Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36364294
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2168405 characters in sequence are not A, C, G, or T
File 34 of 91
Found at i:11810193 original size:38 final size:38
Alignment explanation
Indices: 11810136--11810243 Score: 189
Period size: 38 Copynumber: 2.8 Consensus size: 38
11810126 CATAGCTGGC
*
11810136 GCCATCGTGTGCATCCCCCCACATCGTGCACAATCAGT
1 GCCATCGTGTACATCCCCCCACATCGTGCACAATCAGT
* *
11810174 GCCATCGTGTACATACCCCCACATCATGCACAATCAGT
1 GCCATCGTGTACATCCCCCCACATCGTGCACAATCAGT
11810212 GCCATCGTGTACATCCCCCCACATCGTGCACA
1 GCCATCGTGTACATCCCCCCACATCGTGCACA
11810244 CGGGCACTAT
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 65 1.00
ACGTcount: A:0.24, C:0.40, G:0.16, T:0.20
Consensus pattern (38 bp):
GCCATCGTGTACATCCCCCCACATCGTGCACAATCAGT
Found at i:11810236 original size:19 final size:19
Alignment explanation
Indices: 11810138--11810239 Score: 55
Period size: 19 Copynumber: 5.4 Consensus size: 19
11810128 TAGCTGGCGC
*
11810138 CATCGTGTGCATCCCCCCA
1 CATCGTGTACATCCCCCCA
* ****
11810157 CATCGTGCACAATCAGTGC-
1 CATCGTGTAC-ATCCCCCCA
*
11810176 CATCGTGTACATACCCCCA
1 CATCGTGTACATCCCCCCA
* * ****
11810195 CATCATGCACAATCAGTGC-
1 CATCGTGTAC-ATCCCCCCA
11810214 CATCGTGTACATCCCCCCA
1 CATCGTGTACATCCCCCCA
11810233 CATCGTG
1 CATCGTG
11810240 CACACGGGCA
Statistics
Matches: 54, Mismatches: 25, Indels: 8
0.62 0.29 0.09
Matches are distributed among these distances:
18 7 0.13
19 40 0.74
20 7 0.13
ACGTcount: A:0.24, C:0.39, G:0.16, T:0.22
Consensus pattern (19 bp):
CATCGTGTACATCCCCCCA
Found at i:11810372 original size:2 final size:2
Alignment explanation
Indices: 11810365--11810390 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
11810355 CACAACATAG
11810365 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
11810391 GTCATCATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:11812573 original size:22 final size:22
Alignment explanation
Indices: 11812545--11812587 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
11812535 CAAATACGAC
11812545 AATGAATCTTCACTGCAGCGAG
1 AATGAATCTTCACTGCAGCGAG
* **
11812567 AATGAATTTTCGTTGCAGCGA
1 AATGAATCTTCACTGCAGCGA
11812588 TGTTGGGATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (22 bp):
AATGAATCTTCACTGCAGCGAG
Found at i:11812854 original size:60 final size:59
Alignment explanation
Indices: 11812761--11812925 Score: 199
Period size: 60 Copynumber: 2.7 Consensus size: 59
11812751 TAGGAGACCA
* * * *
11812761 AAACAGAAAGTTTTTCGCTGCGGCGAGATTCAATCTCGTTGCAGCAAAATTG-TAACCCAG
1 AAACA-AAAGTTTCTCGCTGCAGCGAAATTCAATCTCGCTGCAGCAAAATTGCT-ACCCAG
* *
11812821 AAACAAAATGTTTCTCGCTGCAACGAAATTCAATCTCGCTGCAGCGAAATTGCTACCCAG
1 AAACAAAA-GTTTCTCGCTGCAGCGAAATTCAATCTCGCTGCAGCAAAATTGCTACCCAG
*
11812881 AAACGAAAAGTTTCTCGCTGCAGCGAAAATGC-ATCCTCGCTGCAG
1 AAAC-AAAAGTTTCTCGCTGCAGCG-AAATTCAAT-CTCGCTGCAG
11812926 TGAGTTTTCG
Statistics
Matches: 92, Mismatches: 8, Indels: 9
0.84 0.07 0.08
Matches are distributed among these distances:
59 3 0.03
60 69 0.75
61 20 0.22
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.23
Consensus pattern (59 bp):
AAACAAAAGTTTCTCGCTGCAGCGAAATTCAATCTCGCTGCAGCAAAATTGCTACCCAG
Found at i:11815865 original size:16 final size:17
Alignment explanation
Indices: 11815837--11815870 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
11815827 TTATGCCAAT
11815837 ATACAACATATATATTC
1 ATACAACATATATATTC
*
11815854 ATACAA-ATATATTTTC
1 ATACAACATATATATTC
11815870 A
1 A
11815871 AAAATTTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.47, C:0.15, G:0.00, T:0.38
Consensus pattern (17 bp):
ATACAACATATATATTC
Found at i:11819770 original size:40 final size:38
Alignment explanation
Indices: 11819719--11819822 Score: 127
Period size: 38 Copynumber: 2.7 Consensus size: 38
11819709 CACCCGACTT
* *
11819719 ATGTGCATCCCCCCACATCATGCACATAGCCGACGCCATC
1 ATGTGCATCCCCCCACATCGTGCACA-AGCAG-CGCCATC
* * * *
11819759 GTGTGCATCCCCCCACATCGTACACAATCAGTGCCATC
1 ATGTGCATCCCCCCACATCGTGCACAAGCAGCGCCATC
*
11819797 ATGTACATCCCCCCACATCGTGCACA
1 ATGTGCATCCCCCCACATCGTGCACA
11819823 CGGGCACTAT
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
38 29 0.53
39 3 0.05
40 23 0.42
ACGTcount: A:0.25, C:0.41, G:0.14, T:0.19
Consensus pattern (38 bp):
ATGTGCATCCCCCCACATCGTGCACAAGCAGCGCCATC
Found at i:11822096 original size:37 final size:39
Alignment explanation
Indices: 11822000--11822098 Score: 114
Period size: 37 Copynumber: 2.6 Consensus size: 39
11821990 AACTCATGTG
* *
11822000 CATCCCCCCACATCGTGCACATAGCTGAAGTCATCGTCTG
1 CATCCCCCCACATCGTGCACATA-CTGAAGCCATCGTCTA
* *
11822040 CATCCCCCCACATTGTGCACAT-CT-AATGCCAT-GTGTA
1 CATCCCCCCACATCGTGCACATACTGAA-GCCATCGTCTA
*
11822077 CATCCCCCCACATCATGCACAT
1 CATCCCCCCACATCGTGCACAT
11822099 GGGCAATATC
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
37 25 0.48
38 6 0.12
40 21 0.40
ACGTcount: A:0.24, C:0.39, G:0.13, T:0.23
Consensus pattern (39 bp):
CATCCCCCCACATCGTGCACATACTGAAGCCATCGTCTA
Found at i:11825778 original size:21 final size:21
Alignment explanation
Indices: 11825735--11825778 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
11825725 AGTGACTATC
** *
11825735 TCGCTGCAGCGAGATTCATTT
1 TCGCTGCAGCGAGAACCAGTT
11825756 TCGCTGCAGCGAGAACCAGTT
1 TCGCTGCAGCGAGAACCAGTT
11825777 TC
1 TC
11825779 AGTGAAAGGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.20, C:0.27, G:0.25, T:0.27
Consensus pattern (21 bp):
TCGCTGCAGCGAGAACCAGTT
Found at i:11839221 original size:2 final size:2
Alignment explanation
Indices: 11839214--11839241 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
11839204 NNTATAGTTG
11839214 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
11839242 CTATGTCATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:11839394 original size:54 final size:54
Alignment explanation
Indices: 11839336--11839447 Score: 197
Period size: 54 Copynumber: 2.1 Consensus size: 54
11839326 GAGGGAGATC
11839336 GATGGGATGTCCGACTATGTGCACGATGTGGTAGGATGCACATGAGATGGGTGA
1 GATGGGATGTCCGACTATGTGCACGATGTGGTAGGATGCACATGAGATGGGTGA
* * *
11839390 GATGGGATGTCCGGCTATGTGCACGATGTGGTGGGATGCACATGAGCTGGGTGA
1 GATGGGATGTCCGACTATGTGCACGATGTGGTAGGATGCACATGAGATGGGTGA
11839444 GATG
1 GATG
11839448 CACATAATGA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.21, C:0.13, G:0.41, T:0.24
Consensus pattern (54 bp):
GATGGGATGTCCGACTATGTGCACGATGTGGTAGGATGCACATGAGATGGGTGA
Found at i:11840311 original size:72 final size:72
Alignment explanation
Indices: 11840231--11840394 Score: 274
Period size: 72 Copynumber: 2.3 Consensus size: 72
11840221 ATTAAATGCA
* *
11840231 ATTGTGGAAACCATGAGCTGTTAGCCCCGATAAGCGATTTCTAAATGGATTTATAATGATTTATA
1 ATTGTGGAAAGCATGAGCTGTTAGCCCCGATAAGCGATTTCTAAATGGATTTATAATAATTTATA
11840296 CACTGTT
66 CACTGTT
* * *
11840303 ATTGTGGAAAGCATGAGCTGTTAGGCCCGATAGGTGATTTCTAAATGGATTTATAATAATTTATA
1 ATTGTGGAAAGCATGAGCTGTTAGCCCCGATAAGCGATTTCTAAATGGATTTATAATAATTTATA
11840368 CACTGTT
66 CACTGTT
*
11840375 ATTGTGGAAAGCATGGGCTG
1 ATTGTGGAAAGCATGAGCTG
11840395 GTAGAACTCG
Statistics
Matches: 86, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
72 86 1.00
ACGTcount: A:0.30, C:0.13, G:0.23, T:0.34
Consensus pattern (72 bp):
ATTGTGGAAAGCATGAGCTGTTAGCCCCGATAAGCGATTTCTAAATGGATTTATAATAATTTATA
CACTGTT
Found at i:11842908 original size:13 final size:13
Alignment explanation
Indices: 11842890--11842914 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11842880 TTTTCAGAAA
11842890 TTTATAAAATCAT
1 TTTATAAAATCAT
11842903 TTTATAAAATCA
1 TTTATAAAATCA
11842915 CAATTTTTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTATAAAATCAT
Found at i:11844094 original size:27 final size:27
Alignment explanation
Indices: 11844043--11844094 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
11844033 ATGTCCTGGT
*
11844043 GGTGGAAAATTACAATTTTGCCCTTGG
1 GGTGGAAAATTACAATTTTGACCTTGG
*
11844070 GGTGGCAAAATTACCATTTT-ACCTT
1 GGTGG-AAAATTACAATTTTGACCTT
11844095 TTTACTCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 9 0.41
28 13 0.59
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (27 bp):
GGTGGAAAATTACAATTTTGACCTTGG
Found at i:11844165 original size:20 final size:20
Alignment explanation
Indices: 11844148--11844185 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
11844138 CTTGAAATCT
*
11844148 TACTTCAATAAGTCAAATTA
1 TACTCCAATAAGTCAAATTA
*
11844168 TACTCCAGTAAGTCAAAT
1 TACTCCAATAAGTCAAAT
11844186 GGGGCTAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.32
Consensus pattern (20 bp):
TACTCCAATAAGTCAAATTA
Found at i:11848367 original size:5 final size:5
Alignment explanation
Indices: 11848359--11848403 Score: 54
Period size: 5 Copynumber: 9.0 Consensus size: 5
11848349 CTATTCAATA
* * * *
11848359 TAACC TAACT TAACT TAACT TCACT TAACT TATCT TCACT TAACT
1 TAACT TAACT TAACT TAACT TAACT TAACT TAACT TAACT TAACT
11848404 GGACATAGGG
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.33, C:0.27, G:0.00, T:0.40
Consensus pattern (5 bp):
TAACT
Found at i:11848384 original size:15 final size:15
Alignment explanation
Indices: 11848366--11848403 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
11848356 ATATAACCTA
11848366 ACTTAACTTAACTTC
1 ACTTAACTTAACTTC
*
11848381 ACTTAACTTATCTTC
1 ACTTAACTTAACTTC
11848396 ACTTAACT
1 ACTTAACT
11848404 GGACATAGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.32, C:0.26, G:0.00, T:0.42
Consensus pattern (15 bp):
ACTTAACTTAACTTC
Found at i:11848482 original size:16 final size:15
Alignment explanation
Indices: 11848449--11848495 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
11848439 TAAAACAACC
11848449 TTAAAATCAAAAACT
1 TTAAAATCAAAAACT
* *
11848464 TTAAAATCCAAAGCT
1 TTAAAATCAAAAACT
*
11848479 TTTAAA-CAAAAATCT
1 TTAAAATCAAAAA-CT
11848494 TT
1 TT
11848496 GATCTTCAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
14 4 0.15
15 22 0.85
ACGTcount: A:0.51, C:0.15, G:0.02, T:0.32
Consensus pattern (15 bp):
TTAAAATCAAAAACT
Found at i:11850761 original size:20 final size:20
Alignment explanation
Indices: 11850716--11850753 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
11850706 TTTTGGCCCC
11850716 ATTTGACTTATTGGAGTATA
1 ATTTGACTTATTGGAGTATA
11850736 ATTTGACTTATTGGAGTA
1 ATTTGACTTATTGGAGTA
11850754 AGATTTGAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.29, C:0.05, G:0.21, T:0.45
Consensus pattern (20 bp):
ATTTGACTTATTGGAGTATA
Found at i:11850837 original size:27 final size:27
Alignment explanation
Indices: 11850807--11850864 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 27
11850797 TTGGAGTAAA
*
11850807 AGGGTAAAATGGTAATTTTGCCACC-CC
1 AGGGCAAAATGGTAATTTT-CCACCACC
*
11850834 AGGGGCAAAATTGTAATTTTCCACCACC
1 A-GGGCAAAATGGTAATTTTCCACCACC
11850862 AGG
1 AGG
11850865 ACAGTTTTCC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 8 0.30
28 19 0.70
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.24
Consensus pattern (27 bp):
AGGGCAAAATGGTAATTTTCCACCACC
Found at i:11852001 original size:13 final size:13
Alignment explanation
Indices: 11851983--11852007 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11851973 GGAAAAATTG
11851983 TGATTTTATAAAA
1 TGATTTTATAAAA
11851996 TGATTTTATAAA
1 TGATTTTATAAA
11852008 TTTTCTGGGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:11853004 original size:18 final size:17
Alignment explanation
Indices: 11852977--11853010 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
11852967 TTTACAAGAA
*
11852977 AATAGTTTATTTTATTG
1 AATAGTTTATTATATTG
11852994 AATATGTTTATTATATT
1 AATA-GTTTATTATATT
11853011 CAAATAGTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.32, C:0.00, G:0.09, T:0.59
Consensus pattern (17 bp):
AATAGTTTATTATATTG
Found at i:11853428 original size:15 final size:15
Alignment explanation
Indices: 11853408--11853445 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
11853398 CAGATATTTT
11853408 GATTTTAAAGCTTTG
1 GATTTTAAAGCTTTG
* *
11853423 GATTTTAAAGTTTTT
1 GATTTTAAAGCTTTG
11853438 GATTTTAA
1 GATTTTAA
11853446 GGTTGTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.29, C:0.03, G:0.16, T:0.53
Consensus pattern (15 bp):
GATTTTAAAGCTTTG
Found at i:11859613 original size:15 final size:15
Alignment explanation
Indices: 11859567--11859615 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
11859557 CTTAAAACAA
* *
11859567 CTTTAAAACCAAAAA
1 CTTTAAAATCAAAAT
* *
11859582 CTTTAAAATCCATAT
1 CTTTAAAATCAAAAT
11859597 CTTTAAAATCAAAAT
1 CTTTAAAATCAAAAT
11859612 CTTT
1 CTTT
11859616 GATCTTTAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.47, C:0.18, G:0.00, T:0.35
Consensus pattern (15 bp):
CTTTAAAATCAAAAT
Found at i:11964175 original size:2 final size:2
Alignment explanation
Indices: 11964168--11964192 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
11964158 GCATAAAATA
11964168 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
11964193 CCATTGAGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:11964443 original size:34 final size:34
Alignment explanation
Indices: 11964405--11964496 Score: 150
Period size: 34 Copynumber: 2.7 Consensus size: 34
11964395 CCATTTAAGG
11964405 GCTGGTTTTGGAGGCTGAAAA-TAGCCATTTTTCT
1 GCTGGTTTTGGAGGCTGAAAAGT-GCCATTTTTCT
11964439 GCTGGTTTTGGAGGCTGAAAAGTGCCATTTTTCT
1 GCTGGTTTTGGAGGCTGAAAAGTGCCATTTTTCT
**
11964473 GCTGGTTTTGGAGGCCAAAAAGTG
1 GCTGGTTTTGGAGGCTGAAAAGTG
11964497 TAAAATTTTG
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
34 54 0.98
35 1 0.02
ACGTcount: A:0.21, C:0.14, G:0.30, T:0.35
Consensus pattern (34 bp):
GCTGGTTTTGGAGGCTGAAAAGTGCCATTTTTCT
Found at i:11964821 original size:5 final size:5
Alignment explanation
Indices: 11964811--11964853 Score: 77
Period size: 5 Copynumber: 8.6 Consensus size: 5
11964801 AGAAAGAAAC
*
11964811 AAAGA AAAGA AAAGA AAAGA AAAGA AAAGA AAGGA AAAGA AAA
1 AAAGA AAAGA AAAGA AAAGA AAAGA AAAGA AAAGA AAAGA AAA
11964854 TAACAAGGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
5 36 1.00
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (5 bp):
AAAGA
Found at i:11964943 original size:25 final size:24
Alignment explanation
Indices: 11964885--11964945 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 24
11964875 CCCAACAAGC
11964885 AAGAAAAATGGACATGGTCCAATA
1 AAGAAAAATGGACATGGTCCAATA
11964909 AAGGAAAAATGGACATGGTCCAATTA
1 AA-GAAAAATGGACATGGTCCAA-TA
11964935 AA-AAGAAATGG
1 AAGAA-AAATGG
11964946 GAGAAGTCCA
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
24 4 0.12
25 26 0.76
26 4 0.12
ACGTcount: A:0.51, C:0.10, G:0.23, T:0.16
Consensus pattern (24 bp):
AAGAAAAATGGACATGGTCCAATA
Found at i:11968126 original size:171 final size:168
Alignment explanation
Indices: 11967839--11969494 Score: 1341
Period size: 171 Copynumber: 9.7 Consensus size: 168
11967829 GACATAAAAA
* * * * *
11967839 ATTATAAAACCATTTAAAGCAAGCAATTATGCTTTCGAAGGTAT-AGGTGACTATAAATGGACTT
1 ATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGA-GTGACTATAAATGGACTT
* * * * * *
11967903 CTCTTGTCAATCGATGGCTTTCTCTTCGCGTTT-TCATATGCAAACATCAAATTATGATCTTCTT
64 TTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-GATGCAAACATCAAATTATGAT-TTGTT
* *
11967967 TTTACCAAGAATGAAACAAATTCAATTTAAAA-CTATTTATAA-
127 TTAACCAAAAATGAAA-AAATTCAATTTAAAATC-ATTTATAAG
* * * * *
11968009 AGTTATAAAATCACTTAAAGTGAGTAACAAGGCTTTCAAGTGCATGAGTGACTATAAATGAACTT
1 A-TTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCAAG-GCATGAGTGACTATAAATGGACTT
* *** **
11968074 TTCTTGTCAATGGATGACTTTCGCTTTGTGTTTCTCGATGCAAATGTCAAATTATGATTTGTTTT
64 TTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACATCAAATTATGATTTGTTTT
* *
11968139 AACCAGAAATGAAAAATATTCAATCTAAAATCATTTATAAG
129 AACCAAAAATGAAAAA-ATTCAATTTAAAATCATTTATAAG
* * * * * * *
11968180 CTTACAAAACCATTTAGAGGGAGTAATTAGGCTTTTGAAGGCATGAGTGGCTATAAATGGACTTT
1 ATTATAAAACCATTTAAAGCGAGTAACTAGGC-TTTCAAGGCATGAGTGACTATAAATGGACTTT
* * * * * * * * *
11968245 TCTTGTCGATGGATAGCTTTCACTTCATGTTTCTAGATACAAGCATTAAATTATGATATGTTTTA
65 TCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACATCAAATTATGATTTGTTTTA
* * ** *
11968310 ACTAGAAATGAATAAAATTTCGGTTTAAAATCATTTACAAG
130 ACCAAAAATGAA-AAAA-TTCAATTTAAAATCATTTATAAG
* * * * * *** * * *
11968351 GTTATAAAATCATTTCAAGCAAGTAACTAGGCTTTCAAAAGCATGAACAACCACAAATGGACATT
1 ATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTT
* * * * * * *
11968416 TCTTGTCAATAGAGGGTTTTCGCTTCACGTTTTTCAATGTAAA-AGTCAATTTA-GAATTTGTTT
65 TCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACA-TCAAATTATG-ATTTGTTT
*
11968479 TAACCAAAAATAAAAAAATTCAATTTTAAAATCATTTACT-AG
128 TAACCAAAAATGAAAAAATTCAA-TTTAAAATCATTTA-TAAG
* * * ** * *
11968521 ATTATAAAACTATTGAAAGCGAGTAACTGGGCTTTTGGAGGTATGAGTGACTA-AAAGTGTACTT
1 ATTATAAAACCATTTAAAGCGAGTAACTAGGC-TTTCAAGGCATGAGTGACTATAAA-TGGACTT
** * * * * * *
11968585 CCCATGTTAATGGATGGCTTTCGCTTCACATTTC-CAGATGCAAACATCCAATTATGATCTATTT
64 TTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-GATGCAAACATCAAATTATGATTTGTTT
* * *
11968649 TAACCAAACATGAATAAAATTTCAATCTAAAATGATTTATAAG
128 TAACCAAAAATGAA-AAAA-TTCAATTTAAAATCATTTATAAG
* * *
11968692 ATTGTAAAACCATTTAAAGCGAGTAA-TGAGGCTTTCACAAGCGTGAGTGACTATAAATGGAAAC
1 ATTATAAAACCATTTAAAGCGAGTAACT-AGGCTTTCA-AGGCATGAGTGACTATAAATGG--AC
*** * * * *
11968756 ATTAAATTATAAATGGATGGCTTTCGCTTCATGTTTC-CAGATGCAAACATCAAATTATGATATG
62 -TTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-GATGCAAACATCAAATTATGATTTG
* *
11968820 TTTTAACCAAAAATGTAAAATATTTCAATTCAAAATCATTTATAAG
125 TTTTAACCAAAAATG-AAAA-AATTCAATTTAAAATCATTTATAAG
* * * * * * * * *
11968866 ATTTTAAAGCCATTTAAAGCAAGTAACAACGATTTCGAAGGTATTG-GTGACCATAAATGGATTT
1 ATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCA-TGAGTGACTATAAATGGACTT
** * * **
11968930 TTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATATAAACATCCAATTATGATGTACTTT
64 TTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACATCAAATTATGATTTGTTTT
* * * * * * *
11968995 AACTAAAAGTAAAAAAACT-GATTTAATATCATTTATATG
129 AACCAAAAATGAAAAAATTCAATTTAAAATCATTTATAAG
* * ** * * *
11969034 ATTATAAAACCACTTATAGTAATTACCAAGGCTTTCGAAGGCACT-AGTGA-TAATAAATGGACT
1 ATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCA-TGAGTGACT-ATAAATGGACT
* * * * * * * **
11969097 TTTCTTGTCAA-GGTATGGCTTTTGCTTGACATTTCCCAATGCACATATCCCATTATGATTTGTT
63 TTTCTTGTCAATGG-ATGGCTTTCGCTTCACGTTTCTCGATGCAAACATCAAATTATGATTTGTT
11969161 TTAACCAAAAATGAAAATAATTCAATTTAAAATCATTTATAAG
127 TTAACCAAAAATGAAAA-AATTCAATTTAAAATCATTTATAAG
* * * *
11969204 ATTATAAATCAATTTCAAGCGAGTAACTAGGCTTTTAAAGGCATGAGTGACTATAAATGGACTTT
1 ATTATAAAACCATTTAAAGCGAGTAACTAGGC-TTTCAAGGCATGAGTGACTATAAATGGACTTT
* * * * * * * * *
11969269 TCTTATGAATGGATGG-TTTTGCTTCACATTTCCCAATGTAAACAACAAATTATGATGTGTTTTA
65 TCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACATCAAATTATGATTTGTTTTA
* * * *
11969333 ACTAAAAATGAAAAAAACAGTTCAATTTAAGATGATTTATAAA
130 ACCAAAAATG--AAAAA-A-TTCAATTTAAAATCATTTATAAG
* * * ** * *
11969376 ATTATAAATCCACTTAAAGTGAGTAA-TGAGATTTTCAAAGGTATGAGTGACTATAAATAGACTT
1 ATTATAAAACCATTTAAAGCGAGTAACT-AGGCTTTC-AAGGCATGAGTGACTATAAATGGACTT
* * *
11969440 TTCTTGTCAATGGATGACTTTTGCTTCATGTTTCTCGATGCAAACATCAAATTAT
64 TTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACATCAAATTAT
11969495 TATCGATAAT
Statistics
Matches: 1173, Mismatches: 262, Indels: 99
0.76 0.17 0.06
Matches are distributed among these distances:
167 2 0.00
168 126 0.11
169 64 0.05
170 355 0.30
171 359 0.31
172 96 0.08
173 33 0.03
174 132 0.11
175 6 0.01
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.35
Consensus pattern (168 bp):
ATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCAAGGCATGAGTGACTATAAATGGACTTTT
CTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACATCAAATTATGATTTGTTTTAA
CCAAAAATGAAAAAATTCAATTTAAAATCATTTATAAG
Found at i:11968236 original size:170 final size:169
Alignment explanation
Indices: 11967839--11969494 Score: 1338
Period size: 170 Copynumber: 9.7 Consensus size: 169
11967829 GACATAAAAA
* * * * * *
11967839 ATTATAAAACCATTTAAAGCAAGCAATTATGCTTTCGAAGGTAT-AGGTGACTATAAATGGACTT
1 ATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGA-GTGACTATAAATGGACTT
* * * * * *
11967903 CTCTTGTCAATCGATGGCTTTCTCTTCGCGTTT-TCATATGCAAACATCAAATTATGATCTTCTT
65 TTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-GATGCAAACATCAAATTATGAT-TTGTT
* *
11967967 TTTACCAAGAATGAAACAAATTCAATTTAAAA-CTATTTATAA-
128 TTAACCAAAAATGAAA-AAATTCAATTTAAAATC-ATTTATAAG
* * * * * *
11968009 AGTTATAAAATCACTTAAAGTGAGTAACAAGGC-TTTCAAGTGCATGAGTGACTATAAATGAACT
1 A-TTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAG-GCATGAGTGACTATAAATGGACT
* *** **
11968073 TTTCTTGTCAATGGATGACTTTCGCTTTGTGTTTCTCGATGCAAATGTCAAATTATGATTTGTTT
64 TTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACATCAAATTATGATTTGTTT
* *
11968138 TAACCAGAAATGAAAAATATTCAATCTAAAATCATTTATAAG
129 TAACCAAAAATGAAAAA-ATTCAATTTAAAATCATTTATAAG
* * * * * *
11968180 CTTACAAAACCATTTAGAGGGAGTAATTAGGCTTTTGAAGGCATGAGTGGCTATAAATGGACTTT
1 ATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTT
* * * * * * * * *
11968245 TCTTGTCGATGGATAGCTTTCACTTCATGTTTCTAGATACAAGCATTAAATTATGATATGTTTTA
66 TCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACATCAAATTATGATTTGTTTTA
* * ** *
11968310 ACTAGAAATGAATAAAATTTCGGTTTAAAATCATTTACAAG
131 ACCAAAAATGAA-AAAA-TTCAATTTAAAATCATTTATAAG
* * * * ** * *** * * *
11968351 GTTATAAAATCATTTCAAGCAAGTAACTAGGCTTTCAAAAGCATGAACAACCACAAATGGACATT
1 ATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTT
* * * * * * *
11968416 TCTTGTCAATAGAGGGTTTTCGCTTCACGTTTTTCAATGTAAA-AGTCAATTTA-GAATTTGTTT
66 TCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACA-TCAAATTATG-ATTTGTTT
*
11968479 TAACCAAAAATAAAAAAATTCAATTTTAAAATCATTTACT-AG
129 TAACCAAAAATGAAAAAATTCAA-TTTAAAATCATTTA-TAAG
* * * * * *
11968521 ATTATAAAACTATTGAAAGCGAGTAACTGGGCTTTTGGAGGTATGAGTGACTA-AAAGTGTACTT
1 ATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGAGTGACTATAAA-TGGACTT
** * * * * * *
11968585 CCCATGTTAATGGATGGCTTTCGCTTCACATTTC-CAGATGCAAACATCCAATTATGATCTATTT
65 TTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-GATGCAAACATCAAATTATGATTTGTTT
* * *
11968649 TAACCAAACATGAATAAAATTTCAATCTAAAATGATTTATAAG
129 TAACCAAAAATGAA-AAAA-TTCAATTTAAAATCATTTATAAG
* * * *
11968692 ATTGTAAAACCATTTAAAGCGAGTAA-TGAGGC-TTTCACAAGCGTGAGTGACTATAAATGGAAA
1 ATTATAAAACCATTTAAAGCGAGTAACT-AGGCTTTTGA-AGGCATGAGTGACTATAAATGG--A
*** * * * *
11968755 CATTAAATTATAAATGGATGGCTTTCGCTTCATGTTTC-CAGATGCAAACATCAAATTATGATAT
62 C-TTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-GATGCAAACATCAAATTATGATTT
* *
11968819 GTTTTAACCAAAAATGTAAAATATTTCAATTCAAAATCATTTATAAG
125 GTTTTAACCAAAAATG-AAAA-AATTCAATTTAAAATCATTTATAAG
* * * * * * * * * *
11968866 ATTTTAAAGCCATTTAAAGCAAGTAACAACGATTTCGAAGGTATTG-GTGACCATAAATGGATTT
1 ATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCA-TGAGTGACTATAAATGGACTT
** * * **
11968930 TTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATATAAACATCCAATTATGATGTACTTT
65 TTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACATCAAATTATGATTTGTTTT
* * * * * * *
11968995 AACTAAAAGTAAAAAAACT-GATTTAATATCATTTATATG
130 AACCAAAAATGAAAAAATTCAATTTAAAATCATTTATAAG
* * ** * * * *
11969034 ATTATAAAACCACTTATAGTAATTACCAAGGCTTTCGAAGGCACT-AGTGA-TAATAAATGGACT
1 ATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCA-TGAGTGACT-ATAAATGGACT
* * * * * * * **
11969097 TTTCTTGTCAA-GGTATGGCTTTTGCTTGACATTTCCCAATGCACATATCCCATTATGATTTGTT
64 TTTCTTGTCAATGG-ATGGCTTTCGCTTCACGTTTCTCGATGCAAACATCAAATTATGATTTGTT
11969161 TTAACCAAAAATGAAAATAATTCAATTTAAAATCATTTATAAG
128 TTAACCAAAAATGAAAA-AATTCAATTTAAAATCATTTATAAG
* * * *
11969204 ATTATAAATCAATTTCAAGCGAGTAACTAGGCTTTTAAAGGCATGAGTGACTATAAATGGACTTT
1 ATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTT
* * * * * * * * *
11969269 TCTTATGAATGGATGG-TTTTGCTTCACATTTCCCAATGTAAACAACAAATTATGATGTGTTTTA
66 TCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACATCAAATTATGATTTGTTTTA
* * * *
11969333 ACTAAAAATGAAAAAAACAGTTCAATTTAAGATGATTTATAAA
131 ACCAAAAATG--AAAAA-A-TTCAATTTAAAATCATTTATAAG
* * * * * * *
11969376 ATTATAAATCCACTTAAAGTGAGTAA-T-GAGATTTTCAAAGGTATGAGTGACTATAAATAGACT
1 ATTATAAAACCATTTAAAGCGAGTAACTAG-GCTTTT-GAAGGCATGAGTGACTATAAATGGACT
* * *
11969439 TTTCTTGTCAATGGATGACTTTTGCTTCATGTTTCTCGATGCAAACATCAAATTAT
64 TTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACATCAAATTAT
11969495 TATCGATAAT
Statistics
Matches: 1171, Mismatches: 267, Indels: 93
0.76 0.17 0.06
Matches are distributed among these distances:
167 2 0.00
168 126 0.11
169 64 0.05
170 361 0.31
171 354 0.30
172 95 0.08
173 33 0.03
174 128 0.11
175 8 0.01
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.35
Consensus pattern (169 bp):
ATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTT
TCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACATCAAATTATGATTTGTTTTA
ACCAAAAATGAAAAAATTCAATTTAAAATCATTTATAAG
Found at i:11968369 original size:19 final size:19
Alignment explanation
Indices: 11968331--11968369 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
11968321 ATAAAATTTC
11968331 GGTTTAAAATCATTTACAA
1 GGTTTAAAATCATTTACAA
11968350 GGTTATAAAATCATTT-CAA
1 GGTT-TAAAATCATTTACAA
11968369 G
1 G
11968370 CAAGTAACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.41, C:0.10, G:0.13, T:0.36
Consensus pattern (19 bp):
GGTTTAAAATCATTTACAA
Found at i:11968752 original size:341 final size:337
Alignment explanation
Indices: 11967839--11972032 Score: 2804
Period size: 341 Copynumber: 12.4 Consensus size: 337
11967829 GACATAAAAA
* * * * * *
11967839 ATTATAAAACCATTTAAAGCAAGCAATTATGCTTTCGAAGGTAT-AGGTGACTATAAATGGACTT
1 ATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGA-GTGACTATAAATGGACTT
* * * * * * *
11967903 CTCTTGTCAATCGATGGCTTTCTCTTCGCGTTTTCATATGCAAACATCAAATTATGATCTTCTTT
65 TTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCAGATGCAAACATCAAATTATGATC-TATTT
* * *
11967968 TTACCAAGAATGAAACAAA-TTCAATTTAAAA-CTATTTATAA-AGTTATAAAATCACTTAAAGT
129 TAACTAA-AATGAAA-AAATTTCAATTTAAAATC-ATTTATAAGA-TTATAAAACCACTTAAAGT
* * * * * *
11968030 GAGTAACAAGGCTTTCAAGTGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGACTTT
190 GAGTAATAAGGCTTTCAA-AGCATGAGTGACTATAAATGGACTTTTCTTGTCAATAGAGGGCTTT
*** * * * * *
11968095 CGCTTTGTGTTTCTCGATGCAAATGTCAAATTATGATTTGTTTTAACCAGAAATGAAAAATATTC
254 CGCTTCACGTTTCCCAATGCAAA-ATCAAATTATGATTTGTTTTAACCAAAAATGAAAAAAATTC
*
11968160 AATCTAAAATCATTTATAAG
318 AATTTAAAATCATTTATAAG
* * * * * *
11968180 CTTACAAAACCATTTAGAGGGAGTAATTAGGCTTTTGAAGGCATGAGTGGCTATAAATGGACTTT
1 ATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTT
* * * * * * * * * *
11968245 TCTTGTCGATGGATAGCTTTCACTTCATGTTTCTAGATACAAGCATTAAATTATGATATGTTTTA
66 TCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCAGATGCAAACATCAAATTATGATCTATTTTA
** * * * * * **
11968310 ACTAGAAATGAATAAAATTTCGGTTTAAAATCATTTACAAGGTTATAAAATCATTTCAAGCAAGT
131 ACTA-AAATGAA-AAAATTTCAATTTAAAATCATTTATAAGATTATAAAACCACTTAAAGTGAGT
*** * * * *
11968375 AACT-AGGCTTTCAAAAGCATGAACAACCACAAATGGACATTTCTTGTCAATAGAGGGTTTTCGC
194 AA-TAAGGCTTTC-AAAGCATGAGTGACTATAAATGGACTTTTCTTGTCAATAGAGGGCTTTCGC
** * *
11968439 TTCACGTTTTTCAATGTAAAAGTCAATTTA-GAATTTGTTTTAACCAAAAAT-AAAAAAATTCAA
257 TTCACGTTTCCCAATGCAAAA-TCAAATTATG-ATTTGTTTTAACCAAAAATGAAAAAAATTCAA
11968502 TTTTAAAATCATTTACT-AG
320 -TTTAAAATCATTTA-TAAG
* * * * * *
11968521 ATTATAAAACTATTGAAAGCGAGTAACTGGGCTTTTGGAGGTATGAGTGACTA-AAAGTGTACTT
1 ATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGAGTGACTATAAA-TGGACTT
** * * * *
11968585 CCCATGTTAATGGATGGCTTTCGCTTCACATTTCCAGATGCAAACATCCAATTATGATCTATTTT
65 TTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCAGATGCAAACATCAAATTATGATCTATTTT
* * * * * *
11968650 AACCAAACATGAATAAAATTTCAATCTAAAATGATTTATAAGATTGTAAAACCATTTAAAGCGAG
130 AACTAAA-ATGAA-AAAATTTCAATTTAAAATCATTTATAAGATTATAAAACCACTTAAAGTGAG
* * *** * * * *
11968715 TAATGAGGCTTTCACAAGCGTGAGTGACTATAAATGGAAACATTAAATTATAAATGGATGGCTTT
193 TAATAAGGCTTTCA-AAGCATGAGTGACTATAAATGG--AC-TTTTCTTGTCAATAGAGGGCTTT
* * * *
11968780 CGCTTCATGTTT-CCAGATGCAAACATCAAATTATGATATGTTTTAACCAAAAATGTAAAATATT
254 CGCTTCACGTTTCCCA-ATGCAAA-ATCAAATTATGATTTGTTTTAACCAAAAATG-AAAAAAAT
*
11968844 TCAATTCAAAATCATTTATAAG
316 TCAATTTAAAATCATTTATAAG
* * * * * * * * * *
11968866 ATTTTAAAGCCATTTAAAGCAAGTAACAACGATTTCGAAGGTATTG-GTGACCATAAATGGATTT
1 ATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCA-TGAGTGACTATAAATGGACTT
** * * *
11968930 TTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-GATATAAACATCCAATTATGATGTACTT
65 TTCTTGTCAATGGATGGCTTTCGCTTCACGTTTC-CAGATGCAAACATCAAATTATGATCTATTT
** * * * * * *
11968994 TAACTAAAA-GTAAAAAAACT-GATTTAATATCATTTATATGATTATAAAACCACTTATAGTAAT
129 TAACTAAAATG-AAAAAATTTCAATTTAAAATCATTTATAAGATTATAAAACCACTTAAAGTGAG
** * * *
11969057 TACCAAGGCTTTCGAAGGCACT-AGTGA-TAATAAATGGACTTTTCTTGTCAA-GGTATGGCTTT
193 TAATAAGGCTTTC-AAAGCA-TGAGTGACT-ATAAATGGACTTTTCTTGTCAATAG-AGGGCTTT
* * * * ** *
11969119 TGCTTGACATTTCCCAATGCACATATCCCATTATGATTTGTTTTAACCAAAAATGAAAATAATTC
254 CGCTTCACGTTTCCCAATGCA-AAATCAAATTATGATTTGTTTTAACCAAAAATGAAAAAAATTC
11969184 AATTTAAAATCATTTATAAG
318 AATTTAAAATCATTTATAAG
* * * *
11969204 ATTATAAATCAATTTCAAGCGAGTAACTAGGCTTTTAAAGGCATGAGTGACTATAAATGGACTTT
1 ATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTT
* * * * * * * *
11969269 TCTTATGAATGGATGG-TTTTGCTTCACATTTCCCA-ATGTAAACAACAAATTATGATGTGTTTT
66 TCTTGTCAATGGATGGCTTTCGCTTCACGTTT-CCAGATGCAAACATCAAATTATGATCTATTTT
* * * * *
11969332 AACTAAAAATGAAAAAAACAGTTCAATTTAAGATGATTTATAAAATTATAAATCCACTTAAAGTG
130 AACT-AAAATG--AAAAA-ATTTCAATTTAAAATCATTTATAAGATTATAAAACCACTTAAAGTG
* ** * * * * * *
11969397 AGTAATGAGATTTTCAAAGGTATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGACTTTT
191 AGTAATAAGGCTTTCAAA-GCATGAGTGACTATAAATGGACTTTTCTTGTCAATAGAGGGCTTTC
* * * * * * * * ** ** *
11969462 GCTTCATGTTTCTCGATGCAAACATCAAATTATTA-TCG-----A-TAATAATTATTATTA-TCG
255 GCTTCACGTTTCCCAATGCAAA-ATCAAATTATGATTTGTTTTAACCAAAAATGAAAAAAATTCA
** *
11969519 A-TGCAAAT-A--T-CAA-
319 ATTTAAAATCATTTATAAG
* *
11969532 ATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCT-AATGCATGAGTGA-TGAGAAATGGACT
1 ATTATAAAACCATTTAAAGCGAGTAACTAGGCTTT-TGAAGGCATGAGTGACT-ATAAATGGACT
* * * *
11969595 TTTTTTGTCAATGGATGGCTTT-GCTTCACATTTCCTA-ATGGAAACATCAAATTATGATCT-GT
64 TTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCC-AGATGCAAACATCAAATTATGATCTATT
*
11969657 TTAACCAAAAATGAAAAAA----AA-TT---A--ATTT-TAA-A--AT-----CACTTAAAGTGA
128 TTAA-CTAAAATGAAAAAATTTCAATTTAAAATCATTTATAAGATTATAAAACCACTTAAAGTGA
* * * * * * *
11969703 GTAATAAGGGTTTCGAATGCATGAGTGACTATAAATGGACCTTTGTTATCAATGGATGGCTTTCG
192 GTAATAAGGCTTTC-AAAGCATGAGTGACTATAAATGGACTTTTCTTGTCAATAGAGGGCTTTCG
* * * * *
11969768 CTTCATGTTT-CCATATGCAAATAAT-AAATTATGATATATTTTAACCAAAAGTAAAAAAAAATT
256 CTTCACGTTTCCCA-ATGC-AA-AATCAAATTATGATTTGTTTTAACCAAAAAT-GAAAAAAA-T
11969831 TCAATTTAAAATCATTTATAAG
316 TCAATTTAAAATCATTTATAAG
* * * * * * *
11969853 ATTATAAAACCA-TTATAAGCAAGTAACAAGGCTTTTGAAGACACGAGTGATTGT-AATGGTCTT
1 ATTATAAAACCATTTA-AAGCGAGTAACTAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTT
* * * ** * * * * *
11969916 TTTTTGTCAATGAATAGCTTTTTCTTCATGCTTCTCA-ATGCAAACATCCAATTATGATATGTTT
65 TTCTTGTCAATGGATGGCTTTCGCTTCACGTTTC-CAGATGCAAACATCAAATTATGATCTATTT
* * ** * * * * *
11969980 TAACAAAAAATTAAAAAATTTTGACTTAAAATCATTTATATGATTATATAACCATTTAAAGCGAG
129 TAAC-TAAAATGAAAAAATTTCAATTTAAAATCATTTATAAGATTATAAAACCACTTAAAGTGAG
* ** * * * * **
11970045 TAATTACACTTTCGAAGACATGGGTGACTATAAATGAACTTTTCTTGTCAATGGATCGCTTTCGC
193 TAATAAGGCTTTCAAAG-CATGAGTGACTATAAATGGACTTTTCTTGTCAATAGAGGGCTTTCGC
* * ** *
11970110 TTCATGTTTCCTAATGCAAACAAT-AAATTATGAACTGTTTTAACCAAAAATGAAAAACACTTCA
257 TTCACGTTTCCCAATGC-AA-AATCAAATTATGATTTGTTTTAACCAAAAATGAAAAA-AATTCA
11970174 ATTTAAAATCATTTATAAG
319 ATTTAAAATCATTTATAAG
* * * * **
11970193 ATTAGAAAACCATTTAAAGTGAGTAA-TAAGGCTTTCGAAGGCATAAGTGACTATAAATAAACTT
1 ATTATAAAACCATTTAAAGCGAGTAACT-AGGCTTTTGAAGGCATGAGTGACTATAAATGGACTT
* * * * * * *
11970257 TTCTTGTCAATGGATGGTTTTTGCTTCATGTTGCTCA-ATGCAAATAAT-AAATTATGATTTGTT
65 TTCTTGTCAATGGATGGCTTTCGCTTCACGTTTC-CAGATGCAAA-CATCAAATTATGATCTATT
* * * * * * *
11970320 TTAAACAAAAATGAAAAAAATTCAATTT-AAATCATTTTTCATATTATAAAACCATTTCAAGTGA
128 TT-AACTAAAATGAAAAAATTTCAATTTAAAATCATTTATAAGATTATAAAACCACTTAAAGTGA
* * * * * * * *
11970384 GTAACAAGGTTTTCAAAGGCATGAGTTACTATAAATAGACTTTTCTTATCAATGGATGGCTTTCT
192 GTAATAAGGCTTTCAAA-GCATGAGTGACTATAAATGGACTTTTCTTGTCAATAGAGGGCTTTCG
* * * * ** * * * *
11970449 CGTCATGTTTCCCTATGTAAACAAGATATTTTGATTTGTTTTAACAAAAAATGAATAAAAATTTA
256 CTTCACGTTTCCCAATGCAAA-ATCAAATTATGATTTGTTTTAACCAAAAATGAA-AAAAATTCA
* ** *
11970514 GTGAAAAATTATTTATAAG
319 ATTTAAAATCATTTATAAG
* ** ** * * * ** *
11970533 ACTCGAAAAGTATTTAAA-TGAGTAACTACGCTCTCAAAGGCATGAGTTACTATAAATGGA-TTT
1 ATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTT
* * * ** * * * *
11970596 CTTTTGTCAATAGATGGCTTTCGCTTCATGTTTCTTGGTGTAAACATCCAATTATGATCTACTTT
66 -TCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCAGATGCAAACATCAAATTATGATCTATTTT
* * * *
11970661 AACCAAAAATGAAAAAAAATT-GATTTAAAATCATTTATAAGATTATAAAACCACTTAAAGGGAG
130 AA-CTAAAATG-AAAAAATTTCAATTTAAAATCATTTATAAGATTATAAAACCACTTAAAGTGAG
** * * * ** * ** * * *
11970725 TACCAAGGCTTTGAAGGCACT-AGTGACAATAAACAGACCTTTCTTGTCAAGGGA-TGTTTTTGC
193 TAATAAGGCTTTCAAAGCA-TGAGTGACTATAAATGGACTTTTCTTGTCAATAGAGGGCTTTCGC
* *** * * * *
11970788 TTCATGTTTCTTGATGCAAACATTC-AATTATGATCTATTTTAACCATAAATGAAAAGAATTCAA
257 TTCACGTTTCCCAATGCAAA-A-TCAAATTATGATTTGTTTTAACCAAAAATGAAAAAAATTCAA
*
11970852 TTGAAAATCATTTATAAG
320 TTTAAAATCATTTATAAG
*** * * * * * *
11970870 ATTATAAATTAATTTCAAGCAAGTAACAAGGCTTTTGAAGGCTTTAGTGACTATAAATGGACCTT
1 ATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTT
* * ** * ** * * *
11970935 T-TTATAAATGGATGG-TTTTTCTTCATGTTT-TGGATGCAAACAACAAATTATGATGTGTTTTA
66 TCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCAGATGCAAACATCAAATTATGATCTATTTTA
* * * * * * *
11970997 ACCAAAAATAAAAAAAAAATTCAATTTAAGATGATTTATAAGATTATAAATCCATTTAAAGTGA-
131 A-CTAAAAT--GAAAAAATTTCAATTTAAAATCATTTATAAGATTATAAAACCACTTAAAGTGAG
* * * * * * * * *
11971061 CAACAAGGCCTTCGAAGGCATGAATGACTATAAATGGACTTTTCTTGTCAATAAATGACTTTTGC
193 TAATAAGGCTTTC-AAAGCATGAGTGACTATAAATGGACTTTTCTTGTCAATAGAGGGCTTTCGC
* * * * *** *
11971126 TTCATGTTTCTCAATACAAACATCAAATTATTATCAATTTTAACCAGAAATGAAAAAAATTCAAT
257 TTCACGTTTCCCAATGCAAA-ATCAAATTATGATTTGTTTTAACCAAAAATGAAAAAAATTCAAT
* *
11971191 CTAAAATCATTTATAAA
321 TTAAAATCATTTATAAG
* * * *
11971208 ATTATAAAACCATTTAAAGTGAGTAACTAGGCTTCCT-AAGGCACGAGTGA-TGATAAATGGTCT
1 ATTATAAAACCATTTAAAGCGAGTAACTAGGCTT-TTGAAGGCATGAGTGACT-ATAAATGGACT
* * * * * * *
11971271 TGTCTTGTCAATGGATAGCTTTTGCTTCATGTTTGTCA-ATTCAAATATCAAATTATGAT-TGAT
64 TTTCTTGTCAATGGATGGCTTTCGCTTCACGTTT-CCAGATGCAAACATCAAATTATGATCT-AT
* * ** * * * *
11971334 TTTAACCAGAAATGAAAAAAATAAAATCTAAAATCATTTATAAAATAATAAAACCA-TTTAAGTG
127 TTTAACTA-AAATGAAAAAATTTCAATTTAAAATCATTTATAAGATTATAAAACCACTTAAAGTG
* * * * * * * *
11971398 AGTACTAA-GCTTTCTTAGGCATGAGCGATTATAAATGGACTTTTCTTATAAATAGATGGCTTTC
191 AGTAATAAGGCTTTC-AAAGCATGAGTGACTATAAATGGACTTTTCTTGTCAATAGAGGGCTTTC
* ** * * **
11971462 GCTTCATGTTTTTCAATGTAAAAATTAAATTAT-ATTTGTTTTAACTGAAAATGAAAAAAATTCA
255 GCTTCACGTTTCCCAATG-CAAAATCAAATTATGATTTGTTTTAACCAAAAATGAAAAAAATTCA
*
11971526 ATTTTAAAATCATTTACAAG
319 A-TTTAAAATCATTTATAAG
* * ** * * ** * *
11971546 ACTATAAAACCATTTAAAGTGAGTAGTTAGACTCTCAAAGGCATGAGTAACTATAAATGGACTTC
1 ATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTT
* * * * * * *
11971611 TCATGTCAATGGATGGCTTTCACTTCACGTTTCTAAATGCAAA-ACTCTAATTACGATTTATTTT
66 TCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCAGATGCAAACA-TCAAATTATGATCTATTTT
* ** * * *
11971675 AACAAAAAATGAATAAAATTTTGATTTAAAATTAGTTATAAGATTATAAAACCATTTAAAGTGAG
130 AAC-TAAAATGAA-AAAATTTCAATTTAAAATCATTTATAAGATTATAAAACCACTTAAAGTGAG
* ** * * * * *
11971740 CAATTAA-GCTTTTGAAGACATAAGCGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTG
193 TAA-TAAGGCTTTCAAAG-CATGAGTGACTATAAATGGACTTTTCTTGTCAATAGAGGGCTTTCG
* * * * * *** * **
11971804 CTTCATGTTTCTCGATGCAAACATCAAATTATGATCTATTTTAATTGAAAAT-AAAAAACTTTTG
256 CTTCACGTTTCCCAATGCAAA-ATCAAATTATGATTTGTTTTAACCAAAAATGAAAAAA-ATTCA
*
11971868 ATTTAAAATCATTTATAAC
319 ATTTAAAATCATTTATAAG
* * * * ** *
11971887 ATTATAAAACCATTTAAAACAAATAATTAGGCTTTCAAAGGCATGAGTGAAC-ATAAATAGACTT
1 ATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGAGTG-ACTATAAATGGACTT
* * * * * *
11971951 TTCATGTCAATCGATGGCTTTCACTTCACGTTTCCTGATACAAACATCAAATTATGATCTGTTTT
65 TTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCAGATGCAAACATCAAATTATGATCTATTTT
11972016 AACTAAGAATGAAAAAA
130 AACTAA-AATGAAAAAA
11972033 AAAATTATTT
Statistics
Matches: 3041, Mismatches: 656, Indels: 313
0.76 0.16 0.08
Matches are distributed among these distances:
304 1 0.00
305 85 0.03
306 6 0.00
307 1 0.00
310 2 0.00
311 1 0.00
312 5 0.00
313 6 0.00
314 4 0.00
315 3 0.00
316 6 0.00
317 1 0.00
319 3 0.00
320 35 0.01
321 69 0.02
322 19 0.01
324 1 0.00
325 5 0.00
326 1 0.00
327 16 0.01
328 102 0.03
329 6 0.00
330 2 0.00
332 5 0.00
333 7 0.00
334 4 0.00
335 42 0.01
336 35 0.01
337 185 0.06
338 509 0.17
339 269 0.09
340 359 0.12
341 841 0.28
342 194 0.06
343 15 0.00
344 60 0.02
345 120 0.04
346 16 0.01
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35
Consensus pattern (337 bp):
ATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTT
TCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCAGATGCAAACATCAAATTATGATCTATTTTA
ACTAAAATGAAAAAATTTCAATTTAAAATCATTTATAAGATTATAAAACCACTTAAAGTGAGTAA
TAAGGCTTTCAAAGCATGAGTGACTATAAATGGACTTTTCTTGTCAATAGAGGGCTTTCGCTTCA
CGTTTCCCAATGCAAAATCAAATTATGATTTGTTTTAACCAAAAATGAAAAAAATTCAATTTAAA
ATCATTTATAAG
Found at i:11968924 original size:174 final size:174
Alignment explanation
Indices: 11968593--11969394 Score: 443
Period size: 174 Copynumber: 4.7 Consensus size: 174
11968583 TTCCCATGTT
* * *
11968593 AATGGATGGCTTTCGCTTCACATTTCCAGATGCAAACATCCAATTATGATCTATTTTAACCAAAC
1 AATGGATGGCTTTCGCTTCACATTTCCAGATGCAAACATCAAATTATGATATATTTTAACCAAAA
* * ** *
11968658 ATGAATAAAATTTCAATCTAAAATGATTTATAAGATTGTAAAACCATTTAAAGCGAGTAATGAGG
66 ATGAATAAAATTTCAATCTAAAATCATTTATAAGATTGTAAAACCATTTAAAGCAAGTAACAACG
* *
11968723 CTTTCACAAGCGTGAGTGACTATAAATGGAAACATTAAATTATA
131 ATTTCACAAGCGTGAGTGACCATAAATGGAAACATTAAATTATA
** *
11968767 AATGGATGGCTTTCGCTTCATGTTTCCAGATGCAAACATCAAATTATGATATGTTTTAACCAAAA
1 AATGGATGGCTTTCGCTTCACATTTCCAGATGCAAACATCAAATTATGATATATTTTAACCAAAA
* * *
11968832 ATGTAA-AATATTTCAAT-TCAAAATCATTTATAAGATTTTAAAGCCATTTAAAGCAAGTAACAA
66 ATG-AATAAAATTTCAATCT-AAAATCATTTATAAGATTGTAAAACCATTTAAAGCAAGTAACAA
* * *** * *
11968895 CGATTTC-GAAG-GT-ATTGGTGACCATAAATGG--A-TTTTTCTTGTC
129 CGATTTCACAAGCGTGA---GTGACCATAAATGGAAACATTAAATTATA
* ** * * * *
11968938 AATGGATGGCTTTCGCTTCACGTTTCTC-GATATAAACATCCAATTATGATGTACTTTAACTAAA
1 AATGGATGGCTTTCGCTTCACATTTC-CAGATGCAAACATCAAATTATGATATATTTTAACCAAA
* ** * * * * * * * * * * *
11969002 AGT-AA-AAAAACT-GATTTAATATCATTTATATGATTATAAAACCACTTATAGTAATTACCAAG
65 AATGAATAAAATTTCAATCTAAAATCATTTATAAGATTGTAAAACCATTTAAAGCAAGTAACAAC
* * * ** *** * *
11969064 GCTTTCGA-AGGCACT-AGTGATAATAAATGG--AC-TTTTCTTGTC
130 GATTTC-ACAAGC-GTGAGTGACCATAAATGGAAACATTAAATTATA
* * * * ** * *
11969106 AA-GGTATGGCTTTTGCTTGACATTTCCCA-ATGCACATATCCCATTATGATTTGTTTTAACCAA
1 AATGG-ATGGCTTTCGCTTCACATTT-CCAGATGCAAACATCAAATTATGATATATTTTAACCAA
* * * * * * *
11969169 AAATGAA-AATAA-TTCAATTTAAAATCATTTATAAGATTATAAATCAATTTCAAGCGAGTAACT
64 AAATGAATAA-AATTTCAATCTAAAATCATTTATAAGATTGTAAAACCATTTAAAGCAAGTAACA
* * * * * *** *
11969232 AGGCTTTTA-AAGGCATGAGTGACTATAAATGG--AC-TTTTCTTATG
128 ACGATTTCACAA-GCGTGAGTGACCATAAATGGAAACATTAAATTATA
* * * * * *
11969276 AATGGATGG-TTTTGCTTCACATTTCCCA-ATGTAAACAACAAATTATGATGTGTTTTAACTAAA
1 AATGGATGGCTTTCGCTTCACATTT-CCAGATGCAAACATCAAATTATGATATATTTTAACCAAA
* * * * * * * * *
11969339 AATGAAAAAAACAGTTCAATTTAAGATGATTTATAAAATTATAAATCCACTTAAAG
65 AATG-AATAAA-ATTTCAATCTAAAATCATTTATAAGATTGTAAAACCATTTAAAG
11969395 TGAGTAATGA
Statistics
Matches: 503, Mismatches: 100, Indels: 52
0.77 0.15 0.08
Matches are distributed among these distances:
167 2 0.00
168 113 0.22
169 67 0.13
170 78 0.16
171 69 0.14
172 40 0.08
173 4 0.01
174 128 0.25
175 2 0.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (174 bp):
AATGGATGGCTTTCGCTTCACATTTCCAGATGCAAACATCAAATTATGATATATTTTAACCAAAA
ATGAATAAAATTTCAATCTAAAATCATTTATAAGATTGTAAAACCATTTAAAGCAAGTAACAACG
ATTTCACAAGCGTGAGTGACCATAAATGGAAACATTAAATTATA
Found at i:11969728 original size:149 final size:153
Alignment explanation
Indices: 11969531--11969844 Score: 367
Period size: 149 Copynumber: 2.1 Consensus size: 153
11969521 GCAAATATCA
* * * * *
11969531 AATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCTAATGCATGAGTGA-TGAGAAATGGACT
1 AATTTTAAAATCACTTAAAGCGAGTAACTAGGCTTTCGAATGCATGAGTGACT-AGAAATGGACC
* * * * *
11969595 TTTTTTGTCAATGGATGGCTTT-GCTTCACATTTCC-TAATGGAAA-CATCAAATTATGATCT-G
65 TTTGTTATCAATGGATGGCTTTCGCTTCACATTTCCAT-ATGCAAATAAT-AAATTATGATATAG
*
11969656 TTTAACCAAAAATGAAAAAAAA-TT-
128 TTTAACCAAAAATAAAAAAAAATTTC
* * *
11969680 AATTTTAAAATCACTTAAAGTGAGTAA-TAAGGGTTTCGAATGCATGAGTGACTATAAATGGACC
1 AATTTTAAAATCACTTAAAGCGAGTAACT-AGGCTTTCGAATGCATGAGTGACTAGAAATGGACC
** *
11969744 TTTGTTATCAATGGATGGCTTTCGCTTCATGTTTCCATATGCAAATAATAAATTATGATATATTT
65 TTTGTTATCAATGGATGGCTTTCGCTTCACATTTCCATATGCAAATAATAAATTATGATATAGTT
*
11969809 TAACCAAAAGTAAAAAAAAATTTC
130 TAACCAAAAATAAAAAAAAATTTC
11969833 AA-TTTAAAATCA
1 AATTTTAAAATCA
11969845 TTTATAAGAT
Statistics
Matches: 139, Mismatches: 18, Indels: 13
0.82 0.11 0.08
Matches are distributed among these distances:
148 1 0.01
149 72 0.52
150 29 0.21
151 23 0.17
152 12 0.09
153 2 0.01
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.34
Consensus pattern (153 bp):
AATTTTAAAATCACTTAAAGCGAGTAACTAGGCTTTCGAATGCATGAGTGACTAGAAATGGACCT
TTGTTATCAATGGATGGCTTTCGCTTCACATTTCCATATGCAAATAATAAATTATGATATAGTTT
AACCAAAAATAAAAAAAAATTTC
Found at i:11971295 original size:170 final size:169
Alignment explanation
Indices: 11969685--11972067 Score: 1954
Period size: 170 Copynumber: 14.0 Consensus size: 169
11969675 AAATTAATTT
* * * * * * *
11969685 TAAAATCACTTAAAGTGAGTAA-TAAGGGTTTCGAATGCATGAGTGACTATAAATGGACCTTTGT
1 TAAAACCATTTAAAGTGAGTAACT-A-GGCTTCTAAGGCATGAGTGACTATAAATGGACTTTTCT
* * * *
11969749 TATCAATGGATGGCTTTCGCTTCATGTTTC-CATATGCAAATAAT-AAATTATGATATATTTTAA
64 TGTCAATGGATGGCTTTTGCTTCATGTTTCTCA-ATGCAAA-CATCAAATTATGATCTATTTTAA
* *
11969812 CCAAAAGTAAAAAAAAATTTCAATTTAAAATCATTTATAAGATTA
127 CCAAAAAT-GAAAAAAA-TTCAATTTAAAATCATTTATAAGATTA
** * * * * * * * *
11969857 TAAAACCA-TTATAAGCAAGTAACAAGGCTTTTGAAGACACGAGTGATTGT-AATGGTCTTTTTT
1 TAAAACCATTTA-AAGTGAGTAACTAGGCTTCT-AAGGCATGAGTGACTATAAATGGACTTTTCT
* * * * * * * *
11969920 TGTCAATGAATAGCTTTTTCTTCATGCTTCTCAATGCAAACATCCAATTATGATATGTTTTAACA
64 TGTCAATGGATGGCTTTTGCTTCATGTTTCTCAATGCAAACATCAAATTATGATCTATTTTAACC
* * ** * *
11969985 AAAAATTAAAAAATTTTGACTTAAAATCATTTATATGATTA
129 AAAAATGAAAAAAATTCAATTTAAAATCATTTATAAGATTA
* * * ** * * * *
11970026 TATAACCATTTAAAGCGAGTAATTACACTTTCGAAGACATGGGTGACTATAAATGAACTTTTCTT
1 TAAAACCATTTAAAGTGAGTAACTAGGC-TTCTAAGGCATGAGTGACTATAAATGGACTTTTCTT
* * * *
11970091 GTCAATGGATCGCTTTCGCTTCATGTTTC-CTAATGCAAACAAT-AAATTATGAACTGTTTTAAC
65 GTCAATGGATGGCTTTTGCTTCATGTTTCTC-AATGCAAAC-ATCAAATTATGATCTATTTTAAC
*
11970154 CAAAAATGAAAAACACTTCAATTTAAAATCATTTATAAGATTA
128 CAAAAATGAAAAA-AATTCAATTTAAAATCATTTATAAGATTA
* * * **
11970197 GAAAACCATTTAAAGTGAGTAA-TAAGGCTTTCGAAGGCATAAGTGACTATAAATAAACTTTTCT
1 TAAAACCATTTAAAGTGAGTAACT-AGGC-TTCTAAGGCATGAGTGACTATAAATGGACTTTTCT
* * * * * *
11970261 TGTCAATGGATGGTTTTTGCTTCATGTTGCTCAATGCAAATAAT-AAATTATGATTTGTTTTAAA
64 TGTCAATGGATGGCTTTTGCTTCATGTTTCTCAATGCAAA-CATCAAATTATGATCTATTTTAAC
* * *
11970325 CAAAAATGAAAAAAATTCAATTT-AAATCATTTTTCATATTA
128 CAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAGATTA
* * * * * *
11970366 TAAAACCATTTCAAGTGAGTAACAAGGTTTTCAAAGGCATGAGTTACTATAAATAGACTTTTCTT
1 TAAAACCATTTAAAGTGAGTAACTAGG-CTTCTAAGGCATGAGTGACTATAAATGGACTTTTCTT
* * * * * ** * * * * *
11970431 ATCAATGGATGGCTTTCT-CGTCATGTTTCCCTATGTAAACAAGATATTTTGATTTGTTTTAACA
65 GTCAATGGATGGCTTT-TGCTTCATGTTTCTCAATGCAAACATCAAATTATGATCTATTTTAACC
* * ** * * *
11970495 AAAAATGAATAAAAATTTAGTGAAAAATTATTTATAAGACTC
129 AAAAATGAA-AAAAATTCAATTTAAAATCATTTATAAGATTA
* ** * * * *
11970537 GAAAAGTATTTAAA-TGAGTAACTACGCTCTCAAAGGCATGAGTTACTATAAATGGA-TTTCTTT
1 TAAAACCATTTAAAGTGAGTAACTAGGCT-TCTAAGGCATGAGTGACTATAAATGGACTTT-TCT
* * *** * * *
11970600 TGTCAATAGATGGCTTTCGCTTCATGTTTCTTGGTGTAAACATCCAATTATGATCTACTTTAACC
64 TGTCAATGGATGGCTTTTGCTTCATGTTTCTCAATGCAAACATCAAATTATGATCTATTTTAACC
*
11970665 AAAAATGAAAAAAAATT-GATTTAAAATCATTTATAAGATTA
129 AAAAATG-AAAAAAATTCAATTTAAAATCATTTATAAGATTA
* * * * * ** *
11970706 TAAAACCACTTAAAGGGAGTACCAAGGCTT-TGAAGGCACT-AGTGACAATAAACAGACCTTTCT
1 TAAAACCATTTAAAGTGAGTAACTAGGCTTCT-AAGGCA-TGAGTGACTATAAATGGACTTTTCT
* * **
11970769 TGTCAAGGGAT-GTTTTTGCTTCATGTTTCTTGATGCAAACATTC-AATTATGATCTATTTTAAC
64 TGTCAATGGATGGCTTTTGCTTCATGTTTCTCAATGCAAACA-TCAAATTATGATCTATTTTAAC
* * *
11970832 CATAAATGAAAAGAATTCAATTGAAAATCATTTATAAGATTA
128 CAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAGATTA
*** * ** * * * * *
11970874 TAAATTAATTTCAAGCAAGTAACAAGGCTTTTGAAGGCTTTAGTGACTATAAATGGACCTTT-TT
1 TAAAACCATTTAAAGTGAGTAACTAGGCTTCT-AAGGCATGAGTGACTATAAATGGACTTTTCTT
* * * ** * * *
11970938 ATAAATGGATGG-TTTTTCTTCATGTTT-TGGATGCAAACAACAAATTATGATGTGTTTTAACCA
65 GTCAATGGATGGCTTTTGCTTCATGTTTCTCAATGCAAACATCAAATTATGATCTATTTTAACCA
* * *
11971001 AAAATAAAAAAAAAATTCAATTTAAGATGATTTATAAGATTA
130 AAAAT--GAAAAAAATTCAATTTAAAATCATTTATAAGATTA
* * * * *
11971043 TAAATCCATTTAAAGTGA-CAACAAGGCCTTCGAAGGCATGAATGACTATAAATGGACTTTTCTT
1 TAAAACCATTTAAAGTGAGTAACTAGG-CTTCTAAGGCATGAGTGACTATAAATGGACTTTTCTT
** * * * *
11971107 GTCAATAAATGACTTTTGCTTCATGTTTCTCAATACAAACATCAAATTATTATCAATTTTAACCA
65 GTCAATGGATGGCTTTTGCTTCATGTTTCTCAATGCAAACATCAAATTATGATCTATTTTAACCA
* * *
11971172 GAAATGAAAAAAATTCAATCTAAAATCATTTATAAAATTA
130 AAAATGAAAAAAATTCAATTTAAAATCATTTATAAGATTA
* * *
11971212 TAAAACCATTTAAAGTGAGTAACTAGGCTTCCTAAGGCACGAGTGA-TGATAAATGGTCTTGTCT
1 TAAAACCATTTAAAGTGAGTAACTAGGCTT-CTAAGGCATGAGTGACT-ATAAATGGACTTTTCT
* * * *
11971276 TGTCAATGGATAGCTTTTGCTTCATGTTTGTCAATTCAAATATCAAATTATGAT-TGATTTTAAC
64 TGTCAATGGATGGCTTTTGCTTCATGTTTCTCAATGCAAACATCAAATTATGATCT-ATTTTAAC
* ** * * *
11971340 CAGAAATGAAAAAAATAAAATCTAAAATCATTTATAAAATAA
128 CAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAGATTA
* * * *
11971382 TAAAACCATTT-AAGTGAGT-ACTAAGCTTTCTTAGGCATGAGCGATTATAAATGGACTTTTCTT
1 TAAAACCATTTAAAGTGAGTAACTAGGC-TTCTAAGGCATGAGTGACTATAAATGGACTTTTCTT
* * * * * * * * * * **
11971445 ATAAATAGATGGCTTTCGCTTCATGTTTTTCAATGTAAAAATTAAATTAT-ATTTGTTTTAACTG
65 GTCAATGGATGGCTTTTGCTTCATGTTTCTCAATGCAAACATCAAATTATGATCTATTTTAACCA
* *
11971509 AAAATGAAAAAAATTCAATTTTAAAATCATTTACAAGACTA
130 AAAATGAAAAAAATTCAA-TTTAAAATCATTTATAAGATTA
** * * * * *
11971550 TAAAACCATTTAAAGTGAGTAGTTAGACTCTCAAAGGCATGAGTAACTATAAATGGACTTCTCAT
1 TAAAACCATTTAAAGTGAGTAACTAGGCT-TCTAAGGCATGAGTGACTATAAATGGACTTTTCTT
** * * * * * *
11971615 GTCAATGGATGGCTTTCACTTCACGTTTCTAAATGCAAA-ACTCTAATTACGATTTATTTTAACA
65 GTCAATGGATGGCTTTTGCTTCATGTTTCTCAATGCAAACA-TCAAATTATGATCTATTTTAACC
* ** * *
11971679 AAAAATGAATAAAATTTTGATTTAAAATTAGTTATAAGATTA
129 AAAAATGAA-AAAAATTCAATTTAAAATCATTTATAAGATTA
* * * * * * *
11971721 TAAAACCATTTAAAGTGAGCAATTAAGCTTTTGAAGACATAAGCGACTATAAATGGACTTTTCTT
1 TAAAACCATTTAAAGTGAGTAACTAGGCTTCT-AAGGCATGAGTGACTATAAATGGACTTTTCTT
* ***
11971786 GTCAATGGATGGCTTTTGCTTCATGTTTCTCGATGCAAACATCAAATTATGATCTATTTTAATTG
65 GTCAATGGATGGCTTTTGCTTCATGTTTCTCAATGCAAACATCAAATTATGATCTATTTTAACCA
* ** *
11971851 AAAAT-AAAAAACTTTTGATTTAAAATCATTTATAACATTA
130 AAAATGAAAAAA-ATTCAATTTAAAATCATTTATAAGATTA
*** * * * * *
11971891 TAAAACCATTTAAAACAAATAATTAGGCTTTCAAAGGCATGAGTGAAC-ATAAATAGACTTTTCA
1 TAAAACCATTTAAAGTGAGTAACTAGGC-TTCTAAGGCATGAGTG-ACTATAAATGGACTTTTCT
* ** * * * *
11971955 TGTCAATCGATGGCTTTCACTTCACGTTTC-CTGATACAAACATCAAATTATGATCTGTTTTAAC
64 TGTCAATGGATGGCTTTTGCTTCATGTTTCTC-AATGCAAACATCAAATTATGATCTATTTTAAC
* *
11972019 TAAGAATGAAAAAAAAAATT--ATTTCAAAATCATTTATAA-AGTTA
128 CAAAAATG---AAAAAAATTCAATTT-AAAATCATTTATAAGA-TTA
11972063 TAAAA
1 TAAAA
11972068 TGTCATAGCC
Statistics
Matches: 1786, Mismatches: 359, Indels: 132
0.78 0.16 0.06
Matches are distributed among these distances:
166 1 0.00
167 66 0.04
168 254 0.14
169 402 0.23
170 568 0.32
171 426 0.24
172 61 0.03
173 2 0.00
174 6 0.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (169 bp):
TAAAACCATTTAAAGTGAGTAACTAGGCTTCTAAGGCATGAGTGACTATAAATGGACTTTTCTTG
TCAATGGATGGCTTTTGCTTCATGTTTCTCAATGCAAACATCAAATTATGATCTATTTTAACCAA
AAATGAAAAAAATTCAATTTAAAATCATTTATAAGATTA
Found at i:11973128 original size:42 final size:43
Alignment explanation
Indices: 11973069--11973244 Score: 164
Period size: 42 Copynumber: 4.2 Consensus size: 43
11973059 CAGCTCATAT
* *
11973069 GCACTCCCACTAGCACATGGCTAGGTCAGCA-TCGGCTTATGC
1 GCACTCCCACTAGCACATAGCCAGGTCAGCATTCGGCTTATGC
* *
11973111 GCACTCCTACTCA-CACATAGCCAGGTCAGCATTCGGCTTATGT
1 GCACTCCCACT-AGCACATAGCCAGGTCAGCATTCGGCTTATGC
* * * *
11973154 ACACTACCC-CTTGCACATAACCAAGTCAGCATT-GGCTTATGC
1 GCACT-CCCACTAGCACATAGCCAGGTCAGCATTCGGCTTATGC
* * * * * *
11973196 GCACTCCCCCTCGCACGTAGTCGGGTCAACA-TCGGCTTATGC
1 GCACTCCCACTAGCACATAGCCAGGTCAGCATTCGGCTTATGC
*
11973238 ACACTCC
1 GCACTCC
11973245 TTGTAAAACC
Statistics
Matches: 109, Mismatches: 19, Indels: 12
0.78 0.14 0.09
Matches are distributed among these distances:
41 4 0.04
42 68 0.62
43 35 0.32
44 2 0.02
ACGTcount: A:0.23, C:0.35, G:0.19, T:0.23
Consensus pattern (43 bp):
GCACTCCCACTAGCACATAGCCAGGTCAGCATTCGGCTTATGC
Found at i:11977228 original size:17 final size:16
Alignment explanation
Indices: 11977208--11977250 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
11977198 TTATTTTTAT
11977208 TTTTCTCTTTTTTTTCC
1 TTTT-TCTTTTTTTTCC
* *
11977225 TTTTTGTTTTTTTTCT
1 TTTTTCTTTTTTTTCC
11977241 TTCTTTCTTT
1 TT-TTTCTTT
11977251 CTTTCTTCCC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 12 0.55
17 10 0.45
ACGTcount: A:0.00, C:0.16, G:0.02, T:0.81
Consensus pattern (16 bp):
TTTTTCTTTTTTTTCC
Found at i:11982477 original size:39 final size:39
Alignment explanation
Indices: 11982434--11982525 Score: 132
Period size: 39 Copynumber: 2.4 Consensus size: 39
11982424 AAATACATTA
*
11982434 TCGCTGCAGCGAGAAACTTTCTGTTTCTAGG-TAGCAATT
1 TCGCTGCAGCGAGAAACATTCTGTTTCTAGGTTA-CAATT
* *
11982473 TCGCTGCAGCAAGAAACATTCTGTTTCTGGGTTACAATT
1 TCGCTGCAGCGAGAAACATTCTGTTTCTAGGTTACAATT
*
11982512 TCACTGCAGCGAGA
1 TCGCTGCAGCGAGA
11982526 TTGAATCTCG
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
39 45 0.96
40 2 0.04
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (39 bp):
TCGCTGCAGCGAGAAACATTCTGTTTCTAGGTTACAATT
Found at i:11985296 original size:121 final size:120
Alignment explanation
Indices: 11985082--11985322 Score: 464
Period size: 121 Copynumber: 2.0 Consensus size: 120
11985072 CAGACAGTAG
11985082 GTTACTATCACCAATACTGGGTGTATATATGGGCCACTTGTCATTGTAATTATTATTGTACTTTA
1 GTTACTATCACCAATACTGGGTGTATATATGGGCCACTTGTCATTGTAATTATTATTGTACTTTA
11985147 TAACTTTGTAAATTATTGTATGTATGAATTTATTTTATTCTCATGCTACAAAAAT
66 TAACTTTGTAAATTATTGTATGTATGAATTTATTTTATTCTCATGCTACAAAAAT
*
11985202 NGTTACTATCACCAATACTGGGTGTATTTATGGGCCACTTGTCATTGTAATTATTATTGTACTTT
1 -GTTACTATCACCAATACTGGGTGTATATATGGGCCACTTGTCATTGTAATTATTATTGTACTTT
11985267 ATAACTTTGTAAATTATTGTATGTATGAATTTATTTTATTCTCATGCTACAAAAAT
65 ATAACTTTGTAAATTATTGTATGTATGAATTTATTTTATTCTCATGCTACAAAAAT
11985323 TATTTATGTA
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
121 119 1.00
ACGTcount: A:0.29, C:0.12, G:0.13, T:0.44
Consensus pattern (120 bp):
GTTACTATCACCAATACTGGGTGTATATATGGGCCACTTGTCATTGTAATTATTATTGTACTTTA
TAACTTTGTAAATTATTGTATGTATGAATTTATTTTATTCTCATGCTACAAAAAT
Found at i:11986508 original size:35 final size:37
Alignment explanation
Indices: 11986463--11986537 Score: 111
Period size: 35 Copynumber: 2.1 Consensus size: 37
11986453 GGTCGTGACA
11986463 TTTTTCCTCTCAAAATTTGT-AGC-AAAA-CTCTCTCT
1 TTTTTCCTCTCAAAATTT-TAAGCAAAAACCTCTCTCT
11986498 TTTTTCCTCTCAAAATTTTACAGCAAAAACCTCTCTCT
1 TTTTTCCTCTCAAAATTTTA-AGCAAAAACCTCTCTCT
11986536 TT
1 TT
11986538 ACTCCTCTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
34 1 0.03
35 18 0.50
36 3 0.08
37 4 0.11
38 10 0.28
ACGTcount: A:0.27, C:0.27, G:0.04, T:0.43
Consensus pattern (37 bp):
TTTTTCCTCTCAAAATTTTAAGCAAAAACCTCTCTCT
Found at i:11988574 original size:170 final size:170
Alignment explanation
Indices: 11987975--11989620 Score: 1349
Period size: 171 Copynumber: 9.7 Consensus size: 170
11987965 TATAAAATCA
* * *
11987975 TTTAACAAAAAATGAATACAATTTTGATTTAAAGTCATTTATAAGATTATAAAACCATTTAAAGT
1 TTTAACCAAAAATGAA-AAAATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGT
* ** * * *
11988040 GAGCAATTATCCTTTTGAACGCATGAGT-A-TA-AAAGGGACTTTTCTTGTCAATGGATGGCTTT
65 GAGCAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTT
* * * *
11988102 CGCTTCACA-TTTCCCAATGGC-AACATCCAATTATAATTTGT
130 -GCTTCACAGTTTCCTAAT-GCAAACATCAAATTATGATCTGT
* * * *
11988143 TTTAACCAAAAATGAGAAAATTTTGATTTAAAAT-AGTTTATAAGACTATAAAATCATTTAAAGC
1 TTTAACCAAAAATGAAAAAATTTTGATTTAAAATCA-TTTATAAGATTATAAAACCATTTAAAGT
* * * * *
11988207 GAGTAACTAGGCTTTCAAAGGTATGAGTGACTATAAATGGACTTTTCTTGTTAGTGGATGGCTTT
65 GAGCAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTT
* * *
11988272 -CACTC-CATGTTTCCTGATGCAAACATCAAATTATGATCT-A
130 GC-TTCACA-GTTTCCTAATGCAAACATCAAATTATGATCTGT
* ** * *
11988312 TTTAAACAAAAATGAAAAACA-TTCAATTTAAAATCATTTATAA-AGTTATAAAATCACTTAAAG
1 TTTAACCAAAAATGAAAAA-ATTTTGATTTAAAATCATTTATAAGA-TTATAAAACCATTTAAAG
* * * * * ** * *
11988375 CGAGTAACCAAGTTTTCGATTGCATGAGTGAGTATAAATGGACTTTTCTTGTTAATGGATGGCTT
64 TGAGCAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTT
* * * *
11988440 TGCTTCACAG-TTCCCAATGCAAACATCCAATTACGATATGTT
129 TGCTTCACAGTTTCCTAATGCAAACATCAAATTATGATCTG-T
* * *
11988482 TTTAACTAAAAATGAAAAAATTTTGATTTAAATTCATTTATAAGATTATAAAACCATTAAAAGTG
1 TTTAACCAAAAATGAAAAAATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTG
* * * * *
11988547 AGCAATTAGGCTTTCGAAGGTATGAGTGGCTATAAATGGACTTTTCTTGTTAATCGATGGCTTTC
66 AGCAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTT-
* * * * * *
11988612 GTTTCAC-TTTTCTTGATGCATACATCAAATTATGATCTAT
130 GCTTCACAGTTTCCTAATGCAAACATCAAATTATGATCTGT
* * * ** *
11988652 TTTAGCCAAAAATAAAAAAAAATTCT-ATTTAAAATCATTTATGAAG-TTATAAAATAACTTAAA
1 TTTAACCAAAAAT--GAAAAAATTTTGATTTAAAATCATTTAT-AAGATTATAAAACCATTTAAA
* * * * * *
11988715 GTGAGCAACAAGGCTTTCG-AGTGCATGAGTGACTATAAATAGACTTCTCTTGTGAATGAATGTC
63 GTGAGCAACTAGGCTTTCGAAG-GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC
* * * * * *
11988779 ATT-CAATTCA-TGTTTCTTGATGCAAACATCCAATTATGATCTAT
127 TTTGC--TTCACAGTTTCCTAATGCAAACATCAAATTATGATCTGT
* * * * * * *
11988823 TTTAACTAGAAATAAAAAAAATTTTTGATTCAAAATTACTTATAAGATTATAAAACCATTTACAG
1 TTTAACCAAAAAT-GAAAAAA-TTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAG
* * * * * * *
11988888 TGAGCAACTAGGCTTTCAGAA-ACAAGAGTGACTATAAATGGTCCTTTCCTATCAATGGATAGCT
64 TGAGCAACTAGGCTTTC-GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCT
* * * *
11988952 TTCGCTT-A-TGTTTCCTAGTGCAAACATCTAATTATGATCTAT
128 TT-GCTTCACAGTTTCCTAATGCAAACATCAAATTATGATCTGT
* * * * * *
11988994 TTAAATCAGAAATGAATAAAAATTTGTTTTATAATCATTTATAAGATTATAAAACCATTTAAAGT
1 TTTAACCAAAAATGAA-AAAATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGT
* * * * * * *
11989059 AAGTAACTCGGCTTTTGAAGGCATGAGTCACTATAAATTGACTTTTCTTCTCAATGGATGGCTTT
65 GAGCAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTT
* * * * ** *
11989124 CACTTCTC-GTTTCCCCAATGTAAACATTTACTTATGATCTGT
130 -GCTTCACAGTTT-CCTAATGCAAACATCAAATTATGATCTGT
* * * * ***
11989166 TTTAACCGAAAATGAAAAAAATTTTGACCTAAAAATTATTTATAAGATTATAAAATTGTTTAAAG
1 TTTAACCAAAAATG-AAAAAATTTTGA-TTTAAAATCATTTATAAGATTATAAAACCATTTAAAG
** * * * * * *
11989231 CAAGTAACTACGG-TTTTGAAGGTATGAGTGACTATAAATGGAATTCTCTTGTCAATGGATGGGT
64 TGAGCAACTA-GGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGAT-GGC
* * * * *
11989295 TTTGCTTCAC-GTTTCTTGATGCAAAAAATCAAATAATGTTCTGT
127 TTTGCTTCACAGTTTCCTAATGC-AAACATCAAATTATGATCTGT
* ** *
11989339 TTTAACCAAAAATTGAAAACA-TTCAATTCAAAATCATTTATAA-AGTTATAAAACCATTTAAAG
1 TTTAACCAAAAA-TGAAAAAATTTTGATTTAAAATCATTTATAAGA-TTATAAAACCATTTAAAG
* ** * * *
11989402 CGAATAACTAAGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTGGTCAAT-GAGTGGCT
64 TGAGCAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGA-TGGC-
* * *
11989466 TTTGCTTCAC-CTTTCCCAATGTAAACATCAAATTATGATCTGT
127 TTTGCTTCACAGTTTCCTAATGCAAACATCAAATTATGATCTGT
* ** * *
11989509 TTTAACGAAAAATGGAAAACAA-TTCAATTTAAAATCATTTATAA-AGTTATAGAACCACTTAAA
1 TTTAACCAAAAAT-GAAAA-AATTTTGATTTAAAATCATTTATAAGA-TTATAAAACCATTTAAA
* * **
11989572 G-CATTCAAGAAGGCTTT-GAAGGCATGAGTGACTATAAATGGACTTTTCT
63 GTGA-GCAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCT
11989621 GTTGATCCCA
Statistics
Matches: 1191, Mismatches: 236, Indels: 100
0.78 0.15 0.07
Matches are distributed among these distances:
166 1 0.00
167 61 0.05
168 43 0.04
169 122 0.10
170 345 0.29
171 349 0.29
172 137 0.12
173 122 0.10
174 11 0.01
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35
Consensus pattern (170 bp):
TTTAACCAAAAATGAAAAAATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTG
AGCAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTG
CTTCACAGTTTCCTAATGCAAACATCAAATTATGATCTGT
Found at i:11989262 original size:343 final size:340
Alignment explanation
Indices: 11987974--11989620 Score: 1550
Period size: 343 Copynumber: 4.8 Consensus size: 340
11987964 ATATAAAATC
* * * * *
11987974 ATTT-AACAAAAAATGAATACAATTTTGATTTAAAGTCATTTATAAGATTATAAAACCATTTAAA
1 ATTTAAACCAAAAATGAA-AAAAATTTAATTTAAAATCATTTATAAGATTATAAAACCATTTAAA
* * ** * *
11988038 GTGAGCAATTATCCTTTTGAACGCATGAGT-A-TA-AAAGGGACTTTTCTTGTCAATGGATGGCT
65 GTGAGTAACTAAGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCT
* * * *
11988100 TTCGCTTCACATTTCCCAATGGC-AACATCCAATTATAATTTGTTTTAACCAAAAATGAGAAAAT
130 TTCGCTTCACGTTTCCCAAT-GCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAAT
* * * *
11988164 TTTGATTTAAAA-TAGTTTATAAGACTATAAAATCATTTAAAGCGAGTAACTAGGCTTTCAAAGG
194 TTTGATTTAAAATTA-TTTATAAGATTATAAAACCATTTAAAGCGAGCAACTAGGCTTTCGAAGG
* * * * *
11988228 TATGAGTGACTATAAATGGACTTTTCTTGTTAGTGGATGGCTTTCACTCCATGTTTCCTGATGCA
258 TATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTTGATGCA
11988293 AACATCAAATTATGATCT
323 AACATCAAATTATGATCT
* * * *
11988311 ATTTAAA-CAAAAATGAAAAACATTCAATTTAAAATCATTTATAA-AGTTATAAAATCACTTAAA
1 ATTTAAACCAAAAATGAAAAAAATTTAATTTAAAATCATTTATAAGA-TTATAAAACCATTTAAA
* * ** * *
11988374 GCGAGTAACCAAG-TTTTCGATTGCATGAGTGAGTATAAATGGACTTTTCTTGTTAATGGATGGC
65 GTGAGTAACTAAGCTTTT-GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC
* * *
11988438 TTT-GCTTCACAG-TTCCCAATGCAAACATCCAATTACGATATGTTTTTAACTAAAAATGAAAAA
129 TTTCGCTTCAC-GTTTCCCAATGCAAACATCCAATTATGATCTG-TTTTAACCAAAAATGAAAAA
* * *
11988501 ATTTTGATTT-AAATTCATTTATAAGATTATAAAACCATTAAAAGTGAGCAATTAGGCTTTCGAA
192 ATTTTGATTTAAAATT-ATTTATAAGATTATAAAACCATTTAAAGCGAGCAACTAGGCTTTCGAA
* * * *
11988565 GGTATGAGTGGCTATAAATGGACTTTTCTTGTTAATCGATGGCTTTCGTTTCACT-TTTCTTGAT
256 GGTATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCA-TGTTTCTTGAT
*
11988629 GCATACATCAAATTATGATCT
320 GCAAACATCAAATTATGATCT
* * * ** *
11988650 ATTTTAGCCAAAAATAAAAAAAAATTCT-ATTTAAAATCATTTATGAAG-TTATAAAATAACTTA
1 ATTTAAACCAAAAAT-GAAAAAAATT-TAATTTAAAATCATTTAT-AAGATTATAAAACCATTTA
* * * * * *
11988713 AAGTGAGCAAC-AAGGCTTTCG-AGTGCATGAGTGACTATAAATAGACTTCTCTTGTGAATGAAT
63 AAGTGAGTAACTAA-GCTTTTGAAG-GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGAT
* * ** * *** * * * *
11988776 GTCATTCAATTCATGTTTCTTGATGCAAACATCCAATTATGATCTATTTTAACTAGAAATAAAAA
126 GGCTTTCGCTTCACGTTTCCCAATGCAAACATCCAATTATGATCTGTTTTAACCAAAAAT-GAAA
* * * *
11988841 AAATTTTTGATTCAAAATTACTTATAAGATTATAAAACCATTTACAGTGAGCAACTAGGCTTTCA
190 AAA-TTTTGATTTAAAATTATTTATAAGATTATAAAACCATTTAAAGCGAGCAACTAGGCTTTC-
** * * * * * * *
11988906 GAA-ACAAGAGTGACTATAAATGGTCCTTTCCTATCAATGGATAGCTTTCGCTT-ATGTTTCCT-
253 GAAGGTATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTTG
*
11988968 AGTGCAAACATCTAATTATGATCT
318 A-TGCAAACATCAAATTATGATCT
* * ** *
11988992 ATTTAAATCAGAAATGAATAAAAATTTGTTTTATAATCATTTATAAGATTATAAAACCATTTAAA
1 ATTTAAACCAAAAATGAA-AAAAATTTAATTTAAAATCATTTATAAGATTATAAAACCATTTAAA
* ** * * *
11989057 GTAAGTAACTCGGCTTTTGAAGGCATGAGTCACTATAAATTGACTTTTCTTCTCAATGGATGGCT
65 GTGAGTAACTAAGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCT
* * * ** * *
11989122 TTCACTTCTCGTTTCCCCAATGTAAACATTTACTTATGATCTGTTTTAACCGAAAATGAAAAAAA
130 TTCGCTTCACGTTT-CCCAATGCAAACATCCAATTATGATCTGTTTTAACCAAAAATG-AAAAAA
* * *** * * *
11989187 TTTTGACCTAAAAATTATTTATAAGATTATAAAATTGTTTAAAGCAAGTAACTACGG-TTTTGAA
193 TTTTGA-TTTAAAATTATTTATAAGATTATAAAACCATTTAAAGCGAGCAACTA-GGCTTTCGAA
* * * * *
11989251 GGTATGAGTGACTATAAATGGAATTCTCTTGTCAATGGATGGGTTTTGCTTCACGTTTCTTGATG
256 GGTATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTTGATG
* * *
11989316 CAAAAAATCAAATAATGTTCT
321 C-AAACATCAAATTATGATCT
* * * * *
11989337 GTTTTAACCAAAAATTG-AAAACATTCAATTCAAAATCATTTATAA-AGTTATAAAACCATTTAA
1 ATTTAAACCAAAAA-TGAAAAAAATTTAATTTAAAATCATTTATAAGA-TTATAAAACCATTTAA
* * ** *
11989400 AGCGAATAACTAAGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTGGTCAAT-GAGTGG
64 AGTGAGTAACTAAGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGA-TGG
* * * * *
11989464 CTTTTGCTTCACCTTTCCCAATGTAAACATCAAATTATGATCTGTTTTAACGAAAAATGGAAAAC
128 CTTTCGCTTCACGTTTCCCAATGCAAACATCCAATTATGATCTGTTTTAACCAAAAAT-GAAAA-
** * * * * **
11989529 AA-TTCAATTTAAAATCATTTATAA-AGTTATAGAACCACTTAAAGC-ATTCAAGAAGGCTTT-G
191 AATTTTGATTTAAAATTATTTATAAGA-TTATAAAACCATTTAAAGCGA-GCAACTAGGCTTTCG
*
11989590 AAGGCATGAGTGACTATAAATGGACTTTTCT
254 AAGGTATGAGTGACTATAAATGGACTTTTCT
11989621 GTTGATCCCA
Statistics
Matches: 1058, Mismatches: 203, Indels: 94
0.78 0.15 0.07
Matches are distributed among these distances:
335 5 0.00
336 53 0.05
337 16 0.02
338 38 0.04
339 178 0.17
340 11 0.01
341 142 0.13
342 213 0.20
343 251 0.24
344 122 0.12
345 27 0.03
346 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35
Consensus pattern (340 bp):
ATTTAAACCAAAAATGAAAAAAATTTAATTTAAAATCATTTATAAGATTATAAAACCATTTAAAG
TGAGTAACTAAGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTT
TCGCTTCACGTTTCCCAATGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAATTT
TGATTTAAAATTATTTATAAGATTATAAAACCATTTAAAGCGAGCAACTAGGCTTTCGAAGGTAT
GAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTTGATGCAAAC
ATCAAATTATGATCT
Found at i:11990028 original size:67 final size:67
Alignment explanation
Indices: 11989917--11990052 Score: 191
Period size: 67 Copynumber: 2.0 Consensus size: 67
11989907 AAGCTTTGAC
* * * * * *
11989917 AATGGTTTTTCAATGGCTCAGCCATAACCTTTAACAATGATTTTTCACGGGATCAACCAAAACCC
1 AATGGCTTTTCAAAGGCTCAACAACAACCTTTAACAATGATTTTTCACGAGATCAACCAAAACCC
11989982 AA
66 AA
* * *
11989984 AATGGCTTTTCAAAGGCTCAACAACAACCTTTAACAATGGTTTTTCACTAGATCAACCGAAACCC
1 AATGGCTTTTCAAAGGCTCAACAACAACCTTTAACAATGATTTTTCACGAGATCAACCAAAACCC
11990049 AA
66 AA
11990051 AA
1 AA
11990053 CTAATTTTTC
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
67 60 1.00
ACGTcount: A:0.37, C:0.24, G:0.12, T:0.26
Consensus pattern (67 bp):
AATGGCTTTTCAAAGGCTCAACAACAACCTTTAACAATGATTTTTCACGAGATCAACCAAAACCC
AA
Found at i:11990029 original size:35 final size:34
Alignment explanation
Indices: 11989910--11990030 Score: 104
Period size: 35 Copynumber: 3.6 Consensus size: 34
11989900 ATCCACCAAG
* * * *
11989910 CTTTGACAATGGTTTTTCAATGGCTCAGCCATAAC
1 CTTTAACAATGGTTTTTCAAAGGCTCA-ACAAAAC
* ** *
11989945 CTTTAACAATGATTTTTCACGGGATCAACCAAAAC
1 CTTTAACAATGGTTTTTCAAAGGCTCAA-CAAAAC
* *
11989980 C--CAA-AATGGCTTTTCAAAGGCTCAACAACAAC
1 CTTTAACAATGGTTTTTCAAAGGCTCAACAA-AAC
11990012 CTTTAACAATGGTTTTTCA
1 CTTTAACAATGGTTTTTCA
11990031 CTAGATCAAC
Statistics
Matches: 66, Mismatches: 15, Indels: 10
0.73 0.16 0.11
Matches are distributed among these distances:
31 3 0.05
32 20 0.30
33 2 0.03
34 2 0.03
35 39 0.59
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.31
Consensus pattern (34 bp):
CTTTAACAATGGTTTTTCAAAGGCTCAACAAAAC
Found at i:11994509 original size:19 final size:19
Alignment explanation
Indices: 11994485--11994521 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
11994475 TCAAAAAAAA
* *
11994485 TAAAGCTTGACGCTAATTT
1 TAAAGCTAGACACTAATTT
11994504 TAAAGCTAGACACTAATT
1 TAAAGCTAGACACTAATT
11994522 GAGAAAACTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (19 bp):
TAAAGCTAGACACTAATTT
Found at i:12003264 original size:15 final size:15
Alignment explanation
Indices: 12003214--12003264 Score: 68
Period size: 15 Copynumber: 3.4 Consensus size: 15
12003204 TTTAAAGATC
*
12003214 AAAGATTTTGGTTTT
1 AAAGTTTTTGGTTTT
*
12003229 AAAG-CTTTGGATTTT
1 AAAGTTTTTGG-TTTT
12003244 AAAGTTTTTGGTTTT
1 AAAGTTTTTGGTTTT
12003259 AAAGTT
1 AAAGTT
12003265 GTTTTAAGAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
14 5 0.16
15 22 0.69
16 5 0.16
ACGTcount: A:0.27, C:0.02, G:0.20, T:0.51
Consensus pattern (15 bp):
AAAGTTTTTGGTTTT
Found at i:12011287 original size:43 final size:43
Alignment explanation
Indices: 12011234--12011352 Score: 148
Period size: 43 Copynumber: 2.8 Consensus size: 43
12011224 TCACCAGCTC
** * *
12011234 ATGCGCACTCCCTACTCGCACATGGCTGGGTCATCATCGGGTT
1 ATGCGCACTCCCTACTCGCACATAACCGGGTCATCATCGGCTT
* ** *
12011277 ATGCGTACTCCCTACTCATACATAACCGGGTCATCCTCGGCTT
1 ATGCGCACTCCCTACTCGCACATAACCGGGTCATCATCGGCTT
* *
12011320 ATGCGCACTCCCTACTCGCACATAGCCGAGTCA
1 ATGCGCACTCCCTACTCGCACATAACCGGGTCA
12011353 ATATAATTAC
Statistics
Matches: 63, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 63 1.00
ACGTcount: A:0.20, C:0.35, G:0.20, T:0.24
Consensus pattern (43 bp):
ATGCGCACTCCCTACTCGCACATAACCGGGTCATCATCGGCTT
Found at i:12015411 original size:26 final size:26
Alignment explanation
Indices: 12015351--12015412 Score: 106
Period size: 26 Copynumber: 2.4 Consensus size: 26
12015341 ACCATATACC
*
12015351 CATCATCAACATGCACACCATCCCAT
1 CATCATCATCATGCACACCATCCCAT
*
12015377 CATCATCATCATGCACATCATCCCAT
1 CATCATCATCATGCACACCATCCCAT
12015403 CATCATCATC
1 CATCATCATC
12015413 TCATATGCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.32, C:0.40, G:0.03, T:0.24
Consensus pattern (26 bp):
CATCATCATCATGCACACCATCCCAT
Found at i:12015705 original size:42 final size:42
Alignment explanation
Indices: 12015647--12015769 Score: 219
Period size: 42 Copynumber: 2.9 Consensus size: 42
12015637 ATGGGGGCAA
* *
12015647 CAACGGCTTATGTGCACTCCCACTCACACATAGCCGGGTCAG
1 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTCAG
*
12015689 CAACGGCTTATGTGCACTCCTACTCGCACATAGTCGGGTCAG
1 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTCAG
12015731 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGT
1 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGT
12015770 TCAAATCAAC
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 77 1.00
ACGTcount: A:0.22, C:0.33, G:0.23, T:0.22
Consensus pattern (42 bp):
CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTCAG
Found at i:12021852 original size:39 final size:40
Alignment explanation
Indices: 12021788--12021882 Score: 111
Period size: 42 Copynumber: 2.4 Consensus size: 40
12021778 CGAGATTCAA
* * * *
12021788 TCTCGCTGCAGCGAAATTTCTACCC-AGAAACAGAATGTT
1 TCTCGCTGCAGCGAAATTGCAACCCAAAAAACAGAAAGTT
* *
12021827 TCTCGCTGCAGGGACATTGCAACCCAAAAAAAACAGAAAGTT
1 TCTCGCTGCAGCGAAATTGCAACCC--AAAAAACAGAAAGTT
12021869 TCTCGCTGCAGCGA
1 TCTCGCTGCAGCGA
12021883 GAAGCTACAG
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
39 21 0.46
42 25 0.54
ACGTcount: A:0.33, C:0.26, G:0.20, T:0.21
Consensus pattern (40 bp):
TCTCGCTGCAGCGAAATTGCAACCCAAAAAACAGAAAGTT
Found at i:12022215 original size:90 final size:89
Alignment explanation
Indices: 12022061--12022240 Score: 351
Period size: 90 Copynumber: 2.0 Consensus size: 89
12022051 AACCAACATG
12022061 AAAACACATAACAATTTCTCAAGGTTTAACATGTCAAGTTTCACATGCATTACAACCATAACCCA
1 AAAACACATAACAATTTCTCAAGGTTTAACATGTCAAGTTTCACATGCATTACAACCATAACCCA
12022126 TTATCCATCAATTTCCTATAACAC
66 TTATCCATCAATTTCCTATAACAC
12022150 ANAAACACATAACAATTTCTCAAGGTTTAACATGTCAAGTTTCACATGCATTACAACCATAACCC
1 A-AAACACATAACAATTTCTCAAGGTTTAACATGTCAAGTTTCACATGCATTACAACCATAACCC
12022215 ATTATCCATCAATTTCCTATAACAC
65 ATTATCCATCAATTTCCTATAACAC
12022240 A
1 A
12022241 CATATTTATA
Statistics
Matches: 90, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
89 1 0.01
90 89 0.99
ACGTcount: A:0.39, C:0.26, G:0.06, T:0.29
Consensus pattern (89 bp):
AAAACACATAACAATTTCTCAAGGTTTAACATGTCAAGTTTCACATGCATTACAACCATAACCCA
TTATCCATCAATTTCCTATAACAC
Found at i:12022438 original size:43 final size:43
Alignment explanation
Indices: 12022307--12022438 Score: 149
Period size: 43 Copynumber: 3.1 Consensus size: 43
12022297 CCCATCATCA
* * * * *
12022307 TCATCACCAGCTCATGCGCACTCCCTACTTGCACATGGCTGGG
1 TCATCACCGGCTTATGCGCACTCCCTACTCGCACATAGCTGAG
* * * *
12022350 TCATCACCGGGTTATGCACACTCCCTACTCGCACATAACCGAG
1 TCATCACCGGCTTATGCGCACTCCCTACTCGCACATAGCTGAG
* *
12022393 TCATC-CTCGGCTTATGCGCACTCCTTACTCGCACATAGCTAAG
1 TCATCAC-CGGCTTATGCGCACTCCCTACTCGCACATAGCTGAG
12022436 TCA
1 TCA
12022439 ATATAATTAC
Statistics
Matches: 73, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
42 1 0.01
43 72 0.99
ACGTcount: A:0.22, C:0.36, G:0.17, T:0.24
Consensus pattern (43 bp):
TCATCACCGGCTTATGCGCACTCCCTACTCGCACATAGCTGAG
Found at i:12024017 original size:73 final size:74
Alignment explanation
Indices: 12023897--12024045 Score: 201
Period size: 73 Copynumber: 2.0 Consensus size: 74
12023887 ATGCTTAAAT
* * * *
12023897 TCAAATTTTCTGATAGTGTGCTCTTAGTTGACTAACCATGCTTCTTAGTCGATTAAGTCTTCTCT
1 TCAAATTTTCTGACAGTGAGCTCTTAGTTGACTAACCATACTTCTTAGTCGATTAAGTATTCTCT
*
12023962 GTCTCGCAA
66 ATCTCGCAA
* * * *
12023971 TCAAATTTT-TGACCGTGAGCTTTTAGTTGGCTAACCATACTTCTTAGTCGATTAAGTATTTTCT
1 TCAAATTTTCTGACAGTGAGCTCTTAGTTGACTAACCATACTTCTTAGTCGATTAAGTATTCTCT
*
12024035 ATCTTGCAA
66 ATCTCGCAA
12024044 TC
1 TC
12024046 TGCTTTACTC
Statistics
Matches: 65, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
73 56 0.86
74 9 0.14
ACGTcount: A:0.23, C:0.20, G:0.15, T:0.42
Consensus pattern (74 bp):
TCAAATTTTCTGACAGTGAGCTCTTAGTTGACTAACCATACTTCTTAGTCGATTAAGTATTCTCT
ATCTCGCAA
Found at i:12025617 original size:173 final size:171
Alignment explanation
Indices: 12025085--12025938 Score: 748
Period size: 172 Copynumber: 5.0 Consensus size: 171
12025075 AAAGCTAACA
* *** * * * *
12025085 TTTTCTTGTCAATGGATGGCTTTCAG-TTCATGTTTCCCGATGCAAATATCAAAGTCTGATTTGT
1 TTTTCTTGTCAATGGATGGCTTTC-GCTTCACGTTTCAAAATGCAAACAACAAATTATGATTTGT
* * *
12025149 TTTAACAAAAAATGAAAAAACAATTCAAGTT-AAAATCATTTATAAGATTATAAAACCATTTAAA
65 TTTAACTAAAAATGAAAAAAAAATTCAA-TTCAAAATCATTTATAAAATTATAAAACCATTTAAA
* * ** *
12025213 G-AGACTAAAAAGGC-TTCTAAAGGCATGAGTGACTATGGATGTAC
129 GCAG--TAATAAGGCTTTC-AAAGCCATGAGTGACTATAAATGGAC
** * * **
12025257 TTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCATTGCAAACAACAAAGTATGACATGTT
1 TTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCAAAATGCAAACAACAAATTATGATTTGTT
* * * * * * * *
12025322 CTAACTAAAGATGAAAAAAAAATTGAGTTCAAAATTATTTACAAAGTTATAAAACCTTTTAAAGT
66 TTAACTAAAAATGAAAAAAAAATTCAATTCAAAATCATTTATAAAATTATAAAACCATTTAAAG-
* * * * *
12025387 GAGTAACGAA-GCTTTCAAAACCATTAGTGTCTATAAATGGAC
130 CAGTAA-TAAGGCTTTCAAAGCCATGAGTGACTATAAATGGAC
* * * *
12025429 TTTTCTTGTCAATGGATGGCCTTCGCTTTACGTTTCAAAATGTAAACAAGAAATTATGATTTGTT
1 TTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCAAAATGCAAACAACAAATTATGATTTGTT
* * * *
12025494 TTAA-TAAAAAATGAAAAAAAAATCCAATTTAAAATCATTTATAAAAGTTATAAAACCACTTATA
66 TTAACT-AAAAATGAAAAAAAAATTCAATTCAAAATCATTTATAAAA-TTATAAAACCATTTAAA
* * *
12025558 GCATGTAATTAGGCTTTCGAAGCCAAGAGTGACTATAAATGGAC
129 GCA-GTAATAAGGCTTTCAAAGCCATGAGTGACTATAAATGGAC
* * * * * *
12025602 TGTTCTTGTCAATGGATGGCTTTCGCTTCACATTTCCAAATGCAAACAACATATTATGATCTATT
1 TTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCAAAATGCAAACAACAAATTATGATTTGTT
* * ** * **
12025667 TGAACTAAAAATG-AAAAAAAATTCAATACAAAATTGTTTATAAGATTAT-AAACCA-TTAACCC
66 TTAACTAAAAATGAAAAAAAAATTCAATTCAAAATCATTTATAAAATTATAAAACCATTTAAAGC
** * *
12025729 AAGTAATAAGGCTTTTGAAGGCATGAGTGACTATAGATGGAC
131 -AGTAATAAGGCTTTCAAAGCCATGAGTGACTATAAATGGAC
* * * * ** ** * *
12025771 TTCTCTTGTCAATGGATGGCTTTTGTTTCAAGTTTTC-TGATGCAAACATTAAATTGTGATCTGT
1 TTTTCTTGTCAATGGATGGCTTTCGCTTCACG-TTTCAAAATGCAAACAACAAATTATGATTTGT
* * * **
12025835 TTTAACCAAAAATG-AAAAACAATTCAACAT-AAAATCATTTATAAGTTTATAAAACCATTTAAA
65 TTTAACTAAAAATGAAAAAAAAATTCAA-TTCAAAATCATTTATAAAATTATAAAACCATTTAAA
* *
12025898 GCGAGTAACAAGGC-TTCTAAAG-CATG-GTGACTATNAATGGA
129 GC-AGTAATAAGGCTTTC-AAAGCCATGAGTGACTATAAATGGA
12025939 TGGCTTTTGT
Statistics
Matches: 553, Mismatches: 112, Indels: 37
0.79 0.16 0.05
Matches are distributed among these distances:
169 139 0.25
170 23 0.04
171 26 0.05
172 246 0.44
173 116 0.21
174 3 0.01
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.33
Consensus pattern (171 bp):
TTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCAAAATGCAAACAACAAATTATGATTTGTT
TTAACTAAAAATGAAAAAAAAATTCAATTCAAAATCATTTATAAAATTATAAAACCATTTAAAGC
AGTAATAAGGCTTTCAAAGCCATGAGTGACTATAAATGGAC
Found at i:12025816 original size:169 final size:169
Alignment explanation
Indices: 12025085--12028062 Score: 1439
Period size: 171 Copynumber: 17.7 Consensus size: 169
12025075 AAAGCTAACA
* * ** * * * * *
12025085 TTTTCTTGTCAATGGATGGCTTTCAG-TTCATGTTTCCCGATGCAAATATCAAAGTCTGATTTGT
1 TTTTCTTGTCAATGGATGGCTTTC-GCTTCAAGTTTTCAAATGCAAACAACAAATTATGATCTGT
*
12025149 TTTAACAAAAAATGAAAAAACAATTCAAGT-TAAAATCATTTATAAGATTATAAAACCATTTAAA
65 TTTAACTAAAAATGAAAAAA-AATTCAA-TATAAAATCATTTATAAGATTATAAAACCA-TT-AA
* * * ** *
12025213 G-AGACTAAAAAGGC-TTCTAAAGGCATGAGTGACTATGGATGTAC
126 GCA-AGTAATAAGGCTTTC-AAAGCCATGAGTGACTATAAATGGAC
* * *
12025257 TTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-ATTGCAAACAACAAAGTATGA-CATG
1 TTTTCTTGTCAATGGATGGCTTTCGCTTCAAGTTT-TCAAATGCAAACAACAAATTATGATC-TG
* * * * * * *
12025320 TTCTAACTAAAGATGAAAAAAAAATTGAGT-TCAAAATTATTTACAA-AGTTATAAAACCTTTTA
64 TTTTAACTAAAAATG-AAAAAAAATTCAATAT-AAAATCATTTATAAGA-TTATAAAACC-ATT-
** * * * *
12025383 AAGTGAGTAACGAA-GCTTTCAAAACCATTAGTGTCTATAAATGGAC
124 AAGCAAGTAA-TAAGGCTTTCAAAGCCATGAGTGACTATAAATGGAC
* * * * * *
12025429 TTTTCTTGTCAATGGATGGCCTTCGCTTTACG-TTTCAAAATGTAAACAAGAAATTATGATTTGT
1 TTTTCTTGTCAATGGATGGCTTTCGCTTCAAGTTTTC-AAATGCAAACAACAAATTATGATCTGT
* * *
12025493 TTTAA-TAAAAAATGAAAAAAAAATCCAATTTAAAATCATTTATAAAAGTTATAAAACCACTTAT
65 TTTAACT-AAAAATG-AAAAAAAATTCAATATAAAATCATTTATAAGA-TTATAAAACCA-TTA-
* * * *
12025557 AGCATGTAATTAGGCTTTCGAAGCCAAGAGTGACTATAAATGGAC
125 AGCAAGTAATAAGGCTTTCAAAGCCATGAGTGACTATAAATGGAC
* * * *
12025602 TGTTCTTGTCAATGGATGGCTTTCGCTTCACA-TTTCCAAATGCAAACAACATATTATGATCTAT
1 TTTTCTTGTCAATGGATGGCTTTCGCTTCA-AGTTTTCAAATGCAAACAACAAATTATGATCTGT
* * ** *
12025666 TTGAACTAAAAATGAAAAAAAATTCAATACAAAATTGTTTATAAGATTAT-AAACCATTAACCCA
65 TTTAACTAAAAATGAAAAAAAATTCAATATAAAATCATTTATAAGATTATAAAACCATTAA-GCA
** * *
12025730 AGTAATAAGGCTTTTGAAGGCATGAGTGACTATAGATGGAC
129 AGTAATAAGGCTTTCAAAGCCATGAGTGACTATAAATGGAC
* * * ** ** *
12025771 TTCTCTTGTCAATGGATGGCTTTTGTTTCAAGTTTTCTGATGCAAACATTAAATTGTGATCTGTT
1 TTTTCTTGTCAATGGATGGCTTTCGCTTCAAGTTTTCAAATGCAAACAACAAATTATGATCTGTT
* * * * *
12025836 TTAACCAAAAATGAAAAACAATTCAACATAAAATCATTTATAAGTTTATAAAACCATTTAAAGCG
66 TTAACTAAAAATGAAAAAAAATTCAATATAAAATCATTTATAAGATTATAAAACCA-TT-AAGCA
* *
12025901 AGTAACAAGGC-TTCTAAAG-CATG-GTGACTATNAATGGATGGC
129 AGTAATAAGGCTTTC-AAAGCCATGAGTGACTATAAATGGA---C
* * * ** * *
12025943 TTTTGTT-TCAA--G-T---TTT--C-T---G-ATGCAAA--C--ATTA-AATT-GTGATCTGTT
1 TTTTCTTGTCAATGGATGGCTTTCGCTTCAAGTTTTCAAATGCAAACAACAAATTATGATCTGTT
* * * * *
12025988 TTAACCAAAAATGAAAAACAATTCAACATAAAATCATTTATAAGTTTATAAAACCATTTAAAGCG
66 TTAACTAAAAATGAAAAAAAATTCAATATAAAATCATTTATAAGATTATAAAACCA-TT-AAGCA
*
12026053 AGTAACAAGGCTTTCAAAAG-CATG-GTGACTATAAATGGAC
129 AGTAATAAGGCTTTC-AAAGCCATGAGTGACTATAAATGGAC
* * * * *
12026093 TTTTCTTGTCAATTGATGGCTTTCGCTTCACGTTTTGC-AATGCAAATATCAAATT-TGTATATG
1 TTTTCTTGTCAATGGATGGCTTTCGCTTCAAGTTTT-CAAATGCAAACAACAAATTATG-ATCTG
* * **
12026156 TTTTAGC-AAAAATGAAGAGGAATTCAACT-TAAAATCATTTATAAGATTATAAAACCATTTAAA
64 TTTTAACTAAAAATGAAAAAAAATTCAA-TATAAAATCATTTATAAGATTATAAAACCA-TT-AA
* * * * * *
12026219 GCAAGTAACAAGCCTTTCGAAGGCATGATTGCCTA-AAGATGGAC
126 GCAAGTAATAAGGCTTTCAAAGCCATGAGTGACTATAA-ATGGAC
* *** * * ** *
12026263 TTTT-TTGTCAATTGATTTTTTTCGCTTCACGTTTCTC-ATTGCACGCAACAAATTATGATATGT
1 TTTTCTTGTCAATGGATGGCTTTCGCTTCAAGTTT-TCAAATGCAAACAACAAATTATGATCTGT
* * * *
12026326 TATAACCAAAAATG--AAAAAATCCAAT-TCACAATCATTTATAA-AGTTATAAAACCACTTAAA
65 TTTAACTAAAAATGAAAAAAAATTCAATAT-AAAATCATTTATAAGA-TTATAAAACCA-TT-AA
* ** * *
12026387 GCGAGTAGCAAGGCTTTCAAAGGCATTAGTGACTATAAATGGAC
126 GCAAGTAATAAGGCTTTCAAAGCCATGAGTGACTATAAATGGAC
* * * * * * * * *
12026431 TTTTCTTGTCAATGGATTGCTTTCACGTCATG-TTTCGCAAGGTAAAAAATAAATTATGATCTGT
1 TTTTCTTGTCAATGGATGGCTTTCGCTTCAAGTTTTC-AAATGCAAACAACAAATTATGATCTGT
* * * *
12026495 TTCAAC-AAATAATGAAAAAATATACAATTTAAAATCATTTATAAGATTATAAAACCATTTAAAG
65 TTTAACTAAA-AATGAAAAAAAATTCAATATAAAATCATTTATAAGATTATAAAACCA-TT-AAG
* * * * * * *
12026559 CAAATAACT-AGGTTTTTAAAGGCATGCGTGATTGTAAATGGAC
127 CAAGTAA-TAAGGCTTTCAAAGCCATGAGTGACTATAAATGGAC
* * ** * * * ** *
12026602 TTTT-TTGGTCAATGGGTGGCTTTTGCTTCACCTTTCCCAATGCAAACATCAAATTACAATATGT
1 TTTTCTT-GTCAATGGATGGCTTTCGCTTCAAGTTTTCAAATGCAAACAACAAATTATGATCTGT
* * * * * *
12026666 TTTACCCAAAAATGGAAAACAATTCAATATAAAATCATTTATAA-AGTTATAAAACTACTTAAAT
65 TTTAACTAAAAATGAAAAAAAATTCAATATAAAATCATTTATAAGA-TTATAAAACCA-TT-AAG
** * * * * * * *
12026730 TGAGTAA-ACAGACTTTCGAAGGCGTAAGTGACTATATATAGAC
127 CAAGTAATA-AGGCTTTCAAAGCCATGAGTGACTATAAATGGAC
* * * ** * * * *
12026773 TTTTCTTGTCAATGGATGGCTTTCGATTCACGTTTCCTGATGCAAATATCAAAGTATGATATGTT
1 TTTTCTTGTCAATGGATGGCTTTCGCTTCAAGTTTTCAAATGCAAACAACAAATTATGATCTGTT
** * * * *
12026838 GGAACCAAAAATGAAAAATCAATTGAAGT-TAAAATCATTTATAAGATTAT-AAACCATTTAAAA
66 TTAACTAAAAATGAAAAA-AAATTCAA-TATAAAATCATTTATAAGATTATAAAACCA-TT-AAG
* * * * * * * *
12026901 CGACTAAAAAGGC-TTCGAACGACATGGGTGACTATATATGAAC
127 CAAGTAATAAGGCTTTC-AAAGCCATGAGTGACTATAAATGGAC
** * * * * * * *
12026944 TTTTCTTACCAGTGGATAGCTTTCGCTTCACA-TTTCCTACTGCAAACAACAAACTATGATAC-A
1 TTTTCTTGTCAATGGATGGCTTTCGCTTCA-AGTTTTCAAATGCAAACAACAAATTATGAT-CTG
* *
12027007 TTTTAACCAAAAATGAAAAACAAATTCAAT-TCAAAATTATTTATAA-AGTTATAAAACCACTTA
64 TTTTAACTAAAAATGAAAAA-AAATTCAATAT-AAAATCATTTATAAGA-TTATAAAACCA-TTA
* * * * *
12027070 A-AATGAGTAACAAGGCTTTCAAAAG-TATTAGTGTCTATAAATGGAC
125 AGCA--AGTAATAAGGCTTTC-AAAGCCATGAGTGACTATAAATGGAC
* * * * * * * * *
12027116 TTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCCAATGTAAACTAGAAATTAAGATATGTT
1 TTTTCTTGTCAATGGATGGCTTTCGCTTCAAGTTTTCAAATGCAAACAACAAATTATGATCTGTT
*
12027181 TTAA-TAAAAAATGAAAAAAAA--CAATTTAAAATCATTTATAA-AGTTATAAAACCACTTAAAG
66 TTAACT-AAAAATGAAAAAAAATTCAATATAAAATCATTTATAAGA-TTATAAAACCA-TT-AAG
* * * **
12027242 CAAGTAACT-AGGCTTTCGAAGGCATGAGT--CAATGGATGG-C
127 CAAGTAA-TAAGGCTTTCAAAGCCATGAGTGACTATAAATGGAC
* * ** * ** * * ** * *
12027282 TTTGGC-T-TC-AT-GTTTCCTAAT-GCAAACAACAGATTATGATTTGTTTGAACCAA-AAA-TA
1 TTT-TCTTGTCAATGGATGGCT-TTCGC-TTC-A-AG-TTTTCAAATG---CAAACAACAAATTA
* * * * * * * * ** **
12027340 --A--AG----AA--AAAATTCAATACAAAATT--ATTTATAA-GA-TTATAAAACCATTTAA--
57 TGATCTGTTTTAACTAAAAATGAA-AAAAAATTCAATATAAAATCATTTATAAGATTATAAAACC
* *** * *
12027389 AGT--G--AGTAATAAGGCTTTTGTAGGCATGAGTGACTATAAATGAAC
121 ATTAAGCAAGTAATAAGGCTTTCAAAGCCATGAGTGACTATAAATGGAC
* * * * *
12027434 TTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTCTC-AATGCAAACATCAAATTGTGATTTGT
1 TTTTCTTGTCAATGGATGGCTTTCGCTTCAAGTTT-TCAAATGCAAACAACAAATTATGATCTGT
* * * * *
12027498 TTTAACCAAAAAATGAAAAACAATTTAACATAAAATCATTTATAA-ATTTATAAAATCATTTAAA
65 TTTAA-CTAAAAATGAAAAAAAATTCAATATAAAATCATTTATAAGA-TTATAAAACCA-TT-AA
* * * ** * *
12027562 GCGAGTAACAAAGCTTTTGAAGGCATG-GTGACTATAAATCGAC
126 GCAAGTAATAAGGCTTTCAAAGCCATGAGTGACTATAAATGGAC
* * * * * * * *
12027605 TTTTCTTCTCAATGGATGGCTTTTGCTTCACGTTTTCCATTGCAAACAAAAAATTTTGATATGTT
1 TTTTCTTGTCAATGGATGGCTTTCGCTTCAAGTTTTCAAATGCAAACAACAAATTATGATCTGTT
*
12027670 TTAA-TCAAAAATGAAAAAAAAATTTCAAT-TCAAATCATTTATAA-AGTTATAAAACCACTTAA
66 TTAACT-AAAAATG-AAAAAAAA-TTCAATATAAAATCATTTATAAGA-TTATAAAACCA-TT-A
* ** ** * *
12027732 AGCTAGTAACGAGGCTTTTGAAGGCATTAGT-AGCTATAAATGGAC
125 AGCAAGTAATAAGGCTTTCAAAGCCATGAGTGA-CTATAAATGGAC
* * * * * * *
12027777 TTTTCTTATAAATGAATGGCTTTTGCTTCATGTTTCTC-ATTGCAAACAACAAATTATGATATGT
1 TTTTCTTGTCAATGGATGGCTTTCGCTTCAAGTTT-TCAAATGCAAACAACAAATTATGATCTGT
* * *
12027841 TTTAA-TCAAAAATGAAAAAAAAAACTCAACATAAAATCATTTAGAA-AGTTATAAAACCACTTA
65 TTTAACT-AAAAATG--AAAAAAAATTCAATATAAAATCATTTATAAGA-TTATAAAACCA-TTA
* * * * ** * * *
12027904 A-AATGAGTAACAACGCTTTCGAAGGTATAAATGACTATAAATAGAC
125 AGCA--AGTAATAAGGCTTTCAAAGCCATGAGTGACTATAAATGGAC
* * * *
12027950 TTTTCTTGTTAATGGATGGCTTTCACTTCACA-TTTCTC-AATACAAACAATAAATTATGATCTG
1 TTTTCTTGTCAATGGATGGCTTTCGCTTCA-AGTTT-TCAAATGCAAACAACAAATTATGATCTG
* * *
12028013 TGTTGAACAAAAAATGAAAAAAAAATCAACT-TAAAATCATTTATAAGATT
64 T-TTTAACTAAAAATGAAAAAAAATTCAA-TATAAAATCATTTATAAGATT
12028063 GGAAAACAAT
Statistics
Matches: 2202, Mismatches: 437, Indels: 334
0.74 0.15 0.11
Matches are distributed among these distances:
148 5 0.00
149 26 0.01
150 8 0.00
151 16 0.01
152 94 0.04
153 32 0.01
154 8 0.00
155 6 0.00
156 1 0.00
157 13 0.01
158 14 0.01
159 14 0.01
160 9 0.00
161 7 0.00
162 6 0.00
163 9 0.00
164 18 0.01
165 7 0.00
166 9 0.00
167 18 0.01
168 92 0.04
169 376 0.17
170 81 0.04
171 549 0.25
172 514 0.23
173 254 0.12
174 16 0.01
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (169 bp):
TTTTCTTGTCAATGGATGGCTTTCGCTTCAAGTTTTCAAATGCAAACAACAAATTATGATCTGTT
TTAACTAAAAATGAAAAAAAATTCAATATAAAATCATTTATAAGATTATAAAACCATTAAGCAAG
TAATAAGGCTTTCAAAGCCATGAGTGACTATAAATGGAC
Found at i:12026057 original size:152 final size:153
Alignment explanation
Indices: 12025781--12026091 Score: 597
Period size: 152 Copynumber: 2.0 Consensus size: 153
12025771 TTCTCTTGTC
12025781 AATGGATGGCTTTTGTTTCAAGTTTTCTGATGCAAACATTAAATTGTGATCTGTTTTAACCAAAA
1 AATGGATGGCTTTTGTTTCAAGTTTTCTGATGCAAACATTAAATTGTGATCTGTTTTAACCAAAA
12025846 ATGAAAAACAATTCAACATAAAATCATTTATAAGTTTATAAAACCATTTAAAGCGAGTAACAAGG
66 ATGAAAAACAATTCAACATAAAATCATTTATAAGTTTATAAAACCATTTAAAGCGAGTAACAAGG
* *
12025911 C-TTCTAAAGCATGGTGACTATN
131 CTTTCAAAAGCATGGTGACTATA
12025933 AATGGATGGCTTTTGTTTCAAGTTTTCTGATGCAAACATTAAATTGTGATCTGTTTTAACCAAAA
1 AATGGATGGCTTTTGTTTCAAGTTTTCTGATGCAAACATTAAATTGTGATCTGTTTTAACCAAAA
12025998 ATGAAAAACAATTCAACATAAAATCATTTATAAGTTTATAAAACCATTTAAAGCGAGTAACAAGG
66 ATGAAAAACAATTCAACATAAAATCATTTATAAGTTTATAAAACCATTTAAAGCGAGTAACAAGG
12026063 CTTTCAAAAGCATGGTGACTATA
131 CTTTCAAAAGCATGGTGACTATA
12026086 AATGGA
1 AATGGA
12026092 CTTTTCTTGT
Statistics
Matches: 156, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
152 131 0.84
153 25 0.16
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.32
Consensus pattern (153 bp):
AATGGATGGCTTTTGTTTCAAGTTTTCTGATGCAAACATTAAATTGTGATCTGTTTTAACCAAAA
ATGAAAAACAATTCAACATAAAATCATTTATAAGTTTATAAAACCATTTAAAGCGAGTAACAAGG
CTTTCAAAAGCATGGTGACTATA
Found at i:12026853 original size:342 final size:338
Alignment explanation
Indices: 12025962--12029875 Score: 1923
Period size: 343 Copynumber: 11.6 Consensus size: 338
12025952 AAGTTTTCTG
** * * *
12025962 ATGCAAACATTAAATTGTGATCTGTTTTAACCAAAAATGAAAAACAATTCAACAT-AAAATCATT
1 ATGCAAACAACAAATTATGATATGTTTTAACCAAAAATGAAAAACAATTCAA-TTCAAAATCATT
* *
12026026 TAT-AAGTTTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCAAAAGCA-TGGTGACTATAAAT
65 TATAAAG-TTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCAAAAGCATTAGTGACTATAAAT
* * *
12026089 GGACTTTTCTTGTCAATTGATGGCTTTCGCTTCACGTTTTGC-AATGCAAATATCAAATT-TGTA
129 GGACTTTTCTTGTCAATGGATGGCTTTCGATTCACG-TTTCCTAATGCAAATATCAAATTATG-A
* * *
12026152 TATGTTTTAGCAAAAATGAAGAGGAAT-T-CAACTTAAAATCATTTATAAGATTATAAAACCATT
192 TATGTTTTAACAAAAATGAA-A-AAATATACAATTTAAAATCATTTATAAGATTATAAAACCATT
* * * * * * *
12026215 TAAAGCAAGTAACAAGCCTTTCGAAGGCATGATTGCCTAAAGATGGACTTTTTTGTCAATTGATT
255 TAAAGCAAGTAACAAGGCTTTCAAAGGCATGAGTGACTTAA-ATGGACTTTTTTGTCAATGGATG
* * *
12026280 TTTTTCGCTTCACGTTTCTCA
319 CTTTT-GCTTCACATTTCCCA
* ** * * *
12026301 TTGCACGCAACAAATTATGATATGTTATAACCAAAAATG-AAAA-AATCCAATTCACAATCATTT
1 ATGCAAACAACAAATTATGATATGTTTTAACCAAAAATGAAAAACAATTCAATTCAAAATCATTT
* *
12026364 ATAAAGTTATAAAACCACTTAAAGCGAGTAGCAAGGCTTTCAAAGGCATTAGTGACTATAAATGG
66 ATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCAAAAGCATTAGTGACTATAAATGG
* * * * * *
12026429 ACTTTTCTTGTCAATGGATTGCTTTC-ACGTCATGTTTCGC-AAGGTAAAAAAT-AAATTATGAT
131 ACTTTTCTTGTCAATGGATGGCTTTCGA-TTCACGTTTC-CTAATG-CAAATATCAAATTATGAT
* *
12026491 CTGTTTCAACAAATAATGAAAAAATATACAATTTAAAATCATTTATAAGATTATAAAACCATTTA
193 ATGTTTTAACAAA-AATGAAAAAATATACAATTTAAAATCATTTATAAGATTATAAAACCATTTA
* * * * * * *
12026556 AAGCAAATAACTAGGTTTTTAAAGGCATGCGTGATTGTAAATGGACTTTTTTGGTCAATGGGTGG
257 AAGCAAGTAACAAGGCTTTCAAAGGCATGAGTGACT-TAAATGGACTTTTTT-GTCAATGGAT-G
*
12026621 CTTTTGCTTCACCTTTCCCA
319 CTTTTGCTTCACATTTCCCA
* ** * *
12026641 ATGCAAACATCAAATTACAATATGTTTTACCCAAAAATGGAAAACAATTCAATAT-AAAATCATT
1 ATGCAAACAACAAATTATGATATGTTTTAACCAAAAATGAAAAACAATTCAAT-TCAAAATCATT
* ** * * * * * *
12026705 TATAAAGTTATAAAACTACTTAAATTGAGTAA-ACAGACTTTCGAAGGCGTAAGTGACTATATAT
65 TATAAAGTTATAAAACCACTTAAAGCGAGTAACA-AGGCTTTCAAAAGCATTAGTGACTATAAAT
* * *
12026769 AGACTTTTCTTGTCAATGGATGGCTTTCGATTCACGTTTCCTGATGCAAATATCAAAGTATGATA
129 GGACTTTTCTTGTCAATGGATGGCTTTCGATTCACGTTTCCTAATGCAAATATCAAATTATGATA
** ** *
12026834 TGTTGGAACCAAAAATG-AAAAATCAATTGAAGTTAAAATCATTTATAAGATTAT-AAACCATTT
194 TGTTTTAA-CAAAAATGAAAAAAT--ATACAATTTAAAATCATTTATAAGATTATAAAACCATTT
* * * * * * * * * ** *
12026897 AAAACGACTAAAAAGGC-TTCGAACGACATGGGTGACTATATATGAACTTTTCTTACCAGTGGAT
256 AAAGCAAGTAACAAGGCTTTC-AAAGGCATGAGTGACT-TAAATGGACTTTT-TTGTCAATGGAT
* *
12026961 AGCTTTCGCTTCACATTTCCTA
318 -GCTTTTGCTTCACATTTCCCA
* * ** *
12026983 CTGCAAACAACAAACTATGATACATTTTAACCAAAAATGAAAAACAAATTCAATTCAAAATTATT
1 ATGCAAACAACAAATTATGATATGTTTTAACCAAAAATGAAAAAC-AATTCAATTCAAAATCATT
** * *
12027048 TATAAAGTTATAAAACCACTTAAAATGAGTAACAAGGCTTTCAAAAGTATTAGTGTCTATAAATG
65 TATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCAAAAGCATTAGTGACTATAAATG
* * * * * *
12027113 GACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCCAATGTAAACTA-GAAATTAAGATA
130 GACTTTTCTTGTCAATGGATGGCTTTCGATTCACGTTTCCTAATGCAAA-TATCAAATTATGATA
* *
12027177 TGTTTTAATAAAAAATGAAAAAA-A-ACAATTTAAAATCATTTATAA-AGTTATAAAACCACTTA
194 TGTTTTAA-CAAAAATGAAAAAATATACAATTTAAAATCATTTATAAGA-TTATAAAACCATTTA
* *
12027239 AAGCAAGTAACTAGGCTTTCGAAGGCATGAGT--C---AAT-G--------G---AT-G--GCTT
257 AAGCAAGTAACAAGGCTTTCAAAGGCATGAGTGACTTAAATGGACTTTTTTGTCAATGGATGCTT
* ** *
12027284 TGGCTTCATGTTTCCTA
322 TTGCTTCACATTTCCCA
* * * * * * *
12027301 ATGCAAACAACAGATTATGATTTGTTTGAACCAAAAATAAAGAAAAAATTCAATACAAAATTATT
1 ATGCAAACAACAAATTATGATATGTTTTAACCAAAAATGAA-AAACAATTCAATTCAAAATCATT
* * * *** * *
12027366 TAT-AAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGTAGGCATGAGTGACTATAAAT
65 TATAAAG-TTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCAAAAGCATTAGTGACTATAAAT
* * *
12027430 GAACTTTTCTTGTCAATGGATGGCTTTC-ACTTCACGTTT-CTCAATGCAAACATCAAATTGTGA
129 GGACTTTTCTTGTCAATGGATGGCTTTCGA-TTCACGTTTCCT-AATGCAAATATCAAATTATGA
* ** ** *
12027493 TTTGTTTTAACCAAAAAATGAAAAACA-ATTTAACATAAAATCATTTATAA-ATTTATAAAATCA
192 TATGTTTTAA-C-AAAAATGAAAAA-ATATACAATTTAAAATCATTTATAAGA-TTATAAAACCA
* * ** * *
12027556 TTTAAAGCGAGTAACAAAGCTTTTGAAGGCATG-GTGACTATAAATCGACTTTTCTTCTCAATGG
253 TTTAAAGCAAGTAACAAGGCTTTCAAAGGCATGAGTGACT-TAAATGGACTTTT-TTGTCAATGG
* *
12027620 ATGGCTTTTGCTTCACGTTTTCCA
316 AT-GCTTTTGCTTCACATTTCCCA
* * * * *
12027644 TTGCAAACAAAAAATTTTGATATGTTTTAATCAAAAATGAAAAAAAAATTTCAATTC-AAATCAT
1 ATGCAAACAACAAATTATGATATGTTTTAACCAAAAATG-AAAAACAA-TTCAATTCAAAATCAT
* * ** *
12027708 TTATAAAGTTATAAAACCACTTAAAGCTAGTAACGAGGCTTTTGAAGGCATTAGT-AGCTATAAA
64 TTATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCAAAAGCATTAGTGA-CTATAAA
* * * * * * * * *
12027772 TGGACTTTTCTTATAAATGAATGGCTTTTGCTTCATGTTT-CTCATTGCAAACAACAAATTATGA
128 TGGACTTTTCTTGTCAATGGATGGCTTTCGATTCACGTTTCCT-AATGCAAATATCAAATTATGA
* * ** *
12027836 TATGTTTTAATCAAAAATGAAAAAAAAAACTCAACATAAAATCATTTAGAA-AGTTATAAAACCA
192 TATGTTTTAA-CAAAAATGAAAAAATATA--CAATTTAAAATCATTTATAAGA-TTATAAAACCA
* *** * * * * * * *
12027900 CTTAAAATGAGTAACAACGCTTTCGAAGGTATAAATGACTATAAATAGACTTTTCTTGTTAATGG
253 TTTAAAGCAAGTAACAAGGCTTTCAAAGGCATGAGTGACT-TAAATGGACTTTT-TTGTCAATGG
** *
12027965 ATGGCTTTCACTTCACATTTCTCA
316 AT-GCTTTTGCTTCACATTTCCCA
* * * * * * *
12027989 ATACAAACAATAAATTATGATCTGTGTTGAACAAAAAATGAAAAAAAAATCAACTT-AAAATCAT
1 ATGCAAACAACAAATTATGATATGT-TTTAACCAAAAATGAAAAACAATTCAA-TTCAAAATCAT
** * * * * * * * * * *
12028053 TTAT-AAGATTGGAAAACAATTTAAAGC-AATAA-ACGGAACATCTCGAAA-TAATACCTGGGGC
64 TTATAAAG-TTATAAAACCACTTAAAGCGAGTAACAAGG--C-TTTCAAAAGCATTA---GTGAC
* ** * ** ** * * ** * * *
12028114 GA-AAGATTCAATTAACCGAGATTCAGA-AGCTGAAATTTC-A-CCCCG--ACC--AT-C-AATA
122 TATAA-ATGGACTT-TTCTTG--TCA-ATGGATG-GCTTTCGATTCACGTTTCCTAATGCAAATA
* * *** * ** * ** *** ** * * ** ** *
12028169 GGCTTAGCCAGGGCAT-TTATAACACGACCCAAAAAAGCCT-C-A-CT--CATC-GGTATCTGAG
181 -TC-AAATTATGATATGTTTTAACAAAAATGAAAAAA-TATACAATTTAAAATCATTTATAAGAT
** * * * * * * *
12028227 TA-ACAAGGCTTTTAAAG---GT-ATAAGTGACTAT-AAATGG-ACG-TTTATTGTAAATGGA--
243 TATA-AAACCATTTAAAGCAAGTAACAAG-G-CTTTCAAA-GGCATGAGTGACT-TAAATGGACT
* **
12028282 ----------T-G--GCTTTCGCTTCATGTTTCCCA
303 TTTTTGTCAATGGATGCTTTTGCTTCACATTTCCCA
* * * * * *
12028305 ATACAAACAACAAATTATGATCAAT-TTTGAACCAAAAATGAAAAAAAATTTCATTTTAAACTCA
1 ATGCAAACAACAAATTATGAT--ATGTTTTAACCAAAAATGAAAAACAA-TTCAATTCAAAATCA
* * * * * *
12028369 TTTAT-AAGATTATAAAACCATTTAAATCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATCA
63 TTTATAAAG-TTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCAAAAGCATTAGTGACTATAA
** * ** *
12028433 AT-GA-TTGGCTT-TC-----A---C---C---TCATGTTTTTTGATGCGAACA-AT-AAATTAT
127 ATGGACTTTTCTTGTCAATGGATGGCTTTCGATTCACGTTTCCTAATGC-AA-ATATCAAATTAT
* * * * * *
12028479 GATTTGTTTCAACCAAAAATGAAAAAAAAATTCAATTTAAAATCATTTATAAGAATATAAAACTA
190 GATATGTTTTAA-CAAAAATG-AAAAAATATACAATTTAAAATCATTTATAAGATTATAAAACCA
* ** * *
12028544 TTTAAAGCAAGTAACAAAGCTTTTGAAGGCATTAGTGACTATAAATGGACTTTTTTTGTCAATCG
253 TTTAAAGCAAGTAACAAGGCTTTCAAAGGCATGAGTGACT-TAAATGGAC-TTTTTTGTCAATGG
**
12028609 ATGGCTTTTGCTTCATGTTTCCCA
316 AT-GCTTTTGCTTCACATTTCCCA
* * * * *
12028633 AGGCAAACAACAAATTATGATTTTTTTTAA-CAAATAATAAAAAACATATTC-ATCTTAAAATCA
1 ATGCAAACAACAAATTATGATATGTTTTAACCAAA-AATGAAAAACA-ATTCAAT-TCAAAATCA
* * * * * * * *
12028696 TTTGT-AAGACTATAAAACCATTTAAAGCGAATAACTAGGCTTTCAAAGGCATGAGTAACCT-TA
63 TTTATAAAG-TTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCAAAAGCATTAGTGA-CTATA
* * * * *
12028759 AATGGACTTTTCTAT-TCAATGGGTGGCTTTTGCTTCACATTTTCC-AATGCAAACATCAAATTA
126 AATGGACTTTTCT-TGTCAATGGATGGCTTTCGATTCAC-GTTTCCTAATGCAAATATCAAATTA
** ** * * * *
12028822 CAACCTGTTTTAACTAGAAATGGAAAACAAT-T-CAATTTAAAGTCATTTGTAAGGTTATAAAAC
189 TGATATGTTTTAAC-AAAAAT-GAAAA-AATATACAATTTAAAATCATTTATAAGATTATAAAAC
* * * * * * *
12028885 CACTTAAAGCGAGTAAAAAGGCTTTCAAAGGCATGAGTGACAATAAATGGACTGCTCTTGTCAGT
251 CATTTAAAGCAAGTAACAAGGCTTTCAAAGGCATGAGTGAC-TTAAATGGACT-TTTTTGTCAAT
* ** *
12028950 GGATGGCTTTCGCTTTGCATCTCCCA
314 GGAT-GCTTTTGCTTCACATTTCCCA
* * * * *
12028976 ATGCAAACAACAAATTATGATATGTTTAAACCAAAAATGAAAAAAAAAATTCAATACAAAGTGAT
1 ATGCAAACAACAAATTATGATATGTTTTAACCAAAAATG--AAAAACAATTCAATTCAAAATCAT
* * * * * * *
12029041 TTAT-AAGATTATAATACCATTTAAAGCTAGTTAA-AAGGCTATCAAAGGCATGAGTGAATATAA
64 TTATAAAG-TTATAAAACCACTTAAAGCGAG-TAACAAGGCTTTCAAAAGCATTAGTGACTATAA
* * * * * * * *
12029104 ATGGAATTTGCTTGTCAATGGATGGTTTTCGCTTCATGTTTCCCAAGGTAAATAAT-AAATTATG
127 ATGGACTTTTCTTGTCAATGGATGGCTTTCGATTCACGTTTCCTAATGCAAAT-ATCAAATTATG
* * * * *** * * *
12029168 ATTTGTTTTAATTAATAATG-AAAAATTTTTTACTGAAAATCATTTATAAGACTATAAAACCATT
191 ATATGTTTTAA-CAAAAATGAAAAAATATACAATTTAAAATCATTTATAAGATTATAAAACCATT
* ** *
12029232 TAAAGTGAA-TAATTAGGCTTT-AGAAGGTATGAGTGACTATAAATGGACTTTTTTGGTCAATGG
255 TAAAG-CAAGTAACAAGGCTTTCA-AAGGCATGAGTGACT-TAAATGGACTTTTTT-GTCAATGG
* ** *
12029295 GTGGCTTTCACTTCACATTTCCTA
316 AT-GCTTTTGCTTCACATTTCCCA
** ** * * * *
12029319 ATGCAAACATTAAATTACAATCTGTTTTAACCAAAACT-AGAAAACTATTCAATTTAAAATCATT
1 ATGCAAACAACAAATTATGATATGTTTTAACCAAAAATGA-AAAACAATTCAATTCAAAATCATT
* * ** * ** ** * *
12029383 TATAAAGTTATAGAACCACCTAAAATGAGTAAAAAGTTTTTTGAAAGCATAAGTG-CTTGTAAAT
65 TATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCAAAAGCATTAGTGAC-TATAAAT
* * * * * * * *
12029447 GGACTTTTCTTGTCCATTGATGG-TTGTTGCTTCACGTTTCCCATTGCAAACAACAAATTATGAT
129 GGACTTTTCTTGTCAATGGATGGCTT-TCGATTCACGTTTCCTAATGCAAATATCAAATTATGAT
* * * *
12029511 ATGTTTTAACTAAAAAT-AAAGAACA-ATTCAATTCAAAATTATTTATAA-AGTTATAAAACCAC
193 ATGTTTTAAC-AAAAATGAAA-AA-ATATACAATTTAAAATCATTTATAAGA-TTATAAAACCAT
** * ** * * * * * * *
12029573 TTAAAGTGAGGAATGAGGTTTTGAAAAGCATTAGTGTCTGTAAATGGACTTTTCTTATCAATGAA
254 TTAAAGCAAGTAACAAGGCTTTCAAAGGCATGAGTGACT-TAAATGGACTTTT-TTGTCAATGGA
* **
12029638 TGGCTTTCGCTTCATGTTTCCCA
317 T-GCTTTTGCTTCACATTTCCCA
* * * * * * ** * **
12029661 ATGAAAACAAGAAATTATGATCTATTTGAACAAAAAATGAAAAA-AATTCTGTTTAGTATCATTT
1 ATGCAAACAACAAATTATGATATGTTTTAACCAAAAATGAAAAACAATTCAATTCAAAATCATTT
* * * ** * * *
12029725 ATAAAGTTACAAAACCAATAAAAGCGAGTAATTAGGCTTTCAAAGGCATAAGTAACTATAAATAG
66 ATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCAAAAGCATTAGTGACTATAAAT-G
* * * * * * * * * *
12029790 G-CTATTCCTGTCAATGGATGGCTTTTGCTTCACATTTCCCACTGCAAACAACAAATTATGATCT
130 GACTTTTCTTGTCAATGGATGGCTTTCGATTCACGTTTCCTAATGCAAATATCAAATTATGATAT
* *
12029854 GTTTGAATCAAAAATAAAAAAA
195 GTTTTAA-CAAAAATGAAAAAA
12029876 AAATAATGTA
Statistics
Matches: 2720, Mismatches: 640, Indels: 429
0.72 0.17 0.11
Matches are distributed among these distances:
295 2 0.00
296 1 0.00
299 6 0.00
300 5 0.00
301 4 0.00
302 9 0.00
303 2 0.00
304 1 0.00
306 3 0.00
307 16 0.01
308 3 0.00
309 5 0.00
310 6 0.00
311 15 0.01
312 2 0.00
313 1 0.00
314 6 0.00
315 1 0.00
316 66 0.02
317 42 0.02
318 182 0.07
319 19 0.01
320 5 0.00
321 57 0.02
322 2 0.00
324 1 0.00
325 1 0.00
326 9 0.00
327 81 0.03
328 44 0.02
329 4 0.00
330 3 0.00
333 13 0.00
334 6 0.00
335 7 0.00
336 2 0.00
337 74 0.03
338 78 0.03
339 122 0.04
340 86 0.03
341 306 0.11
342 393 0.14
343 607 0.22
344 246 0.09
345 132 0.05
346 22 0.01
347 2 0.00
348 8 0.00
349 2 0.00
350 2 0.00
351 4 0.00
352 4 0.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.32
Consensus pattern (338 bp):
ATGCAAACAACAAATTATGATATGTTTTAACCAAAAATGAAAAACAATTCAATTCAAAATCATTT
ATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCAAAAGCATTAGTGACTATAAATGG
ACTTTTCTTGTCAATGGATGGCTTTCGATTCACGTTTCCTAATGCAAATATCAAATTATGATATG
TTTTAACAAAAATGAAAAAATATACAATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGC
AAGTAACAAGGCTTTCAAAGGCATGAGTGACTTAAATGGACTTTTTTGTCAATGGATGCTTTTGC
TTCACATTTCCCA
Found at i:12027404 original size:149 final size:146
Alignment explanation
Indices: 12027123--12027419 Score: 346
Period size: 146 Copynumber: 2.0 Consensus size: 146
12027113 GACTTTTCTT
* * * * * *
12027123 GTCAATGGATGGCTTTTGCTTCACGTTTCCCAATGTAAACTAGAAATTAAGATATGTTTTAATAA
1 GTCAATGGATGGCTTTGGCTTCACGTTTCCCAATGCAAACAACAAATTAAGATATGTTTGAACAA
* **
12027188 AAAATGAAAAAAAACAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCAAGTAACTAG
66 AAAATAAAAAAAAACAATACAAAATCATTTATAAAGTTATAAAACCACTTAAAGCAAGTAACTAG
12027253 GCTTTCGAAGGCATGA
131 GCTTTCGAAGGCATGA
* * * * * *
12027269 GTCAATGGATGGCTTTGGCTTCATGTTTCCTAATGCAAACAACAGATTATGATTTGTTTGAACCA
1 GTCAATGGATGGCTTTGGCTTCACGTTTCCCAATGCAAACAACAAATTAAGATATGTTTGAACAA
* * **
12027334 AAAATAAAGAAAAAATTCAATACAAAATTATTTAT-AAGATTATAAAACCATTTAAAGTGAGTAA
66 AAAATAAA-AAAAAA--CAATACAAAATCATTTATAAAG-TTATAAAACCACTTAAAGCAAGTAA
* *
12027398 -TAAGGCTTTTGTAGGCATGA
127 CT-AGGCTTTCGAAGGCATGA
12027418 GT
1 GT
12027420 GACTATAAAT
Statistics
Matches: 125, Mismatches: 21, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
146 60 0.48
147 6 0.05
148 4 0.03
149 55 0.44
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.31
Consensus pattern (146 bp):
GTCAATGGATGGCTTTGGCTTCACGTTTCCCAATGCAAACAACAAATTAAGATATGTTTGAACAA
AAAATAAAAAAAAACAATACAAAATCATTTATAAAGTTATAAAACCACTTAAAGCAAGTAACTAG
GCTTTCGAAGGCATGA
Found at i:12027560 original size:172 final size:171
Alignment explanation
Indices: 12027269--12028058 Score: 860
Period size: 172 Copynumber: 4.6 Consensus size: 171
12027259 GAAGGCATGA
* * * * *
12027269 GTCAATGGATGGCTTTGGCTTCATGTTTC-CTAATGCAAACAACAGATTATGATTTGTTTGAACC
1 GTCAATGGATGGCTTTCGCTTCACGTTTCTC-AATGCAAACAACAAATTATGATATGTTTTAACC
* * * * *
12027333 AAAAATAAAGAAAAAATTCAATACAAAATTATTTAT-AAGATTATAAAACCATTTAAAGTGAGTA
65 AAAAATGAA-AAAAAATTCAACATAAAATCATTTATAAAG-TTATAAAACCACTTAAAGTGAGTA
* *
12027397 ATAAGGCTTTTGTAGGCATGAGTGACTATAAATGAACTTTTCTT
128 ACAAGGCTTTTGAAGGCATGAGTGACTATAAATGAACTTTTCTT
* * * *
12027441 GTCAATGGATGGCTTTCACTTCACGTTTCTCAATGCAAACATCAAATTGTGATTTGTTTTAACCA
1 GTCAATGGATGGCTTTCGCTTCACGTTTCTCAATGCAAACAACAAATTATGATATGTTTTAACC-
* * * * * *
12027506 AAAAATGAAAAACAATTTAACATAAAATCATTTATAAATTTATAAAATCATTTAAAGCGAGTAAC
65 AAAAATGAAAAAAAATTCAACATAAAATCATTTATAAAGTTATAAAACCACTTAAAGTGAGTAAC
*
12027571 AAAGCTTTTGAAGGCATG-GTGACTATAAATCG-ACTTTTCTT
130 AAGGCTTTTGAAGGCATGAGTGACTATAAAT-GAACTTTTCTT
* * * * * *
12027612 CTCAATGGATGGCTTTTGCTTCACGTTT-TCCATTGCAAACAAAAAATTTTGATATGTTTTAATC
1 GTCAATGGATGGCTTTCGCTTCACGTTTCT-CAATGCAAACAACAAATTATGATATGTTTTAACC
* *
12027676 AAAAATGAAAAAAAAATTTCAA-TTCAAATCATTTATAAAGTTATAAAACCACTTAAAGCT-AGT
65 AAAAATG-AAAAAAAA-TTCAACATAAAATCATTTATAAAGTTATAAAACCACTTAAAG-TGAGT
* * *
12027739 AACGAGGCTTTTGAAGGCATTAGT-AGCTATAAATGGACTTTTCTT
127 AACAAGGCTTTTGAAGGCATGAGTGA-CTATAAATGAACTTTTCTT
* * * * * * *
12027784 ATAAATGAATGGCTTTTGCTTCATGTTTCTCATTGCAAACAACAAATTATGATATGTTTTAATCA
1 GTCAATGGATGGCTTTCGCTTCACGTTTCTCAATGCAAACAACAAATTATGATATGTTTTAACCA
* * *
12027849 AAAATGAAAAAAAAAACTCAACATAAAATCATTTAGAAAGTTATAAAACCACTTAAAATGAGTAA
66 AAAATG--AAAAAAAATTCAACATAAAATCATTTATAAAGTTATAAAACCACTTAAAGTGAGTAA
* * * * *
12027914 CAACGCTTTCGAAGGTATAAATGACTATAAAT-AGACTTTTCTT
129 CAAGGCTTTTGAAGGCATGAGTGACTATAAATGA-ACTTTTCTT
* * * * * * * *
12027957 GTTAATGGATGGCTTTCACTTCACATTTCTCAATACAAACAATAAATTATGATCTGTGTTGAACA
1 GTCAATGGATGGCTTTCGCTTCACGTTTCTCAATGCAAACAACAAATTATGATATGT-TTTAACC
* *
12028022 AAAAATGAAAAAAAAATCAACTTAAAATCATTTATAA
65 AAAAATGAAAAAAAATTCAACATAAAATCATTTATAA
12028059 GATTGGAAAA
Statistics
Matches: 526, Mismatches: 74, Indels: 36
0.83 0.12 0.06
Matches are distributed among these distances:
170 8 0.02
171 135 0.26
172 234 0.44
173 137 0.26
174 12 0.02
ACGTcount: A:0.41, C:0.13, G:0.13, T:0.33
Consensus pattern (171 bp):
GTCAATGGATGGCTTTCGCTTCACGTTTCTCAATGCAAACAACAAATTATGATATGTTTTAACCA
AAAATGAAAAAAAATTCAACATAAAATCATTTATAAAGTTATAAAACCACTTAAAGTGAGTAACA
AGGCTTTTGAAGGCATGAGTGACTATAAATGAACTTTTCTT
Found at i:12029497 original size:514 final size:515
Alignment explanation
Indices: 12028461--12029847 Score: 1441
Period size: 514 Copynumber: 2.7 Consensus size: 515
12028451 ATGTTTTTTG
* * * * *
12028461 ATGCGAACAATAAATTATGATTTGTTTCAACCAAAAATGAAAAAAAAATTCAATTTAAAATCATT
1 ATGCAAACAACAAATTATGATATGTTTAAACCAAAAATGAAAAAAAAATTCAATTCAAAATCATT
* * * * **
12028526 TATAAGAATATAAAACTATTTAAAGCAAGTAACAAAGCTTTTGAAGGCATTAGTGACTATAAATG
66 TATAAGATTATAAAACCATTTAAAGCTAGTAACAAGGCTTTCAAAGGCATTAGTGACTATAAATG
* * *
12028591 GACTTTTTTTGTCAATCGATGGCTTTT-GCTTCATGTTTCCCAAGGCAAACAACAAATTATGATT
131 GACTTTTCTTGTCAATGGATGG-TTTTCGCTTCATGTTTCCCAAGGAAAACAACAAATTATGATT
* * *
12028655 TTTTTTAACAAATAATAAAAAACATATTCATCTTAAAATCATTTGTAAGACTATAAAACCATTTA
195 TGTTTTAACAAATAATAAAAAACATATTCATCTGAAAATCATTTATAAGACTATAAAACCATTTA
*
12028720 AAGCGAATAACTAGGCTTTCAAAGGCATGAGTAACCTTAAATGGACTTTTCTATTCAATGGGTGG
260 AAGCGAATAACTAGGCTTTCAAAGGCATGAGTAACCTTAAATGGACTTTTCTAGTCAATGGGTGG
** * *
12028785 CTTTTGCTTCACATTTTCCAATGCAAACATCAAATTACAACCTGTTTTAACTAGAAATGGAAAAC
325 CTTTCACTTCACATTTTCCAATGCAAACATCAAATTACAACCTGTTTTAACCAGAAATAGAAAAC
* * * * *
12028850 AATTCAATTTAAAGTCATTTGTAAGGTTATAAAACCACTTAAAGCGAGTAAAAAGGCTTTCAAAG
390 AATTCAATTTAAAATCATTTATAAAGTTATAAAACCACCTAAAACGAGTAAAAAGGCTTTCAAAG
* **
12028915 GCATGAGTGACAATAAATGGACTGCTCTTGTCAGTGGATGGCTTTCGCTTTGCATCTCCCA
455 GCATAAGTGACAATAAATGGACTGCTCTTGTCAGTGGATGGCTTTCGCTTCACATCTCCCA
* * *
12028976 ATGCAAACAACAAATTATGATATGTTTAAACCAAAAATGAAAAAAAAAATTCAATACAAAGTGAT
1 ATGCAAACAACAAATTATGATATGTTTAAACCAAAAATG-AAAAAAAAATTCAATTCAAAATCAT
* * * *
12029041 TTATAAGATTATAATACCATTTAAAGCTAGTTAA-AAGGCTATCAAAGGCATGAGTGAATATAAA
65 TTATAAGATTATAAAACCATTTAAAGCTAG-TAACAAGGCTTTCAAAGGCATTAGTGACTATAAA
* * * * *
12029105 TGGAATTTGCTTGTCAATGGATGGTTTTCGCTTCATGTTTCCCAAGGTAAATAATAAATTATGAT
129 TGGACTTTTCTTGTCAATGGATGGTTTTCGCTTCATGTTTCCCAAGGAAAACAACAAATTATGAT
** * * * *
12029170 TTGTTTTAATTAATAATGAAAAA-TTTTTTA-CTGAAAATCATTTATAAGACTATAAAACCATTT
194 TTGTTTTAACAAATAATAAAAAACATATTCATCTGAAAATCATTTATAAGACTATAAAACCATTT
* * * * * *
12029233 AAAGTGAATAATTAGGCTTT-AGAAGGTATGAGTGA-CTATAAATGGACTTTTTTGGTCAATGGG
259 AAAGCGAATAACTAGGCTTTCA-AAGGCATGAGTAACCT-TAAATGGACTTTTCTAGTCAATGGG
* *
12029296 TGGCTTTCACTTCACA-TTTCCTAATGCAAACATTAAATTACAATCTGTTTTAACCA-AAACTAG
322 TGGCTTTCACTTCACATTTTCC-AATGCAAACATCAAATTACAACCTGTTTTAACCAGAAA-TAG
* * * **
12029359 AAAACTATTCAATTTAAAATCATTTATAAAGTTATAGAACCACCTAAAATGAGTAAAAAGTTTTT
385 AAAACAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACCTAAAACGAGTAAAAAG-GCTT
* ** ** * * * *
12029424 TGAAA-GCATAAGTG-CTTGTAAATGGACTTTTCTTGTCCA-TTGATGG-TTGTTGCTTCACGTT
449 TCAAAGGCATAAGTGAC-AATAAATGGACTGCTCTTGT-CAGTGGATGGCTT-TCGCTTCACATC
12029485 TCCCA
511 TCCCA
* * * * * *
12029490 TTGCAAACAACAAATTATGATATGTTTTAACTAAAAAT-AAAGAACAATTCAATTCAAAATTATT
1 ATGCAAACAACAAATTATGATATGTTTAAACCAAAAATGAAAAAAAAATTCAATTCAAAATCATT
* * ** * * * * *
12029554 TATAA-AGTTATAAAACCACTTAAAG-TGAGGAATGAGGTTTTGAAAAGCATTAGTGTCTGTAAA
66 TATAAGA-TTATAAAACCATTTAAAGCT-AGTAACAAGGCTTTCAAAGGCATTAGTGACTATAAA
* * * * *
12029617 TGGACTTTTCTTATCAATGAATGGCTTTCGCTTCATGTTTCCCAATGAAAACAAGAAATTATGAT
129 TGGACTTTTCTTGTCAATGGATGGTTTTCGCTTCATGTTTCCCAAGGAAAACAACAAATTATGAT
* * * * * * * ** * * *
12029682 CTATTTGAACAAAAAATGAAAAA-A-ATTC-TGTTTAGTATCATTTATAA-AGTTACAAAACCAA
194 TTGTTTTAACAAATAATAAAAAACATATTCAT-CTGAAAATCATTTATAAGA-CTATAAAACCAT
* * * * *
12029743 TAAAAGCGAGTAATTAGGCTTTCAAAGGCATAAGTAA-CTATAAATAGG-CTATTCCT-GTCAAT
257 TTAAAGCGAATAACTAGGCTTTCAAAGGCATGAGTAACCT-TAAAT-GGACT-TTTCTAGTCAAT
* ** * * *
12029805 GGATGGCTTTTGCTTCACATTTCCCACTGCAAACAACAAATTA
319 GGGTGGCTTTCACTTCACATTTTCCAATGCAAACATCAAATTA
12029848 TGATCTGTTT
Statistics
Matches: 722, Mismatches: 129, Indels: 45
0.81 0.14 0.05
Matches are distributed among these distances:
511 7 0.01
512 236 0.33
513 24 0.03
514 258 0.36
515 51 0.07
516 143 0.20
517 3 0.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (515 bp):
ATGCAAACAACAAATTATGATATGTTTAAACCAAAAATGAAAAAAAAATTCAATTCAAAATCATT
TATAAGATTATAAAACCATTTAAAGCTAGTAACAAGGCTTTCAAAGGCATTAGTGACTATAAATG
GACTTTTCTTGTCAATGGATGGTTTTCGCTTCATGTTTCCCAAGGAAAACAACAAATTATGATTT
GTTTTAACAAATAATAAAAAACATATTCATCTGAAAATCATTTATAAGACTATAAAACCATTTAA
AGCGAATAACTAGGCTTTCAAAGGCATGAGTAACCTTAAATGGACTTTTCTAGTCAATGGGTGGC
TTTCACTTCACATTTTCCAATGCAAACATCAAATTACAACCTGTTTTAACCAGAAATAGAAAACA
ATTCAATTTAAAATCATTTATAAAGTTATAAAACCACCTAAAACGAGTAAAAAGGCTTTCAAAGG
CATAAGTGACAATAAATGGACTGCTCTTGTCAGTGGATGGCTTTCGCTTCACATCTCCCA
Found at i:12029848 original size:170 final size:170
Alignment explanation
Indices: 12028461--12029876 Score: 1133
Period size: 171 Copynumber: 8.3 Consensus size: 170
12028451 ATGTTTTTTG
* * * * *
12028461 ATGCGAACAATAAATTATGATTTGTTTCAACCAAAAATGAAAAAAAAATTCAATTTAAAATCATT
1 ATGCAAACAACAAATTATGATCTGTTTTAACTAAAAATG--AAAAAAATTCAATTTAAAATCATT
* * * * * * ** *
12028526 TAT-AAGAATATAAAACTATTTAAAGCAAGTAACAAAGCTTTTGAAGGCATTAGTGACTATAAAT
64 TATAAAG-TTATAAAACCACTTAAAGCGAGTAATAAGGCTTTCAAAGGCATGAGTGACTATAAAT
* * **
12028590 GGACTTTTTTTGTCAATCGATGGCTTTTGCTTCATGTTTCCCA
128 GGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACATTTCCCA
* * * *
12028633 AGGCAAACAACAAATTATGATTTTTTTTAAC-AAATAATAAAAAACATATTC-ATCTTAAAATCA
1 ATGCAAACAACAAATTATGATCTGTTTTAACTAAA-AATGAAAAA-A-ATTCAAT-TTAAAATCA
* * * * *
12028696 TTTGT-AAGACTATAAAACCATTTAAAGCGAATAACT-AGGCTTTCAAAGGCATGAGTAACCT-T
62 TTTATAAAG-TTATAAAACCACTTAAAGCGAGTAA-TAAGGCTTTCAAAGGCATGAGTGA-CTAT
* *
12028758 AAATGGACTTTTCTAT-TCAATGGGTGGCTTTTGCTTCACATTTTCCA
124 AAATGGACTTTTCT-TGTCAATGGATGGCTTTTGCTTCACATTTCCCA
* ** * * * *
12028805 ATGCAAACATCAAATTACAACCTGTTTTAACTAGAAATGGAAAACAATTCAATTTAAAGTCATTT
1 ATGCAAACAACAAATTATGATCTGTTTTAACTAAAAAT-GAAAAAAATTCAATTTAAAATCATTT
* * * *
12028870 GTAAGGTTATAAAACCACTTAAAGCGAGTAAAAAGGCTTTCAAAGGCATGAGTGACAATAAATGG
65 ATAAAGTTATAAAACCACTTAAAGCGAGTAATAAGGCTTTCAAAGGCATGAGTGACTATAAATGG
** * * ** *
12028935 ACTGCTCTTGTCAGTGGATGGCTTTCGCTTTGCATCTCCCA
130 ACTTTTCTTGTCAATGGATGGCTTTTGCTTCACATTTCCCA
* * * ** * *
12028976 ATGCAAACAACAAATTATGATATGTTTAAACCAAAAATGAAAAAAAAAATTCAATACAAAGTGAT
1 ATGCAAACAACAAATTATGATCTGTTTTAACTAAAAATG---AAAAAAATTCAATTTAAAATCAT
* * * * *
12029041 TTAT-AAGATTATAATACCATTTAAAGCTAGTTAA-AAGGCTATCAAAGGCATGAGTGAATATAA
63 TTATAAAG-TTATAAAACCACTTAAAGCGAG-TAATAAGGCTTTCAAAGGCATGAGTGACTATAA
* * **
12029104 ATGGAATTTGCTTGTCAATGGATGG-TTTTCGCTTCATGTTTCCCA
126 ATGGACTTTTCTTGTCAATGGATGGCTTTT-GCTTCACATTTCCCA
* * * * * * * ** ** * *
12029149 AGGTAAATAATAAATTATGATTTGTTTTAATTAATAATGAAAAATTTTTTACTGAAAATCATTTA
1 ATGCAAACAACAAATTATGATCTGTTTTAACTAAAAATGAAAAAAATTCAATTTAAAATCATTTA
* * * * * *
12029214 T-AAGACTATAAAACCATTTAAAGTGAATAATTAGGCTTT-AGAAGGTATGAGTGACTATAAATG
66 TAAAG-TTATAAAACCACTTAAAGCGAGTAATAAGGCTTTCA-AAGGCATGAGTGACTATAAATG
* ** *
12029277 GACTTTT-TTGGTCAATGGGTGGCTTTCACTTCACATTTCCTA
129 GACTTTTCTT-GTCAATGGATGGCTTTTGCTTCACATTTCCCA
** ** * * **
12029319 ATGCAAACATTAAATTACAATCTGTTTTAACCAAAACTAGAAAACTATTCAATTTAAAATCATTT
1 ATGCAAACAACAAATTATGATCTGTTTTAACTAAAAAT-GAAAAAAATTCAATTTAAAATCATTT
* * ** * ** * * *
12029384 ATAAAGTTATAGAACCACCTAAAATGAGTAAAAAGTTTTTTGAAA-GCATAAGTG-CTTGTAAAT
65 ATAAAGTTATAAAACCACTTAAAGCGAGTAATAAG-GCTTTCAAAGGCATGAGTGAC-TATAAAT
* * *
12029447 GGACTTTTCTTGTCCATTGATGG-TTGTTGCTTCACGTTTCCCA
128 GGACTTTTCTTGTCAATGGATGGCTT-TTGCTTCACATTTCCCA
* * * *
12029490 TTGCAAACAACAAATTATGATATGTTTTAACTAAAAAT-AAAGAACAATTCAATTCAAAATTATT
1 ATGCAAACAACAAATTATGATCTGTTTTAACTAAAAATGAAA-AA-AATTCAATTTAAAATCATT
* * * * * * * * *
12029554 TATAAAGTTATAAAACCACTTAAAGTGAGGAATGAGGTTTTGAAAAGCATTAGTGTCTGTAAATG
64 TATAAAGTTATAAAACCACTTAAAGCGAGTAATAAGGCTTTCAAAGGCATGAGTGACTATAAATG
* * * **
12029619 GACTTTTCTTATCAATGAATGGCTTTCGCTTCATGTTTCCCA
129 GACTTTTCTTGTCAATGGATGGCTTTTGCTTCACATTTCCCA
* * * * * ** **
12029661 ATGAAAACAAGAAATTATGATCTATTTGAACAAAAAATGAAAAAAATTCTGTTTAGTATCATTTA
1 ATGCAAACAACAAATTATGATCTGTTTTAACTAAAAATGAAAAAAATTCAATTTAAAATCATTTA
* * * * * *
12029726 TAAAGTTACAAAACCAATAAAAGCGAGTAATTAGGCTTTCAAAGGCATAAGTAACTATAAATAGG
66 TAAAGTTATAAAACCACTTAAAGCGAGTAATAAGGCTTTCAAAGGCATGAGTGACTATAAAT-GG
* *
12029791 -CTATTCCTGTCAATGGATGGCTTTTGCTTCACATTTCCCA
130 ACTTTTCTTGTCAATGGATGGCTTTTGCTTCACATTTCCCA
* * *
12029831 CTGCAAACAACAAATTATGATCTGTTTGAA-TCAAAAATAAAAAAAA
1 ATGCAAACAACAAATTATGATCTGTTTTAACT-AAAAATGAAAAAAA
12029877 AATAATGTAA
Statistics
Matches: 987, Mismatches: 218, Indels: 80
0.77 0.17 0.06
Matches are distributed among these distances:
169 9 0.01
170 275 0.28
171 382 0.39
172 181 0.18
173 137 0.14
174 3 0.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (170 bp):
ATGCAAACAACAAATTATGATCTGTTTTAACTAAAAATGAAAAAAATTCAATTTAAAATCATTTA
TAAAGTTATAAAACCACTTAAAGCGAGTAATAAGGCTTTCAAAGGCATGAGTGACTATAAATGGA
CTTTTCTTGTCAATGGATGGCTTTTGCTTCACATTTCCCA
Found at i:12032301 original size:43 final size:42
Alignment explanation
Indices: 12032215--12032343 Score: 177
Period size: 43 Copynumber: 3.0 Consensus size: 42
12032205 TTGTGTGATA
* *
12032215 ATGATGACCCAGTTATGTGCGTGTGGGAGTGCACATGAGCTG
1 ATGATGACCCAGCTATGTGCGTGTAGGAGTGCACATGAGCTG
12032257 ATGATGACCCAGCTATGTGCGGTGTAGGAGTGCACATGAGCTG
1 ATGATGACCCAGCTATGTGC-GTGTAGGAGTGCACATGAGCTG
*** * *
12032300 ATGATGACTTGGCCATGTGCGAGTAGGGAGTGCACATGAGCTG
1 ATGATGACCCAGCTATGTGCGTGTA-GGAGTGCACATGAGCTG
12032343 A
1 A
12032344 GTATGGAGGA
Statistics
Matches: 78, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
42 23 0.29
43 55 0.71
ACGTcount: A:0.23, C:0.17, G:0.36, T:0.24
Consensus pattern (42 bp):
ATGATGACCCAGCTATGTGCGTGTAGGAGTGCACATGAGCTG
Found at i:12033885 original size:34 final size:34
Alignment explanation
Indices: 12033788--12033878 Score: 128
Period size: 34 Copynumber: 2.6 Consensus size: 34
12033778 TTTGGCTGTC
* * *
12033788 GATTTTGAAGGCTAAAAAGTGTAATTTTTGCTACT
1 GATTTTGAAGGCTGAAAAGTG-CAGTTTTGCTACT
*
12033823 GATTTTGAAGGTTGAAAAGTGCAGTTTTGCTACT
1 GATTTTGAAGGCTGAAAAGTGCAGTTTTGCTACT
*
12033857 GATTTTGAAGGCTGAAAGGTGC
1 GATTTTGAAGGCTGAAAAGTGC
12033879 GATTTTGGCT
Statistics
Matches: 50, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
34 31 0.62
35 19 0.38
ACGTcount: A:0.29, C:0.09, G:0.26, T:0.36
Consensus pattern (34 bp):
GATTTTGAAGGCTGAAAAGTGCAGTTTTGCTACT
Found at i:12036303 original size:36 final size:36
Alignment explanation
Indices: 12036263--12036363 Score: 148
Period size: 36 Copynumber: 2.8 Consensus size: 36
12036253 TAGCCGGAGT
* * *
12036263 CATCGTGTGCACCCCTACATCGCGCACAGCTAATGC
1 CATCGTGTGCTCCCCCACATCGTGCACAGCTAATGC
* *
12036299 CATCGTGTGCTCCCCCACATCATGCATAGCTAATGC
1 CATCGTGTGCTCCCCCACATCGTGCACAGCTAATGC
*
12036335 CATTGTGTGCTCCCCCACATCGTGCACAG
1 CATCGTGTGCTCCCCCACATCGTGCACAG
12036364 GCAATATCAT
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 57 1.00
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.23
Consensus pattern (36 bp):
CATCGTGTGCTCCCCCACATCGTGCACAGCTAATGC
Found at i:12037278 original size:20 final size:20
Alignment explanation
Indices: 12037253--12037292 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
12037243 ATGGGAAGAA
12037253 GAAGAAGCTACTGGAAATTT
1 GAAGAAGCTACTGGAAATTT
*
12037273 GAAGAAGCTATTGGAAATTT
1 GAAGAAGCTACTGGAAATTT
12037293 TATATTTATC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28
Consensus pattern (20 bp):
GAAGAAGCTACTGGAAATTT
Found at i:12040799 original size:40 final size:38
Alignment explanation
Indices: 12040710--12040805 Score: 120
Period size: 38 Copynumber: 2.5 Consensus size: 38
12040700 CCATGTGCAT
* * *
12040710 GATGTGGGGGGATGTACACGATGGCACTGACTGCGCAC
1 GATGTGGGGGGATGCACACGATGGCACCGACTGCACAC
* * *
12040748 GATGTAGGGGGATGCACACGATGGCACCGGCTATGTACAC
1 GATGTGGGGGGATGCACACGATGGCACCGAC--TGCACAC
12040788 GATGTGGGGGGATGCACA
1 GATGTGGGGGGATGCACA
12040806 AGAGCCAAGT
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
38 27 0.55
40 22 0.45
ACGTcount: A:0.23, C:0.20, G:0.40, T:0.18
Consensus pattern (38 bp):
GATGTGGGGGGATGCACACGATGGCACCGACTGCACAC
Found at i:12042458 original size:25 final size:25
Alignment explanation
Indices: 12042401--12042460 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 25
12042391 GTGGTCGCAA
* * *
12042401 CCACATATATCAACTCGTGGCCTTG
1 CCACGTATAACAACTCATGGCCTTG
12042426 CCACGTATAACAACTCATGGCCTTG
1 CCACGTATAACAACTCATGGCCTTG
* *
12042451 TCATGTATAA
1 CCACGTATAA
12042461 TCATGGATCG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (25 bp):
CCACGTATAACAACTCATGGCCTTG
Found at i:12047638 original size:21 final size:20
Alignment explanation
Indices: 12047609--12047650 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 20
12047599 TAATTTAAAA
12047609 TAAAATAACATAAAATTTAAC
1 TAAAATAAC-TAAAATTTAAC
* *
12047630 TAAATTAACTTAAA-TTAAC
1 TAAAATAACTAAAATTTAAC
12047649 TA
1 TA
12047651 CTCAACATGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 7 0.37
20 4 0.21
21 8 0.42
ACGTcount: A:0.57, C:0.10, G:0.00, T:0.33
Consensus pattern (20 bp):
TAAAATAACTAAAATTTAAC
Found at i:12048139 original size:171 final size:170
Alignment explanation
Indices: 12047780--12050474 Score: 1758
Period size: 171 Copynumber: 15.8 Consensus size: 170
12047770 GAGTTATCAG
** * * * **
12047780 CTATAAATAAACTTTTCTTATCAATGGATGGCTTTCGCTTCATGTTTCACGTTGCAAACAACAAA
1 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAATGCAAACAACAAA
* * * * *
12047845 TTATGATATGCTTTAACCAGAAATGAAAAAAAAATTCAAATTAAAATCATTTATAA-AGTTAAAA
66 TTATGATCTGTTTTAACCAAAAATG-AAAAAAAATTCAACTTAAAATCATTTATAAGA-TTATAA
* * * * * **
12047909 AACCACTTAAAGCGAGTA-ACGAGGCTTTCGAAGACATTAGCAA
129 AACCATTTAAAGCTAGTAGA--AAGCTTTCGAAGGCATGAGTGA
* * * * *
12047952 CTATAAATGGACTTTTCTTGTCAATGGATGGTTTTCACTTTACATTTCCCAATGCAAACTACAAA
1 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAATGCAAACAACAAA
* * * * * *
12048017 TTATGATCTGTTTTAACCAAAAATGTAAAACAATTCAACTTAATATTATTTATAATATTGTAAAA
66 TTATGATCTGTTTTAACCAAAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAA
* * * * *
12048082 ACATTTAAAGCTAGTAGCAAGGCTTTCAAAGGCATAAGTAA
131 CCATTTAAAGCTAGTAG-AAAGCTTTCGAAGGCATGAGTGA
* * * * *
12048123 CTATAAATGTACTTTTCTTGTAAATGGATAGCTTTCGCTTCATGTTTCCCAATACAAACAACAAA
1 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAATGCAAACAACAAA
* * * **** *
12048188 CTATGAATGGACTGGCTTTCACTTCATGTTTCGTGTTGTAAAAAACAAATTATGATATCTTTTAA
66 TTATG-AT---CT-GTTTTAAC--CA------AAAATG--AAAAA-AAA-T-TCA-A-C--TT-A
** * * * * * ** *
12048253 ACAAAAATTAAAAAAAAATTCAATTTAAAATCATTTATAAG--ATTATGAAA-CTTTTTAAAGCA
108 A-AATCATT--TATAAGATT--A--TAAAACCATTTA-AAGCTAGTA-GAAAGCTTTCGAAGGCA
* ***
12048315 AGTAACAA
164 TG-AGTGA
* ** * ** * * * * *** *
12048323 CGCTTTCAAATACATCAATGAC-TATAAATGGACTGGCTTTCACTTCACATTTCTTGATACAAAC
1 --CTAT-AAATGGA-C-TTTTCTTGTCAATGGA-TGGCTTTCGCTTCACGTTTCCCAATGCAAAC
* * *
12048387 AACAAATTATGATCTGTTTGAACTAAAAATGAAAAAAAAATTCAA--TACGAAATCATGTATAAG
60 AACAAATTATGATCTGTTTTAACCAAAAATG-AAAAAAAATTCAACTTA--AAATCATTTATAAG
* *
12048450 ATTATAAGACCATTTAAAG-TGATTA-ACAAGCTTTTCGAAGGCATGAGT-A
122 ATTATAAAACCATTTAAAGCT-AGTAGA-AAGC-TTTCGAAGGCATGAGTGA
* * * * * * *
12048499 GCTATAGATGGACTTCTCTTGTTAATGGATGGGTTTCGCTTCACGTTTGCCATTGCAAACAATAA
1 -CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAATGCAAACAACAA
* * * * * ** * * *
12048564 ACTATAATATGATTTT-ACCAAAACTGGAAAAAAATTCATTTTAAAAACATTTA-AAAAGTTATG
65 ATTATGATCTG-TTTTAACCAAAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGA-TTATA
* * * * *
12048627 AAACCATTTAAAGCGATTGACAAAGGTTT-GAAAAGCATGAGTGA
128 AAACCATTTAAAGCTAGT-AGAAAGCTTTCG-AAGGCATGAGTGA
* * * * * * *
12048671 CTATAAATGTACTTTTTTTGTCAATTGATGGCTTTTGCTTCACGTTTCCTAAAGCAAACATCAAA
1 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAATGCAAACAACAAA
*** ** * * *
12048736 TTGCAATCTGTTTTAAGAAAAAATGAGAAAAAACTTTCAACTTAAAATCAGTTATCAGATTATAA
66 TTATGATCTGTTTTAACCAAAAATGA-AAAAAA-ATTCAACTTAAAATCATTTATAAGATTATAA
**
12048801 AACCATTTAAAGGAAGTAAGAAAGCTTTCGAAGGCATGAGTGA
129 AACCATTTAAAGCTAGT-AGAAAGCTTTCGAAGGCATGAGTGA
** * * **
12048844 AAATAAGTGGACTTTT-TTGTCAATGGATGGCTTTCGCTTCATGTTTATCAATGCAAACAACAAA
1 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAATGCAAACAACAAA
* * ** *
12048908 TTATGATTTGTTTTAACCAAAAATTAAGAAATCATTCAATTTAAAATCATTTATAAGATTATAAA
66 TTATGATCTGTTTTAACCAAAAATGAA-AAAAAATTCAACTTAAAATCATTTATAAGATTATAAA
* *
12048973 ATCATTTAACGCTAGTAGCAAAGCTTTCGAAGGCATGAGTGA
130 ACCATTTAAAGCTAGTAG-AAAGCTTTCGAAGGCATGAGTGA
* * * *
12049015 CTATAAATGGACTTTTC-T-T-AGATGGATGGCTTTCACTTCATGTTTTCCAATGCAAACATCAA
1 CTATAAATGGACTTTTCTTGTCA-ATGGATGGCTTTCGCTTCACGTTTCCCAATGCAAACAACAA
* *
12049077 ATTGTGATCAAT-TTTTAACCAAAAATGAAAAAAAAAACATTCAACTTAAAATTATTTATAAGAT
65 ATTATGATC--TGTTTTAACCAAAAATG---AAAAAAA-ATTCAACTTAAAATCATTTATAAGAT
* * * * *
12049141 TATAAAACCATTTAATGTTAGTAAGAAAGCTTTCAAAGGTATGGGTGA
124 TATAAAACCATTTAAAGCTAGT-AGAAAGCTTTCGAAGGCATGAGTGA
* * *
12049189 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCACTTCATGTTTCCCAATGCAAACATCAAA
1 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAATGCAAACAACAAA
* ** * * * * * *
12049254 TTGTGATAAGTTTAAACAAAAAATGAAAAAAAATTCAACTTAAAATTAGTTATAAGATTAGAAGA
66 TTATGATCTGTTTTAACCAAAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAA
* *
12049319 CCATTTAAAGCAAGTAAGAAAGCTTTCGAAGGCATGAATGA
131 CCATTTAAAGCTAGT-AGAAAGCTTTCGAAGGCATGAGTGA
* * * * * * * * *
12049360 CTATAAATGTACTCTTCCTGTCAATGGTTGGCATTCGCTTAACGTTTCTCGATGCAAATAACAAA
1 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAATGCAAACAACAAA
* * * * * *
12049425 TTATGATATGTTTGAACTAAAAATGAAACAAAAATT-AATTTAAAATGATTTATAAGATTATTAA
66 TTATGATCTGTTTTAACCAAAAATGAAA-AAAAATTCAACTTAAAATCATTTATAAGATTATAAA
*
12049489 ACCATTTAAA---A-T-G--A------GAAGGCATGAATGA
130 ACCATTTAAAGCTAGTAGAAAGCTTTCGAAGGCATGAGTGA
* * * * * * *
12049517 CTATAAATGGACTTTTCTTGTCAATGAATAGATTTCGCTTCACATTTCCCATTGCAAAAAATAAA
1 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAATGCAAACAACAAA
* *
12049582 TTATGATATGTTTTAACCAAAAATAAAACAAAAATTCTAA-TTCAAAATCATTTATAA-AGTTAT
66 TTATGATCTGTTTTAACCAAAAATGAAA-AAAAATTC-AACTT-AAAATCATTTATAAGA-TTAT
* * * * * *
12049645 -AAACCACTTAAAACAAGTA-ACGAGGCTTTCAAAGGCATTAGTGA
127 AAAACCATTTAAAGCTAGTAGA--AAGCTTTCGAAGGCATGAGTGA
* * * * * **
12049689 GTATAAAAT-GACTTTTCTTGTTAA-GGATGGCTTTGGTTTTACGTTTCTTAATGCAAACAACAA
1 CTAT-AAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAATGCAAACAACAA
* * * * *
12049752 ATTATGATTTGTTTTAACCAAAAATGTAAAAAACTT-AATTTAAAATCATTTAGAAGATTATAAA
65 ATTATGATCTGTTTTAACCAAAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAA
* * *
12049816 ACCACTTAAAGCTAATAATAAAGCTTTCGAAGGCATGAGTGA
130 ACCATTTAAAGCTAGT-AGAAAGCTTTCGAAGGCATGAGTGA
* * * * * *
12049858 CTATAAATGGATTTTTCTTGTCGATGGAGGGCTTTCACTTGATG-TT-----TG----C--C-AA
1 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAATGCAAACAACAAA
* * * *
12049910 TTGTGATCAGTTTTAACCAAAAATGAAAAAAACATTCAACTTAAAATCAATTATAAGATTATATA
66 TTATGATCTGTTTTAACCAAAAATGAAAAAAA-ATTCAACTTAAAATCATTTATAAGATTATAAA
* *
12049975 ACCATTTAAAGCGAGTAAGAAAACTTTCGAAGGCATGAGTGA
130 ACCATTTAAAGCTAGT-AGAAAGCTTTCGAAGGCATGAGTGA
* * * * * * ** *
12050017 CTATAAATGTACTCTTCATGTTAATGGTTGGCTTTCGCTTAACGTTTTTCGATGCAAACAACAAA
1 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAATGCAAACAACAAA
* * * *
12050082 TTATGATCTGTTTGAACCAAAAATGAAAATAAAA-TCTAATTTAAAATGATTTATAAGATTATTA
66 TTATGATCTGTTTTAACCAAAAATGAAAA-AAAATTC-AACTTAAAATCATTTATAAGATTATAA
*
12050146 AACCATTTAAA---A-T-G--A------GAAGGCATGAATGA
129 AACCATTTAAAGCTAGTAGAAAGCTTTCGAAGGCATGAGTGA
* * * * * * *
12050175 CTATAAATGGACTTTTCTTGTCAAGGGATAGTTTTCGCTTCACATTTCCCATTGCAAAAAATAAA
1 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAATGCAAACAACAAA
* * *
12050240 TTATGATATGTTTTTACCAAAAATAAAAAAAAATTCTAA-TTCAAAATCATTTATAA-AGTTAT-
66 TTATGATCTGTTTTAACCAAAAATGAAAAAAAATTC-AACTT-AAAATCATTTATAAGA-TTATA
* * * * *
12050302 AAACCACTTAAAACAAGTA-ACGAGGCTTTCGAAGGCATTAGTGA
128 AAACCATTTAAAGCTAGTAGA--AAGCTTTCGAAGGCATGAGTGA
* * ** * * *
12050346 CTATAAATTGACTTTTCTTGTCAATGGATGGCTTTCGTTTCACGTTTCCCGTTGTAAAAAATAAA
1 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAATGCAAACAACAAA
** * *
12050411 CAATGATATGTTTTAACAAAAAAT-AAAAAAAATTCTAA-TTCAAAATCATTTATAA-AGTTATA
66 TTATGATCTGTTTTAACCAAAAATGAAAAAAAATTC-AACTT-AAAATCATTTATAAGA-TTATA
12050473 AA
128 AA
12050475 CCACTAAAAA
Statistics
Matches: 1988, Mismatches: 392, Indels: 287
0.75 0.15 0.11
Matches are distributed among these distances:
157 145 0.07
158 126 0.06
159 113 0.06
160 4 0.00
161 2 0.00
162 1 0.00
163 1 0.00
164 3 0.00
165 3 0.00
166 1 0.00
167 1 0.00
168 25 0.01
169 57 0.03
170 112 0.06
171 649 0.33
172 300 0.15
173 92 0.05
174 89 0.04
175 26 0.01
176 68 0.03
177 7 0.00
178 12 0.01
180 6 0.00
181 1 0.00
182 5 0.00
183 1 0.00
184 2 0.00
186 4 0.00
187 3 0.00
188 3 0.00
189 3 0.00
190 4 0.00
191 7 0.00
192 2 0.00
193 2 0.00
194 2 0.00
195 4 0.00
197 6 0.00
198 1 0.00
199 9 0.00
200 13 0.01
201 14 0.01
202 6 0.00
203 5 0.00
204 12 0.01
205 36 0.02
ACGTcount: A:0.40, C:0.14, G:0.13, T:0.33
Consensus pattern (170 bp):
CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAATGCAAACAACAAA
TTATGATCTGTTTTAACCAAAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAA
CCATTTAAAGCTAGTAGAAAGCTTTCGAAGGCATGAGTGA
Found at i:12048477 original size:156 final size:154
Alignment explanation
Indices: 12048187--12048483 Score: 364
Period size: 156 Copynumber: 1.9 Consensus size: 154
12048177 CAAACAACAA
* ** * **
12048187 ACTATGAATGGACTGGCTTTCACTTCATGTTTCGTGTTGTAAAAAACAAATTATGATATCTTTTA
1 ACTATAAATGGACTGGCTTTCACTTCACATTTCGTGATACAAAAAACAAATTATGA-ATCTTTTA
* ** * **
12048252 AACAAAAATTAAAAAAAAATTCAATTTAAAATCATTTATAAGATTATGAAACTTTTTAAAGCAAG
65 AACAAAAATGAAAAAAAAATTCAATACAAAATCATGTATAAGATTATGAAACCATTTAAAGCAAG
12048317 TAACAACGCTTTCAAATACATCAATG
130 TAACAA-GCTTTCAAATACATCAATG
* * *
12048343 ACTATAAATGGACTGGCTTTCACTTCACATTTCTTGATACAAACAACAAATTATG-ATCTGTTTG
1 ACTATAAATGGACTGGCTTTCACTTCACATTTCGTGATACAAAAAACAAATTATGAATCT-TTTA
* **
12048407 AACTAAAAATGAAAAAAAAATTCAATACGAAATCATGTATAAGATTAT-AAGACCATTTAAAGTG
65 AAC-AAAAATGAAAAAAAAATTCAATACAAAATCATGTATAAGATTATGAA-ACCATTTAAAGCA
*
12048471 ATTAACAAGCTTT
128 AGTAACAAGCTTT
12048484 TCGAAGGCAT
Statistics
Matches: 119, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
154 4 0.03
155 13 0.11
156 102 0.86
ACGTcount: A:0.43, C:0.13, G:0.11, T:0.33
Consensus pattern (154 bp):
ACTATAAATGGACTGGCTTTCACTTCACATTTCGTGATACAAAAAACAAATTATGAATCTTTTAA
ACAAAAATGAAAAAAAAATTCAATACAAAATCATGTATAAGATTATGAAACCATTTAAAGCAAGT
AACAAGCTTTCAAATACATCAATG
Found at i:12049169 original size:345 final size:339
Alignment explanation
Indices: 12048382--12050474 Score: 1676
Period size: 328 Copynumber: 6.2 Consensus size: 339
12048372 TTTCTTGATA
* * * *** *
12048382 CAAACAACAAATTATGATCTGTTTGAACTAAAAATGAAAAAAAAATTCAATACGAAATCATGTAT
1 CAAACAACAAATTATGATCTGTTTTAACCAAAAATGAAAAAAAACTT-AATTTAAAATCATTTAT
* * * * *
12048447 AAGATTATAAGACCATTTAAAGTGATTAA-CAAGCTTTTCGAAGGCATGAGT-AGCTATAGATGG
65 AAGATTATAAAACCATTTAAAGTTAGTAAGAAAGC-TTTCGAAGGCATGAGTGA-CTATAAATGG
* * * * * * * * *
12048510 ACTTCTCTTGTTAATGGATGGGTTTCGCTTCACGTTTGCCATTGCAAACAATAAACTATAATATG
128 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATGCAAACAACAAATTATGATATG
* * * * * *
12048575 ATTTT-ACCAAAACTGGAAAAAAATTCATTTTAAAAACATTTA-AAAAGTTATGAAACCATTTAA
193 -TTTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTATAAGA-TTATAAAACCATTTAA
* * * * * *
12048638 AGCGA-TTGACAAAGGTTT-GAAAAGCATGAGTGACTATAAATGTACTTTT-TTTGTCAATTGAT
256 AGCAAGTAG-CAAAGCTTTCG-AAGGCATGAGTGACTATAAATGTACTTTTCTTAG---ATGGAT
* * *
12048700 GGCTTTTGCTTCACGTTTCCTAAAG
316 GGCTTTCGCTTAACGTTTCC-AATG
* *** ** * * *
12048725 CAAACATCAAATTGCAATCTGTTTTAAGAAAAAATGAGAAAAAACTTTCAACTTAAAATCAGTTA
1 CAAACAACAAATTATGATCTGTTTTAACCAAAAATGAAAAAAAAC-TT-AATTTAAAATCATTTA
* ** ** *
12048790 TCAGATTATAAAACCATTTAAAGGAAGTAAGAAAGCTTTCGAAGGCATGAGTGAAAATAAGTGGA
64 TAAGATTATAAAACCATTTAAAGTTAGTAAGAAAGCTTTCGAAGGCATGAGTGACTATAAATGGA
** *
12048855 CTTTT-TTGTCAATGGATGGCTTTCGCTTCATGTTTATCAATGCAAACAACAAATTATGATTTGT
129 CTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATGCAAACAACAAATTATGATATGT
* ** * *
12048919 TTTAACCAAAAATTAAGAAATCATTCAATTTAAAATCATTTATAAGATTATAAAATCATTTAACG
194 TTTAACCAAAAATGAA-AAAAAATTCAATTTAAAATCATTTATAAGATTATAAAACCATTTAAAG
* *
12048984 CTAGTAGCAAAGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTAGATGGATGGCTTTC
258 CAAGTAGCAAAGCTTTCGAAGGCATGAGTGACTATAAATGTACTTTTCTTAGATGGATGGCTTTC
* * *
12049049 ACTTCATGTTTTCCAATG
323 GCTTAACG-TTTCCAATG
* * * *
12049067 CAAACATCAAATTGTGATCAAT-TTTTAACCAAAAATGAAAAAAAAAACATTCAACTTAAAATTA
1 CAAACAACAAATTATGATC--TGTTTTAACCAAAAATG--AAAAAAAAC-TT-AATTTAAAATCA
* * * *
12049131 TTTATAAGATTATAAAACCATTTAATGTTAGTAAGAAAGCTTTCAAAGGTATGGGTGACTATAAA
60 TTTATAAGATTATAAAACCATTTAAAGTTAGTAAGAAAGCTTTCGAAGGCATGAGTGACTATAAA
* * *
12049196 TGGACTTTTCTTGTCAATGGATGGCTTTCACTTCATGTTTCCCAATGCAAACATCAAATTGTGAT
125 TGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATGCAAACAACAAATTATGAT
* * * * * * * *
12049261 AAGTTTAAACAAAAAATGAAAAAAAATTCAACTTAAAATTAGTTATAAGATTAGAAGACCATTTA
190 ATGTTTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTATAAGATTATAAAACCATTTA
* * *
12049326 AAGCAAGTAAG-AAAGCTTTCGAAGGCATGAATGACTATAAATGTACTCTTCCTGTCA-ATGGTT
255 AAGCAAGT-AGCAAAGCTTTCGAAGGCATGAGTGACTATAAATGTACT-TTTCT-T-AGATGGAT
* *
12049389 GGCATTCGCTTAACGTTTCTCGATG
316 GGCTTTCGCTTAACGTTTC-CAATG
* * * * *
12049414 CAAATAACAAATTATGATATGTTTGAACTAAAAATGAAACAAAAA-TTAATTTAAAATGATTTAT
1 CAAACAACAAATTATGATCTGTTTTAACCAAAAATGAAA-AAAAACTTAATTTAAAATCATTTAT
* *
12049478 AAGATTATTAAACCATTTAAA---A-T--G--A------GAAGGCATGAATGACTATAAATGGAC
65 AAGATTATAAAACCATTTAAAGTTAGTAAGAAAGCTTTCGAAGGCATGAGTGACTATAAATGGAC
* * * ** * * *
12049529 TTTTCTTGTCAATGAATAGATTTCGCTTCACATTTCCCATTGCAAAAAATAAATTATGATATGTT
130 TTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATGCAAACAACAAATTATGATATGTT
* * *
12049594 TTAACCAAAAATAAAACAAAAATTCTAATTCAAAATCATTTATAA-AGTTAT-AAACCACTTAAA
195 TTAACCAAAAATGAAA-AAAAATTC-AATTTAAAATCATTTATAAGA-TTATAAAACCATTTAAA
* * * * * * * *
12049657 ACAAGTAACGAGGCTTTCAAAGGCATTAGTGAGTATAAAATG-ACTTTTCTT-GTTAAGGATGGC
257 GCAAGTAGCAAAGCTTTCGAAGGCATGAGTGACTAT-AAATGTACTTTTCTTAG--ATGGATGGC
* * * *
12049720 TTTGGTTTTACGTTTCTTAATG
319 TTTCGCTTAACGTTTC-CAATG
* * *
12049742 CAAACAACAAATTATGATTTGTTTTAACCAAAAATG-TAAAAAACTTAATTTAAAATCATTTAGA
1 CAAACAACAAATTATGATCTGTTTTAACCAAAAATGAAAAAAAACTTAATTTAAAATCATTTATA
* * * * *
12049806 AGATTATAAAACCACTTAAAGCTAATAATAAAGCTTTCGAAGGCATGAGTGACTATAAATGGATT
66 AGATTATAAAACCATTTAAAGTTAGTAAGAAAGCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * * *
12049871 TTTCTTGTCGATGGAGGGCTTTCACTTGATG-TT-----TG----C--C-AATTGTGATCA-GTT
131 TTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATGCAAACAACAAATTATGAT-ATGTT
* * *
12049922 TTAACCAAAAATGAAAAAAACATTCAACTTAAAATCAATTATAAGATTATATAACCATTTAAAGC
195 TTAACCAAAAATGAAAAAAA-ATTCAATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGC
* * * *
12049987 GAGTAAG-AAAACTTTCGAAGGCATGAGTGACTATAAATGTACTCTTCATGTTA-ATGGTTGGCT
259 AAGT-AGCAAAGCTTTCGAAGGCATGAGTGACTATAAATGTACT-TT--TCTTAGATGGATGGCT
* *
12050050 TTCGCTTAACGTTTTTCGATG
320 TTCGCTTAACG-TTTCCAATG
* *
12050071 CAAACAACAAATTATGATCTGTTTGAACCAAAAATGAAAATAAAA-TCTAATTTAAAATGATTTA
1 CAAACAACAAATTATGATCTGTTTTAACCAAAAATGAAAA-AAAACT-TAATTTAAAATCATTTA
* *
12050135 TAAGATTATTAAACCATTTAAA---A-T--G--A------GAAGGCATGAATGACTATAAATGGA
64 TAAGATTATAAAACCATTTAAAGTTAGTAAGAAAGCTTTCGAAGGCATGAGTGACTATAAATGGA
* * * ** * * *
12050186 CTTTTCTTGTCAAGGGATAGTTTTCGCTTCACATTTCCCATTGCAAAAAATAAATTATGATATGT
129 CTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATGCAAACAACAAATTATGATATGT
* * * *
12050251 TTTTACCAAAAATAAAAAAAAATTCTAATTCAAAATCATTTATAA-AGTTAT-AAACCACTTAAA
194 TTTAACCAAAAATGAAAAAAAATTC-AATTTAAAATCATTTATAAGA-TTATAAAACCATTTAAA
* * * * *
12050314 ACAAGTAACGAGGCTTTCGAAGGCATTAGTGACTATAAAT-TGACTTTTCTT-GTCAATGGATGG
257 GCAAGTAGCAAAGCTTTCGAAGGCATGAGTGACTATAAATGT-ACTTTTCTTAG---ATGGATGG
* * **
12050377 CTTTCGTTTCACGTTTCCCGTTG
318 CTTTCGCTTAACGTTT-CCAATG
* * * ** * * * *
12050400 TAAAAAATAAACAATGATATGTTTTAACAAAAAAT-AAAAAAAATTCTAATTCAAAATCATTTAT
1 CAAACAACAAATTATGATCTGTTTTAACCAAAAATGAAAAAAAACT-TAATTTAAAATCATTTAT
12050464 AA-AGTTATAAA
65 AAGA-TTATAAA
12050475 CCACTAAAAA
Statistics
Matches: 1407, Mismatches: 259, Indels: 183
0.76 0.14 0.10
Matches are distributed among these distances:
317 47 0.03
318 2 0.00
323 3 0.00
326 8 0.01
327 73 0.05
328 255 0.18
329 204 0.14
330 79 0.06
331 43 0.03
334 1 0.00
335 3 0.00
336 1 0.00
338 1 0.00
339 1 0.00
340 2 0.00
341 47 0.03
342 75 0.05
343 113 0.08
344 142 0.10
345 182 0.13
346 88 0.06
347 36 0.03
348 1 0.00
ACGTcount: A:0.40, C:0.13, G:0.14, T:0.33
Consensus pattern (339 bp):
CAAACAACAAATTATGATCTGTTTTAACCAAAAATGAAAAAAAACTTAATTTAAAATCATTTATA
AGATTATAAAACCATTTAAAGTTAGTAAGAAAGCTTTCGAAGGCATGAGTGACTATAAATGGACT
TTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATGCAAACAACAAATTATGATATGTTT
TAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAA
GTAGCAAAGCTTTCGAAGGCATGAGTGACTATAAATGTACTTTTCTTAGATGGATGGCTTTCGCT
TAACGTTTCCAATG
Found at i:12050050 original size:159 final size:157
Alignment explanation
Indices: 12049762--12050052 Score: 402
Period size: 159 Copynumber: 1.8 Consensus size: 157
12049752 ATTATGATTT
* * *
12049762 GTTTTAACCAAAAATGTAAAAAACTTAATTTAAAATCATTTAGAAGATTATAAAACCACTTAAAG
1 GTTTTAACCAAAAATGAAAAAAACTTAACTTAAAATCAATTAGAAGATTATAAAACCACTTAAAG
* * * * * * *
12049827 CTAATAATAAAGCTTTCGAAGGCATGAGTGACTATAAATGGATTTTTCTTGTCGATGGAGGGCTT
66 CGAATAAGAAAACTTTCGAAGGCATGAGTGACTATAAATGGACTCTTCATGTCAATGGAGGGCTT
12049892 TCACTTGATGTTTGCCAATTGTGATCA
131 TCACTTGATGTTTGCCAATTGTGATCA
* * *
12049919 GTTTTAACCAAAAATGAAAAAAACATTCAACTTAAAATCAATTATAAGATTATATAACCATTTAA
1 GTTTTAACCAAAAATGAAAAAAAC-TT-AACTTAAAATCAATTAGAAGATTATAAAACCACTTAA
* * * **
12049984 AGCGAGTAAGAAAACTTTCGAAGGCATGAGTGACTATAAATGTACTCTTCATGTTAATGGTTGGC
64 AGCGAATAAGAAAACTTTCGAAGGCATGAGTGACTATAAATGGACTCTTCATGTCAATGGAGGGC
12050049 TTTC
129 TTTC
12050053 GCTTAACGTT
Statistics
Matches: 114, Mismatches: 18, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
157 23 0.20
158 2 0.02
159 89 0.78
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33
Consensus pattern (157 bp):
GTTTTAACCAAAAATGAAAAAAACTTAACTTAAAATCAATTAGAAGATTATAAAACCACTTAAAG
CGAATAAGAAAACTTTCGAAGGCATGAGTGACTATAAATGGACTCTTCATGTCAATGGAGGGCTT
TCACTTGATGTTTGCCAATTGTGATCA
Found at i:12050059 original size:657 final size:664
Alignment explanation
Indices: 12048830--12050393 Score: 2095
Period size: 657 Copynumber: 2.3 Consensus size: 664
12048820 GAAAGCTTTC
* ** * * * ** **
12048830 GAAGGCATGAGTGAAAATAAGTGGACTTTT-TTGTCAATGGATGGCTTTCGCTTCATGTTTATCA
1 GAAGGCATGAATGACTATAAATGGACTTTTCTTGTCAATGGATAGATTTCGCTTCACATTTCCCA
* * * * * ** *
12048894 ATGCAAACAACAAATTATGATTTGTTTTAACCAAAAATTAAGAAATCATTC-AATTTAAAATCAT
66 TTGCAAAAAATAAATTATGATATGTTTTAACCAAAAA-TAAAAAAAAATTCTAATTCAAAATCAT
* * ** * * * * *
12048958 TTAT-AAGATTATAAAATCATTTAACGCTAGTAGCAAAGCTTTCGAAGGCATGAGTGACTAT-AA
130 TTATAAAG-TTAT-AAACCACTTAAAACAAGTAACGAGGCTTTCGAAGGCATTAGTGACTATAAA
* ** * * *
12049021 ATGGACTTTTCTTAG-ATGGATGGCTTTCACTTCATGTTT-TCCAATGCAAACATCAAATTGTGA
193 AT-GACTTTTCTT-GTAAGGATGGCTTTCGTTTCACGTTTCTCCAATGCAAACAACAAATTATGA
* *
12049084 TCAATTTTTAACCAAAAATGAAAAAAAAAACATTCAACTTAAAATTATTTATAAGATTATAAAAC
256 T-AATTTTTAACCAAAAATG--AAAAAAAACATTCAACTTAAAATCATTTAGAAGATTATAAAAC
* * * * * *
12049149 CATTTAATGTTAGTAAGAAAGCTTTCAAAGGTATGGGTGACTATAAATGGACTTTTCTTGTCAAT
318 CACTTAAAGCTAATAAGAAAGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAAT
*
12049214 GGATGGCTTTCACTTCATGTTTCCCAATGCAAACATCAAATTGTGATAAGTTTAAACAAAAAATG
383 GGAGGGCTTTCACTTCATGTTT--C--TG---ACA-CAAATTGTGATAAGTTTAAACAAAAAATG
* * *
12049279 AAAAAAAATTCAACTTAAAATTAGTTATAAGATTAGAAGACCATTTAAAGCAAGTAAGAAAGCTT
440 AAAAAAAATTCAACTTAAAATCAATTATAAGATTAGAAGACCATTTAAAGCAAGTAAGAAAACTT
*
12049344 TCGAAGGCATGAATGACTATAAATGTACTCTTCCTGTCAATGGTTGGCATTCGCTTAACGTTTCT
505 TCGAAGGCATGAATGACTATAAATGTACTCTTCATGTCAATGGTTGGCATTCGCTTAACGTTTCT
* *
12049409 CGATGCAAATAACAAATTATGATATGTTTGAACTAAAAATGAAACA-AAAAT-TAATTTAAAATG
570 CGATGCAAACAACAAATTATGATATGTTTGAACCAAAAATGAAA-ATAAAATCTAATTTAAAATG
12049472 ATTTATAAGATTATTAAACCATTTAAAATGA
634 ATTTATAAGATTATTAAACCATTTAAAATGA
*
12049503 GAAGGCATGAATGACTATAAATGGACTTTTCTTGTCAATGAATAGATTTCGCTTCACATTTCCCA
1 GAAGGCATGAATGACTATAAATGGACTTTTCTTGTCAATGGATAGATTTCGCTTCACATTTCCCA
12049568 TTGCAAAAAATAAATTATGATATGTTTTAACCAAAAATAAAACAAAAATTCTAATTCAAAATCAT
66 TTGCAAAAAATAAATTATGATATGTTTTAACCAAAAATAAAA-AAAAATTCTAATTCAAAATCAT
* *
12049633 TTATAAAGTTATAAACCACTTAAAACAAGTAACGAGGCTTTCAAAGGCATTAGTGAGTATAAAAT
130 TTATAAAGTTATAAACCACTTAAAACAAGTAACGAGGCTTTCGAAGGCATTAGTGACTATAAAAT
* * * *
12049698 GACTTTTCTTGTTAAGGATGGCTTTGGTTTTACGTTTCT-TAATGCAAACAACAAATTATGAT-T
195 GACTTTTCTTG-TAAGGATGGCTTTCGTTTCACGTTTCTCCAATGCAAACAACAAATTATGATAA
* *
12049761 TGTTTTAACCAAAAATG-TAAAAAAC-TT-AATTTAAAATCATTTAGAAGATTATAAAACCACTT
259 T-TTTTAACCAAAAATGAAAAAAAACATTCAACTTAAAATCATTTAGAAGATTATAAAACCACTT
* * * *
12049823 AAAGCTAATAATAAAGCTTTCGAAGGCATGAGTGACTATAAATGGATTTTTCTTGTCGATGGAGG
323 AAAGCTAATAAGAAAGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGAGG
* * * *
12049888 GCTTTCACTTGATG-TT-TG-C-C-AATTGTGATCAGTTTTAACCAAAAATGAAAAAAACATTCA
388 GCTTTCACTTCATGTTTCTGACACAAATTGTGATAAGTTTAAACAAAAAATGAAAAAAA-ATTCA
* *
12049948 ACTTAAAATCAATTATAAGATTATATA-ACCATTTAAAGCGAGTAAGAAAACTTTCGAAGGCATG
452 ACTTAAAATCAATTATAAGATTAGA-AGACCATTTAAAGCAAGTAAGAAAACTTTCGAAGGCATG
* * * *
12050012 AGTGACTATAAATGTACTCTTCATGTTAATGGTTGGCTTTCGCTTAACGTTTTTCGATGCAAACA
516 AATGACTATAAATGTACTCTTCATGTCAATGGTTGGCATTCGCTTAACGTTTCTCGATGCAAACA
*
12050077 ACAAATTATGATCTGTTTGAACCAAAAATGAAAATAAAATCTAATTTAAAATGATTTATAAGATT
581 ACAAATTATGATATGTTTGAACCAAAAATGAAAATAAAATCTAATTTAAAATGATTTATAAGATT
12050142 ATTAAACCATTTAAAATGA
646 ATTAAACCATTTAAAATGA
* *
12050161 GAAGGCATGAATGACTATAAATGGACTTTTCTTGTCAAGGGATAGTTTTCGCTTCACATTTCCCA
1 GAAGGCATGAATGACTATAAATGGACTTTTCTTGTCAATGGATAGATTTCGCTTCACATTTCCCA
*
12050226 TTGCAAAAAATAAATTATGATATGTTTTTACCAAAAATAAAAAAAAATTCTAATTCAAAATCATT
66 TTGCAAAAAATAAATTATGATATGTTTTAACCAAAAATAAAAAAAAATTCTAATTCAAAATCATT
*
12050291 TATAAAGTTATAAACCACTTAAAACAAGTAACGAGGCTTTCGAAGGCATTAGTGACTATAAATTG
131 TATAAAGTTATAAACCACTTAAAACAAGTAACGAGGCTTTCGAAGGCATTAGTGACTATAAAATG
12050356 ACTTTTCTTGTCAATGGATGGCTTTCGTTTCACGTTTC
196 ACTTTTCTTGT-AA-GGATGGCTTTCGTTTCACGTTTC
12050394 CCGTTGTAAA
Statistics
Matches: 795, Mismatches: 81, Indels: 45
0.86 0.09 0.05
Matches are distributed among these distances:
656 33 0.04
657 255 0.32
658 168 0.21
659 1 0.00
663 2 0.00
668 2 0.00
669 99 0.12
670 2 0.00
671 7 0.01
673 32 0.04
674 128 0.16
675 62 0.08
676 4 0.01
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.33
Consensus pattern (664 bp):
GAAGGCATGAATGACTATAAATGGACTTTTCTTGTCAATGGATAGATTTCGCTTCACATTTCCCA
TTGCAAAAAATAAATTATGATATGTTTTAACCAAAAATAAAAAAAAATTCTAATTCAAAATCATT
TATAAAGTTATAAACCACTTAAAACAAGTAACGAGGCTTTCGAAGGCATTAGTGACTATAAAATG
ACTTTTCTTGTAAGGATGGCTTTCGTTTCACGTTTCTCCAATGCAAACAACAAATTATGATAATT
TTTAACCAAAAATGAAAAAAAACATTCAACTTAAAATCATTTAGAAGATTATAAAACCACTTAAA
GCTAATAAGAAAGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGAGGGCT
TTCACTTCATGTTTCTGACACAAATTGTGATAAGTTTAAACAAAAAATGAAAAAAAATTCAACTT
AAAATCAATTATAAGATTAGAAGACCATTTAAAGCAAGTAAGAAAACTTTCGAAGGCATGAATGA
CTATAAATGTACTCTTCATGTCAATGGTTGGCATTCGCTTAACGTTTCTCGATGCAAACAACAAA
TTATGATATGTTTGAACCAAAAATGAAAATAAAATCTAATTTAAAATGATTTATAAGATTATTAA
ACCATTTAAAATGA
Found at i:12062092 original size:2 final size:2
Alignment explanation
Indices: 12062085--12062113 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
12062075 TGTCTATAGC
12062085 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
12062114 CATGTACACC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:12062295 original size:35 final size:35
Alignment explanation
Indices: 12062142--12062284 Score: 232
Period size: 35 Copynumber: 4.1 Consensus size: 35
12062132 CTTACTTAGC
* ***
12062142 TCATGTGTACTCCCTACACGCACAAGGCAATATCA
1 TCATGTGCACTCCCTACACGCACATTTCAATATCA
*
12062177 TCATGTGCATTCCCTACACGCACATTTCAATATCA
1 TCATGTGCACTCCCTACACGCACATTTCAATATCA
12062212 TCATGTGCACTCCCTACACGCACATTTCAATATCA
1 TCATGTGCACTCCCTACACGCACATTTCAATATCA
*
12062247 TCATGTGCACTCCCTACATGCACATTTCAATATCA
1 TCATGTGCACTCCCTACACGCACATTTCAATATCA
12062282 TCA
1 TCA
12062285 CACGTACTCC
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 101 1.00
ACGTcount: A:0.29, C:0.32, G:0.10, T:0.29
Consensus pattern (35 bp):
TCATGTGCACTCCCTACACGCACATTTCAATATCA
Found at i:12063557 original size:19 final size:19
Alignment explanation
Indices: 12063533--12063574 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
12063523 GGTGGTAAGG
*
12063533 TGAAAATAGCATGGGAGCA
1 TGAAAATAGCATGGGAGAA
* *
12063552 TGAAAATGGCGTGGGAGAA
1 TGAAAATAGCATGGGAGAA
12063571 TGAA
1 TGAA
12063575 GAAGAAGAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.40, C:0.07, G:0.36, T:0.17
Consensus pattern (19 bp):
TGAAAATAGCATGGGAGAA
Found at i:12066153 original size:31 final size:29
Alignment explanation
Indices: 12066118--12066181 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 29
12066108 CCATGTGAGT
*
12066118 AAAAGCAAGCAAGACAAAAATAAAAGCAAAA
1 AAAAGCAAGAAAGAC-AAAA-AAAAGCAAAA
* * *
12066149 AAAAGGAAGAAAGACACAAAAAAGCAAAG
1 AAAAGCAAGAAAGACAAAAAAAAGCAAAA
12066178 AAAA
1 AAAA
12066182 CAAAAGAGAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 13 0.45
30 3 0.10
31 13 0.45
ACGTcount: A:0.72, C:0.11, G:0.16, T:0.02
Consensus pattern (29 bp):
AAAAGCAAGAAAGACAAAAAAAAGCAAAA
Found at i:12066643 original size:34 final size:34
Alignment explanation
Indices: 12066580--12066657 Score: 86
Period size: 34 Copynumber: 2.3 Consensus size: 34
12066570 TTTGGCTGCT
* *
12066580 GAAAATTTGAGTTGTTTGTTGCCAATTTGTAC-A
1 GAAAATTGGAGCTGTTTGTTGCCAATTTGTACAA
** * *
12066613 GAAAAATTGGAGCTGTTTGTTGGTAGTTTGTGCAA
1 G-AAAATTGGAGCTGTTTGTTGCCAATTTGTACAA
12066648 GAAAATTGGA
1 GAAAATTGGA
12066658 CAGCTTTGTG
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
33 1 0.03
34 34 0.92
35 2 0.05
ACGTcount: A:0.29, C:0.06, G:0.27, T:0.37
Consensus pattern (34 bp):
GAAAATTGGAGCTGTTTGTTGCCAATTTGTACAA
Found at i:12066689 original size:24 final size:25
Alignment explanation
Indices: 12066649--12066695 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
12066639 TTTGTGCAAG
12066649 AAAATTGGACAGCTTTG-TGCTGCC
1 AAAATTGGACAGCTTTGTTGCTGCC
*
12066673 AAAATTGAGA-AGTTTTGTTGCTG
1 AAAATTG-GACAGCTTTGTTGCTG
12066696 GAAATTTGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.34
Consensus pattern (25 bp):
AAAATTGGACAGCTTTGTTGCTGCC
Found at i:12066836 original size:25 final size:22
Alignment explanation
Indices: 12066792--12066839 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
12066782 AAGAGGAAAG
12066792 GAAGAGAAGAAGCCACGGTGGT
1 GAAGAGAAGAAGCCACGGTGGT
*
12066814 GAAGAGAAGAAGCCACAGTGGT
1 GAAGAGAAGAAGCCACGGTGGT
12066836 GAAG
1 GAAG
12066840 GGAGTGACGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.40, C:0.12, G:0.40, T:0.08
Consensus pattern (22 bp):
GAAGAGAAGAAGCCACGGTGGT
Found at i:12066939 original size:24 final size:25
Alignment explanation
Indices: 12066907--12066965 Score: 84
Period size: 25 Copynumber: 2.4 Consensus size: 25
12066897 GAAAAAGAAA
12066907 AGAAAATAAAT-GGCATGACCCAAT
1 AGAAAATAAATGGGCATGACCCAAT
* *
12066931 AGAAAATAAGTGGGCATGGCCCAAT
1 AGAAAATAAATGGGCATGACCCAAT
*
12066956 AGGAAATAAA
1 AGAAAATAAA
12066966 AATAAATGGG
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
24 10 0.33
25 20 0.67
ACGTcount: A:0.49, C:0.14, G:0.22, T:0.15
Consensus pattern (25 bp):
AGAAAATAAATGGGCATGACCCAAT
Found at i:12070618 original size:11 final size:11
Alignment explanation
Indices: 12070581--12070610 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
12070571 CAGAACAAAA
12070581 TATTAATATTT
1 TATTAATATTT
12070592 TATTAATATTT
1 TATTAATATTT
12070603 TATTAATA
1 TATTAATA
12070611 AATTATTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
TATTAATATTT
Found at i:12070746 original size:14 final size:14
Alignment explanation
Indices: 12070727--12070758 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
12070717 TCGATAAAAA
12070727 TATTATTATTTTAT
1 TATTATTATTTTAT
*
12070741 TATTATTTTTTTAT
1 TATTATTATTTTAT
12070755 TATT
1 TATT
12070759 TTTTCATGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (14 bp):
TATTATTATTTTAT
Found at i:12070761 original size:11 final size:11
Alignment explanation
Indices: 12070729--12070762 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
12070719 GATAAAAATA
*
12070729 TTATTATTTTA
1 TTATTATTTTT
12070740 TTATTATTTTT
1 TTATTATTTTT
12070751 TTATTATTTTT
1 TTATTATTTTT
12070762 T
1 T
12070763 CATGTGCAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (11 bp):
TTATTATTTTT
Found at i:12075171 original size:171 final size:171
Alignment explanation
Indices: 12074784--12077602 Score: 2377
Period size: 170 Copynumber: 16.6 Consensus size: 171
12074774 TTCTCTTTGC
* * *** * * **
12074784 GTTTCCTAATGCAAACAACAAATTATGATCTGTTTGAATTGAAAATGAAAAAAAATTCAGTACAA
1 GTTTCCCAATGCAAACAACAAATTATGATCTGTTTTAACCAAAAATGGAAAAAAATTCAATTTAA
* * * * * * * *
12074849 AATTATTTATAAGATTATAAGACCAATTAAAGTGAGTAGCAAGGCTTT-TAAGGTATGAGTAACT
66 AATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACT
* * * * * *
12074913 ATAGATGGACTTCTCTTATCAATGGATGGCTTTCACTTCAC
131 ATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCAT
* *** * * * *
12074954 ATTTCCTGTTGCAAACAACAAACTATGATATGTTTTTACCAAAAATGGAAAAAAATTCATTTTAA
1 GTTTCCCAATGCAAACAACAAATTATGATCTGTTTTAACCAAAAATGGAAAAAAATTCAATTTAA
* * * * * *
12075019 AATCATTTATAAAATTA-AGAAACCATTTAAACCCAGTGATAAGGGTTTCAAAGGCATGAGTGAC
66 AATCATTTATAAGATTATA-AAACCATTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGAC
* *
12075083 TATAAATAGACTTTTTTTGTCAATTGATGGCTTTCGCTTCAT
130 TATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCAT
* * * **** ** * *
12075125 GTTTCCTAAAGCAAACATCAAATGGCAATCTGTTTTAAGAAAAAATGAGAAAAAACTTTCAACTT
1 GTTTCCCAATGCAAACAACAAATTATGATCTGTTTTAACCAAAAATG-GAAAAAA-ATTCAATTT
* * * *
12075190 AAAATCATTTATCTA-ATTATAAAACCATTTAAAGCGAGTAAGAAAGC-TT-AAAGCCA--A-T-
64 AAAATCATTTAT-AAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTG
* * * *
12075248 AATATAAATGGACTTTTCTTGTCAATGGATGGCTTTCTCTTCAC
128 ACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCAT
* * * *
12075292 GTTTCCCCATGAAAACAACAGATTATGATCTGTTTTAACC-AAAATTG-AAAAAATTCAATTTAA
1 GTTTCCCAATGCAAACAACAAATTATGATCTGTTTTAACCAAAAATGGAAAAAAATTCAATTTAA
* * * * * * *
12075355 AATCATTCATAAGATTATAAAACTACTTAAAGCCAGTAACAAAGCTTTCGAAGGCATTAGTGACT
66 AATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACT
* * * *
12075420 ATAAATAGACTTTTGTTGTCGATGGATGGGTTTCGATTCACT
131 ATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCA-T
* * * *
12075462 -TTTCCCATTGCAAACAACAAATTATGATATATTTTAACCAAAAAT-GAAAAAAATTCAATTCAA
1 GTTTCCCAATGCAAACAACAAATTATGATCTGTTTTAACCAAAAATGGAAAAAAATTCAATTTAA
** * * * * * *
12075525 AATCATTCGTGAAG-TTAAAAAACCACTTAAAGCAAGTAACGAGGCTTTCAAAGGCATTAATGAC
66 AATCATTTAT-AAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGAC
* *
12075589 TATAAA-AGGACTTTTCTTGTCAATGGATGGCTTTCGTTTCAC
130 TATAAATA-GACTTTTCTTGTCAATGGATGGCTTTCGCTTCAT
* ** * * *
12075631 ATTTCCTGATGCAAATAGA-AAATTATGATCTATTTTAATCAAAAAT-GAAAAAAATTCAATTTA
1 GTTTCCCAATGCAAACA-ACAAATTATGATCTGTTTTAACCAAAAATGGAAAAAAATTCAATTTA
* ** * * * *
12075694 AAATGATTTATAAGATTATAAAATTATTTAAAGCCAGTAACAAAGCTTTCAAAGGCACGAGTGAT
65 AAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGAC
* * *
12075759 TATAAATAGACTTTTCTTATCGATGGATGGCTTTCGCTTCAC
130 TATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCAT
*** * * * * ** *
12075801 GTTTCTTGATGCAACCATCAAATTGTGAT-TAGTTTAAACCAGGAATGAAAAAAATATTCAACTT
1 GTTTCCCAATGCAAACAACAAATTATGATCT-GTTTTAACCAAAAATGGAAAAAA-ATTCAA-TT
* * ** * *
12075865 AAAAAT-ATTTATAAGATTATAATATGATTTAAAGCGAGTAACAAGACTTTCGAAGGCATGAGTG
63 TAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTG
* * * * ** *
12075929 ACTATAGATGGACTTCT-TTATTGATGGATGGCTTT-GCTCCAT
128 ACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCAT
* * * * *
12075971 GTTTCTCATTGCAAACAACAAACTT-TGATCTATTTTAACCAAAAATGAAAAATAAATTCAATTC
1 GTTTCCCAATGCAAACAACAAA-TTATGATCTGTTTTAACCAAAAATGGAAAA-AAATTCAATTT
* ** *
12076035 AAAATCATTTATAGGATTATAAAACCATTTAAAATGAGTAATAAGGCTTTCAAAGGCATGAGTGA
64 AAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGA
* * * * *
12076100 CTATAAATGGACTCTTCCTATCAATGGATGGCTCTCGCTTCAT
129 CTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCAT
* * * * * * * * *
12076143 GTTTCTCGATGCAAACAAGAAATTATGATCTGTTTTAACAAAAAAATGTAGAAAAATTTATTTTG
1 GTTTCCCAATGCAAACAACAAATTATGATCTGTTTTAAC-CAAAAATGGAAAAAAATTCAATTTA
* * * * * * *
12076208 AAATCATATATAA-AGTTAAAAAACCACTTAACA-TGAGTAGCAAGGCTTTCGAAGGTATGAGTG
65 AAATCATTTATAAGA-TTATAAAACCATTTAA-AGCGAGTAACAAGGCTTTCAAAGGCATGAGTG
* * *
12076271 ACTACAAATAGACTTTTCTTGTTAATGGATAGG-TTTCGC-TCAAC
128 ACTATAAATAGACTTTTCTTGTCAATGGAT-GGCTTTCGCTTC-AT
* * * *
12076315 GTTTCCC-ACGAAAACAACAAATTATGATCTATTTTAACCAAAAATGAAACAAAAATTCAATTTA
1 GTTTCCCAATGCAAACAACAAATTATGATCTGTTTTAACCAAAAATGGAA-AAAAATTCAATTTA
* * *
12076379 AAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTCCGAAGGCATAAGTGAC
65 AAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGAC
* * **
12076444 TTTAGACGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCAT
130 TATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCAT
* * * * * *
12076486 GCTTCCCATTGCAAACAACAAAGTATGA-CTTGTTTTAACCAAAAGTAG-AAAAAATTTAATTTA
1 GTTTCCCAATGCAAACAACAAATTATGATC-TGTTTTAACCAAAAATGGAAAAAAATTCAATTTA
* * * * * * *
12076549 AAATCATTTATAA-ATTGATAAAACCACTGAAAGTGAATAATAAGGGTTTCAAAGGCATGAATGA
65 AAATCATTTATAAGATT-ATAAAACCATTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGA
* * * *
12076613 CTGTAAAT-GAACTTTTCTTGTCAATTGATGGGTTTTGCTTCAT
129 CTATAAATAG-ACTTTTCTTGTCAATGGATGGCTTTCGCTTCAT
* * * * * * * * *
12076656 ATTT-CCATAAGCAAACATCAAATTGTGATATGTTTTAACCAAAAATAAGAAAAAAAAATAAACT
1 GTTTCCCA-ATGCAAACAACAAATTATGATCTGTTTTAACCAAAAAT--GGAAAAAAATTCAATT
* * * * * * * *
12076720 TAAAGTCATTTAGAAGATTATCATAACCTTTTAAAGCAAGTAAGAAAGCTTTCGAAGGCATGAGT
63 TAAAATCATTTATAAGATTAT-AAAACCATTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGT
* * * **
12076785 GAATATAAATAAACTTTTCTTGTCAATCGG-TAGCTTTCGCTTTGT
127 GACTATAAATAGACTTTTCTTGTCAAT-GGATGGCTTTCGCTTCAT
** * * ** * *
12076830 GAATCCCAATGTAAATAGTAAATTATGATTTGTTTTAACCAAAAAT-GAAAACAATTCAATTTAA
1 GTTTCCCAATGCAAACAACAAATTATGATCTGTTTTAACCAAAAATGGAAAAAAATTCAATTTAA
* * *
12076894 AATCATTTATAAGATTATAAAACCATTTATAGCAAGTAACCAA-GCTTTCAAAGTCATGAGTGAC
66 AATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAA-CAAGGCTTTCAAAGGCATGAGTGAC
* * * * ** **
12076958 TAGAAATGGACTTTTCTTGCCGATCAATCACTTTCGCTTCAT
130 TATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCAT
* ** * * * *
12077000 GTTTCCCAATACAAACATTAAATTAAT-ATCAGTTTTGACCAAAAAT-GAAAAACAAATCAACTT
1 GTTTCCCAATGCAAACAACAAATT-ATGATCTGTTTTAACCAAAAATGGAAAAA-AATTCAATTT
* * * * * * **
12077063 AAAATCATTTA-AAAAGTTATAAAGCCTTTTAAAGCAAGTAAGAAAGCTTTTGAAGGCATGAGTG
64 AAAATCATTTATAAGA-TTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTG
*
12077127 ACTATAAATGGACTTTTCTTGTCAAT-GATGGCTTTCGCTTC-T
128 ACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCAT
* * * * * * *
12077169 ATTTCTCATTGGAAACAACAAATTATGATATGTTTTAACCAAAAAT---AAAAAATTGAATTCAA
1 GTTTCCCAATGCAAACAACAAATTATGATCTGTTTTAACCAAAAATGGAAAAAAATTCAATTTAA
* * * * ** * ** * **
12077231 AATCATTTATAAGGTTATTAAACCACTTAAAGTGAGTAATGAGGATTTTGAAGGCATTAACGACT
66 AATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACT
* * * *
12077296 ATAAATGGACTTTTCTTATCAATGGATGGCTTTCACTTCAC
131 ATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCAT
* * * * *
12077337 GTTTCCCATTGC-AATAATAAATTATGATATGTTTT-ACCAAAAATGAAAAAAAATTCAATTTAA
1 GTTTCCCAATGCAAACAACAAATTATGATCTGTTTTAACCAAAAATGGAAAAAAATTCAATTTAA
* ** * * * ** * *
12077400 AATCATTTATAA-AGTTATAAAACCACTTAAAGTAAGTAATATGACTTTTGAAGACATTAGTGAC
66 AATCATTTATAAGA-TTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGAC
* * *
12077464 TATAAATGGACTTTTCTTGTCAATGGATGAC-TTCTGCTTCAC
130 TATAAATAGACTTTTCTTGTCAATGGATGGCTTTC-GCTTCAT
* * * *
12077506 GTTTCCCAATGCAAACAATAAATTTTGATATGTTTTAACCAAAAAT-GAAAACAAATTCAACTTA
1 GTTTCCCAATGCAAACAACAAATTATGATCTGTTTTAACCAAAAATGGAAAA-AAATTCAATTTA
* *
12077570 AAATCATTGATAAGATTATAAAATCATTTAAAG
65 AAATCATTTATAAGATTATAAAACCATTTAAAG
12077603 TGAATCTTAA
Statistics
Matches: 2139, Mismatches: 433, Indels: 153
0.78 0.16 0.06
Matches are distributed among these distances:
162 1 0.00
163 46 0.02
164 7 0.00
165 6 0.00
166 91 0.04
167 108 0.05
168 16 0.01
169 238 0.11
170 762 0.36
171 426 0.20
172 246 0.12
173 87 0.04
174 101 0.05
175 4 0.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (171 bp):
GTTTCCCAATGCAAACAACAAATTATGATCTGTTTTAACCAAAAATGGAAAAAAATTCAATTTAA
AATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACT
ATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCAT
Found at i:12076087 original size:342 final size:343
Alignment explanation
Indices: 12074792--12077602 Score: 2197
Period size: 342 Copynumber: 8.3 Consensus size: 343
12074782 GCGTTTCCTA
* *** * *
12074792 ATGCAAACAACAAATTATGATCTGTTTGAATTGAAAATGAAAAAAA-ATTC-A-GTACAAAATTA
1 ATGCAAACAACAAATTATGATCTGTTTTAACAAAAAATGAAAAAAATATTCAACTTA-AAAATCA
* * * * * * * *
12074854 TTTATAAGATTATAAGACCAATTAAAGTGAGTAGCAAGGCTTT-TAAGGTATGAGTAACTATAGA
65 TTTATAAGATTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAA
* * * * ** *
12074918 TGGACTTCTCTTATCAATGGATGGCTTTCACTTCACAT-TTCCTGTTGCAAACAACAAACTATGA
130 TGGACTTTTCTTGTCAATGGATGGCTTTCGC-TCACATGTTTCTCATGCAAACAACAAATTATGA
* * * * *
12074982 TATGTTTTTACCAAAAATGGAAAAAAATTCATTTTAAAATCATTTATAAAATTA-AGAAACCATT
194 TCTATTTTAACCAAAAAT-GAAAAAAATTCAATTTAAAATCATTTATAAGATTATA-AAACCATT
* * * * * *
12075046 TAAACCCAGTGATAAGGGTTTCAAAGGCATGAGTGACTATAAATAGACTTTTTTTGTCAATTGAT
257 TAAAGCCAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGAT
* *
12075111 GGCTTTCGCTTCATGTTTC-CTA
322 GGCTTTCGCTTCACGTTTCTC-G
* * **** *
12075133 AAGCAAACATCAAATGGCAATCTGTTTTAAGAAAAAATGAGAAAAAACT-TTCAACTT-AAAATC
1 ATGCAAACAACAAATTATGATCTGTTTTAACAAAAAATGA-AAAAAA-TATTCAACTTAAAAATC
* * * * * *
12075196 ATTTATCTA-ATTATAAAACCATTTAAAGCGAGTAAGAAAGC-TT-AAAGCCA--A-T-AATATA
64 ATTTAT-AAGATTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATA
* * * *
12075254 AATGGACTTTTCTTGTCAATGGATGGCTTTCTCTTCAC--GTTTCCCCATGAAAACAACAGATTA
128 AATGGACTTTTCTTGTCAATGGATGGCTTTCGC-TCACATGTTT-CTCATGCAAACAACAAATTA
* * * * *
12075317 TGATCTGTTTTAACCAAAATTG-AAAAAATTCAATTTAAAATCATTCATAAGATTATAAAACTAC
191 TGATCTATTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAGATTATAAAACCAT
* * * * *
12075381 TTAAAGCCAGTAACAAAGCTTTCGAAGGCATTAGTGACTATAAATAGACTTTTGTTGTCGATGGA
256 TTAAAGCCAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGA
* * * *
12075446 TGGGTTTCGATTCACTTTTC-CC
321 TGGCTTTCGCTTCACGTTTCTCG
* * * *
12075468 ATTGCAAACAACAAATTATGATATATTTTAACCAAAAATG-AAAAAA-ATTCAA-TTCAAAATCA
1 A-TGCAAACAACAAATTATGATCTGTTTTAACAAAAAATGAAAAAAATATTCAACTTAAAAATCA
** * * * * *
12075530 TTCGTGAAG-TTAAAAAACCACTTAAAGCAAGTAACGAGGCTTTCAAAGGCATTAATGACTATAA
65 TTTAT-AAGATTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAA
* * * * *
12075594 AAGGACTTTTCTTGTCAATGGATGGCTTTCGTTTCACAT-TTCCTGATGCAAATAGA-AAATTAT
129 ATGGACTTTTCTTGTCAATGGATGGCTTTCG-CTCACATGTTTCTCATGCAAACA-ACAAATTAT
* * **
12075657 GATCTATTTTAATCAAAAATGAAAAAAATTCAATTTAAAATGATTTATAAGATTATAAAATTATT
192 GATCTATTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAGATTATAAAACCATT
* * * * *
12075722 TAAAGCCAGTAACAAAGCTTTCAAAGGCACGAGTGATTATAAATAGACTTTTCTTATCGATGGAT
257 TAAAGCCAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGAT
*
12075787 GGCTTTCGCTTCACGTTTCTTG
322 GGCTTTCGCTTCACGTTTCTCG
* * * * * **
12075809 ATGCAACCATCAAATTGTGAT-TAGTTTAAACCAGGAATGAAAAAAATATTCAACTTAAAAAT-A
1 ATGCAAACAACAAATTATGATCT-GTTTTAACAAAAAATGAAAAAAATATTCAACTTAAAAATCA
* ** * * * *
12075872 TTTATAAGATTATAATATGATTTAAAGCGAGTAACAAGACTTTCGAAGGCATGAGTGACTATAGA
65 TTTATAAGATTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAA
* * **
12075937 TGGACTTCT-TTATTGATGGATGGCTTT-GCTC-CATGTTTCTCATTGCAAACAACAAACTT-TG
130 TGGACTTTTCTTGTCAATGGATGGCTTTCGCTCACATGTTTCTCA-TGCAAACAACAAA-TTATG
* *
12075998 ATCTATTTTAACCAAAAATGAAAAATAAATTCAATTCAAAATCATTTATAGGATTATAAAACCAT
193 ATCTATTTTAACCAAAAATG-AAAA-AAATTCAATTTAAAATCATTTATAAGATTATAAAACCAT
*** * * * * *
12076063 TTAAAATGAGTAATAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTCTTCCTATCAATGGA
256 TTAAAGCCAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGA
* *
12076128 TGGCTCTCGCTTCATGTTTCTCG
321 TGGCTTTCGCTTCACGTTTCTCG
* * * **
12076151 ATGCAAACAAGAAATTATGATCTGTTTTAACAAAAAAATGTAGAAAAAT-TT--ATTTTGAAATC
1 ATGCAAACAACAAATTATGATCTGTTTTAAC-AAAAAATG-AAAAAAATATTCAACTTAAAAATC
* * * * * * *
12076213 ATATATAA-AGTTAAAAAACCACTTAACA-TGAGTAGCAAGGCTTTCGAAGGTATGAGTGACTAC
64 ATTTATAAGA-TTATAAAACCACTTAA-AGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTAT
* * * * * *
12076276 AAATAGACTTTTCTTGTTAATGGATAGG-TTTCGCTCA-ACGTTTCCCACGAAAACAACAAATTA
127 AAATGGACTTTTCTTGTCAATGGAT-GGCTTTCGCTCACATGTTTCTCATGCAAACAACAAATTA
12076339 TGATCTATTTTAACCAAAAATGAAACAAAAATTCAATTTAAAATCATTTATAAGATTATAAAACC
191 TGATCTATTTTAACCAAAAATG-AA-AAAAATTCAATTTAAAATCATTTATAAGATTATAAAACC
* * * * * * **
12076404 ATTTAAAGCGAGTAACAAGGCTTCCGAAGGCATAAGTGACTTTAGACGGACTTTTCTTGTCAATG
254 ATTTAAAGCCAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATG
* * *
12076469 GATGGCTTTCGCTTCATGCTTC-CC
319 GATGGCTTTCGCTTCACGTTTCTCG
* * * *
12076493 ATTGCAAACAACAAAGTATGA-CTTGTTTTAACCAAAAGT-AGAAAAAAT-TT-AA-TTTAAAAT
1 A-TGCAAACAACAAATTATGATC-TGTTTTAACAAAAAATGA-AAAAAATATTCAACTTAAAAAT
* * * * * * *
12076553 CATTTATAA-ATTGATAAAACCACTGAAAGTGAATAATAAGGGTTTCAAAGGCATGAATGACTGT
63 CATTTATAAGATT-ATAAAACCACTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTAT
* * * * * * *
12076617 AAATGAACTTTTCTTGTCAATTGATGGGTTTTGCT-TCATATTTC-CATAAGCAAACATCAAATT
127 AAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTCACATGTTTCTCAT--GCAAACAACAAATT
* * * * * * * * *
12076680 GTGATATGTTTTAACCAAAAATAAGAAAAAAAAATAAACTTAAAGTCATTTAGAAGATTATCATA
190 ATGATCTATTTTAACCAAAAAT--G-AAAAAAATTCAATTTAAAATCATTTATAAGATTAT-AAA
* * * * * * *
12076745 ACCTTTTAAAGCAAGTAAGAAAGCTTTCGAAGGCATGAGTGAATATAAATAAACTTTTCTTGTCA
251 ACCATTTAAAGCCAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCA
* *** ** * *
12076810 ATCGG-TAGCTTTCGCTTTGTGAATCCCA
316 AT-GGATGGCTTTCGCTTCACGTTTCTCG
* * ** * * * *
12076838 ATGTAAATAGTAAATTATGATTTGTTTTAACCAAAAATG-AAAACA-ATTCAA-TTTAAAATCAT
1 ATGCAAACAACAAATTATGATCTGTTTTAACAAAAAATGAAAAAAATATTCAACTTAAAAATCAT
* * * * *
12076900 TTATAAGATTATAAAACCATTTATAGCAAGTAACCAA-GCTTTCAAAGTCATGAGTGACTAGAAA
66 TTATAAGATTATAAAACCACTTAAAGCGAGTAA-CAAGGCTTTCAAAGGCATGAGTGACTATAAA
* * ** ** * * * **
12076964 TGGACTTTTCTTGCCGATCAATCACTTTCGCT-TCATGTTTCCCAATACAAACATTAAATTAAT-
130 TGGACTTTTCTTGTCAATGGATGGCTTTCGCTCACATGTTTCTC-ATGCAAACAACAAATT-ATG
* * * * * *
12077027 ATC-AGTTTTGACCAAAAATGAAAAACAAATCAACTTAAAATCATTTA-AAAAGTTATAAAGCCT
193 ATCTA-TTTTAACCAAAAATGAAAAA-AATTCAATTTAAAATCATTTATAAGA-TTATAAAACCA
* * * ** *
12077090 TTTAAAGCAAGTAAGAAAGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAAT-G
255 TTTAAAGCCAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGG
12077154 ATGGCTTTCGCTTCTA--TTTCTC-
320 ATGGCTTTCGCTTC-ACGTTTCTCG
* * * * *
12077176 ATTGGAAACAACAAATTATGATATGTTTTAACCAAAAAT---AAAAA-ATTGAA-TTCAAAATCA
1 A-TGCAAACAACAAATTATGATCTGTTTTAACAAAAAATGAAAAAAATATTCAACTTAAAAATCA
* * * ** * ** * **
12077236 TTTATAAGGTTATTAAACCACTTAAAGTGAGTAATGAGGATTTTGAAGGCATTAACGACTATAAA
65 TTTATAAGATTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAA
* * * * *
12077301 TGGACTTTTCTTATCAATGGATGGCTTTCACTTCAC--GTTTCCCATTGC-AATAATAAATTATG
130 TGGACTTTTCTTGTCAATGGATGGCTTTCGC-TCACATGTTTCTCA-TGCAAACAACAAATTATG
* * *
12077363 ATATGTTTT-ACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTATAA-AGTTATAAAACCAC
193 ATCTATTTTAACCAAAAATG-AAAAAAATTCAATTTAAAATCATTTATAAGA-TTATAAAACCAT
** * * * ** * * *
12077426 TTAAAGTAAGTAATATGACTTTTGAAGACATTAGTGACTATAAATGGACTTTTCTTGTCAATGGA
256 TTAAAGCCAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGA
* * *
12077491 TGAC-TTCTGCTTCACGTTTCCCA
321 TGGCTTTC-GCTTCACGTTTCTCG
* * * * *
12077514 ATGCAAACAATAAATTTTGATATGTTTTAACCAAAAATGAAAACAA-ATTCAACTT-AAAATCAT
1 ATGCAAACAACAAATTATGATCTGTTTTAACAAAAAATGAAAAAAATATTCAACTTAAAAATCAT
* * *
12077577 TGATAAGATTATAAAATCATTTAAAG
66 TTATAAGATTATAAAACCACTTAAAG
12077603 TGAATCTTAA
Statistics
Matches: 2000, Mismatches: 375, Indels: 191
0.78 0.15 0.07
Matches are distributed among these distances:
332 2 0.00
333 41 0.02
334 8 0.00
335 108 0.05
336 169 0.08
337 141 0.07
338 78 0.04
339 118 0.06
340 236 0.12
341 237 0.12
342 328 0.16
343 274 0.14
344 246 0.12
345 12 0.01
346 2 0.00
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.33
Consensus pattern (343 bp):
ATGCAAACAACAAATTATGATCTGTTTTAACAAAAAATGAAAAAAATATTCAACTTAAAAATCAT
TTATAAGATTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAAT
GGACTTTTCTTGTCAATGGATGGCTTTCGCTCACATGTTTCTCATGCAAACAACAAATTATGATC
TATTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAGATTATAAAACCATTTAAA
GCCAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCT
TTCGCTTCACGTTTCTCG
Found at i:12076479 original size:685 final size:671
Alignment explanation
Indices: 12074784--12077592 Score: 2319
Period size: 685 Copynumber: 4.1 Consensus size: 671
12074774 TTCTCTTTGC
* * * * *** * **
12074784 GTTTCCTAATGCAAACAACAAATTATGATCTGTTTGAATTGAAAATGAAAAAAAATTCAGTACAA
1 GTTTCCCAATGCAAACAAGAAATTATGATATGTTTTAACAAAAAATG--AAAAAATTCAATTTAA
* * * * * * *
12074849 AATTATTTATAAGATTATAAGACCAATTAA-AGTGAGTAGCAAGGCTTTTAAGGTATGAGTAACT
64 AATCA-TTATAAG-TTAAAAAACCACTTAACA--GAGTAACAAGGCTTTCAAGGTATGAGTGACT
* * * * * * * *** * *
12074913 ATAGATGGACTTCTCTTATCAATGGAT-GGCTTTCACTTCACATTTCCTGTTGCAAACAACAAAC
125 ACAAATAGACTTTTCTTGTCAATGGATAGG-TTTCGC-TCACGTTTCC-CAAGAAAACAACAAAT
* * * * *
12074977 TATGATATGTTTTTACCAAAAATGGAAAAAAATTCATTTTAAAATCATTTATAAAATTA-AGAAA
187 TATGATCTATTTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTATAAAATTATA-AAA
* * * * * *
12075041 CCATTTAAACCCAGTGATAAGGGTTTCAAAGGCATGAGTGACTATAAATAGACTTTTTTTGTCAA
251 CCATTTAAAGCCAGTAACAAAGCTTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAA
* ** * **** **
12075106 TTGATGGCTTTCGCTTCATGTTTC-CTAAAGCAAACATCAAATGGCAATCTGTTTTAAGAAAAAA
316 TGGATGGCTTTCGCTTCATGTTTCTC-ATTGCAAACAACAAATTATGAT-TGTTTT-A-ACCAAA
* *
12075170 TGAGAAAAAACTTTCAACTTAAAATCATTTATCTAATTATAAAACCATTTAAAGCGAGTAAGAA-
377 TGAGAAAAAA-TTTCAA-TTAAAATCATTTAT-AAATTATAAAACCACTTAAAGCGAGTAAGAAG
* * *
12075234 AGC-TT-AAA-GC--CAAT-AATATAAATGGACTTTTCTTGTCAATGGATGGCTTT-CTCTTCAC
439 A-CTTTCAAAGGCATGAATGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTGCTC--CAC
* * * *
12075292 GTTTCCCCA-TGAAAACAACAGATTATGATCTGTTTTAACCAAAATTG--AAAAAATTCAATTTA
501 GTTT-CCCATTGCAAACAACAAATTATGATATGTTTTAACCAAAAATGAAAAAAAATTCAATTTA
* * * * *
12075354 AAATCATTCATAAGATTATAAAACTACTTAAAGCCAGTAACAAAGCTTTCGAAGGCATTAGTGAC
565 AAATCATTTATAAGATTATAAAACCACTTAAAGCAAGTAATAAAGCTTTCGAAGGCATGAGTGAC
* * * *
12075419 TATAAATAGACTTTTGTTGTCGATGGATGGGTTTCGATTCACT
630 TATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCA-T
* * * * *
12075462 -TTTCCCATTGCAAACAACAAATTATGATATATTTTAACCAAAAATGAAAAAAATTCAATTCAAA
1 GTTTCCCAATGCAAACAAGAAATTATGATATGTTTTAACAAAAAATG-AAAAAATTCAATTTAAA
* * * * *
12075526 ATCATTCGTGAAGTTAAAAAACCACTTAA-AGCAAGTAACGAGGCTTTCAAAGGCATTAATGACT
65 ATCATT-AT-AAGTTAAAAAACCACTTAACAG--AGTAACAAGGCTTTC-AAGGTATGAGTGACT
* * * * * * *
12075590 ATAAA-AGGACTTTTCTTGTCAATGGAT-GGCTTTCGTTTCACATTTCCTGATGCAAATAGA-AA
125 ACAAATA-GACTTTTCTTGTCAATGGATAGG-TTTCG-CTCACGTTTCC-CAAGAAAACA-ACAA
* * *
12075652 ATTATGATCTATTTTAATCAAAAATG-AAAAAAATTCAATTTAAAATGATTTATAAGATTATAAA
185 ATTATGATCTATTTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTATAAAATTATAAA
** * * * *
12075716 ATTATTTAAAGCCAGTAACAAAGCTTTCAAAGGCACGAGTGATTATAAATAGACTTTTCTTATCG
250 ACCATTTAAAGCCAGTAACAAAGCTTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCA
* * * * * *
12075781 ATGGATGGCTTTCGCTTCACGTTTCTTGA-TGCAACCATCAAATTGTGATTAGTTTAAACCAGGA
315 ATGGATGGCTTTCGCTTCATGTTTC-TCATTGCAAACAACAAATTATGATT-GTTTTAACCA--A
* ** * *
12075845 ATGA-AAAAAATATTCAACTTAAAAAT-ATTTATAAGATTATAATATGATTTAAAGCGAGTAACA
376 ATGAGAAAAAAT-TTCAA-TT-AAAATCATTTATAA-ATTATAAAACCACTTAAAGCGAGTAAGA
* * * * ** *
12075908 AGACTTTCGAAGGCATGAGTGACTATAGATGGACTTCT-TTATTGATGGATGGCTTTGCTCCATG
437 AGACTTTCAAAGGCATGAATGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTGCTCCACG
* * * *
12075972 TTTCTCATTGCAAACAACAAACTT-TGATCTATTTTAACCAAAAATGAAAAATAAATTCAATTCA
502 TTTCCCATTGCAAACAACAAA-TTATGATATGTTTTAACCAAAAATGAAAAA-AAATTCAATTTA
* * *** * *
12076036 AAATCATTTATAGGATTATAAAACCATTTAAAATGAGTAATAAGGCTTTCAAAGGCATGAGTGAC
565 AAATCATTTATAAGATTATAAAACCACTTAAAGCAAGTAATAAAGCTTTCGAAGGCATGAGTGAC
* * * * *
12076101 TATAAATGGACTCTTCCTATCAATGGATGGCTCTCGCTTCAT
630 TATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCAT
* * * * * *
12076143 GTTTCTCGATGCAAACAAGAAATTATGATCTGTTTTAACAAAAAAATGTAGAAAAATTTATTTTG
1 GTTTCCCAATGCAAACAAGAAATTATGATATGTTTTAAC-AAAAAATG-A-AAAAATTCAATTTA
*
12076208 AAATCATATATAAAGTTAAAAAACCACTTAACATGAGTAGCAAGGCTTTCGAAGGTATGAGTGAC
63 AAATCAT-TAT-AAGTTAAAAAACCACTTAACA-GAGTAACAAGGCTTTC-AAGGTATGAGTGAC
* *
12076273 TACAAATAGACTTTTCTTGTTAATGGATAGGTTTCGCTCAACGTTTCCCACGAAAACAACAAATT
124 TACAAATAGACTTTTCTTGTCAATGGATAGGTTTCGCTC-ACGTTTCCCAAGAAAACAACAAATT
*
12076338 ATGATCTATTTTAACCAAAAATGAAACAAAAATTCAATTTAAAATCATTTATAAGATTATAAAAC
188 ATGATCTATTTTAACCAAAAATGAAA-AAAAATTCAATTTAAAATCATTTATAAAATTATAAAAC
* * * * * * * **
12076403 CATTTAAAGCGAGTAACAAGGCTTCCGAAGGCATAAGTGACTTTAGACGGACTTTTCTTGTCAAT
252 CATTTAAAGCCAGTAACAAAGCTTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAAT
* * * *
12076468 GGATGGCTTTCGCTTCATGCTTCCCATTGCAAACAACAAAGTATGACTTGTTTTAACCAAAAGTA
317 GGATGGCTTTCGCTTCATGTTTCTCATTGCAAACAACAAATTATGA-TTGTTTTAACCAAATG-A
* * * * **
12076533 GAAAAAATTT-AATTTAAAATCATTTATAAATTGATAAAACCACTGAAAGTGAATAATAAGGGTT
380 GAAAAAATTTCAA-TTAAAATCATTTATAAATT-ATAAAACCACTTAAAGCGAGTAAGAAGACTT
* * * * * * **
12076597 TCAAAGGCATGAATGACTGTAAATGAACTTTTCTTGTCAATTGATGGGTTTTGCTTCATATTT-C
443 TCAAAGGCATGAATGACTATAAATGGACTTTTCTTATCAATGGAT-GGCTTTGCTCCACGTTTCC
* * * * * * *
12076661 CATAAGCAAACATCAAATTGTGATATGTTTTAACCAAAAATAAGAAAAAAAAATAAACTTAAAGT
507 CAT-TGCAAACAACAAATTATGATATGTTTTAACCAAAAAT--GAAAAAAAATTCAATTTAAAAT
* * ** * *
12076726 CATTTAGAAGATTATCATAACCTTTTAAAGCAAGTAAGAAAGCTTTCGAAGGCATGAGTGAATAT
569 CATTTATAAGATTAT-AAAACCACTTAAAGCAAGTAATAAAGCTTTCGAAGGCATGAGTGACTAT
* * **
12076791 AAATAAACTTTTCTTGTCAATCGG-TAGCTTTCGCTTTGT
633 AAATAGACTTTTCTTGTCAAT-GGATGGCTTTCGCTTCAT
** * * * *
12076830 GAATCCCAATGTAAA-TAGTAAATTATGATTTGTTTTAACCAAAAATGAAAACAATTCAATTTAA
1 GTTTCCCAATGCAAACAAG-AAATTATGATATGTTTTAACAAAAAATGAAAA-AATTCAATTTAA
* * *
12076894 AATCATTTATAAGATTATAAAACCATTTATAGCA-AGTAACCAA-GCTTTCAAAGTCATGAGTGA
64 AATCA-TTATAAG-TTAAAAAACCACTTA-A-CAGAGTAA-CAAGGCTTTCAAGGT-ATGAGTGA
* * * * ** * * * **
12076957 CTAGAAATGGACTTTTCTTGCCGATCAATCA-CTTTCGCTTCATGTTTCCCAATACAAACATTAA
123 CTACAAATAGACTTTTCTTGTCAATGGAT-AGGTTTCGC-TCACGTTTCCCAAGA-AAACAACAA
* *
12077021 ATTAAT-ATC-AGTTTTGACCAAAAATGAAAAACAAA-TCAACTTAAAATCATTTA-AAAAGTTA
185 ATT-ATGATCTA-TTTTAACCAAAAATGAAAAA-AAATTCAATTTAAAATCATTTATAAAA-TTA
* * * * ** *
12077082 TAAAGCCTTTTAAAGCAAGTAAGAAAGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTT
246 TAAAACCATTTAAAGCCAGTAACAAAGCTTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTT
* *
12077147 GTCAAT-GATGGCTTTCGCTTC-TATTTCTCATTGGAAACAACAAATTATGATATGTTTTAACCA
311 GTCAATGGATGGCTTTCGCTTCATGTTTCTCATTGCAAACAACAAATTATGAT-TGTTTTAACCA
* * * * * *
12077210 AA-AATAAAAAA-TTGAATTCAAAATCATTTATAAGGTTATTAAACCACTTAAAGTGAGTAATGA
375 AATGAGAAAAAATTTCAATT-AAAATCATTTATAA-ATTATAAAACCACTTAAAGCGAGTAA-GA
* ** * * * *
12077273 GGA-TTTTGAAGGCATTAACGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCACTTCAC
437 AGACTTTCAAAGGCATGAATGACTATAAATGGACTTTTCTTATCAATGGATGGCTTT-GCTCCAC
* *
12077337 GTTTCCCATTGC-AATAATAAATTATGATATGTTTT-ACCAAAAATGAAAAAAAATTCAATTTAA
501 GTTTCCCATTGCAAACAACAAATTATGATATGTTTTAACCAAAAATGAAAAAAAATTCAATTTAA
* * * * *
12077400 AATCATTTATAA-AGTTATAAAACCACTTAAAGTAAGTAAT-ATGACTTTTGAAGACATTAGTGA
566 AATCATTTATAAGA-TTATAAAACCACTTAAAGCAAGTAATAAAG-CTTTCGAAGGCATGAGTGA
* * *
12077463 CTATAAATGGACTTTTCTTGTCAATGGATGAC-TTCTGCTTCAC
629 CTATAAATAGACTTTTCTTGTCAATGGATGGCTTTC-GCTTCAT
* * * *
12077506 GTTTCCCAATGCAAACAATAAATTTTGATATGTTTTAACCAAAAATGAAAACAAATTCAACTTAA
1 GTTTCCCAATGCAAACAAGAAATTATGATATGTTTTAACAAAAAATG-AAA-AAATTCAATTTAA
*
12077571 AATCATTGATAAGATTATAAAA
64 AATCATT-ATAAG-TTAAAAAA
12077593 TCATTTAAAG
Statistics
Matches: 1731, Mismatches: 314, Indels: 173
0.78 0.14 0.08
Matches are distributed among these distances:
674 5 0.00
675 57 0.03
676 289 0.17
677 191 0.11
678 7 0.00
679 46 0.03
680 47 0.03
681 113 0.07
682 147 0.08
683 142 0.08
684 144 0.08
685 358 0.21
686 77 0.04
687 106 0.06
688 2 0.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (671 bp):
GTTTCCCAATGCAAACAAGAAATTATGATATGTTTTAACAAAAAATGAAAAAATTCAATTTAAAA
TCATTATAAGTTAAAAAACCACTTAACAGAGTAACAAGGCTTTCAAGGTATGAGTGACTACAAAT
AGACTTTTCTTGTCAATGGATAGGTTTCGCTCACGTTTCCCAAGAAAACAACAAATTATGATCTA
TTTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTATAAAATTATAAAACCATTTAAAG
CCAGTAACAAAGCTTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTT
TCGCTTCATGTTTCTCATTGCAAACAACAAATTATGATTGTTTTAACCAAATGAGAAAAAATTTC
AATTAAAATCATTTATAAATTATAAAACCACTTAAAGCGAGTAAGAAGACTTTCAAAGGCATGAA
TGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTGCTCCACGTTTCCCATTGCAAACAACA
AATTATGATATGTTTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTATAAGATTATAA
AACCACTTAAAGCAAGTAATAAAGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTC
AATGGATGGCTTTCGCTTCAT
Found at i:12079284 original size:8 final size:8
Alignment explanation
Indices: 12079273--12079297 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
12079263 AAATATAACC
12079273 CATAAATT
1 CATAAATT
12079281 CATAAATT
1 CATAAATT
12079289 CATAAATT
1 CATAAATT
12079297 C
1 C
12079298 CAATAGTTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.36
Consensus pattern (8 bp):
CATAAATT
Found at i:12080958 original size:171 final size:169
Alignment explanation
Indices: 12080309--12082823 Score: 1456
Period size: 168 Copynumber: 14.9 Consensus size: 169
12080299 TGTAAGCACC
* * ** *
12080309 AAATTGTGATATGTTTTAATGAAAAATGAAAAAATATTCAACTTAAAATCATTTATAAGATTATA
1 AAATTATGATCTGTTTTAACCAAAAA-GAAAAAA-ATTCAACTCAAAATCATTTATAAGATTATA
* * * * * * * * * *
12080374 AAACCATTTAAAGCGAGTAACAA-G-TTTGTCAAAAGTATGAGTG---ATAGATGTACTTTCCTT
64 AAACCACTTAAAGTGAATAACAAGGCTTT-T-GAAGGCATAAGTGACTATAAATGGACTTTTCTT
* * * *
12080434 GTCAATGGATGGCTTTCACTTCACATTT-CTCATTGTAAACAAC
127 GTCAATGGATGGCTTTCGCTTCACATTTCCTGA-TGCAAACAAT
* * *
12080477 AAATTATGATATGTTTGAACCAAAAATGAAAACAAATTCAATTCAAAATCA-TTATAA-AGTTAT
1 AAATTATGATCTGTTTTAACCAAAAA-GAAAA-AAATTCAACTCAAAATCATTTATAAGA-TTAT
* * * *
12080540 AAAACCACTTAAAGTGAGTAACGAA-GCTTTCGAAGGCATTAGTGACTATAAATGGAATGTTT-T
63 AAAACCACTTAAAGTGAATAAC-AAGGCTTTTGAAGGCATAAGTGACTATAAATGGACT-TTTCT
** *
12080603 TGTCAATGGATGGCTTTCGCTTCATGTTTCAC-CATGCAAAC-AT
126 TGTCAATGGATGGCTTTCGCTTCACATTTC-CTGATGCAAACAAT
* * *** * ** * *
12080646 CCAATTATGAT-TTTTTTAAATTATAAGTTGAAAAATTCAATTTAAAATCATTTATAA-AGTTAT
1 -AAATTATGATCTGTTTTAACCAAAAAG-AAAAAAATTCAACTCAAAATCATTTATAAGA-TTAT
* * ** * *
12080709 -AAATCACTTAAAGCT-AGTAACAACAC-TTTCACAAGCATAAGTGACTATAAATGGACTTTTCT
63 AAAACCACTTAAAG-TGAATAACAAGGCTTTTGA-AGGCATAAGTGACTATAAATGGACTTTTCT
* * * *
12080771 TGTCAATGTATGGCTTTCGCTTTATATTTCCTGATGCAAACAAG
126 TGTCAATGGATGGCTTTCGCTTCACATTTCCTGATGCAAACAAT
* * * * * *
12080815 AACTTATGATCTATTTTAGCCAAAAACAACAAACAATTCAACTCAAAAGCATTTATAAGACTATA
1 AAATTATGATCTGTTTTAACCAAAAAGAA-AAA-AATTCAACTCAAAATCATTTATAAGATTATA
* * ** * * *
12080880 AAACCATTTAAAATGAATAAGTAGGCTTTTGAAGGCATGAGTGACTATAAACGGACTTTTCTTAT
64 AAACCACTTAAAGTGAATAACAAGGCTTTTGAAGGCATAAGTGACTATAAATGGACTTTTCTTGT
* * * **
12080945 CAATGGGTGGCTTTCACATCACATTTTTTGATGCAAA-ACAT
129 CAATGGATGGCTTTCGCTTCACATTTCCTGATGCAAACA-AT
** * * *
12080986 CAAATTATGATCTGTCCTAACCAAAAATAGAAATAAATTCAATTTC-AAATTATTTATAA-AGTT
1 -AAATTATGATCTGTTTTAACC-AAAA-AGAAAAAAATTCAA-CTCAAAATCATTTATAAGA-TT
** * * *
12081049 ATAAAAGTACTTAAAGTGAGA-AACAAGGCTTTTGAAGGCATGAGTGACTATACATTGACTTTTC
61 ATAAAACCACTTAAAGTGA-ATAACAAGGCTTTTGAAGGCATAAGTGACTATAAATGGACTTTTC
* * * * * * *
12081113 ATGTCAATGGATGACTTTTGCTTCACGTTTTCTGATGCAAATATT
125 TTGTCAATGGATGGCTTTCGCTTCACATTTCCTGATGCAAACAAT
* * * *
12081158 AAATTATGATTTGATTTAACCAAAAATGAAAAAAAATTCAACTTAAAATCATTTATAACATTATA
1 AAATTATGATCTGTTTTAACCAAAAA-G-AAAAAAATTCAACTCAAAATCATTTATAAGATTATA
* * * * * * * * * *
12081223 AAACCATTTAATGTGAGTAAGAAGTCTTTGGAATG-AGTAAGTG---AT-AGTGGACTTTTCCTA
64 AAACCACTTAAAGTGAATAACAAGGCTTTTGAAGGCA-TAAGTGACTATAAATGGACTTTTCTTG
** * * * * * *
12081283 TCAACAGATAGCCTTCGCCTCACGTTT-CTCATTGCTAACAAT
128 TCAATGGATGGCTTTCGCTTCACATTTCCTGA-TGCAAACAAT
* * * * *
12081325 AATTTATAATATGTTTTAACCAAAAAAGAAAACAAATTCAATTCAAAATCATATATAA-AGTTAT
1 AAATTATGATCTGTTTTAACC-AAAAAGAAAA-AAATTCAACTCAAAATCATTTATAAGA-TTAT
* * * * ** * *
12081389 CAAACAACTTAAAGCGAGTAATGAGGCTTTCGAAGGCATTAGTGACTATAAATGGACTTTTCTTG
63 AAAACCACTTAAAGTGAATAACAAGGCTTTTGAAGGCATAAGTGACTATAAATGGACTTTTCTTG
* * * *
12081454 TCAATGGATGACTTTCGCTTTACGTTTCCTGATGTAAAC-AT
128 TCAATGGATGGCTTTCGCTTCACATTTCCTGATGCAAACAAT
* * * * *
12081495 CTAATTATGATTTTTTTTAACCAAAATTGAAAAAAATTCAATTTC-AAATCATTTATGAAG-TTA
1 -AAATTATGATCTGTTTTAACCAAAA-AGAAAAAAATTCAA-CTCAAAATCATTTAT-AAGATTA
* * * ** * ** * *
12081558 TAAAATCACTTAAAGCGACTAACAACACTTTCGCGGGCATAAGTGATTATAAATAGACTTTTCTT
62 TAAAACCACTTAAAGTGAATAACAAGGCTTTTGAAGGCATAAGTGACTATAAATGGACTTTTCTT
* * * ** * *
12081623 GTCAATGTATGGCTTTCGTTTTACATTTCCCAATGTAAACAAG
127 GTCAATGGATGGCTTTCGCTTCACATTTCCTGATGCAAACAAT
* * * * * * * *
12081666 AACTTATGATCTGTTTGAACCAAAAATGAAAAAAAATCACCTTAAAAACATTTCTAAGACTATAA
1 AAATTATGATCTGTTTTAACCAAAAA-GAAAAAAATTCAACTCAAAATCATTTATAAGATTATAA
** * * * * ** * *
12081731 AACCTTTTAAAATGAATAACTAGGCTTTTGAAGACATGAGTGACTATAACCGAACTTTTCTTATC
65 AACCACTTAAAGTGAATAACAAGGCTTTTGAAGGCATAAGTGACTATAAATGGACTTTTCTTGTC
* * * * * * *
12081796 AATAGG-TGACTTTTGGTTCATGC-TTTTC-AAAGTAAA-ACAT
130 AAT-GGATGGCTTTCGCTTCA--CATTTCCTGATGCAAACA-AT
* * * * ** *
12081836 CAAATTATGATCTATCTTAACTAAAAAG---AAAATTCAATTTTAAATCATTTATAA-AGTTATT
1 -AAATTATGATCTGTTTTAACCAAAAAGAAAAAAATTCAACTCAAAATCATTTATAAGA-TTATA
** ** * * * * *
12081897 AAACCACTTAAAACGGGTAACAAGGCTTCTGAAGGCATGAGTGACTATACATTGAC-TTTCATGT
64 AAACCACTTAAAGTGAATAACAAGGCTTTTGAAGGCATAAGTGACTATAAATGGACTTTTCTTGT
* * ** *
12081961 CAATGGATGGCTTTTGCTTCACGTTTTTTGATGCAAACATT
129 CAATGGATGGCTTTCGCTTCACATTTCCTGATGCAAACAAT
* * * ** *
12082002 AAATTGTGATTTGATTTAACCAAAAATGAAAAAACA-TCAACTTGAAATCATTTATAATATTATA
1 AAATTATGATCTGTTTTAACCAAAAA-GAAAAAA-ATTCAACTCAAAATCATTTATAAGATTATA
** * * *
12082066 AATGCATTTAAAGTG-------A-------GAAGGCATAAGTGACTATAGATGGACTTCTCTTGT
64 AAACCACTTAAAGTGAATAACAAGGCTTTTGAAGGCATAAGTGACTATAAATGGACTTTTCTTGT
** * * * * *
12082117 CAATTAATGGCTTTTGCTTCACATTTCTTGTTACAAACAAC
129 CAATGGATGGCTTTCGCTTCACATTTCCTGATGCAAACAAT
* * * * * * **
12082158 AAATTATGATATGTTTTAACCAACAATAAAAAATTTCAATTCAAAATCATTTATAAGGTTATTTA
1 AAATTATGATCTGTTTTAACCAAAAAGAAAAAAATTCAACTCAAAATCATTTATAAGATTATAAA
* * * * * * ** *
12082223 ACCACTTAAA-AGAGTAACAAGGATTTAGAAGGCATTAGCGACTATAAATAAACTTTTCTTGTTA
66 ACCACTTAAAGTGAATAACAAGGCTTTTGAAGGCATAAGTGACTATAAATGGACTTTTCTTGTCA
* * * *
12082287 ATGGATCGCTTTCGCTTCACGTTTCC-CATTGCAAACAAA
131 ATGGATGGCTTTCGCTTCACATTTCCTGA-TGCAAACAAT
** * *
12082326 AAATTACAATATGTTTTAACCAAAAATGAAAAAACAATTCAATTCAAAATCATTTATAA-AGTTA
1 AAATTATGATCTGTTTTAACCAAAAA-G-AAAAA-AATTCAACTCAAAATCATTTATAAGA-TTA
* *** * * * * *
12082390 TAAAACCACTTAAAG-CAAGGT-ATGTGGCTTTCGAAGGCATTAGTAACTATAAATGAAATTTTT
62 TAAAACCACTTAAAGTGAA--TAACAAGGCTTTTGAAGGCATAAGTGACTATAAATG-GACTTTT
** * * *
12082453 CTTGTCAATGGATGGCTTTCGCTTCATGTTTTCTAATGCAAACAAC
124 CTTGTCAATGGATGGCTTTCGCTTCACATTTCCTGATGCAAACAAT
* *
12082499 AAATTATGAT-TAGTTTTAACCAAAAATGAAAAACAATTCAACTTAAAATCATTTATAACATTAT
1 AAATTATGATCT-GTTTTAACCAAAAA-GAAAAA-AATTCAACTCAAAATCATTTATAAGATTAT
* * ** * * * ** * * *
12082563 AAAACCATTTAAAGCGAGCAATAAGTCTTTTAAATACGTAAGTG---ATAGATGGACTTTTTTTG
63 AAAACCACTTAAAGTGAATAACAAGGCTTTTGAAGGCATAAGTGACTATAAATGGACTTTTCTTG
** * * * * *
12082625 TCAACAGATGGCTTTCACCTCACATTT-CTCATTGCTAACAAC
128 TCAATGGATGGCTTTCGCTTCACATTTCCTGA-TGCAAACAAT
* * *
12082667 AAATTATGA-CATGTTTTAACCAACAAAGAAAACTAATTCAATTCAAAATCATATATAA-AGTTA
1 AAATTATGATC-TGTTTTAACCAA-AAAGAAAA-AAATTCAACTCAAAATCATTTATAAGA-TTA
** * * ** * * *
12082730 TAAAACCACTTAAACCGAGTAACGAGGCTTCCGAAGGTATTAGTGACTATGAATGGACTTTTCTT
62 TAAAACCACTTAAAGTGAATAACAAGGCTTTTGAAGGCATAAGTGACTATAAATGGACTTTTCTT
* * *
12082795 GTCAATGGATAGCTTTTGCTTCACGTTTC
127 GTCAATGGATGGCTTTCGCTTCACATTTC
12082824 TCGATACAAA
Statistics
Matches: 1809, Mismatches: 423, Indels: 226
0.74 0.17 0.09
Matches are distributed among these distances:
154 1 0.00
155 59 0.03
156 61 0.03
161 1 0.00
162 1 0.00
164 1 0.00
165 26 0.01
166 39 0.02
167 231 0.13
168 355 0.20
169 95 0.05
170 317 0.18
171 320 0.18
172 217 0.12
173 81 0.04
174 4 0.00
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.34
Consensus pattern (169 bp):
AAATTATGATCTGTTTTAACCAAAAAGAAAAAAATTCAACTCAAAATCATTTATAAGATTATAAA
ACCACTTAAAGTGAATAACAAGGCTTTTGAAGGCATAAGTGACTATAAATGGACTTTTCTTGTCA
ATGGATGGCTTTCGCTTCACATTTCCTGATGCAAACAAT
Found at i:12080958 original size:339 final size:337
Alignment explanation
Indices: 12080339--12080959 Score: 729
Period size: 338 Copynumber: 1.8 Consensus size: 337
12080329 GAAAAATGAA
* **
12080339 AAAATATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGTTTGTC
1 AAAATATTCAACTTAAAATCATTTATAAGATTATAAAACCACTTAAAGCGAGTAACAAACTTGTC
* * * *
12080404 AAAAGTATGAGTGATAGATGTACTTTCCTTGTCAATGGATGGCTTTCACTTCACATTTCTCATTG
66 AAAAGCATAAGTGATAAATGGACTTTCCTTGTCAATGGATGGCTTTCACTTCACATTTCTCATTG
* * ** * *
12080469 TAAACAACAAATTATGATATGTTTGAACCAAAAATGAAAACAAATTCAATTCAAAATCATTATAA
131 CAAACAACAAATTATGATATATTTGAACCAAAAACAAAAACAAATTCAACTCAAAAGCATTATAA
* * * * *
12080534 AGTTATAAAACCACTTAAAGTGAGTAACGAAGCTTTCGAAGGCATTAGTGACTATAAATGGAATG
196 AGCTATAAAACCACTTAAAATGAATAACGAAGCTTTCGAAGGCATGAGTGACTATAAACGGAATG
*
12080599 TTTTTGTCAATGGATGGCTTTCGCTTCATGTTTCACCATGCAAACATCCAATTATGATTTTTTTA
261 TTTTTATCAATGGATGGCTTTCGCTTCATGTTTCACCATGCAAACATCCAATTATGATTTTTTTA
12080664 AATTATAAGTTG
326 AATTATAAGTTG
* * *
12080676 AAAA-ATTCAATTTAAAATCATTTATAA-AGTTAT-AAATCACTTAAAGCTAGTAACAACACTT-
1 AAAATATTCAACTTAAAATCATTTATAAGA-TTATAAAACCACTTAAAGCGAGTAACAA-ACTTG
* * * * * *
12080737 TCACAAGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGTATGGCTTTCGCTTTATATTTCC
64 TCAAAAGCATAAGTG---ATAAATGGACTTTCCTTGTCAATGGATGGCTTTCACTTCACATTT-C
* * * * * *
12080802 TGA-TGCAAACAAGAACTTATGATCTATTTTAGCCAAAAACAACAAAC-AATTCAACTCAAAAGC
125 TCATTGCAAACAACAAATTATGATATATTTGAACCAAAAACAA-AAACAAATTCAACTCAAAAGC
* * *
12080865 ATT-TATAAGACTATAAAACCATTTAAAATGAATAA-GTAGGCTTTTGAAGGCATGAGTGACTAT
189 ATTATA-AAG-CTATAAAACCACTTAAAATGAATAACG-AAGCTTTCGAAGGCATGAGTGACTAT
* *
12080928 AAACGGACT-TTTCTTATCAATGGGTGGCTTTC
251 AAACGGAATGTTT-TTATCAATGGATGGCTTTC
12080960 ACATCACATT
Statistics
Matches: 234, Mismatches: 39, Indels: 20
0.80 0.13 0.07
Matches are distributed among these distances:
335 33 0.14
336 28 0.12
337 6 0.03
338 92 0.39
339 75 0.32
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (337 bp):
AAAATATTCAACTTAAAATCATTTATAAGATTATAAAACCACTTAAAGCGAGTAACAAACTTGTC
AAAAGCATAAGTGATAAATGGACTTTCCTTGTCAATGGATGGCTTTCACTTCACATTTCTCATTG
CAAACAACAAATTATGATATATTTGAACCAAAAACAAAAACAAATTCAACTCAAAAGCATTATAA
AGCTATAAAACCACTTAAAATGAATAACGAAGCTTTCGAAGGCATGAGTGACTATAAACGGAATG
TTTTTATCAATGGATGGCTTTCGCTTCATGTTTCACCATGCAAACATCCAATTATGATTTTTTTA
AATTATAAGTTG
Found at i:12081183 original size:343 final size:335
Alignment explanation
Indices: 12080678--12081535 Score: 829
Period size: 343 Copynumber: 2.5 Consensus size: 335
12080668 ATAAGTTGAA
* ** *
12080678 AAATTCAATTTAAAATCATTTATAAAGTTATAAATCACTTAAAGCT-AGTAACAACAC-TTTCAC
1 AAATTCAATTTCAAATCATTTATAAAGTTATAAAT-ACTTAAAG-TGAGTAACAAGGCTTTTGA-
* * * **
12080741 AAGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGTATGGCTTTCGCTTTATATTTCCTGAT
63 AGGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGACTTTCGCTTTACGTTTCCTGAT
** * * * *
12080806 GCAAACAAGAACTTATGATCTATTTTAGCCAAAAA-CAACAAACAATTCAACTCAAAAGCATTTA
128 GCAAACATTAAATTATGATTTA-TTTAACCAAAAATCAA-AAAAAATTCAACTCAAAAGCATTTA
* * * *
12080870 TAAGACTATAAAACCATTTAAAATGAATAAGTAGGCTTTTGAAGGCA-TGAGTGACTA-TAAACG
191 TAACACTATAAAACCATTTAAAATGAATAAGAAGGCTTTGGAAGG-AGTAAGTGA-TAGT----G
* ** * * * * * * *
12080933 GACTTTTCTTATCAATGGGTGGCTTTCACATCACATTTTTTGA-TGCAAA-ACATCAAATTATGA
250 GACTTTTCCTATCAACAGATAGCCTTCACATCAC-GTTTCTCATTGCAAACA-AT-AAATTATAA
* *
12080996 TCTGTCCTAACCAAAAATAG-AAAT
312 TATGTCCTAACCAAAAA-AGAAAAC
* *
12081020 AAATTCAATTTCAAATTATTTATAAAGTTATAAAAGTACTTAAAGTGAGAAACAAGGCTTTTGAA
1 AAATTCAATTTCAAATCATTTATAAAGTTAT-AAA-TACTTAAAGTGAGTAACAAGGCTTTTGAA
* * * * * * *
12081085 GGCATGAGTGACTATACATTGACTTTTCATGTCAATGGATGACTTTTGCTTCACGTTTTCTGATG
64 GGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGACTTTCGCTTTACGTTTCCTGATG
* * * *
12081150 CAAATATTAAATTATGATTTGATTTAACCAAAAATGAAAAAAAATTCAACTTAAAATCATTTATA
129 CAAACATTAAATTATGATTT-ATTTAACCAAAAATCAAAAAAAATTCAACTCAAAAGCATTTATA
* ** * * *
12081215 ACATTATAAAACCATTTAATGTGAGTAAGAAGTCTTTGGAATGAGTAAGTGATAGTGGACTTTTC
193 ACACTATAAAACCATTTAAAATGAATAAGAAGGCTTTGGAAGGAGTAAGTGATAGTGGACTTTTC
* * * * **
12081280 CTATCAACAGATAGCCTTCGCCTCACGTTTCTCATTGCTAACAATAATTTATAATATGTTTTAAC
258 CTATCAACAGATAGCCTTCACATCACGTTTCTCATTGCAAACAATAAATTATAATATGTCCTAAC
12081345 CAAAAAAGAAAAC
323 CAAAAAAGAAAAC
* * * ** *
12081358 AAATTCAA-TTCAAAATCATATATAAAGTTATCAAACAACTTAAAGCGAGTAATGAGGCTTTCGA
1 AAATTCAATTTC-AAATCATTTATAAAGTTAT-AAA-TACTTAAAGTGAGTAACAAGGCTTTTGA
*
12081422 AGGCATTAGTGACTATAAATGGACTTTTCTTGTCAATGGATGACTTTCGCTTTACGTTTCCTGAT
63 AGGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGACTTTCGCTTTACGTTTCCTGAT
* * **
12081487 GTAAACATCT-AATTATGATTTTTTTTAACC-AAAATTGAAAAAAATTCAA
128 GCAAACAT-TAAATTATGA-TTTATTTAACCAAAAATCAAAAAAAATTCAA
12081536 TTTCAAATCA
Statistics
Matches: 424, Mismatches: 78, Indels: 33
0.79 0.15 0.06
Matches are distributed among these distances:
337 22 0.05
338 158 0.37
339 38 0.09
340 1 0.00
342 33 0.08
343 164 0.39
344 8 0.02
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.34
Consensus pattern (335 bp):
AAATTCAATTTCAAATCATTTATAAAGTTATAAATACTTAAAGTGAGTAACAAGGCTTTTGAAGG
CATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGACTTTCGCTTTACGTTTCCTGATGCA
AACATTAAATTATGATTTATTTAACCAAAAATCAAAAAAAATTCAACTCAAAAGCATTTATAACA
CTATAAAACCATTTAAAATGAATAAGAAGGCTTTGGAAGGAGTAAGTGATAGTGGACTTTTCCTA
TCAACAGATAGCCTTCACATCACGTTTCTCATTGCAAACAATAAATTATAATATGTCCTAACCAA
AAAAGAAAAC
Found at i:12081571 original size:170 final size:168
Alignment explanation
Indices: 12080308--12082920 Score: 1661
Period size: 171 Copynumber: 15.5 Consensus size: 168
12080298 ATGTAAGCAC
* * ** *
12080308 CAAATTGTGATATGTTTTAATGAAAAATGAAAAAATATTCAACTTAAAATCATTTATAAGATTAT
1 CAAATTATGATTTGTTTTAACCAAAAATGAAAAAA-ATTCAA-TTCAAATCATTTATAAG-TTAT
* * * * * * * * * *
12080373 AAAACCATTTAAAGCGAGTAAC-AAGTTTGTCAAAAGTATGAGTG---ATAGATGTACTTTCCTT
63 AAAACCACTTAAAGCGAGTAACGAGGCTT-TCGAAGGCATAAGTGACTATAAATGGACTTTTCTT
* * * * *
12080434 GTCAATGGATGGCTTTCACTTCACATTT-CTCATTGTAAACAA
127 GTCAATGGATGGCTTTCGCTTCACGTTTCCTGA-TGCAAACAT
* *
12080476 CAAATTATGATATGTTTGAACCAAAAATGAAAACAAATTCAATTCAAAATCA-TTATAAAGTTAT
1 CAAATTATGATTTGTTTTAACCAAAAATGAAAA-AAATTCAATTC-AAATCATTTAT-AAGTTAT
* * * *
12080540 AAAACCACTTAAAGTGAGTAACGAAGCTTTCGAAGGCATTAGTGACTATAAATGGAATGTTT-TT
63 AAAACCACTTAAAGCGAGTAACGAGGCTTTCGAAGGCATAAGTGACTATAAATGGACT-TTTCTT
* *
12080604 GTCAATGGATGGCTTTCGCTTCATGTTTCAC-CATGCAAACAT
127 GTCAATGGATGGCTTTCGCTTCACGTTTC-CTGATGCAAACAT
* ** ** *
12080646 CCAATTATGATTT-TTTTAAATTATAAGTTG--AAAAATTCAATTTAAAATCATTTATAAAGTTA
1 CAAATTATGATTTGTTTT-AACCA-AAAATGAAAAAAATTCAA-TTCAAATCATTTAT-AAGTTA
* * * ** *
12080708 T-AAATCACTTAAAGCTAGTAACAACACTTTC-ACAAGCATAAGTGACTATAAATGGACTTTTCT
62 TAAAACCACTTAAAGCGAGTAACGAGGCTTTCGA-AGGCATAAGTGACTATAAATGGACTTTTCT
* * ** *
12080771 TGTCAATGTATGGCTTTCGCTTTATATTTCCTGATGCAAACAA
126 TGTCAATGGATGGCTTTCGCTTCACGTTTCCTGATGCAAACAT
* * * * * * * * *
12080814 GAACTTATGATCTATTTTAGCCAAAAA-CAACAAACAATTCAACTCAAAAGCATTTATAAGACTA
1 CAAATTATGATTTGTTTTAACCAAAAATGAA-AAA-AATTCAATTC-AAATCATTTATAAG-TTA
* ** * * * *
12080878 TAAAACCATTTAAAATGAATAA-GTAGGCTTTTGAAGGCATGAGTGACTATAAACGGACTTTTCT
62 TAAAACCACTTAAAGCGAGTAACG-AGGCTTTCGAAGGCATAAGTGACTATAAATGGACTTTTCT
* * * * * **
12080942 TATCAATGGGTGGCTTTCACATCACATTTTTTGATGCAAAACAT
126 TGTCAATGGATGGCTTTCGCTTCACGTTTCCTGATGC-AAACAT
* ** * *
12080986 CAAATTATGATCTGTCCTAACCAAAAATAGAAATAAATTCAATTTCAAATTATTTATAAAGTTAT
1 CAAATTATGATTTGTTTTAACCAAAAAT-GAAAAAAATTCAA-TTCAAATCATTTAT-AAGTTAT
** * * * * * * * *
12081051 AAAAGTACTTAAAGTGAGAAACAAGGCTTTTGAAGGCATGAGTGACTATACATTGACTTTTCATG
63 AAAACCACTTAAAGCGAGTAACGAGGCTTTCGAAGGCATAAGTGACTATAAATGGACTTTTCTTG
* * * *
12081116 TCAATGGATGACTTTTGCTTCACGTTTTCTGATGCAAATAT
128 TCAATGGATGGCTTTCGCTTCACGTTTCCTGATGCAAACAT
* * * *
12081157 TAAATTATGATTTGATTTAACCAAAAATGAAAAAAAATTCAACTTAAAATCATTTATAACATTAT
1 CAAATTATGATTTGTTTTAACCAAAAATG-AAAAAAATTCAA-TTCAAATCATTTATAA-GTTAT
* * * * * * * *
12081222 AAAACCATTTAATGTGAGTAA-GAAGTCTTTGGAATG-AGTAAGTG---AT-AGTGGACTTTTCC
63 AAAACCACTTAAAGCGAGTAACG-AGGCTTTCGAAGGCA-TAAGTGACTATAAATGGACTTTTCT
* ** * * * * *
12081281 TATCAACAGATAGCCTTCGCCTCACGTTT-CTCATTGCTAACAAT
126 TGTCAATGGATGGCTTTCGCTTCACGTTTCCTGA-TGCAAAC-AT
* * * * *
12081325 -AATTTATAATATGTTTTAACCAAAAAAGAAAACAAATTCAATTCAAAATCATATATAAAGTTAT
1 CAAATTATGATTTGTTTTAACCAAAAATGAAAA-AAATTCAATTC-AAATCATTTAT-AAGTTAT
* * * *
12081389 CAAACAACTTAAAGCGAGTAATGAGGCTTTCGAAGGCATTAGTGACTATAAATGGACTTTTCTTG
63 AAAACCACTTAAAGCGAGTAACGAGGCTTTCGAAGGCATAAGTGACTATAAATGGACTTTTCTTG
* * *
12081454 TCAATGGATGACTTTCGCTTTACGTTTCCTGATGTAAACAT
128 TCAATGGATGGCTTTCGCTTCACGTTTCCTGATGCAAACAT
* * *
12081495 CTAATTATGATTTTTTTTAACCAAAATTGAAAAAAATTCAATTTCAAATCATTTATGAAGTTATA
1 CAAATTATGATTTGTTTTAACCAAAAATGAAAAAAATTCAA-TTCAAATCATTTAT-AAGTTATA
* * * ** ** * *
12081560 AAATCACTTAAAGCGACTAACAACACTTTCGCGGGCATAAGTGATTATAAATAGACTTTTCTTGT
64 AAACCACTTAAAGCGAGTAACGAGGCTTTCGAAGGCATAAGTGACTATAAATGGACTTTTCTTGT
* * * * ** * *
12081625 CAATGTATGGCTTTCGTTTTACATTTCCCAATGTAAACAA
129 CAATGGATGGCTTTCGCTTCACGTTTCCTGATGCAAACAT
* * * * * * * * * *
12081665 GAACTTATGATCTGTTTGAACCAAAAATGAAAAAAAATCACCTTAAAAACATTTCTAAGACTATA
1 CAAATTATGATTTGTTTTAACCAAAAATGAAAAAAATTCA-ATTCAAATCATTTATAAG-TTATA
** ** * * * * * ** * *
12081730 AAACCTTTTAAAATGAATAACTAGGCTTTTGAAGACATGAGTGACTATAACCGAACTTTTCTTAT
64 AAACCACTTAAAGCGAGTAACGAGGCTTTCGAAGGCATAAGTGACTATAAATGGACTTTTCTTGT
* * * * * * * *
12081795 CAATAGG-TGACTTTTGGTTCATGCTTTTC-AAAGTAAAACAT
129 CAAT-GGATGGCTTTCGCTTCACG-TTTCCTGATG-CAAACAT
* * * * * *
12081836 CAAATTATGATCTATCTTAACTAAAAA-G---AAAATTCAATTTTAAATCATTTATAAAGTTATT
1 CAAATTATGATTTGTTTTAACCAAAAATGAAAAAAATTCAA-TTCAAATCATTTAT-AAGTTATA
* * * * * * *
12081897 AAACCACTTAAAACGGGTAACAAGGC-TTCTGAAGGCATGAGTGACTATACATTGAC-TTTCATG
64 AAACCACTTAAAGCGAGTAACGAGGCTTTC-GAAGGCATAAGTGACTATAAATGGACTTTTCTTG
* **
12081960 TCAATGGATGGCTTTTGCTTCACGTTTTTTGATGCAAACAT
128 TCAATGGATGGCTTTCGCTTCACGTTTCCTGATGCAAACAT
* * * * *
12082001 TAAATTGTGATTTGATTTAACCAAAAATGAAAAAACA-TCAACTTGAAATCATTTATAATATTAT
1 CAAATTATGATTTGTTTTAACCAAAAATGAAAAAA-ATTCAA-TTCAAATCATTTATAA-GTTAT
** * * *
12082065 AAATGCA-TTTAA---AGT---GA-------GAAGGCATAAGTGACTATAGATGGACTTCTCTTG
63 AAAACCACTTAAAGCGAGTAACGAGGCTTTCGAAGGCATAAGTGACTATAAATGGACTTTTCTTG
** * * * * * *
12082116 TCAATTAATGGCTTTTGCTTCACATTTCTTGTTACAAACAA
128 TCAATGGATGGCTTTCGCTTCACGTTTCCTGATGCAAACAT
* * * *
12082157 CAAATTATGATATGTTTTAACCAACAAT-AAAAAATTTCAATTCAAAATCATTTATAAGGTTATT
1 CAAATTATGATTTGTTTTAACCAAAAATGAAAAAAATTCAATTC-AAATCATTTATAA-GTTATA
* * * * * * * **
12082221 TAACCACTTAAA-AGAGTAACAAGGATTTAGAAGGCATTAGCGACTATAAATAAACTTTTCTTGT
64 AAACCACTTAAAGCGAGTAACGAGGCTTTCGAAGGCATAAGTGACTATAAATGGACTTTTCTTGT
* * * *
12082285 TAATGGATCGCTTTCGCTTCACGTTTCC-CATTGCAAACAA
129 CAATGGATGGCTTTCGCTTCACGTTTCCTGA-TGCAAACAT
* ** *
12082325 AAAATTACAATATGTTTTAACCAAAAATGAAAAAACAATTCAATTCAAAATCATTTATAAAGTTA
1 CAAATTATGATTTGTTTTAACCAAAAATG-AAAAA-AATTCAATTC-AAATCATTTAT-AAGTTA
* * * * * * *
12082390 TAAAACCACTTAAAGCAAGGT-ATGTGGCTTTCGAAGGCATTAGTAACTATAAATGAAATTTTTC
62 TAAAACCACTTAAAGCGA-GTAACGAGGCTTTCGAAGGCATAAGTGACTATAAATG-GACTTTTC
* * * *
12082454 TTGTCAATGGATGGCTTTCGCTTCATGTTTTCTAATGCAAACAA
125 TTGTCAATGGATGGCTTTCGCTTCACGTTTCCTGATGCAAACAT
* * *
12082498 CAAATTATGATTAGTTTTAACCAAAAATGAAAAACAATTCAACTTAAAATCATTTATAACATTAT
1 CAAATTATGATTTGTTTTAACCAAAAATGAAAAA-AATTCAA-TTCAAATCATTTATAA-GTTAT
* * ** * ** ** * * *
12082563 AAAACCATTTAAAGCGAGCAATAAGTCTTTTAAATACGTAAGTG---ATAGATGGACTTTTTTTG
63 AAAACCACTTAAAGCGAGTAACGAGGCTTTCGAAGGCATAAGTGACTATAAATGGACTTTTCTTG
** * * * * * *
12082625 TCAACAGATGGCTTTCACCTCACATTT-CTCATTGCTAACAA
128 TCAATGGATGGCTTTCGCTTCACGTTTCCTGA-TGCAAACAT
** * *
12082666 CAAATTATGACATGTTTTAACCAACAAA-GAAAACTAATTCAATTCAAAATCATATATAAAGTTA
1 CAAATTATGATTTGTTTTAACCAA-AAATGAAAA-AAATTCAATTC-AAATCATTTAT-AAGTTA
* * * * *
12082730 TAAAACCACTTAAACCGAGTAACGAGGCTTCCGAAGGTATTAGTGACTATGAATGGACTTTTCTT
62 TAAAACCACTTAAAGCGAGTAACGAGGCTTTCGAAGGCATAAGTGACTATAAATGGACTTTTCTT
* * * *
12082795 GTCAATGGATAGCTTTTGCTTCACGTTT-CTCGATACAAATAT
127 GTCAATGGATGGCTTTCGCTTCACGTTTCCT-GATGCAAACAT
** * * * *
12082837 GTAATTATGATTT-TTTT-ACTAAAATTGAAAAAAAAATTCAATTTAAAATCAATTTTTGAAGTT
1 CAAATTATGATTTGTTTTAACCAAAAATG--AAAAAAATTCAA-TTCAAATC-ATTTAT-AAGTT
* * *
12082900 ATAAAAGCAGTTAAAGTGAGT
61 ATAAAACCACTTAAAGCGAGT
12082921 GATTATACAT
Statistics
Matches: 1886, Mismatches: 450, Indels: 215
0.74 0.18 0.08
Matches are distributed among these distances:
154 2 0.00
155 53 0.03
156 66 0.03
158 3 0.00
161 1 0.00
162 1 0.00
165 34 0.02
166 37 0.02
167 225 0.12
168 372 0.20
169 79 0.04
170 327 0.17
171 387 0.21
172 217 0.12
173 79 0.04
174 3 0.00
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.34
Consensus pattern (168 bp):
CAAATTATGATTTGTTTTAACCAAAAATGAAAAAAATTCAATTCAAATCATTTATAAGTTATAAA
ACCACTTAAAGCGAGTAACGAGGCTTTCGAAGGCATAAGTGACTATAAATGGACTTTTCTTGTCA
ATGGATGGCTTTCGCTTCACGTTTCCTGATGCAAACAT
Found at i:12083049 original size:147 final size:147
Alignment explanation
Indices: 12082785--12083062 Score: 357
Period size: 147 Copynumber: 1.9 Consensus size: 147
12082775 ACTATGAATG
* * * * * *
12082785 GACTTTTCTTGTCAATGGATAGCTTTTGCTTCACGTTTCTCGATACAAATATGTAATTATGATTT
1 GACTTTTCATGTCAATGGATAGCTTTCGCTTCACGTTTCCCAATACAAACATGTAATTATGATTA
* * * * *
12082850 TTTTACTAAAATTGAAAAAAAAATTCAATTTAAAATCAATTTTTGAAGTTATAAAAGCAGTTAAA
66 TTTAACCAAAAATGAAAAAAAAATTCAACTTAAAATCAATTTATGAAGTTATAAAAGCAGTTAAA
12082915 GTGAGTGATTATACATT
131 GTGAGTGATTATACATT
* * *
12082932 GACTTTTCATGTCAATGGATCGCTTTCGCTTCACGTTTCCCAATGCAAACAT-TAAATTGTGATC
1 GACTTTTCATGTCAATGGATAGCTTTCGCTTCACGTTTCCCAATACAAACATGT-AATTATGAT-
*
12082996 TGATTTAACCAAAAATG-AAAAAAAATTCAACTTAAAATC-ATTTAT-AAGATTATAAAAGCATT
64 T-ATTTAACCAAAAATGAAAAAAAAATTCAACTTAAAATCAATTTATGAAG-TTATAAAAGCAGT
12083058 TAAAG
127 TAAAG
12083063 CGAGAAAGGT
Statistics
Matches: 112, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
146 4 0.04
147 75 0.67
148 22 0.20
149 11 0.10
ACGTcount: A:0.38, C:0.13, G:0.12, T:0.37
Consensus pattern (147 bp):
GACTTTTCATGTCAATGGATAGCTTTCGCTTCACGTTTCCCAATACAAACATGTAATTATGATTA
TTTAACCAAAAATGAAAAAAAAATTCAACTTAAAATCAATTTATGAAGTTATAAAAGCAGTTAAA
GTGAGTGATTATACATT
Found at i:12083428 original size:171 final size:169
Alignment explanation
Indices: 12083067--12084314 Score: 1041
Period size: 171 Copynumber: 7.4 Consensus size: 169
12083057 TTAAAGCGAG
* * * * * ** * * * *
12083067 AAAGGTATAAGTGACTATAGATGAACTTTTCTTCTCAATTAATGGGTTTTGCTTCATGTTT-TTC
1 AAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCT-
* * * *
12083131 ATTGCAAACAACAAATTATGATATGTTTTAACCAAAAAT-TAAA-AATTTCAATTCAAAATCATT
65 A-TGCAAACAACAAATTATGATAT-ATTTAACCAAAAATGAAAACAAATTCAATTTAAAATCATT
* * ** * **
12083194 TATAAGGTTATTAAACCACTTAAAGTGAGTAACGAGAATTTC
128 TATAAAGTTATAAAACCACTTAAAGCAAGTAACAAGGCTTTC
* * * * *
12083236 GAAGCCATTAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACATTTCCTT
1 AAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTA
* * * *
12083301 TCGCTAACAACAAATTATGATATGGTTTCACCAAAAATGAAAACAAATTCAATTCAAAATCATTT
66 T-GCAAACAACAAATTATGATAT-ATTTAACCAAAAATGAAAACAAATTCAATTTAAAATCATTT
* * *
12083366 ATAAAGTTATAAAACCACTTAAAGCAATTAATATGGCTTTC
129 ATAAAGTTATAAAACCACTTAAAGCAAGTAACAAGGCTTTC
* * * * *
12083407 GAAGGCATTGA-TGATTATAAATGGACTTTTCTTGTCAATTGATGGCTTTTGCTTCATGTTTCCC
1 AAAGGCA-TGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTT-CC
* * * * *
12083471 AATGGAAACAACAAATTATTATGTATTTGAACCAAAAATGAAAAAAAAATTCAATTTAAAATCAT
64 TATGCAAACAACAAATTATGATATATTT-AACCAAAAATG-AAAACAAATTCAATTTAAAATCAT
* *
12083536 TTAT-AAGATTATAAAACCATTTAAA-CTAAGTAACAAGGCTGTC
127 TTATAAAG-TTATAAAACCACTTAAAGC-AAGTAACAAGGCTTTC
* * * * * * ** *
12083579 AACGGCATGACTAACTATAAATGGACCTTTC-TATCAATGAATGGCTTTAACTTCTCGTTTCCTG
1 AAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCT-
* * ** *
12083643 ATGCAAACAATAAA-TCT--T-T-TTTAATAAAAAATGAAAACAAATTCAACTTAAAATCATTTA
65 ATGCAAACAACAAATTATGATATATTTAACCAAAAATGAAAACAAATTCAATTTAAAATCATTTA
* ** *
12083703 T-AAGATTATAAAACTACTTAAAGTGTA-TAACTAGGCTTTC
130 TAAAG-TTATAAAACCACTTAAAG-CAAGTAACAAGGCTTTC
* * *
12083743 AAAGGCATGAGTGACTATAAATGGACATTCCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCG
1 AAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTC-CT
* * * * *
12083808 ATGCAAACATCAAATTATGATCTATTTTAACCAGAATTGAAAACAAATTTAATTTAAAATCATTT
65 ATGCAAACAACAAATTATGATATA-TTTAACCAAAAATGAAAACAAATTCAATTTAAAATCATTT
* * * *
12083873 ATAAAGTCATAAAACCACATAAAACTAGTAACAAGGCTTTC
129 ATAAAGTTATAAAACCACTTAAAGCAAGTAACAAGGCTTTC
* * * *
12083914 AAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATAGCTTTTGCTTCACGGTT-CTA
1 AAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCT-
* * * *
12083978 GATGCAAACATCAAATTATGA-ACTGTTGCAACCAAAAATGAGAA-AAATTCAATTTTAAAATCA
65 -ATGCAAACAACAAATTATGATA-TATT-TAACCAAAAATGAAAACAAATTCAA-TTTAAAATCA
* * *
12084041 TTTATAAAATTATAAACCCATTTAAAGCAAGTAACAAGGCTTTC
126 TTTATAAAGTTATAAAACCACTTAAAGCAAGTAACAAGGCTTTC
* * * * * * * * *
12084085 GATGCCATGAGCGAAC-AAAAATGGACTTTTTTCTTGTCAAAGGATGTCTTTTGTTTCACGTTTC
1 AAAGGCATGAGTG-ACTATAAATGGAC--TTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTC
* * * * * * **
12084149 TTGATGCAAACAATAATTTATGATCTATTTTATCCAAAAA--AAAAC--ATTGAATTGGAAATCA
63 CT-ATGCAAACAACAAATTATGATATA-TTTAACCAAAAATGAAAACAAATTCAATTTAAAATCA
* * * * *
12084210 TTTAT-AAGATTATAAAAACATTTAAAGTGAA-TAACCATGCTTTC
126 TTTATAAAG-TTATAAAACCACTTAAAG-CAAGTAACAAGGCTTTC
* * * * * *
12084254 AAAGGTATTAATGACTATAAATGGACTTTTCTTGTCAACGGATGGCTTTCGTTTCATGTTT
1 AAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTT
12084315 TCTAATACAC
Statistics
Matches: 874, Mismatches: 166, Indels: 80
0.78 0.15 0.07
Matches are distributed among these distances:
164 82 0.09
165 47 0.05
166 6 0.01
167 32 0.04
168 7 0.01
169 138 0.16
170 29 0.03
171 388 0.44
172 86 0.10
173 56 0.06
174 3 0.00
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.34
Consensus pattern (169 bp):
AAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTA
TGCAAACAACAAATTATGATATATTTAACCAAAAATGAAAACAAATTCAATTTAAAATCATTTAT
AAAGTTATAAAACCACTTAAAGCAAGTAACAAGGCTTTC
Found at i:12083750 original size:336 final size:337
Alignment explanation
Indices: 12083067--12085024 Score: 1190
Period size: 340 Copynumber: 5.8 Consensus size: 337
12083057 TTAAAGCGAG
* * * * * * * *
12083067 AAAGGTATAAGTGACTATAGATGAACTTTTCTTCTCAATTAATGGGTTTTGCTTCATGTTTTTCA
1 AAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATTGATGGCTTTTGCTTCATGTTTCTCA
* * * *
12083132 TTGCAAACAACAAATTATGATATGT-TTTAACCAAAAAT--TAAAAATTTCAATTCAAAATCATT
66 ATGCAAACAACAAATTAT--TATGTATTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATT
* * * * * ** * *
12083194 TATAAGGTTATTAAACCACTTAAAGTGAGTAACGAGAATTTCGAAGCCATTAGTGACTATAAATG
129 TATAAGATTATAAAACCAATTAAACT-AGTAACAAGGCTTTC-AAGGCATGAGTGACTATAAATG
* ** * *
12083259 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACATTTCCTTTCGCTAACAACAAATTATGATAT
192 GACTTTTCTTATCAATGGATGGCTTTAACTTCACATTTCCTATCGCAAACAACAAATTAT-ATAT
* *
12083324 GGTTTCACCAAAAATGAAAACAAATTCAATTCAAAATCATTTATAAAGTTATAAAACCACTTAAA
256 -GTTTAACAAAAAATGAAAACAAATTCAATTCAAAATCATTTATAAAGTTATAAAACCACTTAAA
12083389 GCAATTAATATGGCTTTC
320 GCAATTAATATGGCTTTC
* * *
12083407 GAAGGCATTGA-TGATTATAAATGGACTTTTCTTGTCAATTGATGGCTTTTGCTTCATGTTTCCC
1 AAAGGCA-TGAGTGACTATAAATGGACTTTTCTTGTCAATTGATGGCTTTTGCTTCATGTTTCTC
*
12083471 AATGGAAACAACAAATTATTATGTATTTGAACCAAAAATGAAAAAAAAATTCAATTTAAAATCAT
65 AATGCAAACAACAAATTATTATGTATTT-AACCAAAAATG-AAAAAAAATTCAATTTAAAATCAT
* * * *
12083536 TTATAAGATTATAAAACCATTTAAACTAAGTAACAAGGCTGTCAACGGCATGACTAACTATAAAT
128 TTATAAGATTATAAAACCAATTAAACT-AGTAACAAGGCTTTCAA-GGCATGAGTGACTATAAAT
* * * * * *
12083601 GGACCTTTC-TATCAATGAATGGCTTTAACTTCTCGTTTCCTGAT-GCAAACAATAAA-TCT-T-
191 GGACTTTTCTTATCAATGGATGGCTTTAACTTCACATTTCCT-ATCGCAAACAACAAATTATATA
* *
12083661 T-TTTAATAAAAAATGAAAACAAATTCAACTT-AAAATCATTTAT-AAGATTATAAAACTACTTA
255 TGTTTAACAAAAAATGAAAACAAATTCAA-TTCAAAATCATTTATAAAG-TTATAAAACCACTTA
**
12083723 AAG-TGTATAACTA-GGCTTTC
318 AAGCAAT-TAA-TATGGCTTTC
* * * * * *
12083743 AAAGGCATGAGTGACTATAAATGGACATTCCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCG
1 AAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATTGATGGCTTTTGCTTCATGTTTCTCA
* * * * * * *
12083808 ATGCAAACATCAAATTATGATCTATTTTAACCAGAATTGAAAACAAATTTAATTTAAAATCATTT
66 ATGCAAACAACAAATTATTATGTA-TTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTT
* *
12083873 ATAA-AGTCATAAAACCACATAAAACTAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATG
130 ATAAGA-TTATAAAACCA-ATTAAACTAGTAACAAGGCTTTC-AAGGCATGAGTGACTATAAATG
* ** ** *
12083937 GACTTTTCTTATCAATGGATAGCTTTTGCTTCACGGTT-CTAGAT-GCAAACATCAAATTATGA-
192 GACTTTTCTTATCAATGGATGGCTTTAACTTCACATTTCCT--ATCGCAAACAACAAATTAT-AT
* * * * * * *
12083999 ACTGTTGCAACCAAAAATGAGAA-AAATTCAATTTTAAAATCATTTATAAAATTATAAACCCATT
254 A-TGTT-TAACAAAAAATGAAAACAAATTCAA-TTCAAAATCATTTATAAAGTTATAAAACCACT
* * *
12084063 TAAAGCAAGTAACAAGGCTTTC
316 TAAAGCAATTAATATGGCTTTC
* * * * * ** * * *
12084085 GATGCCATGAGCGAAC-AAAAATGGACTTTTTTCTTGTCAAAGGATGTCTTTTGTTTCACGTTTC
1 AAAGGCATGAGTG-ACTATAAATGGAC--TTTTCTTGTCAATTGATGGCTTTTGCTTCATGTTTC
** * * * * * * * **
12084149 TTGATGCAAACAATAATTTATGATCTATTTTATCC--AAA--AAAAAACATTGAATTGGAAATCA
63 TCAATGCAAACAACAAATTATTATGTA-TTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCA
* * * * * * * * *
12084210 TTTATAAGATTATAAAAACATTTAAAGTGAATAACCATGCTTTCAAAGGTATTAATGACTATAAA
127 TTTATAAGATTATAAAACCAATTAAACT-AGTAACAAGGCTTTC-AAGGCATGAGTGACTATAAA
* * *** ** * * * * *
12084275 TGGACTTTTCTTGTCAACGGATGGCTTTCGTTTCATGTTTTCTAAT-ACACACATCAAATTTTAA
190 TGGACTTTTCTTATCAATGGATGGCTTTAACTTCACATTTCCT-ATCGCAAACAACAAATTAT-A
* * * * * *
12084339 TCTCCTTTAATAAAAAATG-AAA-AAA--CAACTC--AA-C---T-TACA---AT-----CATTT
253 TAT-GTTTAACAAAAAATGAAAACAAATTCAATTCAAAATCATTTATAAAGTTATAAAACCACTT
* * * ** *
12084385 AAAGCGAGTAACAAAGCTTTT
317 AAAGCAATTAATATGGCTTTC
* * * * *
12084406 AAAGACATGAGTGACTATAAATGGACTTTTCTTGTCACTAGATGGCTTTTGCTTCACGTTTCCCC
1 AAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATTGATGGCTTTTGCTTCATGTTT-CTC
* * * * * * ***
12084471 ATTGCGAACAA-TAATTATGATATGT-TGTAACCAAAAAT-AAAAGCAATTTTTGTTTAAAATCA
65 AATGCAAACAACAAATTAT--TATGTATTTAACCAAAAATGAAAA-AAAATTCAATTTAAAATCA
* * *** * * *
12084533 TTTATAA-AGTTGTAAAACCACTTAATGGGAGTAACAAGGCTTTTAAAGGTATGAGTGACTACAA
127 TTTATAAGA-TTATAAAACCAATTAA-ACTAGTAACAAGGC-TTTCAAGGCATGAGTGACTATAA
* * * ** * * *
12084597 ATGGACTTTTCTTGTTAATGGATAGCTTTTGCTTCACGTTTCCCAAT-GTAAACAACAAATTATG
189 ATGGACTTTTCTTATCAATGGATGGCTTTAACTTCACATTT-CCTATCGCAAACAACAAATTAT-
** * * *
12084661 ATCCGTTTTAACCAAAAATGAAAAC-AATTCAATTTAAAATCATTTAT-AAGATTATAAAATCA-
252 ATATG-TTTAACAAAAAATGAAAACAAATTCAATTCAAAATCATTTATAAAG-TTATAAAACCAC
* * * *
12084723 TATAAAGCAAGTAACCA-GACTTTT
315 T-TAAAGCAATTAA-TATGGCTTTC
* * * * * *
12084747 GAAGGCATGAGTGACTATAATTGGACTTTTCTTGTCTATGGATAGCTTTTGCTTCACGTTT-TCA
1 AAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATTGATGGCTTTTGCTTCATGTTTCTCA
* * * *
12084811 ATGCACAA-AACAAATTATGATATGT-TGTAA-CAATATATGGAAAAAAATTCAATTGAAAATCA
66 ATGCA-AACAACAAATTAT--TATGTATTTAACCAA-AAATGAAAAAAAATTCAATTTAAAATCA
* * * * *** * **
12084873 TTTATGAA-ATTATAAAATCATTTAATGCAAGTAACAAGGCTTTCGAAAATATAAGTGACTGCAA
127 TTTAT-AAGATTATAAAACCAATTAA-ACTAGTAACAAGGCTTTC-AAGGCATGAGTGACTATAA
* * * ** * *
12084937 ATAGACTTTTCTTATCAATGGACGGCTTTCACTTCATGTTTTCCTAT-GTAAAGAACAAATTATG
189 ATGGACTTTTCTTATCAATGGATGGCTTTAACTTCA-CATTTCCTATCGCAAACAACAAATTAT-
* *
12085001 ATTTGTTTTAACCAAAAATGAAAA
252 ATATG-TTTAACAAAAAATGAAAA
12085025 AAAAATATGT
Statistics
Matches: 1282, Mismatches: 256, Indels: 160
0.76 0.15 0.09
Matches are distributed among these distances:
319 40 0.03
320 11 0.01
321 47 0.04
322 5 0.00
323 118 0.09
324 10 0.01
326 6 0.00
328 2 0.00
329 4 0.00
330 1 0.00
332 2 0.00
333 2 0.00
334 3 0.00
335 86 0.07
336 191 0.15
337 12 0.01
338 6 0.00
339 27 0.02
340 355 0.28
341 103 0.08
342 109 0.09
343 82 0.06
344 60 0.05
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.34
Consensus pattern (337 bp):
AAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATTGATGGCTTTTGCTTCATGTTTCTCA
ATGCAAACAACAAATTATTATGTATTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTA
TAAGATTATAAAACCAATTAAACTAGTAACAAGGCTTTCAAGGCATGAGTGACTATAAATGGACT
TTTCTTATCAATGGATGGCTTTAACTTCACATTTCCTATCGCAAACAACAAATTATATATGTTTA
ACAAAAAATGAAAACAAATTCAATTCAAAATCATTTATAAAGTTATAAAACCACTTAAAGCAATT
AATATGGCTTTC
Found at i:12083869 original size:507 final size:505
Alignment explanation
Indices: 12083177--12085027 Score: 1352
Period size: 507 Copynumber: 3.7 Consensus size: 505
12083167 AATTAAAAAT
* * * ** * *
12083177 TTCAATTCAAAATCATTTATAAGGTTATTAAACCACTTAAAGTGAGTAACGAGAATTTCGAAGCC
1 TTCAATTCAAAATCATTTATAAGATTA-TAAAACACTTAAAGTGA-TAACCAGGCTTTCAAAGGC
* ** *
12083242 ATTAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACATTTCCTTTCGCTA
64 ATTAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCGATCGCAA
* *
12083307 ACAACAAATTATGATATGGTTTCACCAAAAATGAAAACAAATTCAATTCAAAATCATTTATAAAG
129 ACAACAAATTATGATATAGTTTAACCAAAAATGAAAACAAATTCAATTCAAAATCATTTATAAAG
* * * * * * * *
12083372 TTATAAAACCACTTAAAGCAATTAATATGGCTTTCGAAGGCATTGA-TGATTATAAATGGACTTT
194 TCATAAAACCACATAAAACAAGTAACAAGGCTTTCAAAGGCA-TGAGTGACTATAAATGGACTTT
* * * * * * * ** *
12083436 TCTTGTCAATTGATGGCTTTTGCTTCATGTTTCCCA-ATGGAAACAACAAATTATTATGTATTTG
258 TCTTATCAATGGATAGCTTTTGCTTCACGGTT-CCAGATGCAAACAACAAATTATGAACT-GTTG
*
12083500 -AACCAAAAATGAAAAAAAAATTCAA-TTTAAAATCATTTATAAGATTATAAAACCATTTAAA-C
321 CAACCAAAAATG--AAAAAAATTCAATTTTAAAATCATTTATAAAATTATAAAACCATTTAAAGC
* * * *
12083562 TAAGTAACAAGGCTGTCAACGGCATGA-CTAACTATAAATGGAC-CTTTC-TATCAATGAATGGC
384 -AAGTAACAAGGCTGTCAACGCCATGAGCGAAC-AAAAATGGACTCTTTCTTATCAAAGAATGGC
* *
12083624 TTTAACTTCTCGTTTCCTGATGCAAACAAT-A-A-ATCTTTTTTAAT-AAAAAATGAAAACAAA
447 TTTAACTTCACGTTTCCTGATGCAAACAATAATAGATCTATTTT-ATCAAAAAA--AAAAC--A
*
12083684 TTCAACTT-AAAATCATTTATAAGATTATAAAACTACTTAAAGTGTATAACTAGGCTTTCAAAGG
1 TTCAA-TTCAAAATCATTTATAAGATTATAAAAC-ACTTAAAGTG-ATAACCAGGCTTTCAAAGG
* * *
12083748 CATGAGTGACTATAAATGGACATTCCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGAT-GC
63 CATTAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTC-CGATCGC
* * * * * * *
12083812 AAACATCAAATTATGATCTATTTTAACCAGAATTGAAAACAAATTTAATTTAAAATCATTTATAA
127 AAACAACAAATTATGATATAGTTTAACCAAAAATGAAAACAAATTCAATTCAAAATCATTTATAA
*
12083877 AGTCATAAAACCACATAAAACTAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTT
192 AGTCATAAAACCACATAAAACAAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTT
* *
12083942 TTCTTATCAATGGATAGCTTTTGCTTCACGGTTCTAGATGCAAACATCAAATTATGAACTGTTGC
257 TTCTTATCAATGGATAGCTTTTGCTTCACGGTTCCAGATGCAAACAACAAATTATGAACTGTTGC
* *
12084007 AACCAAAAATGAGAAAAATTCAATTTTAAAATCATTTATAAAATTATAAACCCATTTAAAGCAAG
322 AACCAAAAATGAAAAAAATTCAATTTTAAAATCATTTATAAAATTATAAAACCATTTAAAGCAAG
* * * * * * * *
12084072 TAACAAGGCTTTCGATGCCATGAGCGAACAAAAATGGACTTTTTTCTTGTCAAAGGATGTCTTTT
387 TAACAAGGCTGTCAACGCCATGAGCGAACAAAAATGGAC-TCTTTCTTATCAAAGAATGGCTTTA
** * *
12084137 GTTTCACGTTTCTTGATGCAAACAATAATTTATGATCTATTTTATCCAAAAAAAAACA
451 ACTTCACGTTTCCTGATGCAAACAATAA--TA-GATCTATTTTATCAAAAAAAAAACA
* ** * * *
12084195 TTGAATTGGAAATCATTTATAAGATTATAAAAACATTTAAAGTGAATAACCATGCTTTCAAAGGT
1 TTCAATTCAAAATCATTTATAAGATTAT-AAAACACTTAAAGTG-ATAACCAGGCTTTCAAAGGC
* * * * ** *
12084260 ATTAATGACTATAAATGGACTTTTCTTGTCAACGGATGGCTTTCGTTTCATGTTTTCTAAT-ACA
64 ATTAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACG-TTTCCGATCGCA
* * * * * ** ** * *
12084324 CACATCAAATTTTAATCTCCTTTAATAAAAAATG-AAA-AAA--CAACTC--AA-C--TTA-CAA
128 AACAACAAATTATGATATAGTTTAACCAAAAATGAAAACAAATTCAATTCAAAATCATTTATAAA
* * * * * *
12084379 -TCAT--------TTAAAGCGAGTAACAAAGCTTTTAAAGACATGAGTGACTATAAATGGACTTT
193 GTCATAAAACCACATAAAACAAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTT
* * * * * ** * *
12084435 TCTTGTCACTAGATGGCTTTTGCTTCACGTTTCCCCATTGCGAACAA-TAATTATGATA-TGTTG
258 TCTTATCAATGGATAGCTTTTGCTTCACGGTTCCAGA-TGCAAACAACAAATTATGA-ACTGTTG
* * ** * * * * *
12084498 TAACCAAAAAT-AAAAGCAATT-TTTGTTTAAAATCATTTATAAAGTTGTAAAACCACTTAATGG
321 CAACCAAAAATGAAAA-AAATTCAAT-TTTAAAATCATTTATAAAATTATAAAACCATTTAAAGC
* * * * ** * * * * * * *
12084561 GAGTAACAAGGCTTTTAAAGGTATGAGTG-ACTACAAATGGACT-TTTCTTGTTAATGGATAGCT
384 AAGTAACAAGGCTGTCAACGCCATGAGCGAAC-AAAAATGGACTCTTTCTTATCAAAGAATGGCT
** ** * * ** * *
12084624 TTTGCTTCACGTTTCCCAATGTAAACAACAAATTATGATCCGTTTTAACCAAAAATGAAAACAA
448 TTAACTTCACGTTTCCTGATGCAAACAA-TAA-TA-GATCTATTTT-ATCAAAAA-AAAAAC-A
* ** * **
12084688 TTCAATTTAAAATCATTTATAAGATTATAAAATCA-TATAAAGCAAGTAACCAGACTTTTGAAGG
1 TTCAATTCAAAATCATTTATAAGATTATAAAA-CACT-TAAAGTGA-TAACCAGGCTTTCAAAGG
* * * * * * *
12084752 CATGAGTGACTATAATTGGACTTTTCTTGTCTATGGATAGCTTTTGCTTCACGTTTTCAAT-GCA
63 CATTAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCGATCGCA
* *
12084816 CAA-AACAAATTATGATAT-GTTGTAA-CAATATATGGAAAA-AAATTCAATTGAAAATCATTTA
128 -AACAACAAATTATGATATAGTT-TAACCAA-AAAT-GAAAACAAATTCAATTCAAAATCATTTA
* * ** ** ** * ** *
12084877 TGAAA-TTATAAAATCATTTAATGCAAGTAACAAGGCTTTCGAAA-ATATAAGTGACTGCAAATA
189 T-AAAGTCATAAAACCACATAAAACAAGTAACAAGGCTTTC-AAAGGCATGAGTGACTATAAATG
** ** * * * * * **
12084940 GACTTTTCTTATCAATGGACGGCTTTCACTTCATGTTTTCC-TATGTAAAGAACAAATTATGATT
252 GACTTTTCTTATCAATGGATAGCTTTTGCTTCACG-GTTCCAGATGCAAACAACAAATTATGAAC
**
12085004 TGTTTTAACCAAAAATGAAAAAAA
316 TGTTGCAACCAAAAATGAAAAAAA
12085028 AATATGTCAA
Statistics
Matches: 1078, Mismatches: 204, Indels: 120
0.77 0.15 0.09
Matches are distributed among these distances:
490 51 0.05
491 19 0.02
492 201 0.19
493 100 0.09
494 6 0.01
496 4 0.00
498 2 0.00
499 1 0.00
500 4 0.00
501 5 0.00
502 3 0.00
503 5 0.00
504 1 0.00
505 13 0.01
506 78 0.07
507 273 0.25
508 9 0.01
509 38 0.04
510 12 0.01
511 211 0.20
512 21 0.02
513 6 0.01
514 2 0.00
515 13 0.01
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.33
Consensus pattern (505 bp):
TTCAATTCAAAATCATTTATAAGATTATAAAACACTTAAAGTGATAACCAGGCTTTCAAAGGCAT
TAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCGATCGCAAAC
AACAAATTATGATATAGTTTAACCAAAAATGAAAACAAATTCAATTCAAAATCATTTATAAAGTC
ATAAAACCACATAAAACAAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCT
TATCAATGGATAGCTTTTGCTTCACGGTTCCAGATGCAAACAACAAATTATGAACTGTTGCAACC
AAAAATGAAAAAAATTCAATTTTAAAATCATTTATAAAATTATAAAACCATTTAAAGCAAGTAAC
AAGGCTGTCAACGCCATGAGCGAACAAAAATGGACTCTTTCTTATCAAAGAATGGCTTTAACTTC
ACGTTTCCTGATGCAAACAATAATAGATCTATTTTATCAAAAAAAAAACA
Found at i:12084331 original size:340 final size:339
Alignment explanation
Indices: 12083247--12084334 Score: 830
Period size: 336 Copynumber: 3.2 Consensus size: 339
12083237 AAGCCATTAG
* * * ** * * *
12083247 TGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACATTTCCT--TTCGCTAACA
1 TGACTATAAATGGACTTTTCTTATCAACGGATAGCTTTCGCTTCACGGTT-CTAGAT-ACAAACA
* * *
12083310 ACAAATTATGATA-TGGTTTC-ACCAAAAATGAAAACAAATTCAA-TTCAAAATCATTTATAAAG
64 TCAAATTATGA-ACT-GTTGCAACCAAAAATGAAAACAAATTCAACTT-AAAATCATTTATAAAA
* * * * * * * *
12083372 TTATAAAACCACTTAAAG-CAATTAATATGGCTTTCGAAGGCATTGA-TGATTATAAATGGACTT
126 TTATAAAACCACTTAAAGTCAA-TAACAAGGCTTTCAAAGCCA-TGAGCGACTAAAAATGGACAT
* ** * * * * * * * * *
12083435 TTCTTGTCAATTGATGGCTTTTGCTTCATGTTTCCCAATGGAAACAACAAATTATTATGTATTTG
189 TCCTTGTCAAAGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACATCAAATTATGATCTATTTT
* * * * * *
12083500 AACCAAAAATGAAAAAAAAATTCAATTTAAAATCATTTAT-AAGATTATAAAAC-CATTTAAACT
254 AACC-AGAAT--AAAACAAATTGAATTGAAAATCATTTATAAAG-TCATAAAACACA-TAAAACT
* * *
12083563 AAGTAACAAGGCTGTCAACGGCATGAC
314 AA-TAACAAGGCTTTCAAAGGCATGAA
* * * * * ** * * *
12083590 TAACTATAAATGGACCTTTC-TATCAATGAATGGCTTTAACTTCTCGTTTCCT-GATGCAAACAA
1 TGACTATAAATGGACTTTTCTTATCAACGGATAGCTTTCGCTTCACGGTT-CTAGATACAAAC-A
* ** *
12083653 T-AAATCT-T----T-TT-TAATAAAAAATGAAAACAAATTCAACTTAAAATCATTTATAAGATT
64 TCAAAT-TATGAACTGTTGCAACCAAAAATGAAAACAAATTCAACTTAAAATCATTTATAAAATT
* ** * * * *
12083710 ATAAAACTACTTAAAGTGTATAACTAGGCTTTCAAAGGCATGAGTGACTATAAATGGACATTCCT
128 ATAAAACCACTTAAAGTCAATAACAAGGCTTTCAAAGCCATGAGCGACTAAAAATGGACATTCCT
*
12083775 TGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACATCAAATTATGATCTATTTTAACC
193 TGTCAAAGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACATCAAATTATGATCTATTTTAACC
* * *
12083840 AGAATTGAAAACAAATTTAATTTAAAATCATTTATAAAGTCATAAAACCACATAAAACTAGTAAC
258 AGAA-T-AAAACAAATTGAATTGAAAATCATTTATAAAGTCATAAAA-CACATAAAACTAATAAC
*
12083905 AAGGCTTTCAAAGGCATGAG
320 AAGGCTTTCAAAGGCATGAA
* * *
12083925 TGACTATAAATGGACTTTTCTTATCAATGGATAGCTTTTGCTTCACGGTTCTAGATGCAAACATC
1 TGACTATAAATGGACTTTTCTTATCAACGGATAGCTTTCGCTTCACGGTTCTAGATACAAACATC
* *
12083990 AAATTATGAACTGTTGCAACCAAAAATGAGAA-AAATTCAATTTTAAAATCATTTATAAAATTAT
66 AAATTATGAACTGTTGCAACCAAAAATGAAAACAAATTCAA-CTTAAAATCATTTATAAAATTAT
* * * * * *
12084054 AAACCCATTTAAAG-CAAGTAACAAGGCTTTCGATGCCATGAGCGAAC-AAAAATGGACTTTTTT
130 AAAACCACTTAAAGTCAA-TAACAAGGCTTTCAAAGCCATGAGCG-ACTAAAAATGGAC--ATTC
* * * * *
12084117 CTTGTCAAAGGATGTCTTTTGTTTCACGTTTCTTGATGCAAACAAT-AATTTATGATCTATTTTA
191 CTTGTCAAAGGATGGCTTTCGCTTCACGTTTCTCGATGCAAAC-ATCAAATTATGATCTATTTTA
* * * * *
12084181 TCCA-AA-AAAA-AACATTGAATTGGAAATCATTTAT-AAGATTATAAAA-ACATTTAAAGTGAA
255 ACCAGAATAAAACAA-ATTGAATTGAAAATCATTTATAAAG-TCATAAAACACA-TAAAACT-AA
* * * *
12084241 TAACCATGCTTTCAAAGGTATTAA
316 TAACAAGGCTTTCAAAGGCATGAA
* * * * * *
12084265 TGACTATAAATGGACTTTTCTTGTCAACGGATGGCTTTCGTTTCATGTTTTCTA-ATACACACAT
1 TGACTATAAATGGACTTTTCTTATCAACGGATAGCTTTCGCTTCACG-GTTCTAGATACAAACAT
12084329 CAAATT
65 CAAATT
12084335 TTAATCTCCT
Statistics
Matches: 612, Mismatches: 101, Indels: 67
0.78 0.13 0.09
Matches are distributed among these distances:
335 83 0.14
336 192 0.31
337 5 0.01
338 4 0.01
339 10 0.02
340 105 0.17
341 16 0.03
342 110 0.18
343 25 0.04
344 60 0.10
345 2 0.00
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.34
Consensus pattern (339 bp):
TGACTATAAATGGACTTTTCTTATCAACGGATAGCTTTCGCTTCACGGTTCTAGATACAAACATC
AAATTATGAACTGTTGCAACCAAAAATGAAAACAAATTCAACTTAAAATCATTTATAAAATTATA
AAACCACTTAAAGTCAATAACAAGGCTTTCAAAGCCATGAGCGACTAAAAATGGACATTCCTTGT
CAAAGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACATCAAATTATGATCTATTTTAACCAGA
ATAAAACAAATTGAATTGAAAATCATTTATAAAGTCATAAAACACATAAAACTAATAACAAGGCT
TTCAAAGGCATGAA
Found at i:12084357 original size:340 final size:336
Alignment explanation
Indices: 12083333--12084877 Score: 809
Period size: 336 Copynumber: 4.6 Consensus size: 336
12083323 TGGTTTCACC
*
12083333 AAAAATGAAAACAAATTCAA-TTCAAAATCATTTATAAAGTTATAAAACCACTTAAAG-CAATTA
1 AAAAATG-AAA-AAATTCAACTT-AAAATCATTTATAAAATTATAAAACCACTTAAAGTCAA-TA
* * * * * * * * * ** *
12083396 ATATGGCTTTCGAAGGCATTGA-TGATTATAAATGGACTTTTCTTGTCAATTGATGGCTTTTGCT
62 ACAAGGCTTTCAAAGCCA-TGAGCGACTAAAAATGGACATTCCTTGTCAAAGGATGGCTTTCGCT
* * * * * * * * * * *
12083460 TCATGTTTCCCAATGGAAACAACAAATTATTATGTATTTGAACCAAAAATGAAAAAAAAATTCAA
126 TCACGTTTCTCGATGCAAACATCAAATTATGATCTATTTTAACC-AGAAT--AAAACAAATTGAA
* * * * *
12083525 TTTAAAATCATTTAT-AAGATTATAAAAC-CATTTAAACTAAGTAACAAGGCTGTCAACGGCATG
188 TTGAAAATCATTTATAAAG-TCATAAAACACA-TAAAACTAA-TAACAAGGCTTTCAAAGGCATG
* * * * * * ** * * *
12083588 ACTAACTATAAATGGACCTTTC-TATCAATGAATGGCTTTAACTTCTCGTTTCCT-GATGCAAAC
250 AATGACTATAAATGGACTTTTCTTATCAACGGATAGCTTTCGCTTCACGGTT-CTAGATACAAAC
12083651 AAT-AAATCT-T----T-TTTAATA
314 -ATCAAAT-TATGAACTCTTTAATA
* * **
12083669 AAAAATGAAAACAAATTCAACTTAAAATCATTTATAAGATTATAAAACTACTTAAAGTGTATAAC
1 AAAAATG-AAA-AAATTCAACTTAAAATCATTTATAAAATTATAAAACCACTTAAAGTCAATAAC
* * * * *
12083734 TAGGCTTTCAAAGGCATGAGTGACTATAAATGGACATTCCTTGTCAATGGATGGCTTTCGCTTCA
64 AAGGCTTTCAAAGCCATGAGCGACTAAAAATGGACATTCCTTGTCAAAGGATGGCTTTCGCTTCA
* *
12083799 CGTTTCTCGATGCAAACATCAAATTATGATCTATTTTAACCAGAATTGAAAACAAATTTAATTTA
129 CGTTTCTCGATGCAAACATCAAATTATGATCTATTTTAACCAGAA-T-AAAACAAATTGAATTGA
* *
12083864 AAATCATTTATAAAGTCATAAAACCACATAAAACTAGTAACAAGGCTTTCAAAGGCATGAGTGAC
192 AAATCATTTATAAAGTCATAAAA-CACATAAAACTAATAACAAGGCTTTCAAAGGCATGAATGAC
* * *
12083929 TATAAATGGACTTTTCTTATCAATGGATAGCTTTTGCTTCACGGTTCTAGATGCAAACATCAAAT
256 TATAAATGGACTTTTCTTATCAACGGATAGCTTTCGCTTCACGGTTCTAGATACAAACATCAAAT
* * **
12083994 TATGAACTGTTGCAACC
321 TATGAACTCTT-TAATA
* * *
12084011 AAAAATGAGAAAAATTCAATTTTAAAATCATTTATAAAATTATAAACCCATTTAAAG-CAAGTAA
1 AAAAATGA-AAAAATTCAA-CTTAAAATCATTTATAAAATTATAAAACCACTTAAAGTCAA-TAA
* * * * * * *
12084075 CAAGGCTTTCGATGCCATGAGCGAAC-AAAAATGGACTTTTTTCTTGTCAAAGGATGTCTTTTGT
63 CAAGGCTTTCAAAGCCATGAGCG-ACTAAAAATGGAC--ATTCCTTGTCAAAGGATGGCTTTCGC
* * *
12084139 TTCACGTTTCTTGATGCAAACAAT-AATTTATGATCTATTTTATCCA-AA-AAAA-AACATTGAA
125 TTCACGTTTCTCGATGCAAAC-ATCAAATTATGATCTATTTTAACCAGAATAAAACAA-ATTGAA
* * * * * * * *
12084200 TTGGAAATCATTTAT-AAGATTATAAAA-ACATTTAAAGTGAATAACCATGCTTTCAAAGGTATT
188 TTGAAAATCATTTATAAAG-TCATAAAACACA-TAAAACT-AATAACAAGGCTTTCAAAGGCATG
* * * * * *
12084263 AATGACTATAAATGGACTTTTCTTGTCAACGGATGGCTTTCGTTTCATGTTTTCTA-ATACACAC
250 AATGACTATAAATGGACTTTTCTTATCAACGGATAGCTTTCGCTTCACG-GTTCTAGATACAAAC
*
12084327 ATCAAATT-TTAATCTCCTTTAATA
314 ATCAAATTATGAA-CT-CTTTAATA
* * * *
12084351 AAAAATGAAAAAA--CAAC-T-CAA-C---T-T-ACA--AT-----CATTTAAAG-CGAGTAACA
1 AAAAATGAAAAAATTCAACTTAAAATCATTTATAAAATTATAAAACCACTTAAAGTC-AATAACA
* * * * * * * * *
12084398 AAGCTTTTAAAGACATGAGTGACTATAAATGGACTTTTCTTGTCACTA-GATGGCTTTTGCTTCA
65 AGGCTTTCAAAGCCATGAGCGACTAAAAATGGACATTCCTTGTCA-AAGGATGGCTTTCGCTTCA
* * * * * * * * ***
12084462 CGTTTCCCCATTGCGAACA--ATAATTATGATATGTTGTAACCAAAAATAAAAGCAATTTTTGTT
129 CGTTTCTCGA-TGCAAACATCA-AATTATGATCTATTTTAACC-AGAATAAAA-CAAATTGAATT
* ** * **** * * * *
12084525 TAAAATCATTTATAAAGTTGTAAAACCACTTAATGGGAGTAACAAGGCTTTTAAAGGTATGAGTG
190 GAAAATCATTTATAAAGTCATAAAA-CACATAAAACTAATAACAAGGCTTTCAAAGGCATGAATG
* * * * * * * ** *
12084590 ACTACAAATGGACTTTTCTTGTTAATGGATAGCTTTTGCTTCACGTTTCCCA-ATGTAAACAACA
254 ACTATAAATGGACTTTTCTTATCAACGGATAGCTTTCGCTTCACGGTT-CTAGATACAAACATCA
* **
12084654 AATTATGATC-CGTTTTAACC
318 AATTATGAACTC--TTTAATA
* * *
12084674 AAAAATGAAAACAATTCAATTTAAAATCATTTATAAGATTATAAAATCA-TATAAAG-CAAGTAA
1 AAAAATGAAAA-AATTCAACTTAAAATCATTTATAAAATTATAAAACCACT-TAAAGTCAA-TAA
* * ** * * * * * * * * * *
12084737 CCAGACTTTTGAAGGCATGAGTGACTATAATTGGACTTTTCTTGTCTATGGATAGCTTTTGCTTC
63 CAAGGCTTTCAAAGCCATGAGCGACTAAAAATGGACATTCCTTGTCAAAGGATGGCTTTCGCTTC
* * * * * * * *
12084802 ACGTTT-TCAATGCACAA-AACAAATTATGATATGTTGTAACAATATATGGAAAA-AAATTCAAT
128 ACGTTTCTCGATGCA-AACATCAAATTATGATCTATTTTAACCAGA-AT--AAAACAAATTGAAT
12084864 TGAAAATCATTTAT
189 TGAAAATCATTTAT
12084878 GAAATTATAA
Statistics
Matches: 962, Mismatches: 172, Indels: 146
0.75 0.13 0.11
Matches are distributed among these distances:
318 1 0.00
319 48 0.05
320 10 0.01
321 42 0.04
322 8 0.01
323 113 0.12
324 12 0.01
325 2 0.00
326 5 0.01
327 1 0.00
328 4 0.00
329 2 0.00
330 1 0.00
332 1 0.00
333 2 0.00
334 4 0.00
335 84 0.09
336 191 0.20
337 8 0.01
338 3 0.00
339 24 0.02
340 162 0.17
341 91 0.09
342 77 0.08
343 4 0.00
344 60 0.06
345 2 0.00
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.33
Consensus pattern (336 bp):
AAAAATGAAAAAATTCAACTTAAAATCATTTATAAAATTATAAAACCACTTAAAGTCAATAACAA
GGCTTTCAAAGCCATGAGCGACTAAAAATGGACATTCCTTGTCAAAGGATGGCTTTCGCTTCACG
TTTCTCGATGCAAACATCAAATTATGATCTATTTTAACCAGAATAAAACAAATTGAATTGAAAAT
CATTTATAAAGTCATAAAACACATAAAACTAATAACAAGGCTTTCAAAGGCATGAATGACTATAA
ATGGACTTTTCTTATCAACGGATAGCTTTCGCTTCACGGTTCTAGATACAAACATCAAATTATGA
ACTCTTTAATA
Found at i:12084675 original size:171 final size:169
Alignment explanation
Indices: 12084377--12085024 Score: 646
Period size: 170 Copynumber: 3.8 Consensus size: 169
12084367 CTCAACTTAC
* * * *
12084377 AATCATTTAAAGCGAGTAACAAAGCTTTTAAAGACATGAGTGACTATAAATGGACTTTTCTTGTC
1 AATCA-TTAATGCAAGTAACAAGGCTTTTAAAGACATGAGTGACTACAAATGGACTTTTCTTGTC
* * * * * *
12084442 ACTAGATGGCTTTTGCTTCACGTTTCCCCATTGCGAACAA-TAATTATGATATGTTGTAACCAAA
65 AATGGATAGCTTTTGCTTCACGTTT-CCCAATGCAAACAACAAATTATGATATGTTGTAACCAAA
*** *
12084506 AAT-AAAAGCAATTTTTGTTTAAAATCATTTATAAAGTTGTAA
129 AATGAAAA-CAA-TTCAATTTAAAATCATTTATAAAGTTATAA
* ** ** *
12084548 AACCACTTAATGGGAGTAACAAGGCTTTTAAAGGTATGAGTGACTACAAATGGACTTTTCTTGTT
1 AATCA-TTAATGCAAGTAACAAGGCTTTTAAAGACATGAGTGACTACAAATGGACTTTTCTTGTC
* ** *
12084613 AATGGATAGCTTTTGCTTCACGTTTCCCAATGTAAACAACAAATTATGATCCGTTTTAACCAAAA
65 AATGGATAGCTTTTGCTTCACGTTTCCCAATGCAAACAACAAATTATGATATGTTGTAACCAAAA
12084678 ATGAAAACAATTCAATTTAAAATCATTTAT-AAGATTATAA
130 ATGAAAACAATTCAATTTAAAATCATTTATAAAG-TTATAA
* * * * * * *
12084718 AATCATATAAAGCAAGTAACCAGACTTTTGAAGGCATGAGTGACTATAATTGGACTTTTCTTGTC
1 AATCAT-TAATGCAAGTAACAAGGCTTTTAAAGACATGAGTGACTACAAATGGACTTTTCTTGTC
* *
12084783 TATGGATAGCTTTTGCTTCACGTTT-TCAATGCACAA-AACAAATTATGATATGTTGTAA-CAAT
65 AATGGATAGCTTTTGCTTCACGTTTCCCAATGCA-AACAACAAATTATGATATGTTGTAACCAA-
* * *
12084845 ATATGGAAAAAAATTCAATTGAAAATCATTTATGAAA-TTATAA
128 AAAT-GAAAACAATTCAATTTAAAATCATTTAT-AAAGTTATAA
* * * * * *
12084888 AATCATTTAATGCAAGTAACAAGGCTTTCGAAA-ATATAAGTGACTGCAAATAGACTTTTCTTAT
1 AATCA-TTAATGCAAGTAACAAGGCTTT-TAAAGACATGAGTGACTACAAATGGACTTTTCTTGT
** ** * * * * * * *
12084952 CAATGGACGGCTTTCACTTCATGTTTTCCTATGTAAAGAACAAATTATGATTTGTTTTAACCAAA
64 CAATGGATAGCTTTTGCTTCACGTTTCCCAATGCAAACAACAAATTATGATATGTTGTAACCAAA
12085017 AATGAAAA
129 AATGAAAA
12085025 AAAAATATGT
Statistics
Matches: 395, Mismatches: 68, Indels: 29
0.80 0.14 0.06
Matches are distributed among these distances:
168 3 0.01
169 32 0.08
170 216 0.55
171 135 0.34
172 9 0.02
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (169 bp):
AATCATTAATGCAAGTAACAAGGCTTTTAAAGACATGAGTGACTACAAATGGACTTTTCTTGTCA
ATGGATAGCTTTTGCTTCACGTTTCCCAATGCAAACAACAAATTATGATATGTTGTAACCAAAAA
TGAAAACAATTCAATTTAAAATCATTTATAAAGTTATAA
Found at i:12085020 original size:663 final size:659
Alignment explanation
Indices: 12083076--12085028 Score: 1804
Period size: 663 Copynumber: 2.9 Consensus size: 659
12083066 GAAAGGTATA
* * * * * *
12083076 AGTGACTATAGATGAACTTTTCTTCTCAATTA-ATGGGTTTTGCTTCATGTTT-TTCATTGCAAA
1 AGTGACTATAAATGGACTTTTCTTGTCAA-TAGATGGCTTTTGCTTCACGTTTCTCCATTGCAAA
* * * * *
12083139 CAACAAATTATGATATGTTTTAACCAAAAATTAAA-AATTTCAATTCAAAATCATTTATAAGGTT
65 CAA-TAATTATGATATGTTTTAACCAAAAATAAAACAATTTTAATTTAAAATCATTTATAAAGTT
* * * ** * * *
12083203 ATTAAACCACTTAAAGTGAGTAACGAGAATTTCGAAGCCATTAGTGACTATAAATGGACTTTTCT
129 ATAAAACCACTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCT
* * * ** * * *
12083268 TGTCAATGGATGGCTTTCGCTTCACATTTCCTTTCGCT-AACAACAAATTATGATATGGTTTCAC
194 TGTCAATGGATAGCTTTTGCTTCACGTTTCCAAT-G-TAAACAACAAATTATGATCTGTTTTAAC
* *
12083332 CAAAAATGAAAACAAATTCAATTCAAAATCATTTATAAAGTTATAAAACCACTTAAAGCAATTAA
257 CAAAAATGAAAAC-AATTCAATTTAAAATCATTTATAAA-TTATAAAACCA-TTAAAGCAAGTAA
* * * *
12083397 TATGGCTTTCGAAGGCATTGA-TGATTATAAATGGACTTTTCTTGTCAATTGATGGCTTTTGCTT
319 CAAGGCTTTCGAAGGCA-TGAGTGACTATAAATGGACTTTTCTTGTCAATGGAT-GCTTTTGCTT
* * *
12083461 CATGTTTCCCAATGGAAACAACAAATTAT--TATGTATTTGAACCAAAAATGAAAAAAAAATTCA
382 CACGTTTCTCAATGCAAACAACAAATTATGATATGT-TTT-AA-C-AAAATG--AAAAAAATTCA
* * * * * *
12083524 ATTTAAAATCATTTATAAGATTATAAAACCATTTAA-ACTAAGTAACAAGGCTGTCAACGGCATG
441 ATTGAAAATCATTTATAAGATTATAAAAACATTTAATGC-AAGTAACAAGGCTTTCAA-AGTAT-
* * * * * *
12083588 ACTAACTATAAATGGACCTTTC-TATCAATGAATGGCTTTAACTTC-TCG-TTTCCTGATG--CA
503 AATGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCACTTCAT-GTTTTCCT-ATGTAAA
* * **
12083648 AAC-AA-TA-AATCTTTTTTAATAAAAAATGAAAACAAATTCAACTTAAAATCATTTATAAGATT
566 AACAAATTATAAT-TTTTTTAATAAAAAATGAAAAAAAACTCAACTTAAAATCATTTATAAGACG
*
12083710 ATAAAACTACTTAAAGTGTATAACTAGGCTTTCAAAGGCATG
630 AT--AAC-AC-TAAAG-G----ACT--G-TTTCAAAGACATG
* * * * *
12083752 AGTGACTATAAATGGACATTCCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGA-TGCAAAC
1 AGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTTTGCTTCACGTTTCTCCATTGCAAAC
* * * * *
12083816 -ATCAAATTATGATCTATTTTAACCAGAATTGAAAACAAATTTAATTTAAAATCATTTATAAAGT
66 AAT--AATTATGATATGTTTTAACCAAAAAT-AAAACAATTTTAATTTAAAATCATTTATAAAGT
* * * *
12083880 CATAAAACCACATAAAACTAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTC
128 TATAAAACCACTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTC
* * * * * * **
12083945 TTATCAATGGATAGCTTTTGCTTCACGGTTCTAGATGCAAACATCAAATTATGAACTGTTGCAAC
193 TTGTCAATGGATAGCTTTTGCTTCACGTTTCCA-ATGTAAACAACAAATTATGATCTGTTTTAAC
*
12084010 CAAAAATGAGAAA-AATTCAATTTTAAAATCATTTATAAAATTATAAACCCATTTAAAGCAAGTA
257 CAAAAATGA-AAACAATTCAA-TTTAAAATCATTTAT-AAATTATAAAACCA-TTAAAGCAAGTA
* * * * *
12084074 ACAAGGCTTTCGATGCCATGAGCGAAC-AAAAATGGACTTTTTTCTTGTCAAAGGATGTCTTTTG
318 ACAAGGCTTTCGAAGGCATGAGTG-ACTATAAATGGAC--TTTTCTTGTCAATGGATG-CTTTTG
* ** * * * * * * *
12084138 TTTCACGTTTCTTGATGCAAACAATAATTTATGATCTATTTTATCCAAAA--AAAAACATTGAAT
379 CTTCACGTTTCTCAATGCAAACAACAAATTATGATATGTTTTA-ACAAAATGAAAAAAATTCAAT
* * *
12084201 TGGAAATCATTTATAAGATTATAAAAACATTTAAAGTG-AA-TAACCATGCTTTCAAAGGTATTA
443 TGAAAATCATTTATAAGATTATAAAAACATTT-AA-TGCAAGTAACAAGGCTTTCAAA-GTA-TA
* * ** *
12084264 ATGACTATAAATGGACTTTTCTTGTCAACGGATGGCTTTCGTTTCATGTTTT-CTA-ATACACAC
504 ATGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCACTTCATGTTTTCCTATGTA-A-A-
* * ** *
12084327 ATCAAATTTTAATCTCCTTTAATAAAAAATGAAAAAACAACTCAACTTACAATCATTTA-AAG-C
566 AACAAATTATAAT-TTTTTTAATAAAAAATGAAAAAA-AACTCAACTTAAAATCATTTATAAGAC
12084390 GAGT-A-AC-AAA-G-CT-TTT-AAAGACATG
629 GA-TAACACTAAAGGACTGTTTCAAAGACATG
* * *
12084415 AGTGACTATAAATGGACTTTTCTTGTCACTAGATGGCTTTTGCTTCACGTTTCCCCATTGCGAAC
1 AGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTTTGCTTCACGTTTCTCCATTGCAAAC
* ** *
12084480 AATAATTATGATATGTTGTAACCAAAAATAAAAGCAATTTTTGTTTAAAATCATTTATAAAGTTG
66 AATAATTATGATATGTTTTAACCAAAAATAAAA-CAATTTTAATTTAAAATCATTTATAAAGTTA
* * * * *
12084545 TAAAACCACTTAATGGGAGTAACAAGGCTTTTAAAGGTATGAGTGACTACAAATGGACTTTTCTT
130 TAAAACCACTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTT
* *
12084610 GTTAATGGATAGCTTTTGCTTCACGTTTCCCAATGTAAACAACAAATTATGATCCGTTTTAACCA
195 GTCAATGGATAGCTTTTGCTTCACGTTT-CCAATGTAAACAACAAATTATGATCTGTTTTAACCA
* *
12084675 AAAATGAAAACAATTCAATTTAAAATCATTTATAAGATTATAAAATCATATAAAGCAAGTAACCA
259 AAAATGAAAACAATTCAATTTAAAATCATTTATAA-ATTATAAAACCAT-TAAAGCAAGTAACAA
* * * *
12084740 GACTTTTGAAGGCATGAGTGACTATAATTGGACTTTTCTTGTCTATGGATAGCTTTTGCTTCACG
322 GGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGAT-GCTTTTGCTTCACG
*
12084805 TTT-TCAATGCACAA-AACAAATTATGATATGTTGTAACAATATATGGAAAAAAATTCAATTGAA
386 TTTCTCAATGCA-AACAACAAATTATGATATGTTTTAACAA-A-AT-GAAAAAAATTCAATTGAA
* *
12084868 AATCATTTATGAA-ATTATAAAATCATTTAATGCAAGTAACAAGGCTTTCGAAAATATAAGTGAC
447 AATCATTTAT-AAGATTATAAAAACATTTAATGCAAGTAACAAGGCTTTC-AAAGTATAA-TGAC
** * *
12084932 TGCAAATAGACTTTTCTTATCAATGGACGGCTTTCACTTCATGTTTTCCTATGTAAAGAACAAAT
509 TATAAATGGACTTTTCTTATCAATGGATGGCTTTCACTTCATGTTTTCCTATGTAAA-AACAAAT
* **
12084997 TATGATTTGTTTTAACCAAAAATGAAAAAAAA
573 TATAATTT-TTTTAATAAAAAATGAAAAAAAA
12085029 ATATGTCAAA
Statistics
Matches: 1031, Mismatches: 186, Indels: 134
0.76 0.14 0.10
Matches are distributed among these distances:
658 3 0.00
659 23 0.02
660 33 0.03
661 8 0.01
662 79 0.08
663 351 0.34
664 20 0.02
665 4 0.00
668 2 0.00
673 1 0.00
675 79 0.08
676 95 0.09
677 21 0.02
678 192 0.19
679 16 0.02
680 49 0.05
681 5 0.00
682 31 0.03
683 19 0.02
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.34
Consensus pattern (659 bp):
AGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTTTGCTTCACGTTTCTCCATTGCAAAC
AATAATTATGATATGTTTTAACCAAAAATAAAACAATTTTAATTTAAAATCATTTATAAAGTTAT
AAAACCACTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTG
TCAATGGATAGCTTTTGCTTCACGTTTCCAATGTAAACAACAAATTATGATCTGTTTTAACCAAA
AATGAAAACAATTCAATTTAAAATCATTTATAAATTATAAAACCATTAAAGCAAGTAACAAGGCT
TTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGCTTTTGCTTCACGTTTCT
CAATGCAAACAACAAATTATGATATGTTTTAACAAAATGAAAAAAATTCAATTGAAAATCATTTA
TAAGATTATAAAAACATTTAATGCAAGTAACAAGGCTTTCAAAGTATAATGACTATAAATGGACT
TTTCTTATCAATGGATGGCTTTCACTTCATGTTTTCCTATGTAAAAACAAATTATAATTTTTTTA
ATAAAAAATGAAAAAAAACTCAACTTAAAATCATTTATAAGACGATAACACTAAAGGACTGTTTC
AAAGACATG
Found at i:12086016 original size:30 final size:28
Alignment explanation
Indices: 12085964--12086023 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
12085954 GTCTATGGGC
* *
12085964 AATTTTTCAGTTTTTTGGGCAAAAATGT
1 AATTTTTCACTTTTTGGGGCAAAAATGT
*
12085992 AATTTTTCACTTTTATGGGGGCAAAAGTGT
1 AATTTTTCACTTTT-T-GGGGCAAAAATGT
12086022 AA
1 AA
12086024 ATTTCAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 13 0.48
29 1 0.04
30 13 0.48
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (28 bp):
AATTTTTCACTTTTTGGGGCAAAAATGT
Found at i:12089934 original size:13 final size:13
Alignment explanation
Indices: 12089916--12089940 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
12089906 ATTTTTAAAA
12089916 ATTTTATAAAATT
1 ATTTTATAAAATT
12089929 ATTTTATAAAAT
1 ATTTTATAAAAT
12089941 CCCATTTTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATTTTATAAAATT
Found at i:12094495 original size:329 final size:328
Alignment explanation
Indices: 12093884--12095880 Score: 1202
Period size: 341 Copynumber: 6.0 Consensus size: 328
12093874 CTAAGCTTTC
* ** * * * * * *
12093884 GAAGTCATGAGTGACTATAAATATTCTTTTCTTGTCAATGGATGTTTTTTGCTTGACATTTCCTG
1 GAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATAGATGGTTTTCGCTTCACGTTTCCTT
* * * * * * * **
12093949 ATGTAAACATCAAATTGTGATCTATTTTAACCAAAAATAAAAAAAAATTCAACTTATAATTGTTT
66 ATGCAAACAACAAATTATGATCTATTTTAACCAAAAAT-AGAAAACATTCAATTTAAAATCATTT
* * *
12094014 ATAGGATTATAAAACCATTTAGAGCGAGTAACAAGGCTTTTGAAA-CCATGAA-TGACTATAAAA
130 ATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTTGAAAGCC-T-AAGTGACTAT-AAA
* * * ** *
12094077 TGGACTTTTCATGTCAATAGATGGCTTTTGCTTCACGTTTCCCAATGCAAAACATTAAATTGTGG
192 TGGACTTTTCTTGTCAATAGATGACTTTCGCTTCACGTTTCCCAATGC-AAACAACAAATTATGG
*
12094142 TATGATTTAACCAAAAAT-GAAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAATAGTAT
256 TCTG-TTTAACCAAAAATAGAAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAA-AGTAT
12094206 TTAAAG-TGA
319 TTAAAGATGA
* * * * *
12094215 GAAGGCATGAGTGTCTATAGATAGA-TCTTTCTTGCCAATAGATCGTTTTCGCTTGACGTTT-CT
1 GAAGGCATGAGTGACTATAAATAGACT-TTTCTTGTCAATAGATGGTTTTCGCTTCACGTTTCCT
* *
12094278 CACTGCAAACAACAAATTATGATCTATTTTAACCAAAAATAGAAAACACTCAATTTAAAATCATT
65 TA-TGCAAACAACAAATTATGATCTATTTTAACCAAAAATAGAAAACATTCAATTTAAAATCATT
* * *
12094343 TATAAGATTACAAAATCATTTAAAGCAAGTAACAAGG-TTTTCGAAAGCCTAAGTGACTATAGAT
129 TATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTT-GAAAGCCTAAGTGACTATAAAT
* * ***
12094407 GGACTTTTCTTGTCAATAGATGACTTTCGCTTCACGTTTCCTAATGCAAACATCAAATTACAATC
193 GGACTTTTCTTGTCAATAGATGACTTTCGCTTCACGTTTCCCAATGCAAACAACAAATTATGGTC
** * * * * *
12094472 TGTTCTAAGTAAAAATAG--AAAAAAACTCAAATTAAAATCA--TAAAACTATT-TAAAGCAAGT
258 TGTT-TAACCAAAAATAGAAAAAAAAATTCAACTTAAAATCATTTATAA-GATTATAAAG-TA-T
** * **
12094532 AACAAAGCTTTT
319 -TTAAAG-ATGA
* * * * * *
12094544 GAAGGCATAAGTGAATATAAATGGACTTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTCCTT
1 GAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATAGATGGTTTTCGCTTCACGTTTCCTT
* * *
12094609 ATGCAAACAACAAATTATGATCT-GTTTAACCAAATAT-GAAAACGAATTCAATTTAAAATTATT
66 ATGCAAACAACAAATTATGATCTATTTTAACCAAAAATAGAAAAC--ATTCAATTTAAAATCATT
* * * * * * * *
12094672 TATAAGAATATAAAATCATTTAATGCAAGTAACAACGCTTTCG-AAGGCAAGAGTGATTATAAAT
129 TATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTTGAAAGCCTA-AGTGACTATAAAT
* * * * * * * *
12094736 GGAGTTTTCTTATCAAT-GAGTTATTTTCACTTCATGTTTCCCAATGAAAACAACAAAATATGGT
193 GGACTTTTCTTGTCAATAGA-TGACTTTCGCTTCACGTTTCCCAATGCAAACAACAAATTATGGT
* * * * * *
12094800 CTATTTGAACCAAAAA-AGAGAAAAACAATTCAACTCAAAATCATTTATATGACTATAAAATCAT
257 CTGTTT-AACCAAAAATAGA-AAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAGT-AT
*
12094864 TTAAAATGAATAACTAGGTTTTC
319 TT-AAA-G----A-T--G----A
* * * *
12094887 GAAGGCATGAGTAACTATAAATGGACTTTTCTTGTCAATAGGTGGTTTTCATGC--CACGTTTTC
1 GAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATAGATGGTTTTC--GCTTCACGTTTCC
* * *
12094950 TTATGCAATCATCAAATTATGATCTATTTTAACCAAAAATAGAAAA-ATTCAATATAAAATCATT
64 TTATGCAAACAACAAATTATGATCTATTTTAACCAAAAATAGAAAACATTCAATTTAAAATCATT
* * * *
12095014 TATAAGATTAT-AAACCATTTAAAGCGACTAACAAGGCTTTTGAAGGCATAAGTGACTATAAATG
129 TATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTTGAAAGCCTAAGTGACTATAAATG
* * * * * *** * *
12095078 GACGTTTATTGTCAATGGATGGCTTTCGCTTCATGTTTCTTGATGCAAACAACAAATTATGATTT
194 GACTTTTCTTGTCAATAGATGACTTTCGCTTCACGTTTCCCAATGCAAACAACAAATTATGGTCT
* * * ** * * *
12095143 GTTTCAACCAATAAT-GAAAATAAATTTTGACTTAAAATTATTTATCAGACTGTA-AAACTATTT
259 GTTT-AACCAAAAATAGAAAAAAAAATTCAACTTAAAATCATTTATAAGA-T-TATAAAGTATTT
*
12095206 AAAGCAAATAA
321 AAAG---ATGA
** * * * * * * * ***
12095217 CTATGCTTTCAAAGGTCTATGACTATAAATGGACTTTTCTTGCCCATGGATCACTTTCGCTTCAC
1 GAAGGC-AT--GA-G----TGACTATAAATAGACTTTTCTTGTCAATAGATGGTTTTCGCTTCAC
* * * * * * *
12095282 GTTT-CTCAATACAAACATCAAATTGTGATTTGTTTTAACTAAAAAT-GAAAACCAAATTCAATT
58 GTTTCCT-TATGCAAACAACAAATTATGATCTATTTTAACCAAAAATAGAAAA-C--ATTCAATT
* * * * * * * ** *
12095345 CAAAATTATTTATAAGATTATAAAATCATTTGAAGCGAGTAACAAGGCTTTCGAAGGTTTGAGTG
119 TAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTTGAAAGCCTAAGTG
* * * * * ** * *
12095410 ACTACAAATGGACTTTTCTTGTCAGTGGATGGCTTTCGCTTCATGTTAT--TGATGCAGACTGA-
184 ACTATAAATGGACTTTTCTTGTCAATAGATGACTTTCGCTTCACGTT-TCCCAATGCAAAC-AAC
* * * * *
12095472 AAATTATGATCTATTTTAACAAAAAATAG--AAAAAAATTTAATTTAAAATCATTTATAAGATTA
247 AAATTATGGTCT-GTTTAACCAAAAATAGAAAAAAAAATTCAACTTAAAATCATTTATAAGATTA
* *
12095535 TAAAACTATTTAAAACGAGTAACAA
311 T-AAAGTATTT-AAA-GA-T---GA
* * * * * * *
12095560 GGCTTTCAAAGGTATGAGTGACTAGAGATGGACTTTTCTTGTCAATGGATGGTTGTCGCTTCATG
1 -G------AAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATAGATGGTTTTCGCTTCACG
** * * * * **
12095625 TTTCCCGATGTAAACAACAAATTATAATCGACTTTAACCAAAAATGAGAAAGA-ATTCAATTGGA
59 TTTCCTTATGCAAACAACAAATTATGATCTATTTTAACCAAAAAT-AGAAA-ACATTCAATTTAA
* * ** * ** * * * *
12095689 AATTATTTGTAAGATTATAAAACCATTTAAAGTGACTAA-TTGGGTTTCTGAAGGCATAAATGAC
122 AATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTT-TGAAAGCCTAAGTGAC
* * * * * * *
12095753 TATAAATGGACTTTTCTTATCAATGGGTGGCTTTTGC-TCAACGTTTTCCAATGCAAACATCAAA
186 TATAAATGGACTTTTCTTGTCAATAGATGACTTTCGCTTC-ACGTTTCCCAATGCAAACAACAAA
* * ** * * * * * *
12095817 TTATGATATGTTTTAACTGAAAAT-G-GAAAAAAGTTTAATTTAAAATCATTTTTAAAATTATAA
250 TTATGGTCTG-TTTAACCAAAAATAGAAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAA
12095880 A
314 A
12095881 ACCACTTAAT
Statistics
Matches: 1300, Mismatches: 271, Indels: 180
0.74 0.15 0.10
Matches are distributed among these distances:
324 2 0.00
325 8 0.01
326 4 0.00
327 32 0.02
328 45 0.03
329 244 0.19
330 76 0.06
331 103 0.08
332 6 0.00
333 10 0.01
334 1 0.00
336 3 0.00
337 10 0.01
338 73 0.06
339 5 0.00
340 70 0.05
341 253 0.19
342 248 0.19
343 79 0.06
344 16 0.01
345 7 0.01
346 1 0.00
347 1 0.00
349 1 0.00
350 2 0.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.34
Consensus pattern (328 bp):
GAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATAGATGGTTTTCGCTTCACGTTTCCTT
ATGCAAACAACAAATTATGATCTATTTTAACCAAAAATAGAAAACATTCAATTTAAAATCATTTA
TAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTTGAAAGCCTAAGTGACTATAAATGGA
CTTTTCTTGTCAATAGATGACTTTCGCTTCACGTTTCCCAATGCAAACAACAAATTATGGTCTGT
TTAACCAAAAATAGAAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAGTATTTAAAGA
TGA
Found at i:12095280 original size:170 final size:170
Alignment explanation
Indices: 12093820--12096176 Score: 1299
Period size: 170 Copynumber: 14.0 Consensus size: 170
12093810 GAGTCGTGAC
* * * * **
12093820 AAAATATTAACTTAAAATCATTTATCAA-ATTGTAAAACTATTTAAAGGGAACAACTAA-GCTTT
1 AAAAT-TTAAATTAAAATTATTTAT-AAGATTATAAAACTATTTAAAGCGAGTAAC-AAGGCTTT
* *** ** * *
12093883 CGAA-GTCATGAGTGACTATAAATATTCTTTTCTTGTCAATGGATGTTTTTTGCTTGACAT-TTC
63 CAAAGGT-ATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTT--CATGTTT
* * * * * * *
12093946 CT-GATGTAAACATCAAATTGTGATCTATTTTAACCAAAAATAAAAA
125 CTCGATGCAAACAACAAATTATGATTTGTTTTAACAAAAAAT-GAAA
* * * * * * * *
12093992 AAAATTCAACTTATAATTGTTTATAGGATTATAAAACCATTTAGAGCGAGTAACAAGGCTTTTGA
1 AAAATTTAAATTAAAATTATTTATAAGATTATAAAACTATTTAAAGCGAGTAACAAGGC-TTTCA
** * * * * * * *
12094057 AA-CCATGAATGACTATAAAATGGACTTTTCATGTCAATAGATGGCTTTTGCTTCACGTTTCCCA
65 AAGGTATGAGTGACTAT-AAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCG
** * * * * *
12094121 ATGCAAAACATTAAATTGTGGTATGATTTAACCAAAAATGAAAAA
129 ATGC-AAACAACAAATTATGATTTGTTTTAACAAAAAATG--AAA
* * * * * *
12094166 AAAATTCAACTTAAAATCATTTATAAGATTATAATAGTATTTAAAGTGAG----AAGG----C--
1 AAAATTTAAATTAAAATTATTTATAAGATTATAAAACTATTTAAAGCGAGTAACAAGGCTTTCAA
* * * * * * * * *
12094221 ----ATGAGTGTCTATAGATAGA-TCTTTCTTGCCAATAGATCGTTTTCGCTTGACGTTTCTC-A
66 AGGTATGAGTGACTATAAATGGACT-TTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGA
* * *
12094280 CTGCAAACAACAAATTATGATCTATTTTAACCAAAAAT-AGAA
130 -TGCAAACAACAAATTATGATTTGTTTTAACAAAAAATGA-AA
* * * * * * * *
12094322 AACACTCAATTTAAAATCATTTATAAGATTACAAAA-TCATTTAAAGCAAGTAACAAGGTTTTCG
1 AAAATTTAAATTAAAATTATTTATAAGATTATAAAACT-ATTTAAAGCGAGTAACAAGGCTTTC-
* * * * *
12094386 AAAGCCTA--AGTGACTATAGATGGACTTTTCTTGTCAATAGATGACTTTCGCTTCACGTTTC-C
64 AAAG-GTATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTC
* * ** * * ** *
12094448 TAATGCAAACATCAAATTACAATCTGTTCTAAGTAAAAAT--AG
128 -GATGCAAACAACAAATTATGATTTGTTTTAACAAAAAATGAAA
* * * * * **
12094490 AAAA---AAACT-CAA--A-TTA-AA-ATCATAAAACTATTTAAAGCAAGTAACAAAGCTTTTGA
1 AAAATTTAAATTAAAATTATTTATAAGATTATAAAACTATTTAAAGCGAGTAACAAGGCTTTCAA
* * * * * *
12094546 AGGCATAAGTGAATATAAATGGACTTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTC-CTTA
66 AGGTATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTC-GA
* * *
12094610 TGCAAACAACAAATTATGATCTG-TTTAACCAAATATGAAA
130 TGCAAACAACAAATTATGATTTGTTTTAACAAAAAATGAAA
* * * * * * *
12094650 ACGAATTCAATTTAAAATTATTTATAAGAATATAAAA-TCATTTAATGCAAGTAACAACGCTTTC
1 A-AAATTTAAATTAAAATTATTTATAAGATTATAAAACT-ATTTAAAGCGAGTAACAAGGCTTTC
* * * * * * *** * *
12094714 GAAGGCAAGAGTGATTATAAATGGAGTTTTCTTATCAAT-GAGTTATTTTCACTTCATGTTTCCC
64 AAAGGTATGAGTGACTATAAATGGACTTTTCTTGTCAATGGA-TGGCTTTCGCTTCATGTTTCTC
* * * * * * * *
12094778 AATGAAAACAACAAAATATGGTCTATTTGAACCAAAAAAGAGAAA
128 GATGCAAACAACAAATTATGATTTGTTTTAA-CAAAAAA-TGAAA
* * * * * * ** * * *
12094823 AACAATTCAACTCAAAATCATTTATATGACTATAAAA-TCATTTAAAATGAATAACTAGGTTTTC
1 AA-AATTTAAATTAAAATTATTTATAAGATTATAAAACT-ATTTAAAGCGAGTAACAAGGCTTTC
* * * * *
12094887 GAAGGCATGAGTAACTATAAATGGACTTTTCTTGTCAATAGG-TGGTTTTCATGC--CACGTTT-
64 AAAGGTATGAGTGACTATAAATGGACTTTTCTTGTCAAT-GGATGGCTTTC--GCTTCATGTTTC
* * * * * * *
12094948 TCTTATGCAATCATCAAATTATGATCTATTTTAACCAAAAAT-AGA
126 TC-GATGCAAACAACAAATTATGATTTGTTTTAACAAAAAATGAAA
* * * * **
12094993 AAAA-TTCAATATAAAATCATTTATAAGATTAT-AAACCATTTAAAGCGACTAACAAGGCTTTTG
1 AAAATTTAAAT-TAAAATTATTTATAAGATTATAAAACTATTTAAAGCGAGTAACAAGGCTTTCA
* * * * *
12095056 AAGGCATAAGTGACTATAAATGGACGTTTATTGTCAATGGATGGCTTTCGCTTCATGTTTCTTGA
65 AAGGTATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGA
* * *
12095121 TGCAAACAACAAATTATGATTTGTTTCAACCAATAATGAAA
130 TGCAAACAACAAATTATGATTTGTTTTAACAAAAAATGAAA
* * * * * * * * *
12095162 ATAAATTTTGACTTAAAATTATTTATCAGACTGTAAAACTATTTAAAGCAAATAACTATGCTTTC
1 A-AAA-TTTAAATTAAAATTATTTATAAGATTATAAAACTATTTAAAGCGAGTAACAAGGCTTTC
* * * ** * *
12095227 AAAGGTCT-A-TGACTATAAATGGACTTTTCTTGCCCATGGATCACTTTCGCTTCACGTTTCTCA
64 AAAGGTATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCG
* * * *
12095290 ATACAAACATCAAATTGTGATTTGTTTTAACTAAAAATGAAA
129 ATGCAAACAACAAATTATGATTTGTTTTAACAAAAAATGAAA
* *
12095332 ACCAAA-TTCAATTCAAAATTATTTATAAGATTATAAAA-TCATTTGAAGCGAGTAACAAGGCTT
1 A--AAATTTAAATT-AAAATTATTTATAAGATTATAAAACT-ATTTAAAGCGAGTAACAAGGCTT
* * * *
12095395 TCGAAGGTTTGAGTGACTACAAATGGACTTTTCTTGTCAGTGGATGGCTTTCGCTTCATGTTAT-
62 TCAAAGGTATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTT-TC
* * * *
12095459 T-GATGCAGACTGA-AAATTATGATCTATTTTAACAAAAAATAGAAA
126 TCGATGCAAAC-AACAAATTATGATTTGTTTTAACAAAAAAT-GAAA
* * *
12095504 AAAATTTAATTTAAAATCATTTATAAGATTATAAAACTATTTAAAACGAGTAACAAGGCTTTCAA
1 AAAATTTAAATTAAAATTATTTATAAGATTATAAAACTATTTAAAGCGAGTAACAAGGCTTTCAA
* * *
12095569 AGGTATGAGTGACTAGAGATGGACTTTTCTTGTCAATGGATGG-TTGTCGCTTCATGTTTCCCGA
66 AGGTATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTT-TCGCTTCATGTTTCTCGA
* * * * *
12095633 TGTAAACAACAAATTAT-AATCGACTTTAACCAAAAATGAGAA
130 TGCAAACAACAAATTATGATTTG-TTTTAACAAAAAATGA-AA
* * * * * * * ** *
12095675 AGAA-TTCAATTGGAAATTATTTGTAAGATTATAAAACCATTTAAAGTGACTAA-TTGGGTTTCT
1 AAAATTTAAATT-AAAATTATTTATAAGATTATAAAACTATTTAAAGCGAGTAACAAGGCTTTC-
* * * * * * * *
12095738 GAAGGCATAAATGACTATAAATGGACTTTTCTTATCAATGGGTGGCTTTTGC-TCAACGTTT-TC
64 AAAGGTATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTC-ATGTTTCT-
* * * **
12095801 CAATGCAAACATCAAATTATGATATGTTTTAACTGAAAATGGAAA
127 CGATGCAAACAACAAATTATGATTTGTTTTAACAAAAAAT-GAAA
* * * * * * * * *
12095846 AAAGTTTAATTTAAAATCATTTTTAAAATTATAAAACCACTTAATGCGAGTAACAAAGCTTTCAA
1 AAAATTTAAATTAAAATTATTTATAAGATTATAAAACTATTTAAAGCGAGTAACAAGGCTTTCAA
* ** * * * * **
12095911 AGGCACAAGTGACTATAAATGGACTTTTTTTTTCAATGGATAGCTTTTGCTTCACATTTC-CGGA
66 AGGTATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTC-GA
* * * * *
12095975 TGCAAACATCATATTGTGATCTATTTTAACAAAAAA--AAA
130 TGCAAACAACAAATTATGATTTGTTTTAACAAAAAATGAAA
* * * * * * *
12096014 TAAAGTCAACTTAAAATCATTTATAAAATTATAAAA-TCGTTTAAAGCGAGTAACAAGGC-TT--
1 AAAATTTAAATTAAAATTATTTATAAGATTATAAAACT-ATTTAAAGCGAGTAACAAGGCTTTCA
* * * **
12096075 ----T-TGA--GACTATAGATGGACTTTTATTGTCAATGGATGGCTTTTGCCACATGTTTCTC-A
65 AAGGTATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGA
* * *
12096132 TTGCAAAC-ACCAATTATGATATGTTTTAACCAAAAATGAAA
130 -TGCAAACAACAAATTATGATTTGTTTTAACAAAAAATGAAA
12096173 AAAA
1 AAAA
12096177 CATTTACTTA
Statistics
Matches: 1710, Mismatches: 372, Indels: 219
0.74 0.16 0.10
Matches are distributed among these distances:
155 2 0.00
156 43 0.03
157 23 0.01
158 90 0.05
159 145 0.08
160 20 0.01
161 5 0.00
162 1 0.00
164 6 0.00
165 5 0.00
166 2 0.00
167 5 0.00
168 162 0.09
169 39 0.02
170 437 0.26
171 372 0.22
172 154 0.09
173 153 0.09
174 44 0.03
175 2 0.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.34
Consensus pattern (170 bp):
AAAATTTAAATTAAAATTATTTATAAGATTATAAAACTATTTAAAGCGAGTAACAAGGCTTTCAA
AGGTATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGAT
GCAAACAACAAATTATGATTTGTTTTAACAAAAAATGAAA
Found at i:12095453 original size:342 final size:339
Alignment explanation
Indices: 12094216--12096200 Score: 1560
Period size: 342 Copynumber: 5.9 Consensus size: 339
12094206 TTAAAGTGAG
* * * * * * *
12094216 AAGGCATGAGTGTCTATAGATAGA-TCTTTCTTGCCAATAGATCGTTTTCGCTTGACGTTTCTC-
1 AAGGC-TGAGTGACTATAAATGGACT-TTTCTTGTCAATGGAT-GCTTTCGCTTCACGTTTCTCT
* *
12094279 ACTGCAAACAACAAATTATGATCTATTTTAACCAAAAATAGAAAAC--ACTCAATTTAAAATCAT
63 AATGCAAACAACAAATTATGATCTATTTTAACCAAAAAT-GAAAACAAATTCAA-TTAAAATCAT
* * * * * *
12094342 TTATAAGATTACAAAATCATTTAAAGCAAGTAACAAGGTTTTCGAAAGCCTAAGTGACTATAGAT
126 TTATAAGATTATAAAATCATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATAAGTGACTATAAAT
* * * * * **
12094407 GGACTTTTCTTGTCAATAGATGACTTTCGCTTCACGTTTCCTAATGCAAACATCAAATTACAATC
191 GGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTTAATGCAAACAACAAATTATGATC
** * *
12094472 TG-TTCTAAGTAAAAAT-AGAAAAA---AAC-T-CAA--A-TTA-AA-A-TCATAAAACTATTTA
256 TGTTTC-AACCAAAAATGAAAAAAATTTAACTTAAAATCATTTATAAGACT-ATAAAACTATTTA
* **
12094524 AAGCAAGTAACAAAGCTTTTG
319 AAGCGAGTAACAAAGCTTTCA
* * * *
12094545 AAGGCATAAGTGAATATAAATGGACTTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTC-CTT
1 AAGGC-TGAGTGACTATAAATGGACTTTTCTTGTCAATGGAT-GCTTTCGCTTCACGTTTCTCTA
* * * *
12094609 ATGCAAACAACAAATTATGATCT-GTTTAACCAAATATGAAAACGAATTCAATTTAAAATTATTT
64 ATGCAAACAACAAATTATGATCTATTTTAACCAAAAATGAAAACAAATTCAA-TTAAAATCATTT
* * * * *
12094673 ATAAGAATATAAAATCATTTAATGCAAGTAACAACGCTTTCGAAGGCA-AGAGTGATTATAAATG
128 ATAAGATTATAAAATCATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATA-AGTGACTATAAATG
* * *** * ** * * *
12094737 GAGTTTTCTTATCAAT-GAGTTATTTTCACTTCATGTTTCCCAATGAAAACAACAAAATATGGTC
192 GACTTTTCTTGTCAATGGA-TGGCTTTCGCTTCATGTTTCTTAATGCAAACAACAAATTATGATC
* * * * * *
12094801 TATTTGAACCAAAAAAGAGAAAAACAATTCAACTCAAAATCATTTATATGACTATAAAA-TCATT
256 TGTTTCAACC-AAAAA-TGAAAAA-AATTTAACTTAAAATCATTTATAAGACTATAAAACT-ATT
** * * * * *
12094865 TAAAATGAATAACTAGGTTTTCG
317 TAAAGCGAGTAACAAAGCTTTCA
* *
12094888 AAGGCATGAGTAACTATAAATGGACTTTTCTTGTCAATAGG-TGGTTTTCATGC--CACGTTT-T
1 AAGGC-TGAGTGACTATAAATGGACTTTTCTTGTCAAT-GGAT-GCTTTC--GCTTCACGTTTCT
* * * *
12094949 CTTATGCAATCATCAAATTATGATCTATTTTAACCAAAAAT-AGAA-AAATTCAATATAAAATCA
61 CTAATGCAAACAACAAATTATGATCTATTTTAACCAAAAATGAAAACAAATTCAAT-TAAAATCA
* * *
12095012 TTTATAAGATTAT-AAACCATTTAAAGCGACTAACAAGGCTTTTGAAGGCATAAGTGACTATAAA
125 TTTATAAGATTATAAAATCATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATAAGTGACTATAAA
* * *
12095076 TGGACGTTTATTGTCAATGGATGGCTTTCGCTTCATGTTTCTTGATGCAAACAACAAATTATGAT
190 TGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTTAATGCAAACAACAAATTATGAT
* * * * * *
12095141 TTGTTTCAACCAATAATGAAAATAAATTTTGACTTAAAATTATTTATCAGACTGTAAAACTATTT
255 CTGTTTCAACCAAAAATGAAAA-AAA-TTTAACTTAAAATCATTTATAAGACTATAAAACTATTT
* * * *
12095206 AAAGCAAATAACTATGCTTTCA
318 AAAGCGAGTAACAAAGCTTTCA
* * *
12095228 AAGGTCT-A-TGACTATAAATGGACTTTTCTTGCCCATGGATCACTTTCGCTTCACGTTTCTC-A
1 AAGG-CTGAGTGACTATAAATGGACTTTTCTTGTCAATGGAT-GCTTTCGCTTCACGTTTCTCTA
* * * * * * *
12095290 ATACAAACATCAAATTGTGATTTGTTTTAACTAAAAATGAAAACCAAATTCAATTCAAAATTATT
64 ATGCAAACAACAAATTATGATCTATTTTAACCAAAAATGAAAA-CAAATTCAATT-AAAATCATT
* ** * *
12095355 TATAAGATTATAAAATCATTTGAAGCGAGTAACAAGGCTTTCGAAGGTTTGAGTGACTACAAATG
127 TATAAGATTATAAAATCATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATAAGTGACTATAAATG
* * * * *
12095420 GACTTTTCTTGTCAGTGGATGGCTTTCGCTTCATG-TTATTGATGCAGACTGA-AAATTATGATC
192 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTTAATGCAAAC-AACAAATTATGATC
* * * * *
12095483 TATTTTAACAAAAAATAGAAAAAAATTTAATTTAAAATCATTTATAAGATTATAAAACTATTTAA
256 TGTTTCAACCAAAAAT-GAAAAAAATTTAACTTAAAATCATTTATAAGACTATAAAACTATTTAA
* *
12095548 AACGAGTAACAAGGCTTTCA
320 AGCGAGTAACAAAGCTTTCA
* * * * * **
12095568 AAGGTATGAGTGACTAGAGATGGACTTTTCTTGTCAATGGATGGTTGTCGCTTCATGTTTC-CCG
1 AAGG-CTGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGCTT-TCGCTTCACGTTTCTCTA
* * * * * * *
12095632 ATGTAAACAACAAATTATAATCGACTTTAACCAAAAATGAGAAA-GAATTCAATTGGAAATTATT
64 ATGCAAACAACAAATTATGATCTATTTTAACCAAAAATGA-AAACAAATTCAATT-AAAATCATT
* * * * ** * *
12095696 TGTAAGATTATAAAACCATTTAAAGTGACTAA-TTGGGTTTCTGAAGGCATAAATGACTATAAAT
127 TATAAGATTATAAAATCATTTAAAGCGAGTAACAAGGCTTTC-GAAGGCATAAGTGACTATAAAT
* * * * * *
12095760 GGACTTTTCTTATCAATGGGTGGCTTTTGC-TCAACGTTT-TCCAATGCAAACATCAAATTATGA
191 GGACTTTTCTTGTCAATGGATGGCTTTCGCTTC-ATGTTTCT-TAATGCAAACAACAAATTATGA
* * ** * * * * * * *
12095823 TATGTTTTAACTGAAAATGGAAAAAAGTTTAATTTAAAATCATTTTTAAAATTATAAAACCACTT
254 TCTGTTTCAACCAAAAAT-GAAAAAAATTTAACTTAAAATCATTTATAAGACTATAAAACTATTT
*
12095888 AATGCGAGTAACAAAGCTTTCA
318 AAAGCGAGTAACAAAGCTTTCA
** * * * * **
12095910 AAGGCACAAGTGACTATAAATGGACTTTTTTTTTCAATGGATAGCTTTTGCTTCACATTTC-CGG
1 AAGGC-TGAGTGACTATAAATGGACTTTTCTTGTCAATGGAT-GCTTTCGCTTCACGTTTCTCTA
* * * * *
12095974 ATGCAAACATCATATTGTGATCTATTTTAA-CAAAAA--AAAATAAAGTCAACTTAAAATCATTT
64 ATGCAAACAACAAATTATGATCTATTTTAACCAAAAATGAAAACAAATTCAA-TTAAAATCATTT
* * * *
12096036 ATAAAATTATAAAATCGTTTAAAGCGAGTAACAAGGCTTT--------T--GAGACTATAGATGG
128 ATAAGATTATAAAATCATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATAAGTGACTATAAATGG
* * ** * * * *
12096091 ACTTTTATTGTCAATGGATGGCTTTTGCCACATGTTTCTCATTGCAAAC-ACCAATTATGATATG
193 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTTAATGCAAACAACAAATTATGATCTG
*
12096155 TTTTAACCAAAAATGAAAAAAACATTT-ACTTAAAAATCATTTATAA
258 TTTCAACCAAAAATG-AAAAAA-ATTTAACTT-AAAATCATTTATAA
12096201 ATGGATGGAC
Statistics
Matches: 1331, Mismatches: 259, Indels: 132
0.77 0.15 0.08
Matches are distributed among these distances:
327 7 0.01
328 50 0.04
329 257 0.19
330 10 0.01
331 1 0.00
332 4 0.00
333 2 0.00
336 5 0.00
337 2 0.00
338 74 0.06
339 53 0.04
340 127 0.10
341 269 0.20
342 347 0.26
343 107 0.08
344 15 0.01
345 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.34
Consensus pattern (339 bp):
AAGGCTGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGCTTTCGCTTCACGTTTCTCTAAT
GCAAACAACAAATTATGATCTATTTTAACCAAAAATGAAAACAAATTCAATTAAAATCATTTATA
AGATTATAAAATCATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATAAGTGACTATAAATGGACT
TTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTTAATGCAAACAACAAATTATGATCTGTTT
CAACCAAAAATGAAAAAAATTTAACTTAAAATCATTTATAAGACTATAAAACTATTTAAAGCGAG
TAACAAAGCTTTCA
Found at i:12095879 original size:171 final size:169
Alignment explanation
Indices: 12094215--12096075 Score: 1430
Period size: 170 Copynumber: 11.0 Consensus size: 169
12094205 TTTAAAGTGA
* * * * * * * * *
12094215 GAAGGCATGAGTGTCTATAGATAGA-TCTTTCTTGCCAATAGATCGTTTTCGCTTGACG-TTTCT
1 GAAGGCATAAGTGACTATAAATGGACT-TTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTTC-
* * * *
12094278 C-ACTGCAAACAACAAATTATGATCTATTTTAACCAAAAATAGAAAACACTCAATTTAAAATCAT
64 CGA-TGCAAACATCAAATTATGATCTGTTTTAA-CAAAAATAGAAAAAATTCAATTTAAAATCAT
* * * *
12094342 TTATAAGATTACAAAATCATTTAAAGCAAGTAACAAGGTTTTC
127 TTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTC
* * * * *
12094385 GAAAGCCTAAGTGACTATAGATGGACTTTTCTTGTCAATAGATGACTTTCGCTTCACG-TTTCCT
1 GAAGGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTTCC-
* ** * * * *
12094449 AATGCAAACATCAAATTACAATCTGTTCTAAGTAAAAATAG-AAAAA---AA-CT-CAA--A-TT
65 GATGCAAACATCAAATTATGATCTGTTTTAA-CAAAAATAGAAAAAATTCAATTTAAAATCATTT
* * * * *
12094505 A-AA-ATCATAAAACTATTTAAAGCAAGTAACAAAGCTTTT
129 ATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTC
* *
12094544 GAAGGCATAAGTGAATATAAATGGACTTTTCTTGTCAATGGATGGCTTTCACTTCACG-TTTCCT
1 GAAGGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTTCC-
* * * *
12094608 TATGCAAACAACAAATTATGATCTG-TTTAAC-CAAATATGAAAACGAATTCAATTTAAAATTAT
65 GATGCAAACATCAAATTATGATCTGTTTTAACAAAAATA-GAAAA--AATTCAATTTAAAATCAT
* * * * *
12094671 TTATAAGAATATAAAATCATTTAATGCAAGTAACAACGCTTTC
127 TTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTC
* * * *** * * *
12094714 GAAGGCA-AGAGTGATTATAAATGGAGTTTTCTTATCAAT-GAGTTATTTTCACTTCATGTTTCC
1 GAAGGCATA-AGTGACTATAAATGGACTTTTCTTGTCAATGGA-TGGCTTTCGCTTCACGTTTTC
* * * * * * * * * *
12094777 CAATGAAAACAACAAAATATGGTCTATTTGAACCAAAAAAGAGAAAAACAATTCAACTCAAAATC
64 CGATGCAAACATCAAATTATGATCTGTTTTAA-C-AAAAATAG-AAAA-AATTCAATTTAAAATC
* * * ** * * *
12094842 ATTTATATGACTATAAAATCATTTAAAATGAATAACTAGGTTTTC
125 ATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTC
* * *
12094887 GAAGGCATGAGTAACTATAAATGGACTTTTCTTGTCAATAGG-TGGTTTTCATGC--CACGTTTT
1 GAAGGCATAAGTGACTATAAATGGACTTTTCTTGTCAAT-GGATGGCTTTC--GCTTCACGTTTT
** * * *
12094949 CTTATGCAATCATCAAATTATGATCTATTTTAACCAAAAATAG-AAAAATTCAATATAAAATCAT
63 CCGATGCAAACATCAAATTATGATCTGTTTTAA-CAAAAATAGAAAAAATTCAATTTAAAATCAT
* *
12095013 TTATAAGATTAT-AAACCATTTAAAGCGACTAACAAGGCTTTT
127 TTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTC
* * * *
12095055 GAAGGCATAAGTGACTATAAATGGACGTTTATTGTCAATGGATGGCTTTCGCTTCATG-TTTCTT
1 GAAGGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTTC-C
* * * * ** * *
12095119 GATGCAAACAACAAATTATGATTTGTTTCAACCAATAAT-GAAAATAAATTTTGACTTAAAATTA
65 GATGCAAACATCAAATTATGATCTGTTTTAA-CAAAAATAG-AAA-AAA-TTCAATTTAAAATCA
* * * * * * * *
12095183 TTTATCAGACTGTAAAACTATTTAAAGCAAATAACTATGCTTTC
126 TTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTC
* * * **
12095227 AAAGGTC-T-A-TGACTATAAATGGACTTTTCTTGCCCATGGATCACTTTCGCTTCACG-TTTCT
1 GAAGG-CATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTTC-
* * * * * *
12095288 CAATACAAACATCAAATTGTGATTTGTTTTAACTAAAAAT-GAAAACCAAATTCAATTCAAAATT
64 CGATGCAAACATCAAATTATGATCTGTTTTAAC-AAAAATAG-AAA--AAATTCAATTTAAAATC
* *
12095352 ATTTATAAGATTATAAAATCATTTGAAGCGAGTAACAAGGCTTTC
125 ATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTC
** * * * *
12095397 GAAGGTTTGAGTGACTACAAATGGACTTTTCTTGTCAGTGGATGGCTTTCGCTTCATGTTATT--
1 GAAGGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTT-TTCC
* * * *
12095460 GATGCAGAC-TGAAAATTATGATCTATTTTAACAAAAAATAGAAAAAAATTTAATTTAAAATCAT
65 GATGCAAACAT-CAAATTATGATCTGTTTTAAC-AAAAATAG-AAAAAATTCAATTTAAAATCAT
* *
12095524 TTATAAGATTATAAAACTATTTAAAACGAGTAACAAGGCTTTC
127 TTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTC
* * * * * * *
12095567 AAAGGTATGAGTGACTAGAGATGGACTTTTCTTGTCAATGGATGG-TTGTCGCTTCATGTTTCCC
1 GAAGGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTT-TCGCTTCACGTTTTCC
* * * * * ** *
12095631 GATGTAAACAACAAATTATAATC-GACTTTAACCAAAAATGAGAAAGAATTCAATTGGAAATTAT
65 GATGCAAACATCAAATTATGATCTG-TTTTAA-CAAAAAT-AGAAAAAATTCAATTTAAAATCAT
* * * ** *
12095695 TTGTAAGATTATAAAACCATTTAAAGTGACTAA-TTGGGTTTC
127 TTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTC
* * * *
12095737 TGAAGGCATAAATGACTATAAATGGACTTTTCTTATCAATGGGTGGCTTTTGC-TCAACGTTTTC
1 -GAAGGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTC-ACGTTTTC
* * * * *
12095801 CAATGCAAACATCAAATTATGATATGTTTTAACTGAAAATGGAAAAAAGTTTAATTTAAAATCAT
64 CGATGCAAACATCAAATTATGATCTGTTTTAAC-AAAAATAGAAAAAA-TTCAATTTAAAATCAT
* * * * *
12095866 TTTTAAAATTATAAAACCACTTAATGCGAGTAACAAAGCTTTC
127 TTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTC
* * * * * * *
12095909 AAAGGCACAAGTGACTATAAATGGACTTTTTTTTTCAATGGATAGCTTTTGCTTCAC-ATTTCCG
1 GAAGGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTTCC-
* * * * *
12095973 GATGCAAACATCATATTGTGATCTATTTTAACAAAAA-A-AAATAAAGTCAACTTAAAATCATTT
65 GATGCAAACATCAAATTATGATCTGTTTTAACAAAAATAGAAA-AAATTCAATTTAAAATCATTT
* * *
12096036 ATAAAATTATAAAATCGTTTAAAGCGAGTAACAAGGCTTT
129 ATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTT
12096076 TGAGACTATA
Statistics
Matches: 1349, Mismatches: 276, Indels: 134
0.77 0.16 0.08
Matches are distributed among these distances:
156 5 0.00
157 1 0.00
158 7 0.01
159 107 0.08
160 4 0.00
161 3 0.00
162 1 0.00
163 2 0.00
164 3 0.00
165 3 0.00
166 4 0.00
167 8 0.01
168 156 0.12
169 44 0.03
170 446 0.33
171 325 0.24
172 95 0.07
173 123 0.09
174 10 0.01
175 2 0.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (169 bp):
GAAGGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTTCCG
ATGCAAACATCAAATTATGATCTGTTTTAACAAAAATAGAAAAAATTCAATTTAAAATCATTTAT
AAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTC
Found at i:12096533 original size:170 final size:172
Alignment explanation
Indices: 12096205--12096635 Score: 484
Period size: 170 Copynumber: 2.5 Consensus size: 172
12096195 TTATAAATGG
* * *
12096205 ATGGACTTTTCTTATCAATGGATGGCTTCCACTTCACATTTCTCGTTGCAAACAACAAATTATGA
1 ATGGACTTTTCTTATCAATGGATGGCTTCCGCTTCACATTTCTCGATGCAAACAACAAATTATAA
* * *
12096270 TATGTTTTAACAAAAAATGAATGAAAAATTCAAGTTAAAATCACTTATAAGATTATAAAACCATT
66 TATATTTTAACAAAAAATGAATAAAAAATTCAAGTTAAAATCACTTATAAGATTATAAAACCACT
* *
12096335 TAAAGCGAGTAATAAGGCTTTTAAAGGCAAAAGTGACTATAGA
131 TAAAGCGAGTAATAAGGCCTTCAAAGGCAAAAGTGACTATA-A
* * * * *
12096378 A-GGACTTTTCTTGTCAATGGATGGGTTTCGCTTCACATTTCT-GATGCAAATAAGAAATTATAA
1 ATGGACTTTTCTTATCAATGGATGGCTTCCGCTTCACATTTCTCGATGCAAACAACAAATTATAA
* * * *
12096441 TCTATTTT-ACCAAAAATGAA-AAAAATATTCAATTTAAAATCATTTATAA-AGTTATAAAACCA
66 TATATTTTAACAAAAAATGAATAAAAA-ATTCAAGTTAAAATCACTTATAAGA-TTATAAAACCA
* * * *
12096503 CTTAAAGTGAGT-ATCAGAGCCTTCAAAGGCATAAGTGATTATAA
129 CTTAAAGCGAGTAATAAG-GCCTTCAAAGGCAAAAGTGACTATAA
* * * *
12096547 ATGGGCTTCTT-TTCTCAATGGATGGCTTCCGCTTCACATTT-TCCACTACAAACAACAAATTAT
1 ATGGACTT-TTCTTATCAATGGATGGCTTCCGCTTCACATTTCTCGA-TGCAAACAACAAATTAT
* * *
12096610 GACT-TGTTTTAACTAAAAATGAATAA
64 -AATATATTTTAACAAAAAATGAATAA
12096636 GATTATAAAA
Statistics
Matches: 216, Mismatches: 32, Indels: 20
0.81 0.12 0.07
Matches are distributed among these distances:
169 12 0.06
170 107 0.50
171 44 0.20
172 50 0.23
173 3 0.01
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.33
Consensus pattern (172 bp):
ATGGACTTTTCTTATCAATGGATGGCTTCCGCTTCACATTTCTCGATGCAAACAACAAATTATAA
TATATTTTAACAAAAAATGAATAAAAAATTCAAGTTAAAATCACTTATAAGATTATAAAACCACT
TAAAGCGAGTAATAAGGCCTTCAAAGGCAAAAGTGACTATAA
Found at i:12098829 original size:19 final size:19
Alignment explanation
Indices: 12098805--12098851 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
12098795 GGATTTGGTG
* *
12098805 AGAAACCCTCTGCTAGCAA
1 AGAAACCCTCAGCCAGCAA
*
12098824 AGAAACCCTCAGCCAGCTA
1 AGAAACCCTCAGCCAGCAA
12098843 AGAAACCCT
1 AGAAACCCT
12098852 TGGCTATTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.38, C:0.34, G:0.15, T:0.13
Consensus pattern (19 bp):
AGAAACCCTCAGCCAGCAA
Found at i:12100644 original size:171 final size:171
Alignment explanation
Indices: 12099795--12100720 Score: 774
Period size: 172 Copynumber: 5.4 Consensus size: 171
12099785 AAATTCAACT
* * * * * * * *
12099795 TAAAATCATTTAATGCGAGTAACAAAGC-TTCTGAAGGAATGAATAACAATAAATGGACTTTTCT
1 TAAAACCATTTAAAGCAAGTAACAAGGCTTTC-AAAGGAATGAGTGACTATAAATGGACTTTTCT
* * ** * *
12099859 TGTCAATGGATGGCTTTC-CATTCATGTTTCTTGTTGTAAACAACAAATTATGACATGTTTTAAC
65 TGTTAATGGATGGCTTTCGC-TTCATGGTTCCAGATGCAAACAACAAATTATGACATGTTTTAAC
*
12099923 CAAAAATGAAAAAAAAATTCAAT-TCAAAAT-TTTTCATAAGATTA
129 CAAAAATG-AAAAAAAATTCAATCT-AAAATCATTT-ATAAGATTA
* * ** * ** *
12099967 TAAAAACATTTAAA-CTTAA-TAACTAGGCTTTTGAAGGAATGAGTGACTATAGATCTACTTTTG
1 TAAAACCATTTAAAGC--AAGTAACAAGGCTTTCAAAGGAATGAGTGACTATAAATGGACTTTTC
* * * * * *
12100030 TTGCTAATGGATGGCTTTCGCTTAACGCTTCCAGATGCAAACAAAAAATTATGATATAG-TTTAA
64 TTGTTAATGGATGGCTTTCGCTTCATGGTTCCAGATGCAAACAACAAATTATGACAT-GTTTTAA
**
12100094 TGAAAAAT-AAAAAAAATT-AA-CTTAAAATCATTTATAA-ATTTA
128 CCAAAAATGAAAAAAAATTCAATC-TAAAATCATTTATAAGA-TTA
* * * * ** *
12100136 TAAAACCACTTAAA-AAGAGTAATAAGGCCTGAAAAGGAATGAGTGACTATAAATTGACTTTTCT
1 TAAAACCATTTAAAGCA-AGTAACAAGGCTTTCAAAGGAATGAGTGACTATAAATGGACTTTTCT
* * * * * * * * * * *
12100200 GGTCAATAGATGGCTTTCACTTCATGTTTCCCA-CTACAAAC-ACAAATGAAGACTTGTTTTTCA
65 TGTTAATGGATGGCTTTCGCTTCATGGTT-CCAGATGCAAACAACAAATTATGACATG-TTTTAA
* * * *
12100263 CAAAAAATGAATGAAAAATTCAATTTAAAATCATTTATGAGATTA
128 CCAAAAATGAA-AAAAAATTCAATCTAAAATCATTTATAAGATTA
* ** * * *
12100308 TAAAATCATTTAAAGCGAA-TAAGTAGGCTTTCAAATGTATGAGTGACTATAAATGGACTTTCCT
1 TAAAACCATTTAAAGC-AAGTAACAAGGCTTTCAAAGGAATGAGTGACTATAAATGGACTTTTCT
* * ** * * *
12100372 TGTCAATGGGTTTCTTTCG-TGTCAT-GTTTCATGATGCAAACAACAAATTATGACATATTTTTA
65 TGTTAATGGATGGCTTTCGCT-TCATGGTTCCA-GATGCAAACAACAAATTATGACATGTTTTAA
* * *
12100435 CCAAAAATGAAAAAAAAATTCAATTTGAAATCATTTATAAGATCA
128 CCAAAAATG-AAAAAAAATTCAATCTAAAATCATTTATAAGATTA
* * * * * *
12100480 TAAAACCATTTAAAGCAAGTAACAAGGCTTTCGAAGGCATTAGTGACTACAAATGAACTTTTCTA
1 TAAAACCATTTAAAGCAAGTAACAAGGCTTTCAAAGGAATGAGTGACTATAAATGGACTTTTCTT
* * * *
12100545 GTTAATGGATGGCTTTCGTTTCATGGTTGCA-ATGTAAACAACAAATTATGATC-TGTTTTAACG
66 GTTAATGGATGGCTTTCGCTTCATGGTTCCAGATGCAAACAACAAATTATGA-CATGTTTTAACC
* *
12100608 AAAAATGAAAACAACATTCAATCTAATATCATTTATAAGATTA
130 AAAAATGAAAA-AAAATTCAATCTAAAATCATTTATAAGATTA
* * * *
12100651 TAAAAGCATTTAAAGCGAGTAACATGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTT
1 TAAAACCATTTAAAGCAAGTAACAAGGCTTTCAAAGGAATGAGTGACTATAAATGGACTTTTCTT
12100716 GTTAA
66 GTTAA
12100721 CCGATCGCTT
Statistics
Matches: 597, Mismatches: 126, Indels: 63
0.76 0.16 0.08
Matches are distributed among these distances:
167 2 0.00
168 11 0.02
169 98 0.16
170 25 0.04
171 134 0.22
172 300 0.50
173 26 0.04
174 1 0.00
ACGTcount: A:0.40, C:0.13, G:0.14, T:0.33
Consensus pattern (171 bp):
TAAAACCATTTAAAGCAAGTAACAAGGCTTTCAAAGGAATGAGTGACTATAAATGGACTTTTCTT
GTTAATGGATGGCTTTCGCTTCATGGTTCCAGATGCAAACAACAAATTATGACATGTTTTAACCA
AAAATGAAAAAAAATTCAATCTAAAATCATTTATAAGATTA
Found at i:12100812 original size:171 final size:167
Alignment explanation
Indices: 12099795--12100834 Score: 657
Period size: 172 Copynumber: 6.1 Consensus size: 167
12099785 AAATTCAACT
* ** * * * * *
12099795 TAAAATCATTTAATGCGAGTAACAAAGC-TTCTGAAGGAATGAATAACAATAAATGGACTTTTCT
1 TAAAATCATTTAAAGCGAGTAACATGGCTTTC-AAAGGCATGAGTGACTATAAATGGACTTTTCT
* * * ** * ** *
12099859 TGTCAATGGATGGCTTTCCATTCATGTTTCTTGTTGTAAACAACAAATTATGA-CATGTTTTAAC
65 TGTTAATGGATCGCTTT-CGTTCACATTTCCTAATGCAAACAACAAATTATGATC--GTTTTAA-
* *
12099923 CAAAAATGAAAAAAAAATTCAATTCAAAAT-TTTTCATAAGATTA
126 CAAAAATG--AAAAAAATTCAATTTAAAATCATTT-ATAAGATTA
* * * ** * * ** *
12099967 TAAAAACATTTAAA-CTTAATAAC-TAGGCTTTTGAAGGAATGAGTGACTATAGATCTACTTTTG
1 TAAAATCATTTAAAGC-GAGTAACAT-GGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTC
* * * ** * *
12100030 TTGCTAATGGATGGCTTTCGCTTAACGCTTCC-AGATGCAAACAAAAAATTATGAT-ATAGTTTA
64 TTGTTAATGGATCGCTTTCG-TTCACATTTCCTA-ATGCAAACAACAAATTATGATCGT--TTTA
* * *
12100093 ATGAAAAATAAAAAAAATT-AACTTAAAATCATTTATAA-ATTTA
125 A-CAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAGA-TTA
* * ** * * * ** * * *
12100136 TAAAACCACTTAAAAAGAGTAATAAGGCCTGAAAAGGAATGAGTGACTATAAATTGACTTTTCTG
1 TAAAATCATTTAAAGCGAGTAACATGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTT
* * * * ** * * * * * * *
12100201 GTCAATAGATGGCTTTCACTTCATGTTTCCCACTACAAAC-ACAAATGAAGACTTGTTTTTCACA
66 GTTAATGGATCGCTTTC-GTTCACATTTCCTAATGCAAACAACAAATTATGA-TCG-TTTTAAC-
*
12100265 AAAAATGAATGAAAAATTCAATTTAAAATCATTTATGAGATTA
127 AAAAATGAA--AAAAATTCAATTTAAAATCATTTATAAGATTA
* * * * *
12100308 TAAAATCATTTAAAGCGAATAA-GTAGGCTTTCAAATGTATGAGTGACTATAAATGGACTTTCCT
1 TAAAATCATTTAAAGCGAGTAACAT-GGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCT
* * ** ** * * ** *
12100372 TGTCAATGGGTTTCTTTCGTGTCATGTTTCATGATGCAAACAACAAATTATGACATATTTTTACC
65 TGTTAATGGATCGCTTTCGT-TCACATTTCCTAATGCAAACAACAAATTATG--ATCGTTTTAAC
* *
12100437 AAAAATGAAAAAAAAATTCAATTTGAAATCATTTATAAGATCA
127 AAAAATG--AAAAAAATTCAATTTAAAATCATTTATAAGATTA
* * * * * * * *
12100480 TAAAACCATTTAAAGCAAGTAACAAGGCTTTCGAAGGCATTAGTGACTACAAATGAACTTTTCTA
1 TAAAATCATTTAAAGCGAGTAACATGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTT
* * * *
12100545 GTTAATGGATGGCTTTCGTT-TCATGGTTGC-AATGTAAACAACAAATTATGATCTGTTTTAACG
66 GTTAATGGATCGCTTTCGTTCACAT--TTCCTAATGCAAACAACAAATTATGATC-GTTTTAAC-
* *
12100608 AAAAATGAAAACAACATTCAATCTAATATCATTTATAAGATTA
127 AAAAATGAAAA-AA-ATTCAATTTAAAATCATTTATAAGATTA
*
12100651 TAAAAGCATTTAAAGCGAGTAACATGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTT
1 TAAAATCATTTAAAGCGAGTAACATGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTT
** * * * * *
12100716 GTTAACCGATCGCTTTCAGTTCACATTTCCTAACGGAAACATCCAACTATGATTCGTTTTAACAA
66 GTTAATGGATCGCTTTC-GTTCACATTTCCTAATGCAAACAACAAATTATGA-TCGTTTTAACAA
* * **
12100781 GAAATGAAAGATATTTTGATTTAAAATCATTTATAAGATTA
129 -AAATGAAA-AAAATTCAATTTAAAATCATTTATAAGATTA
*
12100822 TAAGATCATTTAA
1 TAAAATCATTTAA
12100835 GATATTAACT
Statistics
Matches: 669, Mismatches: 157, Indels: 85
0.73 0.17 0.09
Matches are distributed among these distances:
168 9 0.01
169 109 0.16
170 23 0.03
171 171 0.26
172 331 0.49
173 22 0.03
174 3 0.00
175 1 0.00
ACGTcount: A:0.40, C:0.13, G:0.14, T:0.33
Consensus pattern (167 bp):
TAAAATCATTTAAAGCGAGTAACATGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTT
GTTAATGGATCGCTTTCGTTCACATTTCCTAATGCAAACAACAAATTATGATCGTTTTAACAAAA
ATGAAAAAAATTCAATTTAAAATCATTTATAAGATTA
Found at i:12101194 original size:171 final size:171
Alignment explanation
Indices: 12100885--12102488 Score: 1282
Period size: 171 Copynumber: 9.4 Consensus size: 171
12100875 TCACATTTTT
* * * * * * *
12100885 CAATGCAAACATCAAATTATCATATGCTTTAATC-AAAAGTG-AAAAAAA-TCAATTTAAAGTTA
1 CAATGCAAACATCAAATTATGATCTGTTTTAACCAAAAAG-GAAAAAAAATTCAACTTAAAATCA
* * * * ** *
12100947 TTTATAGGATTAGAAAATCATTTAAAGCAAGTAACAAGGCTTTTGAAGGCATGAGTAACTATAAA
65 TTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAA
* * * *
12101012 TAGAGTTTTCTTGTCAATGGATGGCTTTCGCTTCATGGTTCC
130 TGGACTTTTCTTATCAATGGATGGCTTTCGCTTCATGTTTCC
* * * * *
12101054 CAATGCAAACATCAAATTGTGATCTATTTTAACTAAAAAGGATAAAAAATTCAACTTAAAATTAT
1 CAATGCAAACATCAAATTATGATCTGTTTTAACCAAAAAGGAAAAAAAATTCAACTTAAAATCAT
* * * * * *
12101119 TTATCAGATTATAAAACCATTTAACGTGAGTAACAAGGC-TTCTAAAGGAATGAATGACAATAAA
66 TTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTC-AAAGGCATGAGTGACTATAAA
* * *
12101183 TGGACTTTTCTTATCAATGGATGGATTTCGATTCACGTTTCC
130 TGGACTTTTCTTATCAATGGATGGCTTTCGCTTCATGTTTCC
* ** ** * * * **
12101225 CATTGCAAACAAAAAATTATGA-CATGTTTTAATTAAAAATGAAAAGAACTTGTA-TTCAAAATC
1 CAATGCAAACATCAAATTATGATC-TGTTTTAACCAAAAAGGAAAAAAAATTCAACTT-AAAATC
* * * *
12101288 ATTTATAA-AGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTTGAAA-GTATGAGTCACTAT
64 ATTTATAAGA-TTATAAAACCATTTAAAGCGAGTAACAAGGC-TTTCAAAGGCATGAGTGACTAT
* * ***
12101351 AAATGGA-TTTGTCTTATCAATGGATAGCTTTTGCTTCGCATTTCC
127 AAATGGACTTT-TCTTATCAATGGATGGCTTTCGCTTCATGTTTCC
** * * * * *
12101396 TTATGCAAACAAT-ATATTATGATCTATTTGAA-AAAAAATGAAAAAAAATTCAACTTAAAATCA
1 CAATGCAAAC-ATCAAATTATGATCTGTTTTAACCAAAAAGGAAAAAAAATTCAACTTAAAATCA
** * * * * * * * *
12101459 TTTCGAAGACTATAAAACCATTTAAAGTGAATAACTAGGCCTTCGACAA--CATAAGTGATTGTA
65 TTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTC-A-AAGGCATGAGTGACTATA
* * **
12101522 AATGGACTTTCCTTATCAATAGG-CGGCTTTCGCTTCATGTTTTT
128 AATGGACTTTTCTTATCAAT-GGATGGCTTTCGCTTCATGTTTCC
* * * * ** * *
12101566 CACTGCAAATATCAAATCATGATCTGTTTGAACCAAAAATAAAAAAAAAATCAATTTAAAATCAT
1 CAATGCAAACATCAAATTATGATCTGTTTTAACCAAAAAGGAAAAAAAATTCAACTTAAAATCAT
* * * *
12101631 TTGTAAGATTATAAAAGCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAAT
66 TTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAAT
* * * *
12101696 TGACTTTT-TATGTCAA-GGATGTCTTTCGCATCATGTTTCC
131 GGACTTTTCT-TATCAATGGATGGCTTTCGCTTCATGTTTCC
** * * * * * *
12101736 TGATCCAAACAACCAATTATGATCTGTTTTAACCAAAAATGAAAAAAAAAATCAACTTTAAATCA
1 CAATGCAAACATCAAATTATGATCTGTTTTAACCAAAAA-GGAAAAAAAATTCAACTTAAAATCA
* * * * ** **
12101801 TTTATAAGACTATAAAACCACTTAAAGCAAATAATTAGGCTTTCAAAGATATGAGTGACTATAAA
65 TTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAA
* * * * * *
12101866 TAGACTTTTCTTGTTAAGGGGTGGCTTTCGCTTCAAGTTTCC
130 TGGACTTTTCTTATCAATGGATGGCTTTCGCTTCATGTTTCC
* * * *
12101908 CAATGCAAACATCAAATTGTGATCTGTATTAACCAAAAATGAAAAAAAAATTCAACCTAAAATCA
1 CAATGCAAACATCAAATTATGATCTGTTTTAACCAAAAA-GGAAAAAAAATTCAACTTAAAATCA
** * * * * * *
12101973 TTTATAAGATTATAAAATTATTTAAAGCGAGAAACAAGACTTTCGAAGGGATGAGAGACTATAGA
65 TTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAA
* * * *
12102038 TTGACTTTGGC-TATCAATGGATGGCTTTTGCTTCACGTTTCC
130 TGGACTTT-TCTTATCAATGGATGGCTTTCGCTTCATGTTTCC
* * * * *
12102080 TAAT-CTAGACA--AAAGTTATGATCT-TTCTCAACCAAAAAAGAAAAAAAA-TCAATTTAAAAT
1 CAATGC-AAACATCAAA-TTATGATCTGTT-TTAACCAAAAAGGAAAAAAAATTCAACTTAAAAT
*
12102140 CATTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTCAAAGGCATGAGTGACTATA
63 CATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATA
* * * **
12102205 GATTGACTTTTTTTATCAATGGATGGCTTTCGCTTCACATTTCCC
128 AATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCATGTTT-CC
* ** * * ** *
12102250 CAATGCAAAAAAAAAATTATGATCTGTTTTAACC-AAAATGAAAAAATATTTTGATTTAAAATCA
1 CAATGCAAACATCAAATTATGATCTGTTTTAACCAAAAAGGAAAAAA-AATTCAACTTAAAATCA
* * * * * * * * *
12102314 TTTATAA-AGTTATAAAACTACTGAAAGCGAGTTACAAGGCTTTCGAAGGCAAGAGTGGCAAAAA
65 TTTATAAGA-TTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAA
* * * * *
12102378 ATAGACTTTTTTTGTCAAGGGATGGCTTTCACTTAACAT-TTT-C
129 ATGGACTTTTCTTATCAATGGATGGCTTTCGCTT--CATGTTTCC
* * * * * * * * * *
12102421 GAATCCAAGCAACAAATTATGATC-GATTTGAACCAAAAATGAAAAAAATTTTAGCTTAAAATTA
1 CAATGCAAACATCAAATTATGATCTG-TTTTAACCAAAAAGGAAAAAAAATTCAACTTAAAATCA
12102485 TTTA
65 TTTA
12102489 AACCGAGTAA
Statistics
Matches: 1150, Mismatches: 241, Indels: 86
0.78 0.16 0.06
Matches are distributed among these distances:
169 140 0.12
170 213 0.19
171 509 0.44
172 280 0.24
173 6 0.01
174 2 0.00
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.32
Consensus pattern (171 bp):
CAATGCAAACATCAAATTATGATCTGTTTTAACCAAAAAGGAAAAAAAATTCAACTTAAAATCAT
TTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAAT
GGACTTTTCTTATCAATGGATGGCTTTCGCTTCATGTTTCC
Found at i:12101527 original size:170 final size:167
Alignment explanation
Indices: 12100960--12104530 Score: 1165
Period size: 171 Copynumber: 21.1 Consensus size: 167
12100950 ATAGGATTAG
* * * * * * * * *
12100960 AAAATCATTTAAAG-CAAGTAACAAGGCTTTTGAAGGCATGAGTAACTATAAATAGAGTTTTCTT
1 AAAACCATTTAAAGTGAA-TAACAAGGCCTTCGAAGACATAAGTGACTATAAATGGACTTTTCTT
* ** * * *
12101024 GTCAATGGATGGCTTTCGCTT-CATGGTTCCCAATGCAAAC-ATCAAATTGTGATCTATTTTAAC
65 ATCAATGGAT-GCTTTCGCTTCCAT--TTCCTTATGCAAACAAT--AATTATGATCTGTTTGAAC
* * * * * *
12101087 TAAAAAGGATAAAAAATTCAACTTAAAATTATTT-ATCAGATTAT
125 CAAAAATGAAAAAAAAATCAACTTAAAATCATTTGA--AGACTAT
* * * *
12101131 AAAACCATTTAACGTGAGTAACAAGG-CTTCTAAAGGA-ATGAA-TGACAATAAATGGACTTTTC
1 AAAACCATTTAAAGTGAATAACAAGGCCTTC-GAA-GACAT-AAGTGACTATAAATGGACTTTTC
* * * * * *
12101193 TTATCAATGGATGGATTTCGATTCACGTTTCC-CATTGCAAACAAAAAATTATGA-CATGTTTTA
63 TTATCAATGGAT-GCTTTCGCTTC-CATTTCCTTA-TGCAAAC-AATAATTATGATC-TGTTTGA
** * ** ** * *
12101256 ATTAAAAATGAAAAGAACTTGTA-TTCAAAATCATTT-ATAAAGTTAT
123 ACCAAAAATGAAAAAAAAATCAACTT-AAAATCATTTGA-AGA-CTAT
* * * * * * * *
12101302 AAAACCACTTAAAGCGAGTAACAAGGCTTTTGAA-AGTATGAGTCACTATAAATGGA-TTTGTCT
1 AAAACCATTTAAAGTGAATAACAAGGCCTTCGAAGA-CATAAGTGACTATAAATGGACTTT-TCT
* * *
12101365 TATCAATGGATAGCTTTTGCTTCGCATTTCCTTATGCAAACAATATATTATGATCTATTTGAA-A
64 TATCAATGGAT-GCTTTCGCTTC-CATTTCCTTATGCAAACAATA-ATTATGATCTGTTTGAACC
*
12101429 AAAAATGAAAAAAAATTCAACTTAAAATCATTTCGAAGACTAT
126 AAAAATGAAAAAAAAATCAACTTAAAATCATTT-GAAGACTAT
* * * *
12101472 AAAACCATTTAAAGTGAATAACTAGGCCTTCGACA-ACATAAGTGATTGTAAATGGACTTTCCTT
1 AAAACCATTTAAAGTGAATAACAAGGCCTTCGA-AGACATAAGTGACTATAAATGGACTTTTCTT
** * * *
12101536 ATCAATAGGCGGCTTTCGCTT-CATGTT-TTTCACTGCAAA-TATCAAATCATGATCTGTTTGAA
65 ATCAAT-GGATGCTTTCGCTTCCAT-TTCCTT-A-TGCAAACAAT--AATTATGATCTGTTTGAA
* * *
12101598 CCAAAAATAAAAAAAAAATCAATTTAAAATCATTTGTAAGATTAT
124 CCAAAAATGAAAAAAAAATCAACTTAAAATCATTTG-AAGACTAT
* * * * * *
12101643 AAAAGCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATTGACTTTT-TAT
1 AAAACCATTTAAAGTGAATAACAAGGCCTTCGAAGACATAAGTGACTATAAATGGACTTTTCT-T
* * * * * *
12101707 GTCAA-GGATGTCTTTCGCAT-CATGTTTCCTGATCCAAACAACCAATTATGATCTGTTTTAACC
65 ATCAATGGATG-CTTTCGCTTCCA--TTTCCTTATGCAAACAA-TAATTATGATCTGTTTGAACC
* *
12101770 AAAAATGAAAAAAAAAATCAACTTTAAATCATTTATAAGACTAT
126 AAAAATG-AAAAAAAAATCAACTTAAAATCATTT-GAAGACTAT
* ** ** * * * * * *
12101814 AAAACCACTTAAAGCAAATAATTAGGCTTTCAAAGATATGAGTGACTATAAATAGACTTTTCTTG
1 AAAACCATTTAAAGTGAATAACAAGGCCTTCGAAGACATAAGTGACTATAAATGGACTTTTCTTA
* * * * ** *
12101879 TTAAGGGGTGGCTTTCGCTTCAAGTTTCCCAATGCAAAC-ATCAAATTGTGATCTGTATT-AACC
66 TCAATGGAT-GCTTTCGCTTCCA-TTTCCTTATGCAAACAAT--AATTATGATCTGT-TTGAACC
* * *
12101942 AAAAATGAAAAAAAAATTCAACCTAAAATCATTTATAAGATTAT
126 AAAAATGAAAAAAAAA-TCAACTTAAAATCATTT-GAAGACTAT
** * * * ** * * * * *
12101986 AAAATTATTTAAAGCGAGA-AACAAGACTTTCGAAGGGATGAGAGACTATAGATTGACTTTGGC-
1 AAAACCATTTAAAGTGA-ATAACAAGGCCTTCGAAGACATAAGTGACTATAAATGGACTTT-TCT
* * * * *
12102049 TATCAATGGATGGCTTTTGCTTCACGTTTCCTAAT-CTAGACAA-AAGTTATGATCT-TTCTCAA
64 TATCAATGGAT-GCTTTCGCTTC-CATTTCCTTATGC-AAACAATAA-TTATGATCTGTT-TGAA
* * * *
12102111 CCAAAAAAG-AAAAAAAATCAATTTAAAATCATTTATAAGATTAT
124 CCAAAAATGAAAAAAAAATCAACTTAAAATCATTT-GAAGACTAT
* * * * * * * *
12102155 AAAACCATTTAAAG-CAAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAGATTGACTTTTTTT
1 AAAACCATTTAAAGTGAA-TAACAAGGCCTTCGAAGACATAAGTGACTATAAATGGACTTTTCTT
** * * *
12102219 ATCAATGGATGGCTTTCGCTTCACATTTCCCCAATGCAAAAAAAAAATTATGATCTGTTTTAACC
65 ATCAATGGAT-GCTTTCGCTTC-CATTT-CCTTATGC-AAACAATAATTATGATCTGTTTGAACC
** ** * * *
12102284 -AAAATGAAAAAATATTTTGATTTAAAATCATTT-ATAAAGTTAT
126 AAAAATGAAAAAA-AAATCAACTTAAAATCATTTGA-AGA-CTAT
* * * * * * * * * * * * *
12102327 AAAACTACTGAAAGCGAGTTACAAGGCTTTCGAAGGCA-AGAGTGGCAAAAAATAGACTTTTTTT
1 AAAACCATTTAAAGTGAATAACAAGGCCTTCGAAGACATA-AGTGACTATAAATGGACTTTTCTT
* * * * * ** * * *
12102391 GTCAAGGGATGGCTTTCACTTAACATTTTCGAATCCAAGCAACAAATTATGATC-GATTTGAACC
65 ATCAATGGAT-GCTTTCGCTT-CCATTTCCTTATGCAAACAA-TAATTATGATCTG-TTTGAACC
** * * * *
12102455 AAAAATGAAAAAAATTTTAGCTTAAAATTATTT-AA-ACCGAGT
126 AAAAATGAAAAAAAAATCAACTTAAAATCATTTGAAGA-CTA-T
* * * * * * *
12102497 AACAAGGC-TTTCAAAG-GAAT---TA-G---T-G-A-ATATAAATGGACT-T---T--TCCTGT
1 AA-AA-CCATTT-AAAGTGAATAACAAGGCCTTCGAAGACATAAGT-GACTATAAATGGACTTTT
* *** * * * ** * ** * * * *
12102544 -TAAGGGATGGCT--TTCGC-TTCACGTTTCCCAATGCAAACAACAGACTATGATATATTTGAAC
62 CTTATCAATGGATGCTT-TCGCTTCCATTTCCTTATGCAAACAATA-ATTATGATCTGTTTGAAC
* * * * * * *
12102605 CAAAAAAG-AAAAAAAGTTAATTTAAAATC-TTTTATGCTATTAT
125 CAAAAATGAAAAAAAAATCAACTTAAAATCATTTGAAG--ACTAT
* * * * * * * * * * *
12102648 AAAACCGTTTGAAG-CAAGTAATAGGGCTTTCGAAGGCATGAGTGATTGTAGATGGACTTTTCTT
1 AAAACCATTTAAAGTGAA-TAACAAGGCCTTCGAAGACATAAGTGACTATAAATGGACTTTTCTT
* * * * * * * **
12102712 ACCAATGGATGACTTTCGCTTCACGTTTCCTAATGCGAACAACAAATTATGATCTTTTTTAATGA
65 ATCAATGGATG-CTTTCGCTTC-CATTTCCTTATGCAAACAA-TAATTATGATCTGTTTGAACCA
* * *
12102777 AAAAT--AAAAAAAATCAATTTAAATTCATTCAT-AAGATTAT
127 AAAATGAAAAAAAAATCAACTTAAAATCATT--TGAAGACTAT
* * * * * * * * * * *
12102817 AAAATCATTTAAAATGAGTAAGAAGGCTTTCGTAGGA-ATGAGTAACTATAGATCGACTTTTGTT
1 AAAACCATTTAAAGTGAATAACAAGGCCTTCG-AAGACATAAGTGACTATAAATGGACTTTTCTT
* * * * * * * * * **
12102881 GTCAATAGATGGCTTTCACTT-AATGTTTCTTGATGAAAACAAAAAATTATGATCTATTTTAATT
65 ATCAATGGAT-GCTTTCGCTTCCAT-TTCCTT-ATGCAAAC-AATAATTATGATCTGTTTGAACC
* * * * *
12102945 AAAAAT---AAAAAAATTAATTTAAAACCATTT-ATAAAGTTAT
126 AAAAATGAAAAAAAAATCAACTTAAAATCATTTGA-AGA-CTAT
* * * * ** * **
12102985 AAAACTAATTAAAGTGAGTAACAAGACCTTCGAAG-GTTGAAGTGATTATAAATTAACTTTTCTT
1 AAAACCATTTAAAGTGAATAACAAGGCCTTCGAAGACAT-AAGTGACTATAAATGGACTTTTCTT
* * * * * * * * *
12103049 GTCAATGGATGGCTTTCACTTCGCGTTTACC-AATGC-AACAACATATTATAACCTGTTTTAACT
65 ATCAATGGAT-GCTTTCGCTTC-CATTT-CCTTATGCAAACAATA-ATTATGATCTGTTTGAACC
* * * * *
12103112 AAAAATGAAAAACAATTCAA-TCTAAAATTATTTATAAGATTAT
126 AAAAATGAAAAAAAAATCAACT-TAAAATCATTT-GAAGACTAT
* * * * ** * * *
12103155 AAAACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGTATGAGTAACTATAGATGGACTTTTCTTA
1 AAAACCATTTAAAGTGAATAACAAGGCCTTCGAAGACATAAGTGACTATAAATGGACTTTTCTTA
* * * * * * *
12103220 TCAATGGATATCTTTTGCTTCACGTTTCCTGATGCAAACAATAAATTATAATATGTTTTAACCAA
66 TCAATGGAT-GCTTTCGCTTC-CATTTCCTTATGCAAACAAT-AATTATGATCTGTTTGAACCAA
* * * *
12103285 AAATGAGAAAGAATTCAA-TTAAAAATCATTCAT-AAGATTAT
128 AAATGAAAAAAAAATCAACTT-AAAATCATT--TGAAGACTAT
* * * * *
12103326 AAAACCATTTAAAG-CAAGTAACATGGCTTTCGAA-AGCATGAGTGACTATAAATTGACTTTTCT
1 AAAACCATTTAAAGTGAA-TAACAAGGCCTTCGAAGA-CATAAGTGACTATAAATGGACTTTTCT
* * * * * *
12103389 TGTCAATGGATGGCATTCGCTTCACATTTTCTAATGCAAACAATAATT-TCTATTCTGTTTTAAC
64 TATCAATGGAT-GCTTTCGCTTC-CATTTCCTTATGCAAACAATAATTAT-GA-TCTGTTTGAAC
* * * * *
12103453 CAACAAA-G-AAGAAAATTCAA-TTGCAAATCATTTATAAGATTAT
125 CAA-AAATGAAAAAAAAATCAACTT-AAAATCATTT-GAAGACTAT
** * **** * * * * * * *
12103496 AAAATGATTTAAAGCGTGCGAGAAGGCTTTCGAAGGCATGAGTGAATATAAATGGACTTTTCCTG
1 AAAACCATTTAAAGTGAATAACAAGGCCTTCGAAGACATAAGTGACTATAAATGGACTTTTCTTA
* * * * *
12103561 TCAATGGATGGCATTCGCTTCACGTTT-CTTGATGCAGACAACAAATTATGATCTGTTTTAA-CA
66 TCAATGGAT-GCTTTCGCTTC-CATTTCCTT-ATGCAAACAA-TAATTATGATCTGTTTGAACCA
* * * * *
12103624 AAAATGAAAAATAATTCAA-TTCAAAATCATTTATAAGATTTT
127 AAAATGAAAAAAAAATCAACTT-AAAATCATTT-GAAGACTAT
* * * * * * * * *
12103666 AAAACCATTTGAAGCGAGTAAGAAGGCTTTTG-AGAGCATGAA-TGACTACAGATGAACTTTTCT
1 AAAACCATTTAAAGTGAATAACAAGGCCTTCGAAGA-CAT-AAGTGACTATAAATGGACTTTTCT
* * ** * *
12103729 TGTCAATGAATGGCTTTCGCTTCTTGTTTCAC--AGTGCAAATAAGAAATTATGATCTGTTTGAA
64 TATCAATGGAT-GCTTTCGCTTC-CATTTC-CTTA-TGCAAACAA-TAATTATGATCTGTTTGAA
* * *
12103792 CCAAAAATGAAAAACAAATTCAATTTAAAATCATTTGTAA-AGTTAT
124 CCAAAAATGAAAAA-AAAATCAACTTAAAATCATTTG-AAGA-CTAT
* * * * * * *
12103838 AAAACCACTTAAAG-CAAGTAATAAGGCTTTCAAAGGCATAAGTGACTATAAATGGACTTTTTTT
1 AAAACCATTTAAAGTGAA-TAACAAGGCCTTCGAAGACATAAGTGACTATAAATGGACTTTTCTT
* * * * * * *
12103902 GTCAATGAATGGCTTTCGCTTCACATTTCCTAATGCAAACAACAAATTATGATTTGTTTTAAACA
65 ATCAATGGAT-GCTTTCGCTTC-CATTTCCTTATGCAAACAA-TAATTATGATCTGTTTGAACCA
* * * * * *
12103967 AAAGTGAATGAAAAATTAAACTTAAAATCATTTATAAGATTAT
127 AAAATGAA-AAAAAAATCAACTTAAAATCATTT-GAAGACTAT
* * * * * *
12104010 AAAACCATTTAAAGCGAATAAGTAA-GCTTTAGAAGGCATAAGTGACAATAAATGGACTTTTCTT
1 AAAACCATTTAAAGTGAATAA-CAAGGCCTTCGAAGACATAAGTGACTATAAATGGACTTTTCTT
* * * * * *
12104074 ATCTATAGATGGCTTTCGCTTCACAGTTTCC-AATGCAAAC-ATCAAATTATGACCTATTTTAAC
65 ATCAATGGAT-GCTTTCGCTTC-CA-TTTCCTTATGCAAACAAT--AATTATGATCTGTTTGAAC
* * * *
12104137 TAAAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGAATAT
125 CAAAAATGAAAAAAAAATCAACTTAAAATCATTT-GAAGACTAT
* * * * ** **
12104181 AAAACCATTTAAAG-CAAGTAACAAGGCATTTGAAGGCAT-AGATGACTATAAATAAACTTTTAA
1 AAAACCATTTAAAGTGAA-TAACAAGGCCTTCGAAGACATAAG-TGACTATAAATGGACTTTTCT
* * * *
12104244 TGTCAATGGATGGCTTTCGCTTCGAGTTTCC-CATTGCAAACAATAAATTATGA-CATGTTTTAA
64 TATCAATGGAT-GCTTTCGCTTCCA-TTTCCTTA-TGCAAACAAT-AATTATGATC-TGTTTGAA
** * ** * * *
12104307 CCAACGATG-CAAAAAAATTTAGTT-AAATCATTT-ATAAAGTTAT
124 CCAAAAATGAAAAAAAAATCAACTTAAAATCATTTGA-AGA-CTAT
* * * * * * * * *
12104350 AAAACTACTTAAAGTGAGTAACAAGACTTTCGAAGGCATGAGTGATTATAAATGGACTTTTCTTG
1 AAAACCATTTAAAGTGAATAACAAGGCCTTCGAAGACATAAGTGACTATAAATGGACTTTTCTTA
** * * * * *
12104415 TCAATGGATGGCGCTCGCTTCACGTTT-CTCAATGCAAACAATAAATTATGATTTGTTTTAACAA
66 TCAATGGAT-GCTTTCGCTTC-CATTTCCT-TATGCAAACAAT-AATTATGATCTGTTTGAAC-C
* * * *
12104479 AAAAATG-AGAAAAATTCAATTTAAAATCATTTGTAAGATTAT
126 AAAAATGAAAAAAAAATCAACTTAAAATCATTTG-AAGACTAT
*
12104521 AAAACAATTT
1 AAAACCATTT
12104531 GTCACGACCC
Statistics
Matches: 2649, Mismatches: 552, Indels: 398
0.74 0.15 0.11
Matches are distributed among these distances:
149 9 0.00
150 24 0.01
151 39 0.01
152 4 0.00
153 2 0.00
154 1 0.00
155 5 0.00
156 3 0.00
157 1 0.00
158 2 0.00
159 4 0.00
160 5 0.00
161 3 0.00
162 4 0.00
163 2 0.00
164 1 0.00
165 3 0.00
166 12 0.00
167 33 0.01
168 109 0.04
169 354 0.13
170 635 0.24
171 829 0.31
172 534 0.20
173 31 0.01
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.32
Consensus pattern (167 bp):
AAAACCATTTAAAGTGAATAACAAGGCCTTCGAAGACATAAGTGACTATAAATGGACTTTTCTTA
TCAATGGATGCTTTCGCTTCCATTTCCTTATGCAAACAATAATTATGATCTGTTTGAACCAAAAA
TGAAAAAAAAATCAACTTAAAATCATTTGAAGACTAT
Found at i:12101645 original size:341 final size:341
Alignment explanation
Indices: 12100867--12104530 Score: 2726
Period size: 341 Copynumber: 10.8 Consensus size: 341
12100857 GCATGTGTGA
* * ** ** * * * * *
12100867 CTTTTGCTTCACATTTTTCAATGCAAACATCAAATTATCATATGCTTTAATCAAAAGTG--AAAA
1 CTTTCGCTTCACGTTTCCCAATGCAAACAAAAAATTATGATCTGTTTTAACCAAAAATGAAAAAA
* * * * * * *
12100930 AAA-TCAATTTAAAGTTATTTATAGGATTAGAAAATCATTTAAAGCAAGTAACAAGGCTTTTGAA
66 AAATTCAATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAA
* * * * *** *
12100994 GGCATGAGTAACTATAAATAGAGTTTTCTTGTCAATGGATGGCTTTCGCTTCATGGTTCCCAATG
131 GGCATGAGTGACTATAAATTGACTTTTCTTATCAATGGATGGCTTTCGCTTCACATTTCCTAATG
* * * * *
12101059 CAAAC-ATCAAATTGTGATCTATTTTAACTAAAAAGGATAAAAAATTCAACTTAAAATTATTTAT
196 CAAACAAT--AATTATGATCTATTTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTAT
* * * * * *
12101123 CAGATTATAAAACCATTTAACGTGAGTAACAAGG-CTTCTAAAGGAATGAA-TGACAATAAATGG
259 AAGACTATAAAACCATTTAAAGTGAATAACAAGGCCTTC-AAA-GCAT-AAGTGACTATAAATGG
12101186 ACTTTTCTTATCAATGGATGG
321 ACTTTTCTTATCAATGGATGG
* * * **
12101207 ATTTCGATTCACGTTTCCCATTGCAAACAAAAAATTATGA-CATGTTTTAATTAAAAATG-AAAA
1 CTTTCGCTTCACGTTTCCCAATGCAAACAAAAAATTATGATC-TGTTTTAACCAAAAATGAAAAA
* * ** * * *
12101270 GAACTTGTATTCAAAATCATTTATAA-AGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTTG
65 AAAATTCAATTTAAAATCATTTATAAGA-TTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCG
* * * * * * * *
12101334 AAAGTATGAGTCACTATAAATGGA-TTTGTCTTATCAATGGATAGCTTTTGCTTCGCATTTCCTT
129 AAGGCATGAGTGACTATAAATTGACTTT-TCTTATCAATGGATGGCTTTCGCTTCACATTTCCTA
*
12101398 ATGCAAACAATATATTATGATCTATTTGAA-AAAAAATGAAAAAAAATTCAACTTAAAATCATTT
193 ATGCAAACAATA-ATTATGATCTATTTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTT
** * * *
12101462 CGAAGACTATAAAACCATTTAAAGTGAATAACTAGGCCTTCGACAA-CATAAGTGATTGTAAATG
257 ATAAGACTATAAAACCATTTAAAGTGAATAACAAGGCCTTC-A-AAGCATAAGTGACTATAAATG
* *
12101526 GACTTTCCTTATCAATAGG-CGG
320 GACTTTTCTTATCAAT-GGATGG
* ** * * ** * *
12101548 CTTTCGCTTCATGTTTTTCACTGCAAATATCAAATCATGATCTGTTTGAACCAAAAAT-AAAAAA
1 CTTTCGCTTCACGTTTCCCAATGCAAACAAAAAATTATGATCTGTTTTAACCAAAAATGAAAAAA
* * * *
12101612 AAAATCAATTTAAAATCATTTGTAAGATTATAAAAGCATTTAAAGTGAGTAACAAGGCTTTCGAA
66 AAATTCAATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAA
* * * ** *
12101677 GGCATGAGTGACTATAAATTGACTTTT-TATGTCAA-GGATGTCTTTCGCATCATGTTTCCTGAT
131 GGCATGAGTGACTATAAATTGACTTTTCT-TATCAATGGATGGCTTTCGCTTCACATTTCCTAAT
* * * * * *
12101740 CCAAACAACCAATTATGATCTGTTTTAACCAAAAATGAAAAAAAAAATCAACTTTAAATCATTTA
195 GCAAACAA-TAATTATGATCTATTTTAACAAAAAATG-AAAAAAAATTCAACTTAAAATCATTTA
* ** ** * *
12101805 TAAGACTATAAAACCACTTAAAGCAAATAATTAGGCTTTCAAAG-ATATGAGTGACTATAAATAG
258 TAAGACTATAAAACCATTTAAAGTGAATAACAAGGCCTTCAAAGCATA--AGTGACTATAAATGG
* * * *
12101869 ACTTTTCTTGTTAAGGGGTGG
321 ACTTTTCTTATCAATGGATGG
* ** * *
12101890 CTTTCGCTTCAAGTTTCCCAATGCAAACATCAAATTGTGATCTGTATTAACCAAAAATGAAAAAA
1 CTTTCGCTTCACGTTTCCCAATGCAAACAAAAAATTATGATCTGTTTTAACCAAAAATGAAAAAA
** ** * *
12101955 AAATTCAACCTAAAATCATTTATAAGATTATAAAATTATTTAAAGCGAGAAACAAGACTTTCGAA
66 AAATTCAATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAA
* * * * * *
12102020 GGGATGAGAGACTATAGATTGACTTTGGC-TATCAATGGATGGCTTTTGCTTCACGTTTCCTAAT
131 GGCATGAGTGACTATAAATTGACTTT-TCTTATCAATGGATGGCTTTCGCTTCACATTTCCTAAT
* * *
12102084 -CTAGACAA-AAGTTATGATCT-TTCTCAACCAAAAAA-GAAAAAAAA-TCAATTTAAAATCATT
195 GC-AAACAATAA-TTATGATCTATT-TTAA-CAAAAAATGAAAAAAAATTCAACTTAAAATCATT
* * * * *
12102144 TATAAGATTATAAAACCATTTAAAG-CAAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAGAT
256 TATAAGACTATAAAACCATTTAAAGTGAA-TAACAAGGCCTTCAAA-GCATAAGTGACTATAAAT
* *
12102208 TGACTTTTTTTATCAATGGATGG
319 GGACTTTTCTTATCAATGGATGG
* *
12102231 CTTTCGCTTCACATTTCCCCAATGCAAAAAAAAAATTATGATCTGTTTTAACC-AAAATGAAAAA
1 CTTTCGCTTCACGTTT-CCCAATGCAAACAAAAAATTATGATCTGTTTTAACCAAAAATGAAAAA
* * ** * * * *
12102295 ATATTTTGATTTAAAATCATTTATAA-AGTTATAAAACTACTGAAAGCGAGTTACAAGGCTTTCG
65 AAAATTCAATTTAAAATCATTTATAAGA-TTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCG
* * * * * * * * * * * *
12102359 AAGGCAAGAGTGGCAAAAAATAGACTTTTTTTGTCAAGGGATGGCTTTCACTTAACATTTTCGAA
129 AAGGCATGAGTGACTATAAATTGACTTTTCTTATCAATGGATGGCTTTCGCTTCACATTTCCTAA
* * * * * * *
12102424 TCCAAGCAACAAATTATGATCGATTTGAACCAAAAATG-AAAAAAATT----TT---AGC--TTA
194 TGCAAACAA-TAATTATGATCTATTTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTA
** * * * * *
12102479 -AA-A-T-T------ATTTAAACCGAGTAACAAGGCTTTCAAAGGAATTAGTGAATATAAATGGA
258 TAAGACTATAAAACCATTTAAAGTGAATAACAAGGCCTTCAAA-GCATAAGTGACTATAAATGGA
* * * *
12102534 CTTTTCCTGTTAAGGGATGG
322 CTTTTCTTATCAATGGATGG
* * * * * * *
12102554 CTTTCGCTTCACGTTTCCCAATGCAAACAACAGACTATGATATATTTGAACCAAAAAAG-AAAAA
1 CTTTCGCTTCACGTTTCCCAATGCAAACAAAAAATTATGATCTGTTTTAACCAAAAATGAAAAAA
* * *** * * * * *
12102618 AAGTT-AATTTAAAATCTTTTATGCTATTATAAAACCGTTTGAAGCAAGTAATAGGGCTTTCGAA
66 AAATTCAATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAA
* * * * * * *
12102682 GGCATGAGTGATTGTAGATGGACTTTTCTTACCAATGGATGACTTTCGCTTCACGTTTCCTAATG
131 GGCATGAGTGACTATAAATTGACTTTTCTTATCAATGGATGGCTTTCGCTTCACATTTCCTAATG
* * * ** * * *
12102747 CGAACAACAAATTATGATCTTTTTTAATGAAAAAT-AAAAAAAA-TCAATTTAAATTCATTCATA
196 CAAACAA-TAATTATGATCTATTTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTATA
* * * * * * * * * * * * *
12102810 AGATTATAAAATCATTTAAAATGAGTAAGAAGGCTTTCGTAGGAATGAGTAACTATAGATCGACT
260 AGACTATAAAACCATTTAAAGTGAATAACAAGGCCTTC-AAAGCATAAGTGACTATAAATGGACT
* * *
12102875 TTTGTTGTCAATAGATGG
324 TTTCTTATCAATGGATGG
* * * *** * * **
12102893 CTTTCACTTAATGTTTCTTGATGAAAACAAAAAATTATGATCTATTTTAATTAAAAAT---AAAA
1 CTTTCGCTTCACGTTTCCCAATGCAAACAAAAAATTATGATCTGTTTTAACCAAAAATGAAAAAA
* * * * * *
12102955 AAATT-AATTTAAAACCATTTATAA-AGTTATAAAACTAATTAAAGTGAGTAACAAGACCTTCGA
66 AAATTCAATTTAAAATCATTTATAAGA-TTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGA
* * * * * * *
12103018 AGG-TTGAAGTGATTATAAATTAACTTTTCTTGTCAATGGATGGCTTTCACTTCGCGTTTACC-A
130 AGGCATG-AGTGACTATAAATTGACTTTTCTTATCAATGGATGGCTTTCGCTTCACATTT-CCTA
* * * * * * *
12103081 ATGC-AACAACATATTATAACCTGTTTTAACTAAAAATGAAAAACAATTCAA-TCTAAAATTATT
193 ATGCAAACAATA-ATTATGATCTATTTTAACAAAAAATGAAAAAAAATTCAACT-TAAAATCATT
* * * * * * * * * *
12103144 TATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGTATGAGTAACTATAGATG
256 TATAAGACTATAAAACCATTTAAAGTGAATAACAAGGCCTTC-AAAGCATAAGTGACTATAAATG
**
12103209 GACTTTTCTTATCAATGGATAT
320 GACTTTTCTTATCAATGGATGG
* ** * * * *
12103231 CTTTTGCTTCACGTTTCCTGATGCAAACAATAAATTATAATATGTTTTAACCAAAAATG-AGAAA
1 CTTTCGCTTCACGTTTCCCAATGCAAACAAAAAATTATGATCTGTTTTAACCAAAAATGAAAAAA
* * * * *
12103295 GAATTCAATTAAAAATCATTCATAAGATTATAAAACCATTTAAAGCAAGTAACATGGCTTTCGAA
66 AAATTCAATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAA
* * * *
12103360 AGCATGAGTGACTATAAATTGACTTTTCTTGTCAATGGATGGCATTCGCTTCACATTTTCTAATG
131 GGCATGAGTGACTATAAATTGACTTTTCTTATCAATGGATGGCTTTCGCTTCACATTTCCTAATG
* * * * *
12103425 CAAACAATAATT-TCTATTCTGTTTTAACCAACAAA-G-AAGAAAATTCAA-TTGCAAATCATTT
196 CAAACAATAATTAT-GA-TCTATTTTAA-CAAAAAATGAAAAAAAATTCAACTT-AAAATCATTT
* ** * **** * * * * *
12103486 ATAAGATTATAAAATGATTTAAAGCGTGCGAGAAGGCTTTCGAAGGCATGAGTGAATATAAATGG
257 ATAAGACTATAAAACCATTTAAAGTGAATAACAAGGCCTTC-AAAGCATAAGTGACTATAAATGG
* *
12103551 ACTTTTCCTGTCAATGGATGG
321 ACTTTTCTTATCAATGGATGG
* *** * *
12103572 CATTCGCTTCACGTTTCTTGATGCAGACAACAAATTATGATCTGTTTTAA-CAAAAATG-AAAAA
1 CTTTCGCTTCACGTTTCCCAATGCAAACAAAAAATTATGATCTGTTTTAACCAAAAATGAAAAAA
* * * * * *
12103635 TAATTCAATTCAAAATCATTTATAAGATTTTAAAACCATTTGAAGCGAGTAAGAAGGCTTTTG-A
66 AAATTCAATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAA
* * * * * ***
12103699 GAGCATGAATGACTACAGA-TGAACTTTTCTTGTCAATGAATGGCTTTCGCTTCTTGTTTCAC-A
131 G-GCATGAGTGACTATAAATTG-ACTTTTCTTATCAATGGATGGCTTTCGCTTCACATTTC-CTA
* * * * * * *
12103762 GTGCAAATAAGAAATTATGATCTGTTTGAACCAAAAATGAAAAACAAATTCAATTTAAAATCATT
193 ATGCAAACAA-TAATTATGATCTATTTTAACAAAAAATGAAAAA-AAATTCAACTTAAAATCATT
* * * * * *
12103827 TGTAA-AGTTATAAAACCACTTAAAG-CAAGTAATAAGGCTTTCAAAGGCATAAGTGACTATAAA
256 TATAAGA-CTATAAAACCATTTAAAGTGAA-TAACAAGGCCTTCAAA-GCATAAGTGACTATAAA
* * *
12103890 TGGACTTTTTTTGTCAATGAATGG
318 TGGACTTTTCTTATCAATGGATGG
* * * * * * **
12103914 CTTTCGCTTCACATTTCCTAATGCAAACAACAAATTATGATTTGTTTTAAACAAAAGTGAATGAA
1 CTTTCGCTTCACGTTTCCCAATGCAAACAAAAAATTATGATCTGTTTTAACCAAAAATGAAAAAA
* * * * *
12103979 AAATTAAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAATAAGTAA-GCTTTAGA
66 AAATTCAATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAA-CAAGGCTTTCGA
* * * * *
12104043 AGGCATAAGTGACAATAAATGGACTTTTCTTATCTATAGATGGCTTTCGCTTCACAGTTTCC-AA
130 AGGCATGAGTGACTATAAATTGACTTTTCTTATCAATGGATGGCTTTCGCTTCACA-TTTCCTAA
* *
12104107 TGCAAAC-ATCAAATTATGACCTATTTTAACTAAAAATGAAAAAAAATTCAACTTAAAATCATTT
194 TGCAAACAAT--AATTATGATCTATTTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTT
* * * * *
12104171 ATAAGAATATAAAACCATTTAAAG-CAAGTAACAAGGCATTTGAAGGCAT-AGATGACTATAAAT
257 ATAAGACTATAAAACCATTTAAAGTGAA-TAACAAGGC-CTTCAAAGCATAAG-TGACTATAAAT
** ** *
12104234 AAACTTTTAATGTCAATGGATGG
319 GGACTTTTCTTATCAATGGATGG
* * ** *
12104257 CTTTCGCTTCGA-GTTTCCCATTGCAAACAATAAATTATGA-CATGTTTTAACCAACGATG-CAA
1 CTTTCGCTTC-ACGTTTCCCAATGCAAACAAAAAATTATGATC-TGTTTTAACCAAAAATGAAAA
* * * * * *
12104319 AAAAATT-TAGTT-AAATCATTTATAA-AGTTATAAAACTACTTAAAGTGAGTAACAAGACTTTC
64 AAAAATTCAATTTAAAATCATTTATAAGA-TTATAAAACCATTTAAAGCGAGTAACAAGGCTTTC
* * * ** *
12104381 GAAGGCATGAGTGATTATAAATGGACTTTTCTTGTCAATGGATGGCGCTCGCTTCACGTTT-CTC
128 GAAGGCATGAGTGACTATAAATTGACTTTTCTTATCAATGGATGGCTTTCGCTTCACATTTCCT-
* * * *
12104445 AATGCAAACAATAAATTATGATTTGTTTTAACAAAAAAATG-AGAAAAATTCAATTTAAAATCAT
192 AATGCAAACAAT-AATTATGATCTATTTTAAC-AAAAAATGAAAAAAAATTCAACTTAAAATCAT
* * *
12104509 TTGTAAGATTATAAAACAATTT
255 TTATAAGACTATAAAACCATTT
12104531 GTCACGACCC
Statistics
Matches: 2659, Mismatches: 549, Indels: 232
0.77 0.16 0.07
Matches are distributed among these distances:
320 1 0.00
321 125 0.05
322 38 0.01
323 75 0.03
324 3 0.00
327 1 0.00
329 3 0.00
330 3 0.00
331 2 0.00
332 3 0.00
333 4 0.00
335 3 0.00
336 28 0.01
337 109 0.04
338 136 0.05
339 110 0.04
340 392 0.15
341 711 0.27
342 473 0.18
343 260 0.10
344 170 0.06
345 9 0.00
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.32
Consensus pattern (341 bp):
CTTTCGCTTCACGTTTCCCAATGCAAACAAAAAATTATGATCTGTTTTAACCAAAAATGAAAAAA
AAATTCAATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAA
GGCATGAGTGACTATAAATTGACTTTTCTTATCAATGGATGGCTTTCGCTTCACATTTCCTAATG
CAAACAATAATTATGATCTATTTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTATAA
GACTATAAAACCATTTAAAGTGAATAACAAGGCCTTCAAAGCATAAGTGACTATAAATGGACTTT
TCTTATCAATGGATGG
Found at i:12101843 original size:512 final size:511
Alignment explanation
Indices: 12100867--12104530 Score: 3168
Period size: 512 Copynumber: 7.2 Consensus size: 511
12100857 GCATGTGTGA
* * * * ** *
12100867 CTTTTGCTTCACATTT-TTCAATGCAAAC-ATCAAATTATCATATGCTTTAATC-AAAAGTGAAA
1 CTTTCGCTTCACATTTCCT-AATGCAAACAAT-AAATTATGATCTATTTTAA-CAAAAAATGAAA
* * * * * *
12100929 AAAA-TCAATTTAAAGTTATTTATAGGATTAGAAAA-TCATTTAAAGC-AAGTAACAAGGCTTTT
63 AAAATTCAACTTAAAATCATTTATAAGATTATAAAACT-ATTTAAAGCGAA-TAACAAGGCTTTC
* * * * * * * *
12100991 GAAGGCATGAGT-AACTATAAATAGAGTTTTCTTGTCAATGGATGGCTTTCGCTTCATGGTTCCC
126 GAAGGCATAAGTGAA-TATAAATGGACTTTCCTTATCAATGGATGGCTTTCGCTTCACGTTTTCC
* * * * * * *
12101055 AATGCAAACATCAAATTGTGATCTATTTTAACTAAAAAGGATAAAAAATTCAACTTAAAATTATT
190 AATGCAAACAACAAATTATGATCTATTTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATT
* * * * * * * *
12101120 TATCAGATTATAAAACCATTTAACGTGAGTAACAAGGC-TTCTAAAGGAATGAATGACAATAAAT
255 TATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTC-GAAGGCATGAGTGACTATAGAT
* * *
12101184 GGACTTTTCTTATCAATGGATGGATTTCGATTCACGTTTCC-CATTGCAAACAAAAAATTATGA-
319 GGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTTCCTGA-TGCAAACAAAAAATTATGAT
** * * ** *
12101247 CATGTTTTAATTAAAAATGAAAAGAACTTGTATTCAAAATCATTTATAAAGTTATAAAACCACTT
383 C-TGTTTTAACCAAAAATGAAAAAAAATTCAATT-TAAATCATTTATAAAGTTATAAAACCACTT
* * * *
12101312 AAAGCGAGTAACAAGGCTTTTGAAAGTATGAGTCACTATAAATGGA-TTTGTCTTATCAATGGAT
446 AAAGCGAGTAACAAGGCTTTCGAAAGCATGAGTGACTATAAATGGACTTT-TCTTGTCAATGGAT
*
12101376 AG
510 GG
* * * * *
12101378 CTTTTGCTTCGCATTTCCTTATGCAAACAATATATTATGATCTATTTGAA-AAAAAATGAAAAAA
1 CTTTCGCTTCACATTTCCTAATGCAAACAATAAATTATGATCTATTTTAACAAAAAATG-AAAAA
** * * * * *
12101442 AATTCAACTTAAAATCATTTCGAAGACTATAAAACCATTTAAAGTGAATAACTAGGCCTTCGACA
65 AATTCAACTTAAAATCATTTATAAGATTATAAAACTATTTAAAGCGAATAACAAGGCTTTCGA-A
* * * * * * *
12101507 -ACATAAGTGATTGTAAATGGACTTTCCTTATCAATAGG-CGGCTTTCGCTTCATGTTTTTCACT
129 GGCATAAGTGAATATAAATGGACTTTCCTTATCAAT-GGATGGCTTTCGCTTCACGTTTTCCAAT
* * * * * * * *
12101570 GCAAATATCAAATCATGATCTGTTTGAACCAAAAATAAAAAAAAAATCAATTTAAAATCATTTGT
193 GCAAACAACAAATTATGATCTATTTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTAT
* * * *
12101635 AAGATTATAAAAGCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATTGAC
258 AAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAGATGGAC
* * * * * **
12101700 TTTT-TATGTCAA-GGATGTCTTTCGCATCATGTTTCCTGATCCAAACAACCAATTATGATCTGT
323 TTTTCT-TATCAATGGATGGCTTTCGCTTCACGTTTCCTGATGCAAACAAAAAATTATGATCTGT
* *
12101763 TTTAACCAAAAATGAAAAAAAAAATCAACTTTAAATCATTTAT-AAGACTATAAAACCACTTAAA
387 TTTAACCAAAAATG-AAAAAAAATTCAA-TTTAAATCATTTATAAAG-TTATAAAACCACTTAAA
* * ** * * * * *
12101827 GCAAATAATTAGGCTTTC-AAAGATATGAGTGACTATAAATAGACTTTTCTTGTTAAGGGGTGG
449 GCGAGTAACAAGGCTTTCGAAAG-CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGG
* * * * *
12101890 CTTTCGCTTCA-AGTTTCCCAATGCAAAC-ATCAAATTGTGATCTGTATTAACCAAAAATGAAAA
1 CTTTCGCTTCACA-TTTCCTAATGCAAACAAT-AAATTATGATCTATTTTAACAAAAAATG--AA
* * *
12101953 AAAAATTCAACCTAAAATCATTTATAAGATTATAAAATTATTTAAAGCGAGA-AACAAGACTTTC
62 AAAAATTCAACTTAAAATCATTTATAAGATTATAAAACTATTTAAAGCGA-ATAACAAGGCTTTC
* * * * * * * *
12102017 GAAGGGATGAGAGACTATAGATTGACTTTGGC-TATCAATGGATGGCTTTTGCTTCACG-TTTCC
126 GAAGGCATAAGTGAATATAAATGGACTTT-CCTTATCAATGGATGGCTTTCGCTTCACGTTTTCC
* * * *
12102080 TAAT-CTAGACAA-AAGTTATGATCT-TTCTCAACCAAAAAAGAAAAAAAA-TCAATTTAAAATC
190 -AATGC-AAACAACAAATTATGATCTATT-TTAACCAAAAATGAAAAAAAATTCAATTTAAAATC
* *
12102141 ATTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAG
252 ATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAG
* * * ** *
12102206 ATTGACTTTTTTTATCAATGGATGGCTTTCGCTTCACATTTCCCCAATGCAAAAAAAAAATTATG
317 ATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTT-CCTGATGCAAACAAAAAATTATG
* ** *
12102271 ATCTGTTTTAACC-AAAATGAAAAAATATTTTGATTTAAAATCATTTATAAAGTTATAAAACTAC
381 ATCTGTTTTAACCAAAAATGAAAAAA-AATTCAATTT-AAATCATTTATAAAGTTATAAAACCAC
* * * * * * * * * *
12102335 TGAAAGCGAGTTACAAGGCTTTCGAAGGCAAGAGTGGCAAAAAATAGACTTTTTTTGTCAAGGGA
444 TTAAAGCGAGTAACAAGGCTTTCGAAAGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGA
12102400 TGG
509 TGG
* * * * * * * * * *
12102403 CTTTCACTTAACATTTTCGAATCCAAGCAACAAATTATGATCGATTTGAACCAAAAATGAAAAAA
1 CTTTCGCTTCACATTTCCTAATGCAAACAATAAATTATGATCTATTTTAACAAAAAATGAAAAAA
* * * *
12102468 ATT----TT---AGC---T-TAA-A--AT-----TATTTAAACCGAGTAACAAGGCTTTCAAAGG
66 ATTCAACTTAAAATCATTTATAAGATTATAAAACTATTTAAAGCGAATAACAAGGCTTTCGAAGG
* * * *
12102514 AATTAGTGAATATAAATGGACTTTTCCTGT-T-AAGGGATGGCTTTCGCTTCACGTTTCCCAATG
131 CATAAGTGAATATAAATGGAC-TTTCCT-TATCAATGGATGGCTTTCGCTTCACGTTTTCCAATG
* * * * * * * *
12102577 CAAACAACAGACTATGATATATTTGAACCAAAAAAGAAAAAAAGTT-AATTTAAAATCTTTTATG
194 CAAACAACAAATTATGATCTATTTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTATA
** * * * * * * *
12102641 CTATTATAAAACCGTTTGAAGCAAGTAATAGGGCTTTCGAAGGCATGAGTGATTGTAGATGGACT
259 AGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAGATGGACT
* * * * * *
12102706 TTTCTTACCAATGGATGACTTTCGCTTCACGTTTCCTAATGCGAACAACAAATTATGATCTTTTT
324 TTTCTTATCAATGGATGGCTTTCGCTTCACGTTTCCTGATGCAAACAAAAAATTATGATCTGTTT
** * * * **
12102771 TAATGAAAAAT-AAAAAAAA-TCAATTTAAATTCATTCAT-AAGATTATAAAATCATTTAAAATG
389 TAACCAAAAATGAAAAAAAATTCAATTTAAA-TCATTTATAAAG-TTATAAAACCACTTAAAGCG
* * * * * * * * *
12102833 AGTAAGAAGGCTTTCGTAGGAATGAGTAACTATAGATCGACTTTTGTTGTCAATAGATGG
452 AGTAACAAGGCTTTCGAAAGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGG
* * ** * * * * **
12102893 CTTTCACTTAATGTTTCTTGATGAAAACAAAAAATTATGATCTATTTTAATTAAAAAT-AAAAAA
1 CTTTCGCTTCACATTTCCTAATGCAAACAATAAATTATGATCTATTTTAACAAAAAATGAAAAAA
* * * * * * *
12102957 ATT-AATTTAAAACCATTTATAA-AGTTATAAAACTAATTAAAGTGAGTAACAAGACCTTCGAAG
66 ATTCAACTTAAAATCATTTATAAGA-TTATAAAACTATTTAAAGCGAATAACAAGGCTTTCGAAG
* * ** * * * * *
12103020 G-TTGAAGTGATTATAAATTAACTTTTCTTGTCAATGGATGGCTTTCACTTCGCGTTTACCAATG
130 GCAT-AAGTGAATATAAATGGACTTTCCTTATCAATGGATGGCTTTCGCTTCACGTTTTCCAATG
* * * * * * * *
12103084 C-AACAACATATTATAACCTGTTTTAACTAAAAATGAAAAACAATTCAATCTAAAATTATTTATA
194 CAAACAACAAATTATGATCTATTTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTATA
* * *
12103148 AGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGTATGAGTAACTATAGATGGACT
259 AGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAGATGGACT
** * * * *
12103213 TTTCTTATCAATGGATATCTTTTGCTTCACGTTTCCTGATGCAAACAATAAATTATAATATGTTT
324 TTTCTTATCAATGGATGGCTTTCGCTTCACGTTTCCTGATGCAAACAAAAAATTATGATCTGTTT
* * * * * *
12103278 TAACCAAAAATGAGAAAGAATTCAATTAAAAATCATTCAT-AAGATTATAAAACCATTTAAAGCA
389 TAACCAAAAATGAAAAAAAATTCAATT-TAAATCATTTATAAAG-TTATAAAACCACTTAAAGCG
* *
12103342 AGTAACATGGCTTTCGAAAGCATGAGTGACTATAAATTGACTTTTCTTGTCAATGGATGG
452 AGTAACAAGGCTTTCGAAAGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGG
* * * * * * *
12103402 CATTCGCTTCACATTTTCTAATGCAAACAATAATTTCT-ATTCTGTTTTAACCAACAAA-GAAGA
1 CTTTCGCTTCACATTTCCTAATGCAAACAATAAATTATGA-TCTATTTTAA-CAAAAAATGAAAA
* **** *
12103465 AAATTCAA-TTGCAAATCATTTATAAGATTATAAAA-TGATTTAAAGCGTGCGAGAAGGCTTTCG
64 AAATTCAACTT-AAAATCATTTATAAGATTATAAAACT-ATTTAAAGCGAATAACAAGGCTTTCG
* * * *
12103528 AAGGCATGAGTGAATATAAATGGACTTTTCC-TGTCAATGGATGGCATTCGCTTCACG-TTTCTT
127 AAGGCATAAGTGAATATAAATGGAC-TTTCCTTATCAATGGATGGCTTTCGCTTCACGTTTTC-C
* * * * *
12103591 GATGCAGACAACAAATTATGATCTGTTTTAA-CAAAAATGAAAAATAATTCAATTCAAAATCATT
190 AATGCAAACAACAAATTATGATCTATTTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATT
* * * * * *
12103655 TATAAGATTTTAAAACCATTTGAAGCGAGTAAGAAGGCTTTTG-AGAGCATGAATGACTACAGAT
255 TATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAAG-GCATGAGTGACTATAGAT
* * * ** * * *
12103719 GAACTTTTCTTGTCAATGAATGGCTTTCGCTTCTTGTTTCACAG-TGCAAATAAGAAATTATGAT
319 GGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTTC-CTGATGCAAACAAAAAATTATGAT
* *
12103783 CTGTTTGAACCAAAAATGAAAAACAAATTCAATTTAAAATCATTTGTAAAGTTATAAAACCACTT
383 CTGTTTTAACCAAAAATGAAAAA-AAATTCAATTT-AAATCATTTATAAAGTTATAAAACCACTT
* * * * *
12103848 AAAGCAAGTAATAAGGCTTTC-AAAGGCATAAGTGACTATAAATGGACTTTTTTTGTCAATGAAT
446 AAAGCGAGTAACAAGGCTTTCGAAA-GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGAT
12103912 GG
510 GG
* * * *
12103914 CTTTCGCTTCACATTTCCTAATGCAAACAACAAATTATGATTTGTTTTAA-ACAAAAGTGAATGA
1 CTTTCGCTTCACATTTCCTAATGCAAACAATAAATTATGATCTATTTTAACA-AAAAATGAA--A
* * * *
12103978 AAAATTAAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAATAAGTAA-GCTTTAG
63 AAAATTCAACTTAAAATCATTTATAAGATTATAAAACTATTTAAAGCGAATAA-CAAGGCTTTCG
* * *
12104042 AAGGCATAAGTGACA-ATAAATGGACTTTTCTTATCTATAGATGGCTTTCGCTTCACAG-TTTCC
127 AAGGCATAAGTGA-ATATAAATGGACTTTCCTTATCAATGGATGGCTTTCGCTTCAC-GTTTTCC
* * * *
12104105 AATGCAAACATCAAATTATGACCTATTTTAACTAAAAATGAAAAAAAATTCAACTTAAAATCATT
190 AATGCAAACAACAAATTATGATCTATTTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATT
* * *
12104170 TATAAGAATATAAAACCATTTAAAGCAAGTAACAAGGCATTT-GAAGGCAT-AGATGACTATAAA
255 TATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGC-TTTCGAAGGCATGAG-TGACTATAGA
** ** * * *
12104233 TAAACTTTTAATGTCAATGGATGGCTTTCGCTTCGA-GTTTCC-CATTGCAAACAATAAATTATG
318 TGGACTTTTCTTATCAATGGATGGCTTTCGCTTC-ACGTTTCCTGA-TGCAAACAAAAAATTATG
** * * * *
12104296 A-CATGTTTTAACCAACGATGCAAAAAAATT-TAGTTAAATCATTTATAAAGTTATAAAACTACT
381 ATC-TGTTTTAACCAAAAATGAAAAAAAATTCAATTTAAATCATTTATAAAGTTATAAAACCACT
* * * *
12104359 TAAAGTGAGTAACAAGACTTTCGAAGGCATGAGTGATTATAAATGGACTTTTCTTGTCAATGGAT
445 TAAAGCGAGTAACAAGGCTTTCGAAAGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGAT
12104424 GG
510 GG
** * * * *
12104426 CGCTCGCTTCACGTTT-CTCAATGCAAACAATAAATTATGATTTGTTTTAACAAAAAAATGAGAA
1 CTTTCGCTTCACATTTCCT-AATGCAAACAATAAATTATGATCTATTTTAAC-AAAAAATGAAAA
* * *
12104490 AAATTCAATTTAAAATCATTTGTAAGATTATAAAACAATTT
64 AAATTCAACTTAAAATCATTTATAAGATTATAAAACTATTT
12104531 GTCACGACCC
Statistics
Matches: 2540, Mismatches: 497, Indels: 232
0.78 0.15 0.07
Matches are distributed among these distances:
489 15 0.01
490 116 0.05
491 1 0.00
492 107 0.04
493 142 0.06
494 4 0.00
495 2 0.00
497 2 0.00
498 1 0.00
499 5 0.00
500 3 0.00
501 1 0.00
502 2 0.00
504 2 0.00
505 1 0.00
506 40 0.02
507 200 0.08
508 7 0.00
509 119 0.05
510 30 0.01
511 394 0.16
512 703 0.28
513 218 0.09
514 263 0.10
515 157 0.06
516 5 0.00
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.32
Consensus pattern (511 bp):
CTTTCGCTTCACATTTCCTAATGCAAACAATAAATTATGATCTATTTTAACAAAAAATGAAAAAA
ATTCAACTTAAAATCATTTATAAGATTATAAAACTATTTAAAGCGAATAACAAGGCTTTCGAAGG
CATAAGTGAATATAAATGGACTTTCCTTATCAATGGATGGCTTTCGCTTCACGTTTTCCAATGCA
AACAACAAATTATGATCTATTTTAACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTATAAG
ATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAGATGGACTTT
TCTTATCAATGGATGGCTTTCGCTTCACGTTTCCTGATGCAAACAAAAAATTATGATCTGTTTTA
ACCAAAAATGAAAAAAAATTCAATTTAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTA
ACAAGGCTTTCGAAAGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGG
Found at i:12103386 original size:171 final size:170
Alignment explanation
Indices: 12102484--12104530 Score: 2018
Period size: 170 Copynumber: 12.0 Consensus size: 170
12102474 GCTTAAAATT
* * * * * * * *
12102484 ATTTAAACCGAGTAACAAGGCTTTCAAAGGAATTAGTGAATATAAATGGACTTTTCCTGTTAAGG
1 ATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATG
* * * * * * *
12102549 GATGGCTTTCGCTTCACGTTTCCCAATGCAAACAACAGACTATGATATATTTGAACCAAAAAAGA
66 GATGGCTTTCGCTTCACGTTTCCTAATGCAAACAACAAATTATGATCTGTTTTAACCAAAAATGA
* ***
12102614 AAAAAAGTT-AATTTAAAATCTTTTATGCTATTATAAAACC
131 AAAAAA-TTCAATTTAAAATCATTTATAAGATTATAAAACC
* * * * * * * * **
12102654 GTTTGAAGCAAGTAATAGGGCTTTCGAAGGCATGAGTGATTGTAGATGGACTTTTCTTACCAATG
1 ATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATG
* * * **
12102719 GATGACTTTCGCTTCACGTTTCCTAATGCGAACAACAAATTATGATCTTTTTTAATGAAAAAT-A
66 GATGGCTTTCGCTTCACGTTTCCTAATGCAAACAACAAATTATGATCTGTTTTAACCAAAAATGA
* * * *
12102783 AAAAAAATCAATTTAAATTCATTCATAAGATTATAAAATC
131 AAAAAATTCAATTTAAAATCATTTATAAGATTATAAAACC
** * * * * * * * *
12102823 ATTTAAAATGAGTAAGAAGGCTTTCGTAGGAATGAGTAACTATAGATCGACTTTTGTTGTCAATA
1 ATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATG
* * * * * * * * **
12102888 GATGGCTTTCACTTAATGTTTCTTGATGAAAACAAAAAATTATGATCTATTTTAATTAAAAAT-A
66 GATGGCTTTCGCTTCACGTTTCCTAATGCAAACAACAAATTATGATCTGTTTTAACCAAAAATGA
* *
12102952 AAAAAATT-AATTTAAAACCATTTATAA-AGTTATAAAACT
131 AAAAAATTCAATTTAAAATCATTTATAAGA-TTATAAAACC
* * * * * * **
12102991 AATTAAAGTGAGTAACAAGACCTTCGAAGG-TTGAAGTGATTATAAATTAACTTTTCTTGTCAAT
1 ATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATG-AGTGACTATAAATGGACTTTTCTTGTCAAT
* * * * * *
12103055 GGATGGCTTTCACTTCGCGTTTACC-AATGC-AACAACATATTATAACCTGTTTTAACTAAAAAT
65 GGATGGCTTTCGCTTCACGTTT-CCTAATGCAAACAACAAATTATGATCTGTTTTAACCAAAAAT
* *
12103118 GAAAAACAATTCAATCTAAAATTATTTATAAGATTATAAAACC
129 GAAAAA-AATTCAATTTAAAATCATTTATAAGATTATAAAACC
* * * * *
12103161 ATTTAAAGCGAGTAACTAGGCTTTCGAAGGTATGAGTAACTATAGATGGACTTTTCTTATCAATG
1 ATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATG
** * * * * *
12103226 GATATCTTTTGCTTCACGTTTCCTGATGCAAACAATAAATTATAATATGTTTTAACCAAAAATGA
66 GATGGCTTTCGCTTCACGTTTCCTAATGCAAACAACAAATTATGATCTGTTTTAACCAAAAATGA
* * *
12103291 GAAAGAATTCAATTAAAAATCATTCATAAGATTATAAAACC
131 -AAAAAATTCAATTTAAAATCATTTATAAGATTATAAAACC
* * * *
12103332 ATTTAAAGCAAGTAACATGGCTTTCGAAAGCATGAGTGACTATAAATTGACTTTTCTTGTCAATG
1 ATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATG
* * * * * *
12103397 GATGGCATTCGCTTCACATTTTCTAATGCAAACAATAATTTCT-ATTCTGTTTTAACCAACAAA-
66 GATGGCTTTCGCTTCACGTTTCCTAATGCAAACAACAAATTATGA-TCTGTTTTAACCAA-AAAT
* ** **
12103460 GAAGAAAATTCAATTGCAAATCATTTATAAGATTATAAAATG
129 GAAAAAAATTCAATTTAAAATCATTTATAAGATTATAAAACC
* ** * * *
12103502 ATTTAAAGCGTGCGAGAAGGCTTTCGAAGGCATGAGTGAATATAAATGGACTTTTCCTGTCAATG
1 ATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATG
* * * *
12103567 GATGGCATTCGCTTCACGTTTCTTGATGCAGACAACAAATTATGATCTGTTTTAA-CAAAAATGA
66 GATGGCTTTCGCTTCACGTTTCCTAATGCAAACAACAAATTATGATCTGTTTTAACCAAAAATGA
* *
12103631 AAAATAATTCAATTCAAAATCATTTATAAGATTTTAAAACC
131 AAAA-AATTCAATTTAAAATCATTTATAAGATTATAAAACC
* * * * * * *
12103672 ATTTGAAGCGAGTAAGAAGGCTTTTG-AGAGCATGAATGACTACAGATGAACTTTTCTTGTCAAT
1 ATTTAAAGCGAGTAACAAGGCTTTCGAAG-GCATGAGTGACTATAAATGGACTTTTCTTGTCAAT
* ** * * * *
12103736 GAATGGCTTTCGCTTCTTGTTTCAC-AGTGCAAATAAGAAATTATGATCTGTTTGAACCAAAAAT
65 GGATGGCTTTCGCTTCACGTTTC-CTAATGCAAACAACAAATTATGATCTGTTTTAACCAAAAAT
*
12103800 GAAAAACAAATTCAATTTAAAATCATTTGTAA-AGTTATAAAACC
129 G-AAAA-AAATTCAATTTAAAATCATTTATAAGA-TTATAAAACC
* * * * * *
12103844 ACTTAAAGCAAGTAATAAGGCTTTCAAAGGCATAAGTGACTATAAATGGACTTTTTTTGTCAATG
1 ATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATG
* * * * *
12103909 AATGGCTTTCGCTTCACATTTCCTAATGCAAACAACAAATTATGATTTGTTTTAAACAAAAGTGA
66 GATGGCTTTCGCTTCACGTTTCCTAATGCAAACAACAAATTATGATCTGTTTTAACCAAAAATGA
* *
12103974 ATGAAAAATTAAACTTAAAATCATTTATAAGATTATAAAACC
131 A--AAAAATTCAATTTAAAATCATTTATAAGATTATAAAACC
* * * * * * *
12104016 ATTTAAAGCGAATAAGTAA-GCTTTAGAAGGCATAAGTGACAATAAATGGACTTTTCTTATCTAT
1 ATTTAAAGCGAGTAA-CAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAAT
* * * * *
12104080 AGATGGCTTTCGCTTCACAGTTTCC-AATGCAAACATCAAATTATGACCTATTTTAACTAAAAAT
65 GGATGGCTTTCGCTTCAC-GTTTCCTAATGCAAACAACAAATTATGATCTGTTTTAACCAAAAAT
* *
12104144 GAAAAAAAATTCAACTTAAAATCATTTATAAGAATATAAAACC
129 G-AAAAAAATTCAATTTAAAATCATTTATAAGATTATAAAACC
* ** **
12104187 ATTTAAAGCAAGTAACAAGGCATTT-GAAGGCAT-AGATGACTATAAATAAACTTTTAATGTCAA
1 ATTTAAAGCGAGTAACAAGGC-TTTCGAAGGCATGAG-TGACTATAAATGGACTTTTCTTGTCAA
* * * **
12104250 TGGATGGCTTTCGCTTCGA-GTTTCCCATTGCAAACAATAAATTATGA-CATGTTTTAACCAACG
64 TGGATGGCTTTCGCTTC-ACGTTTCCTAATGCAAACAACAAATTATGATC-TGTTTTAACCAAAA
* * *
12104313 ATGCAAAAAAATT-TAGTT-AAATCATTTATAA-AGTTATAAAACT
127 ATG-AAAAAAATTCAATTTAAAATCATTTATAAGA-TTATAAAACC
* * * *
12104356 ACTTAAAGTGAGTAACAAGACTTTCGAAGGCATGAGTGATTATAAATGGACTTTTCTTGTCAATG
1 ATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATG
** * * *
12104421 GATGGCGCTCGCTTCACGTTT-CTCAATGCAAACAATAAATTATGATTTGTTTTAACAAAAAAAT
66 GATGGCTTTCGCTTCACGTTTCCT-AATGCAAACAACAAATTATGATCTGTTTTAAC-CAAAAAT
* * *
12104485 GAGAAAAATTCAATTTAAAATCATTTGTAAGATTATAAAACA
129 GAAAAAAATTCAATTTAAAATCATTTATAAGATTATAAAACC
12104527 ATTT
1 ATTT
12104531 GTCACGACCC
Statistics
Matches: 1535, Mismatches: 295, Indels: 93
0.80 0.15 0.05
Matches are distributed among these distances:
167 30 0.02
168 108 0.07
169 280 0.18
170 478 0.31
171 343 0.22
172 280 0.18
173 16 0.01
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (170 bp):
ATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATG
GATGGCTTTCGCTTCACGTTTCCTAATGCAAACAACAAATTATGATCTGTTTTAACCAAAAATGA
AAAAAATTCAATTTAAAATCATTTATAAGATTATAAAACC
Found at i:12108978 original size:526 final size:527
Alignment explanation
Indices: 12108199--12109533 Score: 1210
Period size: 526 Copynumber: 2.6 Consensus size: 527
12108189 GTGAGTAACA
*
12108199 AGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCCTGCCAATAGATGGCGTTCACTTCAT
1 AGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCCTGCCAATAGATGGCGTTCACTTCAC
*
12108264 GTTTCCCAATGCAAACAATAAATTATGATATCGTTTAGCCAAGAATGAAAAAAAAATCAATTTAA
66 GTTTCCCAATGCAAACAATAAATTATGATATCGTTTAACCAAGAATGAAAAAAAAATCAATTTAA
* ** * * * * *
12108329 TATCATTTATAAGATTATAAAACCATTTACAGCTAGTAACAAGGCTTTCGAAGAAATGAGTGACT
131 AATCATTTATAAGATTATAAAACCACATAAAGCGAGTAACAAAGCATTCAAAGAAATGAGTGACT
* * ** * * *
12108394 ATTAATGCACTTTTCTTGTCAATGGATGGCGTTTGCTTCGCGTTTCCCAATGCAAACAATAAATT
196 ATAAATGCACTATTCTTGTCAATAAATGGCGTTCGCTTCGCATTTCCCAATACAAACAATAAATT
* * * *
12108459 ATGATCTGTTTTAATAAAAAATTAAAAAAATTTAAATTTAAAATGATTTAT-AAGATTATATAAC
261 ATGATATGTTTTAACAAAAAATGAAAAAAA-TTAAATTTAAAATGATTTATAAAG-TTATAAAAC
* * * * *
12108523 CATTTAAAGCGAGTAATAAAGCTTTCGAAGGCATGAGTGATTATGGATTAACTTTTT-TTGTCAA
324 CATTTAAAGCAAGTAACAAAGCTTTCGAAGGCATGAGTGACTAT-AAATAACTTTTTCTTGTCAA
*
12108587 -TGGATGGCTTTCCCTTCACGTTT-TGTGATGCACACAACAAATTATGATCCTTTTTAATAGAAA
388 TTGG-TGGCTTTCCCTTCACGTTTCT-TGATGCAAACAACAAATTATGATCCTTTTTAATAGAAA
12108650 ATAAATGGAAATTCAACTTCAAATCATTTAGAACATTATACAACCATTTAAAGTGAATAACTAGG
451 ATAAATGGAAATTCAACTTCAAATCATTTAGAACATTATACAACCATTTAAAGTGAATAACTAGG
12108715 CTTTCGAAAGCT
516 CTTTCGAAAGCT
* * * * * * *
12108727 AGGCTTTCGAAGGCATGAGTGACTATAAATGGATTTTTCTTG-TAACTGGGTGGCTTTCACTTCA
1 AGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCCTGCCAA-TAGATGGCGTTCACTTCA
* * * * * * **
12108791 CGTTTCCTAATGTAGAC-ATCAAATTATGATCT-GTTTTAATC-A-AATGAAACAAAGTTCAATT
65 CGTTTCCCAATGCAAACAAT-AAATTATGATATCG-TTTAACCAAGAATGAAAAAAAAATCAATT
* * **
12108852 TAAAATCATTTATAA-AGTTATAAAACCACATAAATCGAGTAATAAAGCATTCAAAGGCATGAGT
128 TAAAATCATTTATAAGA-TTATAAAACCACATAAAGCGAGTAACAAAGCATTCAAAGAAATGAGT
* * **
12108916 GACTATAAATGGACTATTCTTGTCAATAAATGGCGTTCGCTTTGCATTTCCTGATACAAACAATA
192 GACTATAAATGCACTATTCTTGTCAATAAATGGCGTTCGCTTCGCATTTCCCAATACAAACAATA
* * * *
12108981 AATTATGATATGTTTTAACCAAAAGTGAAAAAAATTCAATTTAAAATTATTTATAAAGTTATAAA
257 AATTATGATATGTTTTAACAAAAAATGAAAAAAATTAAATTTAAAATGATTTATAAAGTTATAAA
* * * * * *
12109046 ATCATTTAAAGCAAGTAACAAGGCTTTCGAAGGTATTAGTGACTATAAATGAGTTTTTCTTGTCA
322 ACCATTTAAAGCAAGTAACAAAGCTTTCGAAGGCATGAGTGACTATAAATAACTTTTTCTTGTCA
* * * * *
12109111 ATTGGTGGCTTTCGCTTTAGGTTTCTTGATGTAAACAACAAATTATGAT-CTGTTTGAACTAG-A
387 ATTGGTGGCTTTCCCTTCACGTTTCTTGATGCAAACAACAAATTATGATCCT-TTTTAA-TAGAA
* ** * * * ** *
12109174 AGTGAAA-AAAAATTC-ATTTCAAAATCATTTATAACATTATAAAACCACATAAAG-CAAGTAAC
450 AAT-AAATGGAAATTCAACTTC-AAATCATTTAGAACATTATACAACCATTTAAAGTGAA-TAAC
*
12109236 AAGGC--T-------T
512 TAGGCTTTCGAAAGCT
* * * * ** *
12109243 -----TT-GAAGGCATTAGTGACTATAAATGGACTTTT-CTAGTCAATGGATGGCTTTTGCTTTA
1 AGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCCT-GCCAATAGATGGCGTTCACTTCA
* *** * * * ** * * *
12109301 CATTTCGTGATGCAAAC-ATCGAATTATCATCTTTTTTAACCAAAAATG-AGAAAAATTCAATTT
65 CGTTTCCCAATGCAAACAAT-AAATTATGATATCGTTTAACCAAGAATGAAAAAAAAATCAATTT
** * * * * * ** *
12109364 AAAATCATTTATAA-AGTTATAAAGTCATATAAAGCTAGTAACAAGGCTTTTAAAGGTATAAGTG
129 AAAATCATTTATAAGA-TTATAAAACCACATAAAGCGAGTAACAAAGCATTCAAAGAAATGAGTG
* * * ** * * * * *
12109428 ACTATAAATGGACTTTTCTTCTCAATGGATGGCTTTTGCTTCACGTTTCCCAATGCAAAC-ATGA
193 ACTATAAATGCACTATTCTTGTCAATAAATGGCGTTCGCTTCGCATTTCCCAATACAAACAAT-A
* * *
12109492 AATTATGATATGCTTTAACAAAAAATGAGAAAAATTTAATTT
257 AATTATGATATGTTTTAACAAAAAATGAAAAAAATTAAATTT
12109534 TTAAATCATT
Statistics
Matches: 665, Mismatches: 123, Indels: 55
0.79 0.15 0.07
Matches are distributed among these distances:
509 1 0.00
510 76 0.11
511 156 0.23
512 4 0.01
516 1 0.00
523 1 0.00
524 16 0.02
525 159 0.24
526 162 0.24
527 6 0.01
528 83 0.12
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (527 bp):
AGGCCTTCGAAGGCATGAGTGACTATAAATGGACTTTTCCTGCCAATAGATGGCGTTCACTTCAC
GTTTCCCAATGCAAACAATAAATTATGATATCGTTTAACCAAGAATGAAAAAAAAATCAATTTAA
AATCATTTATAAGATTATAAAACCACATAAAGCGAGTAACAAAGCATTCAAAGAAATGAGTGACT
ATAAATGCACTATTCTTGTCAATAAATGGCGTTCGCTTCGCATTTCCCAATACAAACAATAAATT
ATGATATGTTTTAACAAAAAATGAAAAAAATTAAATTTAAAATGATTTATAAAGTTATAAAACCA
TTTAAAGCAAGTAACAAAGCTTTCGAAGGCATGAGTGACTATAAATAACTTTTTCTTGTCAATTG
GTGGCTTTCCCTTCACGTTTCTTGATGCAAACAACAAATTATGATCCTTTTTAATAGAAAATAAA
TGGAAATTCAACTTCAAATCATTTAGAACATTATACAACCATTTAAAGTGAATAACTAGGCTTTC
GAAAGCT
Found at i:12109108 original size:170 final size:170
Alignment explanation
Indices: 12107881--12109545 Score: 1110
Period size: 171 Copynumber: 9.7 Consensus size: 170
12107871 ATGCGTGATA
* * * * * * * * * *
12107881 ATAAATGAACTTTTCTTTTTAATGGGTGGTTTTCCCTTCACATTTTCTGATGCGAACAACAAATT
1 ATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTTACATTTCCTGATGCAAACATCAAATT
* * * * ** *
12107946 ATGATATGCTTTAATCAAAAAT-AAAAAGCAATTCAATTTAGAATTGTTTA-AAAGATTATCAAA
66 ATGATCTGTTTTAACCAAAAATGAAAAA--AATTCAATTTAAAATCATTTATAAAG-TTATAAAA
* ** * * *
12108009 TCATTTAAAGCAAGTAACGAGGCCTTCAAAGGCATCAGTGACT
128 CCACATAAAGCAAGTAACAAGGCTTTCAAAGGCATTAGTGACT
* * ** * * * *
12108052 ATAAATGGACTTTGCTT-TCCAATGGATGGCTGTCGCTACACTTTTCCT-AAGTCAAATATCCAA
1 ATAAATGGACTTTTCTTGT-CAATGGATGGCTTTCGCTTTACATTTCCTGATG-CAAACATCAAA
* * * * * ** *
12108115 CTATGACCTATTTTAA-TAAGAAATGAAAGAAATTTTGATTTAAAAACATTTAT-AAGATTATAA
64 TTATGATCTGTTTTAACCAA-AAATGAAA-AAAATTCAATTTAAAATCATTTATAAAG-TTATAA
** ** * * *
12108178 AACCATTTAAAGTGAGTAACAAGGCCTTCGAAGGCATGAGTGACT
126 AACCACATAAAGCAAGTAACAAGGCTTTCAAAGGCATTAGTGACT
* * * * * * ** **
12108223 ATAAATGGACTTTTCCTGCCAATAGATGGCGTTCACTTCATGTTTCCCAATGCAAACAAT-AAAT
1 ATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTTACATTTCCTGATGCAAAC-ATCAAAT
* * * * *
12108287 TATGATATCG-TTTAGCCAAGAATGAAAAAAAAATCAATTTAATATCATTTAT-AAGATTATAAA
65 TATGATCT-GTTTTAACCAAAAATG-AAAAAAATTCAATTTAAAATCATTTATAAAG-TTATAAA
** * * * ** *
12108350 ACCATTTACAGCTAGTAACAAGGCTTTCGAAGAAATGAGTGACT
127 ACCACATAAAGCAAGTAACAAGGCTTTCAAAGGCATTAGTGACT
* * ** * **
12108394 ATTAATGCACTTTTCTTGTCAATGGATGGCGTTT-GCTTCGCGTTTCCCAATGCAAACAAT-AAA
1 ATAAATGGACTTTTCTTGTCAATGGATGGC-TTTCGCTTTACATTTCCTGATGCAAAC-ATCAAA
** * * * *
12108457 TTATGATCTGTTTTAATAAAAAATTAAAAAAATTTAAATTTAAAATGATTTAT-AAGATTATATA
64 TTATGATCTGTTTTAACCAAAAATGAAAAAAA-TTCAATTTAAAATCATTTATAAAG-TTATAAA
** * * * * * *
12108521 ACCATTTAAAGCGAGTAATAAAGCTTTCGAAGGCATGAGTGATT
127 ACCACATAAAGCAAGTAACAAGGCTTTCAAAGGCATTAGTGACT
** ** * * * * ** * *
12108565 ATGGATTAACTTTTTTTGTCAATGGATGGCTTTCCCTTCACGTTTTGTGATGCACACAACAAATT
1 ATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTTACATTTCCTGATGCAAACATCAAATT
* * * * * *
12108630 ATGATCCT-TTTTAA-TAGAAAAT-AAATGGAAATTCAACTTCAAATCATTTAGAACA-TTATAC
66 ATGAT-CTGTTTTAACCA-AAAATGAAA--AAAATTCAATTTAAAATCATTTATAA-AGTTATAA
* * * * * *
12108691 AACCATTTAAAGTGAATAACTAGGCTTTCGAAAGCTAGGCTTTCGAAGGCATGAGTGACT
126 AACC----ACA-T-AA-AGC-AAG---T---AA-CAAGGCTTTCAAAGGCATTAGTGACT
* * * * * * * *
12108751 ATAAATGGATTTTTCTTGT-AACTGGGTGGCTTTCACTTCACGTTTCCTAATGTAGACATCAAAT
1 ATAAATGGACTTTTCTTGTCAA-TGGATGGCTTTCGCTTTACATTTCCTGATGCAAACATCAAAT
* *
12108815 TATGATCTGTTTTAATC--AAATGAAACAAAGTTCAATTTAAAATCATTTATAAAGTTATAAAAC
65 TATGATCTGTTTTAACCAAAAATGAAA-AAAATTCAATTTAAAATCATTTATAAAGTTATAAAAC
* * * * * *
12108878 CACATAAATCGAGTAATAAAGCATTCAAAGGCATGAGTGACT
129 CACATAAAGCAAGTAACAAGGCTTTCAAAGGCATTAGTGACT
* ** * * *
12108920 ATAAATGGACTATTCTTGTCAATAAATGGCGTTCGCTTTGCATTTCCTGATACAAACAAT-AAAT
1 ATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTTACATTTCCTGATGCAAAC-ATCAAAT
* * * *
12108984 TATGATATGTTTTAACCAAAAGTGAAAAAAATTCAATTTAAAATTATTTATAAAGTTATAAAATC
65 TATGATCTGTTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACC
** * *
12109049 ATTTAAAGCAAGTAACAAGGCTTTCGAAGGTATTAGTGACT
130 ACATAAAGCAAGTAACAAGGCTTTCAAAGGCATTAGTGACT
* ** * * *
12109090 ATAAAT-GAGTTTTTCTTGTCAATTGG-TGGCTTTCGCTTTAGGTTTCTTGATGTAAACAACAAA
1 ATAAATGGA-CTTTTCTTGTCAA-TGGATGGCTTTCGCTTTACATTTCCTGATGCAAACATCAAA
* * * *
12109153 TTATGATCTGTTTGAACTAGAAGTGAAAAAAAATTC-ATTTCAAAATCATTTATAACA-TTATAA
64 TTATGATCTGTTTTAACCAAAAATG-AAAAAAATTCAATTT-AAAATCATTTATAA-AGTTATAA
**
12109216 AACCACATAAAGCAAGTAACAAGGCTTTTGAAGGCATTAGTGACT
126 AACCACATAAAGCAAGTAACAAGGCTTTCAAAGGCATTAGTGACT
* * * *
12109261 ATAAATGGACTTTTCTAGTCAATGGATGGCTTTTGCTTTACATTTCGTGATGCAAACATCGAATT
1 ATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTTACATTTCCTGATGCAAACATCAAATT
* * * **
12109326 ATCATCTTTTTTAACCAAAAATGAGAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAGTCA
66 ATGATCTGTTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCA
* * * * *
12109391 TATAAAGCTAGTAACAAGGCTTTTAAAGGTATAAGTGACT
131 CATAAAGCAAGTAACAAGGCTTTCAAAGGCATTAGTGACT
* * * * ** *
12109431 ATAAATGGACTTTTCTTCTCAATGGATGGCTTTTGCTTCACGTTTCCCAATGCAAACATGAAATT
1 ATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTTACATTTCCTGATGCAAACATCAAATT
* * * * * *
12109496 ATGATATGCTTTAACAAAAAATGAGAAAAATTTAATTTTTAAATCATTTA
66 ATGATCTGTTTTAACCAAAAATGAAAAAAATTCAA-TTTAAAATCATTTA
12109546 AAGTGAGTAA
Statistics
Matches: 1189, Mismatches: 247, Indels: 116
0.77 0.16 0.07
Matches are distributed among these distances:
169 84 0.07
170 317 0.27
171 620 0.52
172 23 0.02
173 4 0.00
175 1 0.00
176 2 0.00
177 4 0.00
178 4 0.00
179 2 0.00
180 2 0.00
182 1 0.00
183 1 0.00
184 34 0.03
185 9 0.01
186 81 0.07
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.34
Consensus pattern (170 bp):
ATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTTACATTTCCTGATGCAAACATCAAATT
ATGATCTGTTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCA
CATAAAGCAAGTAACAAGGCTTTCAAAGGCATTAGTGACT
Found at i:12110660 original size:25 final size:25
Alignment explanation
Indices: 12110632--12110691 Score: 93
Period size: 25 Copynumber: 2.4 Consensus size: 25
12110622 GTGGTCGCAA
* *
12110632 CCACGTATATCAACTCGTGGCCTTG
1 CCACGTATAACAACCCGTGGCCTTG
12110657 CCACGTATAACAACCCGTGGCCTTG
1 CCACGTATAACAACCCGTGGCCTTG
*
12110682 CCATGTATAA
1 CCACGTATAA
12110692 TCACAGACCA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (25 bp):
CCACGTATAACAACCCGTGGCCTTG
Found at i:12111707 original size:19 final size:20
Alignment explanation
Indices: 12111685--12111722 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
12111675 ATGGCAGCAA
*
12111685 CAATCA-TTCCAATCTTACT
1 CAATCATTTCCAAGCTTACT
*
12111704 CAATTATTTCCAAGCTTAC
1 CAATCATTTCCAAGCTTAC
12111723 ATGCATAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.32, C:0.29, G:0.03, T:0.37
Consensus pattern (20 bp):
CAATCATTTCCAAGCTTACT
Found at i:12112331 original size:45 final size:45
Alignment explanation
Indices: 12112267--12112364 Score: 189
Period size: 45 Copynumber: 2.2 Consensus size: 45
12112257 CTTACCCTTG
12112267 TTTCTCTTGAACCAAGCTTTCCTCTTTCCTTAAGTTCCACAGTTC
1 TTTCTCTTGAACCAAGCTTTCCTCTTTCCTTAAGTTCCACAGTTC
12112312 TTTCTCTTGAACCAAGCTTTCCTCTTTCCTTAAGTTCCACAGTTC
1 TTTCTCTTGAACCAAGCTTTCCTCTTTCCTTAAGTTCCACAGTTC
12112357 -TTCTCTTG
1 TTTCTCTTG
12112365 CATGTTGAAG
Statistics
Matches: 53, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
44 8 0.15
45 45 0.85
ACGTcount: A:0.16, C:0.31, G:0.09, T:0.44
Consensus pattern (45 bp):
TTTCTCTTGAACCAAGCTTTCCTCTTTCCTTAAGTTCCACAGTTC
Done.