Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36364294
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2168405 characters in sequence are not A, C, G, or T
File 53 of 91
Found at i:18710620 original size:33 final size:33
Alignment explanation
Indices: 18710468--18710620 Score: 121
Period size: 34 Copynumber: 4.5 Consensus size: 33
18710458 AAAGAAAGTA
* ** *
18710468 AAGAAAAAGAGAAAAGAAATGCCGAG-TGGAGGAG
1 AAGAAAAAGAGAAAAG-AAGGTTG-GCTGGAAGAG
* *
18710502 AAGAAAAAGAGAGAAGAAAGGTTGGCTGGAGGAG
1 AAGAAAAAGAGAAAAG-AAGGTTGGCTGGAAGAG
* *
18710536 AAGAAAAAGGGAAAATGAAGGTTGGCTGGAAAAG
1 AAGAAAAAGAGAAAA-GAAGGTTGGCTGGAAGAG
* * * *
18710570 -TGAAAAAGGGAAAAAGAAGGCTGGTTGGAAGAG
1 AAGAAAAAGAG-AAAAGAAGGTTGGCTGGAAGAG
* *
18710603 AAAAAAAAGAGATAAGAA
1 AAGAAAAAGAGAAAAGAA
18710621 AAGGAATAAG
Statistics
Matches: 99, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
33 31 0.31
34 67 0.68
35 1 0.01
ACGTcount: A:0.52, C:0.03, G:0.35, T:0.09
Consensus pattern (33 bp):
AAGAAAAAGAGAAAAGAAGGTTGGCTGGAAGAG
Found at i:18711409 original size:32 final size:32
Alignment explanation
Indices: 18711372--18711567 Score: 196
Period size: 32 Copynumber: 5.9 Consensus size: 32
18711362 CCTTTAGCAA
** *
18711372 TGGTTTTTCACGGGATCAACCAAAACCCAAAG
1 TGGTTTTTCAAAGGCTCAACCAAAACCCAAAG
*
18711404 TGGTTTTTCAAAGGCTCAACCAAAACCCTAAG
1 TGGTTTTTCAAAGGCTCAACCAAAACCCAAAG
* * *
18711436 TGGTTTTTCAAAGGCTCAACCACAACCTTTAACAA
1 TGGTTTTTCAAAGGCTCAACCAAAACC--CAA-AG
**
18711471 TGGTTTTTCACGGGCTCAACCAAAACCCAAAG
1 TGGTTTTTCAAAGGCTCAACCAAAACCCAAAG
* * *
18711503 TGATTTTTCAAAGGCTCAACCACAACCTACAACAA
1 TGGTTTTTCAAAGGCTCAACCAAAACC--CAA-AG
* *
18711538 TGGTTTTT-ACCAGGATCAACCAAAACCCAA
1 TGGTTTTTCA-AAGGCTCAACCAAAACCCAA
18711568 CAACCAACTT
Statistics
Matches: 135, Mismatches: 22, Indels: 13
0.79 0.13 0.08
Matches are distributed among these distances:
32 78 0.58
33 5 0.04
34 5 0.04
35 47 0.35
ACGTcount: A:0.35, C:0.27, G:0.14, T:0.24
Consensus pattern (32 bp):
TGGTTTTTCAAAGGCTCAACCAAAACCCAAAG
Found at i:18711489 original size:67 final size:67
Alignment explanation
Indices: 18711404--18711567 Score: 249
Period size: 67 Copynumber: 2.4 Consensus size: 67
18711394 AAACCCAAAG
* * * **
18711404 TGGTTTTTCAAAGGCTCAACCAAAACCCTAAGTGGTTTTTCAAAGGCTCAACCACAACCTTTAAC
1 TGGTTTTTCACAGGCTCAACCAAAACCCAAAGTGATTTTTCAAAGGCTCAACCACAACCTACAAC
18711469 AA
66 AA
*
18711471 TGGTTTTTCACGGGCTCAACCAAAACCCAAAGTGATTTTTCAAAGGCTCAACCACAACCTACAAC
1 TGGTTTTTCACAGGCTCAACCAAAACCCAAAGTGATTTTTCAAAGGCTCAACCACAACCTACAAC
18711536 AA
66 AA
*
18711538 TGGTTTTT-ACCAGGATCAACCAAAACCCAA
1 TGGTTTTTCA-CAGGCTCAACCAAAACCCAA
18711568 CAACCAACTT
Statistics
Matches: 88, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
66 1 0.01
67 87 0.99
ACGTcount: A:0.35, C:0.27, G:0.13, T:0.24
Consensus pattern (67 bp):
TGGTTTTTCACAGGCTCAACCAAAACCCAAAGTGATTTTTCAAAGGCTCAACCACAACCTACAAC
AA
Found at i:18716865 original size:31 final size:29
Alignment explanation
Indices: 18716826--18716898 Score: 92
Period size: 29 Copynumber: 2.4 Consensus size: 29
18716816 TACTTGTTAT
18716826 TATAGATATTCAATATATTTTGCTTAGCTAC
1 TATAGATATT--ATATATTTTGCTTAGCTAC
* * * *
18716857 TGTGGATATTGTATATTTTGTTTAGCTAC
1 TATAGATATTATATATTTTGCTTAGCTAC
18716886 TATAGATATTATA
1 TATAGATATTATA
18716899 AATATTTTAT
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
29 27 0.77
31 8 0.23
ACGTcount: A:0.30, C:0.08, G:0.14, T:0.48
Consensus pattern (29 bp):
TATAGATATTATATATTTTGCTTAGCTAC
Found at i:18718630 original size:80 final size:80
Alignment explanation
Indices: 18718497--18718769 Score: 386
Period size: 80 Copynumber: 3.4 Consensus size: 80
18718487 TGGGACCAAC
* *
18718497 AGATGTATGTGTTGGGATAGTCATATACATTATGGGCTAAGCATGTGAGTTATTTATGAAGTTAT
1 AGATGTATGTGTTGAGATAGTCATATACACTATGGGCTAAGCATGTGAGTTATTTATGAAGTTAT
18718562 GAAATGTATGCCATG
66 GAAATGTATGCCATG
* *
18718577 AGATGTATGTGGTGGGATAGTCATATACACTATGGGCTAAGCATGTGAGTTATTTATG-AGATTA
1 AGATGTATGTGTTGAGATAGTCATATACACTATGGGCTAAGCATGTGAGTTATTTATGAAG-TTA
* *
18718641 TGAAATGCATGCCATA
65 TGAAATGTATGCCATG
* * * * * * * *
18718657 AGATGTATGTGCTGAAATAGTCATATACACTATGGGTTAAGTATGTAAGTGATTTATGAGGTCAT
1 AGATGTATGTGTTGAGATAGTCATATACACTATGGGCTAAGCATGTGAGTTATTTATGAAGTTAT
18718722 GAAATGTATGCCATG
66 GAAATGTATGCCATG
* *
18718737 AGATATATGTGTTGAGATAATCATATACACTAT
1 AGATGTATGTGTTGAGATAGTCATATACACTAT
18718770 AGACTACATA
Statistics
Matches: 172, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
79 2 0.01
80 169 0.98
81 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.25, T:0.34
Consensus pattern (80 bp):
AGATGTATGTGTTGAGATAGTCATATACACTATGGGCTAAGCATGTGAGTTATTTATGAAGTTAT
GAAATGTATGCCATG
Found at i:18723367 original size:8 final size:8
Alignment explanation
Indices: 18723343--18723401 Score: 50
Period size: 8 Copynumber: 7.2 Consensus size: 8
18723333 AAAAAAATTG
18723343 ATAATTTTA
1 ATAA-TTTA
18723352 ATTAATTTA
1 A-TAATTTA
*
18723361 ATAATTTT
1 ATAATTTA
18723369 ATATATTTA
1 ATA-ATTTA
* *
18723378 ATTATATA
1 ATAATTTA
18723386 A-AA-TTA
1 ATAATTTA
18723392 ATAATTTA
1 ATAATTTA
18723400 AT
1 AT
18723402 TATCAATAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
6 3 0.08
7 3 0.08
8 19 0.47
9 12 0.30
10 3 0.08
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (8 bp):
ATAATTTA
Found at i:18723517 original size:15 final size:17
Alignment explanation
Indices: 18723487--18723526 Score: 57
Period size: 15 Copynumber: 2.4 Consensus size: 17
18723477 GAATTAAATC
18723487 ATAAAATAATTTTATTA
1 ATAAAATAATTTTATTA
18723504 ATAAAA-AA-TTTATTA
1 ATAAAATAATTTTATTA
18723519 AGTAAAAT
1 A-TAAAAT
18723527 TATAAAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
15 8 0.38
16 7 0.33
17 6 0.29
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (17 bp):
ATAAAATAATTTTATTA
Found at i:18724213 original size:34 final size:34
Alignment explanation
Indices: 18724174--18724249 Score: 134
Period size: 34 Copynumber: 2.2 Consensus size: 34
18724164 GTATAGCTGC
* *
18724174 ATATTCAAATAAATGCGAGATAAATTAACTCAGG
1 ATATTCAAATAAATGCAAGATAAATTAACTCAAG
18724208 ATATTCAAATAAATGCAAGATAAATTAACTCAAG
1 ATATTCAAATAAATGCAAGATAAATTAACTCAAG
18724242 ATATTCAA
1 ATATTCAA
18724250 TGAAAATTTC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.50, C:0.12, G:0.11, T:0.28
Consensus pattern (34 bp):
ATATTCAAATAAATGCAAGATAAATTAACTCAAG
Found at i:18726021 original size:27 final size:29
Alignment explanation
Indices: 18725962--18726026 Score: 98
Period size: 29 Copynumber: 2.3 Consensus size: 29
18725952 GTTAAAAAGG
**
18725962 TTGTTACACTTCATATTTAAAAAATATTA
1 TTGTTACACCCCATATTTAAAAAATATTA
18725991 TTGTTACACCCCATATTT-AAAAATATT-
1 TTGTTACACCCCATATTTAAAAAATATTA
18726018 TTGTTACAC
1 TTGTTACAC
18726027 TTTAATGCTT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
27 9 0.26
28 9 0.26
29 16 0.47
ACGTcount: A:0.37, C:0.15, G:0.05, T:0.43
Consensus pattern (29 bp):
TTGTTACACCCCATATTTAAAAAATATTA
Found at i:18731585 original size:2 final size:2
Alignment explanation
Indices: 18731578--18731667 Score: 120
Period size: 2 Copynumber: 47.5 Consensus size: 2
18731568 TAAAAGGTGA
*
18731578 AT AT AT AT -T AT -T AT AT AT -T A- AT AA AT ACT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT
18731617 AT AT AT AT AT AT A- AT A- AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
18731657 AT AT AT AT AT A
1 AT AT AT AT AT A
18731668 AAAGGGGAAA
Statistics
Matches: 79, Mismatches: 2, Indels: 14
0.83 0.02 0.15
Matches are distributed among these distances:
1 6 0.08
2 71 0.90
3 2 0.03
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:18748123 original size:2 final size:2
Alignment explanation
Indices: 18748116--18748182 Score: 116
Period size: 2 Copynumber: 33.5 Consensus size: 2
18748106 AATACATACC
* *
18748116 AT AT AT AT TT AG AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
18748158 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
18748183 CACAGGGCAC
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 61 1.00
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (2 bp):
AT
Found at i:18762627 original size:13 final size:13
Alignment explanation
Indices: 18762609--18762634 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
18762599 AGAGCAGTTA
18762609 GTCGACTAACTTG
1 GTCGACTAACTTG
18762622 GTCGACTAACTTG
1 GTCGACTAACTTG
18762635 ATTCTGTTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (13 bp):
GTCGACTAACTTG
Found at i:18764754 original size:10 final size:11
Alignment explanation
Indices: 18764739--18764768 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
18764729 AAAGATCCAC
18764739 TCAAAAAAA-T
1 TCAAAAAAATT
18764749 TCAAAAAAATT
1 TCAAAAAAATT
18764760 TCAAAAAAA
1 TCAAAAAAA
18764769 ATCACAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.70, C:0.10, G:0.00, T:0.20
Consensus pattern (11 bp):
TCAAAAAAATT
Found at i:18771473 original size:2 final size:2
Alignment explanation
Indices: 18771463--18771497 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
18771453 ACACATTTAC
*
18771463 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
18771498 NNNNNNNNNN
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:18776727 original size:20 final size:20
Alignment explanation
Indices: 18776699--18776736 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
18776689 AATGGAGGAA
*
18776699 GAAACAGAAACTGAAAATAT
1 GAAAAAGAAACTGAAAATAT
*
18776719 GAAAAAGAAATTGAAAAT
1 GAAAAAGAAACTGAAAAT
18776737 CATGTCTGGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.63, C:0.05, G:0.16, T:0.16
Consensus pattern (20 bp):
GAAAAAGAAACTGAAAATAT
Found at i:18788376 original size:21 final size:21
Alignment explanation
Indices: 18788335--18788376 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
18788325 ATATTTTCTC
* *
18788335 TTTTTTGTTATTTTTATTTTA
1 TTTTTTGTTATTTCTAGTTTA
18788356 TTTTTT-TATATTTCTAGTTTA
1 TTTTTTGT-TATTTCTAGTTTA
18788377 ATCTCTATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.17, C:0.02, G:0.05, T:0.76
Consensus pattern (21 bp):
TTTTTTGTTATTTCTAGTTTA
Found at i:18790806 original size:38 final size:40
Alignment explanation
Indices: 18790717--18790823 Score: 155
Period size: 38 Copynumber: 2.7 Consensus size: 40
18790707 CACACCCGGC
*
18790717 TCATGTACATCCCCCCACATCGTGCACACAGTCGGCACCA
1 TCATGTACATCCCCCCACATCGTGCACACAGTCAGCACCA
* * **
18790757 TCGTGTGCATCCCCCCACATCGTGCACA-A-TCAGTGCCA
1 TCATGTACATCCCCCCACATCGTGCACACAGTCAGCACCA
18790795 TCATGTACATCCCCCCACATCGTGCACAC
1 TCATGTACATCCCCCCACATCGTGCACAC
18790824 GGGCACTATC
Statistics
Matches: 59, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
38 32 0.54
39 1 0.02
40 26 0.44
ACGTcount: A:0.23, C:0.42, G:0.15, T:0.20
Consensus pattern (40 bp):
TCATGTACATCCCCCCACATCGTGCACACAGTCAGCACCA
Found at i:18790881 original size:71 final size:71
Alignment explanation
Indices: 18790797--18790965 Score: 320
Period size: 71 Copynumber: 2.4 Consensus size: 71
18790787 CAGTGCCATC
*
18790797 ATGTACATCCCCCCACATCGTGCACACGGGCACTATCATCATCCACCTCTCACGCCACCATTATC
1 ATGTGCATCCCCCCACATCGTGCACACGGGCACTATCATCATCCACCTCTCACGCCACCATTATC
18790862 ACCGGT
66 ACCGGT
*
18790868 ATGTGCATCCCCCCACATCATGCACACGGGCACTATCATCATCCACCTCTCACGCCACCATTATC
1 ATGTGCATCCCCCCACATCGTGCACACGGGCACTATCATCATCCACCTCTCACGCCACCATTATC
18790933 ACCGGT
66 ACCGGT
18790939 ATGTGCATCCCCCCACATCGTGCACAC
1 ATGTGCATCCCCCCACATCGTGCACAC
18790966 ACACGGTTAC
Statistics
Matches: 95, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 95 1.00
ACGTcount: A:0.24, C:0.43, G:0.13, T:0.21
Consensus pattern (71 bp):
ATGTGCATCCCCCCACATCGTGCACACGGGCACTATCATCATCCACCTCTCACGCCACCATTATC
ACCGGT
Found at i:18797940 original size:14 final size:15
Alignment explanation
Indices: 18797921--18797949 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
18797911 GATTAATATA
18797921 AATTTA-AATCAATT
1 AATTTATAATCAATT
18797935 AATTTATAATCAATT
1 AATTTATAATCAATT
18797950 CTATAGACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (15 bp):
AATTTATAATCAATT
Found at i:18809931 original size:16 final size:17
Alignment explanation
Indices: 18809899--18809931 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
18809889 ATTTAGGTAA
*
18809899 AATATGAAAACATTTTT
1 AATAAGAAAACATTTTT
18809916 AATAAGAAAA-ATTTTT
1 AATAAGAAAACATTTTT
18809932 GCTAATGCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.52, C:0.03, G:0.06, T:0.39
Consensus pattern (17 bp):
AATAAGAAAACATTTTT
Found at i:18811447 original size:20 final size:20
Alignment explanation
Indices: 18811420--18811478 Score: 91
Period size: 20 Copynumber: 3.0 Consensus size: 20
18811410 GGCAAAACGC
*
18811420 TCTTAGTCGATTAACTTATG
1 TCTTAGTCGACTAACTTATG
*
18811440 TGTTAGTCGACTAACTTATG
1 TCTTAGTCGACTAACTTATG
*
18811460 TCTTAGTCGACTAAGTTAT
1 TCTTAGTCGACTAACTTAT
18811479 CTCTGTTTTC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.25, C:0.15, G:0.17, T:0.42
Consensus pattern (20 bp):
TCTTAGTCGACTAACTTATG
Found at i:18812389 original size:26 final size:26
Alignment explanation
Indices: 18812340--18812391 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18812330 GAAACTCAAT
*
18812340 GGCAAATACTCCAAAAATAGATTTAA
1 GGCAAATACTCCAAAAACAGATTTAA
* *
18812366 GGCAAATACTCCAATAACATATTTAA
1 GGCAAATACTCCAAAAACAGATTTAA
18812392 ATATTCAACC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.48, C:0.17, G:0.10, T:0.25
Consensus pattern (26 bp):
GGCAAATACTCCAAAAACAGATTTAA
Found at i:18813311 original size:18 final size:16
Alignment explanation
Indices: 18813288--18813332 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 16
18813278 AAATGGGAGA
18813288 AATAAAAAATAAATAAAT
1 AATAAAAAAT-AAT-AAT
18813306 AATAAAATAATAATAAT
1 AATAAAA-AATAATAAT
18813323 AATTAAAAAA
1 AA-TAAAAAA
18813333 AAAAGAGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 7 0.28
18 15 0.60
19 3 0.12
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (16 bp):
AATAAAAAATAATAAT
Found at i:18813597 original size:23 final size:23
Alignment explanation
Indices: 18813529--18813606 Score: 77
Period size: 23 Copynumber: 3.3 Consensus size: 23
18813519 GGAAAGTTGA
*
18813529 AGAATAAAGGAAAGAAAAAGAAG
1 AGAAAAAAGGAAAGAAAAAGAAG
** *
18813552 AGAAACAAACGAGGGAGAGAAAG-AG
1 AGAAA-AAA-G-GAAAGAAAAAGAAG
18813577 AAGAAAAAAGGAAAGAAAAAGAAG
1 -AGAAAAAAGGAAAGAAAAAGAAG
18813601 AGAAAA
1 AGAAAA
18813607 GCCGAGTGGT
Statistics
Matches: 43, Mismatches: 7, Indels: 10
0.72 0.12 0.17
Matches are distributed among these distances:
23 18 0.42
24 6 0.14
25 6 0.14
26 13 0.30
ACGTcount: A:0.68, C:0.03, G:0.28, T:0.01
Consensus pattern (23 bp):
AGAAAAAAGGAAAGAAAAAGAAG
Found at i:18813728 original size:35 final size:34
Alignment explanation
Indices: 18813669--18813753 Score: 118
Period size: 35 Copynumber: 2.5 Consensus size: 34
18813659 TTTTAGGGGA
18813669 TGGTTTTGCTGCCATTTAGGGAGGAAAGGAGAGC
1 TGGTTTTGCTGCCATTTAGGGAGGAAAGGAGAGC
* *
18813703 TGGTTTTGCTGTCCTTTTAGGGAGGAAAGGAGTGC
1 TGGTTTTGCTG-CCATTTAGGGAGGAAAGGAGAGC
* *
18813738 T-ATTTTTCTGCCATTT
1 TGGTTTTGCTGCCATTT
18813754 TAAAGGAGAG
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
33 5 0.11
34 18 0.40
35 22 0.49
ACGTcount: A:0.19, C:0.13, G:0.32, T:0.36
Consensus pattern (34 bp):
TGGTTTTGCTGCCATTTAGGGAGGAAAGGAGAGC
Found at i:18813832 original size:34 final size:35
Alignment explanation
Indices: 18813784--18813874 Score: 96
Period size: 36 Copynumber: 2.6 Consensus size: 35
18813774 TCTTTGAGGT
* * * *
18813784 TTTGGCTG-TCGATTTT-GAGGGTGAGATGAGCAGC
1 TTTGGCTGCT-GATTTTAGAGGCTGAAAGGAGCAAC
*
18813818 TTTGGCTGCTGATTTTTAAAGGCTGAAAGGAGCAAC
1 TTTGGCTGCTGA-TTTTAGAGGCTGAAAGGAGCAAC
*
18813854 TTTGGTTGCTGATTTTAGAGG
1 TTTGGCTGCTGATTTTAGAGG
18813875 TTTTGGCTGT
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
34 10 0.21
35 13 0.28
36 24 0.51
ACGTcount: A:0.21, C:0.11, G:0.33, T:0.35
Consensus pattern (35 bp):
TTTGGCTGCTGATTTTAGAGGCTGAAAGGAGCAAC
Found at i:18813936 original size:35 final size:35
Alignment explanation
Indices: 18813888--18813978 Score: 128
Period size: 35 Copynumber: 2.6 Consensus size: 35
18813878 TGGCTGTTTA
* **
18813888 TTTTGAGGGTGAAATGAGCAGCTTTGGCTGCTGAT
1 TTTTGAGGTTGAAATGAGCAGCTTTGGCAACTGAT
* *
18813923 TTTTGAGGTTGAAATGAGTAGTTTTGGCAACTGAT
1 TTTTGAGGTTGAAATGAGCAGCTTTGGCAACTGAT
*
18813958 TTTTGAGGTTGAAAGGAGCAG
1 TTTTGAGGTTGAAATGAGCAG
18813979 AAACTTGCTA
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 49 1.00
ACGTcount: A:0.24, C:0.08, G:0.33, T:0.35
Consensus pattern (35 bp):
TTTTGAGGTTGAAATGAGCAGCTTTGGCAACTGAT
Found at i:18824185 original size:21 final size:21
Alignment explanation
Indices: 18824161--18824200 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
18824151 GGACAAAATG
*
18824161 CTCTTAGTTGACTAAGTGCTT
1 CTCTTAGTCGACTAAGTGCTT
18824182 CTCTTAGTCGACTAAGTGC
1 CTCTTAGTCGACTAAGTGC
18824201 CTACTATCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.38
Consensus pattern (21 bp):
CTCTTAGTCGACTAAGTGCTT
Found at i:18831936 original size:28 final size:27
Alignment explanation
Indices: 18831900--18831952 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
18831890 ATATCCTGGT
*
18831900 GGTGGAAAATTACAATTTTGCCCCTGA
1 GGTGGAAAATTACAATTTTACCCCTGA
*
18831927 GGTGGCAAAATTACCATTTTACCCCT
1 GGTGG-AAAATTACAATTTTACCCCT
18831953 ATACTCCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 5 0.22
28 18 0.78
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (27 bp):
GGTGGAAAATTACAATTTTACCCCTGA
Found at i:18832020 original size:20 final size:20
Alignment explanation
Indices: 18831997--18832042 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
18831987 CTTCTAAACC
*
18831997 TCAAATCATACTTCAATAAG
1 TCAAATCATACTCCAATAAG
*
18832017 TCAAATTATACTCCAATAAG
1 TCAAATCATACTCCAATAAG
18832037 TCAAAT
1 TCAAAT
18832043 GGGGTCAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.46, C:0.20, G:0.04, T:0.30
Consensus pattern (20 bp):
TCAAATCATACTCCAATAAG
Found at i:18833198 original size:15 final size:16
Alignment explanation
Indices: 18833168--18833201 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
18833158 AAACTGAAGA
18833168 AAATATAAATAAAATT
1 AAATATAAATAAAATT
*
18833184 AAATATGAA-AAAATT
1 AAATATAAATAAAATT
18833199 AAA
1 AAA
18833202 AAATTATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (16 bp):
AAATATAAATAAAATT
Found at i:18833797 original size:33 final size:33
Alignment explanation
Indices: 18833760--18833822 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 33
18833750 ACAAAATGAC
* *
18833760 GGGAGATCGATCTTGGATGCACCGTCGCTTGAT
1 GGGAGATCGATCTTGAATGCACCATCGCTTGAT
*
18833793 GGGAGATCGATCTTGAATGTACCATCGCTT
1 GGGAGATCGATCTTGAATGCACCATCGCTT
18833823 AACTTCTGAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (33 bp):
GGGAGATCGATCTTGAATGCACCATCGCTTGAT
Found at i:18837445 original size:30 final size:30
Alignment explanation
Indices: 18837409--18837473 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 30
18837399 GATTGAGGAC
*
18837409 GAAGAAGATGACATGCAAAGG-GATGAAGAT
1 GAAGAAGATGACATG-AAAGGAGATGAAAAT
*
18837439 GAAGAAGATGACATGGAAGGAGATGAAAAT
1 GAAGAAGATGACATGAAAGGAGATGAAAAT
18837469 GAAGA
1 GAAGA
18837474 TGAAGATGTG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
29 4 0.12
30 28 0.88
ACGTcount: A:0.49, C:0.05, G:0.34, T:0.12
Consensus pattern (30 bp):
GAAGAAGATGACATGAAAGGAGATGAAAAT
Found at i:18845271 original size:21 final size:21
Alignment explanation
Indices: 18845247--18845286 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
18845237 TCAAATATGG
* *
18845247 TCTTTTATAGTTGACTATGCT
1 TCTTCTATAGTCGACTATGCT
18845268 TCTTCTATAGTCGACTATG
1 TCTTCTATAGTCGACTATG
18845287 GCCATGTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.47
Consensus pattern (21 bp):
TCTTCTATAGTCGACTATGCT
Found at i:18845348 original size:72 final size:72
Alignment explanation
Indices: 18845271--18845443 Score: 240
Period size: 72 Copynumber: 2.4 Consensus size: 72
18845261 CTATGCTTCT
* * * *
18845271 TCTATAGTCGACTATGGCCATGTAATCTTGACTTTTTTTGGCC-TTTGACTAGTCAGAGTCAACT
1 TCTATAGTCGACTATGGCTATGTAATCTTGACTTTTCTT-GCCTTTTAACTAGTAAGAGTCAACT
18845335 ATACCTCC
65 ATACCTCC
* *
18845343 TCTATAGTCGACTATGGCTATGTAATCTTGACTTTTCTTGCCTTTTAACTTGTAAGAGTCGACTA
1 TCTATAGTCGACTATGGCTATGTAATCTTGACTTTTCTTGCCTTTTAACTAGTAAGAGTCAACTA
* *
18845408 TGCTTCC
66 TACCTCC
* *
18845415 TCTGTAGTCGACTATGGCTATGAAATCTT
1 TCTATAGTCGACTATGGCTATGTAATCTT
18845444 CAATTTTTAC
Statistics
Matches: 90, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
71 3 0.03
72 87 0.97
ACGTcount: A:0.22, C:0.21, G:0.17, T:0.39
Consensus pattern (72 bp):
TCTATAGTCGACTATGGCTATGTAATCTTGACTTTTCTTGCCTTTTAACTAGTAAGAGTCAACTA
TACCTCC
Found at i:18849596 original size:20 final size:20
Alignment explanation
Indices: 18849571--18849612 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
18849561 CTTACAAACC
18849571 TCAAATCATACTCCAATAAG
1 TCAAATCATACTCCAATAAG
*
18849591 TCAAATTATACTCCAATAAG
1 TCAAATCATACTCCAATAAG
18849611 TC
1 TC
18849613 CAATGGGGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.43, C:0.24, G:0.05, T:0.29
Consensus pattern (20 bp):
TCAAATCATACTCCAATAAG
Found at i:18851459 original size:19 final size:19
Alignment explanation
Indices: 18851435--18851473 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
18851425 ACAAGTGGAA
18851435 AATTTTG-GAATAAAATAAT
1 AATTTTGAG-ATAAAATAAT
*
18851454 AATTTTTAGATAAAATAAT
1 AATTTTGAGATAAAATAAT
18851473 A
1 A
18851474 TTAAAATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 17 0.94
20 1 0.06
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (19 bp):
AATTTTGAGATAAAATAAT
Found at i:18851868 original size:22 final size:23
Alignment explanation
Indices: 18851838--18851881 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
18851828 TTATGGAAAA
*
18851838 CAAGATGAAATTCAAGTAAGATG
1 CAAGATGAAATGCAAGTAAGATG
*
18851861 CAAG-TGAAATGCAAGTGAGAT
1 CAAGATGAAATGCAAGTAAGAT
18851882 TACTTAGCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.45, C:0.09, G:0.25, T:0.20
Consensus pattern (23 bp):
CAAGATGAAATGCAAGTAAGATG
Found at i:18852616 original size:24 final size:23
Alignment explanation
Indices: 18852587--18852632 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
18852577 AGGAAGAGTT
18852587 AAGAAATA-AAGAAGAAGAGAAAGG
1 AAGAAA-AGAAGAAGAAGA-AAAGG
*
18852611 AAGAAAAGAGGAAGAAGAAAAG
1 AAGAAAAGAAGAAGAAGAAAAG
18852633 AGAAAGGAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.67, C:0.00, G:0.30, T:0.02
Consensus pattern (23 bp):
AAGAAAAGAAGAAGAAGAAAAGG
Found at i:18861591 original size:20 final size:20
Alignment explanation
Indices: 18861566--18861613 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
18861556 TATGATATGT
18861566 ATCTCACCCAACTCATGTGC
1 ATCTCACCCAACTCATGTGC
*
18861586 ATCTCACCCAACTTATGTGC
1 ATCTCACCCAACTCATGTGC
*
18861606 ATCCCACC
1 ATCTCACC
18861614 ACATCGTGCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.25, C:0.42, G:0.08, T:0.25
Consensus pattern (20 bp):
ATCTCACCCAACTCATGTGC
Found at i:18878539 original size:2 final size:2
Alignment explanation
Indices: 18878492--18878527 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
18878482 TGTCATGTTG
18878492 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
18878528 CTGAATATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:18878725 original size:37 final size:38
Alignment explanation
Indices: 18878656--18878752 Score: 115
Period size: 37 Copynumber: 2.6 Consensus size: 38
18878646 TGCCTGTGCG
* * ** *
18878656 CGATGTGGGGGATTCACACGATGGTATTAGCTAT-GCA
1 CGATGTGGGGGATGCACATGATGACATCAGCTATAGCA
*
18878693 CGATGTGGGGGATGCACATGATGACCTCAGCTATGAGCA
1 CGATGTGGGGGATGCACATGATGACATCAGCTAT-AGCA
*
18878732 CGATGTGGGGGTTGCACATGA
1 CGATGTGGGGGATGCACATGA
18878753 GATGGGTGAG
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
37 28 0.55
39 23 0.45
ACGTcount: A:0.24, C:0.18, G:0.35, T:0.24
Consensus pattern (38 bp):
CGATGTGGGGGATGCACATGATGACATCAGCTATAGCA
Found at i:18881976 original size:40 final size:40
Alignment explanation
Indices: 18881921--18882026 Score: 158
Period size: 40 Copynumber: 2.6 Consensus size: 40
18881911 GCATTAGATG
*
18881921 TGCACGATGTGGGGGGATGCACATGATGACTCCCGCTATA
1 TGCACGATGTGGGGGGATGCACATGATGACTCCAGCTATA
* * * * *
18881961 TGCACGATGTAGGGGGATACACACGATGACTCTAGCTATG
1 TGCACGATGTGGGGGGATGCACATGATGACTCCAGCTATA
18882001 TGCACGATGTGGGGGGATGCACATGA
1 TGCACGATGTGGGGGGATGCACATGA
18882027 GTTGAGGAGG
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 57 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.22
Consensus pattern (40 bp):
TGCACGATGTGGGGGGATGCACATGATGACTCCAGCTATA
Found at i:18883529 original size:20 final size:20
Alignment explanation
Indices: 18883492--18883531 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
18883482 CTATAAATAT
*
18883492 CTCATTTCTCCAGCAGCTTC
1 CTCATTTCTCCAACAGCTTC
* *
18883512 CTCATTTTTCCAATAGCTTC
1 CTCATTTCTCCAACAGCTTC
18883532 TTGTTCTTCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.17, C:0.35, G:0.07, T:0.40
Consensus pattern (20 bp):
CTCATTTCTCCAACAGCTTC
Found at i:18884306 original size:2 final size:2
Alignment explanation
Indices: 18884299--18884327 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
18884289 TGTTATGTTG
18884299 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
18884328 NNNNNNNNNN
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:18887988 original size:15 final size:16
Alignment explanation
Indices: 18887968--18888006 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
18887958 TTTCTCACTT
18887968 TTTCTTTCCCCTTT-C
1 TTTCTTTCCCCTTTCC
**
18887983 TTTCTTTCCTTTTTCC
1 TTTCTTTCCCCTTTCC
18887999 TTTCTTTC
1 TTTCTTTC
18888007 TTTCCTTTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 12 0.57
16 9 0.43
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (16 bp):
TTTCTTTCCCCTTTCC
Found at i:18888000 original size:20 final size:20
Alignment explanation
Indices: 18887971--18888024 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
18887961 CTCACTTTTT
*
18887971 CTTTCCCCTTTCTTTCTTTC
1 CTTTCTCCTTTCTTTCTTTC
*
18887991 CTTTTTCCTTTCTTTCTTTC
1 CTTTCTCCTTTCTTTCTTTC
18888011 CTTTCTCCTTTCTT
1 CTTTCTCCTTTCTT
18888025 CCAACTGATC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (20 bp):
CTTTCTCCTTTCTTTCTTTC
Found at i:18888026 original size:15 final size:15
Alignment explanation
Indices: 18887950--18888026 Score: 62
Period size: 13 Copynumber: 5.5 Consensus size: 15
18887940 AATCAAGCTT
18887950 TTTCTTCCTTTCTCAC
1 TTTCTTCCTTTCTC-C
*
18887966 TTT-TT-CTTTCCCC
1 TTTCTTCCTTTCTCC
*
18887979 TTTCTTTC-TT-TCC
1 TTTCTTCCTTTCTCC
18887992 TTT-TTCC-TT-T-C
1 TTTCTTCCTTTCTCC
18888003 TTTCTTTCCTTTCTCC
1 TTTC-TTCCTTTCTCC
18888019 TTTCTTCC
1 TTTCTTCC
18888027 AACTGATCTC
Statistics
Matches: 51, Mismatches: 3, Indels: 15
0.74 0.04 0.22
Matches are distributed among these distances:
11 4 0.08
12 6 0.12
13 13 0.25
14 12 0.24
15 8 0.16
16 8 0.16
ACGTcount: A:0.01, C:0.35, G:0.00, T:0.64
Consensus pattern (15 bp):
TTTCTTCCTTTCTCC
Found at i:18891287 original size:80 final size:80
Alignment explanation
Indices: 18891075--18891455 Score: 529
Period size: 80 Copynumber: 4.8 Consensus size: 80
18891065 ATAACATCTC
* * * *
18891075 CATAAATCA-TCATCATACTTAGCCCATAATGTATATGACTATCTCAACACATACA-CTAATGGC
1 CATAAATCACTTA-CATGCTTAGCCCATAGTGTATATGACTATCTCAACACATACATCTCATGGC
*
18891138 ATACATTTCATAGTCT
65 ATACATTTCATAGCCT
* * * *
18891154 CATAAATCATTTACATGC-TAGCCCATAGTGTATATGACTATCTCAATAGATACATCTCATGGAA
1 CATAAATCACTTACATGCTTAGCCCATAGTGTATATGACTATCTCAACACATACATCTCATGGCA
18891218 TACATTTCATAGCCT
66 TACATTTCATAGCCT
*
18891233 CATAAATCACTTACATGCTTAGCCCATAGTGTATATGACTATCTCAACATATACATCTCATGGCA
1 CATAAATCACTTACATGCTTAGCCCATAGTGTATATGACTATCTCAACACATACATCTCATGGCA
*
18891298 TACATTTCATCA-TCT
66 TACATTTCAT-AGCCT
* * * *
18891313 GATAAATCACTTACATGTTTAGCCCATAGTGTATATGACTATCTCAACATACACATCTCATGGCA
1 CATAAATCACTTACATGCTTAGCCCATAGTGTATATGACTATCTCAACACATACATCTCATGGCA
*
18891378 TACATTTCATAACCT
66 TACATTTCATAGCCT
* * *
18891393 CATAAATCACTTACATGCTTAGCCCATAGTGTACATGA-TATGTTTAACACATACATCTCATGG
1 CATAAATCACTTACATGCTTAGCCCATAGTGTATATGACTAT-CTCAACACATACATCTCATGG
18891456 TAACATGTTA
Statistics
Matches: 272, Mismatches: 24, Indels: 11
0.89 0.08 0.04
Matches are distributed among these distances:
78 33 0.12
79 55 0.20
80 183 0.67
81 1 0.00
ACGTcount: A:0.34, C:0.23, G:0.10, T:0.33
Consensus pattern (80 bp):
CATAAATCACTTACATGCTTAGCCCATAGTGTATATGACTATCTCAACACATACATCTCATGGCA
TACATTTCATAGCCT
Found at i:18892737 original size:18 final size:18
Alignment explanation
Indices: 18892714--18892754 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
18892704 TGTCCTTTTA
18892714 ACTTTTTACTCTCCATTT
1 ACTTTTTACTCTCCATTT
18892732 ACTTTTTACTCTCCATTT
1 ACTTTTTACTCTCCATTT
18892750 ACTTT
1 ACTTT
18892755 AAATATTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.17, C:0.27, G:0.00, T:0.56
Consensus pattern (18 bp):
ACTTTTTACTCTCCATTT
Found at i:18894594 original size:54 final size:54
Alignment explanation
Indices: 18894509--18894765 Score: 424
Period size: 54 Copynumber: 4.8 Consensus size: 54
18894499 TATACCACTA
* *
18894509 CATCTCATCCAGCTCATGTGCATCCCCCCACATCATGCACATAGCCGGACACCC
1 CATCTCACCCAGCTCATGTGCATCCCCCCACATCGTGCACATAGCCGGACACCC
* * *
18894563 CATCTCACCCAGCTCATGTGCATCCCTCCACATCGTGCACATAACCGGACATCC
1 CATCTCACCCAGCTCATGTGCATCCCCCCACATCGTGCACATAGCCGGACACCC
*
18894617 CATCTCACCCAGCTCGTGTGCATCCCCCCACATCGTGCACATAGCCGGACACCC
1 CATCTCACCCAGCTCATGTGCATCCCCCCACATCGTGCACATAGCCGGACACCC
* * *
18894671 CATCTCACCCAACTCATGTGCATCCCCCCACATCGTGCACATAGTCGGACACTC
1 CATCTCACCCAGCTCATGTGCATCCCCCCACATCGTGCACATAGCCGGACACCC
*
18894725 CATCTCACCCAGCTCGTGTGCATCCCCCCACATCGTGCACA
1 CATCTCACCCAGCTCATGTGCATCCCCCCACATCGTGCACA
18894766 GTTAATGCCA
Statistics
Matches: 188, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 188 1.00
ACGTcount: A:0.23, C:0.44, G:0.14, T:0.19
Consensus pattern (54 bp):
CATCTCACCCAGCTCATGTGCATCCCCCCACATCGTGCACATAGCCGGACACCC
Found at i:18894919 original size:2 final size:2
Alignment explanation
Indices: 18894907--18894946 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
18894897 ACCATTTATG
18894907 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
18894947 AACATTATAC
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:18905966 original size:22 final size:20
Alignment explanation
Indices: 18905928--18905970 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 20
18905918 ACCAGTGAAA
18905928 TTTACAAGCTTTCACCAAGC
1 TTTACAAGCTTTCACCAAGC
*
18905948 TTTACAATGACTTTTACCAAGC
1 TTTACAA-G-CTTTCACCAAGC
18905970 T
1 T
18905971 CAGCCAAAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 7 0.35
21 1 0.05
22 12 0.60
ACGTcount: A:0.30, C:0.26, G:0.09, T:0.35
Consensus pattern (20 bp):
TTTACAAGCTTTCACCAAGC
Found at i:18915661 original size:54 final size:54
Alignment explanation
Indices: 18915579--18915842 Score: 341
Period size: 54 Copynumber: 4.9 Consensus size: 54
18915569 ATACCACTAC
* *
18915579 ATCTCATCCAGCTCATGTGCATCCCCCCACATCGTGCACATAGCCGGACACCCA
1 ATCTCACCCAGCTCATGTGCATCCCCCCACATCGTGCACATAGCCAGACACCCA
** * * * *
18915633 ATCTCACTTAGCTTATGTGCATCCCCCCACATCGTGCACATAGTCATACACTCA
1 ATCTCACCCAGCTCATGTGCATCCCCCCACATCGTGCACATAGCCAGACACCCA
* *
18915687 ATCTCACTCAGCTCATGTGCATCCCCCCACATTGTGCACATAGCCAGACATCCC-
1 ATCTCACCCAGCTCATGTGCATCCCCCCACATCGTGCACATAGCCAGACA-CCCA
* * * * ** *
18915741 ATCTCACCCAGCTCGTGTGCATCTCCCCACATCATGCACATAACTGGACACCCC
1 ATCTCACCCAGCTCATGTGCATCCCCCCACATCGTGCACATAGCCAGACACCCA
**
18915795 ATCTCACCCAGCTTGTGTGCATCCCCCCACATCGTGCACATAGCCAGA
1 ATCTCACCCAGCTCATGTGCATCCCCCCACATCGTGCACATAGCCAGA
18915843 GTCATCGTGT
Statistics
Matches: 180, Mismatches: 28, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
53 3 0.02
54 175 0.97
55 2 0.01
ACGTcount: A:0.24, C:0.40, G:0.14, T:0.22
Consensus pattern (54 bp):
ATCTCACCCAGCTCATGTGCATCCCCCCACATCGTGCACATAGCCAGACACCCA
Found at i:18916029 original size:2 final size:2
Alignment explanation
Indices: 18916022--18916058 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
18916012 TATGACATAG
18916022 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
18916059 CAACATTATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:18920224 original size:2 final size:2
Alignment explanation
Indices: 18920217--18920243 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
18920207 TATCTATAGC
18920217 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
18920244 CAAGCATGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:18921247 original size:19 final size:19
Alignment explanation
Indices: 18921223--18921259 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
18921213 CAAGAAGAGA
18921223 AAGGAAATGAAAA-GAAAAC
1 AAGGAAA-GAAAATGAAAAC
18921242 AAGGAAAGAAAATGAAAA
1 AAGGAAAGAAAATGAAAA
18921260 AAAATTAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.70, C:0.03, G:0.22, T:0.05
Consensus pattern (19 bp):
AAGGAAAGAAAATGAAAAC
Found at i:18922101 original size:2 final size:2
Alignment explanation
Indices: 18922094--18922136 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
18922084 AATCACATAA
18922094 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
18922136 A
1 A
18922137 NNNNNNNNNN
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:18941982 original size:72 final size:72
Alignment explanation
Indices: 18941893--18942075 Score: 228
Period size: 72 Copynumber: 2.6 Consensus size: 72
18941883 GCAAAACTTG
*
18941893 AAGATTACACAACCATAGTCGACTATAGAGGAAGCATAGTTG-ACTCTTACAAGTCAAAAAG-TA
1 AAGATTACACAACCATAGTCGACTATAGAGGAAGCATAGTTGAAC-CTTACAAGTC-AAAAGCCA
**
18941956 GGAAAAGTC
64 AAAAAAGTC
* * * * * *
18941965 AAGATTATACAATCATAGTTGACTATAAAGGAGGCATAGTTGAACCTTACAAGTCAAAGGCCAAA
1 AAGATTACACAACCATAGTCGACTATAGAGGAAGCATAGTTGAACCTTACAAGTCAAAAGCCAAA
18942030 AAAAGTC
66 AAAAGTC
* *
18942037 AAGATTACATAACCATAGTCAACTATAGA-GAAGCATAGT
1 AAGATTACACAACCATAGTCGACTATAGAGGAAGCATAGT
18942076 CAACTATAAT
Statistics
Matches: 93, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
71 13 0.14
72 78 0.84
73 2 0.02
ACGTcount: A:0.44, C:0.16, G:0.18, T:0.22
Consensus pattern (72 bp):
AAGATTACACAACCATAGTCGACTATAGAGGAAGCATAGTTGAACCTTACAAGTCAAAAGCCAAA
AAAAGTC
Found at i:18944203 original size:17 final size:17
Alignment explanation
Indices: 18944181--18944213 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
18944171 AAATAAGGAT
18944181 TGCTCCCCCTAAGTATA
1 TGCTCCCCCTAAGTATA
18944198 TGCTCCCCCTAAGTAT
1 TGCTCCCCCTAAGTAT
18944214 GTGCATATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.21, C:0.36, G:0.12, T:0.30
Consensus pattern (17 bp):
TGCTCCCCCTAAGTATA
Found at i:18976387 original size:16 final size:17
Alignment explanation
Indices: 18976368--18976408 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
18976358 AAAAACATAG
18976368 ATAAATAATTAAA-AAC-
1 ATAAATAA-TAAATAACA
18976384 ATAAATAA-AAATAACA
1 ATAAATAATAAATAACA
18976400 ATAAATAAT
1 ATAAATAAT
18976409 CTTTGAGTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 3 0.14
15 3 0.14
16 16 0.73
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (17 bp):
ATAAATAATAAATAACA
Found at i:18977750 original size:24 final size:24
Alignment explanation
Indices: 18977721--18977785 Score: 94
Period size: 25 Copynumber: 2.7 Consensus size: 24
18977711 TGCAACAAGA
*
18977721 CAAGAATCCAAGGAAACTGCACCC
1 CAAGAATCTAAGGAAACTGCACCC
* *
18977745 TAAGAATAATAAGGAAACTGCACCC
1 CAAGAAT-CTAAGGAAACTGCACCC
18977770 CAAGAATCTAAGGAAA
1 CAAGAATCTAAGGAAA
18977786 ATTAAATTAG
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
24 14 0.40
25 21 0.60
ACGTcount: A:0.48, C:0.23, G:0.17, T:0.12
Consensus pattern (24 bp):
CAAGAATCTAAGGAAACTGCACCC
Found at i:18984311 original size:4 final size:4
Alignment explanation
Indices: 18984302--18984436 Score: 90
Period size: 4 Copynumber: 33.8 Consensus size: 4
18984292 GTTTTTCATT
* * * * * *
18984302 TATA TATA TATA TACA TATA TATG TATA CATA CATA TATA TGTA TACA
1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA
* * * * ** * * **
18984350 TACA TAAA TATA TGTA TATA TACA TGCA TATA TGTA TATA TACA TGCA
1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA
* * * *
18984398 TATA TGTA TGTA TATA TATA TATA TATA TGTA TGTA TAT
1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TAT
18984437 GGATTCATGT
Statistics
Matches: 104, Mismatches: 27, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
4 104 1.00
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
Consensus pattern (4 bp):
TATA
Found at i:18984436 original size:18 final size:18
Alignment explanation
Indices: 18984302--18984426 Score: 142
Period size: 20 Copynumber: 6.6 Consensus size: 18
18984292 GTTTTTCATT
*
18984302 TATATATATATATACATA
1 TATATGTATATATACATA
*
18984320 TATATGTATACATACATA
1 TATATGTATATATACATA
*
18984338 TATATGTATACATACATAAA
1 TATATGTATATATACAT--A
18984358 TATATGTATATATACATGCA
1 TATATGTATATATACAT--A
18984378 TATATGTATATATACATGCA
1 TATATGTATATATACAT--A
* *
18984398 TATATGTATGTATATATA
1 TATATGTATATATACATA
*
18984416 TATATATATAT
1 TATATGTATAT
18984427 GTATGTATAT
Statistics
Matches: 96, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
18 43 0.45
20 53 0.55
ACGTcount: A:0.44, C:0.07, G:0.06, T:0.42
Consensus pattern (18 bp):
TATATGTATATATACATA
Found at i:18984437 original size:10 final size:10
Alignment explanation
Indices: 18984306--18984437 Score: 79
Period size: 10 Copynumber: 13.0 Consensus size: 10
18984296 TTCATTTATA
*
18984306 TATATATATA
1 TATATATATG
*
18984316 CATATATATG
1 TATATATATG
*
18984326 TATACATA--
1 TATATATATG
*
18984334 CATATATATG
1 TATATATATG
* **
18984344 TATACATACA
1 TATATATATG
*
18984354 TAAATATATG
1 TATATATATG
18984364 TATATATACATG
1 TATATAT--ATG
* * *
18984376 CATATATGTA
1 TATATATATG
*
18984386 TATATACATG
1 TATATATATG
*
18984396 CATATATGTATG
1 --TATATATATG
*
18984408 TATATATATA
1 TATATATATG
18984418 TATATATATG
1 TATATATATG
*
18984428 TATGTATATG
1 TATATATATG
18984438 GATTCATGTT
Statistics
Matches: 88, Mismatches: 28, Indels: 12
0.69 0.22 0.09
Matches are distributed among these distances:
8 6 0.07
10 65 0.74
12 17 0.19
ACGTcount: A:0.42, C:0.07, G:0.08, T:0.42
Consensus pattern (10 bp):
TATATATATG
Found at i:18986950 original size:15 final size:15
Alignment explanation
Indices: 18986930--18986960 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
18986920 TCATTTTGCA
18986930 CTCTGTCCCAAACTT
1 CTCTGTCCCAAACTT
*
18986945 CTCTGTCCGAAACTT
1 CTCTGTCCCAAACTT
18986960 C
1 C
18986961 AATGGTCACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.39, G:0.10, T:0.32
Consensus pattern (15 bp):
CTCTGTCCCAAACTT
Found at i:18991938 original size:42 final size:42
Alignment explanation
Indices: 18991868--18991967 Score: 146
Period size: 42 Copynumber: 2.4 Consensus size: 42
18991858 ACGGCTTATG
* * *
18991868 CGCATATAGTCGGGTCAGCAATGACTTATGTGCACTCCTATT
1 CGCACATAGTCGGGTCAGCAACGACTTATGTGCACTCCTACT
* * *
18991910 CGCACATAGCCGGGTCAGCAACGGCTTATGTGCACTCTTACT
1 CGCACATAGTCGGGTCAGCAACGACTTATGTGCACTCCTACT
18991952 CGCACATAGTCGGGTC
1 CGCACATAGTCGGGTC
18991968 CAAATCAACA
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 51 1.00
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.26
Consensus pattern (42 bp):
CGCACATAGTCGGGTCAGCAACGACTTATGTGCACTCCTACT
Found at i:18997007 original size:26 final size:26
Alignment explanation
Indices: 18996947--18997008 Score: 106
Period size: 26 Copynumber: 2.4 Consensus size: 26
18996937 ACCATATACC
*
18996947 CATCATCAACATGCACACCATCCCAT
1 CATCATCATCATGCACACCATCCCAT
*
18996973 CATCATCATCATGCACATCATCCCAT
1 CATCATCATCATGCACACCATCCCAT
18996999 CATCATCATC
1 CATCATCATC
18997009 TCATATGCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.32, C:0.40, G:0.03, T:0.24
Consensus pattern (26 bp):
CATCATCATCATGCACACCATCCCAT
Found at i:18997301 original size:42 final size:42
Alignment explanation
Indices: 18997243--18997366 Score: 212
Period size: 42 Copynumber: 3.0 Consensus size: 42
18997233 ATGGGGGCAA
* *
18997243 CAACGGCTTATGTGCACTCCCACTCACACATAGCCGGGTCAG
1 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTCAG
* *
18997285 CAACGGCTTATATGCACTCCTACTCGCACATAGTCGGGTCAG
1 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTCAG
18997327 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTC
1 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTC
18997367 CATATCAACA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 76 1.00
ACGTcount: A:0.23, C:0.34, G:0.22, T:0.22
Consensus pattern (42 bp):
CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTCAG
Found at i:19001743 original size:73 final size:73
Alignment explanation
Indices: 19001628--19001793 Score: 185
Period size: 73 Copynumber: 2.3 Consensus size: 73
19001618 CTAATTACGC
* ** * *
19001628 TCTTAGTCGACTAAGTCGTTTCTGTCTTCTGATCTTAGTTTCTAACAGT-GAGCACTTAGTCGAC
1 TCTTAGTCGACTAAGTTGTTTCTGTCTTCAAAGCCTAGTTTCTAACAGTAG-GCACTTAGTCGAC
19001692 TAACTTACT
65 TAACTTACT
* *** *
19001701 TCTTAGTCGATTAAGTTGTTTCTGTCTT-AAAGCCTAGATTTCTGGTAGTAGGCTCTTAGTCGAC
1 TCTTAGTCGACTAAGTTGTTTCTGTCTTCAAAGCCTAG-TTTCTAACAGTAGGCACTTAGTCGAC
*
19001765 TAACTTGCT
65 TAACTTACT
*
19001774 TCTTGGTCGACTAAG-TGTTT
1 TCTTAGTCGACTAAGTTGTTT
19001794 TTCGTCTCTC
Statistics
Matches: 78, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
72 10 0.13
73 67 0.86
74 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.19, T:0.41
Consensus pattern (73 bp):
TCTTAGTCGACTAAGTTGTTTCTGTCTTCAAAGCCTAGTTTCTAACAGTAGGCACTTAGTCGACT
AACTTACT
Found at i:19002164 original size:17 final size:17
Alignment explanation
Indices: 19002142--19002176 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
19002132 GGAGGTTTTC
19002142 CTCCCCCTAAGAGTGTG
1 CTCCCCCTAAGAGTGTG
* *
19002159 CTCCCCCTTAGTGTGTG
1 CTCCCCCTAAGAGTGTG
19002176 C
1 C
19002177 ATATTTTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.11, C:0.37, G:0.23, T:0.29
Consensus pattern (17 bp):
CTCCCCCTAAGAGTGTG
Found at i:19010763 original size:20 final size:19
Alignment explanation
Indices: 19010738--19010778 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
19010728 CAGTAAGCAC
19010738 TTAGTCGACTAACTTACTTT
1 TTAGTCGACTAACTTA-TTT
* *
19010758 TTAGTCGATTAAGTTATTT
1 TTAGTCGACTAACTTATTT
19010777 TT
1 TT
19010779 GTCTTGAAGC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.51
Consensus pattern (19 bp):
TTAGTCGACTAACTTATTT
Found at i:19015824 original size:28 final size:28
Alignment explanation
Indices: 19015628--19015828 Score: 210
Period size: 29 Copynumber: 7.0 Consensus size: 28
19015618 AAATATTTTA
*
19015628 TCTTGTCTAAATTGAA-ACAAATATGTTT
1 TCTTGTCTAAATT-AAGACAAACATGTTT
* * * *
19015656 TCTTGTCTAGATTAAGATAAAAAATATTTT
1 TCTTGTCTAAATTAAGA-CAAACAT-GTTT
* *
19015686 TCTTGTCTTAAATGAAGACAAACATATTT
1 TCTTGTC-TAAATTAAGACAAACATGTTT
*
19015715 TCTTGTCTAAATGAAGACTAAACATGATTT
1 TCTTGTCTAAATTAAGAC-AAACATG-TTT
*
19015745 T-TTGTCTAAATGAAGACTAAACATGATTT
1 TCTTGTCTAAATTAAGAC-AAACATG-TTT
*
19015774 T-TTATCTAAATTAAGACAAAACATGTTT
1 TCTTGTCTAAATTAAGAC-AAACATGTTT
19015802 TCTTGTCTAAATTAAGACAAACATGTT
1 TCTTGTCTAAATTAAGACAAACATGTT
19015829 AAAGCTGTCA
Statistics
Matches: 152, Mismatches: 14, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
27 2 0.01
28 37 0.24
29 86 0.57
30 19 0.12
31 8 0.05
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.39
Consensus pattern (28 bp):
TCTTGTCTAAATTAAGACAAACATGTTT
Found at i:19030042 original size:128 final size:129
Alignment explanation
Indices: 19029890--19030238 Score: 389
Period size: 128 Copynumber: 2.7 Consensus size: 129
19029880 GTCTTCTCAG
* * * * ** *
19029890 TAACAAGACACGTACTGGGCCGTAGCCGCTGACTGTAAACAAGACACAAGATTTGGCACTCTTGT
1 TAACAAGACACATACGGGGTCGTAGCCGCTAACTGTAAACAAGACATGAGATTTGGCACTCATGT
* ***
19029955 CCACATAACATCATCCAAGATACATCCATCGAATGGCATCAAGTCATAAT-TGAGTCCTTATGT
66 CCACATAACATCATCCAAGATACATCCATCGAATGGCATCAAGTCATAATATGAGTCCTCACAA
* * * *
19030018 TAACAAGACACATACGGGGTCGTAGCTGCTAAC-GATAAAAAAGGCATGAGATTTAGCACTCATG
1 TAACAAGACACATACGGGGTCGTAGCCGCTAACTG-TAAACAAGACATGAGATTTGGCACTCATG
* * * * * *
19030082 TCCACATAACATCATCTAGGATACATTCATCGTATTGCATCAAGTCATAATCAATGAGTCCTCCC
65 TCCACATAACATCATCCAAGATACATCCATCGAATGGCATCAAGTCATAAT--ATGAGTCCTCAC
19030147 AA
128 AA
** * * * *
19030149 TAACAAGACACATACGGGGTCGTAATCGCCAA-TGGTAAACAATACATGAGATATGGCACTCCTG
1 TAACAAGACACATACGGGGTCGTAGCCGCTAACT-GTAAACAAGACATGAGATTTGGCACTCATG
*
19030213 TCCACATAAAATCATCCAAGATACAT
65 TCCACATAACATCATCCAAGATACAT
19030239 TCATTAAACA
Statistics
Matches: 181, Mismatches: 34, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
127 1 0.01
128 97 0.54
131 82 0.45
132 1 0.01
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.23
Consensus pattern (129 bp):
TAACAAGACACATACGGGGTCGTAGCCGCTAACTGTAAACAAGACATGAGATTTGGCACTCATGT
CCACATAACATCATCCAAGATACATCCATCGAATGGCATCAAGTCATAATATGAGTCCTCACAA
Found at i:19036772 original size:23 final size:24
Alignment explanation
Indices: 19036745--19036791 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 24
19036735 TTTTAACGTC
19036745 TTTTA-AACATTTTTATTT-TTTAA
1 TTTTAGAA-ATTTTTATTTATTTAA
19036768 TTTTAGAAATTTTTATTTATTTAA
1 TTTTAGAAATTTTTATTTATTTAA
19036792 AATACAATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 15 0.68
24 7 0.32
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (24 bp):
TTTTAGAAATTTTTATTTATTTAA
Found at i:19037671 original size:13 final size:13
Alignment explanation
Indices: 19037655--19037686 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
19037645 CTCTTTTCAA
*
19037655 TTTCTCCTTTTTG
1 TTTCTCCTTGTTG
19037668 TTTCTCCTTGTTG
1 TTTCTCCTTGTTG
19037681 TTTCTC
1 TTTCTC
19037687 TTTCTCTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.00, C:0.25, G:0.09, T:0.66
Consensus pattern (13 bp):
TTTCTCCTTGTTG
Found at i:19037687 original size:45 final size:46
Alignment explanation
Indices: 19037636--19037727 Score: 159
Period size: 45 Copynumber: 2.0 Consensus size: 46
19037626 TAAACCCTAT
* *
19037636 TTTCTCTTTCTCTTTTCAATTTCTCCTTTTTGTTTCTC-CTTGTTG
1 TTTCTCTTTCTCTTTTCAATTTCTCCCTTTTGTTTCTCTCTAGTTG
19037681 TTTCTCTTTCTCTTTTCAATTTCTCCCTTTTGTTTCTCTCTAGTTG
1 TTTCTCTTTCTCTTTTCAATTTCTCCCTTTTGTTTCTCTCTAGTTG
19037727 T
1 T
19037728 AGCTCTCTTC
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
45 37 0.84
46 7 0.16
ACGTcount: A:0.05, C:0.25, G:0.07, T:0.63
Consensus pattern (46 bp):
TTTCTCTTTCTCTTTTCAATTTCTCCCTTTTGTTTCTCTCTAGTTG
Found at i:19038308 original size:28 final size:29
Alignment explanation
Indices: 19038267--19038326 Score: 68
Period size: 30 Copynumber: 2.1 Consensus size: 29
19038257 GTCTATGGGC
*
19038267 AATTTTTCAATTTT-TGGGGCAAAAATGT
1 AATTTTTCAATTTTAGGGGGCAAAAATGT
* * *
19038295 AATTTTTGACTTTTACGGGGGCAAAAGTGT
1 AATTTTTCAATTTTA-GGGGGCAAAAATGT
19038325 AA
1 AA
19038327 ATTTCAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 12 0.46
30 14 0.54
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.38
Consensus pattern (29 bp):
AATTTTTCAATTTTAGGGGGCAAAAATGT
Found at i:19042763 original size:36 final size:36
Alignment explanation
Indices: 19042697--19042765 Score: 95
Period size: 36 Copynumber: 1.9 Consensus size: 36
19042687 CCCTTTGTGG
* *
19042697 ATTGTAAAGGTTATCATTTAATCCCATGAAAAAGCT
1 ATTGTAAAGGTTATCACTTAATCCAATGAAAAAGCT
*
19042733 ATTGTAAGGGTTATCACTTAA-CCAACTGAAAAA
1 ATTGTAAAGGTTATCACTTAATCCAA-TGAAAAA
19042766 TCAAGAATCC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
35 3 0.10
36 26 0.90
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.30
Consensus pattern (36 bp):
ATTGTAAAGGTTATCACTTAATCCAATGAAAAAGCT
Found at i:19049279 original size:59 final size:59
Alignment explanation
Indices: 19049186--19049336 Score: 173
Period size: 59 Copynumber: 2.6 Consensus size: 59
19049176 TAAGGTAAAG
* * * * * *
19049186 ATATTTTATCTTGTCTAC-ATTCAGACAAATATATTTTCTAATCTAGATTAAGAGAAAAA
1 ATATTTT-TCTTGTCTTCAATTAAGACAAACATATTTTCTAATCTAAATTAAAACAAAAA
* * *
19049245 ATATTTTTCTTGTCTTCAATTAAGACAAACATATTTTCTTATCTAAATTAAAACCAAAC
1 ATATTTTTCTTGTCTTCAATTAAGACAAACATATTTTCTAATCTAAATTAAAACAAAAA
* *
19049304 ATGTTTTT-TTGTC-TAAATTAAGACAAACATATT
1 ATATTTTTCTTGTCTTCAATTAAGACAAACATATT
19049337 AAAGCTACCA
Statistics
Matches: 80, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
57 19 0.24
58 14 0.17
59 47 0.59
ACGTcount: A:0.39, C:0.13, G:0.07, T:0.41
Consensus pattern (59 bp):
ATATTTTTCTTGTCTTCAATTAAGACAAACATATTTTCTAATCTAAATTAAAACAAAAA
Found at i:19049284 original size:29 final size:28
Alignment explanation
Indices: 19049194--19049336 Score: 133
Period size: 29 Copynumber: 5.0 Consensus size: 28
19049184 AGATATTTTA
* * *
19049194 TCTTGTCTACATTCAGACAAATATATTT
1 TCTTGTCTAAATTAAGACAAACATATTT
** * * *
19049222 TCTAATCTAGATTAAGAGAAAAAATATTTT
1 TCTTGTCTAAATTAAGA-CAAACATA-TTT
*
19049252 TCTTGTCTTCAATTAAGACAAACATATTT
1 TCTTGTC-TAAATTAAGACAAACATATTT
* * *
19049281 TCTTATCTAAATTAAAACCAAACATGTTT
1 TCTTGTCTAAATTAAGA-CAAACATATTT
*
19049310 TTTTGTCTAAATTAAGACAAACATATT
1 TCTTGTCTAAATTAAGACAAACATATT
19049337 AAAGCTACCA
Statistics
Matches: 91, Mismatches: 20, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
28 30 0.33
29 39 0.43
30 14 0.15
31 8 0.09
ACGTcount: A:0.39, C:0.14, G:0.07, T:0.40
Consensus pattern (28 bp):
TCTTGTCTAAATTAAGACAAACATATTT
Found at i:19050544 original size:24 final size:24
Alignment explanation
Indices: 19050512--19050561 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
19050502 TTATGATCAC
*
19050512 TGGATGATCTGATTGGTACAGGAT
1 TGGATGATCTGATTAGTACAGGAT
19050536 TGGATGATCTGATTAGTACAGGAT
1 TGGATGATCTGATTAGTACAGGAT
19050560 TG
1 TG
19050562 AGTGTTAATC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.26, C:0.08, G:0.32, T:0.34
Consensus pattern (24 bp):
TGGATGATCTGATTAGTACAGGAT
Found at i:19055254 original size:20 final size:20
Alignment explanation
Indices: 19055229--19055269 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
19055219 CAGTCACAGG
19055229 TTCAGATGCCATTTTTTCCT
1 TTCAGATGCCATTTTTTCCT
19055249 TTCAGATGCCATTTTTTCCT
1 TTCAGATGCCATTTTTTCCT
19055269 T
1 T
19055270 CTCTTTTAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.15, C:0.24, G:0.10, T:0.51
Consensus pattern (20 bp):
TTCAGATGCCATTTTTTCCT
Found at i:19067178 original size:44 final size:41
Alignment explanation
Indices: 19067115--19067197 Score: 123
Period size: 44 Copynumber: 2.0 Consensus size: 41
19067105 AACTACATTA
19067115 CTTATATATATATATATATATATTAG-TTGTATTACTAGAATCG
1 CTTATATATATATATATATATA-TAGTTTG-ATTACT-GAATCG
19067158 NCTTATATATATATATATATATATAGTTTGATTACTGAAT
1 -CTTATATATATATATATATATATAGTTTGATTACTGAAT
19067198 GCCATTGTGG
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
42 4 0.11
43 9 0.24
44 25 0.66
ACGTcount: A:0.37, C:0.06, G:0.08, T:0.47
Consensus pattern (41 bp):
CTTATATATATATATATATATATAGTTTGATTACTGAATCG
Found at i:19076438 original size:2 final size:2
Alignment explanation
Indices: 19076426--19076531 Score: 117
Period size: 2 Copynumber: 52.5 Consensus size: 2
19076416 AAAGTAAACC
*
19076426 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * * *
19076468 AT A- AT AGN AG AC AGC CT A- AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT A-T AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT
19076510 AT AT AT AT AT AT AT AT AGT AT A
1 AT AT AT AT AT AT AT AT A-T AT A
19076532 GAAATTTTGA
Statistics
Matches: 91, Mismatches: 8, Indels: 10
0.83 0.07 0.09
Matches are distributed among these distances:
1 2 0.02
2 85 0.93
3 4 0.04
ACGTcount: A:0.48, C:0.03, G:0.05, T:0.43
Consensus pattern (2 bp):
AT
Found at i:19077312 original size:4 final size:4
Alignment explanation
Indices: 19077298--19077364 Score: 50
Period size: 4 Copynumber: 16.5 Consensus size: 4
19077288 TTTTTCTCTT
* * *
19077298 TTTC ATTC TTTC TTTC TTTC TTTTC TTT- TCTC TTT- TCTTC TTTA TTTCC
1 TTTC TTTC TTTC TTTC TTTC -TTTC TTTC TTTC TTTC T-TTC TTTC TTT-C
19077347 TTTCC TTTC TTT- TTTC TT
1 TTT-C TTTC TTTC TTTC TT
19077365 CTTGGCAATC
Statistics
Matches: 51, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
3 6 0.12
4 32 0.63
5 13 0.25
ACGTcount: A:0.03, C:0.24, G:0.00, T:0.73
Consensus pattern (4 bp):
TTTC
Found at i:19077350 original size:28 final size:28
Alignment explanation
Indices: 19077307--19077367 Score: 86
Period size: 28 Copynumber: 2.2 Consensus size: 28
19077297 TTTTCATTCT
* * *
19077307 TTCTTTCTTTCTTTTCTTTTCTCTTTTC
1 TTCTTTATTTCCTTTCCTTTCTCTTTTC
*
19077335 TTCTTTATTTCCTTTCCTTTCTTTTTTC
1 TTCTTTATTTCCTTTCCTTTCTCTTTTC
19077363 TTCTT
1 TTCTT
19077368 GGCAATCGGC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.02, C:0.25, G:0.00, T:0.74
Consensus pattern (28 bp):
TTCTTTATTTCCTTTCCTTTCTCTTTTC
Found at i:19077350 original size:33 final size:33
Alignment explanation
Indices: 19077289--19077364 Score: 100
Period size: 33 Copynumber: 2.3 Consensus size: 33
19077279 TTTCCCTCCT
* *
19077289 TTTTCTCTTTTTCATTCTTTCTTTCTTTCTTTTC
1 TTTTCTC-TTTTCATTCTTTATTTCTTTCCTTTC
19077323 TTTTCTCTTTTC-TTCTTTATTTCCTTTCCTTTC
1 TTTTCTCTTTTCATTCTTTATTT-CTTTCCTTTC
*
19077356 TTTTTTCTT
1 TTTTCTCTT
19077365 CTTGGCAATC
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
32 9 0.24
33 22 0.58
34 7 0.18
ACGTcount: A:0.03, C:0.24, G:0.00, T:0.74
Consensus pattern (33 bp):
TTTTCTCTTTTCATTCTTTATTTCTTTCCTTTC
Found at i:19086707 original size:36 final size:36
Alignment explanation
Indices: 19086605--19086746 Score: 107
Period size: 36 Copynumber: 3.9 Consensus size: 36
19086595 AAAGATTCTT
* * *
19086605 GCTTTGTT-ACAAAATCAAGTGATAACCCTTACAATGA
1 GCTTT-TTAACAAGATCAAGTGATAA-CCTTACACTCA
* * *
19086642 -CTTTTTCATC-GGATCAAG-GATAACCCTTACACT-T
1 GCTTTTT-AACAAGATCAAGTGATAA-CCTTACACTCA
* *
19086676 GCTTTTTAGCAAGATTAAGTGATAAGCCTTACA-TCA
1 GCTTTTTAACAAGATCAAGTGATAA-CCTTACACTCA
*
19086712 GCTTTTTAACAAGATCAAGTTATAACCTCTACACT
1 GCTTTTTAACAAGATCAAGTGATAACCT-TACACT
19086747 AACTTTTCAA
Statistics
Matches: 84, Mismatches: 13, Indels: 16
0.74 0.12 0.14
Matches are distributed among these distances:
34 2 0.02
35 32 0.38
36 48 0.57
37 2 0.02
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33
Consensus pattern (36 bp):
GCTTTTTAACAAGATCAAGTGATAACCTTACACTCA
Found at i:19092347 original size:18 final size:19
Alignment explanation
Indices: 19092319--19092366 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
19092309 GTTACGAGTG
* *
19092319 AAAAGAATATTTTA-GAAT
1 AAAATAATATTTTATAAAT
*
19092337 AAAATATTATTTTATAAAT
1 AAAATAATATTTTATAAAT
19092356 AAAATAATATT
1 AAAATAATATT
19092367 AAAATATTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 12 0.48
19 13 0.52
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (19 bp):
AAAATAATATTTTATAAAT
Found at i:19093243 original size:16 final size:16
Alignment explanation
Indices: 19093224--19093257 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
19093214 GAAGGGAGAG
19093224 AAGAAAAAGAAAAAGA
1 AAGAAAAAGAAAAAGA
*
19093240 AAGAAAAAGAAGAAGA
1 AAGAAAAAGAAAAAGA
19093256 AA
1 AA
19093258 AGGAAGGTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (16 bp):
AAGAAAAAGAAAAAGA
Found at i:19098511 original size:3 final size:3
Alignment explanation
Indices: 19098503--19098527 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
19098493 GGGGAGGTTA
19098503 TGG TGG TGG TGG TGG TGG TGG TGG T
1 TGG TGG TGG TGG TGG TGG TGG TGG T
19098528 CGGGGTCGTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.64, T:0.36
Consensus pattern (3 bp):
TGG
Found at i:19107207 original size:2 final size:2
Alignment explanation
Indices: 19107200--19107243 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
19107190 CTCCTTCACA
19107200 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
19107242 AT
1 AT
19107244 GACCATGGTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:19112368 original size:3 final size:3
Alignment explanation
Indices: 19112360--19112393 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
19112350 TTAATCCTAG
19112360 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
19112394 AGGTAGAGGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:19118576 original size:8 final size:8
Alignment explanation
Indices: 19118563--19118597 Score: 52
Period size: 8 Copynumber: 4.2 Consensus size: 8
19118553 TACATTACTT
19118563 AAATAATA
1 AAATAATA
19118571 AAATAATA
1 AAATAATA
19118579 ATAATAATA
1 A-AATAATA
*
19118588 AAAAAATA
1 AAATAATA
19118596 AA
1 AA
19118598 TATATGAACA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
8 17 0.68
9 8 0.32
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (8 bp):
AAATAATA
Found at i:19118586 original size:17 final size:17
Alignment explanation
Indices: 19118564--19118596 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
19118554 ACATTACTTA
*
19118564 AATAATAAAATAATAAT
1 AATAATAAAAAAATAAT
19118581 AATAATAAAAAAATAA
1 AATAATAAAAAAATAA
19118597 ATATATGAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (17 bp):
AATAATAAAAAAATAAT
Found at i:19134655 original size:10 final size:10
Alignment explanation
Indices: 19134642--19134667 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
19134632 AAAATAAATA
19134642 AAAAATTATG
1 AAAAATTATG
19134652 AAAAATTATG
1 AAAAATTATG
19134662 AAAAAT
1 AAAAAT
19134668 AACTTAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.65, C:0.00, G:0.08, T:0.27
Consensus pattern (10 bp):
AAAAATTATG
Found at i:19135999 original size:21 final size:21
Alignment explanation
Indices: 19135975--19136035 Score: 113
Period size: 21 Copynumber: 2.9 Consensus size: 21
19135965 ATTGATGCCA
*
19135975 CTTGACTTTGAATGATGGCTG
1 CTTGGCTTTGAATGATGGCTG
19135996 CTTGGCTTTGAATGATGGCTG
1 CTTGGCTTTGAATGATGGCTG
19136017 CTTGGCTTTGAATGATGGC
1 CTTGGCTTTGAATGATGGC
19136036 ATCATTCTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
21 39 1.00
ACGTcount: A:0.16, C:0.15, G:0.31, T:0.38
Consensus pattern (21 bp):
CTTGGCTTTGAATGATGGCTG
Found at i:19141356 original size:169 final size:168
Alignment explanation
Indices: 19140836--19141449 Score: 722
Period size: 169 Copynumber: 3.7 Consensus size: 168
19140826 TGGCTTATTT
* * * * * * * *
19140836 TTAGGAATTTAATTCCAATAAAATTTATCTTGGTAGCTAACTCATCGAACAATTTCAGAACATTT
1 TTAGGAATTAAATTCCAATAAAATTTATCCTGATAGCTAACTCATGGAACAATTCCAAAATAATT
* * * * * * * *
19140901 TTTTAGGACTTTAGGAGGTGATTTGACTATCCAAAAAAATTC-AAAATTCATAACCCATATTTGC
66 TTTCAGGATTTTAGGAGGTGATTTGACCATTC-AAAAAATTCAAAAACTCGTAA-CCATATCTAC
* * * * * *
19140965 AAGTGGCAGTATTGGTTTTTAAATCCTTTGGTGCCTTAAAA
129 AGGTGGTAG-AATGGTTTTTAAATTCTTTGGTGGCATAAAA
* * * *
19141006 TTAGGAATTAAATTCCAATAAAATTAATCCTGATAGGTAACTCATGG-A-AATTCCAGAATAATC
1 TTAGGAATTAAATTCCAATAAAATTTATCCTGATAGCTAACTCATGGAACAATTCCAAAATAATT
* *
19141069 TTTCAAGATTTTAGAAGGTGATTTGACCATTCAAAAAATTCAAAAA-TCGT-A--ATATCTACAG
66 TTTCAGGATTTTAGGAGGTGATTTGACCATTCAAAAAATTCAAAAACTCGTAACCATATCTACAG
* *
19141130 GTGGTAGAATCGGTTTTTAACTTCTTTGGTGGCCTAAAA
131 GTGGTAGAAT-GGTTTTTAAATTCTTTGGTGGCATAAAA
*
19141169 TTAGGAATTAAATTCCAATAAAATTTATCCTGATAGCTAACACATGGAACAATTCCAAAATAATT
1 TTAGGAATTAAATTCCAATAAAATTTATCCTGATAGCTAACTCATGGAACAATTCCAAAATAATT
*
19141234 TTTCAGGATTTTAGGAGGTGATTTGGCCATTCAAAAAATTCAAAAACT-GTAACCTATATCTACA
66 TTTCAGGATTTTAGGAGGTGATTTGACCATTCAAAAAATTCAAAAACTCGTAACC-ATATCTACA
* * *
19141298 GGTGATGGAACTGGTTTTTAAATTCTTCGGTGGCATAAAA
130 GGTGGTAGAA-TGGTTTTTAAATTCTTTGGTGGCATAAAA
* * * *
19141338 TTAGGAATTAAATTCCAATAAAATTTGTGCTAATAGCTAACTCATGGAACAATTCTAAAATAATT
1 TTAGGAATTAAATTCCAATAAAATTTATCCTGATAGCTAACTCATGGAACAATTCCAAAATAATT
* * * * *
19141403 TTTTAGGATTTGAAGAGGTGTTTTGGCCATTCAAAAAATTCAAAAAC
66 TTTCAGGATTTTAGGAGGTGATTTGACCATTCAAAAAATTCAAAAAC
19141450 CATGACCTAG
Statistics
Matches: 386, Mismatches: 48, Indels: 21
0.85 0.11 0.05
Matches are distributed among these distances:
162 2 0.01
163 81 0.21
164 1 0.00
165 58 0.15
166 3 0.01
167 12 0.03
168 41 0.11
169 146 0.38
170 42 0.11
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (168 bp):
TTAGGAATTAAATTCCAATAAAATTTATCCTGATAGCTAACTCATGGAACAATTCCAAAATAATT
TTTCAGGATTTTAGGAGGTGATTTGACCATTCAAAAAATTCAAAAACTCGTAACCATATCTACAG
GTGGTAGAATGGTTTTTAAATTCTTTGGTGGCATAAAA
Found at i:19144479 original size:20 final size:20
Alignment explanation
Indices: 19144454--19144509 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
19144444 AAAAGGGGAT
* * *
19144454 AGAATGGGCGCAGGAACTAG
1 AGAATGGGTGCAGGAACCAA
*
19144474 AGAATGGGTGTAGGAACCAA
1 AGAATGGGTGCAGGAACCAA
19144494 AGAATGGGTGCAGGAA
1 AGAATGGGTGCAGGAA
19144510 TTAAAAAAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.38, C:0.11, G:0.39, T:0.12
Consensus pattern (20 bp):
AGAATGGGTGCAGGAACCAA
Found at i:19158407 original size:21 final size:22
Alignment explanation
Indices: 19158383--19158423 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
19158373 AGAACTGATA
19158383 TCTTT-TTTTCATAGA-ATCGAT
1 TCTTTCTTTTCA-AGAGATCGAT
19158404 TCTTTCTTTTCAAGAGATCG
1 TCTTTCTTTTCAAGAGATCG
19158424 GTTCCTCTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.22, C:0.17, G:0.12, T:0.49
Consensus pattern (22 bp):
TCTTTCTTTTCAAGAGATCGAT
Found at i:19159569 original size:36 final size:36
Alignment explanation
Indices: 19159494--19159575 Score: 110
Period size: 36 Copynumber: 2.2 Consensus size: 36
19159484 TCTATTGTTC
* * * * *
19159494 AATGATTATGCATTACATTTATTGATAGTTAATATT
1 AATGATTATGCATTACACTTATTGACAGGTAACAAT
19159530 AATGATTATGCATTACACTTATTGACAGGTAACAAT
1 AATGATTATGCATTACACTTATTGACAGGTAACAAT
19159566 AATGGATTAT
1 AAT-GATTAT
19159576 CTGTCTGTCT
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
36 34 0.85
37 6 0.15
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (36 bp):
AATGATTATGCATTACACTTATTGACAGGTAACAAT
Found at i:19161116 original size:21 final size:19
Alignment explanation
Indices: 19161090--19161133 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 19
19161080 CTTCTTCATC
19161090 TTCATGCCTCCCAATGCCATT
1 TTCATG-CTCCCAA-GCCATT
* *
19161111 TTCATGCTTCTAAGCCATT
1 TTCATGCTCCCAAGCCATT
19161130 TTCA
1 TTCA
19161134 CCTTGCCACC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 10 0.48
20 5 0.24
21 6 0.29
ACGTcount: A:0.20, C:0.32, G:0.09, T:0.39
Consensus pattern (19 bp):
TTCATGCTCCCAAGCCATT
Found at i:19161245 original size:20 final size:21
Alignment explanation
Indices: 19161220--19161274 Score: 76
Period size: 20 Copynumber: 2.6 Consensus size: 21
19161210 GATCAGTTGG
19161220 AAGAAAGGAGAAAGG-AAAGA
1 AAGAAAGGAGAAAGGAAAAGA
*
19161240 AAGAAAGGACAAAGGAAAAGA
1 AAGAAAGGAGAAAGGAAAAGA
*
19161261 GAGAAAGGCAGAAA
1 AAGAAAGG-AGAAA
19161275 AAGCTTAGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
20 14 0.47
21 12 0.40
22 4 0.13
ACGTcount: A:0.64, C:0.04, G:0.33, T:0.00
Consensus pattern (21 bp):
AAGAAAGGAGAAAGGAAAAGA
Found at i:19164189 original size:72 final size:72
Alignment explanation
Indices: 19164110--19164263 Score: 168
Period size: 72 Copynumber: 2.1 Consensus size: 72
19164100 AAATTTTGAA
*
19164110 CCAACCACCAGAAAATTTCTTACT-GTAGCGAGAAAGAATTTCCCTGTAGC-AAAAACCGAGCTA
1 CCAACCACC-GAAAATTTCTCACTAGTA-CGAGAAAGAATTTCCCTGTAGCGAAAAACCGAGCTA
19164173 GCATTTTAC
64 GCATTTTAC
* * * * *** * *
19164182 CCAACCACTCGAGAGTTTCTCGCTATTACGAGAAAGAATTTTGTTGTAGCGAAAACCCGGGCTAG
1 CCAACCAC-CGAAAATTTCTCACTAGTACGAGAAAGAATTTCCCTGTAGCGAAAAACCGAGCTAG
19164247 CATTTTAC
65 CATTTTAC
*
19164255 CCAGCCACC
1 CCAACCACC
19164264 CAAGAGTTTC
Statistics
Matches: 68, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
72 38 0.56
73 30 0.44
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.24
Consensus pattern (72 bp):
CCAACCACCGAAAATTTCTCACTAGTACGAGAAAGAATTTCCCTGTAGCGAAAAACCGAGCTAGC
ATTTTAC
Found at i:19164274 original size:73 final size:72
Alignment explanation
Indices: 19164138--19164274 Score: 193
Period size: 73 Copynumber: 1.9 Consensus size: 72
19164128 CTTACTGTAG
* *
19164138 CGAGAAAGAATTTCCCTGTAGCAAAAACCGAGCTAGCATTTTACCCAACCACTCGAGAGTTTCTC
1 CGAGAAAGAATTTCCCTGTAGCAAAAACCGAGCTAGCATTTTACCCAACCACCCAAGAGTTTCTC
19164203 GCTATTA
66 GCTATTA
*** * * *
19164210 CGAGAAAGAATTTTGTTGTAGCGAAAACCCGGGCTAGCATTTTACCCAGCCACCCAAGAGTTTCT
1 CGAGAAAGAATTTCCCTGTAGC-AAAAACCGAGCTAGCATTTTACCCAACCACCCAAGAGTTTCT
19164275 TGTTGCAGAG
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
72 19 0.34
73 37 0.66
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.25
Consensus pattern (72 bp):
CGAGAAAGAATTTCCCTGTAGCAAAAACCGAGCTAGCATTTTACCCAACCACCCAAGAGTTTCTC
GCTATTA
Found at i:19164301 original size:22 final size:22
Alignment explanation
Indices: 19164271--19164319 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
19164261 ACCCAAGAGT
*
19164271 TTCTTGTTGCAGAGGGAATGCA
1 TTCTCGTTGCAGAGGGAATGCA
*
19164293 TTCTCGTTGCAGCGGGAATGCA
1 TTCTCGTTGCAGAGGGAATGCA
19164315 TTCTC
1 TTCTC
19164320 ACTACAGCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.18, C:0.20, G:0.29, T:0.33
Consensus pattern (22 bp):
TTCTCGTTGCAGAGGGAATGCA
Found at i:19164327 original size:22 final size:22
Alignment explanation
Indices: 19164284--19164328 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
19164274 TTGTTGCAGA
** *
19164284 GGGAATGCATTCTCGTTGCAGC
1 GGGAATGCATTCTCACTACAGC
19164306 GGGAATGCATTCTCACTACAGC
1 GGGAATGCATTCTCACTACAGC
19164328 G
1 G
19164329 AAATTTAAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.24
Consensus pattern (22 bp):
GGGAATGCATTCTCACTACAGC
Found at i:19167326 original size:2 final size:2
Alignment explanation
Indices: 19167321--19167347 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
19167311 ACACACACAC
19167321 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
19167348 CATACATCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:19167493 original size:37 final size:37
Alignment explanation
Indices: 19167397--19167551 Score: 206
Period size: 37 Copynumber: 4.2 Consensus size: 37
19167387 AATGTAATAT
* *
19167397 CATCATCATGCGTGCACTCCTTACTCGCACACTTCAA
1 CATCATCATGTGTGCACTCCCTACTCGCACACTTCAA
* * * *
19167434 CATCATCA-ATGTGCATTCCCTACTCGCATAC-TCTGA
1 CATCATCATGTGTGCACTCCCTACTCGCACACTTC-AA
19167470 CATCATCATGTGTGCACTCCCTACTCGCACACTTCAA
1 CATCATCATGTGTGCACTCCCTACTCGCACACTTCAA
* * *
19167507 CATCATCATGTGTGCACTCCCTACGCACACACTTTAA
1 CATCATCATGTGTGCACTCCCTACTCGCACACTTCAA
19167544 CATCATCA
1 CATCATCA
19167552 CACAACATTA
Statistics
Matches: 102, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
35 2 0.02
36 27 0.26
37 71 0.70
38 2 0.02
ACGTcount: A:0.26, C:0.36, G:0.10, T:0.28
Consensus pattern (37 bp):
CATCATCATGTGTGCACTCCCTACTCGCACACTTCAA
Found at i:19168259 original size:2 final size:2
Alignment explanation
Indices: 19168252--19168302 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
19168242 NNNNNNNNNN
19168252 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
19168294 AG AG AG AG A
1 AG AG AG AG A
19168303 TAAAGTTATG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:19177955 original size:42 final size:42
Alignment explanation
Indices: 19177804--19177957 Score: 164
Period size: 42 Copynumber: 3.7 Consensus size: 42
19177794 GTAATGATAT
* * ** * *
19177804 TGACCAGGCTATGTGCAAGTATGAGTGTGCATAAGCCGATGC
1 TGACCCGGCTATGTGCGAGTGGGAGTGCGCATAAGCAGATGC
* * * *
19177846 TAACCTGACTATGTGCGAGTGGGAGTGCGCATAAGCTGATGC
1 TGACCCGGCTATGTGCGAGTGGGAGTGCGCATAAGCAGATGC
* * *
19177888 TGACTCAGCTATGTGCGAGTAGGAGTGCGCATAAGCAGATGC
1 TGACCCGGCTATGTGCGAGTGGGAGTGCGCATAAGCAGATGC
* * *
19177930 TGACCCGGCCATATGCTAGTGGGAGTGC
1 TGACCCGGCTATGTGCGAGTGGGAGTGC
19177958 ATATGAGCTG
Statistics
Matches: 91, Mismatches: 21, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
42 91 1.00
ACGTcount: A:0.24, C:0.20, G:0.33, T:0.23
Consensus pattern (42 bp):
TGACCCGGCTATGTGCGAGTGGGAGTGCGCATAAGCAGATGC
Found at i:19177967 original size:84 final size:84
Alignment explanation
Indices: 19177811--19177970 Score: 203
Period size: 84 Copynumber: 1.9 Consensus size: 84
19177801 TATTGACCAG
* * * * * * *
19177811 GCTATGTGCAAGTATGAGTGTGCATAAGCCGATGCTAACCTGACTATGTGCGAGTGGGAGTGCGC
1 GCTATGTGCAAGTAGGAGTGCGCATAAGCAGATGCTAACCCGACCATATGCGAGTGGGAGTGCAC
19177876 ATAAGCTGATGCTGACTCA
66 ATAAGCTGATGCTGACTCA
* * * * *
19177895 GCTATGTGCGAGTAGGAGTGCGCATAAGCAGATGCTGACCCGGCCATATGCTAGTGGGAGTGCAT
1 GCTATGTGCAAGTAGGAGTGCGCATAAGCAGATGCTAACCCGACCATATGCGAGTGGGAGTGCAC
*
19177960 ATGAGCTGATG
66 ATAAGCTGATG
19177971 ATGATGGGAG
Statistics
Matches: 63, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
84 63 1.00
ACGTcount: A:0.24, C:0.19, G:0.33, T:0.24
Consensus pattern (84 bp):
GCTATGTGCAAGTAGGAGTGCGCATAAGCAGATGCTAACCCGACCATATGCGAGTGGGAGTGCAC
ATAAGCTGATGCTGACTCA
Found at i:19178005 original size:2 final size:2
Alignment explanation
Indices: 19177998--19178027 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
19177988 ATGATGACGG
*
19177998 AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
19178028 GGATATGTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:19190316 original size:37 final size:36
Alignment explanation
Indices: 19190276--19190394 Score: 175
Period size: 37 Copynumber: 3.2 Consensus size: 36
19190266 AGATGTTGTG
* * *
19190276 TGATGATGTTGAAGTGTACGAGTAAGGAGTGCACACG
1 TGATGATGTT-AAGTGTGCGAGTAGGGAGTGCACACA
*
19190313 TGATGATGATAGAGTGTGCGAGTAGGGAGTGCACACA
1 TGATGATGTTA-AGTGTGCGAGTAGGGAGTGCACACA
19190350 TGATGATGTTAAAGTGTGCGAGTAGGGAGTGCACACA
1 TGATGATGTT-AAGTGTGCGAGTAGGGAGTGCACACA
19190387 TGATGATG
1 TGATGATG
19190395 ATATTGCATT
Statistics
Matches: 75, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
36 1 0.01
37 73 0.97
38 1 0.01
ACGTcount: A:0.29, C:0.10, G:0.36, T:0.24
Consensus pattern (36 bp):
TGATGATGTTAAGTGTGCGAGTAGGGAGTGCACACA
Found at i:19190903 original size:20 final size:19
Alignment explanation
Indices: 19190847--19190907 Score: 86
Period size: 19 Copynumber: 3.2 Consensus size: 19
19190837 GGTGTTTTAG
19190847 TGAGAAACCCTCGGCCAGT
1 TGAGAAACCCTCGGCCAGT
* * *
19190866 TGAGAAACCTTTGACCAGT
1 TGAGAAACCCTCGGCCAGT
19190885 TGAGAAAACCCTCGGCCAGT
1 TGAG-AAACCCTCGGCCAGT
19190905 TGA
1 TGA
19190908 TAAATTGAGC
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
19 20 0.57
20 15 0.43
ACGTcount: A:0.30, C:0.26, G:0.25, T:0.20
Consensus pattern (19 bp):
TGAGAAACCCTCGGCCAGT
Found at i:19191747 original size:4 final size:4
Alignment explanation
Indices: 19191738--19191766 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
19191728 AGTTTGAGGG
19191738 AATA AATA AATA AATA AATA AAT- AATA AA
1 AATA AATA AATA AATA AATA AATA AATA AA
19191767 ATAATAAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
3 3 0.12
4 21 0.88
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AATA
Found at i:19191768 original size:12 final size:11
Alignment explanation
Indices: 19191741--19191782 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 11
19191731 TTGAGGGAAT
19191741 AAATAAATAAA
1 AAATAAATAAA
19191752 TAAATAAATAATA
1 -AAATAAATAA-A
19191765 AAAT-AATAAGA
1 AAATAAATAA-A
19191776 AAATAAA
1 AAATAAA
19191783 AGAATTAAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
11 10 0.37
12 16 0.59
13 1 0.04
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.21
Consensus pattern (11 bp):
AAATAAATAAA
Found at i:19192340 original size:34 final size:35
Alignment explanation
Indices: 19192235--19192375 Score: 92
Period size: 35 Copynumber: 4.0 Consensus size: 35
19192225 GCTGCCATCT
* *
19192235 AGGGAGGAAAGGAGCAGC-TTGGCTGCTGATTTTTTTG
1 AGGGA-GAGAGGAGCAGCTTTGGCTACTGA--TTTTTG
* * * * *
19192272 A-GGAAAAACGAAGCAACTTTGGCTA-TCGAGTTTTG
1 AGGGAGAGA-GGAGCAGCTTTGGCTACT-GATTTTTG
* *
19192307 AGGGAGAGAGGAGTAGC-TTGGCTGCTGATTTTTG
1 AGGGAGAGAGGAGCAGCTTTGGCTACTGATTTTTG
** * *
19192341 AGGTTGATATGAGCAGCTTTGGCTACTGATTTTTG
1 AGGGAGAGAGGAGCAGCTTTGGCTACTGATTTTTG
19192376 GGTTGAAAGG
Statistics
Matches: 80, Mismatches: 18, Indels: 14
0.71 0.16 0.12
Matches are distributed among these distances:
34 25 0.31
35 31 0.39
36 15 0.19
37 9 0.11
ACGTcount: A:0.24, C:0.11, G:0.33, T:0.31
Consensus pattern (35 bp):
AGGGAGAGAGGAGCAGCTTTGGCTACTGATTTTTG
Found at i:19193835 original size:38 final size:40
Alignment explanation
Indices: 19193793--19193869 Score: 95
Period size: 40 Copynumber: 2.0 Consensus size: 40
19193783 GCAAATGGAT
* * * *
19193793 GATGA-TATTGCT-TGTGCATGATGTGGGGGGATGCACAC
1 GATGACTATGGCTATGTGCACGATGTGGCGAGATGCACAC
*
19193831 GATGACTCTGGCTATGTGCACGATGTGGCGAGATGCACA
1 GATGACTATGGCTATGTGCACGATGTGGCGAGATGCACA
19193870 TGAGCTGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
38 5 0.16
39 5 0.16
40 22 0.69
ACGTcount: A:0.22, C:0.17, G:0.35, T:0.26
Consensus pattern (40 bp):
GATGACTATGGCTATGTGCACGATGTGGCGAGATGCACAC
Done.