Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36364294
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2168405 characters in sequence are not A, C, G, or T
File 25 of 91
Found at i:8286721 original size:251 final size:251
Alignment explanation
Indices: 8286278--8289771 Score: 6615
Period size: 251 Copynumber: 14.0 Consensus size: 251
8286268 TATGAAATCC
*
8286278 TCTTGCTTTTGTGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
1 TCTTGCTTTTATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
*
8286343 CAAATTAGAGTTTGTGGGACTTATTATAATAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
66 CAAATTAGAGTTTGTGGGACTTATTATAAAAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
8286408 ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTT
131 ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTT
8286473 TTTATCTAGACGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTG
196 TTTATCTAGACGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTG
*
8286529 TCTTGCTTTTATGTGAAAAAACAAACTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
1 TCTTGCTTTTATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
*
8286594 CAAATTAGAGTTTGTGGGACTTATTATAATAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
66 CAAATTAGAGTTTGTGGGACTTATTATAAAAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
*
8286659 AAAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTG--TTTTTTT
131 ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTT
8286722 TTTATCTAGACGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTG
196 TTTATCTAGACGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTG
*
8286778 TCTTGCTTTTATGTGAAAAAACAAACTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
1 TCTTGCTTTTATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
8286843 CAAATTAGAGTTTGTGGGACTTATTATAAAAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
66 CAAATTAGAGTTTGTGGGACTTATTATAAAAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
8286908 ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTG-TTTTTTTT
131 ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTT
*
8286972 TTTATCTAGACGTGATTTCAAACCTGATTGTATTTATTATTTCTAATGAAATTTTG
196 TTTATCTAGACGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTG
8287028 TCTTGCTTTTATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
1 TCTTGCTTTTATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
*
8287093 CAAATTAGAGTTTGTGGGACTTATTATAATAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
66 CAAATTAGAGTTTGTGGGACTTATTATAAAAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
8287158 ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTT
131 ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTT
*
8287223 TTTATCTAGACGTGAGTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTG
196 TTTATCTAGACGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTG
*
8287279 TCTTGCTTTTATGTGAAAAAACAAACTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
1 TCTTGCTTTTATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
8287344 CAAATTAGAGTTTGTGGGACTTATTATAAAAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
66 CAAATTAGAGTTTGTGGGACTTATTATAAAAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
8287409 ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTG--TTTTTTT
131 ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTT
*
8287472 TTTATCTAGACGTGATTTCAAACCTGATTGTATTTATTATTTCTAATGAAATTTTG
196 TTTATCTAGACGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTG
8287528 TCTTGCTTTTATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
1 TCTTGCTTTTATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
*
8287593 CAAATTAGAGTTTGTGGGACTTATTATAATAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
66 CAAATTAGAGTTTGTGGGACTTATTATAAAAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
8287658 ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTG--TTTTTTT
131 ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTT
8287721 TTTATCTAGACGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTG
196 TTTATCTAGACGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTG
*
8287777 TCTTGCTTTTATGTGAAAAAACAAACTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
1 TCTTGCTTTTATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
*
8287842 CAAATTAGAGTTTGTGGGACTTATTATAAAAAATGTTTAAATGATTTAATATTTTTATTATTGTC
66 CAAATTAGAGTTTGTGGGACTTATTATAAAAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
8287907 ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTT
131 ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTT
8287972 TTTATCTAGACGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTG
196 TTTATCTAGACGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTG
*
8288028 TCTTGCTTTTATGTGAAAAAACAAACTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
1 TCTTGCTTTTATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
8288093 CAAATTAGAGTTTGTGGGACTTATTATAAAAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
66 CAAATTAGAGTTTGTGGGACTTATTATAAAAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
8288158 ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTT
131 ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTT
*
8288223 TTTTTCTAGACGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTG
196 TTTATCTAGACGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTG
8288279 TCTTGCTTTTATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
1 TCTTGCTTTTATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
*
8288344 CAAATTAGAGTTTGTGGGACTTATTATAATAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
66 CAAATTAGAGTTTGTGGGACTTATTATAAAAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
8288409 ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTT
131 ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTT
*
8288474 TTTTTCTAGACGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTG
196 TTTATCTAGACGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTG
8288530 TCTTGCTTTTATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
1 TCTTGCTTTTATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
*
8288595 CAAATTAGAGTTTGTGGGACTTATTATAATAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
66 CAAATTAGAGTTTGTGGGACTTATTATAAAAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
8288660 ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTT
131 ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTT
*
8288725 TTT-TCTAGACGTGATTTCAAACCTGATTGTATTTATTATTTCTAATGAAATTTTG
196 TTTATCTAGACGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTG
8288780 TCTTGCTTTTATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
1 TCTTGCTTTTATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
*
8288845 CAAATTAGAGTTTGTGGGACTTATTATAATAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
66 CAAATTAGAGTTTGTGGGACTTATTATAAAAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
8288910 ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTT
131 ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTT
8288975 TTTATCTAGACGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTG
196 TTTATCTAGACGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTG
*
8289031 TCTTGCTTTTATGTGAAAAAACAAACTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
1 TCTTGCTTTTATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
8289096 CAAATTAGAGTTTGTGGGACTTATTATAAAAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
66 CAAATTAGAGTTTGTGGGACTTATTATAAAAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
8289161 ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAA-T-TTTTTTTTT
131 ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTT
*
8289224 TTTATCTAGACGTGATTTCAAACCTGATTGTATTTATTATTTCTAATGAAATTTTG
196 TTTATCTAGACGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTG
8289280 TCTTGCTTTTATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATA-TTT
1 TCTTGCTTTTATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
8289344 CAAATTAGAGTTTGTGGGACTTATTATAAAAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
66 CAAATTAGAGTTTGTGGGACTTATTATAAAAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
8289409 ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTG---TTTTTT
131 ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTT
* * *
8289471 TTTATCTAGACGTGATTTCAAACCTGGTTGTATTTATTATTTCTAATGAAAATTTG
196 TTTATCTAGACGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTG
8289527 TCTTGCTTTTATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
1 TCTTGCTTTTATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
8289592 CAAATTAGAGTTTGTGGGACTTATTATAAAAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
66 CAAATTAGAGTTTGTGGGACTTATTATAAAAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
*
8289657 ACAACATAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTG--TTTTTTT
131 ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTT
* *
8289720 TTTATCTAGACGTGATTTCAAACTTGATTGTATTTATTATTTCTAATGAAAT
196 TTTATCTAGACGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAAT
8289772 CCAAACTTTC
Statistics
Matches: 3198, Mismatches: 36, Indels: 20
0.98 0.01 0.01
Matches are distributed among these distances:
247 121 0.04
248 244 0.08
249 917 0.29
250 496 0.16
251 1420 0.44
ACGTcount: A:0.33, C:0.09, G:0.14, T:0.44
Consensus pattern (251 bp):
TCTTGCTTTTATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
CAAATTAGAGTTTGTGGGACTTATTATAAAAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTT
TTTATCTAGACGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTG
Found at i:8287221 original size:500 final size:501
Alignment explanation
Indices: 8286278--8289771 Score: 6632
Period size: 500 Copynumber: 7.0 Consensus size: 501
8286268 TATGAAATCC
*
8286278 TCTTGCTTTTGTGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
1 TCTTGCTTTTATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
*
8286343 CAAATTAGAGTTTGTGGGACTTATTATAATAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
66 CAAATTAGAGTTTGTGGGACTTATTATAAAAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
8286408 ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTT
131 ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTT
8286473 TTTATCTAGACGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTGTCTTGCTTT
196 TTTATCTAGACGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTGTCTTGCTTT
*
8286538 TATGTGAAAAAACAAACTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTTCAAATTAGA
261 TATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTTCAAATTAGA
*
8286603 GTTTGTGGGACTTATTATAATAAATGTTTAAATGATTTAAAATTTTTATTATTGTCAAAACGTAG
326 GTTTGTGGGACTTATTATAATAAATGTTTAAATGATTTAAAATTTTTATTATTGTCACAACGTAG
8286668 GAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTG-TTTTTTTTTTATCTAGA
391 GAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTTTTATCTAGA
8286732 CGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTG
456 CGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTG
*
8286778 TCTTGCTTTTATGTGAAAAAACAAACTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
1 TCTTGCTTTTATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
8286843 CAAATTAGAGTTTGTGGGACTTATTATAAAAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
66 CAAATTAGAGTTTGTGGGACTTATTATAAAAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
8286908 ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTG-TTTTTTTT
131 ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTT
*
8286972 TTTATCTAGACGTGATTTCAAACCTGATTGTATTTATTATTTCTAATGAAATTTTGTCTTGCTTT
196 TTTATCTAGACGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTGTCTTGCTTT
8287037 TATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTTCAAATTAGA
261 TATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTTCAAATTAGA
8287102 GTTTGTGGGACTTATTATAATAAATGTTTAAATGATTTAAAATTTTTATTATTGTCACAACGTAG
326 GTTTGTGGGACTTATTATAATAAATGTTTAAATGATTTAAAATTTTTATTATTGTCACAACGTAG
8287167 GAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTTTTTATCTAG
391 GAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTG-TTTTTTTTTTTATCTAG
*
8287232 ACGTGAGTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTG
455 ACGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTG
*
8287279 TCTTGCTTTTATGTGAAAAAACAAACTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
1 TCTTGCTTTTATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
8287344 CAAATTAGAGTTTGTGGGACTTATTATAAAAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
66 CAAATTAGAGTTTGTGGGACTTATTATAAAAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
8287409 ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTG--TTTTTTT
131 ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTT
*
8287472 TTTATCTAGACGTGATTTCAAACCTGATTGTATTTATTATTTCTAATGAAATTTTGTCTTGCTTT
196 TTTATCTAGACGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTGTCTTGCTTT
8287537 TATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTTCAAATTAGA
261 TATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTTCAAATTAGA
8287602 GTTTGTGGGACTTATTATAATAAATGTTTAAATGATTTAAAATTTTTATTATTGTCACAACGTAG
326 GTTTGTGGGACTTATTATAATAAATGTTTAAATGATTTAAAATTTTTATTATTGTCACAACGTAG
8287667 GAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTG-TTTTTTTTTTATCTAGA
391 GAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTTTTATCTAGA
8287731 CGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTG
456 CGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTG
*
8287777 TCTTGCTTTTATGTGAAAAAACAAACTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
1 TCTTGCTTTTATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
*
8287842 CAAATTAGAGTTTGTGGGACTTATTATAAAAAATGTTTAAATGATTTAATATTTTTATTATTGTC
66 CAAATTAGAGTTTGTGGGACTTATTATAAAAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
8287907 ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTT
131 ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTT
8287972 TTTATCTAGACGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTGTCTTGCTTT
196 TTTATCTAGACGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTGTCTTGCTTT
*
8288037 TATGTGAAAAAACAAACTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTTCAAATTAGA
261 TATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTTCAAATTAGA
*
8288102 GTTTGTGGGACTTATTATAAAAAATGTTTAAATGATTTAAAATTTTTATTATTGTCACAACGTAG
326 GTTTGTGGGACTTATTATAATAAATGTTTAAATGATTTAAAATTTTTATTATTGTCACAACGTAG
*
8288167 GAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTTTTTTTCTAG
391 GAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTG-TTTTTTTTTTTATCTAG
8288232 ACGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTG
455 ACGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTG
8288279 TCTTGCTTTTATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
1 TCTTGCTTTTATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
*
8288344 CAAATTAGAGTTTGTGGGACTTATTATAATAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
66 CAAATTAGAGTTTGTGGGACTTATTATAAAAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
8288409 ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTT
131 ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTT
*
8288474 TTTTTCTAGACGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTGTCTTGCTTT
196 TTTATCTAGACGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTGTCTTGCTTT
8288539 TATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTTCAAATTAGA
261 TATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTTCAAATTAGA
8288604 GTTTGTGGGACTTATTATAATAAATGTTTAAATGATTTAAAATTTTTATTATTGTCACAACGTAG
326 GTTTGTGGGACTTATTATAATAAATGTTTAAATGATTTAAAATTTTTATTATTGTCACAACGTAG
*
8288669 GAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTTTTTTCTAGA
391 GAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTTTTATCTAGA
*
8288734 CGTGATTTCAAACCTGATTGTATTTATTATTTCTAATGAAATTTTG
456 CGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTG
8288780 TCTTGCTTTTATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
1 TCTTGCTTTTATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
*
8288845 CAAATTAGAGTTTGTGGGACTTATTATAATAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
66 CAAATTAGAGTTTGTGGGACTTATTATAAAAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
8288910 ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTT
131 ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTT
8288975 TTTATCTAGACGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTGTCTTGCTTT
196 TTTATCTAGACGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTGTCTTGCTTT
*
8289040 TATGTGAAAAAACAAACTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTTCAAATTAGA
261 TATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTTCAAATTAGA
*
8289105 GTTTGTGGGACTTATTATAAAAAATGTTTAAATGATTTAAAATTTTTATTATTGTCACAACGTAG
326 GTTTGTGGGACTTATTATAATAAATGTTTAAATGATTTAAAATTTTTATTATTGTCACAACGTAG
8289170 GAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATT-TTTTTTTTTTTATCTAGA
391 GAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTTTTATCTAGA
*
8289234 CGTGATTTCAAACCTGATTGTATTTATTATTTCTAATGAAATTTTG
456 CGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTG
8289280 TCTTGCTTTTATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATA-TTT
1 TCTTGCTTTTATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
8289344 CAAATTAGAGTTTGTGGGACTTATTATAAAAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
66 CAAATTAGAGTTTGTGGGACTTATTATAAAAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
8289409 ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTG---TTTTTT
131 ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTT
* * *
8289471 TTTATCTAGACGTGATTTCAAACCTGGTTGTATTTATTATTTCTAATGAAAATTTGTCTTGCTTT
196 TTTATCTAGACGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTGTCTTGCTTT
8289536 TATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTTCAAATTAGA
261 TATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTTCAAATTAGA
* *
8289601 GTTTGTGGGACTTATTATAAAAAATGTTTAAATGATTTAAAATTTTTATTATTGTCACAACATAG
326 GTTTGTGGGACTTATTATAATAAATGTTTAAATGATTTAAAATTTTTATTATTGTCACAACGTAG
8289666 GAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTG-TTTTTTTTTTATCTAGA
391 GAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTTTTATCTAGA
* *
8289730 CGTGATTTCAAACTTGATTGTATTTATTATTTCTAATGAAAT
456 CGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAAT
8289772 CCAAACTTTC
Statistics
Matches: 2956, Mismatches: 31, Indels: 18
0.98 0.01 0.01
Matches are distributed among these distances:
496 300 0.10
498 247 0.08
499 370 0.13
500 802 0.27
501 744 0.25
502 493 0.17
ACGTcount: A:0.33, C:0.09, G:0.14, T:0.44
Consensus pattern (501 bp):
TCTTGCTTTTATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTT
CAAATTAGAGTTTGTGGGACTTATTATAAAAAATGTTTAAATGATTTAAAATTTTTATTATTGTC
ACAACGTAGGAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTT
TTTATCTAGACGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTGTCTTGCTTT
TATGTGAAAAAACAAATTTAGTTGAGTAATTTAATGTTTTGATATGGTAATATTTTCAAATTAGA
GTTTGTGGGACTTATTATAATAAATGTTTAAATGATTTAAAATTTTTATTATTGTCACAACGTAG
GAATTCGGAATCTAATTACTCATTGTGAAAAAAGTCATCACCAATTGTTTTTTTTTTTATCTAGA
CGTGATTTCAAACCTGATTGTATATATTATTTCTAATGAAATTTTG
Found at i:8290883 original size:72 final size:72
Alignment explanation
Indices: 8290807--8290949 Score: 232
Period size: 72 Copynumber: 2.0 Consensus size: 72
8290797 CTAAGGTAGA
8290807 AAACTTGCAAAATATAAAGAATTAAGAAGCCATAGTCGACCCTGATGAAGCCATAGTCAACTACA
1 AAACTTGCAAAATATAAAGAATTAAGAAGCCATAGTCGACCCTGATGAAGCCATAGTCAACTACA
8290872 CAAAGCC
66 CAAAGCC
* * * * *
8290879 AAACTTGCAAAATTTGAAGAATTAAGAAGCCATAGTCGACCTTGATGAAGGCATAGTCGACTACA
1 AAACTTGCAAAATATAAAGAATTAAGAAGCCATAGTCGACCCTGATGAAGCCATAGTCAACTACA
*
8290944 CCAAGC
66 CAAAGC
8290950 TGGACATAAA
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
72 65 1.00
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.20
Consensus pattern (72 bp):
AAACTTGCAAAATATAAAGAATTAAGAAGCCATAGTCGACCCTGATGAAGCCATAGTCAACTACA
CAAAGCC
Found at i:8291423 original size:29 final size:29
Alignment explanation
Indices: 8291368--8291432 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
8291358 AAAAGTTACT
* * * *
8291368 ATGGGTTTGTGGTGAGCTCGTTAAAAATC
1 ATGGGTTTGTGGTGAACCCATTAAAAACC
*
8291397 ATGGGTTTGTGGTGAACCCATTTAAAACC
1 ATGGGTTTGTGGTGAACCCATTAAAAACC
8291426 ATGGGTT
1 ATGGGTT
8291433 ATCACTTGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.25, C:0.12, G:0.29, T:0.34
Consensus pattern (29 bp):
ATGGGTTTGTGGTGAACCCATTAAAAACC
Found at i:8291589 original size:51 final size:51
Alignment explanation
Indices: 8291484--8291611 Score: 161
Period size: 51 Copynumber: 2.5 Consensus size: 51
8291474 TGATCCTATG
* ** * *
8291484 AAAAAACAAGAATCCC-TTTGTGGATTGTGTAAGGGTTATTGCTTTCTATC
1 AAAAAGCAAGAATCCCTTTTGTGGATTGTGTAAGGGTTATCACTTCCCATC
* *
8291534 AAAAAGCAAGAATCCCTTTTGTGGATTGTGTAAGGGTTATCACTTCCCGTT
1 AAAAAGCAAGAATCCCTTTTGTGGATTGTGTAAGGGTTATCACTTCCCATC
*
8291585 AAAAAGTAAGAAT-CCTTTTAGTGGATT
1 AAAAAGCAAGAATCCCTTTT-GTGGATT
8291612 ATAAATTCTT
Statistics
Matches: 68, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
50 21 0.31
51 47 0.69
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.34
Consensus pattern (51 bp):
AAAAAGCAAGAATCCCTTTTGTGGATTGTGTAAGGGTTATCACTTCCCATC
Found at i:8294463 original size:28 final size:29
Alignment explanation
Indices: 8294422--8294481 Score: 68
Period size: 30 Copynumber: 2.1 Consensus size: 29
8294412 GTCTATGGGC
* *
8294422 AATTTTTCAGTTTT-TGGGGCAAAAATGT
1 AATTTTTCACTTTTAGGGGGCAAAAATGT
* *
8294450 AATTTTTGACTTTTACGGGGGCAAAAGTGT
1 AATTTTTCACTTTTA-GGGGGCAAAAATGT
8294480 AA
1 AA
8294482 ATTTCAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 12 0.46
30 14 0.54
ACGTcount: A:0.30, C:0.08, G:0.23, T:0.38
Consensus pattern (29 bp):
AATTTTTCACTTTTAGGGGGCAAAAATGT
Found at i:8298125 original size:38 final size:40
Alignment explanation
Indices: 8298035--8298137 Score: 138
Period size: 38 Copynumber: 2.6 Consensus size: 40
8298025 ACCCGGCTCA
*
8298035 TGTACATCCCCCCACATCGTGCACATAGCCGGCGCCATAG
1 TGTACATCCCCCCACATCGTGCACATAGCCAGCGCCATAG
* * * * *
8298075 TGTGCATTCCCCCACATCGTGCACA-A-TCAGTGCCATCG
1 TGTACATCCCCCCACATCGTGCACATAGCCAGCGCCATAG
8298113 TGTACATCCCCCCACATCGTGCACA
1 TGTACATCCCCCCACATCGTGCACA
8298138 CGGGCACTAT
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
38 31 0.56
39 1 0.02
40 23 0.42
ACGTcount: A:0.22, C:0.40, G:0.17, T:0.20
Consensus pattern (40 bp):
TGTACATCCCCCCACATCGTGCACATAGCCAGCGCCATAG
Found at i:8300249 original size:50 final size:50
Alignment explanation
Indices: 8300190--8300326 Score: 265
Period size: 50 Copynumber: 2.7 Consensus size: 50
8300180 ATTAAGCAAA
8300190 GAGAAATCATATATTCAAACTACATAATGAATTAAACCATACTAAGTAAG
1 GAGAAATCATATATTCAAACTACATAATGAATTAAACCATACTAAGTAAG
8300240 GAGAAATCATATATTCAAACTACATAATGAATTAAACCATACTAAGTAAG
1 GAGAAATCATATATTCAAACTACATAATGAATTAAACCATACTAAGTAAG
*
8300290 GAGAAATCATATATTCAAACTACATAATGAAATAAAC
1 GAGAAATCATATATTCAAACTACATAATGAATTAAAC
8300327 AATAGTCCTA
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
50 86 1.00
ACGTcount: A:0.51, C:0.14, G:0.09, T:0.26
Consensus pattern (50 bp):
GAGAAATCATATATTCAAACTACATAATGAATTAAACCATACTAAGTAAG
Found at i:8302281 original size:2 final size:2
Alignment explanation
Indices: 8302274--8302300 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8302264 ACTTTCTATA
8302274 AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC A
8302301 NNNNNNNNNN
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:8308795 original size:22 final size:21
Alignment explanation
Indices: 8308766--8308806 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
8308756 GGACAAGTGT
*
8308766 ATGGTGAAAATTTGAAAACAA
1 ATGGTGAAAATTTAAAAACAA
*
8308787 ATGGATGAAATTTTAAAAAC
1 ATGG-TGAAAATTTAAAAAC
8308807 GGGCCAATGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.51, C:0.05, G:0.17, T:0.27
Consensus pattern (21 bp):
ATGGTGAAAATTTAAAAACAA
Found at i:8308964 original size:26 final size:26
Alignment explanation
Indices: 8308908--8308966 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
8308898 GGCCAGCCAT
* *
8308908 AAGGAAAGAACAAGAGAGAAAATAGA
1 AAGGAAAGAACAAAAGAGAAAATACA
* *
8308934 GAGGAAAGGAAGAAAAGAGAAAA-ACA
1 AAGGAAA-GAACAAAAGAGAAAATACA
8308960 AAGGAAA
1 AAGGAAA
8308967 ACTAGAAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
26 14 0.52
27 13 0.48
ACGTcount: A:0.66, C:0.03, G:0.29, T:0.02
Consensus pattern (26 bp):
AAGGAAAGAACAAAAGAGAAAATACA
Found at i:8334214 original size:26 final size:26
Alignment explanation
Indices: 8334158--8334216 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
8334148 GGCTGGCCAT
* *
8334158 AAGGAAAGAACAAGAGAGAAAATAGA
1 AAGGAAAGAACAAAAGAGAAAATACA
* *
8334184 GAGGAAAGGAAGAAAAGAGAAAA-ACA
1 AAGGAAA-GAACAAAAGAGAAAATACA
8334210 AAGGAAA
1 AAGGAAA
8334217 ACTAGAAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
26 14 0.52
27 13 0.48
ACGTcount: A:0.66, C:0.03, G:0.29, T:0.02
Consensus pattern (26 bp):
AAGGAAAGAACAAAAGAGAAAATACA
Found at i:8350996 original size:37 final size:37
Alignment explanation
Indices: 8350955--8351089 Score: 218
Period size: 37 Copynumber: 3.6 Consensus size: 37
8350945 GTGCATTTCA
*
8350955 TACTCGCACA-TTCTATCATCATCATGTGTGCACTCCC
1 TACTCGCACACTTC-AACATCATCATGTGTGCACTCCC
* *
8350992 TACTCGCACACTTCAACTTCATCATGTGTGCATTCCC
1 TACTCGCACACTTCAACATCATCATGTGTGCACTCCC
*
8351029 TACTCGCACACTTCAACTTCATCATGTGTGCACTCCC
1 TACTCGCACACTTCAACATCATCATGTGTGCACTCCC
8351066 TACTCGCACACTTCAACATCATCA
1 TACTCGCACACTTCAACATCATCA
8351090 CACAACATTA
Statistics
Matches: 92, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
37 89 0.97
38 3 0.03
ACGTcount: A:0.24, C:0.36, G:0.10, T:0.30
Consensus pattern (37 bp):
TACTCGCACACTTCAACATCATCATGTGTGCACTCCC
Found at i:8353623 original size:24 final size:26
Alignment explanation
Indices: 8353590--8353639 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
8353580 ATGAACTCTT
8353590 CCCATCTCTTT-CTAATTGGGCCATG
1 CCCATCTCTTTCCTAATTGGGCCATG
* *
8353615 CCCAT-TCTTTCCTTATTGGGTCATG
1 CCCATCTCTTTCCTAATTGGGCCATG
8353640 TCTATTTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 5 0.23
25 17 0.77
ACGTcount: A:0.14, C:0.30, G:0.16, T:0.40
Consensus pattern (26 bp):
CCCATCTCTTTCCTAATTGGGCCATG
Found at i:8353861 original size:85 final size:88
Alignment explanation
Indices: 8353763--8353931 Score: 256
Period size: 89 Copynumber: 2.0 Consensus size: 88
8353753 CTTTCTCACG
* *
8353763 TACAAGAGCTGTCCACAATTTCCTCTCT-T-TCT-T-TCTCATCGTCGGCCACACTTTCTAGCTT
1 TACAAGAGCTGTCCACAATTTCCTCTCTCTCTCTCTCTCTCATCATCGGCCACAATTTCTAGCTT
8353824 TTTCAACCATAATTTTTCAACANT
66 TTTCAACCATAATTTTTCAACA-T
* *
8353848 TACAAGAGTTGTCCACAATTTCCTCTCTCTCTCTCTCTTTCATCATCGGCCACAATTTCTAGCTT
1 TACAAGAGCTGTCCACAATTTCCTCTCTCTCTCTCTCTCTCATCATCGGCCACAATTTCTAGCTT
*
8353913 TTTTAACCATAATTTTTCA
66 TTTCAACCATAATTTTTCA
8353932 GCGGCTAAGG
Statistics
Matches: 75, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
85 27 0.36
86 1 0.01
87 3 0.04
88 1 0.01
89 43 0.57
ACGTcount: A:0.22, C:0.29, G:0.08, T:0.40
Consensus pattern (88 bp):
TACAAGAGCTGTCCACAATTTCCTCTCTCTCTCTCTCTCTCATCATCGGCCACAATTTCTAGCTT
TTTCAACCATAATTTTTCAACAT
Found at i:8353997 original size:34 final size:35
Alignment explanation
Indices: 8353959--8354039 Score: 103
Period size: 34 Copynumber: 2.3 Consensus size: 35
8353949 TATTGATTTC
* * *
8353959 AAAATTAGCAACTAAGCTGCTCTA-TTT-CTTCTCA
1 AAAATCAGCAACTAAGCTACTCTACTTTCCCTC-CA
*
8353993 AAAATCAGCAGCTAAGCTACTCTACTTTCCCTCCA
1 AAAATCAGCAACTAAGCTACTCTACTTTCCCTCCA
8354028 AAAATCAGCAAC
1 AAAATCAGCAAC
8354040 CAAAACAACA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
34 21 0.52
35 16 0.40
36 3 0.08
ACGTcount: A:0.36, C:0.28, G:0.09, T:0.27
Consensus pattern (35 bp):
AAAATCAGCAACTAAGCTACTCTACTTTCCCTCCA
Found at i:8357352 original size:20 final size:20
Alignment explanation
Indices: 8357327--8357366 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
8357317 AGAAGAACAA
8357327 GAAGCTGCTGGAAAAATGAG
1 GAAGCTGCTGGAAAAATGAG
*
8357347 GAAGCTGCTGGAGAAATGAG
1 GAAGCTGCTGGAAAAATGAG
8357367 ATATTTATAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.10, G:0.38, T:0.15
Consensus pattern (20 bp):
GAAGCTGCTGGAAAAATGAG
Found at i:8360210 original size:22 final size:20
Alignment explanation
Indices: 8360180--8360219 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
8360170 CATGAGCTTT
8360180 CTAAATCTTCTAGTCATCATGG
1 CTAAATCTTC-A-TCATCATGG
*
8360202 CTAACTCTTCATCATCAT
1 CTAAATCTTCATCATCAT
8360220 CACATGGTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
21 1 0.06
22 9 0.53
ACGTcount: A:0.28, C:0.28, G:0.07, T:0.38
Consensus pattern (20 bp):
CTAAATCTTCATCATCATGG
Found at i:8363730 original size:75 final size:75
Alignment explanation
Indices: 8363642--8363792 Score: 302
Period size: 75 Copynumber: 2.0 Consensus size: 75
8363632 GAAACACGTG
8363642 TAAGAAATCTTTTGTAATGTGTAAGTAAAATAAATTCATACATACAAAAATTTACTAAGTTATAA
1 TAAGAAATCTTTTGTAATGTGTAAGTAAAATAAATTCATACATACAAAAATTTACTAAGTTATAA
8363707 TGTACAATAA
66 TGTACAATAA
8363717 TAAGAAATCTTTTGTAATGTGTAAGTAAAATAAATTCATACATACAAAAATTTACTAAGTTATAA
1 TAAGAAATCTTTTGTAATGTGTAAGTAAAATAAATTCATACATACAAAAATTTACTAAGTTATAA
8363782 TGTACAATAA
66 TGTACAATAA
8363792 T
1 T
8363793 GGTTACAATG
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 76 1.00
ACGTcount: A:0.48, C:0.08, G:0.09, T:0.35
Consensus pattern (75 bp):
TAAGAAATCTTTTGTAATGTGTAAGTAAAATAAATTCATACATACAAAAATTTACTAAGTTATAA
TGTACAATAA
Found at i:8367198 original size:2 final size:2
Alignment explanation
Indices: 8367191--8367224 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
8367181 NNNNNNNNNN
8367191 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8367225 CAATCATCAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8369806 original size:180 final size:179
Alignment explanation
Indices: 8369620--8369987 Score: 424
Period size: 180 Copynumber: 2.1 Consensus size: 179
8369610 TTTAATTGGA
* * * * *
8369620 AATTAAATTCCTGA-TTTTATGCCACCAAATAGCTTCAAAAGAGAGAC-TAAACCGAA-ACTGCC
1 AATTAAATTCCTCATTTTTA-GCCA-CAAAGAACTTCAAAAG-GACACAAAAACC-AATACTGCC
* *
8369682 T-CTGCAGATAAAGGTCACGG-TTTTGAATTTTTTTG-ACAGCCGAAACCACCTCCTAAAATCCT
62 TCCTGCAGATAAAGGTCACGGTTTTTGAA-ATGTTTGAACAGCC-AAACCACCTCCTAAAATCCT
* *
8369744 GAAAATTTATTCTGGAATAGGTCAATGAGTTCTATATTAGGATAAATTTTATTAAG
125 GAAAATTTATTCTGGAATAGGTCAATGAGTTATATATTACGATAAATTTTATT-AG
* * ** * *
8369800 AATTAAATTCCTCATTTTTAGTCACAAAGAATTTCAAAAGTTCTCAAAAACCAATTCTGCCTCCT
1 AATTAAATTCCTCATTTTTAGCCACAAAGAACTTCAAAAGGACACAAAAACCAATACTGCCTCCT
* *
8369865 GCAGATAAAGGTCACGGTTTTTGAAATGTTTGAATAGCCAAATCACCTCCTAAAATCCTGAAAAT
66 GCAGATAAAGGTCACGGTTTTTGAAATGTTTGAACAGCCAAACCACCTCCTAAAATCCTGAAAAT
* * * ** *
8369930 TTATTCTGGAATAGTTCCATGAGTTATCTATTACGATTTATTTTATTGG
131 TTATTCTGGAATAGGTCAATGAGTTATATATTACGATAAATTTTATTAG
8369979 AATTAAATT
1 AATTAAATT
8369988 TCTAAAGATA
Statistics
Matches: 159, Mismatches: 23, Indels: 13
0.82 0.12 0.07
Matches are distributed among these distances:
178 3 0.02
179 34 0.21
180 105 0.66
181 17 0.11
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.34
Consensus pattern (179 bp):
AATTAAATTCCTCATTTTTAGCCACAAAGAACTTCAAAAGGACACAAAAACCAATACTGCCTCCT
GCAGATAAAGGTCACGGTTTTTGAAATGTTTGAACAGCCAAACCACCTCCTAAAATCCTGAAAAT
TTATTCTGGAATAGGTCAATGAGTTATATATTACGATAAATTTTATTAG
Found at i:8371336 original size:58 final size:57
Alignment explanation
Indices: 8371246--8371365 Score: 186
Period size: 58 Copynumber: 2.1 Consensus size: 57
8371236 CATAATCATC
* * **
8371246 CAAAGTAGTTTGCATGTGATAGATTTATTTTATGCAATTTAATAAATGTTATGCAATG
1 CAAAGTAGTATGCATGTAATAGATTTATTTTATGCAATTTAATAAATGCCATGC-ATG
*
8371304 CAAAGTAGTATGCATGTAATAGATTTATTTTATGCGATTTAATAAATGCCATGCATG
1 CAAAGTAGTATGCATGTAATAGATTTATTTTATGCAATTTAATAAATGCCATGCATG
8371361 CAAAG
1 CAAAG
8371366 ATGAGACCCT
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
57 8 0.14
58 49 0.86
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (57 bp):
CAAAGTAGTATGCATGTAATAGATTTATTTTATGCAATTTAATAAATGCCATGCATG
Found at i:8393470 original size:22 final size:22
Alignment explanation
Indices: 8393445--8393491 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
8393435 CGTCACTCCT
*
8393445 TTCATCACCGTGGCTTCCTCTC
1 TTCACCACCGTGGCTTCCTCTC
8393467 TTCACCACCGTGGCTTCCTCTC
1 TTCACCACCGTGGCTTCCTCTC
8393489 TTC
1 TTC
8393492 CTTTCCTCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.09, C:0.43, G:0.13, T:0.36
Consensus pattern (22 bp):
TTCACCACCGTGGCTTCCTCTC
Found at i:8393907 original size:33 final size:32
Alignment explanation
Indices: 8393844--8393909 Score: 78
Period size: 33 Copynumber: 2.0 Consensus size: 32
8393834 ACAAATTTTC
* * *
8393844 AGCTTTCTTTTTCCTCCAAAAATTGTAGCAAA
1 AGCTCTCTTTTTCCTCCAAAAAGTGCAGCAAA
**
8393876 AGCTCTCTTTTTCCCTCCTCAAAGTGCAGCAAA
1 AGCTCTCTTTTT-CCTCCAAAAAGTGCAGCAAA
8393909 A
1 A
8393910 CCGTTCTCTT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
32 11 0.39
33 17 0.61
ACGTcount: A:0.29, C:0.27, G:0.11, T:0.33
Consensus pattern (32 bp):
AGCTCTCTTTTTCCTCCAAAAAGTGCAGCAAA
Found at i:8398402 original size:35 final size:35
Alignment explanation
Indices: 8398363--8398431 Score: 93
Period size: 35 Copynumber: 2.0 Consensus size: 35
8398353 TTCACCAAGC
* * *
8398363 TTTACAATGGCTTTTACTAGGCTCAACCAAAATCT
1 TTTACAATAGCTTTTACCAGGATCAACCAAAATCT
* *
8398398 TTTACAATAGTTTTTACCAGGATCAACTAAAATC
1 TTTACAATAGCTTTTACCAGGATCAACCAAAATC
8398432 CAACACCTAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.35, C:0.20, G:0.10, T:0.35
Consensus pattern (35 bp):
TTTACAATAGCTTTTACCAGGATCAACCAAAATCT
Found at i:8405648 original size:42 final size:42
Alignment explanation
Indices: 8405589--8405730 Score: 189
Period size: 42 Copynumber: 3.4 Consensus size: 42
8405579 TGTTGATTTG
*
8405589 GACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCT
1 GACCCAGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCT
*
8405631 GACCCAGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGTT
1 GACCCAGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCT
* ** *
8405673 GACCC-GACTATGTGTGAGT-GAGAGTGTGCATAAGCCATTGCT
1 GACCCAG-CTATGTGCGAGTAG-GAGTGCACATAAGCCGTTGCT
*
8405715 GACCCAGCTATATGCG
1 GACCCAGCTATGTGCG
8405731 CATAAGCCAT
Statistics
Matches: 88, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
41 2 0.02
42 85 0.97
43 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.31, T:0.23
Consensus pattern (42 bp):
GACCCAGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCT
Found at i:8415217 original size:43 final size:43
Alignment explanation
Indices: 8415154--8415267 Score: 140
Period size: 43 Copynumber: 2.7 Consensus size: 43
8415144 TATTGACTTG
* * * *
8415154 GCTATGTGCAAGTAAGGAGTGCGCAT-AGGCCGATGATGACCCG
1 GCTATGTGCGAGTAGGGAGTGCGCATGA-CCCGATGATGACCCA
* *
8415197 GTTATGTGCGAGTAGGGAGTGGGCATGACCCGATGATGACCCA
1 GCTATGTGCGAGTAGGGAGTGCGCATGACCCGATGATGACCCA
* *
8415240 GCCATGTGCGAGTGGGGAGTGCGCATGA
1 GCTATGTGCGAGTAGGGAGTGCGCATGA
8415268 GCTGGTGATG
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
43 59 0.98
44 1 0.02
ACGTcount: A:0.23, C:0.19, G:0.39, T:0.19
Consensus pattern (43 bp):
GCTATGTGCGAGTAGGGAGTGCGCATGACCCGATGATGACCCA
Found at i:8415303 original size:23 final size:23
Alignment explanation
Indices: 8415273--8415328 Score: 94
Period size: 23 Copynumber: 2.4 Consensus size: 23
8415263 CATGAGCTGG
8415273 TGATGATGAGACGGTGTGCATGA
1 TGATGATGAGACGGTGTGCATGA
* *
8415296 TGATGATGGGATGGTGTGCATGA
1 TGATGATGAGACGGTGTGCATGA
8415319 TGATGATGAG
1 TGATGATGAG
8415329 TATATGTATA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.25, C:0.05, G:0.41, T:0.29
Consensus pattern (23 bp):
TGATGATGAGACGGTGTGCATGA
Found at i:8419265 original size:35 final size:35
Alignment explanation
Indices: 8419213--8419283 Score: 90
Period size: 35 Copynumber: 2.0 Consensus size: 35
8419203 CTTCACCAAG
* *
8419213 CTTTTACAATGGCTTTTACTAGGC-TCAGCCAAAAC
1 CTTTCACAATGGCTTTTA-TAGGCATCAACCAAAAC
* *
8419248 CTTTCACAATGGGTTTTATCGGCATCAACCAAAAC
1 CTTTCACAATGGCTTTTATAGGCATCAACCAAAAC
8419283 C
1 C
8419284 CAACAACTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
34 4 0.13
35 27 0.87
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (35 bp):
CTTTCACAATGGCTTTTATAGGCATCAACCAAAAC
Found at i:8421507 original size:21 final size:21
Alignment explanation
Indices: 8421483--8421547 Score: 70
Period size: 21 Copynumber: 3.4 Consensus size: 21
8421473 CAAGGCTAAG
8421483 GTATCGAGCCTTCCTATAGAA
1 GTATCGAGCCTTCCTATAGAA
*
8421504 GTATCGAG---ACCTA-AG--
1 GTATCGAGCCTTCCTATAGAA
*
8421519 GTATCGAGCCTTCTTATAGAA
1 GTATCGAGCCTTCCTATAGAA
8421540 GTATCGAG
1 GTATCGAG
8421548 ACCTATCCAA
Statistics
Matches: 35, Mismatches: 3, Indels: 12
0.70 0.06 0.24
Matches are distributed among these distances:
15 8 0.23
17 2 0.06
18 7 0.20
19 2 0.06
21 16 0.46
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (21 bp):
GTATCGAGCCTTCCTATAGAA
Found at i:8421525 original size:36 final size:36
Alignment explanation
Indices: 8421478--8421552 Score: 141
Period size: 36 Copynumber: 2.1 Consensus size: 36
8421468 CCTTTCAAGG
8421478 CTAAGGTATCGAGCCTTCCTATAGAAGTATCGAGAC
1 CTAAGGTATCGAGCCTTCCTATAGAAGTATCGAGAC
*
8421514 CTAAGGTATCGAGCCTTCTTATAGAAGTATCGAGAC
1 CTAAGGTATCGAGCCTTCCTATAGAAGTATCGAGAC
8421550 CTA
1 CTA
8421553 TCCAATCAGA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (36 bp):
CTAAGGTATCGAGCCTTCCTATAGAAGTATCGAGAC
Found at i:8425607 original size:14 final size:15
Alignment explanation
Indices: 8425575--8425604 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8425565 AATCATGTTG
8425575 AGTTGTTTTAATTTA
1 AGTTGTTTTAATTTA
*
8425590 AGTTGTTTTATTTTA
1 AGTTGTTTTAATTTA
8425605 GTTTTAGTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.13, T:0.63
Consensus pattern (15 bp):
AGTTGTTTTAATTTA
Found at i:8425624 original size:21 final size:21
Alignment explanation
Indices: 8425600--8425651 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
8425590 AGTTGTTTTA
*
8425600 TTTTAGTTTTAGTTAA-ATTT
1 TTTTAGTTTTAGTCAATATTT
8425620 CTTTTAG-TTTAGTCAATATTT
1 -TTTTAGTTTTAGTCAATATTT
*
8425641 ATTTAGTTTTA
1 TTTTAGTTTTA
8425652 TGCGTTTGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 13 0.48
21 14 0.52
ACGTcount: A:0.25, C:0.04, G:0.10, T:0.62
Consensus pattern (21 bp):
TTTTAGTTTTAGTCAATATTT
Found at i:8430673 original size:15 final size:14
Alignment explanation
Indices: 8430637--8430678 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
8430627 AGCTTTTTCC
8430637 ATTTTCTTTTCTTT
1 ATTTTCTTTTCTTT
**
8430651 CCTTTCTTTTCATTT
1 ATTTTCTTTTC-TTT
8430666 ATTTTCTTTTCTT
1 ATTTTCTTTTCTT
8430679 ACTTCTTTCT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.07, C:0.19, G:0.00, T:0.74
Consensus pattern (14 bp):
ATTTTCTTTTCTTT
Found at i:8441847 original size:55 final size:55
Alignment explanation
Indices: 8441788--8441948 Score: 214
Period size: 55 Copynumber: 2.9 Consensus size: 55
8441778 TGATGACGAG
* * * *
8441788 TGATTCCAGCTATGTGTGGTGTGGGAATGCACATGAGCTGATGACTGGTGGGTGA
1 TGATTCCAGCTATGTGTGGTGTGGGAGTGCACATGAGCTAATGACTGGTGGATAA
* * * **
8441843 TGATTCCAGCTATGTGTCGTGTGAGAGTGCACATGAGCTAATGACCGAAGGATAA
1 TGATTCCAGCTATGTGTGGTGTGGGAGTGCACATGAGCTAATGACTGGTGGATAA
* * *
8441898 TGATTCCAACTATGTGCGGTGTGGGAGTGCACATGAACTAATGACTGGTGG
1 TGATTCCAGCTATGTGTGGTGTGGGAGTGCACATGAGCTAATGACTGGTGG
8441949 TTGCATACAT
Statistics
Matches: 89, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
55 89 1.00
ACGTcount: A:0.24, C:0.15, G:0.34, T:0.27
Consensus pattern (55 bp):
TGATTCCAGCTATGTGTGGTGTGGGAGTGCACATGAGCTAATGACTGGTGGATAA
Found at i:8446275 original size:2 final size:2
Alignment explanation
Indices: 8446268--8446300 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
8446258 ACTTTCTATA
8446268 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
8446301 TATATATATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:8446305 original size:2 final size:2
Alignment explanation
Indices: 8446300--8446328 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8446290 ACACACACAC
8446300 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8446329 CATACATAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8446419 original size:37 final size:37
Alignment explanation
Indices: 8446378--8446570 Score: 291
Period size: 37 Copynumber: 5.2 Consensus size: 37
8446368 AATGCAATAT
* * *
8446378 CATCATTATGTGTGCACTCCCTACTTGCACATTTCAA
1 CATCATCATGTGTGCACTCCCTACTCGCACACTTCAA
8446415 CATCATCATGTGTGCACTCCCTACTCGCACACTTCAA
1 CATCATCATGTGTGCACTCCCTACTCGCACACTTCAA
8446452 CATCATCATGTGTGCACTCCCTACTCGCACAC-TCTAA
1 CATCATCATGTGTGCACTCCCTACTCGCACACTTC-AA
* *
8446489 CATCATCATGTGTGAACTCCCTACTCACACACTTCAA
1 CATCATCATGTGTGCACTCCCTACTCGCACACTTCAA
* *
8446526 CGTCATCATGTGTGCACTCCTTACTCGCACAC-TCTAA
1 CATCATCATGTGTGCACTCCCTACTCGCACACTTC-AA
8446563 CATCATCA
1 CATCATCA
8446571 CACAACATTA
Statistics
Matches: 143, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
36 4 0.03
37 137 0.96
38 2 0.01
ACGTcount: A:0.25, C:0.35, G:0.10, T:0.29
Consensus pattern (37 bp):
CATCATCATGTGTGCACTCCCTACTCGCACACTTCAA
Found at i:8447419 original size:20 final size:21
Alignment explanation
Indices: 8447380--8447420 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
8447370 AGAATAACAA
*
8447380 GAAGCTGCTGGAAAAAATGAG
1 GAAGCTGCTAGAAAAAATGAG
*
8447401 GAAGCTGCTAG-AGAAATGAG
1 GAAGCTGCTAGAAAAAATGAG
8447421 ATATTTATAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.41, C:0.10, G:0.34, T:0.15
Consensus pattern (21 bp):
GAAGCTGCTAGAAAAAATGAG
Found at i:8456412 original size:43 final size:43
Alignment explanation
Indices: 8456248--8456413 Score: 217
Period size: 43 Copynumber: 3.9 Consensus size: 43
8456238 TTGACTCGAC
**
8456248 TATGTGCGAGTAGGGAGTGCGCATAAGATGAG-GATGACCCGGT
1 TATGTGCGAGTAGGGAGTGCGCATAACCTG-GTGATGACCCGGT
8456291 TATGTGCGAGTAGGGAGTGCGCATAACCTGGTGATGACCCGGT
1 TATGTGCGAGTAGGGAGTGCGCATAACCTGGTGATGACCCGGT
* * ***
8456334 TATGTGCGAGTAGGGAGTGCGCATAACCCGATGATGACCCAAC
1 TATGTGCGAGTAGGGAGTGCGCATAACCTGGTGATGACCCGGT
* * * *
8456377 CATGTGCGAGTAGGGAGTGCACATGAGCTGGTGATGA
1 TATGTGCGAGTAGGGAGTGCGCATAACCTGGTGATGA
8456414 TGATGATGAG
Statistics
Matches: 109, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
42 1 0.01
43 108 0.99
ACGTcount: A:0.25, C:0.17, G:0.37, T:0.21
Consensus pattern (43 bp):
TATGTGCGAGTAGGGAGTGCGCATAACCTGGTGATGACCCGGT
Found at i:8456424 original size:20 final size:20
Alignment explanation
Indices: 8456399--8456461 Score: 101
Period size: 20 Copynumber: 3.2 Consensus size: 20
8456389 GGGAGTGCAC
8456399 ATGAGCTGGTGATGATGATG
1 ATGAGCTGGTGATGATGATG
8456419 ATGAGCTGGTGATGATGATG
1 ATGAGCTGGTGATGATGATG
* *
8456439 ATGGGTTGGTGA-GATGATG
1 ATGAGCTGGTGATGATGATG
8456458 ATGA
1 ATGA
8456462 TGGGTATATA
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
19 10 0.25
20 30 0.75
ACGTcount: A:0.25, C:0.03, G:0.41, T:0.30
Consensus pattern (20 bp):
ATGAGCTGGTGATGATGATG
Found at i:8466529 original size:19 final size:18
Alignment explanation
Indices: 8466502--8466540 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 18
8466492 ACGTGAAAAT
8466502 TTTTAGAATAAAATAATA
1 TTTTAGAATAAAATAATA
8466520 TTTTATGAATAAAATAATA
1 TTTTA-GAATAAAATAATA
8466539 TT
1 TT
8466541 AAAATATTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (18 bp):
TTTTAGAATAAAATAATA
Found at i:8467018 original size:5 final size:5
Alignment explanation
Indices: 8467004--8467035 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
8466994 GCTTTTTCCA
*
8467004 TTTTC TTTTC ATTTC TTTTC TTTTC TTTTC TT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TT
8467036 ACTTCTTTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.03, C:0.19, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTC
Found at i:8467599 original size:107 final size:107
Alignment explanation
Indices: 8467434--8467647 Score: 412
Period size: 107 Copynumber: 2.0 Consensus size: 107
8467424 TTAGGCTAAA
8467434 ATGTAGTTTATCAAGCGTATGCTTATTAAAATTATTAAGTTTGAATTTATGATATATTTGAAGCT
1 ATGTAGTTTATCAAGCGTATGCTTATTAAAATTATTAAGTTTGAATTTATGATATATTTGAAGCT
8467499 ATTATTGTTTATTTACAATTATAGG-TTTAATGGTATTTCAG
66 ATTATTGTTTATTTACAATTATAGGTTTTAATGGTATTTCAG
8467540 NATGTAGTTTATCAAGCGTATGCTTATTAAAATTATTAAGTTTGAATTTATGATATATTTGAAGC
1 -ATGTAGTTTATCAAGCGTATGCTTATTAAAATTATTAAGTTTGAATTTATGATATATTTGAAGC
8467605 TATTATTGTTTATTTACAATTATAGGTTTTAATGGTATTTCAG
65 TATTATTGTTTATTTACAATTATAGGTTTTAATGGTATTTCAG
8467648 GGACTACCTG
Statistics
Matches: 106, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
107 90 0.85
108 16 0.15
ACGTcount: A:0.32, C:0.06, G:0.15, T:0.47
Consensus pattern (107 bp):
ATGTAGTTTATCAAGCGTATGCTTATTAAAATTATTAAGTTTGAATTTATGATATATTTGAAGCT
ATTATTGTTTATTTACAATTATAGGTTTTAATGGTATTTCAG
Found at i:8471282 original size:19 final size:19
Alignment explanation
Indices: 8471258--8471295 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
8471248 CCATTTGACT
8471258 TATTGGAGTATGATTTGAG
1 TATTGGAGTATGATTTGAG
8471277 TATTGGAGTATGATTTGAG
1 TATTGGAGTATGATTTGAG
8471296 GTTTAGAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.00, G:0.32, T:0.42
Consensus pattern (19 bp):
TATTGGAGTATGATTTGAG
Found at i:8472547 original size:13 final size:13
Alignment explanation
Indices: 8472529--8472553 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8472519 GGAGAAATTG
8472529 TGATTTTATAAAA
1 TGATTTTATAAAA
8472542 TGATTTTATAAA
1 TGATTTTATAAA
8472554 TTTTCTAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:8473529 original size:17 final size:18
Alignment explanation
Indices: 8473492--8473530 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
8473482 TTAAATAGAA
* *
8473492 TATTTTATTGAATATTAT
1 TATTTTATTCAATACTAT
8473510 TATTTTATTCAA-ACTAT
1 TATTTTATTCAATACTAT
8473527 TATT
1 TATT
8473531 GCAACGACCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.59
Consensus pattern (18 bp):
TATTTTATTCAATACTAT
Found at i:8481283 original size:27 final size:27
Alignment explanation
Indices: 8481249--8481301 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
8481239 TCTACCTTGA
8481249 TCCGACATTCGAACATTTATCCAACCT
1 TCCGACATTCGAACATTTATCCAACCT
8481276 TCCGACATTCGAACATTTATCCAACC
1 TCCGACATTCGAACATTTATCCAACC
8481302 ATTGACTACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.30, C:0.34, G:0.08, T:0.28
Consensus pattern (27 bp):
TCCGACATTCGAACATTTATCCAACCT
Found at i:8493346 original size:2 final size:2
Alignment explanation
Indices: 8493339--8493378 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
8493329 GATGATTTTA
8493339 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8493379 GTGTGTGTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8493383 original size:2 final size:2
Alignment explanation
Indices: 8493378--8493417 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
8493368 TATATATATA
8493378 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
8493418 NNNNNNNNNN
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:8497397 original size:20 final size:21
Alignment explanation
Indices: 8497369--8497407 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
8497359 AACCTAGGTG
*
8497369 AAAATTCAAAGAAA-AAGTGA
1 AAAAATCAAAGAAACAAGTGA
*
8497389 AAAAATCAAGGAAACAAGT
1 AAAAATCAAAGAAACAAGT
8497408 TAGGTAAGTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.64, C:0.08, G:0.15, T:0.13
Consensus pattern (21 bp):
AAAAATCAAAGAAACAAGTGA
Found at i:8503630 original size:19 final size:20
Alignment explanation
Indices: 8503603--8503648 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
8503593 AGGAGACAAG
*
8503603 ATAAAATTTTTA-GAATAAA
1 ATAATATTTTTATGAATAAA
*
8503622 ATAATA-TTTTATTAATAAA
1 ATAATATTTTTATGAATAAA
8503641 ATAATATT
1 ATAATATT
8503649 AAAATATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 5 0.22
19 17 0.74
20 1 0.04
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.43
Consensus pattern (20 bp):
ATAATATTTTTATGAATAAA
Found at i:8505480 original size:13 final size:13
Alignment explanation
Indices: 8505462--8505486 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8505452 AGAGAAATTG
8505462 TGATTTTATAAAA
1 TGATTTTATAAAA
8505475 TGATTTTATAAA
1 TGATTTTATAAA
8505487 TTTTCTGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:8510225 original size:2 final size:2
Alignment explanation
Indices: 8510218--8510258 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
8510208 CATGCACAAC
*
8510218 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT CT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8510259 CCAACATAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8511753 original size:46 final size:45
Alignment explanation
Indices: 8511672--8511762 Score: 128
Period size: 45 Copynumber: 2.0 Consensus size: 45
8511662 GAAAAAGTTA
* * *
8511672 AAACTTAAACTACTCTCATTCTCCAAGAAATTACCTTTTATAATT
1 AAACCTAAACTACTCTCACTCTCCAAAAAATTACCTTTTATAATT
* *
8511717 AAACCTAAACTACTCTCCCTCTCTAAAAATATTACCTTTTATAATT
1 AAACCTAAACTACTCTCACTCTCCAAAAA-ATTACCTTTTATAATT
8511763 TAATTTTTAT
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
45 24 0.60
46 16 0.40
ACGTcount: A:0.37, C:0.24, G:0.01, T:0.37
Consensus pattern (45 bp):
AAACCTAAACTACTCTCACTCTCCAAAAAATTACCTTTTATAATT
Found at i:8527461 original size:144 final size:145
Alignment explanation
Indices: 8527173--8527461 Score: 320
Period size: 144 Copynumber: 2.0 Consensus size: 145
8527163 CATCAAGAAA
*
8527173 AATTGCAGACGAAATATGAATTGTAACATTTTGAACTTGACATTAGGCGAGATCCATGCTTGCAA
1 AATTGCAGACGAAATATGAATTGGAACATTTTGAACTTGACATTAGGCGAGATCCATGCTTGCAA
* * ** *
8527238 AGTGTTTTAACTCTCTCAAATCTATACCAGTTAATGTTAAAGGTAGAAAAATCAATTGTGAATCT
66 AGTGTTTCAACTCTCTCAAATCTATACCAGTTAATGTCAAAGACAGAAAAATCAATTATGAATCT
* *
8527303 TCTCCTAGATCATTT
131 TCTCCAAAATCATTT
* * ** * * *
8527318 AATTGCATATGAAATATGAATTGGGGC-TTTTGAACTTGATATT-GAGCTAGATCCATGTTTGCA
1 AATTGCAGACGAAATATGAATTGGAACATTTTGAACTTGACATTAG-GCGAGATCCATGCTTGCA
* * *
8527381 AAGTGTTTCAACTCTTTCAGAGT-TATGCCAGTTAATGTCAAAGACAGAAAATAT-AATTAT-AT
65 AAGTGTTTCAACTCTCTCA-AATCTATACCAGTTAATGTCAAAGACAGAAAA-ATCAATTATGA-
*
8527443 ATCCTT-TTCAAAATCATTT
127 AT-CTTCTCCAAAATCATTT
8527462 GGTTTGACTT
Statistics
Matches: 120, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
143 2 0.02
144 89 0.74
145 29 0.24
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (145 bp):
AATTGCAGACGAAATATGAATTGGAACATTTTGAACTTGACATTAGGCGAGATCCATGCTTGCAA
AGTGTTTCAACTCTCTCAAATCTATACCAGTTAATGTCAAAGACAGAAAAATCAATTATGAATCT
TCTCCAAAATCATTT
Found at i:8530752 original size:20 final size:21
Alignment explanation
Indices: 8530724--8530762 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
8530714 AAGAAGTAAA
*
8530724 ATTTTTATT-TAATTTTTTCT
1 ATTTATATTATAATTTTTTCT
*
8530744 ATTTATATTATTATTTTTT
1 ATTTATATTATAATTTTTT
8530763 TTTCAATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (21 bp):
ATTTATATTATAATTTTTTCT
Found at i:8540073 original size:2 final size:2
Alignment explanation
Indices: 8540066--8540120 Score: 83
Period size: 2 Copynumber: 27.5 Consensus size: 2
8540056 TGAATATTTT
* * *
8540066 AG AG AG AG AA AG AG AG AG AG AG AG AG AG AG AG AG AA AG AG AA
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
8540108 AG AG AG AG AG AG A
1 AG AG AG AG AG AG A
8540121 CTTTCCATAA
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.56, C:0.00, G:0.44, T:0.00
Consensus pattern (2 bp):
AG
Found at i:8545837 original size:27 final size:28
Alignment explanation
Indices: 8545796--8545863 Score: 93
Period size: 27 Copynumber: 2.5 Consensus size: 28
8545786 TAGTCCAAGC
* * *
8545796 TACACGCTATATTGAAAAAAATA-TTGT
1 TACACACTATGTTGAAAAAAAAAGTTGT
8545823 TACACACTATGTTGAAAAAAAAAGTTGT
1 TACACACTATGTTGAAAAAAAAAGTTGT
*
8545851 TACACACCATGTT
1 TACACACTATGTT
8545864 TAAGGTGTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
27 20 0.56
28 16 0.44
ACGTcount: A:0.43, C:0.15, G:0.12, T:0.31
Consensus pattern (28 bp):
TACACACTATGTTGAAAAAAAAAGTTGT
Found at i:8545843 original size:154 final size:154
Alignment explanation
Indices: 8545546--8545852 Score: 379
Period size: 154 Copynumber: 2.0 Consensus size: 154
8545536 CATATTCAAG
* * *
8545546 CGCAAGTGTTGAAAAAAAAAGTTGTTACATATCATGTTTAAGGTGTTTAACTCTAAGAGTTTATA
1 CGCAAGTGTTGAAAAAAAAAGTTGTTACACATCATGTTTAAGGTGTTTAACTATAAGAGCTTATA
* * * *
8545611 TCTTAATGAAATACAAAGATAGAGACCAAGTTATACACGATGTTTAAAAAATAATGTAGTTACAC
66 TCATAATGAAATACAAAAATAGAGACCAAG-TATACACGATATTTAAAAAATAATATAGTTACAC
*
8545676 ACCATATTCAAAAAAATGTTGTTAGA
130 ACCATATT-AAAAAAAAGTTGTTAGA
*
8545702 CGCAA-TGTTGAAAAAAAAA-TTGTTACACATCATGTTTAAGGTGTTTAACTATAAGAGCTTATG
1 CGCAAGTGTTGAAAAAAAAAGTTGTTACACATCATGTTTAAGGTGTTTAACTATAAGAGCTTATA
* * * * * * *
8545765 TCATAGTGAAATACAAAAATATAGTCCAAG-CTACACGCTATATTGAAAAA-AATATTGTTACAC
66 TCATAATGAAATACAAAAATAGAGACCAAGTATACACGATAT-TTAAAAAATAATATAGTTACAC
* *
8545828 ACTATGTTGAAAAAAAAAGTTGTTA
130 ACCATATT--AAAAAAAAGTTGTTA
8545853 CACACCATGT
Statistics
Matches: 130, Mismatches: 19, Indels: 7
0.83 0.12 0.04
Matches are distributed among these distances:
152 25 0.19
153 21 0.16
154 65 0.50
155 14 0.11
156 5 0.04
ACGTcount: A:0.43, C:0.11, G:0.15, T:0.31
Consensus pattern (154 bp):
CGCAAGTGTTGAAAAAAAAAGTTGTTACACATCATGTTTAAGGTGTTTAACTATAAGAGCTTATA
TCATAATGAAATACAAAAATAGAGACCAAGTATACACGATATTTAAAAAATAATATAGTTACACA
CCATATTAAAAAAAAGTTGTTAGA
Found at i:8545898 original size:126 final size:125
Alignment explanation
Indices: 8545679--8545907 Score: 323
Period size: 126 Copynumber: 1.8 Consensus size: 125
8545669 GTTACACACC
* * * *
8545679 ATATTCAAAAAAATGTTGTTAGACGCAATGTTGAAAAAAAAATTGTTACACATCATGTTTAAGGT
1 ATATTCAAAAAAATATTGTTACACACAATGTTGAAAAAAAAATTGTTACACACCATGTTTAAGGT
* * * *
8545744 GTTTAACTATAAGAGCTTATGTCATAGTGAAATACAAAAATATAGTCCAAGCTACACGCT
66 GTTTAACTACAAAAACTTATATCATAGTGAAATACAAAAATATAGTCCAAGCTACACGCT
* *
8545804 ATATTGAAAAAAATATTGTTACACACTATGTTGAAAAAAAAAGTTGTTACACACCATGTTTAAGG
1 ATATTCAAAAAAATATTGTTACACACAATGTTGAAAAAAAAA-TTGTTACACACCATGTTTAAGG
* * * *
8545869 TGTTTAATTGCAAAAATTTATATCTTAGTGAAATACAAA
65 TGTTTAACTACAAAAACTTATATCATAGTGAAATACAAA
8545908 GATAGAGACA
Statistics
Matches: 89, Mismatches: 14, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
125 37 0.42
126 52 0.58
ACGTcount: A:0.43, C:0.11, G:0.14, T:0.32
Consensus pattern (125 bp):
ATATTCAAAAAAATATTGTTACACACAATGTTGAAAAAAAAATTGTTACACACCATGTTTAAGGT
GTTTAACTACAAAAACTTATATCATAGTGAAATACAAAAATATAGTCCAAGCTACACGCT
Found at i:8545942 original size:126 final size:124
Alignment explanation
Indices: 8545671--8545950 Score: 301
Period size: 126 Copynumber: 2.2 Consensus size: 124
8545661 ATAATGTAGT
* * * * *
8545671 TACACACCATATTCAAAAAAATGTTGTTAGACGCAATGTTGAAAAAAAAATTGTTACACATCATG
1 TACACGCCATATT-AAAAAAATATTGTTACACACAATGTTGAAAAAAAAATTGTTACACACCATG
* * * * * *
8545736 TTTAAGGTGTTTAACTATAAGAGCTTATGTCATAGTGAAATACAAAAATATAGTCCAAGC
65 TTTAAGGTGTTTAACTACAAAAACTTATATCATAGTGAAATACAAAAATAGAGTACAAGC
* *
8545796 TACACGCTATATTGAAAAAAATATTGTTACACACTATGTTGAAAAAAAAAGTTGTTACACACCAT
1 TACACGCCATATT-AAAAAAATATTGTTACACACAATGTTGAAAAAAAAA-TTGTTACACACCAT
* * * * * *
8545861 GTTTAAGGTGTTTAATTGCAAAAATTTATATCTTAGTGAAATACAAAGATAGAG-ACAACGT
64 GTTTAAGGTGTTTAACTACAAAAACTTATATCATAGTGAAATACAAAAATAGAGTACAA-GC
* * *
8545922 TACATGTCACATATTTAAAAAATACTGTT
1 TACACG-C-CATATTAAAAAAATATTGTT
8545951 GCTACATGCC
Statistics
Matches: 127, Mismatches: 24, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
125 46 0.36
126 63 0.50
127 13 0.10
128 5 0.04
ACGTcount: A:0.42, C:0.13, G:0.14, T:0.31
Consensus pattern (124 bp):
TACACGCCATATTAAAAAAATATTGTTACACACAATGTTGAAAAAAAAATTGTTACACACCATGT
TTAAGGTGTTTAACTACAAAAACTTATATCATAGTGAAATACAAAAATAGAGTACAAGC
Found at i:8546096 original size:15 final size:15
Alignment explanation
Indices: 8546076--8546105 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8546066 TAGAGACCAA
*
8546076 GTTACATGCCATGTT
1 GTTACACGCCATGTT
8546091 GTTACACGCCATGTT
1 GTTACACGCCATGTT
8546106 TGAGTTATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.37
Consensus pattern (15 bp):
GTTACACGCCATGTT
Found at i:8546157 original size:86 final size:86
Alignment explanation
Indices: 8546012--8546176 Score: 242
Period size: 86 Copynumber: 1.9 Consensus size: 86
8546002 GTTATTATAT
* * * *
8546012 GCCATGTTTAAGGTGTTTAACTCCAAGAGATTATGTCTTTGTGAGAAACAAAGATAGAGACCAAG
1 GCCATGTTTAAGGTATTTAACTCCAAAAGATTATGTCCTTGTGAGAAACAAAAATAGAGACCAAG
8546077 TTACATGCCATGTTGTTACAC
66 TTACATGCCATGTTGTTACAC
* * * *
8546098 GCCATGTTTGAGTTATTTAACTTCAAAAGATTATGTCCTTGTGA-AATACAAAAATAGAGATCAA
1 GCCATGTTTAAGGTATTTAACTCCAAAAGATTATGTCCTTGTGAGAA-ACAAAAATAGAGACCAA
8546162 GTTACATGCCATGTT
65 GTTACATGCCATGTT
8546177 TAAACCATGC
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
85 2 0.03
86 68 0.97
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.32
Consensus pattern (86 bp):
GCCATGTTTAAGGTATTTAACTCCAAAAGATTATGTCCTTGTGAGAAACAAAAATAGAGACCAAG
TTACATGCCATGTTGTTACAC
Found at i:8547844 original size:15 final size:15
Alignment explanation
Indices: 8547803--8547848 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
8547793 GTGAAGGGAC
8547803 TAAATTGAACAAAAT
1 TAAATTGAACAAAAT
** * *
8547818 TAAAGGGTACAAGAT
1 TAAATTGAACAAAAT
8547833 TAAATTGAACAAAAT
1 TAAATTGAACAAAAT
8547848 T
1 T
8547849 CAAGAGTTCT
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.54, C:0.07, G:0.13, T:0.26
Consensus pattern (15 bp):
TAAATTGAACAAAAT
Found at i:8557575 original size:31 final size:31
Alignment explanation
Indices: 8557539--8557616 Score: 111
Period size: 31 Copynumber: 2.5 Consensus size: 31
8557529 AAAGAAATAT
* *
8557539 ATGTTGTTACACGCTATGCATACCAAGCAAA
1 ATGTTGTTACACGCCATGCAGACCAAGCAAA
* *
8557570 ATGTTGTTACATGCCATGCAGACCAAGTAAA
1 ATGTTGTTACACGCCATGCAGACCAAGCAAA
*
8557601 ATGTTGTAACACGCCA
1 ATGTTGTTACACGCCA
8557617 ACCCATGGCA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.26
Consensus pattern (31 bp):
ATGTTGTTACACGCCATGCAGACCAAGCAAA
Found at i:8557851 original size:24 final size:25
Alignment explanation
Indices: 8557796--8557863 Score: 93
Period size: 24 Copynumber: 2.7 Consensus size: 25
8557786 ACCAAGTAAA
*
8557796 ATGTTGTGACACGCCAATGCTAAGCC
1 ATGTTGTGACACGCCAA-CCTAAGCC
* *
8557822 ATGTTGTGACATGCCAACCT-TGCC
1 ATGTTGTGACACGCCAACCTAAGCC
8557846 ATGTTGTGACACGCCAAC
1 ATGTTGTGACACGCCAAC
8557864 TATAATTACT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
24 20 0.53
25 2 0.05
26 16 0.42
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (25 bp):
ATGTTGTGACACGCCAACCTAAGCC
Found at i:8558587 original size:23 final size:23
Alignment explanation
Indices: 8558529--8558587 Score: 73
Period size: 23 Copynumber: 2.6 Consensus size: 23
8558519 TGTCACATGT
* *
8558529 ATTCTCACCATGACGAGTTACAA
1 ATTCTCACCATGTCGAGTCACAA
* *
8558552 ATTCTCACCATGTCGTGTCACAC
1 ATTCTCACCATGTCGAGTCACAA
*
8558575 ATTCTCAGCATGT
1 ATTCTCACCATGT
8558588 TGTCTCATAG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.31
Consensus pattern (23 bp):
ATTCTCACCATGTCGAGTCACAA
Found at i:8558601 original size:23 final size:23
Alignment explanation
Indices: 8558529--8558609 Score: 63
Period size: 23 Copynumber: 3.5 Consensus size: 23
8558519 TGTCACATGT
* ** * *
8558529 ATTCTCACCATGACGAGTTACAA
1 ATTCTCACCATGTCGTCTCACAC
*
8558552 ATTCTCACCATGTCGTGTCACAC
1 ATTCTCACCATGTCGTCTCACAC
* * * *
8558575 ATTCTCAGCATGTTGTCTCATAG
1 ATTCTCACCATGTCGTCTCACAC
*
8558598 ATTCTTACCATG
1 ATTCTCACCATG
8558610 GCATGTCACA
Statistics
Matches: 47, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.26, C:0.27, G:0.14, T:0.33
Consensus pattern (23 bp):
ATTCTCACCATGTCGTCTCACAC
Found at i:8558677 original size:23 final size:23
Alignment explanation
Indices: 8558646--8558833 Score: 113
Period size: 23 Copynumber: 8.4 Consensus size: 23
8558636 GTGTCACAGT
*
8558646 CGTGCCACATATTCTCACCATGG
1 CGTGTCACATATTCTCACCATGG
* *
8558669 TGTGTCACATATTCACACCATGG
1 CGTGTCACATATTCTCACCATGG
* * * *
8558692 CATGTCACATACTCACACCATGA
1 CGTGTCACATATTCTCACCATGG
* *
8558715 CGTG-C-CATATTCTTA-TACTGG
1 CGTGTCACATATTCTCACCA-TGG
*
8558736 CGTGTCATC-TATTCTCACCATGT
1 CGTGTCA-CATATTCTCACCATGG
* **
8558759 CGTCTCACATATTC-CTTTCAT-G
1 CGTGTCACATATTCTC-ACCATGG
* * *
8558781 -G-GTCACATATTTTCACCCTGC
1 CGTGTCACATATTCTCACCATGG
* **
8558802 CGTGTCACATATTCCCTTCATGG
1 CGTGTCACATATTCTCACCATGG
*
8558825 TGTGTCACA
1 CGTGTCACA
8558834 AACTCTAAAC
Statistics
Matches: 121, Mismatches: 33, Indels: 22
0.69 0.19 0.12
Matches are distributed among these distances:
20 12 0.10
21 15 0.12
22 5 0.04
23 87 0.72
24 2 0.02
ACGTcount: A:0.22, C:0.30, G:0.15, T:0.33
Consensus pattern (23 bp):
CGTGTCACATATTCTCACCATGG
Found at i:8558901 original size:23 final size:23
Alignment explanation
Indices: 8558860--8558903 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
8558850 GTGTCATAGT
**
8558860 CGTGTCACACATTTTCACCATAC
1 CGTGTCACACATTCCCACCATAC
8558883 CGTGTCACACATTCCCACCAT
1 CGTGTCACACATTCCCACCAT
8558904 GCCAATTCAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.25, C:0.39, G:0.09, T:0.27
Consensus pattern (23 bp):
CGTGTCACACATTCCCACCATAC
Found at i:8558917 original size:81 final size:81
Alignment explanation
Indices: 8558829--8558987 Score: 219
Period size: 81 Copynumber: 2.0 Consensus size: 81
8558819 TCATGGTGTG
** * *
8558829 TCACAAACTCTAAACCCTGTTGTGTCATAGTCGTGTCACACATTTTCACCATACCGTGTCACACA
1 TCACAAACTCTAAACCCTACTGTGTCATAGTCGTGTCACACATTCTCACCATACCATGTCACACA
8558894 TTCCCACCATGCCAAT
66 TTCCCACCATGCCAAT
* * * * * *
8558910 TCACAAACTCTAAGCCCTACTGTGTTATAGTTGTGTCATACATTCTCACCATGCCATGTCACATA
1 TCACAAACTCTAAACCCTACTGTGTCATAGTCGTGTCACACATTCTCACCATACCATGTCACACA
*
8558975 TTCTCACCATGCC
66 TTCCCACCATGCC
8558988 GTGTAACACG
Statistics
Matches: 67, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 67 1.00
ACGTcount: A:0.26, C:0.32, G:0.11, T:0.30
Consensus pattern (81 bp):
TCACAAACTCTAAACCCTACTGTGTCATAGTCGTGTCACACATTCTCACCATACCATGTCACACA
TTCCCACCATGCCAAT
Found at i:8558977 original size:23 final size:23
Alignment explanation
Indices: 8558943--8559073 Score: 102
Period size: 23 Copynumber: 5.7 Consensus size: 23
8558933 GTTATAGTTG
*
8558943 TGTCATACATTCTCACCATGCCA
1 TGTCACACATTCTCACCATGCCA
* *
8558966 TGTCACATATTCTCACCATGCCG
1 TGTCACACATTCTCACCATGCCA
* * * *
8558989 TGTAACACGTTCTCTCCAT-ACA
1 TGTCACACATTCTCACCATGCCA
* * *
8559011 GTGTCATAGATTCTCACCATGCCG
1 -TGTCACACATTCTCACCATGCCA
* * * *
8559035 TGTCACACGTTCTCTCCATACAA
1 TGTCACACATTCTCACCATGCCA
* *
8559058 TGTCATAGATTCTCAC
1 TGTCACACATTCTCAC
8559074 TGTCACGACC
Statistics
Matches: 79, Mismatches: 27, Indels: 4
0.72 0.25 0.04
Matches are distributed among these distances:
22 1 0.01
23 77 0.97
24 1 0.01
ACGTcount: A:0.24, C:0.32, G:0.12, T:0.31
Consensus pattern (23 bp):
TGTCACACATTCTCACCATGCCA
Found at i:8559024 original size:46 final size:46
Alignment explanation
Indices: 8558965--8559073 Score: 182
Period size: 46 Copynumber: 2.4 Consensus size: 46
8558955 TCACCATGCC
* *
8558965 ATGTCACATATTCTCACCATGCCGTGTAACACGTTCTCTCCATACA
1 ATGTCATAGATTCTCACCATGCCGTGTAACACGTTCTCTCCATACA
* *
8559011 GTGTCATAGATTCTCACCATGCCGTGTCACACGTTCTCTCCATACA
1 ATGTCATAGATTCTCACCATGCCGTGTAACACGTTCTCTCCATACA
8559057 ATGTCATAGATTCTCAC
1 ATGTCATAGATTCTCAC
8559074 TGTCACGACC
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 58 1.00
ACGTcount: A:0.25, C:0.31, G:0.13, T:0.31
Consensus pattern (46 bp):
ATGTCATAGATTCTCACCATGCCGTGTAACACGTTCTCTCCATACA
Found at i:8559909 original size:20 final size:20
Alignment explanation
Indices: 8559848--8559910 Score: 83
Period size: 20 Copynumber: 3.2 Consensus size: 20
8559838 TATATACCCA
8559848 TCATCATCATC-TCACCAAC
1 TCATCATCATCATCACCAAC
* * *
8559867 CCATTACCATCATCACCAAC
1 TCATCATCATCATCACCAAC
*
8559887 TCATCATCATCATCACCAGC
1 TCATCATCATCATCACCAAC
8559907 TCAT
1 TCAT
8559911 GCGCACTCAT
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
19 8 0.22
20 28 0.78
ACGTcount: A:0.32, C:0.41, G:0.02, T:0.25
Consensus pattern (20 bp):
TCATCATCATCATCACCAAC
Found at i:8559982 original size:43 final size:43
Alignment explanation
Indices: 8559896--8560069 Score: 219
Period size: 43 Copynumber: 4.1 Consensus size: 43
8559886 CTCATCATCA
* * ** *
8559896 TCATCACCAGCTCATGCGCACT-CATACTCGCACATGGCTGGG
1 TCATCACCAGCTTATGCGCACTCCCTACTCGCACATAACCGGG
8559938 TCATCACCGAG-TTATGCGCACTCCCTACTCGCACATAACCGGG
1 TCATCACC-AGCTTATGCGCACTCCCTACTCGCACATAACCGGG
* * *
8559981 TCATCACCGGGTTATGCGCACTCCCTACTCGCACATAACCAGG
1 TCATCACCAGCTTATGCGCACTCCCTACTCGCACATAACCGGG
* *
8560024 TCATC-CTCAGCTTATGCGCACTCCCTACTCGCACATAGCCGAG
1 TCATCAC-CAGCTTATGCGCACTCCCTACTCGCACATAACCGGG
8560067 TCA
1 TCA
8560070 ACATAATTAC
Statistics
Matches: 116, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
42 20 0.17
43 96 0.83
ACGTcount: A:0.22, C:0.37, G:0.18, T:0.22
Consensus pattern (43 bp):
TCATCACCAGCTTATGCGCACTCCCTACTCGCACATAACCGGG
Found at i:8580540 original size:49 final size:49
Alignment explanation
Indices: 8580478--8580619 Score: 200
Period size: 49 Copynumber: 2.9 Consensus size: 49
8580468 ATTACATTAG
* * *
8580478 CTTATGCGCACTCCCTACTCACACATAGTCGGGTCATCATCATCATCGA
1 CTTATGCTCACTCCCTACTCGCACATAGCCGGGTCATCATCATCATCGA
*
8580527 CTTATGCTTACTCCCTACTCGCACATAGCCGGGTCATCATCATCATCGA
1 CTTATGCTCACTCCCTACTCGCACATAGCCGGGTCATCATCATCATCGA
*
8580576 CTTATG-TGCACTCCTTACTCGCAC-TAGCCGGGTCAAT-ATCATCA
1 CTTATGCT-CACTCCCTACTCGCACATAGCCGGGTC-ATCATCATCA
8580620 CACAACATTA
Statistics
Matches: 85, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
48 18 0.21
49 67 0.79
ACGTcount: A:0.23, C:0.34, G:0.15, T:0.28
Consensus pattern (49 bp):
CTTATGCTCACTCCCTACTCGCACATAGCCGGGTCATCATCATCATCGA
Found at i:8601703 original size:37 final size:37
Alignment explanation
Indices: 8601662--8601776 Score: 160
Period size: 37 Copynumber: 3.1 Consensus size: 37
8601652 CATATGCATT
* *
8601662 CATCATCATGTGTGCACTCCTTACTTGCACACTTCAA
1 CATCATCATGTGTGCACTCCCTACTCGCACACTTCAA
8601699 CATCATCATGTGTGCACTCCCTACTCGCACAC-TCTAA
1 CATCATCATGTGTGCACTCCCTACTCGCACACTTC-AA
** * *
8601736 CATCATCATGTGTAAACTCCCGACTCACACACTTCAA
1 CATCATCATGTGTGCACTCCCTACTCGCACACTTCAA
8601773 CATC
1 CATC
8601777 CTTACACAAC
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
36 2 0.03
37 66 0.94
38 2 0.03
ACGTcount: A:0.27, C:0.36, G:0.10, T:0.28
Consensus pattern (37 bp):
CATCATCATGTGTGCACTCCCTACTCGCACACTTCAA
Found at i:8604180 original size:19 final size:19
Alignment explanation
Indices: 8604144--8604183 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
8604134 ACACATTCTT
* * *
8604144 CAAACACAGACCAGAAAAA
1 CAAACACAAACAAAAAAAA
8604163 CAAACACAAACAAAAAAAA
1 CAAACACAAACAAAAAAAA
8604182 CA
1 CA
8604184 CATTGTTCTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.70, C:0.25, G:0.05, T:0.00
Consensus pattern (19 bp):
CAAACACAAACAAAAAAAA
Found at i:8615469 original size:43 final size:43
Alignment explanation
Indices: 8615398--8615545 Score: 183
Period size: 43 Copynumber: 3.4 Consensus size: 43
8615388 TTATGTGCAA
* *
8615398 TAATGATGACCCAGCTATGTTCGATGTGGGAGTGCACATGAGC
1 TAATGATGACCCAGCTATGTCCGGTGTGGGAGTGCACATGAGC
* *
8615441 TGATAATGACCCAGCTATGTCCGGTGTGGGAGTGCACATGAGC
1 TAATGATGACCCAGCTATGTCCGGTGTGGGAGTGCACATGAGC
* ** *
8615484 TAATGATAACCC-GACTATGAGCGAGT-AGGGAGTGCACATGAGC
1 TAATGATGACCCAG-CTATGTCCG-GTGTGGGAGTGCACATGAGC
*
8615527 TAATGATGACCCCGCTATG
1 TAATGATGACCCAGCTATG
8615546 CGTGAGTAGG
Statistics
Matches: 91, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
42 1 0.01
43 87 0.96
44 3 0.03
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (43 bp):
TAATGATGACCCAGCTATGTCCGGTGTGGGAGTGCACATGAGC
Found at i:8615553 original size:43 final size:42
Alignment explanation
Indices: 8615398--8615565 Score: 180
Period size: 43 Copynumber: 3.9 Consensus size: 42
8615388 TTATGTGCAA
*
8615398 TAATGATGACCCAGCTATG-TTCGATGTGGGAGTGCACATGAGC
1 TAATGATGACCCAGCTATGCGT-GA-GTGGGAGTGCACATGAGC
* * *
8615441 TGATAATGACCCAGCTATGTCCG-GTGTGGGAGTGCACATGAGC
1 TAATGATGACCCAGCTATG--CGTGAGTGGGAGTGCACATGAGC
* * *
8615484 TAATGATAACCC-GACTATGAGCGAGTAGGGAGTGCACATGAGC
1 TAATGATGACCCAG-CTATGCGTGAGT-GGGAGTGCACATGAGC
*
8615527 TAATGATGACCCCGCTATGCGTGAGTAGGGAGTGCACAT
1 TAATGATGACCCAGCTATGCGTGAGT-GGGAGTGCACAT
8615566 AATGATGATA
Statistics
Matches: 106, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
41 1 0.01
42 4 0.04
43 99 0.93
44 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.23
Consensus pattern (42 bp):
TAATGATGACCCAGCTATGCGTGAGTGGGAGTGCACATGAGC
Found at i:8618609 original size:19 final size:19
Alignment explanation
Indices: 8618565--8618610 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
8618555 TTCCTTTCCC
* *
8618565 TTTCTCCTTTCTTTCTTTTC
1 TTTCT-CTTTCTCTCTTTTA
*
8618585 TCTCTCTTTCTCTCTTTTA
1 TTTCTCTTTCTCTCTTTTA
8618604 TTTCTCT
1 TTTCTCT
8618611 CGGGTGGAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 18 0.82
20 4 0.18
ACGTcount: A:0.02, C:0.30, G:0.00, T:0.67
Consensus pattern (19 bp):
TTTCTCTTTCTCTCTTTTA
Found at i:8620585 original size:17 final size:19
Alignment explanation
Indices: 8620552--8620586 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
8620542 TTTACTCTTA
8620552 CATCTTGATCATATTATTT
1 CATCTTGATCATATTATTT
8620571 CATCTTGA-C-TATTATT
1 CATCTTGATCATATTATT
8620587 CTGGAATTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 1 0.06
19 8 0.50
ACGTcount: A:0.26, C:0.17, G:0.06, T:0.51
Consensus pattern (19 bp):
CATCTTGATCATATTATTT
Found at i:8626040 original size:21 final size:20
Alignment explanation
Indices: 8626016--8626060 Score: 63
Period size: 21 Copynumber: 2.2 Consensus size: 20
8626006 AAGCTTTTCC
8626016 TCTCCTTCCTTCCTTCCTCTT
1 TCTCCTTCCTTCCTT-CTCTT
* *
8626037 TCTCCTTTCTTTCTTCTCTT
1 TCTCCTTCCTTCCTTCTCTT
8626057 TCTC
1 TCTC
8626061 TTTCTCACTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 9 0.41
21 13 0.59
ACGTcount: A:0.00, C:0.42, G:0.00, T:0.58
Consensus pattern (20 bp):
TCTCCTTCCTTCCTTCTCTT
Found at i:8626081 original size:27 final size:26
Alignment explanation
Indices: 8626024--8626089 Score: 73
Period size: 26 Copynumber: 2.5 Consensus size: 26
8626014 CCTCTCCTTC
* *
8626024 CTTC-CTTCCTCTTTCTCCTTTCTTT
1 CTTCTCTTTCTCTTTCTCCTTTATTT
8626049 CTTCTCTTTCTCTTTCTCACTTTTATTT
1 CTTCTCTTTCTCTTTCTC-C-TTTATTT
*
8626077 C-TCTCTTTTTCTT
1 CTTCTCTTTCTCTT
8626090 ACTCTCAAGT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
25 4 0.11
26 12 0.34
27 12 0.34
28 7 0.20
ACGTcount: A:0.03, C:0.33, G:0.00, T:0.64
Consensus pattern (26 bp):
CTTCTCTTTCTCTTTCTCCTTTATTT
Found at i:8630588 original size:55 final size:55
Alignment explanation
Indices: 8630500--8630651 Score: 169
Period size: 55 Copynumber: 2.8 Consensus size: 55
8630490 CAACCACCGA
* ** * * ** **
8630500 TCATCAGCACATGTGCACTCCCACACCGTACATAGCTGGAATCATCATCGTCTGG
1 TCATCAGCTCATGTGCACTCCCACACCACACATAGCTAGAATCATCACCCACCAG
* *
8630555 TCATCAGCTCATGTTCACTCCTACACCACACATAGCTAGAATCATCACCCACCAG
1 TCATCAGCTCATGTGCACTCCCACACCACACATAGCTAGAATCATCACCCACCAG
* * **
8630610 TCATCAGCTCATGTGCACTCTCACATCGTACATAGCTAGAAT
1 TCATCAGCTCATGTGCACTCCCACACCACACATAGCTAGAAT
8630652 TACCTATCAT
Statistics
Matches: 80, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
55 80 1.00
ACGTcount: A:0.28, C:0.34, G:0.14, T:0.24
Consensus pattern (55 bp):
TCATCAGCTCATGTGCACTCCCACACCACACATAGCTAGAATCATCACCCACCAG
Found at i:8636510 original size:37 final size:37
Alignment explanation
Indices: 8636453--8636562 Score: 166
Period size: 37 Copynumber: 3.0 Consensus size: 37
8636443 CATATACATA
* * * *
8636453 CATCGTCATCATGTGCGCACTCGCTACTCACACACTC
1 CATCATCATCATGTGTGCACTCCCTACTCGCACACTC
* *
8636490 TATTATCATCATGTGTGCACTCCCTACTCGCACACTC
1 CATCATCATCATGTGTGCACTCCCTACTCGCACACTC
8636527 CATCATCATCATGTGTGCACTCCCTACTCGCACACT
1 CATCATCATCATGTGTGCACTCCCTACTCGCACACT
8636563 TTAACATCAC
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.22, C:0.38, G:0.12, T:0.28
Consensus pattern (37 bp):
CATCATCATCATGTGTGCACTCCCTACTCGCACACTC
Found at i:8642046 original size:20 final size:19
Alignment explanation
Indices: 8642018--8642055 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
8642008 TTTATAAATC
8642018 ATTTTGAAATTGAATAATG
1 ATTTTGAAATTGAATAATG
*
8642037 ATTTTAGAAATTGAGTAAT
1 ATTTT-GAAATTGAATAAT
8642056 TGGAGATTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.42, C:0.00, G:0.16, T:0.42
Consensus pattern (19 bp):
ATTTTGAAATTGAATAATG
Found at i:8651339 original size:35 final size:35
Alignment explanation
Indices: 8651293--8651370 Score: 120
Period size: 35 Copynumber: 2.2 Consensus size: 35
8651283 GCTTTAACTA
*
8651293 CTGATTTTGAAGGCTGAAAGGTGCAATTTTGGTTG
1 CTGATTTTGAAGGCTGAAAGGTACAATTTTGGTTG
* *
8651328 CTGATTTTGAAGGTTGAAAGGTACGATTTTGGTTG
1 CTGATTTTGAAGGCTGAAAGGTACAATTTTGGTTG
*
8651363 CTAATTTT
1 CTGATTTT
8651371 TGTAGCTTTG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.23, C:0.08, G:0.28, T:0.41
Consensus pattern (35 bp):
CTGATTTTGAAGGCTGAAAGGTACAATTTTGGTTG
Found at i:8651619 original size:17 final size:19
Alignment explanation
Indices: 8651585--8651635 Score: 51
Period size: 15 Copynumber: 3.0 Consensus size: 19
8651575 TGATCTGCGG
*
8651585 GAGAGAAGAGGAAGAGAAA
1 GAGAGAAGAGGAAAAGAAA
8651604 GAGAGAA-A-GAAAAGAAA
1 GAGAGAAGAGGAAAAGAAA
8651621 -A-A-AAGA-GAAAAGAAA
1 GAGAGAAGAGGAAAAGAAA
8651636 AAAAAATTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
14 2 0.07
15 11 0.37
16 1 0.03
17 8 0.27
18 1 0.03
19 7 0.23
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (19 bp):
GAGAGAAGAGGAAAAGAAA
Found at i:8651631 original size:15 final size:15
Alignment explanation
Indices: 8651611--8651639 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8651601 AAAGAGAGAA
8651611 AGAAAAGAAAAAAAG
1 AGAAAAGAAAAAAAG
8651626 AGAAAAGAAAAAAA
1 AGAAAAGAAAAAAA
8651640 AATTTATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (15 bp):
AGAAAAGAAAAAAAG
Found at i:8651632 original size:20 final size:20
Alignment explanation
Indices: 8651601--8651641 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
8651591 AGAGGAAGAG
8651601 AAAGAGAGAAAGAAAAGAAAA
1 AAAGAGAGAAAGAAAA-AAAA
8651622 AAAGAGA-AAAGAAAAAAAA
1 AAAGAGAGAAAGAAAAAAAA
8651641 A
1 A
8651642 TTTATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 5 0.25
20 8 0.40
21 7 0.35
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (20 bp):
AAAGAGAGAAAGAAAAAAAA
Found at i:8655537 original size:20 final size:19
Alignment explanation
Indices: 8655509--8655546 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
8655499 TGTATAAATC
8655509 ATTTTGAAATTGAATAATG
1 ATTTTGAAATTGAATAATG
*
8655528 ATTTTAGAAATTGAGTAAT
1 ATTTT-GAAATTGAATAAT
8655547 TGGAGACTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.42, C:0.00, G:0.16, T:0.42
Consensus pattern (19 bp):
ATTTTGAAATTGAATAATG
Found at i:8661333 original size:2 final size:2
Alignment explanation
Indices: 8661326--8661387 Score: 124
Period size: 2 Copynumber: 31.0 Consensus size: 2
8661316 TAGGATGCTG
8661326 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8661368 AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT
8661388 NNNNNNNNNN
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 60 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8661478 original size:2 final size:2
Alignment explanation
Indices: 8661471--8661523 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
8661461 NNNNNNNNNN
8661471 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8661513 TA TA TA TA TA T
1 TA TA TA TA TA T
8661524 GTTGTGTATC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8668743 original size:34 final size:35
Alignment explanation
Indices: 8668697--8668776 Score: 117
Period size: 35 Copynumber: 2.3 Consensus size: 35
8668687 ACAGACAAAG
8668697 CTTCAAAGATCAGCAACCAAAATTGCACC-TTCAGC
1 CTTCAAA-ATCAGCAACCAAAATTGCACCTTTCAGC
* * *
8668732 CTTTAAAATCAGTAGCCAAAATTGCACCTTTCAGC
1 CTTCAAAATCAGCAACCAAAATTGCACCTTTCAGC
8668767 CTTCAAAATC
1 CTTCAAAATC
8668777 GGCAGCTAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
34 19 0.47
35 21 0.52
ACGTcount: A:0.36, C:0.29, G:0.10, T:0.25
Consensus pattern (35 bp):
CTTCAAAATCAGCAACCAAAATTGCACCTTTCAGC
Found at i:8676557 original size:21 final size:21
Alignment explanation
Indices: 8676531--8676572 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
8676521 AAACAATGAT
*
8676531 GCCATCATTCAAGGTCAAGTA
1 GCCATCATTCAAAGTCAAGTA
*
8676552 GCCATCATTCAAAGTCTAGTA
1 GCCATCATTCAAAGTCAAGTA
8676573 TAATCAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (21 bp):
GCCATCATTCAAAGTCAAGTA
Found at i:8692612 original size:42 final size:42
Alignment explanation
Indices: 8692514--8692602 Score: 133
Period size: 42 Copynumber: 2.1 Consensus size: 42
8692504 TGTTGATGTG
* * *
8692514 GACCCGGCTATGTGCAAGTAGGTGTGCGCATACGCCGATGAT
1 GACCCGGCTATGTGCAAGTAGGAGTGCCCATAAGCCGATGAT
* *
8692556 GACCCGGCTATGTGCGAGTAGGAGTGCCCATAAGCCGATGCT
1 GACCCGGCTATGTGCAAGTAGGAGTGCCCATAAGCCGATGAT
8692598 GACCC
1 GACCC
8692603 AGTCATGTGC
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.21, C:0.27, G:0.33, T:0.19
Consensus pattern (42 bp):
GACCCGGCTATGTGCAAGTAGGAGTGCCCATAAGCCGATGAT
Found at i:8697209 original size:34 final size:35
Alignment explanation
Indices: 8697161--8697228 Score: 95
Period size: 34 Copynumber: 2.0 Consensus size: 35
8697151 AAAACATTAA
*
8697161 GGATGATGATATGCCCTCACA-TTGGAGAT-TTTGG
1 GGATAATGATATGCCCT-ACATTTGGAGATGTTTGG
*
8697195 GGATAATGATATGCCCTATATTTGGAGATGTTTG
1 GGATAATGATATGCCCTACATTTGGAGATGTTTG
8697229 CTAGGACATC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
33 2 0.07
34 24 0.80
35 4 0.13
ACGTcount: A:0.25, C:0.12, G:0.28, T:0.35
Consensus pattern (35 bp):
GGATAATGATATGCCCTACATTTGGAGATGTTTGG
Found at i:8697967 original size:15 final size:15
Alignment explanation
Indices: 8697947--8697976 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8697937 CTCCTTCAAG
*
8697947 TGACAATGAGGAAGA
1 TGACAATAAGGAAGA
8697962 TGACAATAAGGAAGA
1 TGACAATAAGGAAGA
8697977 GGAGAAGGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.30, T:0.13
Consensus pattern (15 bp):
TGACAATAAGGAAGA
Found at i:8701821 original size:24 final size:24
Alignment explanation
Indices: 8701793--8701847 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
8701783 AAAACAATTA
*
8701793 AAATAAAGATA-AGCAAATAAAAAT
1 AAATAAAGACACA-CAAATAAAAAT
* *
8701817 AAATAAAGACACATAAATAAAAGT
1 AAATAAAGACACACAAATAAAAAT
8701841 AAATAAA
1 AAATAAA
8701848 AGCACCCATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 26 0.96
25 1 0.04
ACGTcount: A:0.71, C:0.05, G:0.07, T:0.16
Consensus pattern (24 bp):
AAATAAAGACACACAAATAAAAAT
Found at i:8707242 original size:32 final size:32
Alignment explanation
Indices: 8707201--8707265 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
8707191 CTATGAAGTT
*
8707201 TAGCCATCAAGAGTATCAAGAATAATAAAAGC
1 TAGCCATCAAAAGTATCAAGAATAATAAAAGC
8707233 TAGCCATCAAAAGTATCAAGAATAATAAAAGC
1 TAGCCATCAAAAGTATCAAGAATAATAAAAGC
8707265 T
1 T
8707266 CAGGAAGAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.51, C:0.15, G:0.14, T:0.20
Consensus pattern (32 bp):
TAGCCATCAAAAGTATCAAGAATAATAAAAGC
Found at i:8716560 original size:33 final size:33
Alignment explanation
Indices: 8716477--8716560 Score: 132
Period size: 33 Copynumber: 2.5 Consensus size: 33
8716467 GTCATATTAT
*
8716477 CATATCACATCATCATCAATTATGATATGTCAG
1 CATATCACATCATCATTAATTATGATATGTCAG
* *
8716510 CATGTCACATCATCATTAATTATGATATGTTAG
1 CATATCACATCATCATTAATTATGATATGTCAG
*
8716543 CATATCACATCAGCATTA
1 CATATCACATCATCATTA
8716561 TACAACATAA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.36, C:0.20, G:0.10, T:0.35
Consensus pattern (33 bp):
CATATCACATCATCATTAATTATGATATGTCAG
Found at i:8717087 original size:13 final size:13
Alignment explanation
Indices: 8717069--8717096 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
8717059 GAAAAGCTTA
8717069 TTTCTTTATTTAT
1 TTTCTTTATTTAT
8717082 TTTCTTTATTTAT
1 TTTCTTTATTTAT
8717095 TT
1 TT
8717097 GTTGGGAGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.07, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTCTTTATTTAT
Found at i:8720736 original size:2 final size:2
Alignment explanation
Indices: 8720729--8720759 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
8720719 TTATCCTTTA
*
8720729 AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8720760 CATCTGATCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8721825 original size:2 final size:2
Alignment explanation
Indices: 8721813--8721842 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
8721803 CACTGGCAGA
8721813 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8721843 GGAAACAATG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:8722363 original size:13 final size:13
Alignment explanation
Indices: 8722342--8722377 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
8722332 TTGTAATTAA
*
8722342 AAATTAAAATCAT
1 AAATAAAAATCAT
8722355 AAATAAAAATCAT
1 AAATAAAAATCAT
8722368 AAATAAAAAT
1 AAATAAAAAT
8722378 TGTAAGATGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.25
Consensus pattern (13 bp):
AAATAAAAATCAT
Found at i:8726103 original size:17 final size:17
Alignment explanation
Indices: 8726081--8726113 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
8726071 ATTAAATATG
8726081 CAAAAGTTCTAAGTGGA
1 CAAAAGTTCTAAGTGGA
8726098 CAAAAGTTCTAAGTGG
1 CAAAAGTTCTAAGTGG
8726114 GAGATTGTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.39, C:0.12, G:0.24, T:0.24
Consensus pattern (17 bp):
CAAAAGTTCTAAGTGGA
Found at i:8732725 original size:43 final size:43
Alignment explanation
Indices: 8732677--8732810 Score: 205
Period size: 43 Copynumber: 3.1 Consensus size: 43
8732667 GTATGATAAC
*
8732677 GATGACCCGACTATGTGCGAGTAGGAAGTGCGCATAAGCCGAT
1 GATGACCCGACTATGTGCGAGTAGGGAGTGCGCATAAGCCGAT
* *
8732720 GATGACCCGACTATGTGTGAGTAGGGAGTGCGCATAAACCGAT
1 GATGACCCGACTATGTGCGAGTAGGGAGTGCGCATAAGCCGAT
* * * *
8732763 GATGGCTCGGCTATGTGCGAGTAGGGAGTGCGCATAAGCTGAT
1 GATGACCCGACTATGTGCGAGTAGGGAGTGCGCATAAGCCGAT
8732806 GATGA
1 GATGA
8732811 TGACCCAGCT
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 81 1.00
ACGTcount: A:0.26, C:0.18, G:0.35, T:0.21
Consensus pattern (43 bp):
GATGACCCGACTATGTGCGAGTAGGGAGTGCGCATAAGCCGAT
Found at i:8737179 original size:21 final size:21
Alignment explanation
Indices: 8737153--8737195 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
8737143 ATGATTTATC
8737153 GGTGATTTTGGCAGTGAACAA
1 GGTGATTTTGGCAGTGAACAA
8737174 GGTGATTTTGGCAGTGAACAA
1 GGTGATTTTGGCAGTGAACAA
8737195 G
1 G
8737196 TTTATTATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.09, G:0.35, T:0.28
Consensus pattern (21 bp):
GGTGATTTTGGCAGTGAACAA
Found at i:8742065 original size:3 final size:3
Alignment explanation
Indices: 8742059--8742089 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
8742049 CCAGCAGCTT
8742059 TTC TTC TTC TTC TTC TTC TTC TTC TT- TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
8742090 TCACATTGCT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (3 bp):
TTC
Found at i:8742977 original size:42 final size:42
Alignment explanation
Indices: 8742854--8742978 Score: 142
Period size: 42 Copynumber: 3.0 Consensus size: 42
8742844 TGTTGATGTG
* * * *
8742854 GACCCGGCTATGTGCGAGTAGGAGTGTACATAAGCCGATGAT
1 GACCCGGCTATGTGCAAGTGGGAGTGCACATAAGCTGATGAT
* * *
8742896 GACCCGGCTATTTGCAAGAGGGAGTGCACATAAACTGATGAT
1 GACCCGGCTATGTGCAAGTGGGAGTGCACATAAGCTGATGAT
* * * * *
8742938 GACCCAGCCATGTGCTAGTGGGAGTGCACATGAGTTGATGA
1 GACCCGGCTATGTGCAAGTGGGAGTGCACATAAGCTGATGA
8742979 CGATGGGAGA
Statistics
Matches: 68, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.27, C:0.19, G:0.32, T:0.22
Consensus pattern (42 bp):
GACCCGGCTATGTGCAAGTGGGAGTGCACATAAGCTGATGAT
Found at i:8744005 original size:2 final size:2
Alignment explanation
Indices: 8743998--8744031 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
8743988 ATAGACAATG
8743998 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8744032 NNNNNNNNNN
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8755743 original size:14 final size:14
Alignment explanation
Indices: 8755708--8755746 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
8755698 TTATACAAAC
*
8755708 AATTAAAA-TAAAA
1 AATTAAAACTAAGA
8755721 AATTAAAACTAAGA
1 AATTAAAACTAAGA
*
8755735 AATTGAAACTAA
1 AATTAAAACTAA
8755747 AATTAAATAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 8 0.35
14 15 0.65
ACGTcount: A:0.67, C:0.05, G:0.05, T:0.23
Consensus pattern (14 bp):
AATTAAAACTAAGA
Found at i:8760012 original size:21 final size:22
Alignment explanation
Indices: 8759976--8760056 Score: 64
Period size: 21 Copynumber: 3.9 Consensus size: 22
8759966 AATGCATGGG
*
8759976 AAGTTT-AAAACTTATTTAAAC
1 AAGTTTAAAAACTTATTCAAAC
*
8759997 AAGTTTAAAAAC-TATTCAGAC
1 AAGTTTAAAAACTTATTCAAAC
* * *
8760018 AAG-TTCAAAA-TCATTCAAGC
1 AAGTTTAAAAACTTATTCAAAC
* *
8760038 AA-TTTCAAAACTCATTCAA
1 AAGTTTAAAAACTTATTCAA
8760057 GTAATTTTGA
Statistics
Matches: 50, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
20 21 0.42
21 24 0.48
22 5 0.10
ACGTcount: A:0.47, C:0.16, G:0.06, T:0.31
Consensus pattern (22 bp):
AAGTTTAAAAACTTATTCAAAC
Found at i:8760070 original size:21 final size:21
Alignment explanation
Indices: 8760004--8760063 Score: 72
Period size: 20 Copynumber: 3.0 Consensus size: 21
8759994 AACAAGTTTA
*
8760004 AAAACT-ATTC-AGACAAGTTC
1 AAAACTCATTCAAG-CAATTTC
8760024 AAAA-TCATTCAAGCAATTTC
1 AAAACTCATTCAAGCAATTTC
*
8760044 AAAACTCATTCAAGTAATTT
1 AAAACTCATTCAAGCAATTT
8760064 TGAAACTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
19 1 0.03
20 18 0.51
21 16 0.46
ACGTcount: A:0.45, C:0.18, G:0.07, T:0.30
Consensus pattern (21 bp):
AAAACTCATTCAAGCAATTTC
Found at i:8760192 original size:21 final size:21
Alignment explanation
Indices: 8760168--8760215 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
8760158 AATTCCCAAA
*
8760168 ATCATTCAAACAAG-CTAAAGG
1 ATCATTCAAAAAAGTCTAAA-G
* *
8760189 ATCACTCAAAAAAGTTTAAAG
1 ATCATTCAAAAAAGTCTAAAG
8760210 ATCATT
1 ATCATT
8760216 GAAGTAATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.48, C:0.17, G:0.10, T:0.25
Consensus pattern (21 bp):
ATCATTCAAAAAAGTCTAAAG
Found at i:8760934 original size:19 final size:19
Alignment explanation
Indices: 8760910--8760948 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
8760900 GTATAAAATA
8760910 TCTTGAATTTCCAGTAGCT
1 TCTTGAATTTCCAGTAGCT
*
8760929 TCTTGAATTTCTAGTAGCT
1 TCTTGAATTTCCAGTAGCT
8760948 T
1 T
8760949 GTCTTCTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.18, G:0.15, T:0.46
Consensus pattern (19 bp):
TCTTGAATTTCCAGTAGCT
Found at i:8763731 original size:21 final size:22
Alignment explanation
Indices: 8763691--8763731 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
8763681 CCATTGGCCC
*
8763691 GTTTTTAAAATTTCATCCATTT
1 GTTTCTAAAATTTCATCCATTT
*
8763713 GTTTCTAAATTTTCA-CCAT
1 GTTTCTAAAATTTCATCCAT
8763732 ACACTTGTCC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.27, C:0.17, G:0.05, T:0.51
Consensus pattern (22 bp):
GTTTCTAAAATTTCATCCATTT
Found at i:8766624 original size:28 final size:30
Alignment explanation
Indices: 8766566--8766625 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 30
8766556 TTTTTGAAAT
*
8766566 TTACACTTTTGCCTCCATAAAAGTCAAAAA
1 TTACACTTTTGCCTCCATAAAACTCAAAAA
* *
8766596 TTACATTTTTGCC-CCA-AAAACTGAAAAA
1 TTACACTTTTGCCTCCATAAAACTCAAAAA
8766624 TT
1 TT
8766626 GCCCATAGAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 12 0.44
29 3 0.11
30 12 0.44
ACGTcount: A:0.40, C:0.22, G:0.07, T:0.32
Consensus pattern (30 bp):
TTACACTTTTGCCTCCATAAAACTCAAAAA
Done.