explanation
Indices: 7961599--7961625 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7961589 AAAATAAAAA
7961599 AAATTAAAACTAAT
1 AAATTAAAACTAAT
7961613 AAATTAAAACTAA
1 AAATTAAAACTAA
7961626 AATTAAATAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.26
Consensus pattern (14 bp):
AAATTAAAACTAAT
Found at i:7964117 original size:13 final size:13
Alignment explanation
Indices: 7964099--7964123 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7964089 TTCCAGAAAA
7964099 TTTATAAAATCAT
1 TTTATAAAATCAT
7964112 TTTATAAAATCA
1 TTTATAAAATCA
7964124 CAATTTCTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTATAAAATCAT
Found at i:7965522 original size:19 final size:19
Alignment explanation
Indices: 7965498--7965535 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
7965488 CTGCCAAACC
*
7965498 CTCAAATTATACTCCAATA
1 CTCAAATCATACTCCAATA
*
7965517 CTCAAATCATACTCGAATA
1 CTCAAATCATACTCCAATA
7965536 AGTTAAATGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.42, C:0.26, G:0.03, T:0.29
Consensus pattern (19 bp):
CTCAAATCATACTCCAATA
Found at i:7967512 original size:16 final size:16
Alignment explanation
Indices: 7967484--7967566 Score: 64
Period size: 16 Copynumber: 5.4 Consensus size: 16
7967474 AAGTCTTTGT
*
7967484 TGGGT-AATGGGTAAA
1 TGGGTAAATGGGTAAG
* *
7967499 TGGGTTAGTGGGTAAG
1 TGGGTAAATGGGTAAG
* **
7967515 TTGGTAAATGGGTTGG
1 TGGGTAAATGGGTAAG
*
7967531 TGGGTAAGTGGGT-AG
1 TGGGTAAATGGGTAAG
* *
7967546 TAGGTAAATAGGTAA-
1 TGGGTAAATGGGTAAG
7967561 TGGGTA
1 TGGGTA
7967567 GTCCAAAAAA
Statistics
Matches: 52, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
15 21 0.40
16 31 0.60
ACGTcount: A:0.27, C:0.00, G:0.43, T:0.30
Consensus pattern (16 bp):
TGGGTAAATGGGTAAG
Found at i:7967523 original size:24 final size:24
Alignment explanation
Indices: 7967484--7967544 Score: 97
Period size: 24 Copynumber: 2.6 Consensus size: 24
7967474 AAGTCTTTGT
7967484 TGGGTAA-TGGGTAAATGGGTTAG
1 TGGGTAAGTGGGTAAATGGGTTAG
* *
7967507 TGGGTAAGTTGGTAAATGGGTTGG
1 TGGGTAAGTGGGTAAATGGGTTAG
7967531 TGGGTAAGTGGGTA
1 TGGGTAAGTGGGTA
7967545 GTAGGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
23 7 0.21
24 27 0.79
ACGTcount: A:0.23, C:0.00, G:0.46, T:0.31
Consensus pattern (24 bp):
TGGGTAAGTGGGTAAATGGGTTAG
Found at i:7967842 original size:12 final size:12
Alignment explanation
Indices: 7967825--7967985 Score: 62
Period size: 12 Copynumber: 12.5 Consensus size: 12
7967815 CTTACCACTC
7967825 TTTTTTTGAATT
1 TTTTTTTGAATT
*
7967837 TTTTTTT-TATGT
1 TTTTTTTGAAT-T
*
7967849 TTTTTCTGAATT
1 TTTTTTTGAATT
7967861 TTTTTTTGAAAATT
1 TTTTTTTG--AATT
*
7967875 ATTTTTTAGAATAAT
1 -TTTTTTTGAAT--T
*
7967890 TTTTTTGACATGAACT
1 TTTTTT----TGAATT
7967906 TTTTTTTGAAATT
1 TTTTTTTG-AATT
*
7967919 TTTTTTGTAATATATT
1 TTTTTT-T--GA-ATT
*
7967935 TTTTTCTTGAA-A
1 TTTTT-TTGAATT
7967947 TTTTTTTG-ATT
1 TTTTTTTGAATT
* *
7967958 TGTTTTT-AA-A
1 TTTTTTTGAATT
*
7967968 TTTGTTTGAATT
1 TTTTTTTGAATT
7967980 TTTTTT
1 TTTTTT
7967986 ACATGAACCT
Statistics
Matches: 110, Mismatches: 18, Indels: 42
0.65 0.11 0.25
Matches are distributed among these distances:
10 6 0.05
11 14 0.13
12 34 0.31
13 15 0.14
14 12 0.11
15 9 0.08
16 16 0.15
17 1 0.01
18 3 0.03
ACGTcount: A:0.22, C:0.02, G:0.09, T:0.67
Consensus pattern (12 bp):
TTTTTTTGAATT
Found at i:7967843 original size:13 final size:13
Alignment explanation
Indices: 7967825--7967953 Score: 57
Period size: 13 Copynumber: 9.3 Consensus size: 13
7967815 CTTACCACTC
7967825 TTTTTTTGAATTT
1 TTTTTTTGAATTT
*
7967838 TTTTTTT--ATGT
1 TTTTTTTGAATTT
*
7967849 TTTTTCTGAA-TT
1 TTTTTTTGAATTT
*
7967861 TTTTTTTGAAAATTA
1 TTTTTTTG--AATTT
* **
7967876 TTTTTTAGAATAA
1 TTTTTTTGAATTT
*
7967889 TTTTTTTGACATGAACT
1 TTTTTTTGA-AT---TT
7967906 TTTTTTTGAAATTT
1 TTTTTTTG-AATTT
* *
7967920 TTTTTGTAATATATT
1 TTTTTTTGA-AT-TT
7967935 TTTTTCTTGAAATTT
1 TTTTT-TTG-AATTT
7967950 TTTT
1 TTTT
7967954 GATTTGTTTT
Statistics
Matches: 87, Mismatches: 15, Indels: 26
0.68 0.12 0.20
Matches are distributed among these distances:
11 9 0.10
12 8 0.09
13 21 0.24
14 13 0.15
15 21 0.24
16 3 0.03
17 11 0.13
18 1 0.01
ACGTcount: A:0.22, C:0.03, G:0.08, T:0.67
Consensus pattern (13 bp):
TTTTTTTGAATTT
Found at i:7967874 original size:14 final size:15
Alignment explanation
Indices: 7967857--7967953 Score: 66
Period size: 14 Copynumber: 6.6 Consensus size: 15
7967847 GTTTTTTCTG
7967857 AATTTTTTTTTGAA-
1 AATTTTTTTTTGAAT
*
7967871 AATTATTTTTTAGAAT
1 AATT-TTTTTTTGAAT
7967887 AA--TTTTTTTGACAT
1 AATTTTTTTTTGA-AT
*
7967901 GAACTTTTTTTTG-A-
1 -AATTTTTTTTTGAAT
7967915 AA-TTTTTTTTGTAAT
1 AATTTTTTTTTG-AAT
7967930 ATATTTTTTTCTTG-A-
1 A-ATTTTTTT-TTGAAT
7967945 AATTTTTTT
1 AATTTTTTT
7967954 GATTTGTTTT
Statistics
Matches: 69, Mismatches: 2, Indels: 24
0.73 0.02 0.25
Matches are distributed among these distances:
12 9 0.13
13 10 0.14
14 15 0.22
15 14 0.20
16 4 0.06
17 14 0.20
18 3 0.04
ACGTcount: A:0.27, C:0.03, G:0.07, T:0.63
Consensus pattern (15 bp):
AATTTTTTTTTGAAT
Found at i:7967968 original size:21 final size:21
Alignment explanation
Indices: 7967934--7967986 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 21
7967924 TGTAATATAT
*
7967934 TTTTTTCTTGAAATTTTTTTG-A
1 TTTTTT-TT-AAATTTGTTTGAA
7967956 TTTGTTTTTAAATTTGTTTGAA
1 TTT-TTTTTAAATTTGTTTGAA
7967978 TTTTTTTTA
1 TTTTTTTTA
7967987 CATGAACCTG
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
21 16 0.57
22 9 0.32
23 3 0.11
ACGTcount: A:0.19, C:0.02, G:0.09, T:0.70
Consensus pattern (21 bp):
TTTTTTTTAAATTTGTTTGAA
Found at i:7968051 original size:16 final size:15
Alignment explanation
Indices: 7968032--7968069 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
7968022 TTTAATAATT
7968032 AAATAAA-TAAAAATAA
1 AAATAAACT-AAAAT-A
7968048 AAATAAACTAAAATA
1 AAATAAACTAAAATA
7968063 AAATAAA
1 AAATAAA
7968070 AGAAAGTAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 8 0.38
16 12 0.57
17 1 0.05
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (15 bp):
AAATAAACTAAAATA
Found at i:7973855 original size:21 final size:21
Alignment explanation
Indices: 7973829--7973871 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
7973819 TCTCAACATT
* *
7973829 GACAGTTAGCTACTTGATGAG
1 GACAGTTAGATACTCGATGAG
7973850 GACAGTTAGATACTCGATGAG
1 GACAGTTAGATACTCGATGAG
7973871 G
1 G
7973872 TTCCTTGCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.30, C:0.14, G:0.30, T:0.26
Consensus pattern (21 bp):
GACAGTTAGATACTCGATGAG
Found at i:7977832 original size:21 final size:19
Alignment explanation
Indices: 7977796--7977836 Score: 55
Period size: 21 Copynumber: 2.1 Consensus size: 19
7977786 GCATTTTGAG
7977796 TAGTTAATTTAAGTTATTT
1 TAGTTAATTTAAGTTATTT
*
7977815 TAGTTAAATTTTATGTTATTT
1 TAGTT-AA-TTTAAGTTATTT
7977836 T
1 T
7977837 GTTTTAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 5 0.26
20 2 0.11
21 12 0.63
ACGTcount: A:0.29, C:0.00, G:0.10, T:0.61
Consensus pattern (19 bp):
TAGTTAATTTAAGTTATTT
Done.