Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36364294
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2168405 characters in sequence are not A, C, G, or T
File 61 of 91
Found at i:21978812 original size:22 final size:23
Alignment explanation
Indices: 21978769--21978815 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
21978759 TACCAAGTCA
*
21978769 GATAGACGTTGAAGCAAAACCAG
1 GATAAACGTTGAAGCAAAACCAG
*
21978792 GATAAACGTTG-AGGAAAACCAG
1 GATAAACGTTGAAGCAAAACCAG
21978814 GA
1 GA
21978816 GAATCAGGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 12 0.55
23 10 0.45
ACGTcount: A:0.45, C:0.15, G:0.28, T:0.13
Consensus pattern (23 bp):
GATAAACGTTGAAGCAAAACCAG
Found at i:21983588 original size:18 final size:18
Alignment explanation
Indices: 21983567--21983634 Score: 79
Period size: 18 Copynumber: 3.9 Consensus size: 18
21983557 ATGGTGGCAG
*
21983567 TAGGGACAGAGGCAGCAT
1 TAGGAACAGAGGCAGCAT
*
21983585 TAGGAACAGTGGCAG---
1 TAGGAACAGAGGCAGCAT
*
21983600 TAGGGACAGAGGCAGCAT
1 TAGGAACAGAGGCAGCAT
*
21983618 TAGGAACAGTGGCAGCA
1 TAGGAACAGAGGCAGCA
21983635 GCATTATCAA
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
15 13 0.32
18 28 0.68
ACGTcount: A:0.34, C:0.16, G:0.38, T:0.12
Consensus pattern (18 bp):
TAGGAACAGAGGCAGCAT
Found at i:21983602 original size:33 final size:33
Alignment explanation
Indices: 21983560--21983632 Score: 146
Period size: 33 Copynumber: 2.2 Consensus size: 33
21983550 GTTGACAATG
21983560 GTGGCAGTAGGGACAGAGGCAGCATTAGGAACA
1 GTGGCAGTAGGGACAGAGGCAGCATTAGGAACA
21983593 GTGGCAGTAGGGACAGAGGCAGCATTAGGAACA
1 GTGGCAGTAGGGACAGAGGCAGCATTAGGAACA
21983626 GTGGCAG
1 GTGGCAG
21983633 CAGCATTATC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.32, C:0.15, G:0.41, T:0.12
Consensus pattern (33 bp):
GTGGCAGTAGGGACAGAGGCAGCATTAGGAACA
Found at i:21983608 original size:15 final size:15
Alignment explanation
Indices: 21983562--21983614 Score: 61
Period size: 15 Copynumber: 3.3 Consensus size: 15
21983552 TGACAATGGT
21983562 GGCAGTAGGGACAGA
1 GGCAGTAGGGACAGA
* *
21983577 GGCAGCATTAGGAACAGT
1 GGCAG---TAGGGACAGA
21983595 GGCAGTAGGGACAGA
1 GGCAGTAGGGACAGA
21983610 GGCAG
1 GGCAG
21983615 CATTAGGAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
15 18 0.58
18 13 0.42
ACGTcount: A:0.32, C:0.15, G:0.43, T:0.09
Consensus pattern (15 bp):
GGCAGTAGGGACAGA
Found at i:21986739 original size:236 final size:236
Alignment explanation
Indices: 21986322--21986793 Score: 604
Period size: 236 Copynumber: 2.0 Consensus size: 236
21986312 TAGCTTCGAT
* * * * *
21986322 ATCACTAGAATTTCCCTATGTCTGCTGTAAAAAATTATGAAATTCCATATGTGCAAGCCAGGCTG
1 ATCACTAGAATTTCCCCATGTCTACTGCAAAAAATTAAGAAATTCCATATGTGCAAGCCAAGCTG
* * * *
21986387 CTTTAAAATAAAAGCCTGTTTAGACTTGAACATGGCGATGTTCTACAAGAGATAGTACTAGTGGA
66 CTTGAAAATAAAAGCCTGTCTAGACTTGAACATGGCAATGTTCTACAAGAGAGAGTACTAGTGGA
* * * * *
21986452 ATGTGGTCAAAATGTATTCAAGGCATGTGCTGAACAATCACTTCGTTAAATAACAGGTGCCACTC
131 ATATGGTCAAAATGTATTCAAGGCATATGCTGAACAACCACTTCATTAAATAACAGGCGCCACTC
*** *
21986517 CATATTACACAAAGTTTTATCAAGACATTCAGAAAGAAGAC
196 CATATTACACAAAGCACTATAAAGACATTCAGAAAGAAGAC
* * *
21986558 ATCACTAGAATTTCCCCATGTCTACTGCATAAAATTACAG-AATTCCTTATGTGCAAGCCAAGTT
1 ATCACTAGAATTTCCCCATGTCTACTGCAAAAAATTA-AGAAATTCCATATGTGCAAGCCAAGCT
* ** *
21986622 GCTTGAAAATGAAAGCCTGTCTAGACTTGAATGTTGCAATGTTCTACAAGAGAGAGTACTAGTGG
65 GCTTGAAAATAAAAGCCTGTCTAGACTTGAACATGGCAATGTTCTACAAGAGAGAGTACTAGTGG
** * * ** * * *
21986687 CCTATGGTTAGAATGTATTTGAGGCATATGTTGAACAACCGCTTCATTAAATAATAGGCGCCACT
130 AATATGGTCAAAATGTATTCAAGGCATATGCTGAACAACCACTTCATTAAATAACAGGCGCCACT
* *
21986752 CCATTTTACACAAAGCACTGTAAAGACATTCAGAAAGAAGAC
195 CCATATTACACAAAGCACTATAAAGACATTCAGAAAGAAGAC
21986794 CTCTCTTCCA
Statistics
Matches: 199, Mismatches: 36, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
236 198 0.99
237 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.28
Consensus pattern (236 bp):
ATCACTAGAATTTCCCCATGTCTACTGCAAAAAATTAAGAAATTCCATATGTGCAAGCCAAGCTG
CTTGAAAATAAAAGCCTGTCTAGACTTGAACATGGCAATGTTCTACAAGAGAGAGTACTAGTGGA
ATATGGTCAAAATGTATTCAAGGCATATGCTGAACAACCACTTCATTAAATAACAGGCGCCACTC
CATATTACACAAAGCACTATAAAGACATTCAGAAAGAAGAC
Found at i:21991706 original size:18 final size:19
Alignment explanation
Indices: 21991675--21991727 Score: 72
Period size: 19 Copynumber: 2.8 Consensus size: 19
21991665 GAGCGGTGAC
*
21991675 AAATGAAAAGAATATTTTA-
1 AAAT-AAAATAATATTTTAT
21991694 AAATAAAATAATATTTTAT
1 AAATAAAATAATATTTTAT
*
21991713 GAATAAAATAATATT
1 AAATAAAATAATATT
21991728 AAAATATTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
18 13 0.42
19 18 0.58
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.36
Consensus pattern (19 bp):
AAATAAAATAATATTTTAT
Found at i:21993269 original size:36 final size:36
Alignment explanation
Indices: 21993216--21993309 Score: 152
Period size: 36 Copynumber: 2.6 Consensus size: 36
21993206 ATAACCGTGC
* * *
21993216 GTGTGCGGTGTGGGAGTGTACATGGCGGTGATGGTG
1 GTGTGCGATGTGGGAGTGCACATGACGGTGATGGTG
*
21993252 GTGTGCGATGTGAGAGTGCACATGACGGTGATGGTG
1 GTGTGCGATGTGGGAGTGCACATGACGGTGATGGTG
21993288 GTGTGCGATGTGGGAGTGCACA
1 GTGTGCGATGTGGGAGTGCACA
21993310 CTATGTTGAT
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 53 1.00
ACGTcount: A:0.16, C:0.11, G:0.48, T:0.26
Consensus pattern (36 bp):
GTGTGCGATGTGGGAGTGCACATGACGGTGATGGTG
Found at i:21993356 original size:72 final size:72
Alignment explanation
Indices: 21993253--21993498 Score: 200
Period size: 75 Copynumber: 3.3 Consensus size: 72
21993243 GTGATGGTGG
* * * * *
21993253 TGTGCGATGTGAGAGTGCACATGACGGTGATGGTGGTGTGCGATGTGGGAGTGCACACTATGTTG
1 TGTGCGGTGTGGGAGTGCACATGA---TGATGATGATGTGCGATGTGGGAGTGCACACTATGATG
21993318 ATATATGCCA
63 ATATATGCCA
* * * * *
21993328 TGTGGGGTGTGGGAGTGCACATGATGATGAT-ATATGCCATGTGCGGTGTGAGAGGGCAC-ATGA
1 TGTGCGGTGTGGGAGTGCACATGATGATGATGATGTGCGATGTG-GGAGTG-CA---CACTATGA
21993391 TGATATATGCCA
61 TGATATATGCCA
* *
21993403 TGTGTGGTGTGGGAGTGCACATGATGAT-ATTTGCCATGTGCGGTGTGGGAGTG--CAC-ATGAT
1 TGTGCGGTGTGGGAGTGCACATGATGATGA--TG--ATGTGCGATGTGGGAGTGCACACTATGAT
* *
21993464 GGTAT-TAGCTA
62 GATATAT-GCCA
21993475 TGTGCGGTGTGGGAGTGCACATGA
1 TGTGCGGTGTGGGAGTGCACATGA
21993499 GTTGCATTGA
Statistics
Matches: 142, Mismatches: 18, Indels: 25
0.77 0.10 0.14
Matches are distributed among these distances:
71 10 0.07
72 49 0.35
73 1 0.01
74 1 0.01
75 63 0.44
76 4 0.03
78 5 0.04
79 9 0.06
ACGTcount: A:0.21, C:0.12, G:0.38, T:0.28
Consensus pattern (72 bp):
TGTGCGGTGTGGGAGTGCACATGATGATGATGATGTGCGATGTGGGAGTGCACACTATGATGATA
TATGCCA
Found at i:21993398 original size:36 final size:36
Alignment explanation
Indices: 21993289--21993498 Score: 269
Period size: 36 Copynumber: 5.7 Consensus size: 36
21993279 GTGATGGTGG
* *
21993289 TGTGCGATGTGGGAGTGCACACTATGTTGATATATGCCA
1 TGTGCGGTGTGGGAGTG--CAC-ATGATGATATATGCCA
*
21993328 TGTGGGGTGTGGGAGTGCACATGATGATGATATATGCCA
1 TGTGCGGTGTGGGAGTGCAC---ATGATGATATATGCCA
* *
21993367 TGTGCGGTGTGAGAGGGCACATGATGATATATGCCA
1 TGTGCGGTGTGGGAGTGCACATGATGATATATGCCA
* *
21993403 TGTGTGGTGTGGGAGTGCACATGATGATATTTGCCA
1 TGTGCGGTGTGGGAGTGCACATGATGATATATGCCA
* *
21993439 TGTGCGGTGTGGGAGTGCACATGATGGTAT-TAGCTA
1 TGTGCGGTGTGGGAGTGCACATGATGATATAT-GCCA
21993475 TGTGCGGTGTGGGAGTGCACATGA
1 TGTGCGGTGTGGGAGTGCACATGA
21993499 GTTGCATTGA
Statistics
Matches: 154, Mismatches: 14, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
35 1 0.01
36 103 0.67
37 3 0.02
39 47 0.31
ACGTcount: A:0.21, C:0.12, G:0.37, T:0.29
Consensus pattern (36 bp):
TGTGCGGTGTGGGAGTGCACATGATGATATATGCCA
Found at i:21996645 original size:19 final size:17
Alignment explanation
Indices: 21996614--21996657 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
21996604 ATTAATATTT
21996614 AAATATTTTTTATTCATA
1 AAATATTTTTTATTC-TA
21996632 AAATATTATTTTATTCTA
1 AAATATT-TTTTATTCTA
*
21996650 ATATATTT
1 AAATATTT
21996658 CTTTCACTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 1 0.04
18 15 0.62
19 8 0.33
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.57
Consensus pattern (17 bp):
AAATATTTTTTATTCTA
Found at i:21997231 original size:22 final size:22
Alignment explanation
Indices: 21997206--21997275 Score: 81
Period size: 21 Copynumber: 3.3 Consensus size: 22
21997196 TTCAAATCTC
21997206 ACAATTTGTAAATATTTAGTTT
1 ACAATTTGTAAATATTTAGTTT
* * * *
21997228 ACAA-TTGTATATA-ATAATTC
1 ACAATTTGTAAATATTTAGTTT
*
21997248 ACAACTTGTAAATATTTAGTTT
1 ACAATTTGTAAATATTTAGTTT
21997270 ACAATT
1 ACAATT
21997276 GCATATAATA
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
20 8 0.22
21 16 0.43
22 13 0.35
ACGTcount: A:0.40, C:0.09, G:0.07, T:0.44
Consensus pattern (22 bp):
ACAATTTGTAAATATTTAGTTT
Found at i:21997256 original size:21 final size:20
Alignment explanation
Indices: 21997228--21997288 Score: 59
Period size: 21 Copynumber: 3.0 Consensus size: 20
21997218 TATTTAGTTT
21997228 ACAATTGTATATAATAATTC
1 ACAATTGTATATAATAATTC
* * * *
21997248 ACAACTTGTAAATATTTAGTTT
1 ACAA-TTGTATATA-ATAATTC
*
21997270 ACAATTGCATATAATAATT
1 ACAATTGTATATAATAATT
21997289 TAGAATTGAT
Statistics
Matches: 31, Mismatches: 8, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
20 8 0.26
21 15 0.48
22 8 0.26
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.41
Consensus pattern (20 bp):
ACAATTGTATATAATAATTC
Found at i:21997263 original size:42 final size:42
Alignment explanation
Indices: 21997204--21997288 Score: 152
Period size: 42 Copynumber: 2.0 Consensus size: 42
21997194 AGTTCAAATC
* *
21997204 TCACAATTTGTAAATATTTAGTTTACAATTGTATATAATAAT
1 TCACAACTTGTAAATATTTAGTTTACAATTGCATATAATAAT
21997246 TCACAACTTGTAAATATTTAGTTTACAATTGCATATAATAAT
1 TCACAACTTGTAAATATTTAGTTTACAATTGCATATAATAAT
21997288 T
1 T
21997289 TAGAATTGAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.40, C:0.09, G:0.07, T:0.44
Consensus pattern (42 bp):
TCACAACTTGTAAATATTTAGTTTACAATTGCATATAATAAT
Found at i:21999626 original size:3 final size:3
Alignment explanation
Indices: 21999620--21999653 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
21999610 CTACATACAC
21999620 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
21999654 TTATTATTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:21999658 original size:3 final size:3
Alignment explanation
Indices: 21999652--21999677 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
21999642 ATAATAATAA
21999652 TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
21999678 AAATTTAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:22001489 original size:15 final size:15
Alignment explanation
Indices: 22001465--22001510 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
22001455 TATGGGCTTT
22001465 TTATAATTTTATGAA
1 TTATAATTTTATGAA
**
22001480 TTAT-ATTTT-T-CT
1 TTATAATTTTATGAA
22001492 TTATAATTTTATGAA
1 TTATAATTTTATGAA
22001507 TTAT
1 TTAT
22001511 TGATGATCTG
Statistics
Matches: 24, Mismatches: 4, Indels: 6
0.71 0.12 0.18
Matches are distributed among these distances:
12 4 0.17
13 6 0.25
14 6 0.25
15 8 0.33
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (15 bp):
TTATAATTTTATGAA
Found at i:22002143 original size:28 final size:27
Alignment explanation
Indices: 22002112--22002193 Score: 119
Period size: 28 Copynumber: 3.0 Consensus size: 27
22002102 TTTCAGAGCA
22002112 TAGGGGTAAAATAGTAATTTTACCACCC
1 TAGGGGTAAAATAGTAATTTT-CCACCC
*
22002140 TAGGGGTAAAATGGTAATTTTGCCACCC
1 TAGGGGTAAAATAGTAATTTT-CCACCC
* *
22002168 TATGGGCAAAATAGTAATTTTCCACC
1 TAGGGGTAAAATAGTAATTTTCCACC
22002194 ACCAGGACAT
Statistics
Matches: 49, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
27 5 0.10
28 44 0.90
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (27 bp):
TAGGGGTAAAATAGTAATTTTCCACCC
Found at i:22005096 original size:39 final size:41
Alignment explanation
Indices: 22005051--22005130 Score: 101
Period size: 42 Copynumber: 2.0 Consensus size: 41
22005041 GTAAACGTAT
*
22005051 ACGTTTAATACACGTGT-A-ACATGACACGACACGATTAAC
1 ACGTTTAATAAACGTGTAATACATGACACGACACGATTAAC
* * *
22005090 ACGTTTATTAAACGTGTCAATATATGACACGACATGATTAA
1 ACGTTTAATAAACGTGT-AATACATGACACGACACGATTAA
22005131 TAACTCGTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
39 15 0.44
41 1 0.03
42 18 0.53
ACGTcount: A:0.39, C:0.19, G:0.15, T:0.28
Consensus pattern (41 bp):
ACGTTTAATAAACGTGTAATACATGACACGACACGATTAAC
Found at i:22005442 original size:18 final size:18
Alignment explanation
Indices: 22005413--22005458 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
22005403 TGTTACATAT
*
22005413 ACACGTTTAAACACGATA
1 ACACGATTAAACACGATA
*
22005431 ACTCGATTAAACACGATA
1 ACACGATTAAACACGATA
22005449 ACACGATTAA
1 ACACGATTAA
22005459 GTAAACATGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.46, C:0.22, G:0.11, T:0.22
Consensus pattern (18 bp):
ACACGATTAAACACGATA
Found at i:22008865 original size:136 final size:136
Alignment explanation
Indices: 22008617--22008888 Score: 420
Period size: 136 Copynumber: 2.0 Consensus size: 136
22008607 AATTTTGTTC
* * *
22008617 TAAATTTACTTTAATCTATACTTTATTTGTTTAGGTTGGTTTAGTCTTTTTCTACTTTTTATTTT
1 TAAATTTACTTTAATCTATACTTTATTTCTTTACGTTGGTTTAGTCTTTTTCTACTTTTTACTTT
* ** *
22008682 AGGGTTCAATAAATAATTAATTTCTAGAGTCCCTTATCTAAACTCCTCCAAGACACCTGTTTATA
66 AGGCTTCAATAAATAATTAATTTCTAGAGTCCCCCATCTAAACTCCTCCAAGACACCTCTTTATA
22008747 GTAATT
131 GTAATT
* *
22008753 TAAATTTACTTTAATTTATACTTTATTTACTTT-CGTTGGTTTAGTCTTTTTTTACTTTTTACTT
1 TAAATTTACTTTAATCTATACTTTATTT-CTTTACGTTGGTTTAGTCTTTTTCTACTTTTTACTT
* * *
22008817 TAGGCTTCAATGAATAATTAATTTCTCGAGTCCCCCATCTAAATTCCTCCAAGACACCTCTTTAT
65 TAGGCTTCAATAAATAATTAATTTCTAGAGTCCCCCATCTAAACTCCTCCAAGACACCTCTTTAT
22008882 AGTAATT
130 AGTAATT
22008889 ACTACGTCTT
Statistics
Matches: 123, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
136 120 0.98
137 3 0.02
ACGTcount: A:0.26, C:0.17, G:0.09, T:0.48
Consensus pattern (136 bp):
TAAATTTACTTTAATCTATACTTTATTTCTTTACGTTGGTTTAGTCTTTTTCTACTTTTTACTTT
AGGCTTCAATAAATAATTAATTTCTAGAGTCCCCCATCTAAACTCCTCCAAGACACCTCTTTATA
GTAATT
Found at i:22009835 original size:15 final size:16
Alignment explanation
Indices: 22009808--22009838 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
22009798 TGGTTTGAAG
22009808 AATAAAAATAATTATT
1 AATAAAAATAATTATT
22009824 AATAAAAA-AATTATT
1 AATAAAAATAATTATT
22009839 TTGAGAGTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
AATAAAAATAATTATT
Found at i:22010250 original size:15 final size:15
Alignment explanation
Indices: 22010226--22010273 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 15
22010216 ACAAATGAGT
22010226 AAATAGAATAAAAATA
1 AAATA-AATAAAAATA
22010242 AAATAAAT--AAAT-
1 AAATAAATAAAAATA
22010254 AAAT-AATAAAAATA
1 AAATAAATAAAAATA
22010268 ATAATA
1 A-AATA
22010274 TAAATTGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 10
0.73 0.00 0.27
Matches are distributed among these distances:
11 3 0.11
12 4 0.15
13 8 0.30
14 1 0.04
15 6 0.22
16 5 0.19
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.23
Consensus pattern (15 bp):
AAATAAATAAAAATA
Found at i:22010250 original size:20 final size:20
Alignment explanation
Indices: 22010225--22010278 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 20
22010215 AACAAATGAG
22010225 TAAATAGAATAAA-AATAAAA
1 TAAATA-AATAAATAATAAAA
22010245 TAAATAAATAAATAATAAAA
1 TAAATAAATAAATAATAAAA
22010265 -ATAATAATATAAAT
1 TA-AATAA-ATAAAT
22010279 TGAAAGAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.23
20 18 0.58
21 6 0.19
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (20 bp):
TAAATAAATAAATAATAAAA
Found at i:22010278 original size:12 final size:13
Alignment explanation
Indices: 22010232--22010278 Score: 53
Period size: 12 Copynumber: 3.7 Consensus size: 13
22010222 GAGTAAATAG
*
22010232 AATAAAAATAAAAT
1 AATATAAAT-AAAT
22010246 AA-ATAAATAAAT
1 AATATAAATAAAT
*
22010258 AATAAAAAT-AAT
1 AATATAAATAAAT
22010270 AATATAAAT
1 AATATAAAT
22010279 TGAAAGAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
12 17 0.59
13 10 0.34
14 2 0.07
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (13 bp):
AATATAAATAAAT
Found at i:22010758 original size:20 final size:20
Alignment explanation
Indices: 22010735--22010772 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
22010725 TGATAATAAA
22010735 TTTTCTAAG-AAAATAAAATG
1 TTTT-TAAGAAAAATAAAATG
*
22010755 TTTTTTAGAAAAATAAAA
1 TTTTTAAGAAAAATAAAA
22010773 ACAAGCATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.53, C:0.03, G:0.08, T:0.37
Consensus pattern (20 bp):
TTTTTAAGAAAAATAAAATG
Found at i:22015380 original size:16 final size:16
Alignment explanation
Indices: 22015356--22015412 Score: 69
Period size: 16 Copynumber: 3.6 Consensus size: 16
22015346 ATATTGTCGT
*
22015356 TTCTAGGGTTTACTAC
1 TTCTAGGGTTTACCAC
*
22015372 TTCTGGGGTTTACCAC
1 TTCTAGGGTTTACCAC
* * *
22015388 TGCTAGGGCTTACGAC
1 TTCTAGGGTTTACCAC
22015404 TTCTAGGGT
1 TTCTAGGGT
22015413 AATTGATACT
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.16, C:0.21, G:0.26, T:0.37
Consensus pattern (16 bp):
TTCTAGGGTTTACCAC
Found at i:22023446 original size:18 final size:18
Alignment explanation
Indices: 22023425--22023484 Score: 61
Period size: 18 Copynumber: 3.3 Consensus size: 18
22023415 CGCGTTTGAG
22023425 AAAAGGAAAGAAAAGAAGAA
1 AAAAGGAAAGAAAAG-A-AA
*
22023445 AACAAGG-AA-AAAGGAAA
1 AA-AAGGAAAGAAAAGAAA
*
22023462 AAAATGAAAGAAAAGAAA
1 AAAAGGAAAGAAAAGAAA
22023480 AAAAG
1 AAAAG
22023485 AAATTAAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
16 3 0.09
17 6 0.18
18 12 0.36
19 4 0.12
20 4 0.12
21 4 0.12
ACGTcount: A:0.75, C:0.02, G:0.22, T:0.02
Consensus pattern (18 bp):
AAAAGGAAAGAAAAGAAA
Found at i:22023483 original size:28 final size:28
Alignment explanation
Indices: 22023425--22023487 Score: 69
Period size: 26 Copynumber: 2.3 Consensus size: 28
22023415 CGCGTTTGAG
*
22023425 AAAAGGAAAGAAAAGAAGAAAACAAGGA
1 AAAAGGAAAGAAAAGAAGAAAACAAGAA
*
22023453 AAAAGGAAA-AAAATGAA-AGAA-AAGAA
1 AAAAGGAAAGAAAA-GAAGAAAACAAGAA
*
22023479 AAAAAGAAA
1 AAAAGGAAA
22023488 TTAAAATTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
26 12 0.39
27 7 0.23
28 12 0.39
ACGTcount: A:0.76, C:0.02, G:0.21, T:0.02
Consensus pattern (28 bp):
AAAAGGAAAGAAAAGAAGAAAACAAGAA
Found at i:22023487 original size:8 final size:8
Alignment explanation
Indices: 22023431--22023487 Score: 60
Period size: 8 Copynumber: 6.9 Consensus size: 8
22023421 TGAGAAAAGG
22023431 AAAGAAAA
1 AAAGAAAA
*
22023439 GAAGAAAA
1 AAAGAAAA
* *
22023447 CAAGGAAA
1 AAAGAAAA
*
22023455 AAGGAAAA
1 AAAGAAAA
22023463 AAATGAAAGA
1 AAA-GAAA-A
22023473 AAAGAAAA
1 AAAGAAAA
22023481 AAAGAAA
1 AAAGAAA
22023488 TTAAAATTAA
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
8 28 0.70
9 8 0.20
10 4 0.10
ACGTcount: A:0.77, C:0.02, G:0.19, T:0.02
Consensus pattern (8 bp):
AAAGAAAA
Found at i:22024450 original size:31 final size:30
Alignment explanation
Indices: 22024409--22024488 Score: 97
Period size: 31 Copynumber: 2.6 Consensus size: 30
22024399 AATTATTAAT
* * *
22024409 TATAAAAACTTATTTAACTGAAAAATAAATA
1 TATAAGAACTTATTGAACT-AAAAATAAAAA
* *
22024440 TATAAGAACTTATTGGACTTAAAATAAAAA
1 TATAAGAACTTATTGAACTAAAAATAAAAA
22024470 TATAAGAACTTGATTGAAC
1 TATAAGAACTT-ATTGAAC
22024489 GTAATAAAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
30 20 0.48
31 22 0.52
ACGTcount: A:0.53, C:0.07, G:0.09, T:0.31
Consensus pattern (30 bp):
TATAAGAACTTATTGAACTAAAAATAAAAA
Found at i:22025237 original size:30 final size:30
Alignment explanation
Indices: 22025163--22025268 Score: 110
Period size: 30 Copynumber: 3.6 Consensus size: 30
22025153 TTTAAAAAAT
* *
22025163 TTAAATTAATTTTTAT-TCTTTTA--TTATA
1 TTAAATAAATTTTTATAT-TTTTATTTTAAA
* *
22025191 TTCAATTAAGTTTTTATATTTTTATTTTAAA
1 TT-AAATAAATTTTTATATTTTTATTTTAAA
*
22025222 TTAAATAAATTTTTATATTTTTATTTTGAA
1 TTAAATAAATTTTTATATTTTTATTTTAAA
* *
22025252 CTAAATAAACTTTTATA
1 TTAAATAAATTTTTATA
22025269 ATTAATAATT
Statistics
Matches: 65, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
28 2 0.03
29 16 0.25
30 41 0.63
31 6 0.09
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.58
Consensus pattern (30 bp):
TTAAATAAATTTTTATATTTTTATTTTAAA
Found at i:22036721 original size:2 final size:2
Alignment explanation
Indices: 22036697--22036739 Score: 50
Period size: 2 Copynumber: 21.5 Consensus size: 2
22036687 GAGAATCACT
* * * *
22036697 TA TA TA CA TA CA TA TT TA CA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
22036739 T
1 T
22036740 TTAGTTATAC
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:22037080 original size:36 final size:36
Alignment explanation
Indices: 22037033--22037105 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
22037023 TTGAAAGACT
* * *
22037033 GATTGGATTCCTCTTGTTTGGGTCATTGTAGAGGCA
1 GATTGGATTCCTCTTGTCTGAGTCATTGCAGAGGCA
22037069 GATTGGATTCCTCTTGTCTGAGTCATTGCAGAGGCA
1 GATTGGATTCCTCTTGTCTGAGTCATTGCAGAGGCA
22037105 G
1 G
22037106 TATCTTCTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.18, C:0.16, G:0.30, T:0.36
Consensus pattern (36 bp):
GATTGGATTCCTCTTGTCTGAGTCATTGCAGAGGCA
Found at i:22053419 original size:38 final size:38
Alignment explanation
Indices: 22053354--22053459 Score: 176
Period size: 38 Copynumber: 2.8 Consensus size: 38
22053344 TAGCCGGGGT
* * * *
22053354 CATCGTGTGCATCCTCCCATATCGTGCACAATTAATGC
1 CATCGTGTGTATCCCCCCACATTGTGCACAATTAATGC
22053392 CATCGTGTGTATCCCCCCACATTGTGCACAATTAATGC
1 CATCGTGTGTATCCCCCCACATTGTGCACAATTAATGC
22053430 CATCGTGTGTATCCCCCCACATTGTGCACA
1 CATCGTGTGTATCCCCCCACATTGTGCACA
22053460 CAGGCACTTT
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 64 1.00
ACGTcount: A:0.23, C:0.33, G:0.16, T:0.28
Consensus pattern (38 bp):
CATCGTGTGTATCCCCCCACATTGTGCACAATTAATGC
Found at i:22056322 original size:17 final size:17
Alignment explanation
Indices: 22056292--22056324 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
22056282 TTCTTGATAA
22056292 AATAAAACTCCTTATTG
1 AATAAAACTCCTTATTG
22056309 AATAATAACT-CTTATT
1 AATAA-AACTCCTTATT
22056325 TTATTATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.39
Consensus pattern (17 bp):
AATAAAACTCCTTATTG
Found at i:22056531 original size:28 final size:28
Alignment explanation
Indices: 22056500--22056641 Score: 149
Period size: 29 Copynumber: 4.9 Consensus size: 28
22056490 AAATATTTTA
* * *
22056500 TCTTGTCTCAATTGAGACAAATATGTTT
1 TCTTGTCTAAATTAAGACAAACATGTTT
* * *
22056528 TCTTGACTAAATTAAGACAAAAAATATTTT
1 TCTTGTCTAAATTAAGAC-AAACAT-GTTT
* * *
22056558 TCTTGTCTTATATTAAGGCAAACATATTT
1 TCTTGTC-TAAATTAAGACAAACATGTTT
*
22056587 TCTAGTCTAAATTAAGACCAAACATGTTT
1 TCTTGTCTAAATTAAGA-CAAACATGTTT
*
22056616 TCTTGTATAAATTAAGACAAACATGT
1 TCTTGTCTAAATTAAGACAAACATGT
22056642 AAAAGCTGCC
Statistics
Matches: 94, Mismatches: 16, Indels: 8
0.80 0.14 0.07
Matches are distributed among these distances:
28 32 0.34
29 39 0.41
30 14 0.15
31 9 0.10
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.39
Consensus pattern (28 bp):
TCTTGTCTAAATTAAGACAAACATGTTT
Found at i:22056588 original size:59 final size:58
Alignment explanation
Indices: 22056476--22056639 Score: 177
Period size: 59 Copynumber: 2.8 Consensus size: 58
22056466 TCTTGTCTGT
* * * * *
22056476 AATTAAGACAAAAAAAATATTTTATCTTGTCTCAATTGAGACAAATATGTTTTCTTGACTA
1 AATTAAGAC--AAAAAATATTTT-TCTTGTCTTAATTAAGACAAACATATTTTCTAGACTA
* *
22056537 AATTAAGACAAAAAATATTTTTCTTGTCTTATATTAAGGCAAACATATTTTCTAGTCTA
1 AATTAAGACAAAAAATATTTTTCTTGTCTTA-ATTAAGACAAACATATTTTCTAGACTA
* * * * *
22056596 AATTAAGACCAAACAT-GTTTTCTTGTATAAATTAAGACAAACAT
1 AATTAAGACAAAAAATATTTTTCTTGTCTTAATTAAGACAAACAT
22056640 GTAAAAGCTG
Statistics
Matches: 89, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
57 13 0.15
58 20 0.22
59 47 0.53
61 9 0.10
ACGTcount: A:0.41, C:0.12, G:0.09, T:0.37
Consensus pattern (58 bp):
AATTAAGACAAAAAATATTTTTCTTGTCTTAATTAAGACAAACATATTTTCTAGACTA
Found at i:22071818 original size:13 final size:13
Alignment explanation
Indices: 22071800--22071824 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22071790 ATTTTCAAAA
22071800 ATTTTATAAAATT
1 ATTTTATAAAATT
22071813 ATTTTATAAAAT
1 ATTTTATAAAAT
22071825 CTCATTTTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATTTTATAAAATT
Found at i:22074391 original size:21 final size:21
Alignment explanation
Indices: 22074339--22074411 Score: 85
Period size: 21 Copynumber: 3.3 Consensus size: 21
22074329 TGTTAGATGG
22074339 TTTATA-TGTGTATATATATATATA
1 TTTATATTGTGT-TA-A-ATAT-TA
* *
22074363 TATATATTGTGTTAGATATTA
1 TTTATATTGTGTTAAATATTA
22074384 TTTATATTGTGTTAAATATTA
1 TTTATATTGTGTTAAATATTA
22074405 TTTATAT
1 TTTATAT
22074412 GTTAGAAGTT
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
21 28 0.64
22 4 0.09
24 7 0.16
25 5 0.11
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.56
Consensus pattern (21 bp):
TTTATATTGTGTTAAATATTA
Found at i:22074414 original size:18 final size:19
Alignment explanation
Indices: 22074372--22074428 Score: 55
Period size: 21 Copynumber: 2.9 Consensus size: 19
22074362 ATATATATTG
*
22074372 TGTTAGATATTATTTATATT
1 TGTTAAATATTATTTATA-T
22074392 GTGTTAAATATTATTTATA-
1 -TGTTAAATATTATTTATAT
*
22074411 TGTTAGAA-GTTATTTATA
1 TGTTA-AATATTATTTATA
22074429 GATGTTTCAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
18 14 0.42
19 2 0.06
21 17 0.52
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.54
Consensus pattern (19 bp):
TGTTAAATATTATTTATAT
Found at i:22079161 original size:30 final size:29
Alignment explanation
Indices: 22079099--22079161 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
22079089 AAAGCCCAAG
*
22079099 ATGATATTGTGCATACGTTTGGCACCTAA
1 ATGATATTGTGCATACGTTTGGCACATAA
* * *
22079128 ATGATGTTGTGCATATGTGTTGGCACATGA
1 ATGATATTGTGCATACGT-TTGGCACATAA
22079158 ATGA
1 ATGA
22079162 ATGATATAGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 16 0.55
30 13 0.45
ACGTcount: A:0.27, C:0.13, G:0.25, T:0.35
Consensus pattern (29 bp):
ATGATATTGTGCATACGTTTGGCACATAA
Found at i:22079174 original size:34 final size:31
Alignment explanation
Indices: 22079098--22079186 Score: 92
Period size: 30 Copynumber: 2.8 Consensus size: 31
22079088 GAAAGCCCAA
* *
22079098 GATGATATTGTGCATACGTTTGGCACCTAAAT
1 GATGATA-TGTGCATATGTTTGGCACATAAAT
*
22079130 GATG-T-TGTGCATATGTGTTGGCACATGAAT
1 GATGATATGTGCATATGT-TTGGCACATAAAT
*
22079160 GAATGATATAGTGCATTTGTTTGGCAC
1 G-ATGATAT-GTGCATATGTTTGGCAC
22079187 TTAGATGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
29 10 0.21
30 12 0.25
31 4 0.08
32 5 0.10
33 8 0.17
34 9 0.19
ACGTcount: A:0.26, C:0.12, G:0.26, T:0.36
Consensus pattern (31 bp):
GATGATATGTGCATATGTTTGGCACATAAAT
Found at i:22085396 original size:17 final size:17
Alignment explanation
Indices: 22085374--22085407 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
22085364 CTTTAACTAC
22085374 TTTTTTAATTTTTTTTA
1 TTTTTTAATTTTTTTTA
22085391 TTTTTTAATTTTTTTTA
1 TTTTTTAATTTTTTTTA
22085408 CAATTACCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (17 bp):
TTTTTTAATTTTTTTTA
Found at i:22092672 original size:42 final size:42
Alignment explanation
Indices: 22092604--22092728 Score: 187
Period size: 42 Copynumber: 3.0 Consensus size: 42
22092594 TGTTGATATG
* * *
22092604 GACCCGGCTATGTGCGAGTAGAAGTGCACATAAGCCATTGCT
1 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
* * *
22092646 GACCTGGTTATGTGCGAGTGGGAGTGCACATAAGTCGTTGCT
1 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
*
22092688 GACCCGGCTATGTGCGAGTGGGAGTGCGCATAAGCCGTTGC
1 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGC
22092729 ATATGAGATT
Statistics
Matches: 73, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 73 1.00
ACGTcount: A:0.21, C:0.22, G:0.34, T:0.23
Consensus pattern (42 bp):
GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
Found at i:22113616 original size:14 final size:13
Alignment explanation
Indices: 22113599--22113669 Score: 54
Period size: 14 Copynumber: 5.1 Consensus size: 13
22113589 TATTAATTAA
*
22113599 TTATTATTTTTATT
1 TTATTATATTT-TT
22113613 TTATTATATTTTT
1 TTATTATATTTTT
22113626 TTATTATCATATTTT
1 TTATTAT-AT-TTTT
* *
22113641 CTATTCTTATTTCTT
1 TTATT-ATATTT-TT
22113656 ATTATTAT-TTTTT
1 -TTATTATATTTTT
22113669 T
1 T
22113670 CATACTTTAC
Statistics
Matches: 47, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
12 1 0.02
13 11 0.23
14 17 0.36
15 13 0.28
16 5 0.11
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (13 bp):
TTATTATATTTTT
Found at i:22113624 original size:16 final size:17
Alignment explanation
Indices: 22113588--22113664 Score: 61
Period size: 16 Copynumber: 4.5 Consensus size: 17
22113578 TTTTTAGTTA
22113588 TTATTAATTAATTATTATTT
1 TTATT-ATT-ATTA-TATTT
22113608 TTATT-TTATTATATTT
1 TTATTATTATTATATTT
*
22113624 TT-TTATTATCATATTT
1 TTATTATTATTATATTT
* * *
22113640 TCTATTCTTATT-TCTTA
1 T-TATTATTATTATATTT
22113657 TTATTATT
1 TTATTATT
22113665 TTTTTCATAC
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
15 2 0.04
16 24 0.50
17 9 0.19
18 8 0.17
20 5 0.10
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.69
Consensus pattern (17 bp):
TTATTATTATTATATTT
Found at i:22113766 original size:15 final size:14
Alignment explanation
Indices: 22113755--22113818 Score: 64
Period size: 14 Copynumber: 4.6 Consensus size: 14
22113745 ATTTTATATG
22113755 TATATTTTTTATTA
1 TATATTTTTTATTA
*
22113769 TACTA-TTTTTATTT
1 TA-TATTTTTTATTA
22113783 TATATATTTTTA-TA
1 TATAT-TTTTTATTA
22113797 T-T-TTTTTTATTA
1 TATATTTTTTATTA
22113809 TTATATTTTT
1 -TATATTTTT
22113819 CATAAGCAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 13
0.73 0.04 0.23
Matches are distributed among these distances:
11 6 0.15
12 3 0.07
13 4 0.10
14 15 0.37
15 13 0.32
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (14 bp):
TATATTTTTTATTA
Found at i:22113782 original size:21 final size:20
Alignment explanation
Indices: 22113757--22113818 Score: 56
Period size: 23 Copynumber: 3.0 Consensus size: 20
22113747 TTTATATGTA
22113757 TATTTTTTATTATACTATTTT
1 TATTTTTTATTATA-TATTTT
*
22113778 TATTTTATATATTTTTATATTTT
1 TATTTT-T-TA-TTATATATTTT
*
22113801 T-TTTATTATTATAT-TTTT
1 TATTTTTTATTATATATTTT
22113819 CATAAGCAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
18 4 0.11
19 5 0.14
20 2 0.06
21 7 0.20
22 4 0.11
23 9 0.26
24 4 0.11
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (20 bp):
TATTTTTTATTATATATTTT
Found at i:22113800 original size:17 final size:16
Alignment explanation
Indices: 22113755--22113800 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
22113745 ATTTTATATG
22113755 TATATTTTTTA--TTA
1 TATATTTTTTATTTTA
22113769 TACTA-TTTTTATTTTA
1 TA-TATTTTTTATTTTA
22113785 TATATTTTTATATTTT
1 TATATTTTT-TATTTT
22113801 TTTTATTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
14 8 0.30
15 4 0.15
16 9 0.33
17 6 0.22
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (16 bp):
TATATTTTTTATTTTA
Found at i:22113807 original size:17 final size:17
Alignment explanation
Indices: 22113755--22113818 Score: 56
Period size: 17 Copynumber: 3.5 Consensus size: 17
22113745 ATTTTATATG
22113755 TATATTTTTTATTATACTATT
1 TATATTTTTT-TTAT--T-TT
* * *
22113776 TTTATTTTATATATTTT
1 TATATTTTTTTTATTTT
*
22113793 TATATTTTTTTTATTAT
1 TATATTTTTTTTATTTT
22113810 TATATTTTT
1 TATATTTTT
22113819 CATAAGCAAT
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
17 24 0.67
18 1 0.03
20 3 0.08
21 8 0.22
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (17 bp):
TATATTTTTTTTATTTT
Found at i:22115589 original size:13 final size:13
Alignment explanation
Indices: 22115573--22115602 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
22115563 TTTAATTCAG
22115573 TTTTTGTTTATGA
1 TTTTTGTTTATGA
22115586 TTTTTGTTTATGA
1 TTTTTGTTTATGA
22115599 TTTT
1 TTTT
22115603 AGTGTCTACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.13, C:0.00, G:0.13, T:0.73
Consensus pattern (13 bp):
TTTTTGTTTATGA
Found at i:22140010 original size:16 final size:16
Alignment explanation
Indices: 22139989--22140021 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
22139979 AAATTGAGTT
22139989 GGTGCAATTGTATTTA
1 GGTGCAATTGTATTTA
*
22140005 GGTGCAATTGTGTTTA
1 GGTGCAATTGTATTTA
22140021 G
1 G
22140022 TTGTGAAGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.06, G:0.30, T:0.42
Consensus pattern (16 bp):
GGTGCAATTGTATTTA
Found at i:22142134 original size:25 final size:25
Alignment explanation
Indices: 22142100--22142149 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
22142090 CTTTTTTGTT
22142100 TTAAAGACCCATTTACATTCAATGG
1 TTAAAGACCCATTTACATTCAATGG
22142125 TTAAAGACCCATTTACATTCAATGG
1 TTAAAGACCCATTTACATTCAATGG
22142150 CCTTTGCACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.20, G:0.12, T:0.32
Consensus pattern (25 bp):
TTAAAGACCCATTTACATTCAATGG
Found at i:22144335 original size:26 final size:26
Alignment explanation
Indices: 22144279--22144337 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
22144269 GGCCGGCCAT
* *
22144279 AAGGAAAGAACAAGAGAGAAAATAGA
1 AAGGAAAGAACAAAAGAGAAAATACA
* *
22144305 GAGGAAAGGAAGAAAAGAGAAAA-ACA
1 AAGGAAA-GAACAAAAGAGAAAATACA
22144331 AAGGAAA
1 AAGGAAA
22144338 ACTAGAAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
26 14 0.52
27 13 0.48
ACGTcount: A:0.66, C:0.03, G:0.29, T:0.02
Consensus pattern (26 bp):
AAGGAAAGAACAAAAGAGAAAATACA
Found at i:22149091 original size:17 final size:17
Alignment explanation
Indices: 22149069--22149103 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
22149059 TCCCATCAAA
22149069 GAAATGGCCAAAAAAAT
1 GAAATGGCCAAAAAAAT
* *
22149086 GAAATGGGCAAAGAAAT
1 GAAATGGCCAAAAAAAT
22149103 G
1 G
22149104 GGCATGTTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.54, C:0.09, G:0.26, T:0.11
Consensus pattern (17 bp):
GAAATGGCCAAAAAAAT
Found at i:22152607 original size:18 final size:17
Alignment explanation
Indices: 22152565--22152609 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
22152555 TTTCATTCAA
*
22152565 TTTTAATTT-TTTTATT
1 TTTTAATTTATATTATT
22152581 TTTTAATTTATATTATT
1 TTTTAATTTATATTATT
*
22152598 ATTTTTATTTAT
1 -TTTTAATTTAT
22152610 TTTTTTATAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 9 0.36
17 6 0.24
18 10 0.40
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTTAATTTATATTATT
Found at i:22152616 original size:26 final size:26
Alignment explanation
Indices: 22152573--22152623 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
22152563 AATTTTAATT
*
22152573 TTTTTATTTTTTAATTTATATTATTA
1 TTTTTATTTTTTAATTTATACTATTA
*
22152599 TTTTTATTTATTT-TTTTATACTATT
1 TTTTTATTT-TTTAATTTATACTATT
22152624 TACTTATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.75
Consensus pattern (26 bp):
TTTTTATTTTTTAATTTATACTATTA
Found at i:22152623 original size:13 final size:13
Alignment explanation
Indices: 22152570--22152624 Score: 53
Period size: 12 Copynumber: 4.3 Consensus size: 13
22152560 TTCAATTTTA
22152570 ATTTTTTTAT-TT
1 ATTTTTTTATATT
*
22152582 -TTTAATTTATATT
1 ATTT-TTTTATATT
22152595 ATTATTTTTAT-TT
1 ATT-TTTTTATATT
*
22152608 ATTTTTTTATACT
1 ATTTTTTTATATT
22152621 ATTT
1 ATTT
22152625 ACTTATATAT
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
11 3 0.09
12 12 0.34
13 12 0.34
14 7 0.20
15 1 0.03
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.75
Consensus pattern (13 bp):
ATTTTTTTATATT
Found at i:22153069 original size:20 final size:23
Alignment explanation
Indices: 22153030--22153074 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 23
22153020 TATTTAACTA
22153030 TTTATATTTTATGCATTAT-AGT
1 TTTATATTTTATGCATTATAAGT
*
22153052 TTTATA-TTTAT-TATTATAAGT
1 TTTATATTTTATGCATTATAAGT
22153073 TT
1 TT
22153075 AGATAAGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 5 0.24
21 10 0.48
22 6 0.29
ACGTcount: A:0.29, C:0.02, G:0.07, T:0.62
Consensus pattern (23 bp):
TTTATATTTTATGCATTATAAGT
Found at i:22153803 original size:22 final size:22
Alignment explanation
Indices: 22153745--22153796 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
22153735 AATAACCGAG
* *
22153745 AAGAGAAAGAAAAAAGAAAGGA
1 AAGAAAAAGAAAGAAGAAAGGA
**
22153767 GGGAAAAAGAAAGAAGAAAGGA
1 AAGAAAAAGAAAGAAGAAAGGA
22153789 AAGAAAAA
1 AAGAAAAA
22153797 TAGAGAATGA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (22 bp):
AAGAAAAAGAAAGAAGAAAGGA
Found at i:22153989 original size:9 final size:8
Alignment explanation
Indices: 22153962--22154013 Score: 52
Period size: 9 Copynumber: 6.0 Consensus size: 8
22153952 GAGGAAGAGG
22153962 AAGAATAAA
1 AAGAA-AAA
22153971 GAAGAAAAAA
1 -AAG-AAAAA
22153981 AAGAGAAAA
1 AAGA-AAAA
22153990 AAGAAAAA
1 AAGAAAAA
22153998 GAAGAAAAA
1 -AAGAAAAA
22154007 AA-AAAAA
1 AAGAAAAA
22154014 GGTGCTGCCG
Statistics
Matches: 39, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
7 5 0.13
8 7 0.18
9 19 0.49
10 6 0.15
11 2 0.05
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (8 bp):
AAGAAAAA
Found at i:22153995 original size:18 final size:17
Alignment explanation
Indices: 22153962--22154013 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 17
22153952 GAGGAAGAGG
22153962 AAGAATAAAGAAGAAAAAA
1 AAGAA-AAA-AAGAAAAAA
*
22153981 AAGAGAAAAAAGAAAAAG
1 AAGA-AAAAAAGAAAAAA
22153999 AAGAAAAAAA-AAAAA
1 AAGAAAAAAAGAAAAA
22154014 GGTGCTGCCG
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
16 5 0.16
17 6 0.19
18 12 0.39
19 7 0.23
20 1 0.03
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (17 bp):
AAGAAAAAAAGAAAAAA
Found at i:22153998 original size:15 final size:16
Alignment explanation
Indices: 22153975--22154014 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
22153965 AATAAAGAAG
22153975 AAAAAAAAG-AGAAAA
1 AAAAAAAAGAAGAAAA
*
22153990 AAGAAAAAGAAGAAAA
1 AAAAAAAAGAAGAAAA
22154006 AAAAAAAAG
1 AAAAAAAAG
22154015 GTGCTGCCGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 8 0.36
16 14 0.64
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (16 bp):
AAAAAAAAGAAGAAAA
Found at i:22154051 original size:10 final size:10
Alignment explanation
Indices: 22154038--22154077 Score: 53
Period size: 10 Copynumber: 3.8 Consensus size: 10
22154028 AGAAAGAGAG
22154038 AGAAAAAAAA
1 AGAAAAAAAA
22154048 AGAAAAAAGAA
1 AGAAAAAA-AA
22154059 ATGAAAAAAAA
1 A-GAAAAAAAA
*
22154070 ATAAAAAA
1 AGAAAAAA
22154078 TAGTGGGCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
10 14 0.52
11 6 0.22
12 7 0.26
ACGTcount: A:0.85, C:0.00, G:0.10, T:0.05
Consensus pattern (10 bp):
AGAAAAAAAA
Found at i:22154151 original size:23 final size:23
Alignment explanation
Indices: 22154125--22154169 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
22154115 CCATGAGAAG
*
22154125 GGCCCAATATCAACAACAAAGGA
1 GGCCCAATAGCAACAACAAAGGA
* *
22154148 GGCCCAATGGCAACAAGAAAGG
1 GGCCCAATAGCAACAACAAAGG
22154170 GTAAACCCAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.44, C:0.24, G:0.24, T:0.07
Consensus pattern (23 bp):
GGCCCAATAGCAACAACAAAGGA
Found at i:22154635 original size:12 final size:12
Alignment explanation
Indices: 22154618--22154645 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
22154608 GGGATTTGAA
22154618 AAAAAATAAAAT
1 AAAAAATAAAAT
22154630 AAAAAATAAAAT
1 AAAAAATAAAAT
22154642 AAAA
1 AAAA
22154646 TAATTTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (12 bp):
AAAAAATAAAAT
Found at i:22154642 original size:17 final size:16
Alignment explanation
Indices: 22154616--22154648 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
22154606 ATGGGATTTG
22154616 AAAAAAAATAAAATAA
1 AAAAAAAATAAAATAA
22154632 AAAATAAAATAAAATAA
1 AAAA-AAAATAAAATAA
22154649 TTTATTTCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (16 bp):
AAAAAAAATAAAATAA
Found at i:22154981 original size:60 final size:60
Alignment explanation
Indices: 22154885--22155065 Score: 249
Period size: 60 Copynumber: 3.0 Consensus size: 60
22154875 TATTTGATTA
* *
22154885 TAAAGGGGGACTTGAAGTCCCGATTCATAT-TGGGTGGCGTGGGCAGATCCCACGAGTAGG
1 TAAAGGGGGACTTGAAGCCCCGATTTATATAT-GGTGGCGTGGGCAGATCCCACGAGTAGG
* * * *
22154945 TAAAAGGGGACTTGAAGCCCCGATTTATATATGGTGGCATGGGCGGTTCCCACGAGTAGG
1 TAAAGGGGGACTTGAAGCCCCGATTTATATATGGTGGCGTGGGCAGATCCCACGAGTAGG
* * *
22155005 TAAAGGGGGACCTGAAACCCCGATTTATATATGGTGGCGTGGGCA-ATTCCCATGAGTAGG
1 TAAAGGGGGACTTGAAGCCCCGATTTATATATGGTGGCGTGGGCAGA-TCCCACGAGTAGG
22155065 T
1 T
22155066 GATGATGTTT
Statistics
Matches: 106, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
60 105 0.99
61 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.34, T:0.23
Consensus pattern (60 bp):
TAAAGGGGGACTTGAAGCCCCGATTTATATATGGTGGCGTGGGCAGATCCCACGAGTAGG
Found at i:22159136 original size:2 final size:2
Alignment explanation
Indices: 22159131--22159189 Score: 81
Period size: 2 Copynumber: 31.0 Consensus size: 2
22159121 ATATGAAAAC
22159131 TA TA TA TA TA -A TA TA TA TA GTA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA
22159173 -A TA TA TA -A TA TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA
22159190 ATGTATTTGT
Statistics
Matches: 52, Mismatches: 0, Indels: 10
0.84 0.00 0.16
Matches are distributed among these distances:
1 4 0.08
2 46 0.88
3 2 0.04
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.46
Consensus pattern (2 bp):
TA
Found at i:22160767 original size:23 final size:23
Alignment explanation
Indices: 22160740--22160798 Score: 86
Period size: 23 Copynumber: 2.6 Consensus size: 23
22160730 CGCTAGTGGG
*
22160740 AAAAAGAAGAAGAAAGAAGAA-A
1 AAAAAAAAGAAGAAAGAAGAAGA
22160762 AAAAAAAGAGAAGAAAGAAGAAGA
1 AAAAAAA-AGAAGAAAGAAGAAGA
22160786 AAAAAAAA-AAGAA
1 AAAAAAAAGAAGAA
22160799 GGTGTTGCAG
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
22 11 0.32
23 15 0.44
24 8 0.24
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (23 bp):
AAAAAAAAGAAGAAAGAAGAAGA
Found at i:22160782 original size:26 final size:25
Alignment explanation
Indices: 22160740--22160799 Score: 95
Period size: 26 Copynumber: 2.4 Consensus size: 25
22160730 CGCTAGTGGG
22160740 AAAAAGAAGAAGAAAGAAGAAAAAA
1 AAAAAGAAGAAGAAAGAAGAAAAAA
22160765 AAAAGAGAAGAA-AGAAGAAGAAAAAA
1 AAAA-AGAAGAAGA-AAGAAGAAAAAA
22160791 AAAAAGAAG
1 AAAAAGAAG
22160800 GTGTTGCAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
25 10 0.30
26 23 0.70
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (25 bp):
AAAAAGAAGAAGAAAGAAGAAAAAA
Found at i:22160846 original size:28 final size:29
Alignment explanation
Indices: 22160815--22160869 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
22160805 GCAGACCAAG
*
22160815 AAAGAGAGA-GAAAAAAAGAA-AAAAAAGA
1 AAAGAGAAATGAAAAAAA-AATAAAAAAGA
22160843 AAAGAGAAATGAAAAAAAAATAAAAAA
1 AAAGAGAAATGAAAAAAAAATAAAAAA
22160870 TAGTGCGCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 10 0.42
29 14 0.58
ACGTcount: A:0.80, C:0.00, G:0.16, T:0.04
Consensus pattern (29 bp):
AAAGAGAAATGAAAAAAAAATAAAAAAGA
Found at i:22162452 original size:35 final size:34
Alignment explanation
Indices: 22162402--22162605 Score: 152
Period size: 35 Copynumber: 6.1 Consensus size: 34
22162392 AAAAAGTTAG
* *
22162402 TTGTTG-GGTTTTGGTTGATCCCGTGAAAAACCA
1 TTGTTGAGGTTGTGGTTGAGCCCGTGAAAAACCA
** *
22162435 TTGTTGTAGGTTGTGGTTGAGCCTTTGAAAAATCA
1 TTGTTG-AGGTTGTGGTTGAGCCCGTGAAAAACCA
* * *
22162470 CT-TTG-GGTTTTGGTTGAGCTCGTGAAAAACCA
1 TTGTTGAGGTTGTGGTTGAGCCCGTGAAAAACCA
* *** * *
22162502 TTG-TGAAAGGTTGTTGTTGAGCTTTTGAAATATCA
1 TTGTTG--AGGTTGTGGTTGAGCCCGTGAAAAACCA
* *
22162537 CT-TTG-GGTTTTGGTTGAGCCCGTGAAAAACCA
1 TTGTTGAGGTTGTGGTTGAGCCCGTGAAAAACCA
**
22162569 TTG-TGAAGGGTTGTGGTTGAGCCTTTGAAAAACCA
1 TTGTTG-A-GGTTGTGGTTGAGCCCGTGAAAAACCA
22162604 TT
1 TT
22162606 TTGGATTTTA
Statistics
Matches: 130, Mismatches: 30, Indels: 20
0.72 0.17 0.11
Matches are distributed among these distances:
32 48 0.37
33 6 0.05
34 3 0.02
35 73 0.56
ACGTcount: A:0.23, C:0.12, G:0.28, T:0.37
Consensus pattern (34 bp):
TTGTTGAGGTTGTGGTTGAGCCCGTGAAAAACCA
Found at i:22162496 original size:32 final size:32
Alignment explanation
Indices: 22162405--22162633 Score: 142
Period size: 35 Copynumber: 6.9 Consensus size: 32
22162395 AAGTTAGTTG
* *
22162405 TTGGGTTTTGGTTGATCCCGTGAAAAACCATT
1 TTGGGTTTTGGTTGAGCCCGTGAAAAACCACT
* ** *
22162437 GTTGTAGGTTGTGGTTGAGCCTTTGAAAAATCACT
1 -TTG--GGTTTTGGTTGAGCCCGTGAAAAACCACT
*
22162472 TTGGGTTTTGGTTGAGCTCGTGAAAAACCA-T
1 TTGGGTTTTGGTTGAGCCCGTGAAAAACCACT
*** * *
22162503 TGTGAAAGGTTGTT-GTTGAGCTTTTGAAATATCACT
1 T-TG---GGTT-TTGGTTGAGCCCGTGAAAAACCACT
22162539 TTGGGTTTTGGTTGAGCCCGTGAAAAACCA-T
1 TTGGGTTTTGGTTGAGCCCGTGAAAAACCACT
* ** *
22162570 TGTGAAGGGTTGTGGTTGAGCCTTTGAAAAACCATT
1 T-T---GGGTTTTGGTTGAGCCCGTGAAAAACCACT
* * *
22162606 TTGGATTTTAGTTGATCCCG-GTAAAAAC
1 TTGGGTTTTGGTTGAGCCCGTG-AAAAAC
22162634 TATTGTGAAA
Statistics
Matches: 152, Mismatches: 29, Indels: 31
0.72 0.14 0.15
Matches are distributed among these distances:
31 7 0.05
32 62 0.41
33 3 0.02
34 3 0.02
35 71 0.47
36 6 0.04
ACGTcount: A:0.24, C:0.13, G:0.27, T:0.36
Consensus pattern (32 bp):
TTGGGTTTTGGTTGAGCCCGTGAAAAACCACT
Found at i:22162645 original size:134 final size:134
Alignment explanation
Indices: 22162405--22162647 Score: 373
Period size: 134 Copynumber: 1.8 Consensus size: 134
22162395 AAGTTAGTTG
* * *
22162405 TTGGGTTTTGGTTGATCCCGTGAAAAACCATTGTTGTAGGTTGTGGTTGAGCCTTTGAAAAATCA
1 TTGGGTTTTGGTTGAGCCCGTGAAAAACCATTGTTGAAGGTTGTGGTTGAGCCTTTGAAAAACCA
* * *
22162470 CTTTGGGTTTTGGTTGAGCTCGTGAAAAACCATTGTGAAAGGTTGTTGTTGAGCTTTTGAAATAT
66 CTTTGGATTTTAGTTGAGCCCGTGAAAAACCATTGTGAAAGGTTGTTGTTGAGCTTTTGAAATAT
22162535 CACT
131 CACT
22162539 TTGGGTTTTGGTTGAGCCCGTGAAAAACCATTG-TGAAGGGTTGTGGTTGAGCCTTTGAAAAACC
1 TTGGGTTTTGGTTGAGCCCGTGAAAAACCATTGTTGAA-GGTTGTGGTTGAGCCTTTGAAAAACC
* * *
22162603 ATTTTGGATTTTAGTTGATCCCG-GTAAAAACTATTGTGAAAGGTT
65 ACTTTGGATTTTAGTTGAGCCCGTG-AAAAACCATTGTGAAAGGTT
22162648 TTGGCTAAGC
Statistics
Matches: 98, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
133 4 0.04
134 94 0.96
ACGTcount: A:0.24, C:0.12, G:0.27, T:0.37
Consensus pattern (134 bp):
TTGGGTTTTGGTTGAGCCCGTGAAAAACCATTGTTGAAGGTTGTGGTTGAGCCTTTGAAAAACCA
CTTTGGATTTTAGTTGAGCCCGTGAAAAACCATTGTGAAAGGTTGTTGTTGAGCTTTTGAAATAT
CACT
Found at i:22162659 original size:67 final size:67
Alignment explanation
Indices: 22162405--22162647 Score: 337
Period size: 67 Copynumber: 3.6 Consensus size: 67
22162395 AAGTTAGTTG
* *
22162405 TTGGGTTTTGGTTGATCCCGTGAAAAACCATTGTTG-TAGGTTGTGGTTGAGCCTTTGAAAAATC
1 TTGGGTTTTGGTTGAGCCCGTGAAAAACCATTG-TGAAAGGTTGTGGTTGAGCCTTTGAAAAATC
22162469 ACT
65 ACT
* * * *
22162472 TTGGGTTTTGGTTGAGCTCGTGAAAAACCATTGTGAAAGGTTGTTGTTGAGCTTTTGAAATATCA
1 TTGGGTTTTGGTTGAGCCCGTGAAAAACCATTGTGAAAGGTTGTGGTTGAGCCTTTGAAAAATCA
22162537 CT
66 CT
* *
22162539 TTGGGTTTTGGTTGAGCCCGTGAAAAACCATTGTGAAGGGTTGTGGTTGAGCCTTTGAAAAACCA
1 TTGGGTTTTGGTTGAGCCCGTGAAAAACCATTGTGAAAGGTTGTGGTTGAGCCTTTGAAAAATCA
*
22162604 TT
66 CT
* * * *
22162606 TTGGATTTTAGTTGATCCCG-GTAAAAACTATTGTGAAAGGTT
1 TTGGGTTTTGGTTGAGCCCGTG-AAAAACCATTGTGAAAGGTT
22162648 TTGGCTAAGC
Statistics
Matches: 156, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
66 3 0.02
67 153 0.98
ACGTcount: A:0.24, C:0.12, G:0.27, T:0.37
Consensus pattern (67 bp):
TTGGGTTTTGGTTGAGCCCGTGAAAAACCATTGTGAAAGGTTGTGGTTGAGCCTTTGAAAAATCA
CT
Found at i:22163667 original size:60 final size:60
Alignment explanation
Indices: 22163508--22163688 Score: 249
Period size: 60 Copynumber: 3.0 Consensus size: 60
22163498 ATATTTGATT
* * *
22163508 GTAAAGGGGGACCTGAAGCCCCGATTCATAT-TGGGTGGCGTTGGCAGTTCCCACGAGTAG
1 GTAAAGGGGGACCTGAAGCCCCGATTTATATAT-GGTGGCATGGGCAGTTCCCACGAGTAG
** **
22163568 GTAAA-GGGGACCTGAAATCTTGATTTATATATGGTGGCATGGGCAGTTCCCACGAGTAG
1 GTAAAGGGGGACCTGAAGCCCCGATTTATATATGGTGGCATGGGCAGTTCCCACGAGTAG
* * *
22163627 GTAAAGGGGGACTTGAAGCCCCAATTTGTATATGGTGGCATGGGCAGTTCCCACGAGTAG
1 GTAAAGGGGGACCTGAAGCCCCGATTTATATATGGTGGCATGGGCAGTTCCCACGAGTAG
22163687 GT
1 GT
22163689 GATGATGTCT
Statistics
Matches: 105, Mismatches: 14, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
59 50 0.48
60 55 0.52
ACGTcount: A:0.24, C:0.18, G:0.33, T:0.24
Consensus pattern (60 bp):
GTAAAGGGGGACCTGAAGCCCCGATTTATATATGGTGGCATGGGCAGTTCCCACGAGTAG
Found at i:22171062 original size:14 final size:14
Alignment explanation
Indices: 22171043--22171073 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
22171033 TTCGACAGAT
*
22171043 TTCCAACAGAATAA
1 TTCCAACAGAAAAA
22171057 TTCCAACAGAAAAA
1 TTCCAACAGAAAAA
22171071 TTC
1 TTC
22171074 TATTGAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.48, C:0.23, G:0.06, T:0.23
Consensus pattern (14 bp):
TTCCAACAGAAAAA
Found at i:22173561 original size:24 final size:24
Alignment explanation
Indices: 22173512--22173561 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
22173502 TTTAAGGTAT
* * *
22173512 TTACTAATTTTCTTAATTGCTTAA
1 TTACCAATTTTCTTAATTACTAAA
*
22173536 TTACCAATTTTCTTTATTACTAAA
1 TTACCAATTTTCTTAATTACTAAA
22173560 TT
1 TT
22173562 TATATTTAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.30, C:0.14, G:0.02, T:0.54
Consensus pattern (24 bp):
TTACCAATTTTCTTAATTACTAAA
Found at i:22173940 original size:175 final size:173
Alignment explanation
Indices: 22173649--22174009 Score: 555
Period size: 175 Copynumber: 2.1 Consensus size: 173
22173639 TTAGTTATGC
* * *
22173649 CCATGAATCAACATATTCAACAACCAAAATACTAGCATCCATGAACTAACACATTATTCTCAATT
1 CCATGAATCAACATATTCAACAACCAAAATACCAGCATCCATGAACCAACACATTATTCCCAATT
* *
22173714 AAAATACCAGCAACAATGAATTACATATACAACTATAATTAATACAAAATACCAACAATCAA-TC
66 AAAATACCAGCAACAATGAATCACATATACAACTAGAATTAATACAAAATACCAACAATCAACT-
* **
22173778 AATCTAACCA-TGAATCGATGCATTATTTCCAAAATATAAACAACAA
130 AATCCAACCACT-AATCGACACATTA-TTCC-AAATATAAACAACAA
* *
22173824 CCATGAATCAATATATTCAACAGCCAAAATACCAGCATCCATGAACCAACACATTATTCCCAATT
1 CCATGAATCAACATATTCAACAACCAAAATACCAGCATCCATGAACCAACACATTATTCCCAATT
* * *
22173889 AAAATACCAGCAATAATGAATCACATATACAACTAGAATTAATACAAAATACTAGCAATCAACTA
66 AAAATACCAGCAACAATGAATCACATATACAACTAGAATTAATACAAAATACCAACAATCAACTA
22173954 ATCCAACCACTAATCGACACATTATTCCAAATATAAACAACAA
131 ATCCAACCACTAATCGACACATTATTCCAAATATAAACAACAA
22173997 CCATGAATCAACA
1 CCATGAATCAACA
22174010 CTCTGGACAA
Statistics
Matches: 170, Mismatches: 14, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
173 27 0.16
174 4 0.02
175 137 0.81
176 2 0.01
ACGTcount: A:0.48, C:0.24, G:0.05, T:0.23
Consensus pattern (173 bp):
CCATGAATCAACATATTCAACAACCAAAATACCAGCATCCATGAACCAACACATTATTCCCAATT
AAAATACCAGCAACAATGAATCACATATACAACTAGAATTAATACAAAATACCAACAATCAACTA
ATCCAACCACTAATCGACACATTATTCCAAATATAAACAACAA
Found at i:22188309 original size:47 final size:47
Alignment explanation
Indices: 22188233--22188379 Score: 213
Period size: 47 Copynumber: 3.1 Consensus size: 47
22188223 TTTTGCATAT
* * **
22188233 AATTTTACTTAACAAATAACTAAAAATAATTACATCACCCATTTTATA
1 AATTTTACCTAACAAATAAGT-AAAATAATTACATCATGCATTTTATA
* *
22188281 AATTTTACCTAACAAATAAGTAAAATAATTACATTATGTATTTTATA
1 AATTTTACCTAACAAATAAGTAAAATAATTACATCATGCATTTTATA
*
22188328 AATTTTACCTAACAAATAAGTAAATTAAATTACATCATGCATTTTATA
1 AATTTTACCTAACAAATAAGTAAAAT-AATTACATCATGCATTTTATA
22188376 AATT
1 AATT
22188380 CTGCCTAAAT
Statistics
Matches: 89, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
47 47 0.53
48 42 0.47
ACGTcount: A:0.47, C:0.12, G:0.03, T:0.38
Consensus pattern (47 bp):
AATTTTACCTAACAAATAAGTAAAATAATTACATCATGCATTTTATA
Found at i:22188387 original size:48 final size:47
Alignment explanation
Indices: 22188233--22188379 Score: 197
Period size: 48 Copynumber: 3.1 Consensus size: 47
22188223 TTTTGCATAT
* * * **
22188233 AATTTTACTTAACAAATAACTAAAAATAATTACATCACCCATTTTATA
1 AATTTTACCTAACAAATAAGTAAATA-AATTACATCATGCATTTTATA
* *
22188281 AATTTTACCTAACAAATAAGTAAA-ATAATTACATTATGTATTTTATA
1 AATTTTACCTAACAAATAAGTAAATA-AATTACATCATGCATTTTATA
22188328 AATTTTACCTAACAAATAAGTAAATTAAATTACATCATGCATTTTATA
1 AATTTTACCTAACAAATAAGTAAA-TAAATTACATCATGCATTTTATA
22188376 AATT
1 AATT
22188380 CTGCCTAAAT
Statistics
Matches: 89, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
47 43 0.48
48 45 0.51
49 1 0.01
ACGTcount: A:0.47, C:0.12, G:0.03, T:0.38
Consensus pattern (47 bp):
AATTTTACCTAACAAATAAGTAAATAAATTACATCATGCATTTTATA
Found at i:22189499 original size:21 final size:21
Alignment explanation
Indices: 22189473--22189545 Score: 60
Period size: 21 Copynumber: 3.5 Consensus size: 21
22189463 TGATATTTCT
22189473 TTTAAATTTAAAAAAATTAAA
1 TTTAAATTTAAAAAAATTAAA
* ** *
22189494 TTTAAATGT-AATTAATCCT-TA
1 TTTAAATTTAAAAAAAT--TAAA
*
22189515 TTTAAATTTAAACAAATTAAA
1 TTTAAATTTAAAAAAATTAAA
*
22189536 TTTATATTTA
1 TTTAAATTTA
22189546 TATTCTATCT
Statistics
Matches: 39, Mismatches: 9, Indels: 8
0.70 0.16 0.14
Matches are distributed among these distances:
20 6 0.15
21 27 0.69
22 6 0.15
ACGTcount: A:0.49, C:0.04, G:0.01, T:0.45
Consensus pattern (21 bp):
TTTAAATTTAAAAAAATTAAA
Found at i:22193724 original size:21 final size:22
Alignment explanation
Indices: 22193698--22193744 Score: 87
Period size: 21 Copynumber: 2.2 Consensus size: 22
22193688 ACCTTGGCAG
22193698 AGGCATCTAACCGAGT-CGTCA
1 AGGCATCTAACCGAGTCCGTCA
22193719 AGGCATCTAACCGAGTCCGTCA
1 AGGCATCTAACCGAGTCCGTCA
22193741 AGGC
1 AGGC
22193745 TATTAAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 16 0.64
22 9 0.36
ACGTcount: A:0.28, C:0.30, G:0.26, T:0.17
Consensus pattern (22 bp):
AGGCATCTAACCGAGTCCGTCA
Found at i:22195403 original size:28 final size:29
Alignment explanation
Indices: 22195362--22195418 Score: 89
Period size: 28 Copynumber: 2.0 Consensus size: 29
22195352 GATAAGTGTT
*
22195362 GAGTGTGTAAAATTACAATTTTGCCCCTA
1 GAGTGTGTAAAATTACAATTTTACCCCTA
*
22195391 GAGTG-GTAAAATTACCATTTTACCCCTA
1 GAGTGTGTAAAATTACAATTTTACCCCTA
22195419 TGCTTTGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 21 0.81
29 5 0.19
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33
Consensus pattern (29 bp):
GAGTGTGTAAAATTACAATTTTACCCCTA
Found at i:22202985 original size:19 final size:19
Alignment explanation
Indices: 22202961--22202997 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
22202951 CCATTTGACT
22202961 TATTGGAGTATGATTTGAG
1 TATTGGAGTATGATTTGAG
22202980 TATTGGAGTATGATTTGA
1 TATTGGAGTATGATTTGA
22202998 AGTTTAAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.27, C:0.00, G:0.30, T:0.43
Consensus pattern (19 bp):
TATTGGAGTATGATTTGAG
Found at i:22204664 original size:115 final size:117
Alignment explanation
Indices: 22204444--22204676 Score: 380
Period size: 115 Copynumber: 2.0 Consensus size: 117
22204434 GAATTATAAA
* *
22204444 GTGGGCACTGCAGTGACGGGGGTTCCGTGGGCCAGCCTAATTAGAGGGGCACGGTTCCCAATTAT
1 GTGGGCACTGCAGTGACGGGGGTTCCGTGGACCAGCCTAATTAGAGGGGCACGATTCCCAATTAT
22204509 TGAGCTTACCTCGATTGGAGAGGCACGTAGAATAACTCCCGAGGTAGGATTT
66 TGAGCTTACCTCGATTGGAGAGGCACGTAGAATAACTCCCGAGGTAGGATTT
* * *
22204561 GTGGGCACT-CAGTGAC-GGGGTTTCGTGGATCGGCCTAATTAGAGGGGCACGATTCCCAATTAT
1 GTGGGCACTGCAGTGACGGGGGTTCCGTGGACCAGCCTAATTAGAGGGGCACGATTCCCAATTAT
* * *
22204624 TGAGCTTACCTCGATTGGAGAGGCGCGTAGGATAACTCCCGATGTAGGATTT
66 TGAGCTTACCTCGATTGGAGAGGCACGTAGAATAACTCCCGAGGTAGGATTT
22204676 G
1 G
22204677 AGTACACTTC
Statistics
Matches: 108, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
115 92 0.85
116 7 0.06
117 9 0.08
ACGTcount: A:0.22, C:0.21, G:0.33, T:0.24
Consensus pattern (117 bp):
GTGGGCACTGCAGTGACGGGGGTTCCGTGGACCAGCCTAATTAGAGGGGCACGATTCCCAATTAT
TGAGCTTACCTCGATTGGAGAGGCACGTAGAATAACTCCCGAGGTAGGATTT
Found at i:22215388 original size:22 final size:22
Alignment explanation
Indices: 22215363--22215406 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
22215353 TTTTAAACCA
22215363 CTTTAAAACCAAAAACTCTTAT
1 CTTTAAAACCAAAAACTCTTAT
*
22215385 CTTTAAAACCAAAAGCTCTTAT
1 CTTTAAAACCAAAAACTCTTAT
22215407 ACGAATCGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.23, G:0.02, T:0.32
Consensus pattern (22 bp):
CTTTAAAACCAAAAACTCTTAT
Found at i:22217751 original size:28 final size:27
Alignment explanation
Indices: 22217707--22217759 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 27
22217697 TGTCCTGGTG
22217707 GTGGAAAATTACGATTTTACCCCTAGA
1 GTGGAAAATTACGATTTTACCCCTAGA
22217734 GTGGCAAAATTATC-ATTTTACCCCTA
1 GTGG-AAAATTA-CGATTTTACCCCTA
22217760 TGCTCCGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
27 4 0.17
28 19 0.79
29 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32
Consensus pattern (27 bp):
GTGGAAAATTACGATTTTACCCCTAGA
Found at i:22218375 original size:15 final size:16
Alignment explanation
Indices: 22218355--22218384 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
22218345 TTTATTTTTA
22218355 AAAAATAAA-TAAGCT
1 AAAAATAAATTAAGCT
22218370 AAAAATAAATTAAGC
1 AAAAATAAATTAAGC
22218385 CACACAGGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.67, C:0.07, G:0.07, T:0.20
Consensus pattern (16 bp):
AAAAATAAATTAAGCT
Found at i:22222072 original size:37 final size:37
Alignment explanation
Indices: 22222031--22222141 Score: 194
Period size: 37 Copynumber: 3.1 Consensus size: 37
22222021 CGTAGACGAC
22222031 CTTTATCCATCTTTACAATGATTTAATTTTGTTTATA
1 CTTTATCCATCTTTACAATGATTTAATTTTGTTTATA
22222068 CTTTATCCATCTTTACAATGATTTAATTTTG-TT-TA
1 CTTTATCCATCTTTACAATGATTTAATTTTGTTTATA
22222103 --TTATCCATCTTTACAATGATTTAATTTTGTTTATA
1 CTTTATCCATCTTTACAATGATTTAATTTTGTTTATA
22222138 CTTT
1 CTTT
22222142 CTCTGGGTGT
Statistics
Matches: 70, Mismatches: 0, Indels: 8
0.90 0.00 0.10
Matches are distributed among these distances:
33 29 0.41
34 2 0.03
35 4 0.06
36 2 0.03
37 33 0.47
ACGTcount: A:0.26, C:0.14, G:0.05, T:0.55
Consensus pattern (37 bp):
CTTTATCCATCTTTACAATGATTTAATTTTGTTTATA
Found at i:22222112 original size:33 final size:33
Alignment explanation
Indices: 22222033--22222136 Score: 172
Period size: 33 Copynumber: 3.0 Consensus size: 33
22222023 TAGACGACCT
22222033 TTATCCATCTTTACAATGATTTAATTTTGTTTATA
1 TTATCCATCTTTACAATGATTTAATTTTG-TT-TA
22222068 CTTTATCCATCTTTACAATGATTTAATTTTGTTTA
1 --TTATCCATCTTTACAATGATTTAATTTTGTTTA
22222103 TTATCCATCTTTACAATGATTTAATTTTGTTTA
1 TTATCCATCTTTACAATGATTTAATTTTGTTTA
22222136 T
1 T
22222137 ACTTTCTCTG
Statistics
Matches: 67, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
33 34 0.51
35 2 0.03
36 2 0.03
37 29 0.43
ACGTcount: A:0.27, C:0.12, G:0.06, T:0.55
Consensus pattern (33 bp):
TTATCCATCTTTACAATGATTTAATTTTGTTTA
Found at i:22227473 original size:23 final size:23
Alignment explanation
Indices: 22227382--22227484 Score: 84
Period size: 23 Copynumber: 4.4 Consensus size: 23
22227372 AGTGAGAGGT
* *
22227382 TGTGTCTATTGTTTTTCAACATA
1 TGTGTCTATTGTATTTCAACAGA
22227405 TGTGTC--TTGTTAACTTTCAACAGA
1 TGTGTCTATTG-T-A-TTTCAACAGA
** * **
22227429 TGTGTCTATACTTTTTTTACAGA
1 TGTGTCTATTGTATTTCAACAGA
22227452 TGTGTCTATTGTATTTCAACAGA
1 TGTGTCTATTGTATTTCAACAGA
* *
22227475 CGTATCTATT
1 TGTGTCTATT
22227485 AAACAACTTC
Statistics
Matches: 61, Mismatches: 14, Indels: 10
0.72 0.16 0.12
Matches are distributed among these distances:
21 3 0.05
22 1 0.02
23 40 0.66
24 15 0.25
25 1 0.02
26 1 0.02
ACGTcount: A:0.23, C:0.15, G:0.15, T:0.48
Consensus pattern (23 bp):
TGTGTCTATTGTATTTCAACAGA
Found at i:22238408 original size:28 final size:28
Alignment explanation
Indices: 22238345--22238408 Score: 101
Period size: 28 Copynumber: 2.3 Consensus size: 28
22238335 GCAAGTGGAA
*
22238345 GAGAATAAGTGAGCAGCAGAGTAAGGTT
1 GAGAATAGGTGAGCAGCAGAGTAAGGTT
**
22238373 GAGAATAGGTGAGTGGCAGAGTAAGGTT
1 GAGAATAGGTGAGCAGCAGAGTAAGGTT
22238401 GAGAATAG
1 GAGAATAG
22238409 AGCAGAGAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.38, C:0.05, G:0.39, T:0.19
Consensus pattern (28 bp):
GAGAATAGGTGAGCAGCAGAGTAAGGTT
Found at i:22238925 original size:34 final size:34
Alignment explanation
Indices: 22238852--22238926 Score: 98
Period size: 34 Copynumber: 2.2 Consensus size: 34
22238842 AAGATAAGTT
* **
22238852 AGAAAAGGTAAAAGGGAGAAACACTTGTATTTCA
1 AGAAAAGGTAAAAGGAAGAAACACTTGTACATCA
*
22238886 GGAAAAGGTAAGAA-GAAGAAACACTTGTACATCA
1 AGAAAAGGTAA-AAGGAAGAAACACTTGTACATCA
22238920 AGAAAAG
1 AGAAAAG
22238927 ATTAAGAGGA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
34 33 0.94
35 2 0.06
ACGTcount: A:0.51, C:0.09, G:0.24, T:0.16
Consensus pattern (34 bp):
AGAAAAGGTAAAAGGAAGAAACACTTGTACATCA
Found at i:22240521 original size:3 final size:3
Alignment explanation
Indices: 22240515--22240546 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
22240505 TGGATTATTA
22240515 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
22240547 CTTCTTCTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:22240551 original size:3 final size:3
Alignment explanation
Indices: 22240545--22240579 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
22240535 GTTGTTGTTG
22240545 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
22240580 ATTGTTAGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:22241013 original size:2 final size:2
Alignment explanation
Indices: 22241006--22241034 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
22240996 TTTCTCTATT
22241006 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
22241035 AAAGATGCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:22257006 original size:32 final size:32
Alignment explanation
Indices: 22256959--22257023 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
22256949 GCACATCAAC
*
22256959 ATCCCATGTGAAAGATGACGTAGCACTGACTA
1 ATCCCATGTGAAAGATGACGCAGCACTGACTA
* * * *
22256991 ATCCCTTGTGGAAGATGATGCAGCATTGACTA
1 ATCCCATGTGAAAGATGACGCAGCACTGACTA
22257023 A
1 A
22257024 CTTCTATTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (32 bp):
ATCCCATGTGAAAGATGACGCAGCACTGACTA
Found at i:22261345 original size:30 final size:29
Alignment explanation
Indices: 22261296--22261352 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 29
22261286 ATTCCTTGAA
*
22261296 TTTTTGTAACCACGTTCATGTCACATTTT
1 TTTTTATAACCACGTTCATGTCACATTTT
*
22261325 TTTTTATAACTCATGTTCATGTCACATT
1 TTTTTATAAC-CACGTTCATGTCACATT
22261353 GATTTAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 9 0.36
30 16 0.64
ACGTcount: A:0.23, C:0.19, G:0.09, T:0.49
Consensus pattern (29 bp):
TTTTTATAACCACGTTCATGTCACATTTT
Found at i:22262521 original size:41 final size:41
Alignment explanation
Indices: 22262464--22262640 Score: 221
Period size: 41 Copynumber: 4.3 Consensus size: 41
22262454 TCCATTTATG
** * ** *
22262464 TACATAAACCTTAAAACAATGGGGTCTTACTCATTGTAATA
1 TACATAAACCTTAAAACAATTAGATCTTACTCATCATAACA
*
22262505 TACATAAACCTTAAAACAATTAGATCTTACTCATCGTAACA
1 TACATAAACCTTAAAACAATTAGATCTTACTCATCATAACA
22262546 TACATAAACCTTAAAACAATTAGATCTTAC-CAATCATAACA
1 TACATAAACCTTAAAACAATTAGATCTTACTC-ATCATAACA
* * * * *
22262587 TACATAAACCTTAAAACAATTGGGTTTTACCCATCATAATA
1 TACATAAACCTTAAAACAATTAGATCTTACTCATCATAACA
*
22262628 TTCATAAACCTTA
1 TACATAAACCTTA
22262641 CATACATCAT
Statistics
Matches: 123, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
40 1 0.01
41 121 0.98
42 1 0.01
ACGTcount: A:0.43, C:0.20, G:0.06, T:0.31
Consensus pattern (41 bp):
TACATAAACCTTAAAACAATTAGATCTTACTCATCATAACA
Found at i:22265949 original size:2 final size:2
Alignment explanation
Indices: 22265944--22265992 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
22265934 ACACACACAC
22265944 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22265986 AT AT AT A
1 AT AT AT A
22265993 CATACATACA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:22266741 original size:72 final size:72
Alignment explanation
Indices: 22266620--22266888 Score: 378
Period size: 72 Copynumber: 3.7 Consensus size: 72
22266610 AAATCCTTGC
* * * *
22266620 AGCTAGGAATCAATCTCTTCTCTTCAAAAGATCGATTTTTCTCAACACAAAATGCTTCCTTTTGC
1 AGCTAAGAATCAATCTCTTCTCTTCAAAAGATTGATTCTTCTCAACACAAAATGCTTCTTTTTGC
22266685 TTTTGGA
66 TTTTGGA
* * * * * *
22266692 AGCTAAGAATCGATCTTTTCTCTACTAAAGATTGATTCTTCTTAGCACAAAATGCTTCTTTTTGC
1 AGCTAAGAATCAATCTCTTCTCTTCAAAAGATTGATTCTTCTCAACACAAAATGCTTCTTTTTGC
22266757 TTTTGGA
66 TTTTGGA
* * * * *
22266764 AGCTAAGAATCAATCTCTTCTCTTCTAAAGATTGATTTTTGTCAACACTAAATGTTTCTTTTTGC
1 AGCTAAGAATCAATCTCTTCTCTTCAAAAGATTGATTCTTCTCAACACAAAATGCTTCTTTTTGC
22266829 TTTTGGA
66 TTTTGGA
*
22266836 AACTGAA-AATCAATCTCTTCTCTTCAAAAGATTGATTCTTCTCAACACAAAAT
1 AGCT-AAGAATCAATCTCTTCTCTTCAAAAGATTGATTCTTCTCAACACAAAAT
22266889 TGATCTATTT
Statistics
Matches: 172, Mismatches: 24, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
72 170 0.99
73 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.12, T:0.39
Consensus pattern (72 bp):
AGCTAAGAATCAATCTCTTCTCTTCAAAAGATTGATTCTTCTCAACACAAAATGCTTCTTTTTGC
TTTTGGA
Found at i:22279430 original size:25 final size:25
Alignment explanation
Indices: 22279402--22279502 Score: 76
Period size: 28 Copynumber: 3.7 Consensus size: 25
22279392 CACCTAAAAA
22279402 AAATATATAATAATAATAAATAAAT
1 AAATATATAATAATAATAAATAAAT
* *
22279427 AAATAAATTTAAATTATAATAAAATAAACT
1 AAAT--ATAT-AATAATAAT-AAATAAA-T
* * *
22279457 AAAATATAAAATAATATAAAAATATAAA
1 -AAATATATAATAATA-ATAAATA-AAT
*
22279485 AAATATATAAAAATAATA
1 AAATATATAATAATAATA
22279503 TATATATATA
Statistics
Matches: 58, Mismatches: 10, Indels: 15
0.70 0.12 0.18
Matches are distributed among these distances:
25 4 0.07
26 2 0.03
27 16 0.28
28 19 0.33
29 12 0.21
30 1 0.02
31 4 0.07
ACGTcount: A:0.69, C:0.01, G:0.00, T:0.30
Consensus pattern (25 bp):
AAATATATAATAATAATAAATAAAT
Found at i:22279472 original size:20 final size:18
Alignment explanation
Indices: 22279396--22279500 Score: 67
Period size: 18 Copynumber: 5.8 Consensus size: 18
22279386 TGTAGACACC
* *
22279396 TAAAAAAAATATATAATAA
1 TAAATAAAATATA-AAAAA
*
22279415 T-AAT-AAATA-AATAAA
1 TAAATAAAATATAAAAAA
*
22279430 TAAATTTAAATTATAATAAAA
1 TAAA--TAAAATATAA-AAAA
22279451 TAAACTAAAATATAAAATAA
1 TAAA-TAAAATATAAAA-AA
*
22279471 TATA-AAAATATAAAAAA
1 TAAATAAAATATAAAAAA
*
22279488 TATATAAAA-ATAA
1 TAAATAAAATATAA
22279501 TATATATATA
Statistics
Matches: 70, Mismatches: 8, Indels: 18
0.73 0.08 0.19
Matches are distributed among these distances:
15 4 0.06
16 3 0.04
17 15 0.21
18 18 0.26
19 7 0.10
20 16 0.23
21 7 0.10
ACGTcount: A:0.70, C:0.01, G:0.00, T:0.29
Consensus pattern (18 bp):
TAAATAAAATATAAAAAA
Found at i:22279500 original size:17 final size:18
Alignment explanation
Indices: 22279401--22279510 Score: 77
Period size: 17 Copynumber: 6.1 Consensus size: 18
22279391 ACACCTAAAA
*
22279401 AAAATATATAATAATA-AT
1 AAAATATA-AAAAATATAT
*
22279419 AAATAAATAAATAAAT-T-T
1 AAA-ATATAAA-AAATATAT
* *
22279437 AAATTATAATAAAATAAACT
1 AAAATATAA-AAAATATA-T
22279457 AAAATATAAAATAATATA-
1 AAAATATAAAA-AATATAT
22279475 AAAATATAAAAAATATAT
1 AAAATATAAAAAATATAT
* *
22279493 AAAA-ATAATATATATAT
1 AAAATATAAAAAATATAT
22279510 A
1 A
22279511 TATAAAGGGG
Statistics
Matches: 74, Mismatches: 9, Indels: 19
0.73 0.09 0.19
Matches are distributed among these distances:
17 26 0.35
18 25 0.34
19 9 0.12
20 14 0.19
ACGTcount: A:0.68, C:0.01, G:0.00, T:0.31
Consensus pattern (18 bp):
AAAATATAAAAAATATAT
Found at i:22280395 original size:26 final size:25
Alignment explanation
Indices: 22280362--22280432 Score: 81
Period size: 26 Copynumber: 2.7 Consensus size: 25
22280352 ATAAAAAAAT
*
22280362 AATAAAAAAT-ATATATAAAATATAAA
1 AATAAAAAATAATA-AT-AAATAGAAA
*
22280388 AATTAAAAGATAATAATAAATAGAAA
1 AA-TAAAAAATAATAATAAATAGAAA
22280414 AATAAATAAATAATAATAA
1 AATAAA-AAATAATAATAA
22280433 TAAATAATAT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
25 4 0.10
26 23 0.59
27 9 0.23
28 3 0.08
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (25 bp):
AATAAAAAATAATAATAAATAGAAA
Found at i:22280793 original size:7 final size:7
Alignment explanation
Indices: 22280777--22280814 Score: 53
Period size: 7 Copynumber: 5.6 Consensus size: 7
22280767 TAAAGTATAT
22280777 ATAA-AA
1 ATAATAA
22280783 ATAATAA
1 ATAATAA
22280790 ATAA-ATA
1 ATAATA-A
22280797 ATAATAA
1 ATAATAA
22280804 ATAATAA
1 ATAATAA
22280811 ATAA
1 ATAA
22280815 ATAACCAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
6 5 0.17
7 23 0.79
8 1 0.03
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (7 bp):
ATAATAA
Found at i:22280797 original size:17 final size:17
Alignment explanation
Indices: 22280762--22280815 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
22280752 TAAATAACCA
*
22280762 AAAAATAAAGT-ATATAT
1 AAAAATAAA-TAATAAAT
22280779 AAAAAT-AATAAATAAAT
1 AAAAATAAAT-AATAAAT
*
22280796 AATAATAAATAATAAAT
1 AAAAATAAATAATAAAT
22280813 AAA
1 AAA
22280816 TAACCAAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
15 1 0.03
16 2 0.06
17 25 0.81
18 3 0.10
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (17 bp):
AAAAATAAATAATAAAT
Found at i:22280807 original size:21 final size:20
Alignment explanation
Indices: 22280777--22280818 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 20
22280767 TAAAGTATAT
22280777 ATAAAAATAATAAATAAATA
1 ATAAAAATAATAAATAAATA
22280797 ATAATAAATAATAAATAAATA
1 ATAA-AAATAATAAATAAATA
22280818 A
1 A
22280819 CCAAAATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (20 bp):
ATAAAAATAATAAATAAATA
Found at i:22290881 original size:62 final size:62
Alignment explanation
Indices: 22290709--22290882 Score: 321
Period size: 62 Copynumber: 2.8 Consensus size: 62
22290699 AAAGAATTTG
*
22290709 AATCGAACCTGTTGTGAGATAGGTCGAGCCTAGATTAAGTCTAGGAACTTTAATTTTGTTTA
1 AATCGAACCTGTTGTGAGATAGGTCGAGCCTAGATTAAGTCTAGGAATTTTAATTTTGTTTA
* *
22290771 AATCGAACCTGTTGTAAGATAGGTCGAGCCTAGATTAAGTCTAAGAATTTTAATTTTGTTTA
1 AATCGAACCTGTTGTGAGATAGGTCGAGCCTAGATTAAGTCTAGGAATTTTAATTTTGTTTA
22290833 AATCGAACCTGTTGTGAGATAGGTCGAGCCTAGATTAAGTCTAGGAATTT
1 AATCGAACCTGTTGTGAGATAGGTCGAGCCTAGATTAAGTCTAGGAATTT
22290883 NNNNNNNNNN
Statistics
Matches: 107, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
62 107 1.00
ACGTcount: A:0.30, C:0.13, G:0.22, T:0.34
Consensus pattern (62 bp):
AATCGAACCTGTTGTGAGATAGGTCGAGCCTAGATTAAGTCTAGGAATTTTAATTTTGTTTA
Found at i:22292619 original size:2 final size:2
Alignment explanation
Indices: 22292612--22292646 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
22292602 NNNNNNNNNN
22292612 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
22292647 AATGGAACAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:22292832 original size:16 final size:15
Alignment explanation
Indices: 22292807--22292836 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
22292797 ATTTTTGTTT
22292807 AAAAAATAAATAATA
1 AAAAAATAAATAATA
22292822 AAAATAATAAATAAT
1 AAAA-AATAAATAAT
22292837 CCAAAAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (15 bp):
AAAAAATAAATAATA
Found at i:22302516 original size:29 final size:29
Alignment explanation
Indices: 22302480--22302582 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 29
22302470 CGAGGAAATA
*
22302480 TACGTGAAAAGGTATAAGAGAATAAACTG
1 TACGTGAAAAGGTATAAGAGAAGAAACTG
***
22302509 TACGTGAACAA-GTATAAGAGAAGATGTTG
1 TACGTGAA-AAGGTATAAGAGAAGAAACTG
* * *
22302538 TACATGAATAGGTATAAGAGAAGAAAGTG
1 TACGTGAAAAGGTATAAGAGAAGAAACTG
* *
22302567 TAAGTGAATAGGTATA
1 TACGTGAAAAGGTATA
22302583 CAAGAATAAG
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 1 0.02
29 58 0.95
30 2 0.03
ACGTcount: A:0.46, C:0.05, G:0.26, T:0.23
Consensus pattern (29 bp):
TACGTGAAAAGGTATAAGAGAAGAAACTG
Found at i:22303584 original size:14 final size:13
Alignment explanation
Indices: 22303562--22303633 Score: 67
Period size: 14 Copynumber: 5.2 Consensus size: 13
22303552 TAACTCTTAC
22303562 TTTAATATTAATA
1 TTTAATATTAATA
22303575 TTTAAATATTAATA
1 TTT-AATATTAATA
*
22303589 TTT--TATTTATAA
1 TTTAATATTAAT-A
22303601 TTTAATATTAAATA
1 TTTAATATT-AATA
22303615 TTTTAAAATATTAATA
1 -TTT--AATATTAATA
22303631 TTT
1 TTT
22303634 TATTAAAAAT
Statistics
Matches: 49, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
11 6 0.12
12 4 0.08
13 3 0.06
14 18 0.37
15 8 0.16
16 4 0.08
17 6 0.12
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TTTAATATTAATA
Found at i:22303595 original size:25 final size:26
Alignment explanation
Indices: 22303567--22303619 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
22303557 CTTACTTTAA
22303567 TATTAAT-ATTTAAATATT-AATATTT
1 TATTAATAATTT-AATATTAAATATTT
*
22303592 TATTTATAATTTAATATTAAATATTT
1 TATTAATAATTTAATATTAAATATTT
22303618 TA
1 TA
22303620 AAATATTAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
25 12 0.48
26 13 0.52
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (26 bp):
TATTAATAATTTAATATTAAATATTT
Found at i:22303974 original size:18 final size:18
Alignment explanation
Indices: 22303938--22303973 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
22303928 TCTCTACATC
22303938 TCTTTTACTCTTTCTTTT
1 TCTTTTACTCTTTCTTTT
*
22303956 TCTTTTTCTC-TTCTTTT
1 TCTTTTACTCTTTCTTTT
22303973 T
1 T
22303974 TGTTCTTGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.03, C:0.22, G:0.00, T:0.75
Consensus pattern (18 bp):
TCTTTTACTCTTTCTTTT
Found at i:22304356 original size:21 final size:21
Alignment explanation
Indices: 22304318--22304358 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
22304308 TGTTCTTCAT
*
22304318 TTTTCTATTATATAAATTTTA
1 TTTTCTATCATATAAATTTTA
* *
22304339 TTTTCTATCATTTTAATTTT
1 TTTTCTATCATATAAATTTT
22304359 TAAAAATTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.27, C:0.07, G:0.00, T:0.66
Consensus pattern (21 bp):
TTTTCTATCATATAAATTTTA
Found at i:22308966 original size:2 final size:2
Alignment explanation
Indices: 22308959--22308986 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
22308949 GCTCAGATTG
22308959 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
22308987 AATATCTCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:22310754 original size:19 final size:19
Alignment explanation
Indices: 22310730--22310768 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
22310720 CTTTCCATTG
22310730 AGTGGACCTTGCAATGGGT
1 AGTGGACCTTGCAATGGGT
22310749 AGTGGACCTTGCAATGGGT
1 AGTGGACCTTGCAATGGGT
22310768 A
1 A
22310769 TCAGTAAGCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.23, C:0.15, G:0.36, T:0.26
Consensus pattern (19 bp):
AGTGGACCTTGCAATGGGT
Done.