Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36364294
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2168405 characters in sequence are not A, C, G, or T
File 56 of 91
Found at i:19962700 original size:18 final size:20
Alignment explanation
Indices: 19962668--19962708 Score: 68
Period size: 18 Copynumber: 2.1 Consensus size: 20
19962658 TCATAATTGA
19962668 TAAATAAAAACAATCAAACT
1 TAAATAAAAACAATCAAACT
19962688 TAAA-AAAAA-AATCAAACT
1 TAAATAAAAACAATCAAACT
19962706 TAA
1 TAA
19962709 TTACTAATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 12 0.57
19 5 0.24
20 4 0.19
ACGTcount: A:0.68, C:0.12, G:0.00, T:0.20
Consensus pattern (20 bp):
TAAATAAAAACAATCAAACT
Found at i:19963807 original size:13 final size:15
Alignment explanation
Indices: 19963786--19963823 Score: 53
Period size: 13 Copynumber: 2.7 Consensus size: 15
19963776 TATGTAATTT
19963786 TTATTTAATAAT-AA
1 TTATTTAATAATAAA
*
19963800 TT-TTTAATATTAAA
1 TTATTTAATAATAAA
19963814 TTATTTAATA
1 TTATTTAATA
19963824 TGTTCCACAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 8 0.38
14 6 0.29
15 7 0.33
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
TTATTTAATAATAAA
Found at i:19965413 original size:4 final size:4
Alignment explanation
Indices: 19965404--19965439 Score: 63
Period size: 4 Copynumber: 9.0 Consensus size: 4
19965394 ATTATGGGAT
*
19965404 ATAC ATAC ATAA ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
19965440 GCTTAAAGAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.53, C:0.22, G:0.00, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:19971791 original size:61 final size:61
Alignment explanation
Indices: 19971677--19971795 Score: 166
Period size: 61 Copynumber: 2.0 Consensus size: 61
19971667 ATTCTATTAA
* * * *
19971677 AAATGTATCGATACTTTTGAGGCAGTAAGCATTTTGTTGAAAATGTATCGATACATTTGAC
1 AAATGTATCAATACTTTTGAGGCAGTAAGCATTTTATTGAAAATCTATAGATACATTTGAC
* * **
19971738 AAATGTATCAATGCTTTTGAGGCAGTAAGCATTTTATTGCATTTCTATAGATACATTT
1 AAATGTATCAATACTTTTGAGGCAGTAAGCATTTTATTGAAAATCTATAGATACATTT
19971796 AATTATGTAT
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
61 50 1.00
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.39
Consensus pattern (61 bp):
AAATGTATCAATACTTTTGAGGCAGTAAGCATTTTATTGAAAATCTATAGATACATTTGAC
Found at i:19972494 original size:36 final size:36
Alignment explanation
Indices: 19972417--19972486 Score: 95
Period size: 36 Copynumber: 1.9 Consensus size: 36
19972407 AAGGAAACGT
* *
19972417 GCTTTTTAACAGGATCAAGCATTAAACCTTAGAACC
1 GCTTTTTAACAGGATCAAGCAATAAACCTTACAACC
** *
19972453 GCTTTTTAATGGGATCAAGCAATAACCCTTACAA
1 GCTTTTTAACAGGATCAAGCAATAAACCTTACAA
19972487 TGCCTTTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (36 bp):
GCTTTTTAACAGGATCAAGCAATAAACCTTACAACC
Found at i:19975955 original size:31 final size:31
Alignment explanation
Indices: 19975920--19976004 Score: 125
Period size: 31 Copynumber: 2.7 Consensus size: 31
19975910 ACAAACACTA
* *
19975920 CCTTTTGTGGATCAAGCACAACCTCAAAATG
1 CCTTTTATGGATCAAACACAACCTCAAAATG
* * *
19975951 CCTTTTATGGACCAAACACAACCTTACAATG
1 CCTTTTATGGATCAAACACAACCTCAAAATG
19975982 CCTTTTATGGATCAAACACAACC
1 CCTTTTATGGATCAAACACAACC
19976005 ACTCCACCTT
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 48 1.00
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (31 bp):
CCTTTTATGGATCAAACACAACCTCAAAATG
Found at i:19981630 original size:20 final size:19
Alignment explanation
Indices: 19981605--19981644 Score: 71
Period size: 20 Copynumber: 2.1 Consensus size: 19
19981595 TCTAAAGAAT
19981605 ATCTATCAATAGATGTGCCA
1 ATCTATCAATAGATG-GCCA
19981625 ATCTATCAATAGATGGCCA
1 ATCTATCAATAGATGGCCA
19981644 A
1 A
19981645 ATATATCGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.28
Consensus pattern (19 bp):
ATCTATCAATAGATGGCCA
Found at i:19981651 original size:20 final size:20
Alignment explanation
Indices: 19981608--19981651 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
19981598 AAAGAATATC
*
19981608 TATCAATAGATGTGCCAATC
1 TATCAATAGATGTGCCAATA
19981628 TATCAATAGATG-GCCAAATA
1 TATCAATAGATGTGCC-AATA
19981648 TATC
1 TATC
19981652 GATAAATAGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 3 0.14
20 19 0.86
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.30
Consensus pattern (20 bp):
TATCAATAGATGTGCCAATA
Found at i:20000097 original size:2 final size:2
Alignment explanation
Indices: 20000090--20000130 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
20000080 AATCTATAGC
20000090 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
20000131 CAAGCATGTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:20000234 original size:35 final size:35
Alignment explanation
Indices: 20000195--20000267 Score: 87
Period size: 35 Copynumber: 2.1 Consensus size: 35
20000185 ATAGCTGGAG
*
20000195 TCATCATGTGCA--CCCTCACATCGCGCACATCAACA
1 TCATCATGTGCACTCCCT-AC-TCGCACACATCAACA
* *
20000230 TCATCGTGTGCACTCCCTACTCGCACACATCAATA
1 TCATCATGTGCACTCCCTACTCGCACACATCAACA
20000265 TCA
1 TCA
20000268 CTATCCACAC
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
35 27 0.82
36 2 0.06
37 4 0.12
ACGTcount: A:0.27, C:0.38, G:0.11, T:0.23
Consensus pattern (35 bp):
TCATCATGTGCACTCCCTACTCGCACACATCAACA
Found at i:20010041 original size:25 final size:24
Alignment explanation
Indices: 20010013--20010059 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
20010003 CTAAATAAGA
*
20010013 AAAAGACCAAAAACAAATTAATTGT
1 AAAA-ACCAAAAAAAAATTAATTGT
* *
20010038 AAAATCTAAAAAAAAATTAATT
1 AAAAACCAAAAAAAAATTAATT
20010060 TCAAATAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 15 0.79
25 4 0.21
ACGTcount: A:0.64, C:0.09, G:0.04, T:0.23
Consensus pattern (24 bp):
AAAAACCAAAAAAAAATTAATTGT
Found at i:20013703 original size:21 final size:22
Alignment explanation
Indices: 20013660--20013705 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
20013650 GTTTTGGTTA
20013660 TAGCCAAAATGGATTCTCACTG
1 TAGCCAAAATGGATTCTCACTG
* *
20013682 TAGCGAAAATGGA-TCTCGCTG
1 TAGCCAAAATGGATTCTCACTG
20013703 TAG
1 TAG
20013706 TGAGAAACTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (22 bp):
TAGCCAAAATGGATTCTCACTG
Found at i:20021787 original size:31 final size:31
Alignment explanation
Indices: 20021727--20021787 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 31
20021717 ATATAAGGTA
* ** *
20021727 AAGGTGGTGCATGAAATAGGATTAGAGGAAT
1 AAGGTGGTGCATGAAATAAGAACAAAGGAAT
*
20021758 AAGGTGGTGCATGAAATAATAACAAAGGAA
1 AAGGTGGTGCATGAAATAAGAACAAAGGAA
20021788 GAAATGATGG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.44, C:0.05, G:0.31, T:0.20
Consensus pattern (31 bp):
AAGGTGGTGCATGAAATAAGAACAAAGGAAT
Found at i:20023847 original size:25 final size:25
Alignment explanation
Indices: 20023813--20023871 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 25
20023803 GGTTTGTGAT
* *
20023813 TATACATGGCAAGGCCACAGGATGA
1 TATACGTGGCAAGGCCACAAGATGA
* * *
20023838 TATATGTGGCTAGGCCACAAGTTGA
1 TATACGTGGCAAGGCCACAAGATGA
20023863 TATACGTGG
1 TATACGTGG
20023872 TTGCAACCAC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.24
Consensus pattern (25 bp):
TATACGTGGCAAGGCCACAAGATGA
Found at i:20028816 original size:2 final size:2
Alignment explanation
Indices: 20028811--20028838 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
20028801 CATATTTATC
20028811 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
20028839 CACATCATCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:20028982 original size:42 final size:42
Alignment explanation
Indices: 20028864--20029035 Score: 211
Period size: 42 Copynumber: 4.1 Consensus size: 42
20028854 ACCATCCCAC
* *
20028864 CATCATCAGCTCATGTGCACTCCCTACTCACACATAGTTGGGT
1 CATCATCAGCTCATGTGCACTCCC-ACACACACATAGCTGGGT
* * *
20028907 CATTATCAACTCATGTGCACT-CCACACTGCACATAGCTGGGT
1 CATCATCAGCTCATGTGCACTCCCACAC-ACACATAGCTGGGT
* * * * * *
20028949 TATCATCAGCTTATTTGTAGTCCCACACACACATAGTTGGGT
1 CATCATCAGCTCATGTGCACTCCCACACACACATAGCTGGGT
*
20028991 CATCATCAGCTCATGTGCACTCCCACACGCACATAGCTGGGT
1 CATCATCAGCTCATGTGCACTCCCACACACACATAGCTGGGT
20029033 CAT
1 CAT
20029036 TATTATCACA
Statistics
Matches: 106, Mismatches: 21, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
41 3 0.03
42 78 0.74
43 25 0.24
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (42 bp):
CATCATCAGCTCATGTGCACTCCCACACACACATAGCTGGGT
Found at i:20029007 original size:84 final size:85
Alignment explanation
Indices: 20028865--20029032 Score: 250
Period size: 84 Copynumber: 2.0 Consensus size: 85
20028855 CCATCCCACC
* *
20028865 ATCATCAGCTCATGTGCACTCCCTACTCACACATAGTTGGGTCATTATCAACTCATGTGCACT-C
1 ATCATCAGCTCATGTGCACTCCCTACACACACATAGTTGGGTCATCATCAACTCATGTGCACTCC
20028929 CACACTGCACATAGCTGGGTT
66 CACAC-GCACATAGCTGGGTT
* * * * *
20028950 ATCATCAGCTTATTTGTAGTCCC-ACACACACATAGTTGGGTCATCATCAGCTCATGTGCACTCC
1 ATCATCAGCTCATGTGCACTCCCTACACACACATAGTTGGGTCATCATCAACTCATGTGCACTCC
20029014 CACACGCACATAGCTGGGT
66 CACACGCACATAGCTGGGT
20029033 CATTATTATC
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
84 50 0.67
85 25 0.33
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.27
Consensus pattern (85 bp):
ATCATCAGCTCATGTGCACTCCCTACACACACATAGTTGGGTCATCATCAACTCATGTGCACTCC
CACACGCACATAGCTGGGTT
Found at i:20030673 original size:69 final size:69
Alignment explanation
Indices: 20030557--20030719 Score: 213
Period size: 69 Copynumber: 2.4 Consensus size: 69
20030547 TCTAGTCCAA
* * *
20030557 ATGTAGGGGTAAGAATACCACAAGGTTAAGTTAGGCATCATACCACTTTTTCCC-TCCTTATAAG
1 ATGTGGGGGTAAGAATACCATAAGGTTAAGTTAGGCACCATACCAC-TTTTCCCTTCCTTATAAG
20030621 TC-TCG
65 TCAT-G
* * * *
20030626 ATGTGGGGGTAAGAATACCATAGGGTTAAGTTGGGCACCATGCCACTTTTCCCTTCCTTATGAGT
1 ATGTGGGGGTAAGAATACCATAAGGTTAAGTTAGGCACCATACCACTTTTCCCTTCCTTATAAGT
20030691 CATG
66 CATG
* *
20030695 GTGCGGGGGTAAGAATACCATAAGG
1 ATGTGGGGGTAAGAATACCATAAGG
20030720 ATGAGTGGGC
Statistics
Matches: 82, Mismatches: 10, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
68 7 0.09
69 74 0.90
70 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (69 bp):
ATGTGGGGGTAAGAATACCATAAGGTTAAGTTAGGCACCATACCACTTTTCCCTTCCTTATAAGT
CATG
Found at i:20031672 original size:19 final size:18
Alignment explanation
Indices: 20031642--20031697 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 18
20031632 AGACAAAAAT
20031642 AAAAGCAAAAGAAAGAAAG
1 AAAA-CAAAAGAAAGAAAG
* *
20031661 AAAGACACAAGAAAACAAAG
1 AAA-ACAAAAG-AAAGAAAG
20031681 AAAACAAAAGAGAAGAA
1 AAAACAAAAGA-AAGAA
20031698 TGTAGAAATG
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
18 1 0.03
19 18 0.60
20 11 0.37
ACGTcount: A:0.73, C:0.09, G:0.18, T:0.00
Consensus pattern (18 bp):
AAAACAAAAGAAAGAAAG
Found at i:20032192 original size:34 final size:34
Alignment explanation
Indices: 20032141--20032228 Score: 135
Period size: 34 Copynumber: 2.6 Consensus size: 34
20032131 TTGGCTACTG
20032141 AAAATTT-GAGCTGTTTGCTGCCAATTTGTGCAA
1 AAAATTTGGAGCTGTTTGCTGCCAATTTGTGCAA
*
20032174 AAAATTTGGAGCTATTTGCTGCCAATTTGTGCAA
1 AAAATTTGGAGCTGTTTGCTGCCAATTTGTGCAA
*
20032208 AACAA-TTGGAGTTGTTTGCTG
1 AA-AATTTGGAGCTGTTTGCTG
20032229 GTAGTTTGTG
Statistics
Matches: 50, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
33 7 0.14
34 41 0.82
35 2 0.04
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.36
Consensus pattern (34 bp):
AAAATTTGGAGCTGTTTGCTGCCAATTTGTGCAA
Found at i:20032249 original size:34 final size:33
Alignment explanation
Indices: 20032141--20032268 Score: 132
Period size: 34 Copynumber: 3.7 Consensus size: 33
20032131 TTGGCTACTG
*
20032141 AAAATTTGAGCTGTTTGCTGCCAATTTGTGCAA
1 AAAATTGGAGCTGTTTGCTGCCAATTTGTGCAA
*
20032174 AAAATTTGGAGCTATTTGCTGCCAATTTGTGCAA
1 AAAA-TTGGAGCTGTTTGCTGCCAATTTGTGCAA
* ** * *
20032208 AACAATTGGAGTTGTTTGCTGGTAGTTTGTGCAGG
1 AA-AATTGGAGCTGTTTGCTGCCAATTTGTGCA-A
20032243 AAAATTGGACAGCT-TTGTGCTGCCAA
1 AAAATTGG--AGCTGTT-TGCTGCCAA
20032269 AATTGAGAAG
Statistics
Matches: 77, Mismatches: 12, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
33 4 0.05
34 58 0.75
35 6 0.08
36 9 0.12
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (33 bp):
AAAATTGGAGCTGTTTGCTGCCAATTTGTGCAA
Found at i:20032283 original size:24 final size:25
Alignment explanation
Indices: 20032243--20032289 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
20032233 TTTGTGCAGG
20032243 AAAATTGGACAGCTTTG-TGCTGCC
1 AAAATTGGACAGCTTTGTTGCTGCC
*
20032267 AAAATTGAGA-AGTTTTGTTGCTG
1 AAAATTG-GACAGCTTTGTTGCTG
20032290 GAAATTTGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.34
Consensus pattern (25 bp):
AAAATTGGACAGCTTTGTTGCTGCC
Found at i:20032517 original size:25 final size:25
Alignment explanation
Indices: 20032489--20032547 Score: 84
Period size: 25 Copynumber: 2.4 Consensus size: 25
20032479 AAAAGAAATT
20032489 GAAAATAAATGGGCATGACCCAATA
1 GAAAATAAATGGGCATGACCCAATA
* *
20032514 GAAAATAAGTGGGCATGGCCCAATA
1 GAAAATAAATGGGCATGACCCAATA
20032539 -AGAAATAAA
1 GA-AAATAAA
20032548 AATAAATGAG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
24 1 0.03
25 29 0.97
ACGTcount: A:0.49, C:0.14, G:0.22, T:0.15
Consensus pattern (25 bp):
GAAAATAAATGGGCATGACCCAATA
Found at i:20040658 original size:120 final size:122
Alignment explanation
Indices: 20040496--20040738 Score: 411
Period size: 120 Copynumber: 2.0 Consensus size: 122
20040486 GAAAATGGAA
* *
20040496 TATTTTATTGAATATTTTTATTATATCCAAATAATTATAATTTCATTTTAAATGAAGGTTTTAGA
1 TATTTTATTGAATATTTTTATTATATCCAAATAATCAAAATTTCATTTTAAATGAAGGTTTTAGA
20040561 CGTTTAAACTTA-TTTTTGATTATGAATTATGTG-TTTTGTACTCGCATACTACANTT
66 CGTTTAAACTTATTTTTTGATTATGAATTATGTGTTTTTGTACTCGCATACTACA-TT
* *
20040617 TATTTTATTGAA-ATTTTTATTATATTCAAATAGTCAAAATTTCATTTTAAATGAAGGTTTTAGA
1 TATTTTATTGAATATTTTTATTATATCCAAATAATCAAAATTTCATTTTAAATGAAGGTTTTAGA
*
20040681 CGTTTAAATTTATTTTTTGATTATGAATTATGTGTTTTTGTACTCGCATACTACATT
66 CGTTTAAACTTATTTTTTGATTATGAATTATGTGTTTTTGTACTCGCATACTACATT
20040738 T
1 T
20040739 TTAGCTGGTT
Statistics
Matches: 115, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
120 59 0.51
121 36 0.31
122 20 0.17
ACGTcount: A:0.31, C:0.08, G:0.10, T:0.50
Consensus pattern (122 bp):
TATTTTATTGAATATTTTTATTATATCCAAATAATCAAAATTTCATTTTAAATGAAGGTTTTAGA
CGTTTAAACTTATTTTTTGATTATGAATTATGTGTTTTTGTACTCGCATACTACATT
Found at i:20048283 original size:26 final size:25
Alignment explanation
Indices: 20048252--20048302 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
20048242 ACTTGAAATT
20048252 TAAAAGCAA-AAACTATAACAAGCAAA
1 TAAAAGCAAGAAA-TATAA-AAGCAAA
*
20048278 TAAAAGTAAGAAATATAAAAGCAAA
1 TAAAAGCAAGAAATATAAAAGCAAA
20048303 GTTTTAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 7 0.30
26 13 0.57
27 3 0.13
ACGTcount: A:0.67, C:0.10, G:0.10, T:0.14
Consensus pattern (25 bp):
TAAAAGCAAGAAATATAAAAGCAAA
Found at i:20050283 original size:152 final size:150
Alignment explanation
Indices: 20050007--20050309 Score: 588
Period size: 152 Copynumber: 2.0 Consensus size: 150
20049997 AGATATCAAG
20050007 GTGAGTAGTAAATTAGAAATGAGTTTTAAGTGTTCATAATGTTTAGTGATTGATTTGTGAGTTTA
1 GTGAGTAGTAAATTAGAAATGAGTTTTAAGTGTTCATAATGTTTAGTGATTGATTTGTGAGTTTA
20050072 TTGTTGAGATTGTGTATTGACTCTAATGTAATTAGGTAGTGAACATAGATAGCCATTTAAAATGG
66 TTGTTGAGATTGTGTATTGACTCTAATGTAATTAGGTAGTGAACATAGATAGCCATTTAAAATGG
20050137 CAATTGAAAGCTAGTTAAGA
131 CAATTGAAAGCTAGTTAAGA
20050157 GNTGAGTAGTAAATTAGAAATGAGTTTTAAGTGTTCATAATGTTTAGTGATTGATTTGTTGAGTT
1 G-TGAGTAGTAAATTAGAAATGAGTTTTAAGTGTTCATAATGTTTAGTGATTGATTTG-TGAGTT
20050222 TATTGTTGAGATTGTGTATTGACTCTAATGTAATTAGGTAGTGAACATAGATAGCCATTTAAAAT
64 TATTGTTGAGATTGTGTATTGACTCTAATGTAATTAGGTAGTGAACATAGATAGCCATTTAAAAT
20050287 GGCAATTGAAAGCTAGTTAAGA
129 GGCAATTGAAAGCTAGTTAAGA
20050309 G
1 G
20050310 ATAGCTTTTA
Statistics
Matches: 151, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
150 1 0.01
151 56 0.37
152 94 0.62
ACGTcount: A:0.33, C:0.05, G:0.23, T:0.38
Consensus pattern (150 bp):
GTGAGTAGTAAATTAGAAATGAGTTTTAAGTGTTCATAATGTTTAGTGATTGATTTGTGAGTTTA
TTGTTGAGATTGTGTATTGACTCTAATGTAATTAGGTAGTGAACATAGATAGCCATTTAAAATGG
CAATTGAAAGCTAGTTAAGA
Found at i:20050731 original size:43 final size:43
Alignment explanation
Indices: 20050668--20050779 Score: 170
Period size: 43 Copynumber: 2.6 Consensus size: 43
20050658 TATGAACTCG
*
20050668 GCTATGTGCGAGTAGGGAGTGCGCATAAGCCGATGATGACCCA
1 GCTATGTGCGAGTAGGGAGTGCGCATAAACCGATGATGACCCA
* * * *
20050711 GTTATGTGCAAGTAGGGAGTGCGCATAAATCGGTGATGACCCA
1 GCTATGTGCGAGTAGGGAGTGCGCATAAACCGATGATGACCCA
*
20050754 GCCATGTGCGAGTAGGGAGTGCGCAT
1 GCTATGTGCGAGTAGGGAGTGCGCAT
20050780 GAGCTGGTGA
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 61 1.00
ACGTcount: A:0.25, C:0.19, G:0.36, T:0.21
Consensus pattern (43 bp):
GCTATGTGCGAGTAGGGAGTGCGCATAAACCGATGATGACCCA
Found at i:20050789 original size:43 final size:42
Alignment explanation
Indices: 20050671--20050792 Score: 154
Period size: 43 Copynumber: 2.8 Consensus size: 42
20050661 GAACTCGGCT
* * **
20050671 ATGTGCGAGTAGGGAGTGCGCATAAGCCGATGATGACCCAGTT
1 ATGTGCGAGTAGGGAGTGCGCAT-AGCTGGTGATGACCCAGCC
* **
20050714 ATGTGCAAGTAGGGAGTGCGCATAAATCGGTGATGACCCAGCC
1 ATGTGCGAGTAGGGAGTGCGCATAGCT-GGTGATGACCCAGCC
20050757 ATGTGCGAGTAGGGAGTGCGCATGAGCTGGTGATGA
1 ATGTGCGAGTAGGGAGTGCGCAT-AGCTGGTGATGA
20050793 TGGGATGGTG
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
42 1 0.01
43 64 0.96
44 2 0.03
ACGTcount: A:0.25, C:0.17, G:0.37, T:0.20
Consensus pattern (42 bp):
ATGTGCGAGTAGGGAGTGCGCATAGCTGGTGATGACCCAGCC
Found at i:20053570 original size:2 final size:2
Alignment explanation
Indices: 20053563--20053588 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
20053553 TACTGTGTTG
20053563 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
20053589 CTGTGTGTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:20053687 original size:42 final size:42
Alignment explanation
Indices: 20053633--20053764 Score: 147
Period size: 42 Copynumber: 3.1 Consensus size: 42
20053623 GTAATGATAT
* * *
20053633 TGACCCAGCTATGTGCGAGTAGGAATGTGCATAAACTGATGC
1 TGACCCGGCTATGTGCGAGTAGGAATGCGCATAAACCGATGC
* ** * *
20053675 TGACTCGGCTATGTGCGAGGGGGAGTGCGCATAAGCCGATGC
1 TGACCCGGCTATGTGCGAGTAGGAATGCGCATAAACCGATGC
* * **
20053717 TGACCCGGCTATGTGCGAGTAGGAGTGCCCATAAGTCGATGC
1 TGACCCGGCTATGTGCGAGTAGGAATGCGCATAAACCGATGC
*
20053759 TAACCC
1 TGACCC
20053765 AACCATGTGC
Statistics
Matches: 76, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 76 1.00
ACGTcount: A:0.23, C:0.23, G:0.33, T:0.21
Consensus pattern (42 bp):
TGACCCGGCTATGTGCGAGTAGGAATGCGCATAAACCGATGC
Found at i:20053773 original size:42 final size:42
Alignment explanation
Indices: 20053685--20053786 Score: 123
Period size: 42 Copynumber: 2.4 Consensus size: 42
20053675 TGACTCGGCT
* * * ** *
20053685 ATGTGCGAGGGGGAGTGCGCATAAGCCGATGCTGACCCGGCT
1 ATGTGCGAGTGGGAGTGCCCATAAGCCGATGCTAACCCAACC
* *
20053727 ATGTGCGAGTAGGAGTGCCCATAAGTCGATGCTAACCCAACC
1 ATGTGCGAGTGGGAGTGCCCATAAGCCGATGCTAACCCAACC
*
20053769 ATGTGCTAGTGGGAGTGC
1 ATGTGCGAGTGGGAGTGC
20053787 ATATGAGCTG
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.23, C:0.23, G:0.35, T:0.20
Consensus pattern (42 bp):
ATGTGCGAGTGGGAGTGCCCATAAGCCGATGCTAACCCAACC
Found at i:20055421 original size:2 final size:2
Alignment explanation
Indices: 20055414--20055452 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
20055404 AGTTGTTTGA
20055414 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
20055453 GTAAGAAGGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:20057970 original size:43 final size:41
Alignment explanation
Indices: 20057916--20058051 Score: 148
Period size: 43 Copynumber: 3.2 Consensus size: 41
20057906 AGCAGGGTTA
*
20057916 TCATCATCGGCTTATGCACACTCTCTACTCGCACATAGCCAGG
1 TCATCATCGGCTTATGC-CACTC-CTACTCGCACATAGCCGGG
*
20057959 TCATCATCGGCTTACGCGCACTCCCTACTCGCACATAGCCGGG
1 TCATCATCGGCTTATGC-CACT-CCTACTCGCACATAGCCGGG
* * * *
20058002 TTATCATCAGCTCATATG-CACTCCCACATCGCACATAGCTGGG
1 TCATCATCGGCT--TATGCCACTCCTAC-TCGCACATAGCCGGG
20058045 TCATCAT
1 TCATCAT
20058052 TATCACACAA
Statistics
Matches: 80, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
42 4 0.05
43 72 0.90
44 1 0.01
45 3 0.04
ACGTcount: A:0.23, C:0.35, G:0.17, T:0.25
Consensus pattern (41 bp):
TCATCATCGGCTTATGCCACTCCTACTCGCACATAGCCGGG
Found at i:20061896 original size:19 final size:20
Alignment explanation
Indices: 20061859--20061898 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
20061849 CGCGATTTCC
20061859 CCTTTGAATTTTCTACTTTT
1 CCTTTGAATTTTCTACTTTT
*
20061879 CCTTTGATTTTTCT-CTTTT
1 CCTTTGAATTTTCTACTTTT
20061898 C
1 C
20061899 TTCCTTTCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.10, C:0.23, G:0.05, T:0.62
Consensus pattern (20 bp):
CCTTTGAATTTTCTACTTTT
Found at i:20066144 original size:20 final size:20
Alignment explanation
Indices: 20066119--20066157 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
20066109 ACTATTTATC
*
20066119 GATAGATGGGGCCATCTATG
1 GATAGATCGGGCCATCTATG
*
20066139 GATAGATCTGGCCATCTAT
1 GATAGATCGGGCCATCTAT
20066158 CCATAGTAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (20 bp):
GATAGATCGGGCCATCTATG
Found at i:20073437 original size:2 final size:2
Alignment explanation
Indices: 20073432--20073494 Score: 92
Period size: 2 Copynumber: 31.5 Consensus size: 2
20073422 CTCACATGCG
20073432 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CGA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA C-A
* *
20073475 -A CA CA GA CA AA CA CA CA CA C
1 CA CA CA CA CA CA CA CA CA CA C
20073495 TCACCATGTC
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
1 1 0.02
2 53 0.96
3 1 0.02
ACGTcount: A:0.51, C:0.46, G:0.03, T:0.00
Consensus pattern (2 bp):
CA
Found at i:20078176 original size:31 final size:32
Alignment explanation
Indices: 20078117--20078178 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
20078107 ATTTCAGAAC
20078117 TCCTTCAGATCCTATTTTGCAAACACTGAAAA
1 TCCTTCAGATCCTATTTTGCAAACACTGAAAA
20078149 TCCTTCAGATCCTATTTTGC-AACACTGAAA
1 TCCTTCAGATCCTATTTTGCAAACACTGAAA
20078179 TTAATGGTGA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 10 0.33
32 20 0.67
ACGTcount: A:0.32, C:0.26, G:0.10, T:0.32
Consensus pattern (32 bp):
TCCTTCAGATCCTATTTTGCAAACACTGAAAA
Found at i:20086850 original size:3 final size:3
Alignment explanation
Indices: 20086842--20086867 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
20086832 AGGAGTGCAC
20086842 ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG AT
20086868 ATGGAAATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.31, T:0.35
Consensus pattern (3 bp):
ATG
Found at i:20087959 original size:36 final size:36
Alignment explanation
Indices: 20087918--20088097 Score: 185
Period size: 36 Copynumber: 5.2 Consensus size: 36
20087908 ATTTGTTTAA
* *
20087918 TTTAATCAATTAGGCCTAATAAGTTAATTAAACAAT
1 TTTAATCAATTAGGCCTAATGACTTAATTAAACAAT
* *
20087954 TTTAATCAATTAGGCCCAATGACTTAATTAAACAAA
1 TTTAATCAATTAGGCCTAATGACTTAATTAAACAAT
* ****
20087990 TTTAATCTATTAGGCCTAATGACTTAATTGTTTAA-
1 TTTAATCAATTAGGCCTAATGACTTAATTAAACAAT
* *
20088025 TTTAATTAATTAGACCTAATGACTTAATTAAACAA-
1 TTTAATCAATTAGGCCTAATGACTTAATTAAACAAT
* *
20088060 TTTAAT-TATTAAG-C-ACA--ACTTAATTAAACAAT
1 TTTAATCAATTAGGCCTA-ATGACTTAATTAAACAAT
20088092 TTTAAT
1 TTTAAT
20088098 AAAGTGCTTG
Statistics
Matches: 122, Mismatches: 20, Indels: 8
0.81 0.13 0.05
Matches are distributed among these distances:
31 14 0.11
32 7 0.06
33 2 0.02
34 4 0.03
35 34 0.28
36 61 0.50
ACGTcount: A:0.42, C:0.12, G:0.07, T:0.38
Consensus pattern (36 bp):
TTTAATCAATTAGGCCTAATGACTTAATTAAACAAT
Found at i:20090757 original size:37 final size:37
Alignment explanation
Indices: 20090703--20090821 Score: 184
Period size: 37 Copynumber: 3.2 Consensus size: 37
20090693 TATATACATA
*
20090703 CATCGTCATCATGTGTGCACTCCCTACTCGCACACTC
1 CATCATCATCATGTGTGCACTCCCTACTCGCACACTC
* *
20090740 TATTATCATCATGTGTGCACTCCCTACTCGCACACTC
1 CATCATCATCATGTGTGCACTCCCTACTCGCACACTC
* *
20090777 CATCATCATCATTTGTGCACTCCCTACTCGCACACTT
1 CATCATCATCATGTGTGCACTCCCTACTCGCACACTC
*
20090814 CAACATCA
1 CATCATCA
20090822 CCACCCAACA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 74 1.00
ACGTcount: A:0.23, C:0.38, G:0.10, T:0.29
Consensus pattern (37 bp):
CATCATCATCATGTGTGCACTCCCTACTCGCACACTC
Found at i:20106042 original size:95 final size:95
Alignment explanation
Indices: 20105933--20106124 Score: 384
Period size: 95 Copynumber: 2.0 Consensus size: 95
20105923 TCATCTAAAT
20105933 GTAAGTTGGTTTAGTTTCAAAATTATTTGCATTGATGGAAGGTTTTTTAATGCTTTAGTGCAAAC
1 GTAAGTTGGTTTAGTTTCAAAATTATTTGCATTGATGGAAGGTTTTTTAATGCTTTAGTGCAAAC
20105998 CTTGCAAAAGAGGAACATCATAATCCCACA
66 CTTGCAAAAGAGGAACATCATAATCCCACA
20106028 GTAAGTTGGTTTAGTTTCAAAATTATTTGCATTGATGGAAGGTTTTTTAATGCTTTAGTGCAAAC
1 GTAAGTTGGTTTAGTTTCAAAATTATTTGCATTGATGGAAGGTTTTTTAATGCTTTAGTGCAAAC
20106093 CTTGCAAAAGAGGAACATCATAATCCCACA
66 CTTGCAAAAGAGGAACATCATAATCCCACA
20106123 GT
1 GT
20106125 GCTCTATTTT
Statistics
Matches: 97, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
95 97 1.00
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.35
Consensus pattern (95 bp):
GTAAGTTGGTTTAGTTTCAAAATTATTTGCATTGATGGAAGGTTTTTTAATGCTTTAGTGCAAAC
CTTGCAAAAGAGGAACATCATAATCCCACA
Found at i:20110706 original size:13 final size:13
Alignment explanation
Indices: 20110688--20110712 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
20110678 ATTTTTAAAA
20110688 ATTTTATAAAATT
1 ATTTTATAAAATT
20110701 ATTTTATAAAAT
1 ATTTTATAAAAT
20110713 CCCATTTTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATTTTATAAAATT
Found at i:20119514 original size:21 final size:22
Alignment explanation
Indices: 20119489--20119529 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
20119479 CCTAGGTGGA
*
20119489 AAAATTCAAGGGAA-AAGTGTG
1 AAAATTCAAGGAAACAAGTGTG
20119510 AAAATTCAAGGAAACAAGTG
1 AAAATTCAAGGAAACAAGTG
20119530 AAAAAAAGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.51, C:0.07, G:0.24, T:0.17
Consensus pattern (22 bp):
AAAATTCAAGGAAACAAGTGTG
Found at i:20119530 original size:20 final size:21
Alignment explanation
Indices: 20119489--20119533 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
20119479 CCTAGGTGGA
*
20119489 AAAATTCAAGGGAAAAGTGTG
1 AAAATTCAAGGGAAAAGAGTG
20119510 AAAATTCAA-GGAAACA-AGTG
1 AAAATTCAAGGGAAA-AGAGTG
20119530 AAAA
1 AAAA
20119534 AAAGGTAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.56, C:0.07, G:0.22, T:0.16
Consensus pattern (21 bp):
AAAATTCAAGGGAAAAGAGTG
Found at i:20119534 original size:21 final size:20
Alignment explanation
Indices: 20119487--20119534 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 20
20119477 ATCCTAGGTG
*
20119487 GAAAAATTCAAGGGAAAAGT
1 GAAAAATTCAAGGAAAAAGT
*
20119507 GTGAAAATTCAAGGAAACAAGT
1 G-AAAAATTCAAGGAAA-AAGT
20119529 GAAAAA
1 GAAAAA
20119535 AAGGTAAGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 17 0.74
22 5 0.22
ACGTcount: A:0.56, C:0.06, G:0.23, T:0.15
Consensus pattern (20 bp):
GAAAAATTCAAGGAAAAAGT
Found at i:20134816 original size:2 final size:2
Alignment explanation
Indices: 20134811--20134836 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
20134801 ATTATATACA
20134811 TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG
20134837 ACTACTTCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:20135594 original size:3 final size:3
Alignment explanation
Indices: 20135580--20135614 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
20135570 GGCCATTCGA
* *
20135580 TAT TAA TAT TAT TAT TAT AAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
20135615 CTATCATATT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:20154301 original size:2 final size:2
Alignment explanation
Indices: 20154288--20154326 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
20154278 TATTGGTGTT
*
20154288 TA TA TA TG TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
20154327 TTATGCAATA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (2 bp):
TA
Found at i:20157065 original size:20 final size:19
Alignment explanation
Indices: 20157029--20157070 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
20157019 ATTAGGTTAC
20157029 TTTTAGTTAGTTATTTTAA
1 TTTTAGTTAGTTATTTTAA
* *
20157048 TTTTATGTTATTTCTTTTAA
1 TTTTA-GTTAGTTATTTTAA
20157068 TTT
1 TTT
20157071 GTTTATTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.21, C:0.02, G:0.07, T:0.69
Consensus pattern (19 bp):
TTTTAGTTAGTTATTTTAA
Found at i:20162846 original size:54 final size:54
Alignment explanation
Indices: 20162764--20162920 Score: 244
Period size: 54 Copynumber: 2.9 Consensus size: 54
20162754 ATTCGTATAC
* * * **
20162764 CACCCAATCTCACCCAACTCATGTGCATCCCCCCACATTGTGCACATAGCCAGA
1 CACCCCATCTCAACCAGCTCATGTGCATCCCCCCACATCATGCACATAGCCAGA
*
20162818 CACCCCATCTCAACCAGCTCATGTGCATCCCCCCACATCATGCACATAGCCGGA
1 CACCCCATCTCAACCAGCTCATGTGCATCCCCCCACATCATGCACATAGCCAGA
*
20162872 CACCCCATCTC-ACCAGCTCATGTGTATCCCCCCACATCATGCACATAGC
1 CACCCCATCTCAACCAGCTCATGTGCATCCCCCCACATCATGCACATAGC
20162921 TAGAGTCATC
Statistics
Matches: 96, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
53 37 0.39
54 59 0.61
ACGTcount: A:0.26, C:0.44, G:0.11, T:0.18
Consensus pattern (54 bp):
CACCCCATCTCAACCAGCTCATGTGCATCCCCCCACATCATGCACATAGCCAGA
Found at i:20164038 original size:18 final size:19
Alignment explanation
Indices: 20164015--20164050 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
20164005 GAATCCATTT
20164015 TCGCTGCAGCAA-AATTCA
1 TCGCTGCAGCAAGAATTCA
20164033 TCGCTGCAGCAAGAATTC
1 TCGCTGCAGCAAGAATTC
20164051 TTTTTCATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (19 bp):
TCGCTGCAGCAAGAATTCA
Found at i:20164446 original size:46 final size:45
Alignment explanation
Indices: 20164340--20164450 Score: 120
Period size: 43 Copynumber: 2.5 Consensus size: 45
20164330 CATTCATCGT
* *
20164340 CATAGCTGGGTCATCATCATCAGCTTATGCACACTCCTTACTCGCA
1 CATAGCTGGG-CATCATCATCAGCTCATGCACACTCCTCACTCGCA
* * **
20164386 CATAGCCGGG--TCATCATTAGCTCATGTGCACTCC-CACATCGCA
1 CATAGCTGGGCATCATCATCAGCTCATGCACACTCCTCAC-TCGCA
20164429 CATAGCTGGGCCATCATCATCA
1 CATAGCTGGG-CATCATCATCA
20164451 CACAACATTA
Statistics
Matches: 53, Mismatches: 8, Indels: 8
0.77 0.12 0.12
Matches are distributed among these distances:
42 2 0.04
43 34 0.64
46 17 0.32
ACGTcount: A:0.24, C:0.33, G:0.17, T:0.25
Consensus pattern (45 bp):
CATAGCTGGGCATCATCATCAGCTCATGCACACTCCTCACTCGCA
Found at i:20165664 original size:2 final size:2
Alignment explanation
Indices: 20165657--20165682 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
20165647 GAGGTACTAC
20165657 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
20165683 CAACATCATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:20169574 original size:15 final size:15
Alignment explanation
Indices: 20169556--20169585 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
20169546 AAGTCACAAC
20169556 TTTGCCAAATTAATT
1 TTTGCCAAATTAATT
20169571 TTTGCCAAATTAATT
1 TTTGCCAAATTAATT
20169586 AACACAAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.13, G:0.07, T:0.47
Consensus pattern (15 bp):
TTTGCCAAATTAATT
Found at i:20171525 original size:21 final size:21
Alignment explanation
Indices: 20171484--20171527 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
20171474 TGGACCTAAG
* *
20171484 AAGTTGACCTTATTGCATAAA
1 AAGTTGACCTTAGTGAATAAA
20171505 AAGTTGACCTT-GTGAAGTAAA
1 AAGTTGACCTTAGTGAA-TAAA
20171526 AA
1 AA
20171528 TAGGGGGAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 3 0.15
21 17 0.85
ACGTcount: A:0.41, C:0.11, G:0.18, T:0.30
Consensus pattern (21 bp):
AAGTTGACCTTAGTGAATAAA
Found at i:20182925 original size:16 final size:16
Alignment explanation
Indices: 20182904--20182934 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
20182894 GCGAGATTAG
*
20182904 TACCACCGTCCTTGTT
1 TACCACCATCCTTGTT
20182920 TACCACCATCCTTGT
1 TACCACCATCCTTGT
20182935 AGGCACACAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.39, G:0.10, T:0.35
Consensus pattern (16 bp):
TACCACCATCCTTGTT
Found at i:20184702 original size:32 final size:31
Alignment explanation
Indices: 20184666--20184772 Score: 101
Period size: 31 Copynumber: 3.4 Consensus size: 31
20184656 GAATTGGAAC
*
20184666 TTGATATTTGTTTTGAACTTTGGACTTTGGTA
1 TTGATATTTGTTTAG-ACTTTGGACTTTGGTA
* * *
20184698 TTGATA-TTGTTTCGACTTTAGACTTTGGATT
1 TTGATATTTGTTTAGACTTTGGACTTTGG-TA
* * * *
20184729 TTGGTAATTGTTTAGACTTCGGTCTTTGG-A
1 TTGATATTTGTTTAGACTTTGGACTTTGGTA
20184759 TTTGATATTTGTTT
1 -TTGATATTTGTTT
20184773 CAACCTTGGT
Statistics
Matches: 61, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
30 13 0.21
31 24 0.39
32 24 0.39
ACGTcount: A:0.18, C:0.07, G:0.21, T:0.53
Consensus pattern (31 bp):
TTGATATTTGTTTAGACTTTGGACTTTGGTA
Found at i:20188014 original size:32 final size:32
Alignment explanation
Indices: 20187978--20188088 Score: 98
Period size: 32 Copynumber: 3.5 Consensus size: 32
20187968 CGCTTCTAGT
* * * *
20187978 TGTAACCATAAATCAAAACTTGCCTTTCCAGG
1 TGTAATCATAAATCAAAACTCGCCTCTCCAAG
* *
20188010 TGTAATCGTAAATCAATACTCGCCTCTCCAAG
1 TGTAATCATAAATCAAAACTCGCCTCTCCAAG
* * * *
20188042 CGTAATCATAAAACCACAC-CTGCCTCTCCAAG
1 TGTAATCATAAATCAAAACTC-GCCTCTCCAAG
* *
20188074 CGTAATCACAAATCA
1 TGTAATCATAAATCA
20188089 TCACCCGCCT
Statistics
Matches: 64, Mismatches: 14, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
31 1 0.02
32 63 0.98
ACGTcount: A:0.35, C:0.30, G:0.11, T:0.24
Consensus pattern (32 bp):
TGTAATCATAAATCAAAACTCGCCTCTCCAAG
Found at i:20188104 original size:32 final size:32
Alignment explanation
Indices: 20188030--20188106 Score: 102
Period size: 32 Copynumber: 2.4 Consensus size: 32
20188020 AATCAATACT
*
20188030 CGCCTCTCCAAGCGTAATCATAAAACCA-CACC
1 CGCCTCTCCAAGCGTAATCA-AAAATCATCACC
* *
20188062 TGCCTCTCCAAGCGTAATCACAAATCATCACC
1 CGCCTCTCCAAGCGTAATCAAAAATCATCACC
*
20188094 CGCCTTTCCAAGC
1 CGCCTCTCCAAGC
20188107 ATGTCAAATA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
31 5 0.13
32 34 0.87
ACGTcount: A:0.30, C:0.40, G:0.10, T:0.19
Consensus pattern (32 bp):
CGCCTCTCCAAGCGTAATCAAAAATCATCACC
Found at i:20210436 original size:55 final size:55
Alignment explanation
Indices: 20210350--20210503 Score: 191
Period size: 55 Copynumber: 2.8 Consensus size: 55
20210340 AACCACTGGC
* * *
20210350 TCATCAGCTCATGTGCACTCCCATACCACACATAGCTGGAATCATCATCCACCAG
1 TCATCAGCTCATGTGCACTCCCACACTACACATAGCTGGAATCATCACCCACCAG
* *** * **
20210405 TCATCAGCTTATGTGCACTCCCACACTACACATAGCCAAAATTATCACCCACTGG
1 TCATCAGCTCATGTGCACTCCCACACTACACATAGCTGGAATCATCACCCACCAG
* * *
20210460 TCATTAGCTCATGTGCACTCCCACACTGCACATAGTTGGAATCA
1 TCATCAGCTCATGTGCACTCCCACACTACACATAGCTGGAATCA
20210504 CCCGTCATCA
Statistics
Matches: 81, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
55 81 1.00
ACGTcount: A:0.29, C:0.34, G:0.13, T:0.24
Consensus pattern (55 bp):
TCATCAGCTCATGTGCACTCCCACACTACACATAGCTGGAATCATCACCCACCAG
Found at i:20218131 original size:40 final size:39
Alignment explanation
Indices: 20218103--20218208 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 39
20218093 ATAGTGCCCG
* *
20218103 TGTGCACGATGTGGGGGGATGTACATGATGGCACTG-AT
1 TGTGCACGATGTGGGGGGATGTACATGATGGCAGTGCAA
* * *
20218141 TGTGCACGATGTGGGGGGATGCACAGGATGGCGCAG-GCTA
1 TGTGCACGATGTGGGGGGATGTACATGAT-G-GCAGTGCAA
20218181 TGTGCACGATGTGGGGGGATGTACATGA
1 TGTGCACGATGTGGGGGGATGTACATGA
20218209 GCCAAGTGTG
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
38 27 0.47
39 2 0.03
40 29 0.50
ACGTcount: A:0.21, C:0.14, G:0.42, T:0.23
Consensus pattern (39 bp):
TGTGCACGATGTGGGGGGATGTACATGATGGCAGTGCAA
Found at i:20218146 original size:38 final size:40
Alignment explanation
Indices: 20218103--20218208 Score: 153
Period size: 38 Copynumber: 2.7 Consensus size: 40
20218093 ATAGTGCCCG
*
20218103 TGTGCACGATGTGGGGGGATGTACATGATGGCAC-TGAT-
1 TGTGCACGATGTGGGGGGATGTACATGATGGCACAGGATA
* * * *
20218141 TGTGCACGATGTGGGGGGATGCACAGGATGGCGCAGGCTA
1 TGTGCACGATGTGGGGGGATGTACATGATGGCACAGGATA
20218181 TGTGCACGATGTGGGGGGATGTACATGA
1 TGTGCACGATGTGGGGGGATGTACATGA
20218209 GCCAAGTGTG
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
38 31 0.53
39 2 0.03
40 26 0.44
ACGTcount: A:0.21, C:0.14, G:0.42, T:0.23
Consensus pattern (40 bp):
TGTGCACGATGTGGGGGGATGTACATGATGGCACAGGATA
Found at i:20220703 original size:75 final size:75
Alignment explanation
Indices: 20220521--20220696 Score: 271
Period size: 75 Copynumber: 2.3 Consensus size: 75
20220511 AGGTTTTGAA
* * *
20220521 CAACCACCCGAGAATTTCTCGCTGCAGCGAGAATGCAATTTCACTACAGCGAAAACCAAGGTTAG
1 CAACCACCCGAGAGTTTCTCGCTGCAGCGAGAATGCAATTTCACTACAGCAAAAACCAAGGCTAG
20220586 CATTTTACCC
66 CATTTTACCC
** * ** *
20220596 CAACCACTTGAGAGTTTCTCGTTGCAGCGAGAATGCAATTTCACTGTAGCAAAAACCAAGGCTGG
1 CAACCACCCGAGAGTTTCTCGCTGCAGCGAGAATGCAATTTCACTACAGCAAAAACCAAGGCTAG
20220661 CATTTTACCC
66 CATTTTACCC
20220671 CAACCACCCGAGAGTTTCTCGCTGCA
1 CAACCACCCGAGAGTTTCTCGCTGCA
20220697 ATGAGAAATA
Statistics
Matches: 89, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
75 89 1.00
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.23
Consensus pattern (75 bp):
CAACCACCCGAGAGTTTCTCGCTGCAGCGAGAATGCAATTTCACTACAGCAAAAACCAAGGCTAG
CATTTTACCC
Found at i:20220947 original size:38 final size:37
Alignment explanation
Indices: 20220896--20220994 Score: 112
Period size: 36 Copynumber: 2.7 Consensus size: 37
20220886 CTCCCCCGGC
* *
20220896 TCATGTGCACTCCCACACCGCACATTACAATATCA-TCA
1 TCATGTGCACTCCCACACCGCACACT-CAACATCACT-A
** * *
20220934 TCATGTGCACTCCCACACTACAC-CTCACCATCACTG
1 TCATGTGCACTCCCACACCGCACACTCAACATCACTA
20220970 TCATGTGCACTCCCACACCGCACAC
1 TCATGTGCACTCCCACACCGCACAC
20220995 GCATGATTAT
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
36 27 0.53
37 3 0.06
38 21 0.41
ACGTcount: A:0.27, C:0.42, G:0.09, T:0.21
Consensus pattern (37 bp):
TCATGTGCACTCCCACACCGCACACTCAACATCACTA
Found at i:20223029 original size:38 final size:38
Alignment explanation
Indices: 20222987--20223059 Score: 101
Period size: 38 Copynumber: 1.9 Consensus size: 38
20222977 GATTTGATTC
* * *
20222987 CTCTACTATTTGCTTTGGCACTAAGTGTGATTTGAACT
1 CTCTACTAGTTGCTTTGACACCAAGTGTGATTTGAACT
* *
20223025 CTCTACTAGTTGCTTTGACACCATGTGTGCTTTGA
1 CTCTACTAGTTGCTTTGACACCAAGTGTGATTTGA
20223060 TTCTCCATCA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 30 1.00
ACGTcount: A:0.19, C:0.21, G:0.19, T:0.41
Consensus pattern (38 bp):
CTCTACTAGTTGCTTTGACACCAAGTGTGATTTGAACT
Found at i:20234934 original size:36 final size:36
Alignment explanation
Indices: 20234857--20234927 Score: 88
Period size: 36 Copynumber: 2.0 Consensus size: 36
20234847 TAACAGTGCA
* * * *
20234857 TGTGCGGTGTGGGAGTGCACCTGATGGTGCCGGTGG
1 TGTGTGGTGTGGGAGTGCACATGATGGTGACGATGG
* *
20234893 TGTGTGGTGTGGGAGTGCACATGCTGGTGATGATG
1 TGTGTGGTGTGGGAGTGCACATGATGGTGACGATG
20234928 TGGTGTGAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.11, C:0.13, G:0.48, T:0.28
Consensus pattern (36 bp):
TGTGTGGTGTGGGAGTGCACATGATGGTGACGATGG
Found at i:20235011 original size:36 final size:36
Alignment explanation
Indices: 20234959--20235054 Score: 156
Period size: 36 Copynumber: 2.7 Consensus size: 36
20234949 GATATTGCCT
* *
20234959 TGTGCGGTGTGGGAGTGCACATGATGATTCCAGCTA
1 TGTGCGATGTGGGAGTGCACATGATGATTCCAACTA
*
20234995 TGTGTGATGTGGGAGTGCACATGATGATTCCAACTA
1 TGTGCGATGTGGGAGTGCACATGATGATTCCAACTA
*
20235031 TGTGCGGTGTGGGAGTGCACATGA
1 TGTGCGATGTGGGAGTGCACATGA
20235055 GCTGATGAGC
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 55 1.00
ACGTcount: A:0.21, C:0.15, G:0.36, T:0.28
Consensus pattern (36 bp):
TGTGCGATGTGGGAGTGCACATGATGATTCCAACTA
Found at i:20253681 original size:40 final size:42
Alignment explanation
Indices: 20253626--20253706 Score: 121
Period size: 40 Copynumber: 2.0 Consensus size: 42
20253616 CTTCTACAAT
* *
20253626 GAATCTATTGATACATTCTT-AGATGTATCGATAC-TTTCAA
1 GAATCTATCGATACATTATTGAGATGTATCGATACATTTCAA
*
20253666 GAATCTATCGATACATTATTGAGATGTATTGATACATTTCA
1 GAATCTATCGATACATTATTGAGATGTATCGATACATTTCA
20253707 TATAAAAAGC
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
40 18 0.50
41 13 0.36
42 5 0.14
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.40
Consensus pattern (42 bp):
GAATCTATCGATACATTATTGAGATGTATCGATACATTTCAA
Found at i:20254287 original size:68 final size:67
Alignment explanation
Indices: 20254204--20254457 Score: 314
Period size: 68 Copynumber: 3.7 Consensus size: 67
20254194 ATGCTTACTT
* *
20254204 ATCTCATA-ACGTATATGGAAAATACATCATATATATAATCTCATGGCATTCATCATGCTTTCTC
1 ATCTCATATA-GTATATGGAATATACATCATATACATAATCTCATGGCATTCATCATGCTTTCT-
20254268 AATC
64 AATC
*
20254272 ATCTCATGTAGTATATGGAATATACATCATATACATAATCTCATGGCATTCATCATGCATATT-T
1 ATCTCATATAGTATATGGAATATACATCATATACATAATCTCATGGCATTCATCATGC-T-TTCT
20254336 AATC
64 AATC
* * * * * * * * *
20254340 ACCTCATATGGTATATGGAATTTACATCATATACACAATCTTATGGTATCCATCATGCATGCTTA
1 ATCTCATATAGTATATGGAATATACATCATATACATAATCTCATGGCATTCATCATGCTTTC-TA
20254405 ATC
65 ATC
* * *
20254408 ATCTCATATAGTATAGGGAATTTACATCATATACATAATCTTATGGCATT
1 ATCTCATATAGTATATGGAATATACATCATATACATAATCTCATGGCATT
20254458 TGTCATACCA
Statistics
Matches: 162, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
66 1 0.01
68 156 0.96
69 3 0.02
70 2 0.01
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.36
Consensus pattern (67 bp):
ATCTCATATAGTATATGGAATATACATCATATACATAATCTCATGGCATTCATCATGCTTTCTAA
TC
Found at i:20255464 original size:21 final size:21
Alignment explanation
Indices: 20255434--20255509 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
20255424 CTAGAAAAAT
*
20255434 TGTATCGATAGATTATGAACA
1 TGTATCGATACATTATGAACA
* * * *
20255455 TGTATTGATACATGA-GCATA
1 TGTATCGATACATTATGAACA
20255475 TGTATCGATACATTATGAACA
1 TGTATCGATACATTATGAACA
20255496 TGTATCGATACATT
1 TGTATCGATACATT
20255510 CGGAACAAAA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 16 0.36
21 29 0.64
ACGTcount: A:0.36, C:0.12, G:0.17, T:0.36
Consensus pattern (21 bp):
TGTATCGATACATTATGAACA
Found at i:20265828 original size:10 final size:10
Alignment explanation
Indices: 20265813--20265837 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
20265803 AAATATCATT
20265813 TTCCACCAGC
1 TTCCACCAGC
20265823 TTCCACCAGC
1 TTCCACCAGC
20265833 TTCCA
1 TTCCA
20265838 GCAACTTCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.48, G:0.08, T:0.24
Consensus pattern (10 bp):
TTCCACCAGC
Found at i:20265956 original size:21 final size:19
Alignment explanation
Indices: 20265915--20265958 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 19
20265905 TTCAATTTCT
*
20265915 TTTCCTTGTTTTCTTCTTA
1 TTTCCTTCTTTTCTTCTTA
20265934 TTTCCTTTCTTTTCTTGCTTA
1 TTTCC-TTCTTTTCTT-CTTA
20265955 TTTC
1 TTTC
20265959 TCCTCCAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 5 0.23
20 9 0.41
21 8 0.36
ACGTcount: A:0.05, C:0.23, G:0.05, T:0.68
Consensus pattern (19 bp):
TTTCCTTCTTTTCTTCTTA
Found at i:20266939 original size:54 final size:54
Alignment explanation
Indices: 20266803--20266954 Score: 252
Period size: 54 Copynumber: 2.8 Consensus size: 54
20266793 ATATTGTCCA
20266803 GCTATGTGCACGATGTGGTGGGATGCACATGAGCTGGGTGAGAT-GGATGTCTG
1 GCTATGTGCACGATGTGGTGGGATGCACATGAGCTGGGTGAGATGGGATGTCTG
* *
20266856 GCTATGTGCACGATGTGGTGGGATACACATGACCTGGGTGAGATGGGATGTCTG
1 GCTATGTGCACGATGTGGTGGGATGCACATGAGCTGGGTGAGATGGGATGTCTG
* * *
20266910 GCTTTGTGCACGATGTGGTAGGATGCACATGAGCTAGGTGAGATG
1 GCTATGTGCACGATGTGGTGGGATGCACATGAGCTGGGTGAGATG
20266955 CACATGATGA
Statistics
Matches: 91, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
53 42 0.46
54 49 0.54
ACGTcount: A:0.20, C:0.14, G:0.39, T:0.26
Consensus pattern (54 bp):
GCTATGTGCACGATGTGGTGGGATGCACATGAGCTGGGTGAGATGGGATGTCTG
Found at i:20268125 original size:54 final size:54
Alignment explanation
Indices: 20268043--20268204 Score: 263
Period size: 54 Copynumber: 3.0 Consensus size: 54
20268033 ATTCGTATAC
*
20268043 CACCCCATGTCACCTAGCTCATGTGCATCCCCCCACATCATGCACATAGCCGGA
1 CACCCCATCTCACCTAGCTCATGTGCATCCCCCCACATCATGCACATAGCCGGA
* *
20268097 CACCCCATCTCAACC-AGCTCATGTGCATCCCCCCACATCGTGCACATAGCCAGA
1 CACCCCATCTC-ACCTAGCTCATGTGCATCCCCCCACATCATGCACATAGCCGGA
* *
20268151 CACCCCATCTCACCTAACTCATGTGCATCCCCCCACATCCTGCACATAGCCGGA
1 CACCCCATCTCACCTAGCTCATGTGCATCCCCCCACATCATGCACATAGCCGGA
20268205 GTCATCGTGT
Statistics
Matches: 100, Mismatches: 6, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
53 3 0.03
54 94 0.94
55 3 0.03
ACGTcount: A:0.25, C:0.44, G:0.13, T:0.18
Consensus pattern (54 bp):
CACCCCATCTCACCTAGCTCATGTGCATCCCCCCACATCATGCACATAGCCGGA
Found at i:20287509 original size:60 final size:60
Alignment explanation
Indices: 20287385--20287681 Score: 418
Period size: 60 Copynumber: 4.9 Consensus size: 60
20287375 ATACATCATC
* * * * *
20287385 ACCTACTCGTGGGAACTACCCATGCCACCAT--ATGAATTGGGACTTCAGGTCCCCCTTT
1 ACCTACTCATGGGAACTACCCATACCACCATACATAAATCGGGGCTTCAGGTCCCCCTTT
*
20287443 ACCTACTCATGGGAACTACCCATACCACCATACATAAATCGGGGCTTCAAGTCCCCCTTT
1 ACCTACTCATGGGAACTACCCATACCACCATACATAAATCGGGGCTTCAGGTCCCCCTTT
* *
20287503 ACCTACTCATGGGAACTACCCACGCAACCACCATACATAAATCGGGGCTTCAGGTCCCCTTTT
1 ACCTACTCATGGGAACTACCCA---TACCACCATACATAAATCGGGGCTTCAGGTCCCCCTTT
* *
20287566 ACCTACTCGTGGGAACTACCCATACCACCATACATAAATCGAGGCTTCAGGTCCCCCTTT
1 ACCTACTCATGGGAACTACCCATACCACCATACATAAATCGGGGCTTCAGGTCCCCCTTT
* * ***
20287626 ACCTACTCATGGGAACTACCCATGCCACCATATATAAATAAAGGCTTCAGGTCCCC
1 ACCTACTCATGGGAACTACCCATACCACCATACATAAATCGGGGCTTCAGGTCCCC
20287682 TTTTTTAAAT
Statistics
Matches: 216, Mismatches: 18, Indels: 8
0.89 0.07 0.03
Matches are distributed among these distances:
58 29 0.13
60 131 0.61
63 56 0.26
ACGTcount: A:0.27, C:0.34, G:0.15, T:0.23
Consensus pattern (60 bp):
ACCTACTCATGGGAACTACCCATACCACCATACATAAATCGGGGCTTCAGGTCCCCCTTT
Found at i:20287581 original size:123 final size:119
Alignment explanation
Indices: 20287385--20287685 Score: 442
Period size: 123 Copynumber: 2.5 Consensus size: 119
20287375 ATACATCATC
* * * * *
20287385 ACCTACTCGTGGGAACTACCCATGCCACCAT-ATGAATTGGGACTTCAGGTCCCCCTTTACCTAC
1 ACCTACTCATGGGAACTACCCATGCCACCATAATAAATAGGGGCTTCAGGTCCCCTTTTACCTAC
*
20287449 TCATGGGAACTACCCATACCACCATACATAAATCGGGGCTTCAAGTCCCCCTTT
66 TCATGGGAACTACCCATACCACCATACATAAATCGAGGCTTCAAGTCCCCCTTT
* *
20287503 ACCTACTCATGGGAACTACCCACGCAACCACCATACATAAATCGGGGCTTCAGGTCCCCTTTTAC
1 ACCTACTCATGGGAACTACCCATG---CCACCATA-ATAAATAGGGGCTTCAGGTCCCCTTTTAC
* *
20287568 CTACTCGTGGGAACTACCCATACCACCATACATAAATCGAGGCTTCAGGTCCCCCTTT
62 CTACTCATGGGAACTACCCATACCACCATACATAAATCGAGGCTTCAAGTCCCCCTTT
**
20287626 ACCTACTCATGGGAACTACCCATGCCACCATATATAAATAAAGGCTTCAGGTCCCCTTTT
1 ACCTACTCATGGGAACTACCCATGCCACCATA-ATAAATAGGGGCTTCAGGTCCCCTTTT
20287686 TTAAATCAAA
Statistics
Matches: 164, Mismatches: 14, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
118 22 0.13
120 32 0.20
121 7 0.04
123 103 0.63
ACGTcount: A:0.27, C:0.34, G:0.15, T:0.24
Consensus pattern (119 bp):
ACCTACTCATGGGAACTACCCATGCCACCATAATAAATAGGGGCTTCAGGTCCCCTTTTACCTAC
TCATGGGAACTACCCATACCACCATACATAAATCGAGGCTTCAAGTCCCCCTTT
Found at i:20291602 original size:11 final size:11
Alignment explanation
Indices: 20291571--20291608 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
20291561 GTCCCCACTC
20291571 TCTTTCTTT-T
1 TCTTTCTTTCT
*
20291581 T-TTTTTTTCT
1 TCTTTCTTTCT
20291591 TCTTTCTTTCT
1 TCTTTCTTTCT
20291602 TCTTTCT
1 TCTTTCT
20291609 CTTGACCGGC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
9 6 0.25
10 3 0.12
11 15 0.62
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (11 bp):
TCTTTCTTTCT
Found at i:20291611 original size:20 final size:20
Alignment explanation
Indices: 20291571--20291611 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
20291561 GTCCCCACTC
* * *
20291571 TCTTTCTTTTTTTTTTTTCT
1 TCTTTCTTTCTTCTTTCTCT
20291591 TCTTTCTTTCTTCTTTCTCT
1 TCTTTCTTTCTTCTTTCTCT
20291611 T
1 T
20291612 GACCGGCCCC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (20 bp):
TCTTTCTTTCTTCTTTCTCT
Found at i:20291746 original size:20 final size:21
Alignment explanation
Indices: 20291708--20291746 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
20291698 TTCTCTCTCA
* *
20291708 TTTCTTCTTCTTTCTTTTTTT
1 TTTCTTCTTCTATCGTTTTTT
20291729 TTTC-TCTTCTATCGTTTT
1 TTTCTTCTTCTATCGTTTT
20291747 CCTTCTCTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.03, C:0.21, G:0.03, T:0.74
Consensus pattern (21 bp):
TTTCTTCTTCTATCGTTTTTT
Found at i:20291747 original size:26 final size:26
Alignment explanation
Indices: 20291687--20291762 Score: 64
Period size: 28 Copynumber: 2.7 Consensus size: 26
20291677 ACTTAACCTT
*
20291687 TTTTCTTTTTTTTCTCTCTCATTTCTTCT
1 TTTTCTTTTTTTT-T-TCTCA-TTCTTCG
20291716 TCTTTCTTTTTTTTTTCTC-TTCTATCG
1 T-TTTCTTTTTTTTTTCTCATTCT-TCG
*
20291743 TTTTCCTTCTCTTTTTTCTC
1 TTTT-CTT-TTTTTTTTCTC
20291763 CACCTGTCGG
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
26 7 0.17
27 6 0.15
28 14 0.34
29 2 0.05
30 12 0.29
ACGTcount: A:0.03, C:0.25, G:0.01, T:0.71
Consensus pattern (26 bp):
TTTTCTTTTTTTTTTCTCATTCTTCG
Found at i:20291758 original size:30 final size:32
Alignment explanation
Indices: 20291690--20291759 Score: 83
Period size: 30 Copynumber: 2.2 Consensus size: 32
20291680 TAACCTTTTT
* *
20291690 TCTTTTTTTTCTCTCTCATTTCTTCTTCTTTC
1 TCTTTTTTTTCTCTCTCATATCTTCTTCCTTC
*
20291722 TTTTTTTTTTCTCT-TC-TATCGTT-TTCCTTC
1 TCTTTTTTTTCTCTCTCATATC-TTCTTCCTTC
20291752 TCTTTTTT
1 TCTTTTTT
20291760 CTCCACCTGT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
30 16 0.48
31 4 0.12
32 13 0.39
ACGTcount: A:0.03, C:0.24, G:0.01, T:0.71
Consensus pattern (32 bp):
TCTTTTTTTTCTCTCTCATATCTTCTTCCTTC
Found at i:20297862 original size:60 final size:60
Alignment explanation
Indices: 20297734--20297957 Score: 337
Period size: 60 Copynumber: 3.8 Consensus size: 60
20297724 AAACATCATC
* * *
20297734 ACCTACTCGTGGGAACTACCCACGCCACCAT--ATGAATCGGGGCTTTAGGTCCCCCTTT
1 ACCTACTCGTGGGAACTACCCACGCCACCATACATAAATCAGGGCTTCAGGTCCCCCTTT
* * *
20297792 ACCTACTCGTGGGAACTACCCACGCCACCATATATAAATCGGGGCTTCAAGTCCCCCTTT
1 ACCTACTCGTGGGAACTACCCACGCCACCATACATAAATCAGGGCTTCAGGTCCCCCTTT
* *
20297852 ACCTATTCGTGGGAACTACCCATGCCACCATACATAAATCAGGGCTTCAGGT-CCCCTTT
1 ACCTACTCGTGGGAACTACCCACGCCACCATACATAAATCAGGGCTTCAGGTCCCCCTTT
* *
20297911 ACCCACTTGTGGGAACTACCCACGCCACCATACATAAATCAGGGCTT
1 ACCTACTCGTGGGAACTACCCACGCCACCATACATAAATCAGGGCTT
20297958 AGAGCATTAA
Statistics
Matches: 152, Mismatches: 12, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
58 31 0.20
59 50 0.33
60 71 0.47
ACGTcount: A:0.25, C:0.34, G:0.18, T:0.23
Consensus pattern (60 bp):
ACCTACTCGTGGGAACTACCCACGCCACCATACATAAATCAGGGCTTCAGGTCCCCCTTT
Found at i:20297948 original size:119 final size:118
Alignment explanation
Indices: 20297734--20297957 Score: 342
Period size: 119 Copynumber: 1.9 Consensus size: 118
20297724 AAACATCATC
* * * *
20297734 ACCTACTCGTGGGAACTACCCACGCCACCATATGAATCGGGGCTTTAGGTCCCCCTTTACCTACT
1 ACCTACTCGTGGGAACTACCCACGCCACCATATAAATCAGGGCTTCAGGTCCCCCTTTACCCACT
* *
20297799 CGTGGGAACTACCCACGCCACCATATATAAATCGGGGCTTCAAGTCCCCCTTT
66 CGTGGGAACTACCCACGCCACCATACATAAATCAGGGCTTCAAGTCCCCCTTT
* *
20297852 ACCTATTCGTGGGAACTACCCATGCCACCATACATAAATCAGGGCTTCAGGT-CCCCTTTACCCA
1 ACCTACTCGTGGGAACTACCCACGCCACCAT--ATAAATCAGGGCTTCAGGTCCCCCTTTACCCA
*
20297916 CTTGTGGGAACTACCCACGCCACCATACATAAATCAGGGCTT
64 CTCGTGGGAACTACCCACGCCACCATACATAAATCAGGGCTT
20297958 AGAGCATTAA
Statistics
Matches: 95, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
118 29 0.31
119 50 0.53
120 16 0.17
ACGTcount: A:0.25, C:0.34, G:0.18, T:0.23
Consensus pattern (118 bp):
ACCTACTCGTGGGAACTACCCACGCCACCATATAAATCAGGGCTTCAGGTCCCCCTTTACCCACT
CGTGGGAACTACCCACGCCACCATACATAAATCAGGGCTTCAAGTCCCCCTTT
Found at i:20301812 original size:2 final size:2
Alignment explanation
Indices: 20301805--20301834 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
20301795 CATTATGTTG
20301805 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
20301835 GTTGTGCATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:20307735 original size:38 final size:39
Alignment explanation
Indices: 20307688--20307790 Score: 138
Period size: 38 Copynumber: 2.6 Consensus size: 39
20307678 ATACTACCCG
*
20307688 TGTGCACGATGTGGGGGGATGCACACGATGGCAT-TAAC-
1 TGTGCACGATGTGGGGGGATGCACACGATGAC-TCTAACA
* **
20307726 TGTGTACGATGTGGGGGGATGCACACGATGACTCTGGCTA
1 TGTGCACGATGTGGGGGGATGCACACGATGACTCTAAC-A
20307766 TGTGCACGATGTGGGGGGATGCACA
1 TGTGCACGATGTGGGGGGATGCACA
20307791 TGAGCTGGTT
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
37 1 0.02
38 32 0.56
40 24 0.42
ACGTcount: A:0.21, C:0.17, G:0.39, T:0.22
Consensus pattern (39 bp):
TGTGCACGATGTGGGGGGATGCACACGATGACTCTAACA
Found at i:20307826 original size:54 final size:54
Alignment explanation
Indices: 20307761--20307865 Score: 192
Period size: 54 Copynumber: 1.9 Consensus size: 54
20307751 CGATGACTCT
* *
20307761 GGCTATGTGCACGATGTGGGGGGATGCACATGAGCTGGTTGAGATGGGGTGTCC
1 GGCTATATGCACGATGTGGGGGGATGCACATGAGCTGGGTGAGATGGGGTGTCC
20307815 GGCTATATGCACGATGTGGGGGGATGCACATGAGCTGGGTGAGATGGGGTG
1 GGCTATATGCACGATGTGGGGGGATGCACATGAGCTGGGTGAGATGGGGTG
20307866 GTATACGAAT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.18, C:0.13, G:0.46, T:0.23
Consensus pattern (54 bp):
GGCTATATGCACGATGTGGGGGGATGCACATGAGCTGGGTGAGATGGGGTGTCC
Found at i:20310332 original size:25 final size:26
Alignment explanation
Indices: 20310289--20310338 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
20310279 TTAATTCTAA
*
20310289 AAAAAAATAAAAACTAATAA-ATAAT
1 AAAAAAATAAAAACAAATAACATAAT
* *
20310314 AAAAAAATTAAAAGAAATAACATAA
1 AAAAAAATAAAAACAAATAACATAA
20310339 AATTAAAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 17 0.81
26 4 0.19
ACGTcount: A:0.76, C:0.04, G:0.02, T:0.18
Consensus pattern (26 bp):
AAAAAAATAAAAACAAATAACATAAT
Found at i:20310333 original size:21 final size:20
Alignment explanation
Indices: 20310307--20310346 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
20310297 AAAAACTAAT
20310307 AAATAATAAAAAAATTAAAAG
1 AAATAA-AAAAAAATTAAAAG
* *
20310328 AAATAACATAAAATTAAAA
1 AAATAAAAAAAAATTAAAA
20310347 TAACTAACTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.75, C:0.03, G:0.03, T:0.20
Consensus pattern (20 bp):
AAATAAAAAAAAATTAAAAG
Found at i:20310342 original size:20 final size:20
Alignment explanation
Indices: 20310317--20310360 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
20310307 AAATAATAAA
20310317 AAAATTAAAAGAAATAACAT
1 AAAATTAAAAGAAATAACAT
* * *
20310337 AAAATTAAAATAACTAACTT
1 AAAATTAAAAGAAATAACAT
20310357 AAAA
1 AAAA
20310361 GTAACCTAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.68, C:0.07, G:0.02, T:0.23
Consensus pattern (20 bp):
AAAATTAAAAGAAATAACAT
Found at i:20310904 original size:14 final size:14
Alignment explanation
Indices: 20310885--20310911 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
20310875 GTTCAAATGA
20310885 TGTGATTCTTAAAG
1 TGTGATTCTTAAAG
20310899 TGTGATTCTTAAA
1 TGTGATTCTTAAA
20310912 CCATTGGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.07, G:0.19, T:0.44
Consensus pattern (14 bp):
TGTGATTCTTAAAG
Found at i:20312282 original size:15 final size:15
Alignment explanation
Indices: 20312262--20312291 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
20312252 AATGACTGTG
20312262 GTGGTGAATTTGAAA
1 GTGGTGAATTTGAAA
*
20312277 GTGGTGACTTTGAAA
1 GTGGTGAATTTGAAA
20312292 TATTTTACTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.03, G:0.33, T:0.33
Consensus pattern (15 bp):
GTGGTGAATTTGAAA
Found at i:20314357 original size:35 final size:35
Alignment explanation
Indices: 20314318--20314390 Score: 101
Period size: 35 Copynumber: 2.1 Consensus size: 35
20314308 GGAGTACGTG
20314318 TGATGATATTGAAATGTGCGTGTAAGGAGTGCACA
1 TGATGATATTGAAATGTGCGTGTAAGGAGTGCACA
*** * *
20314353 TGATGATATTGCCTTGTGCTTGTATGGAGTGCACA
1 TGATGATATTGAAATGTGCGTGTAAGGAGTGCACA
20314388 TGA
1 TGA
20314391 GCTGAGTAAG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.26, C:0.11, G:0.30, T:0.33
Consensus pattern (35 bp):
TGATGATATTGAAATGTGCGTGTAAGGAGTGCACA
Found at i:20314426 original size:2 final size:2
Alignment explanation
Indices: 20314419--20314447 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
20314409 GGTGTACATG
20314419 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
20314448 GNNNNNNNNN
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:20323951 original size:58 final size:57
Alignment explanation
Indices: 20323860--20323970 Score: 161
Period size: 58 Copynumber: 1.9 Consensus size: 57
20323850 TAAGCTTTCA
* *
20323860 ACTTTGCATGCATAACTTTTATTAAATCACATAAAATAAATCTATCATATGCATGCT
1 ACTTTGCATGCATAACTATTATTAAATCACATAAAATAAATCTATCACATGCATGCT
**
20323917 ACTTTGCATTGCATAA-TAATTATTAAATTGCATAAAATAAATCTATCACATGCA
1 ACTTTGCA-TGCATAACT-ATTATTAAATCACATAAAATAAATCTATCACATGCA
20323971 ACCTGCTTTA
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
57 9 0.19
58 39 0.81
ACGTcount: A:0.41, C:0.16, G:0.07, T:0.36
Consensus pattern (57 bp):
ACTTTGCATGCATAACTATTATTAAATCACATAAAATAAATCTATCACATGCATGCT
Found at i:20324354 original size:2 final size:2
Alignment explanation
Indices: 20324347--20324376 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
20324337 ATCAATATGA
20324347 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
20324377 TTTTTTNNNN
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:20324414 original size:2 final size:2
Alignment explanation
Indices: 20324407--20324436 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
20324397 NNNNNNNNNN
20324407 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
20324437 GTTTTTTTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:20328711 original size:18 final size:19
Alignment explanation
Indices: 20328676--20328734 Score: 59
Period size: 18 Copynumber: 3.1 Consensus size: 19
20328666 TTAAGCAAAA
*
20328676 ATAAATATTTATGAATTTT
1 ATAAATATTTATAAATTTT
20328695 -TAAATATTT-TAATATTTT
1 ATAAATATTTATAA-ATTTT
* *
20328713 AATAAATATTTAAAAATATT
1 -ATAAATATTTATAAATTTT
20328733 AT
1 AT
20328735 GTTTTTCTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
17 2 0.06
18 14 0.42
19 2 0.06
20 13 0.39
21 2 0.06
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (19 bp):
ATAAATATTTATAAATTTT
Found at i:20329086 original size:10 final size:11
Alignment explanation
Indices: 20329052--20329098 Score: 71
Period size: 10 Copynumber: 4.5 Consensus size: 11
20329042 CATTTCACTC
20329052 CATTTACATTT
1 CATTTACATTT
*
20329063 CATTTGCATTT
1 CATTTACATTT
20329074 CATTTAC-TTT
1 CATTTACATTT
20329084 CATTTAC-TTT
1 CATTTACATTT
20329094 CATTT
1 CATTT
20329099 TATTTGCATT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
10 18 0.53
11 16 0.47
ACGTcount: A:0.21, C:0.19, G:0.02, T:0.57
Consensus pattern (11 bp):
CATTTACATTT
Found at i:20340162 original size:22 final size:22
Alignment explanation
Indices: 20340134--20340178 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
20340124 ACATGAAGTT
20340134 GAAAACGGTTAGTATAAACCCA
1 GAAAACGGTTAGTATAAACCCA
20340156 GAAAACGGTTAGTATAAACCCA
1 GAAAACGGTTAGTATAAACCCA
20340178 G
1 G
20340179 TGAGTGAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.44, C:0.18, G:0.20, T:0.18
Consensus pattern (22 bp):
GAAAACGGTTAGTATAAACCCA
Found at i:20340688 original size:39 final size:39
Alignment explanation
Indices: 20340608--20340782 Score: 210
Period size: 39 Copynumber: 4.5 Consensus size: 39
20340598 GAGACAAAAA
* ** * *
20340608 AGAAAGTTTTTCGCTATAGCGAGA-T-TAACCCAAAAAC
1 AGAAAGTTTCTCGCTGCAGCGAAATTGTAACCCAGAAAC
* * * *
20340645 AGAAAGTTTCTTGCTGTAGTGAAATTGTAACCCAGAAAT
1 AGAAAGTTTCTCGCTGCAGCGAAATTGTAACCCAGAAAC
* *
20340684 AGAAAGTTTCTTGCTGCAACGAAATTGTAACCCAGAAAC
1 AGAAAGTTTCTCGCTGCAGCGAAATTGTAACCCAGAAAC
* *
20340723 AGAAAGTTTCTCGCTGCAGCGAAATTATAATCCAGAAAC
1 AGAAAGTTTCTCGCTGCAGCGAAATTGTAACCCAGAAAC
*
20340762 AAAAAGTTTCTCGCTGCAGCG
1 AGAAAGTTTCTCGCTGCAGCG
20340783 NNNNNNNNNN
Statistics
Matches: 120, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
37 19 0.16
38 1 0.01
39 100 0.83
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (39 bp):
AGAAAGTTTCTCGCTGCAGCGAAATTGTAACCCAGAAAC
Found at i:20348662 original size:39 final size:39
Alignment explanation
Indices: 20348600--20348704 Score: 122
Period size: 39 Copynumber: 2.7 Consensus size: 39
20348590 AGATAGGAGA
* * *
20348600 CAAAAACAGAAGGTTT-TTCGCTGCAGTGAAATTGTGACC
1 CAAAAACAGAAAGTTTCTT-GCTGCAGCGAAATTGTAACC
* *
20348639 CAAAAACAGAATGTTTCTTGCTGCTGCGAAATTGTAACC
1 CAAAAACAGAAAGTTTCTTGCTGCAGCGAAATTGTAACC
* * *
20348678 CAGAAATAGAAAGTTTCTCGCTGCAGC
1 CAAAAACAGAAAGTTTCTTGCTGCAGC
20348705 AAGAATGAAT
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
39 54 0.96
40 2 0.04
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (39 bp):
CAAAAACAGAAAGTTTCTTGCTGCAGCGAAATTGTAACC
Found at i:20349079 original size:20 final size:20
Alignment explanation
Indices: 20349054--20349097 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
20349044 TATATACCCA
*
20349054 TCATCATCATACA-CACCATC
1 TCATCATCAT-CATCACCAGC
20349074 TCATCATCATCATCACCAGC
1 TCATCATCATCATCACCAGC
20349094 TCAT
1 TCAT
20349098 GCGCACTCCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 2 0.09
20 20 0.91
ACGTcount: A:0.32, C:0.39, G:0.02, T:0.27
Consensus pattern (20 bp):
TCATCATCATCATCACCAGC
Found at i:20349740 original size:2 final size:2
Alignment explanation
Indices: 20349733--20349774 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
20349723 AATGGGGTAA
*
20349733 CT CT CT CT CT CT CT CT CT CT TT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
20349775 AGAATGCCCA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
CT
Found at i:20351682 original size:34 final size:35
Alignment explanation
Indices: 20351635--20351710 Score: 104
Period size: 34 Copynumber: 2.2 Consensus size: 35
20351625 AATTTAAATT
*
20351635 TAAATAA-TCAAAAAC-AATATCTCAAATATCAACA
1 TAAATAACTCAAAAACAAATAT-TCAAATAACAACA
*
20351669 TAAATAACT-AAAAACAAATATTCAAATAACAACT
1 TAAATAACTCAAAAACAAATATTCAAATAACAACA
20351703 TAAATAAC
1 TAAATAAC
20351711 ATCACAAGTT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
34 32 0.84
35 6 0.16
ACGTcount: A:0.61, C:0.16, G:0.00, T:0.24
Consensus pattern (35 bp):
TAAATAACTCAAAAACAAATATTCAAATAACAACA
Found at i:20352354 original size:34 final size:34
Alignment explanation
Indices: 20352316--20352388 Score: 112
Period size: 34 Copynumber: 2.1 Consensus size: 34
20352306 AATTTTAAAT
*
20352316 TTAAATAATCAAAAAC-AATATCTCAAATATCAAC
1 TTAAATAATCAAAAACAAATATC-CAAATAACAAC
*
20352350 TTAAATAATTAAAAACAAATATCCAAATAACAAC
1 TTAAATAATCAAAAACAAATATCCAAATAACAAC
20352384 TTAAA
1 TTAAA
20352389 CAATATTATA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
34 30 0.83
35 6 0.17
ACGTcount: A:0.59, C:0.15, G:0.00, T:0.26
Consensus pattern (34 bp):
TTAAATAATCAAAAACAAATATCCAAATAACAAC
Found at i:20360052 original size:68 final size:68
Alignment explanation
Indices: 20359934--20360144 Score: 237
Period size: 72 Copynumber: 3.0 Consensus size: 68
20359924 CTTTAAGGTG
* * *
20359934 GGCAAGAACTT-TTGTATTATGGTATTATTGGATGGTAGAAAATTATTAGCAGTTGGTTTGTTTA
1 GGCAAGAACTTGTTGTATTATGATATTATTGGATGG-AGAAGATAATTAGCAGTTGGTTTGTTTA
20359998 TGAA
65 TGAA
20360002 GGCAAGAACTTGTTGCT-TTATGATATTATTGGATGGAGAAGATAATTAGCAGTTGGTTTGATTA
1 GGCAAGAACTTGTTG-TATTATGATATTATTGGATGGAGAAGATAATTAGCAGTTGGTTTG-TT-
*
20360066 GGAATGAA
63 --TATGAA
* * * ** * *
20360074 GGCGAGAACTTGTTATGTTACAATATTATTGGATGGGAGAAGATATTTAGCTGTTGGTTTGTTTA
1 GGCAAGAACTTGTTGTATTATGATATTATTGGAT-GGAGAAGATAATTAGCAGTTGGTTTGTTTA
*
20360139 GGAA
65 TGAA
20360143 GG
1 GG
20360145 AACCTCAGTT
Statistics
Matches: 123, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
68 33 0.27
69 29 0.24
70 1 0.01
71 1 0.01
72 35 0.28
73 24 0.20
ACGTcount: A:0.29, C:0.05, G:0.28, T:0.37
Consensus pattern (68 bp):
GGCAAGAACTTGTTGTATTATGATATTATTGGATGGAGAAGATAATTAGCAGTTGGTTTGTTTAT
GAA
Found at i:20360087 original size:72 final size:71
Alignment explanation
Indices: 20359934--20360142 Score: 239
Period size: 68 Copynumber: 2.9 Consensus size: 71
20359924 CTTTAAGGTG
* * *
20359934 GGCAAGAACTT-TTGTATTATGGTATTATTGGATGGTAGAAAATTATTAGCAGTTGGTTTGTT--
1 GGCAAGAACTTGTTGTATTATGATATTATTGGATGG-AGAAGATAATTAGCAGTTGGTTTGTTAG
*
20359996 -TATGAA
65 GAATGAA
20360002 GGCAAGAACTTGTTGCT-TTATGATATTATTGGATGGAGAAGATAATTAGCAGTTGGTTTGATTA
1 GGCAAGAACTTGTTG-TATTATGATATTATTGGATGGAGAAGATAATTAGCAGTTGGTTTG-TTA
20360066 GGAATGAA
64 GGAATGAA
* * * ** * *
20360074 GGCGAGAACTTGTTATGTTACAATATTATTGGATGGGAGAAGATATTTAGCTGTTGGTTTGTTTA
1 GGCAAGAACTTGTTGTATTATGATATTATTGGAT-GGAGAAGATAATTAGCAGTTGGTTTG-TTA
20360139 GGAA
64 GGAA
20360143 GGAACCTCAG
Statistics
Matches: 122, Mismatches: 11, Indels: 11
0.85 0.08 0.08
Matches are distributed among these distances:
68 33 0.27
69 23 0.19
70 1 0.01
71 1 0.01
72 33 0.27
73 31 0.25
ACGTcount: A:0.30, C:0.05, G:0.27, T:0.38
Consensus pattern (71 bp):
GGCAAGAACTTGTTGTATTATGATATTATTGGATGGAGAAGATAATTAGCAGTTGGTTTGTTAGG
AATGAA
Found at i:20371428 original size:49 final size:42
Alignment explanation
Indices: 20371367--20371485 Score: 139
Period size: 42 Copynumber: 2.7 Consensus size: 42
20371357 TAGGATACAA
* *
20371367 ATTTAAATTTAATTTGTTTAAATTTAAATAAGAATTATCTATCTATTAT
1 ATTTAAATTTAATTTGTTTAAATTTAAAT-A-AA-GAT-TA---ATTAC
* *
20371416 ATTTTAATTTAATTTGTTCAAATTTAAATAAAGATTAATTAC
1 ATTTAAATTTAATTTGTTTAAATTTAAATAAAGATTAATTAC
20371458 ATTTAAATTTAATTTGTTTAAATTTAAA
1 ATTTAAATTTAATTTGTTTAAATTTAAA
20371486 ATTAGTATCC
Statistics
Matches: 64, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
42 30 0.47
45 2 0.03
46 2 0.03
47 2 0.03
48 1 0.02
49 27 0.42
ACGTcount: A:0.42, C:0.03, G:0.04, T:0.50
Consensus pattern (42 bp):
ATTTAAATTTAATTTGTTTAAATTTAAATAAAGATTAATTAC
Found at i:20376873 original size:63 final size:63
Alignment explanation
Indices: 20376800--20376959 Score: 207
Period size: 63 Copynumber: 2.6 Consensus size: 63
20376790 CCAAGTTAAA
* *
20376800 GAAGAATCGACATCTCAGGAAAGAAGAATCGATTCTGCAAAAATAAAAAGTTATAGACTTTAT
1 GAAGAATCGACATCTCAGAAAAGAAGAATCGATTCTGCAAAAAGAAAAAGTTATAGACTTTAT
* * * * *
20376863 GAAGAATCGACATCTTAGAAAAGAAGAATCGATTCTTCAGACAGAAAAAGTTTTAGACTTTAT
1 GAAGAATCGACATCTCAGAAAAGAAGAATCGATTCTGCAAAAAGAAAAAGTTATAGACTTTAT
* * **
20376926 GAAGAATTGACAACTCA-ATCA-AAGAATCGATTCT
1 GAAGAATCGACATCTCAGAAAAGAAGAATCGATTCT
20376960 CTATGTGCGA
Statistics
Matches: 85, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
61 13 0.15
62 2 0.02
63 70 0.82
ACGTcount: A:0.44, C:0.14, G:0.17, T:0.25
Consensus pattern (63 bp):
GAAGAATCGACATCTCAGAAAAGAAGAATCGATTCTGCAAAAAGAAAAAGTTATAGACTTTAT
Found at i:20386510 original size:20 final size:20
Alignment explanation
Indices: 20386485--20386560 Score: 125
Period size: 20 Copynumber: 3.8 Consensus size: 20
20386475 AAGGGGGAGT
20386485 AGAATGGGTGCAGGAACTAG
1 AGAATGGGTGCAGGAACTAG
20386505 AGAATGGGTGCAGGAACTAG
1 AGAATGGGTGCAGGAACTAG
* *
20386525 AAAATGGGTGCAGGGACTAG
1 AGAATGGGTGCAGGAACTAG
*
20386545 AGAATGGGTGTAGGAA
1 AGAATGGGTGCAGGAA
20386561 TTAAAAAAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 51 1.00
ACGTcount: A:0.36, C:0.08, G:0.41, T:0.16
Consensus pattern (20 bp):
AGAATGGGTGCAGGAACTAG
Found at i:20390223 original size:21 final size:21
Alignment explanation
Indices: 20390198--20390252 Score: 85
Period size: 21 Copynumber: 2.6 Consensus size: 21
20390188 ATGACGAAAA
20390198 TTGTTTGAATGAT-CTCTGAAC
1 TTGTTTGAATGATCCT-TGAAC
*
20390219 TTGTTTGAGTGATCCTTGAAC
1 TTGTTTGAATGATCCTTGAAC
20390240 TTGTTTGAATGAT
1 TTGTTTGAATGAT
20390253 TTTTAAAGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
21 29 0.94
22 2 0.06
ACGTcount: A:0.22, C:0.11, G:0.22, T:0.45
Consensus pattern (21 bp):
TTGTTTGAATGATCCTTGAAC
Found at i:20390449 original size:21 final size:21
Alignment explanation
Indices: 20390397--20390467 Score: 74
Period size: 21 Copynumber: 3.3 Consensus size: 21
20390387 TTTAAATTAT
* *
20390397 TTTTGAAGTTGTTTGAATGAGT
1 TTTTGAACTTGTTTGAAT-AGA
20390419 TTTTGAACTTGTTTGAATAGA
1 TTTTGAACTTGTTTGAATAGA
*
20390440 TTTT-ATACTTGTTTAAATA-A
1 TTTTGA-ACTTGTTTGAATAGA
20390460 GTTTTGAA
1 -TTTTGAA
20390468 GATCCTAAGT
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
20 2 0.05
21 23 0.53
22 18 0.42
ACGTcount: A:0.28, C:0.03, G:0.18, T:0.51
Consensus pattern (21 bp):
TTTTGAACTTGTTTGAATAGA
Found at i:20390752 original size:21 final size:21
Alignment explanation
Indices: 20390728--20390771 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
20390718 TATCTATCCT
20390728 TAAATGTT-CATCATCTACCGA
1 TAAATGTTCCAT-ATCTACCGA
*
20390749 TAAATGTTCCATATCTATCGA
1 TAAATGTTCCATATCTACCGA
20390770 TA
1 TA
20390772 GTTGTGGTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 18 0.86
22 3 0.14
ACGTcount: A:0.34, C:0.20, G:0.09, T:0.36
Consensus pattern (21 bp):
TAAATGTTCCATATCTACCGA
Found at i:20391284 original size:36 final size:36
Alignment explanation
Indices: 20391239--20391310 Score: 99
Period size: 36 Copynumber: 2.0 Consensus size: 36
20391229 AAAGGTAATG
20391239 TTGAAAGGTTGTGCTTGATCCATAAAAGACATTGTA
1 TTGAAAGGTTGTGCTTGATCCATAAAAGACATTGTA
* * * * *
20391275 TTGAGAGGTTGTGTTTGATCCTTGAAAGGCATTGTA
1 TTGAAAGGTTGTGCTTGATCCATAAAAGACATTGTA
20391311 AAGGTTATGT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.28, C:0.10, G:0.26, T:0.36
Consensus pattern (36 bp):
TTGAAAGGTTGTGCTTGATCCATAAAAGACATTGTA
Found at i:20396119 original size:2 final size:2
Alignment explanation
Indices: 20396112--20396136 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
20396102 GGTTGAAAAT
20396112 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
20396137 TATTGCATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:20398031 original size:27 final size:27
Alignment explanation
Indices: 20397980--20398033 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
20397970 TTATATTATT
* *
20397980 TTTTAAATGTTAATAATTTAAAATTTA
1 TTTTAAATATTAATAACTTAAAATTTA
20398007 TTTTAAATATTAAT-ACTTAATAATTTA
1 TTTTAAATATTAATAACTTAA-AATTTA
20398034 AATATTAATC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 5 0.21
27 19 0.79
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (27 bp):
TTTTAAATATTAATAACTTAAAATTTA
Found at i:20398062 original size:34 final size:32
Alignment explanation
Indices: 20397989--20398054 Score: 80
Period size: 34 Copynumber: 2.0 Consensus size: 32
20397979 TTTTTAAATG
*
20397989 TTAATAATTTAAAATTTATTTTAAATATTAATAC
1 TTAATAATTTAAAATTAATTTT--ATATTAATAC
20398023 TTAATAATTTAAATATTAATCTTT-TATTAATA
1 TTAATAATTTAAA-ATTAAT-TTTATATTAATA
20398055 TTTTAATATT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
33 8 0.28
34 13 0.45
35 5 0.17
36 3 0.10
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (32 bp):
TTAATAATTTAAAATTAATTTTATATTAATAC
Found at i:20398164 original size:22 final size:21
Alignment explanation
Indices: 20398124--20398176 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 21
20398114 TATTTATTTT
20398124 TATTTTATTTTAAAATATTAA
1 TATTTTATTTTAAAATATTAA
20398145 TATTTTATAATTT-AAATATTAA
1 TATTTTAT--TTTAAAATATTAA
* *
20398167 CATTTAATTT
1 TATTTTATTT
20398177 ATAATTTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
20 2 0.07
21 8 0.29
22 15 0.54
23 3 0.11
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.57
Consensus pattern (21 bp):
TATTTTATTTTAAAATATTAA
Found at i:20398216 original size:43 final size:43
Alignment explanation
Indices: 20398082--20398230 Score: 126
Period size: 43 Copynumber: 3.5 Consensus size: 43
20398072 AAAATATTAA
** *
20398082 TATTTT-ATTTATAATTTAGGTGTTATTATGACTATTTATTTT
1 TATTTTAATTTATAATTTAAATGTTATTATGATTATTTATTTT
* * * * ** *
20398124 TATTTTATTTTAAAATATT-AATATT-TTATAATT-TAAATATT
1 TATTTTAATTTATAAT-TTAAATGTTATTATGATTATTTATTTT
* *
20398165 AACATTTAATTTATAATTTAAATGTTATTATGATTATTTATTTT
1 TA-TTTTAATTTATAATTTAAATGTTATTATGATTATTTATTTT
**
20398209 TATTTTAATTTATTTTTTAAAT
1 TATTTTAATTTATAATTTAAAT
20398231 ATTAATAATT
Statistics
Matches: 78, Mismatches: 23, Indels: 11
0.70 0.21 0.10
Matches are distributed among these distances:
41 8 0.10
42 28 0.36
43 34 0.44
44 8 0.10
ACGTcount: A:0.34, C:0.01, G:0.04, T:0.60
Consensus pattern (43 bp):
TATTTTAATTTATAATTTAAATGTTATTATGATTATTTATTTT
Found at i:20398232 original size:85 final size:84
Alignment explanation
Indices: 20398057--20398242 Score: 225
Period size: 85 Copynumber: 2.2 Consensus size: 84
20398047 TATTAATATT
* * **
20398057 TTAATATTAAT--TTATAAAATATTAATATTTTATTTATAATTTAGGTGTTATTATGACTATTTA
1 TTAATATTAATAATT-T-AAATATTAACATTTAATTTATAATTTAAATGTTATTATGACTATTTA
*
20398120 TTTTTATTTTATTTTAAAATA
64 TTTTTATTTTAATTTAAAATA
* *
20398141 TTAATATTTTATAATTTAAATATTAACATTTAATTTATAATTTAAATGTTATTATGATTATTTAT
1 TTAATA-TTAATAATTTAAATATTAACATTTAATTTATAATTTAAATGTTATTATGACTATTTAT
** *
20398206 TTTTATTTTAATTT-ATTTT
65 TTTTATTTTAATTTAAAATA
20398225 TTAAATATTAATAATTTA
1 TT-AATATTAATAATTTA
20398243 TAATTAATTT
Statistics
Matches: 87, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
84 20 0.23
85 64 0.74
86 1 0.01
87 2 0.02
ACGTcount: A:0.38, C:0.01, G:0.03, T:0.58
Consensus pattern (84 bp):
TTAATATTAATAATTTAAATATTAACATTTAATTTATAATTTAAATGTTATTATGACTATTTATT
TTTATTTTAATTTAAAATA
Done.