Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36364294
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2168405 characters in sequence are not A, C, G, or T
File 72 of 91
Found at i:26078400 original size:45 final size:45
Alignment explanation
Indices: 26078349--26078455 Score: 135
Period size: 50 Copynumber: 2.3 Consensus size: 45
26078339 CAAAAACATG
*
26078349 TTACACGCCATGTACAAAAATATGT-AACACGACATGGTTAGGTTA
1 TTACACGCCATGTACAAAAACATGTGAA-ACGACATGGTTAGGTTA
26078394 TTACACGTCATGTCATGTACAAAAACATGTGAAACGACATGGTTAGGTTA
1 TTACACG-C----CATGTACAAAAACATGTGAAACGACATGGTTAGGTTA
*
26078444 TTACATGCCATG
1 TTACACGCCATG
26078456 GTTAGGTTGT
Statistics
Matches: 54, Mismatches: 2, Indels: 12
0.79 0.03 0.18
Matches are distributed among these distances:
45 11 0.20
46 1 0.02
49 1 0.02
50 39 0.72
51 2 0.04
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.28
Consensus pattern (45 bp):
TTACACGCCATGTACAAAAACATGTGAAACGACATGGTTAGGTTA
Found at i:26078455 original size:21 final size:21
Alignment explanation
Indices: 26078431--26078476 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
26078421 TGTGAAACGA
*
26078431 CATGGTTAGGTTATTACATGC
1 CATGGTTAGGTTATTACACGC
*
26078452 CATGGTTAGGTTGTTACACGC
1 CATGGTTAGGTTATTACACGC
26078473 CATG
1 CATG
26078477 TACAAAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.22, C:0.17, G:0.26, T:0.35
Consensus pattern (21 bp):
CATGGTTAGGTTATTACACGC
Found at i:26078565 original size:45 final size:45
Alignment explanation
Indices: 26078452--26078584 Score: 149
Period size: 45 Copynumber: 3.0 Consensus size: 45
26078442 TATTACATGC
* * **
26078452 CATGGTTAGGTTGTTACACGCCATGTACAAAAAAATATAACTTGT
1 CATGGTTAGGTTGTTACACGTCATGTACAAAAAAATATGACACGT
* * *
26078497 TATGGTTAGATTGTTACACGTCATGTACAAAAATATATGACACGT
1 CATGGTTAGGTTGTTACACGTCATGTACAAAAAAATATGACACGT
* * ** * *
26078542 CATGGTTAGGTTGTTATATGTCATACACAAAAACATGTGACAC
1 CATGGTTAGGTTGTTACACGTCATGTACAAAAAAATATGACAC
26078585 TACACGTTAT
Statistics
Matches: 73, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 73 1.00
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (45 bp):
CATGGTTAGGTTGTTACACGTCATGTACAAAAAAATATGACACGT
Found at i:26078608 original size:29 final size:28
Alignment explanation
Indices: 26078568--26078636 Score: 83
Period size: 24 Copynumber: 2.6 Consensus size: 28
26078558 TATGTCATAC
* *
26078568 ACAAAAACATGTGACACTACACGTTATAT
1 ACAAAAACATGTGACA-TACACGTCAAAT
26078597 ACAAAAACATGT----TACACGTCAAAT
1 ACAAAAACATGTGACATACACGTCAAAT
26078621 ACAAAAACATGTGACA
1 ACAAAAACATGTGACA
26078637 AACATGGTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
24 22 0.65
29 12 0.35
ACGTcount: A:0.49, C:0.20, G:0.10, T:0.20
Consensus pattern (28 bp):
ACAAAAACATGTGACATACACGTCAAAT
Found at i:26078677 original size:12 final size:12
Alignment explanation
Indices: 26078660--26078714 Score: 67
Period size: 12 Copynumber: 4.7 Consensus size: 12
26078650 TGTTATACGT
26078660 CATGTACAAAAA
1 CATGTACAAAAA
26078672 CATGTACAAAAA
1 CATGTACAAAAA
* ***
26078684 TATGTAC-ATGT
1 CATGTACAAAAA
26078695 CATGTACAAAAA
1 CATGTACAAAAA
26078707 CATGTACA
1 CATGTACA
26078715 TGTTATGTAC
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
11 7 0.21
12 27 0.79
ACGTcount: A:0.49, C:0.16, G:0.11, T:0.24
Consensus pattern (12 bp):
CATGTACAAAAA
Found at i:26078706 original size:24 final size:23
Alignment explanation
Indices: 26078672--26078753 Score: 119
Period size: 23 Copynumber: 3.5 Consensus size: 23
26078662 TGTACAAAAA
*
26078672 CATGTACAAAAATATGTACATGT
1 CATGTACAAAAACATGTACATGT
26078695 CATGTACAAAAACATGTACATGT
1 CATGTACAAAAACATGTACATGT
* * *
26078718 TATGTACAAAAACACGTGACACGT
1 CATGTACAAAAACATGT-ACATGT
26078742 CATGTACAAAAA
1 CATGTACAAAAA
26078754 TACGTGACAC
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
23 37 0.70
24 16 0.30
ACGTcount: A:0.45, C:0.17, G:0.13, T:0.24
Consensus pattern (23 bp):
CATGTACAAAAACATGTACATGT
Found at i:26078758 original size:24 final size:23
Alignment explanation
Indices: 26078672--26078769 Score: 106
Period size: 23 Copynumber: 4.2 Consensus size: 23
26078662 TGTACAAAAA
* * *
26078672 CATGTACAAAAATATGTACATGT
1 CATGTACAAAAACACGTACACGT
* *
26078695 CATGTACAAAAACATGTACATGT
1 CATGTACAAAAACACGTACACGT
*
26078718 TATGTACAAAAACACGTGACACGT
1 CATGTACAAAAACACGT-ACACGT
* *
26078742 CATGTACAAAAATACGTGACACGC
1 CATGTACAAAAACACGT-ACACGT
26078766 CATG
1 CATG
26078770 ATTAGGTTGT
Statistics
Matches: 67, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
23 37 0.55
24 30 0.45
ACGTcount: A:0.42, C:0.19, G:0.15, T:0.23
Consensus pattern (23 bp):
CATGTACAAAAACACGTACACGT
Found at i:26078812 original size:32 final size:32
Alignment explanation
Indices: 26078776--26078859 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 32
26078766 CATGATTAGG
26078776 TTGTTACACGTTATATTGAAAAAAAAATATTA
1 TTGTTACACGTTATATTGAAAAAAAAATATTA
* *
26078808 TTGTTATACGCTATATTG---AAAAAATATTA
1 TTGTTACACGTTATATTGAAAAAAAAATATTA
* * *
26078837 TTATTACACGTCATATTCAAAAA
1 TTGTTACACGTTATATTGAAAAA
26078860 TATTTTGTTA
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
29 24 0.57
32 18 0.43
ACGTcount: A:0.44, C:0.10, G:0.08, T:0.38
Consensus pattern (32 bp):
TTGTTACACGTTATATTGAAAAAAAAATATTA
Found at i:26078870 original size:27 final size:29
Alignment explanation
Indices: 26078776--26078872 Score: 101
Period size: 29 Copynumber: 3.3 Consensus size: 29
26078766 CATGATTAGG
*
26078776 TTGTTACACGTTATATTGAAAAAAAAATATTA
1 TTGTTACACGCTATATTG---AAAAAATATTA
*
26078808 TTGTTATACGCTATATTGAAAAAATATTA
1 TTGTTACACGCTATATTGAAAAAATATTA
* *
26078837 TTATTACACG-TCATATT-CAAAAATATT-
1 TTGTTACACGCT-ATATTGAAAAAATATTA
26078864 TTGTTACAC
1 TTGTTACAC
26078873 TTTAAAACCT
Statistics
Matches: 58, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
27 8 0.14
28 10 0.17
29 24 0.41
32 16 0.28
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.40
Consensus pattern (29 bp):
TTGTTACACGCTATATTGAAAAAATATTA
Found at i:26078901 original size:25 final size:26
Alignment explanation
Indices: 26078856--26078912 Score: 66
Period size: 25 Copynumber: 2.2 Consensus size: 26
26078846 GTCATATTCA
26078856 AAAATATTTTGTTACACTTTA-AAACC
1 AAAATATTTTGTTA-ACTTTACAAACC
26078882 TAAAATATTGTTGTT-A-TTTACAAACC
1 -AAAATATT-TTGTTAACTTTACAAACC
26078908 AAAAT
1 AAAAT
26078913 TTCAAATATT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
25 9 0.32
26 6 0.21
27 8 0.29
28 5 0.18
ACGTcount: A:0.44, C:0.12, G:0.05, T:0.39
Consensus pattern (26 bp):
AAAATATTTTGTTAACTTTACAAACC
Found at i:26086780 original size:20 final size:20
Alignment explanation
Indices: 26086755--26086800 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
26086745 CTTCTAAACC
26086755 TCAAATCATACTCCAATAAG
1 TCAAATCATACTCCAATAAG
*
26086775 TCAAATTATACTCCAATAAG
1 TCAAATCATACTCCAATAAG
26086795 TCAAAT
1 TCAAAT
26086801 GGGTTCAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.46, C:0.22, G:0.04, T:0.28
Consensus pattern (20 bp):
TCAAATCATACTCCAATAAG
Found at i:26091776 original size:16 final size:15
Alignment explanation
Indices: 26091746--26091789 Score: 61
Period size: 16 Copynumber: 2.9 Consensus size: 15
26091736 AAAAATTAAC
*
26091746 AAATTATTAATATTT
1 AAATTATAAATATTT
*
26091761 TAATTATAATATATTT
1 AAATTATAA-ATATTT
26091777 AAATTATAAATAT
1 AAATTATAAATAT
26091790 AATATTAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 11 0.44
16 14 0.56
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
AAATTATAAATATTT
Found at i:26091790 original size:22 final size:21
Alignment explanation
Indices: 26091713--26091794 Score: 58
Period size: 22 Copynumber: 3.7 Consensus size: 21
26091703 AAACTTAAGT
26091713 TTATCAAATTAATAT-TTTAAA
1 TTAT-AAATTAATATATTTAAA
* * *
26091734 TTAAAAATTAACAAATTATTAATA
1 TTATAAATTAATATA-T-TTAA-A
* *
26091758 TTTTAATTATAATATATTTAAA
1 TTATAAAT-TAATATATTTAAA
26091780 TTATAAATATAATAT
1 TTATAAAT-TAATAT
26091795 TAATTTTTAA
Statistics
Matches: 46, Mismatches: 10, Indels: 9
0.71 0.15 0.14
Matches are distributed among these distances:
20 8 0.17
21 3 0.07
22 15 0.33
23 8 0.17
24 7 0.15
25 5 0.11
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (21 bp):
TTATAAATTAATATATTTAAA
Found at i:26092316 original size:15 final size:16
Alignment explanation
Indices: 26092288--26092319 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
26092278 ATTATTAATG
26092288 TTTAAAAATAAAATAA
1 TTTAAAAATAAAATAA
26092304 TTTAAAAAT-AAATAA
1 TTTAAAAATAAAATAA
26092319 T
1 T
26092320 CATAATAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
TTTAAAAATAAAATAA
Found at i:26093149 original size:13 final size:13
Alignment explanation
Indices: 26093121--26093169 Score: 55
Period size: 13 Copynumber: 3.6 Consensus size: 13
26093111 TTCAAAGTAC
*
26093121 AAAAAAAATGATAA
1 AAAAAAAAT-AGAA
26093135 AAAATAAAATA-AA
1 AAAA-AAAATAGAA
26093148 AAAACAAAATAGAA
1 AAAA-AAAATAGAA
26093162 AAAAAAAA
1 AAAAAAAA
26093170 AACAATACCT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
13 16 0.50
14 11 0.34
15 5 0.16
ACGTcount: A:0.84, C:0.02, G:0.04, T:0.10
Consensus pattern (13 bp):
AAAAAAAATAGAA
Found at i:26093156 original size:18 final size:18
Alignment explanation
Indices: 26093135--26093169 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
26093125 AAAATGATAA
26093135 AAAATA-AAATAAAAAAAC
1 AAAATAGAAA-AAAAAAAC
26093153 AAAATAGAAAAAAAAAA
1 AAAATAGAAAAAAAAAA
26093170 AACAATACCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 13 0.81
19 3 0.19
ACGTcount: A:0.86, C:0.03, G:0.03, T:0.09
Consensus pattern (18 bp):
AAAATAGAAAAAAAAAAC
Found at i:26093156 original size:20 final size:20
Alignment explanation
Indices: 26093133--26093174 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
26093123 AAAAAATGAT
* *
26093133 AAAAAATAAAATAAAAAAAC
1 AAAAAAGAAAAAAAAAAAAC
*
26093153 AAAATAGAAAAAAAAAAAAC
1 AAAAAAGAAAAAAAAAAAAC
26093173 AA
1 AA
26093175 TACCTGAATG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.86, C:0.05, G:0.02, T:0.07
Consensus pattern (20 bp):
AAAAAAGAAAAAAAAAAAAC
Found at i:26096478 original size:14 final size:15
Alignment explanation
Indices: 26096449--26096490 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
26096439 CATAATACTT
26096449 AAAA-TTTTTTATAA
1 AAAATTTTTTTATAA
*
26096463 AATATTTTTTTA-AA
1 AAAATTTTTTTATAA
26096477 AAAATTATTTTTAT
1 AAAATT-TTTTTAT
26096491 TTTTTTGTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 10 0.43
15 13 0.57
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
AAAATTTTTTTATAA
Found at i:26100068 original size:3 final size:3
Alignment explanation
Indices: 26100062--26100097 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
26100052 TTTTTAATAG
*
26100062 ATT ATT ATT ATC ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
26100098 CATTTTCAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:26101123 original size:2 final size:2
Alignment explanation
Indices: 26101112--26101153 Score: 61
Period size: 2 Copynumber: 22.0 Consensus size: 2
26101102 CAATAAAAAG
*
26101112 TA TA -A TA TA TA TA TG TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
26101152 TA
1 TA
26101154 CCAAATCAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
1 2 0.06
2 34 0.94
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
TA
Found at i:26101335 original size:2 final size:2
Alignment explanation
Indices: 26101328--26101363 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
26101318 ACATTTTCNA
26101328 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26101364 TGTGTTATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26104762 original size:29 final size:29
Alignment explanation
Indices: 26104729--26104791 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
26104719 TGACGGAATT
*
26104729 AAAATTTTGA-ATTTAAAAAAATGAAAATG
1 AAAATTTTAATATTTAAAAAAAT-AAAATG
* *
26104758 AAAATTTTAATATTTTAAAAAATAAAATT
1 AAAATTTTAATATTTAAAAAAATAAAATG
26104787 AAAAT
1 AAAAT
26104792 ATTTTAAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
29 19 0.63
30 11 0.37
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (29 bp):
AAAATTTTAATATTTAAAAAAATAAAATG
Found at i:26104778 original size:23 final size:23
Alignment explanation
Indices: 26104752--26104814 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
26104742 TAAAAAAATG
**
26104752 AAAATGAAAATTTTAATATTTTAA
1 AAAAT-AAAATTAAAATATTTTAA
26104776 AAAATAAAATTAAAATATTTTAA
1 AAAATAAAATTAAAATATTTTAA
*
26104799 AAAATAAAAGTAAAAT
1 AAAATAAAATTAAAAT
26104815 TAAAATTTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
23 31 0.86
24 5 0.14
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (23 bp):
AAAATAAAATTAAAATATTTTAA
Found at i:26104796 original size:31 final size:30
Alignment explanation
Indices: 26104729--26104798 Score: 81
Period size: 30 Copynumber: 2.3 Consensus size: 30
26104719 TGACGGAATT
* *
26104729 AAAATTTTGA-ATTTAAAAAAATGAAAATG
1 AAAATTTTAATATTTAAAAAAATGAAAATA
*
26104758 AAAATTTTAATATTTTAAAAAAT-AAAATTA
1 AAAATTTTAATATTTAAAAAAATGAAAA-TA
26104788 AAATATTTTAA
1 AAA-ATTTTAA
26104799 AAAATAAAAG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
29 13 0.37
30 15 0.43
31 7 0.20
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (30 bp):
AAAATTTTAATATTTAAAAAAATGAAAATA
Found at i:26105647 original size:24 final size:25
Alignment explanation
Indices: 26105606--26105659 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 25
26105596 TTATTTTTTA
* *
26105606 AAAAAATGAATATAAATA-AAAAGT
1 AAAAAATAAAAATAAATAGAAAAGT
* *
26105630 AAAAAATAAAAATGAATAGAAAATT
1 AAAAAATAAAAATAAATAGAAAAGT
26105655 AAAAA
1 AAAAA
26105660 CAAATAGCAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
24 15 0.60
25 10 0.40
ACGTcount: A:0.74, C:0.00, G:0.07, T:0.19
Consensus pattern (25 bp):
AAAAAATAAAAATAAATAGAAAAGT
Found at i:26108478 original size:18 final size:19
Alignment explanation
Indices: 26108447--26108484 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
26108437 AAATTTATAT
* *
26108447 TAAAATATATTTTTATAAA
1 TAAAATATAATTTTAAAAA
26108466 TAAAA-ATAATTTTAAAAA
1 TAAAATATAATTTTAAAAA
26108484 T
1 T
26108485 TAACATATCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
TAAAATATAATTTTAAAAA
Found at i:26114891 original size:4 final size:4
Alignment explanation
Indices: 26114882--26114911 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
26114872 NAAAGAGTCT
26114882 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
26114912 CCCTCTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:26114985 original size:2 final size:2
Alignment explanation
Indices: 26114978--26115007 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
26114968 CAATGTTAGT
26114978 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
26115008 AATTAAAGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:26136928 original size:9 final size:10
Alignment explanation
Indices: 26136896--26136939 Score: 54
Period size: 10 Copynumber: 4.5 Consensus size: 10
26136886 ATGATATAAT
26136896 ATTTTAAAAA
1 ATTTTAAAAA
**
26136906 ATTTTAAATT
1 ATTTTAAAAA
26136916 A-TTTAAAAA
1 ATTTTAAAAA
*
26136925 ATTTTAATAA
1 ATTTTAAAAA
26136935 ATTTT
1 ATTTT
26136940 TATATTTTTA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
9 7 0.25
10 21 0.75
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (10 bp):
ATTTTAAAAA
Found at i:26136938 original size:19 final size:19
Alignment explanation
Indices: 26136893--26136931 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
26136883 TTTATGATAT
*
26136893 AATATTTTAAAAAATTTTA
1 AATAATTTAAAAAATTTTA
*
26136912 AATTATTTAAAAAATTTTA
1 AATAATTTAAAAAATTTTA
26136931 A
1 A
26136932 TAAATTTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
AATAATTTAAAAAATTTTA
Found at i:26137006 original size:30 final size:30
Alignment explanation
Indices: 26136930--26137032 Score: 102
Period size: 30 Copynumber: 3.5 Consensus size: 30
26136920 AAAAAATTTT
** *
26136930 AATAAATTTTTATATTTTTA--TTACGTTG
1 AATAAATTTTTATATTTTTATTTTAAATTA
* * * *
26136958 AATCAAGTTATAATATTTTTGTTTTAAATTA
1 AAT-AAATTTTTATATTTTTATTTTAAATTA
* *
26136989 AATATATTTTTATATTTTTATTTTGAATTA
1 AATAAATTTTTATATTTTTATTTTAAATTA
26137019 AATAAATTTTTATA
1 AATAAATTTTTATA
26137033 ATTAATTATT
Statistics
Matches: 58, Mismatches: 14, Indels: 4
0.76 0.18 0.05
Matches are distributed among these distances:
28 3 0.05
29 13 0.22
30 34 0.59
31 8 0.14
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.56
Consensus pattern (30 bp):
AATAAATTTTTATATTTTTATTTTAAATTA
Found at i:26149174 original size:23 final size:22
Alignment explanation
Indices: 26149148--26149193 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 22
26149138 AGCGAGAATC
26149148 AAAGAGAAGAAAAAT-AGACCAAA
1 AAAGA-AAGAAAAATGAGA-CAAA
*
26149171 AAAGATAGAAAAATGAGACAAA
1 AAAGAAAGAAAAATGAGACAAA
26149193 A
1 A
26149194 TCCATCTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 13 0.62
23 8 0.38
ACGTcount: A:0.70, C:0.07, G:0.17, T:0.07
Consensus pattern (22 bp):
AAAGAAAGAAAAATGAGACAAA
Found at i:26149883 original size:19 final size:20
Alignment explanation
Indices: 26149845--26149882 Score: 62
Period size: 18 Copynumber: 2.0 Consensus size: 20
26149835 TAAAATAACA
26149845 AAAATTAATTTAAAATTTTT
1 AAAATTAATTTAAAATTTTT
26149865 AAAA-TAATTT-AAATTTTT
1 AAAATTAATTTAAAATTTTT
26149883 TTGTAGATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 8 0.44
19 6 0.33
20 4 0.22
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
AAAATTAATTTAAAATTTTT
Found at i:26150762 original size:16 final size:17
Alignment explanation
Indices: 26150738--26150775 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
26150728 ATCGTGAAAC
*
26150738 TTTTGAAAAAA-CAATA
1 TTTTTAAAAAATCAATA
26150754 TTTTTAAAAAATCAATA
1 TTTTTAAAAAATCAATA
26150771 TTTTT
1 TTTTT
26150776 TTAAAAGAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (17 bp):
TTTTTAAAAAATCAATA
Found at i:26150781 original size:17 final size:17
Alignment explanation
Indices: 26150738--26150775 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
26150728 ATCGTGAAAC
*
26150738 TTTTGAAAAAACAATAT
1 TTTTAAAAAAACAATAT
*
26150755 TTTTAAAAAATCAATAT
1 TTTTAAAAAAACAATAT
26150772 TTTT
1 TTTT
26150776 TTAAAAGAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (17 bp):
TTTTAAAAAAACAATAT
Found at i:26151731 original size:23 final size:23
Alignment explanation
Indices: 26151701--26151779 Score: 70
Period size: 23 Copynumber: 3.3 Consensus size: 23
26151691 ATTAAATACC
*
26151701 AATAATTTATTGTTAAATTA-TTA
1 AATAATTTA-TATTAAATTAGTTA
26151724 AATAATTTATATTAAATTAGTTA
1 AATAATTTATATTAAATTAGTTA
* * * * *
26151747 TATAAATTTTTATTTTAATTATTTG
1 AAT-AATTTATA-TTAAATTAGTTA
26151772 AATAATTT
1 AATAATTT
26151780 TATCTATTTG
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
22 9 0.20
23 14 0.30
24 12 0.26
25 11 0.24
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (23 bp):
AATAATTTATATTAAATTAGTTA
Found at i:26166932 original size:16 final size:16
Alignment explanation
Indices: 26166891--26166934 Score: 56
Period size: 14 Copynumber: 2.9 Consensus size: 16
26166881 TCTTCTTCGA
* *
26166891 ATCTGGATTTTTTTTT
1 ATCTGGGTTTTCTTTT
26166907 AT-TGGG-TTTCTTTT
1 ATCTGGGTTTTCTTTT
26166921 ATCTGGGTTTTCTT
1 ATCTGGGTTTTCTT
26166935 CTTCTAGCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
14 9 0.38
15 7 0.29
16 8 0.33
ACGTcount: A:0.09, C:0.09, G:0.18, T:0.64
Consensus pattern (16 bp):
ATCTGGGTTTTCTTTT
Found at i:26168596 original size:33 final size:33
Alignment explanation
Indices: 26168528--26168597 Score: 81
Period size: 33 Copynumber: 2.1 Consensus size: 33
26168518 TTAAATTTGT
* *
26168528 ATTATAATAATAAATACAAATAAAATATTTGAG
1 ATTATAATAAGAAATACAAATAAAATATTTAAG
*
26168561 ATTATAATAAGAAATGA-AGATAAAAT-TTATAAG
1 ATTATAATAAGAAAT-ACAAATAAAATATT-TAAG
26168594 ATTA
1 ATTA
26168598 AAAATTTATT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
32 2 0.06
33 29 0.91
34 1 0.03
ACGTcount: A:0.57, C:0.01, G:0.09, T:0.33
Consensus pattern (33 bp):
ATTATAATAAGAAATACAAATAAAATATTTAAG
Found at i:26170605 original size:21 final size:21
Alignment explanation
Indices: 26170581--26170631 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
26170571 CATTTTTATA
26170581 ATTTTTTATATGT-TATTTAGG
1 ATTTTTTATA-GTATATTTAGG
* *
26170602 ATTTTTTCTAGTATTTTTAGG
1 ATTTTTTATAGTATATTTAGG
*
26170623 AATTTTTAT
1 ATTTTTTAT
26170632 CATTCAAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 2 0.08
21 23 0.92
ACGTcount: A:0.24, C:0.02, G:0.12, T:0.63
Consensus pattern (21 bp):
ATTTTTTATAGTATATTTAGG
Found at i:26184559 original size:21 final size:21
Alignment explanation
Indices: 26184533--26184572 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
26184523 CTTTTAGAAA
*
26184533 TATTTCTTAAGTATCGATATT
1 TATTTCGTAAGTATCGATATT
*
26184554 TATTTCGTGAGTATCGATA
1 TATTTCGTAAGTATCGATA
26184573 CTTTCTAAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.28, C:0.10, G:0.15, T:0.47
Consensus pattern (21 bp):
TATTTCGTAAGTATCGATATT
Found at i:26187561 original size:19 final size:20
Alignment explanation
Indices: 26187524--26187562 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
26187514 AGATTGAAGG
26187524 ATGAAAAGATCCATAACAAAA
1 ATGAAAAGA-CCATAACAAAA
*
26187545 ATGAAAAG-CCATTACAAA
1 ATGAAAAGACCATAACAAA
26187563 TAACGGCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
21 8 0.47
ACGTcount: A:0.59, C:0.15, G:0.10, T:0.15
Consensus pattern (20 bp):
ATGAAAAGACCATAACAAAA
Found at i:26203436 original size:21 final size:20
Alignment explanation
Indices: 26203371--26203543 Score: 93
Period size: 20 Copynumber: 8.6 Consensus size: 20
26203361 AAAAAAAAGA
*
26203371 TTTA-GGTTTTTAAAATCGGT
1 TTTAGGGTTTTT-GAATCGGT
* * * *
26203391 TTTAGAGATTTTGTATCGGG
1 TTTAGGGTTTTTGAATCGGT
*
26203411 TTTAGGGTTTCTTGAATTGGT
1 TTTAGGGTTT-TTGAATCGGT
*
26203432 TTTAGTG-TTTT-AAGTCGGT
1 TTTAGGGTTTTTGAA-TCGGT
* * * * *
26203451 TTAAGGATTATTGAAT-TGA
1 TTTAGGGTTTTTGAATCGGT
* *
26203470 TTTAGGCTTTTTTAAAATCGGT
1 TTTAGG-GTTTTT-GAATCGGT
* * *
26203492 TTTAGGATTTTTTGAATTGAT
1 TTTAGG-GTTTTTGAATCGGT
*
26203513 TTTAGGGTTTTTAAATCGGT
1 TTTAGGGTTTTTGAATCGGT
*
26203533 TTAAGGGTTTT
1 TTTAGGGTTTT
26203544 ATTGAATCAA
Statistics
Matches: 112, Mismatches: 33, Indels: 16
0.70 0.20 0.10
Matches are distributed among these distances:
18 2 0.02
19 16 0.14
20 47 0.42
21 34 0.30
22 13 0.12
ACGTcount: A:0.22, C:0.04, G:0.24, T:0.50
Consensus pattern (20 bp):
TTTAGGGTTTTTGAATCGGT
Found at i:26203524 original size:42 final size:41
Alignment explanation
Indices: 26203409--26203565 Score: 151
Period size: 42 Copynumber: 3.9 Consensus size: 41
26203399 TTTTGTATCG
* * * * *
26203409 GGTTT-AGGGTTTCTTGAATTGGTTTTAGTG-TTTTAAGTC
1 GGTTTAAGGATTTTTTGAATTGATTTTAGGGTTTTTAAATC
* *
26203448 GGTTTAAGGA-TTATTGAATTGA-TTTAGGCTTTTTTAAAATC
1 GGTTTAAGGATTTTTTGAATTGATTTTAGG-GTTTTT-AAATC
*
26203489 GGTTTTAGGATTTTTTGAATTGATTTTAGGGTTTTTAAATC
1 GGTTTAAGGATTTTTTGAATTGATTTTAGGGTTTTTAAATC
* ** *
26203530 GGTTTAAGGGTTTTATTGAATCAATTTTAAGGTTTT
1 GGTTTAAGGATTTT-TTGAATTGATTTTAGGGTTTT
26203566 ATTGGGGTTT
Statistics
Matches: 97, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
38 5 0.05
39 15 0.15
40 7 0.07
41 30 0.31
42 34 0.35
43 6 0.06
ACGTcount: A:0.23, C:0.04, G:0.23, T:0.50
Consensus pattern (41 bp):
GGTTTAAGGATTTTTTGAATTGATTTTAGGGTTTTTAAATC
Found at i:26203755 original size:20 final size:20
Alignment explanation
Indices: 26203732--26203795 Score: 83
Period size: 20 Copynumber: 3.2 Consensus size: 20
26203722 GGATTTATGA
26203732 TTTTTCAATCGATTTTAGGG
1 TTTTTCAATCGATTTTAGGG
* * **
26203752 TTTTTGAATTGATTTTAAAG
1 TTTTTCAATCGATTTTAGGG
*
26203772 TTTTTCAATCAATTTTAGGG
1 TTTTTCAATCGATTTTAGGG
26203792 TTTT
1 TTTT
26203796 AAGGTTCTCA
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.23, C:0.06, G:0.16, T:0.55
Consensus pattern (20 bp):
TTTTTCAATCGATTTTAGGG
Found at i:26204310 original size:2 final size:2
Alignment explanation
Indices: 26204303--26204340 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
26204293 GTTCAAGTAC
26204303 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
26204341 CGATAGTTAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:26212833 original size:22 final size:22
Alignment explanation
Indices: 26212805--26212847 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
26212795 AACTTGATTC
26212805 AGTGCATAGATGATCAGATGCA
1 AGTGCATAGATGATCAGATGCA
*
26212827 AGTGCATAGCTGATCAGATGC
1 AGTGCATAGATGATCAGATGC
26212848 TTAAGTCCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.33, C:0.16, G:0.28, T:0.23
Consensus pattern (22 bp):
AGTGCATAGATGATCAGATGCA
Found at i:26212858 original size:24 final size:22
Alignment explanation
Indices: 26212809--26212859 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 22
26212799 TGATTCAGTG
*
26212809 CATAGATGATCAGATGCAAGTG
1 CATAGATGATCAGATGCAAGTC
*
26212831 CATAGCTGATCAGATGCTTAAGTC
1 CATAGATGATCAGATGC--AAGTC
26212855 CATAG
1 CATAG
26212860 GAGCTTATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 16 0.64
24 9 0.36
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (22 bp):
CATAGATGATCAGATGCAAGTC
Found at i:26216500 original size:12 final size:13
Alignment explanation
Indices: 26216451--26216506 Score: 53
Period size: 12 Copynumber: 4.4 Consensus size: 13
26216441 ACAAAGATAT
*
26216451 GAAAAGAAAAAGA
1 GAAAAGAAGAAGA
*
26216464 GGAAAAGAAGGAG-
1 -GAAAAGAAGAAGA
*
26216477 GAGAAGAAGAAGA
1 GAAAAGAAGAAGA
*
26216490 -AAAAGAGGAAGA
1 GAAAAGAAGAAGA
26216502 GAAAA
1 GAAAA
26216507 ACAAAAGGAA
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
12 20 0.59
13 4 0.12
14 10 0.29
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (13 bp):
GAAAAGAAGAAGA
Found at i:26219136 original size:15 final size:15
Alignment explanation
Indices: 26219116--26219147 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
26219106 TGATTAATTA
26219116 TTTTTAATAATTAAT
1 TTTTTAATAATTAAT
*
26219131 TTTTTAATAATTTAT
1 TTTTTAATAATTAAT
26219146 TT
1 TT
26219148 AAAATATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
TTTTTAATAATTAAT
Found at i:26224401 original size:6 final size:6
Alignment explanation
Indices: 26224383--26224417 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
26224373 AATATAAAAA
*
26224383 AAGGAG AAAGAG AAGGAG AAGGAG AAGGAG AAGGA
1 AAGGAG AAGGAG AAGGAG AAGGAG AAGGAG AAGGA
26224418 AAGAAAGAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.54, C:0.00, G:0.46, T:0.00
Consensus pattern (6 bp):
AAGGAG
Found at i:26224426 original size:18 final size:18
Alignment explanation
Indices: 26224387--26224429 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
26224377 TAAAAAAAGG
*
26224387 AGAAAGAGAAGGAGAAGG
1 AGAAAGAGAAGGAGAAGA
*
26224405 AGAAGGAGAAGGA-AAGAA
1 AGAAAGAGAAGGAGAAG-A
26224423 AGAAAGA
1 AGAAAGA
26224430 AGAAAAAGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 3 0.14
18 18 0.86
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (18 bp):
AGAAAGAGAAGGAGAAGA
Found at i:26225387 original size:36 final size:39
Alignment explanation
Indices: 26225333--26225414 Score: 98
Period size: 36 Copynumber: 2.2 Consensus size: 39
26225323 AATTGTTACA
**
26225333 AAAAAATAGTATACATAATAAAATATAAATAAA-AAA-T
1 AAAAAATAAAATACATAATAAAATATAAATAAATAAAGT
** *
26225370 AAAAAATAAAATA-ATAATAATTTATATATAAATAAAGT
1 AAAAAATAAAATACATAATAAAATATAAATAAATAAAGT
26225408 AAAAAAT
1 AAAAAAT
26225415 CACCTTAAAC
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
36 16 0.42
37 14 0.37
38 8 0.21
ACGTcount: A:0.70, C:0.01, G:0.02, T:0.27
Consensus pattern (39 bp):
AAAAAATAAAATACATAATAAAATATAAATAAATAAAGT
Found at i:26225388 original size:18 final size:18
Alignment explanation
Indices: 26225333--26225389 Score: 53
Period size: 18 Copynumber: 3.1 Consensus size: 18
26225323 AATTGTTACA
**
26225333 AAAAAATAGTATACATAAT
1 AAAAAATAAAATA-ATAAT
* *
26225352 AAAATAT-AAATAAAAAAT
1 AAAAAATAAAAT-AATAAT
26225370 AAAAAATAAAATAATAAT
1 AAAAAATAAAATAATAAT
26225388 AA
1 AA
26225390 TTTATATATA
Statistics
Matches: 30, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
18 19 0.63
19 11 0.37
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.23
Consensus pattern (18 bp):
AAAAAATAAAATAATAAT
Found at i:26239342 original size:24 final size:22
Alignment explanation
Indices: 26239313--26239394 Score: 92
Period size: 24 Copynumber: 3.5 Consensus size: 22
26239303 ATACTCAATA
26239313 AAATAAAAAATTAAATTAAATAAT
1 AAATAAAAAA-TAAATTAAA-AAT
*
26239337 AAATAAATAAATATAATTAAAATT
1 AAATAAA-AAATA-AATTAAAAAT
*
26239361 AAATAAAATAATAAATAAAAAAT
1 AAATAAAA-AATAAATTAAAAAT
*
26239384 AAAAAAAAAAT
1 AAATAAAAAAT
26239395 CAGGGATGGC
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
22 3 0.06
23 16 0.31
24 22 0.43
25 10 0.20
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (22 bp):
AAATAAAAAATAAATTAAAAAT
Found at i:26239343 original size:4 final size:4
Alignment explanation
Indices: 26239313--26239386 Score: 59
Period size: 4 Copynumber: 18.8 Consensus size: 4
26239303 ATACTCAATA
* *
26239313 AAAT AAA- AAATT AAATT AAAT -AAT AAAT AAAT AAAT ATAAT TAA- AATT
1 AAAT AAAT AAA-T AAA-T AAAT AAAT AAAT AAAT AAAT A-AAT AAAT AAAT
26239361 AAAT AAA- ATAAT AAAT AAA- AAAT AAA
1 AAAT AAAT A-AAT AAAT AAAT AAAT AAA
26239387 AAAAAAATCA
Statistics
Matches: 58, Mismatches: 4, Indels: 16
0.74 0.05 0.21
Matches are distributed among these distances:
3 11 0.19
4 35 0.60
5 12 0.21
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (4 bp):
AAAT
Found at i:26254956 original size:2 final size:2
Alignment explanation
Indices: 26254949--26254991 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
26254939 NNNNNNNNNN
26254949 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26254991 A
1 A
26254992 AGCTTAAGTG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:26257676 original size:16 final size:16
Alignment explanation
Indices: 26257656--26257689 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
26257646 AAAAACAGAC
*
26257656 ATTTTT-AATTGTTAT
1 ATTTTTAAATTGTCAT
26257671 ATTTTTAAATTGTCAT
1 ATTTTTAAATTGTCAT
26257687 ATT
1 ATT
26257690 AAATTACATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.29, C:0.03, G:0.06, T:0.62
Consensus pattern (16 bp):
ATTTTTAAATTGTCAT
Found at i:26260425 original size:23 final size:22
Alignment explanation
Indices: 26260382--26260425 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 22
26260372 AAATACAAGC
* **
26260382 ATATTTTTATTATAATTTAATA
1 ATATTTTTATTAGAAGATAATA
26260404 ATATTTTGTATTAGAAGATAAT
1 ATATTTT-TATTAGAAGATAAT
26260426 TAAACCTTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (22 bp):
ATATTTTTATTAGAAGATAATA
Found at i:26260554 original size:45 final size:45
Alignment explanation
Indices: 26260493--26260586 Score: 116
Period size: 45 Copynumber: 2.1 Consensus size: 45
26260483 ATTAAATTTA
* * *
26260493 AATAATACTAAATAATATTCTTTATTACATTTACTATATTCAAAT
1 AATAATACTAAATAATATGCTTTATAACATTTACTATAGTCAAAT
* * * * *
26260538 AATAATATTAAGTAATATGCTTTATAATATTTATTATAGTGAAAT
1 AATAATACTAAATAATATGCTTTATAACATTTACTATAGTCAAAT
26260583 AATA
1 AATA
26260587 TTTAAATATT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.46, C:0.06, G:0.04, T:0.44
Consensus pattern (45 bp):
AATAATACTAAATAATATGCTTTATAACATTTACTATAGTCAAAT
Found at i:26261759 original size:22 final size:22
Alignment explanation
Indices: 26261734--26261775 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
26261724 TGGCTTTAGG
*
26261734 CATTACGTGACTAATTTTTATA
1 CATTACATGACTAATTTTTATA
* *
26261756 CATTGCATGACTGATTTTTA
1 CATTACATGACTAATTTTTA
26261776 AGCAATGCCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.29, C:0.14, G:0.12, T:0.45
Consensus pattern (22 bp):
CATTACATGACTAATTTTTATA
Found at i:26261820 original size:23 final size:23
Alignment explanation
Indices: 26261787--26261869 Score: 112
Period size: 23 Copynumber: 3.6 Consensus size: 23
26261777 GCAATGCCTA
* *
26261787 AGTCACACAATACCTTACGAATT
1 AGTCACGCAATACCTTACGAACT
*
26261810 AGTCACGCAATGCCTTACGAACT
1 AGTCACGCAATACCTTACGAACT
* *
26261833 AGTCACGCAATGCCTTACGAACA
1 AGTCACGCAATACCTTACGAACT
*
26261856 AGTCATGCAATACC
1 AGTCACGCAATACC
26261870 CTATCAACTA
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 54 1.00
ACGTcount: A:0.35, C:0.29, G:0.14, T:0.22
Consensus pattern (23 bp):
AGTCACGCAATACCTTACGAACT
Found at i:26261879 original size:46 final size:46
Alignment explanation
Indices: 26261787--26261895 Score: 112
Period size: 46 Copynumber: 2.4 Consensus size: 46
26261777 GCAATGCCTA
* * ** * *
26261787 AGTCACACAATACCTTACGAATTAGTCACGCAATGCCTTACGAACT
1 AGTCACGCAATGCCTTACGAACAAGTCACGCAATACCCTACGAACT
*
26261833 AGTCACGCAATGCCTTACGAACAAGTCATGCAATACCCTATC-AACT
1 AGTCACGCAATGCCTTACGAACAAGTCACGCAATACCCTA-CGAACT
* * *
26261879 AGTTATGCAATGTCTTA
1 AGTCACGCAATGCCTTA
26261896 TCATAAACTA
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
46 51 0.98
47 1 0.02
ACGTcount: A:0.34, C:0.27, G:0.14, T:0.26
Consensus pattern (46 bp):
AGTCACGCAATGCCTTACGAACAAGTCACGCAATACCCTACGAACT
Found at i:26261914 original size:26 final size:26
Alignment explanation
Indices: 26261875--26262003 Score: 115
Period size: 26 Copynumber: 5.1 Consensus size: 26
26261865 ATACCCTATC
* * *
26261875 AACTAGTTATGCAATGTCTTATCATA
1 AACTAGTCACGCAATGTCTTATCAAA
*
26261901 AACTAGTCACGCAAT-ACTT-T-AAA
1 AACTAGTCACGCAATGTCTTATCAAA
* * *
26261924 AACTAATCAC-CTAATGCCTTATAAAA
1 AACTAGTCACGC-AATGTCTTATCAAA
* *
26261950 AACTAGTCACGCAATATCTTATCAGA
1 AACTAGTCACGCAATGTCTTATCAAA
*
26261976 AACTAGTCACGTAATG-CTTTATCAAA
1 AACTAGTCACGCAATGTC-TTATCAAA
26262002 AA
1 AA
26262004 TCAATCACGT
Statistics
Matches: 83, Mismatches: 14, Indels: 12
0.76 0.13 0.11
Matches are distributed among these distances:
22 1 0.01
23 14 0.17
24 4 0.05
25 5 0.06
26 58 0.70
27 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.29
Consensus pattern (26 bp):
AACTAGTCACGCAATGTCTTATCAAA
Found at i:26262012 original size:52 final size:49
Alignment explanation
Indices: 26261900--26262019 Score: 125
Period size: 52 Copynumber: 2.4 Consensus size: 49
26261890 GTCTTATCAT
*
26261900 AAACTAGTCACGCAATACTTTAAAAACTAATCACCTAATGCCTTATAAA
1 AAACTAATCACGCAATACTTTAAAAACTAATCACCTAATGCCTTATAAA
* * * * * *
26261949 AAACTAGTCACGCAATATCTTATCAGAAACTAGTCACGTAATGCTTTATCAA
1 AAACTAATCACGCAATA-CTT-T-AAAAACTAATCACCTAATGCCTTATAAA
*
26262001 AAA-TCAATCACGTAATACT
1 AAACT-AATCACGCAATACT
26262020 CAAAGTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
49 17 0.28
50 3 0.05
51 4 0.07
52 36 0.60
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.28
Consensus pattern (49 bp):
AAACTAATCACGCAATACTTTAAAAACTAATCACCTAATGCCTTATAAA
Found at i:26270021 original size:39 final size:39
Alignment explanation
Indices: 26269963--26270045 Score: 159
Period size: 39 Copynumber: 2.2 Consensus size: 39
26269953 TCAACCCCTA
26269963 ATTT-TATTGCATCAGTATGAGTTATGACGCGAGCTGCT
1 ATTTCTATTGCATCAGTATGAGTTATGACGCGAGCTGCT
26270001 ATTTCTATTGCATCAGTATGAGTTATGACGCGAGCTGCT
1 ATTTCTATTGCATCAGTATGAGTTATGACGCGAGCTGCT
26270040 ATTTCT
1 ATTTCT
26270046 GACTATGTAT
Statistics
Matches: 44, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
38 4 0.09
39 40 0.91
ACGTcount: A:0.23, C:0.17, G:0.22, T:0.39
Consensus pattern (39 bp):
ATTTCTATTGCATCAGTATGAGTTATGACGCGAGCTGCT
Found at i:26274052 original size:133 final size:137
Alignment explanation
Indices: 26273804--26274344 Score: 668
Period size: 133 Copynumber: 4.0 Consensus size: 137
26273794 CGTTCGTCAA
* *
26273804 CTGCCGACCTACCACGCCAAGCTCGGCTCCTTCATCGGTTCAGCTTTCTTTTCTCTCCAACCGCC
1 CTGCCGGCCTACCACGCCAAGCTCGGCTCCTTCATCGGTTCAGCTTTCTTTTCTCTCCAACCACC
* * * *
26273869 TAG---C-CACAGCCACGCCCTGCCGGTTGCCTCGTTGTCACCCCAAGCCCCACGCCCTTGTTCT
66 TAGCCACACACAGCCACGCCCTGCCGGCTGCCTCGGTGTCGCCCCAAACCCCACGCCCTTGTTCT
* *
26273930 TCCTTAC
131 TCCCTAG
* * *
26273937 CTGCTGGCCTACCACGCCAAGCTCGGCTCCTTCCTCGGTTCAGCTTTCTTTTCTCTCCATCCACC
1 CTGCCGGCCTACCACGCCAAGCTCGGCTCCTTCATCGGTTCAGCTTTCTTTTCTCTCCAACCACC
** *
26274002 TAG-C-CACA-A-CCACGCCCTGCCGGCTGCCTCAATGTCGCCCCAAACTCCACGCCCTTGTTCT
66 TAGCCACACACAGCCACGCCCTGCCGGCTGCCTCGGTGTCGCCCCAAACCCCACGCCCTTGTTCT
*
26274063 TCCGTAG
131 TCCCTAG
* * * * *
26274070 CTACCAGCCTACCACGCCATGCTCGGCTCCTTCCAT-GGTTCAACTTTCTTTTCTCTCCAACCGC
1 CTGCCGGCCTACCACGCCAAGCTCGGCTCCTT-CATCGGTTCAGCTTTCTTTTCTCTCCAACCAC
* * *
26274134 CTAGCCACAGCCACAGCCACACCCTGCCGACTGCCTCGGTGTCGCCCCAAACCCCACGGCCTTGT
65 CTAGCCACA--CACAGCCACGCCCTGCCGGCTGCCTCGGTGTCGCCCCAAACCCCACGCCCTTGT
*
26274199 TATTCCCTAG
128 TCTTCCCTAG
* * * ** *
26274209 TTGCCGGCCTACCACGCCACGCTTGGCTCCTTCATCAATTCAGCTTTCTTTTCTCTACAACCACC
1 CTGCCGGCCTACCACGCCAAGCTCGGCTCCTTCATCGGTTCAGCTTTCTTTTCTCTCCAACCACC
* * * *
26274274 TAGCCACAACGACAGCCACGCCCTGCCGGCTGCCTCGGTGTCGCCTCAAGCCCCATGCTCTTGTT
66 TAGCCAC-AC-ACAGCCACGCCCTGCCGGCTGCCTCGGTGTCGCCCCAAACCCCACGCCCTTGTT
26274339 CTTCCC
129 CTTCCC
26274345 CAATTAAGAT
Statistics
Matches: 349, Mismatches: 47, Indels: 18
0.84 0.11 0.04
Matches are distributed among these distances:
133 171 0.49
134 5 0.01
135 4 0.01
137 2 0.01
138 5 0.01
139 161 0.46
140 1 0.00
ACGTcount: A:0.15, C:0.43, G:0.16, T:0.25
Consensus pattern (137 bp):
CTGCCGGCCTACCACGCCAAGCTCGGCTCCTTCATCGGTTCAGCTTTCTTTTCTCTCCAACCACC
TAGCCACACACAGCCACGCCCTGCCGGCTGCCTCGGTGTCGCCCCAAACCCCACGCCCTTGTTCT
TCCCTAG
Found at i:26284662 original size:74 final size:75
Alignment explanation
Indices: 26284580--26284721 Score: 191
Period size: 74 Copynumber: 1.9 Consensus size: 75
26284570 ATAATTACCA
* * *
26284580 AAATTCCATTTATTAGAATCCACCGA-ACATGAG-TGCCTTTATAACTCTGAC-AAAACGACATC
1 AAATTCCATTTATTAGAATCCACC-ATACATGAGCT-ACTTTACAACTCTAACGAAAACGACATC
26284642 GTTTTTGTCATC
64 GTTTTTGTCATC
* * *
26284654 AAATTCCATTTATTAGAATTCACCATTCATGAGCTATTTTACAACTCTAACGAAAACGACATCGT
1 AAATTCCATTTATTAGAATCCACCATACATGAGCTACTTTACAACTCTAACGAAAACGACATCGT
26284719 TTT
66 TTT
26284722 AACAAATTCT
Statistics
Matches: 59, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
73 1 0.02
74 41 0.69
75 17 0.29
ACGTcount: A:0.34, C:0.22, G:0.11, T:0.34
Consensus pattern (75 bp):
AAATTCCATTTATTAGAATCCACCATACATGAGCTACTTTACAACTCTAACGAAAACGACATCGT
TTTTGTCATC
Found at i:26285432 original size:31 final size:29
Alignment explanation
Indices: 26285397--26285473 Score: 95
Period size: 28 Copynumber: 2.6 Consensus size: 29
26285387 ATTAATTTTT
26285397 TATTTATAATTTAAATATATGAAAATATTAA
1 TATTTATAATTTAAATAT-T-AAAATATTAA
* *
26285428 TATTTTTAATTTTAAT-TTAAAATATTAA
1 TATTTATAATTTAAATATTAAAATATTAA
26285456 T-TTTATAAGTTTAAATAT
1 TATTTATAA-TTTAAATAT
26285474 GTAATTTTTA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
27 6 0.15
28 17 0.43
29 2 0.05
30 1 0.03
31 14 0.35
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (29 bp):
TATTTATAATTTAAATATTAAAATATTAA
Found at i:26285451 original size:38 final size:36
Alignment explanation
Indices: 26285382--26285452 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
26285372 NNNNNNNNTT
26285382 AAAATATTAATTTTTTATTTATAATTTAAATATATG
1 AAAATATTAATTTTTTATTTATAATTTAAATATATG
26285418 AAAATATTAATATTTTTAATTT-TAATTTAAA-ATAT
1 AAAATATTAAT-TTTTT-ATTTATAATTTAAATATAT
26285453 TAATTTTATA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
36 15 0.45
37 14 0.42
38 4 0.12
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.52
Consensus pattern (36 bp):
AAAATATTAATTTTTTATTTATAATTTAAATATATG
Found at i:26302865 original size:2 final size:2
Alignment explanation
Indices: 26302858--26302962 Score: 133
Period size: 2 Copynumber: 53.0 Consensus size: 2
26302848 CTTAAAGCCA
* * * **
26302858 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT NT AA AC CC A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
26302899 AT AT AT AT GT AT AT AT AT AT AT A- AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26302940 AT AT ACT AT AT AT AT AT AT AT AT
1 AT AT A-T AT AT AT AT AT AT AT AT
26302963 CAGTATAACC
Statistics
Matches: 92, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
1 2 0.02
2 88 0.96
3 2 0.02
ACGTcount: A:0.49, C:0.04, G:0.01, T:0.46
Consensus pattern (2 bp):
AT
Found at i:26302969 original size:25 final size:23
Alignment explanation
Indices: 26302858--26302962 Score: 140
Period size: 23 Copynumber: 4.6 Consensus size: 23
26302848 CTTAAAGCCA
26302858 ATATATATATATATATAT-ATAT
1 ATATATATATATATATATAATAT
* * ***
26302880 ATATATATATNTAAACCCAATAT
1 ATATATATATATATATATAATAT
*
26302903 ATATGTATATATATATATAATAT
1 ATATATATATATATATATAATAT
*
26302926 ATATATATATATATATATACTAT
1 ATATATATATATATATATAATAT
26302949 ATATATATATATAT
1 ATATATATATATAT
26302963 CAGTATAACC
Statistics
Matches: 69, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
22 13 0.19
23 56 0.81
ACGTcount: A:0.49, C:0.04, G:0.01, T:0.46
Consensus pattern (23 bp):
ATATATATATATATATATAATAT
Found at i:26304139 original size:21 final size:21
Alignment explanation
Indices: 26304111--26304162 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
26304101 ATCAGTTTAT
* *
26304111 TTAATTTTTATTAAAATATTA
1 TTAATTTTAAATAAAATATTA
* *
26304132 TTGATTTTAAATAAAATTTTA
1 TTAATTTTAAATAAAATATTA
26304153 TTAATTTTAA
1 TTAATTTTAA
26304163 TTTTGAAATT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (21 bp):
TTAATTTTAAATAAAATATTA
Found at i:26305024 original size:17 final size:16
Alignment explanation
Indices: 26304984--26305028 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
26304974 AATACATGCA
*
26304984 TATTAAATTTATAGAAG
1 TATT-AATTTATCGAAG
26305001 T-TTAATTTATCGAAG
1 TATTAATTTATCGAAG
26305016 TTATTAATTTATC
1 -TATTAATTTATC
26305029 AAATATTATG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 11 0.44
16 3 0.12
17 11 0.44
ACGTcount: A:0.38, C:0.04, G:0.09, T:0.49
Consensus pattern (16 bp):
TATTAATTTATCGAAG
Found at i:26305943 original size:6 final size:6
Alignment explanation
Indices: 26305932--26305957 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
26305922 ATAACAGACC
26305932 AAAAGA AAAAGA AAAAGA AAAAGA AA
1 AAAAGA AAAAGA AAAAGA AAAAGA AA
26305958 TGATTGAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:26318572 original size:17 final size:18
Alignment explanation
Indices: 26318550--26318593 Score: 63
Period size: 17 Copynumber: 2.5 Consensus size: 18
26318540 TAAATTAATA
26318550 TAAAAATATATAT-TATT
1 TAAAAATATATATATATT
*
26318567 TAAAAATCTATATATATT
1 TAAAAATATATATATATT
*
26318585 AAAAAATAT
1 TAAAAATAT
26318594 GTTAAAAGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
17 12 0.52
18 11 0.48
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (18 bp):
TAAAAATATATATATATT
Found at i:26321771 original size:11 final size:11
Alignment explanation
Indices: 26321755--26321780 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
26321745 TTGCTTGTTC
26321755 CAACGAATTTT
1 CAACGAATTTT
26321766 CAACGAATTTT
1 CAACGAATTTT
26321777 CAAC
1 CAAC
26321781 AGACTTATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (11 bp):
CAACGAATTTT
Found at i:26321956 original size:13 final size:14
Alignment explanation
Indices: 26321930--26321963 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
26321920 AATTTCTAAC
26321930 GAAATTTTTCGTTG
1 GAAATTTTTCGTTG
26321944 GAAATTTTT-GTTG
1 GAAATTTTTCGTTG
*
26321957 AAAATTT
1 GAAATTT
26321964 GTTAAAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.53
14 9 0.47
ACGTcount: A:0.29, C:0.03, G:0.18, T:0.50
Consensus pattern (14 bp):
GAAATTTTTCGTTG
Found at i:26322397 original size:17 final size:19
Alignment explanation
Indices: 26322362--26322398 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
26322352 AATTCCATTG
26322362 AAAATAATAATAATGTTAA
1 AAAATAATAATAATGTTAA
*
26322381 AAAATTATAA-AAT-TTAA
1 AAAATAATAATAATGTTAA
26322398 A
1 A
26322399 CTTTTTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 5 0.29
18 3 0.18
19 9 0.53
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (19 bp):
AAAATAATAATAATGTTAA
Found at i:26323200 original size:17 final size:18
Alignment explanation
Indices: 26323157--26323191 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
26323147 AATTCATATA
*
26323157 ATTAATAAAATTATAATT
1 ATTAATTAAATTATAATT
26323175 ATTAATTAAATTATAAT
1 ATTAATTAAATTATAAT
26323192 ATTTTTTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
ATTAATTAAATTATAATT
Found at i:26323284 original size:16 final size:16
Alignment explanation
Indices: 26323260--26323298 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
26323250 ATTTTGTATA
*
26323260 TATACTATA-ATACTT
1 TATAATATATATACTT
26323275 T-TAATATATATACTT
1 TATAATATATATACTT
26323290 TATAATATA
1 TATAATATA
26323299 AAACTTGTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 6 0.29
15 8 0.38
16 7 0.33
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.49
Consensus pattern (16 bp):
TATAATATATATACTT
Found at i:26323291 original size:14 final size:14
Alignment explanation
Indices: 26323265--26323309 Score: 54
Period size: 15 Copynumber: 3.1 Consensus size: 14
26323255 GTATATATAC
26323265 TATAATACTTTTAA
1 TATAATACTTTTAA
26323279 TATATATACTTTATAA
1 TATA-ATACTTT-TAA
* *
26323295 TATAAAACTTGTAA
1 TATAATACTTTTAA
26323309 T
1 T
26323310 GTCTTTTAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
14 8 0.30
15 12 0.44
16 7 0.26
ACGTcount: A:0.44, C:0.07, G:0.02, T:0.47
Consensus pattern (14 bp):
TATAATACTTTTAA
Found at i:26324240 original size:89 final size:89
Alignment explanation
Indices: 26323929--26324289 Score: 422
Period size: 90 Copynumber: 4.0 Consensus size: 89
26323919 AACTCCTTCA
* * *
26323929 TTTTCCAGCCGGCGACACAAGGCCGAA-GCCTCAGCTCTCTCTAGAACCAACGGCACAGGAACCC
1 TTTTCCAGCCGACGACACAA-GCCGAAGGCC-CAGCTCTCTCTAGAACCGACGGCACAGCAACCC
*
26323993 AGATCTGGTCGACTCTCGCTTTTTCC
64 AGATCTGGTCGTCTCTCGCTTTTTCC
* * * * * * ** *
26324019 TATTCCAGTCGGCGACAGAAGCCTGAAGTCCTAGCTCTCTCTAGAACCGGTGGCACAGGAACCCA
1 TTTTCCAGCCGACGACACAAGCC-GAAGGCCCAGCTCTCTCTAGAACCGACGGCACAGCAACCCA
* *
26324084 GATCTGGTCGGCTCTCGCTTCTTCC
65 GATCTGGTCGTCTCTCGCTTTTTCC
* * *
26324109 TTTTCCAGCCGACTACAGAAGCCCGAAGCCCCAGCTCTCTCTAGAACCGACGGCACAGCAACCCA
1 TTTTCCAGCCGACGACACAAG-CCGAAGGCCCAGCTCTCTCTAGAACCGACGGCACAGCAACCCA
* * *
26324174 GATCTTGTC-TTTCTCCCTTTTTCC
65 GATCTGGTCGTCTCTCGCTTTTTCC
* *
26324198 TTTTCCAACCGACGACACAAGCTCGAAGGCCCAGCTCTCTCTAGAACCGACGGCACAACAACCCA
1 TTTTCCAGCCGACGACACAAGC-CGAAGGCCCAGCTCTCTCTAGAACCGACGGCACAGCAACCCA
** *
26324263 GATCTTCTC-TCTCTCGCTTATTCC
65 GATCTGGTCGTCTCTCGCTTTTTCC
26324287 TTT
1 TTT
26324290 CGCCGGCGGC
Statistics
Matches: 234, Mismatches: 33, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
88 1 0.00
89 95 0.41
90 134 0.57
91 4 0.02
ACGTcount: A:0.22, C:0.36, G:0.19, T:0.24
Consensus pattern (89 bp):
TTTTCCAGCCGACGACACAAGCCGAAGGCCCAGCTCTCTCTAGAACCGACGGCACAGCAACCCAG
ATCTGGTCGTCTCTCGCTTTTTCC
Found at i:26328306 original size:2 final size:2
Alignment explanation
Indices: 26328299--26328324 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
26328289 CCATTCCCTC
26328299 CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT
26328325 AGTGCATCCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:26339181 original size:30 final size:30
Alignment explanation
Indices: 26339147--26339208 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
26339137 CAAGTCTCAG
* *
26339147 TATTTTTATTTTGAATTAAATAAAT-TTTTA
1 TATTTTTATTTTAAATCAAAT-AATCTTTTA
26339177 TATTTTTATTTTAAATCAAATAATCTTTTA
1 TATTTTTATTTTAAATCAAATAATCTTTTA
26339207 TA
1 TA
26339209 ACATATGGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 3 0.10
30 26 0.90
ACGTcount: A:0.37, C:0.03, G:0.02, T:0.58
Consensus pattern (30 bp):
TATTTTTATTTTAAATCAAATAATCTTTTA
Found at i:26339449 original size:28 final size:28
Alignment explanation
Indices: 26339405--26339479 Score: 98
Period size: 28 Copynumber: 2.7 Consensus size: 28
26339395 AATTATTAAT
* *
26339405 TATAAAAATTTATTTAATTTAAATAAAA
1 TATAAAAATTTATTTAAATAAAATAAAA
* *
26339433 TATATAAATTTAATTAAATAAAATAAAA
1 TATAAAAATTTATTTAAATAAAATAAAA
26339461 -AGTAAAAATTTATTTAAAT
1 TA-TAAAAATTTATTTAAAT
26339480 GTTTTAAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
27 1 0.03
28 39 0.98
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.40
Consensus pattern (28 bp):
TATAAAAATTTATTTAAATAAAATAAAA
Found at i:26358349 original size:22 final size:22
Alignment explanation
Indices: 26358322--26358382 Score: 72
Period size: 22 Copynumber: 2.8 Consensus size: 22
26358312 AAAAATAAAA
*
26358322 ATAAAA-ATTATTAATATTTTA-
1 ATAAAATATTATTAAT-TTATAC
*
26358343 ATCAAAATAATATTAATTTATAC
1 AT-AAAATATTATTAATTTATAC
26358366 ATAAAATATTATTAATT
1 ATAAAATATTATTAATT
26358383 AAAATATAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
21 2 0.06
22 22 0.65
23 10 0.29
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.44
Consensus pattern (22 bp):
ATAAAATATTATTAATTTATAC
Found at i:26358387 original size:15 final size:15
Alignment explanation
Indices: 26358367--26358409 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
26358357 AATTTATACA
26358367 TAAAATATTATTAAT
1 TAAAATATTATTAAT
* *
26358382 TAAAATATAAGTAAT
1 TAAAATATTATTAAT
*
26358397 TAAATTA-TATTAA
1 TAAAATATTATTAA
26358410 AATATTGATA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
14 4 0.17
15 19 0.83
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (15 bp):
TAAAATATTATTAAT
Found at i:26358391 original size:22 final size:22
Alignment explanation
Indices: 26358346--26358391 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
26358336 TATTTTAATC
* *
26358346 AAAATAATATTAATTTATACAT
1 AAAATAATATTAATTAAAACAT
* *
26358368 AAAATATTATTAATTAAAATAT
1 AAAATAATATTAATTAAAACAT
26358390 AA
1 AA
26358392 GTAATTAAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (22 bp):
AAAATAATATTAATTAAAACAT
Found at i:26358425 original size:40 final size:37
Alignment explanation
Indices: 26358367--26358472 Score: 95
Period size: 40 Copynumber: 2.6 Consensus size: 37
26358357 AATTTATACA
*
26358367 TAAAATATTATTAATTAAAATATAAGTAATTAAATTATAT
1 TAAAATATTA-TATTTAAAATATAA-TAATTAAATTA-AT
* * *
26358407 TAAAATATTGATATTTAAATTATTAATATTTTAATTAAT
1 TAAAATATT-ATATTTAAAATA-TAATAATTAAATTAAT
*
26358446 TATAAATTATTAATATTTAAAAAATAA
1 TA-AAA-TATT-ATATTTAAAATATAA
26358473 AATAAAAAAT
Statistics
Matches: 55, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
39 4 0.07
40 33 0.60
41 18 0.33
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (37 bp):
TAAAATATTATATTTAAAATATAATAATTAAATTAAT
Found at i:26358447 original size:16 final size:15
Alignment explanation
Indices: 26358406--26358466 Score: 58
Period size: 15 Copynumber: 4.3 Consensus size: 15
26358396 TTAAATTATA
* *
26358406 TTAAAATATTGATAT
1 TTAAATTATTAATAT
26358421 TTAAATTATTAATAT
1 TTAAATTATTAATAT
*
26358436 TT---TAATTAAT-T
1 TTAAATTATTAATAT
*
26358447 ATAAATTATTAATAT
1 TTAAATTATTAATAT
26358462 TTAAA
1 TTAAA
26358467 AAATAAAATA
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
11 2 0.06
12 7 0.19
14 7 0.19
15 20 0.56
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.51
Consensus pattern (15 bp):
TTAAATTATTAATAT
Found at i:26368078 original size:12 final size:12
Alignment explanation
Indices: 26368061--26368095 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
26368051 TTTAAAATTT
26368061 ATAATTATAAAA
1 ATAATTATAAAA
26368073 ATAATTATAAAAA
1 ATAATTAT-AAAA
*
26368086 ATAATAATAA
1 ATAATTATAA
26368096 TATCAAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
ATAATTATAAAA
Found at i:26368118 original size:28 final size:27
Alignment explanation
Indices: 26368053--26368139 Score: 74
Period size: 28 Copynumber: 3.3 Consensus size: 27
26368043 TATTTAAATT
* * *
26368053 TAAAATTT-ATAATTATAAAAATAATTA
1 TAAAATTTAATAATAATATAAAT-ATAA
**
26368080 TAAAAAATAATAATAATATCAAATATAA
1 TAAAATTTAATAATAATAT-AAATATAA
26368108 TAAAATTTAAT-ATAA-AT-AATATACA
1 TAAAATTTAATAATAATATAAATATA-A
26368133 TAAAATT
1 TAAAATT
26368140 CATTATTATA
Statistics
Matches: 50, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
24 6 0.12
25 8 0.16
26 2 0.04
27 10 0.20
28 20 0.40
29 4 0.08
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (27 bp):
TAAAATTTAATAATAATATAAATATAA
Found at i:26370215 original size:19 final size:19
Alignment explanation
Indices: 26370191--26370243 Score: 106
Period size: 19 Copynumber: 2.8 Consensus size: 19
26370181 TGGGCATCTA
26370191 ATATCTCAAGACTCAATTG
1 ATATCTCAAGACTCAATTG
26370210 ATATCTCAAGACTCAATTG
1 ATATCTCAAGACTCAATTG
26370229 ATATCTCAAGACTCA
1 ATATCTCAAGACTCA
26370244 GTTGGATATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 34 1.00
ACGTcount: A:0.38, C:0.23, G:0.09, T:0.30
Consensus pattern (19 bp):
ATATCTCAAGACTCAATTG
Found at i:26375780 original size:92 final size:92
Alignment explanation
Indices: 26375623--26375805 Score: 321
Period size: 92 Copynumber: 2.0 Consensus size: 92
26375613 CACTAACACT
* *
26375623 GGTGACCACTACAGTGAGATTTCTTGTGGTGAGATCCAATGAGATCTTGCCAATAACTATAATGG
1 GGTGACCACTACAGTGAGATTTCTTGTGGTGAGATCCAATGAGATCTTACCAACAACTATAATGG
*
26375688 TCACTGATTAACACCATACAAGATTCA
66 TCACTAATTAACACCATACAAGATTCA
* *
26375715 GGTGACCACTACAGTGAGATTTCTTGTGGTGAGATCCAATGAGATCTTACCAACACCTGTAATGG
1 GGTGACCACTACAGTGAGATTTCTTGTGGTGAGATCCAATGAGATCTTACCAACAACTATAATGG
26375780 TCACTAATTAACACCATACAAGATTC
66 TCACTAATTAACACCATACAAGATTC
26375806 TTGAGCAACA
Statistics
Matches: 86, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
92 86 1.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (92 bp):
GGTGACCACTACAGTGAGATTTCTTGTGGTGAGATCCAATGAGATCTTACCAACAACTATAATGG
TCACTAATTAACACCATACAAGATTCA
Found at i:26387661 original size:27 final size:27
Alignment explanation
Indices: 26387628--26387683 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
26387618 GTCTTATATA
*
26387628 TTTTAT-TTTTAT-TTTTAATATAATT
1 TTTTATATTATATATTTTAATATAATT
* *
26387653 TTTTATATTATATATTTTATTTTAATT
1 TTTTATATTATATATTTTAATATAATT
26387680 TTTT
1 TTTT
26387684 CCTTTAAAGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 6 0.23
26 5 0.19
27 15 0.58
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (27 bp):
TTTTATATTATATATTTTAATATAATT
Found at i:26392157 original size:7 final size:7
Alignment explanation
Indices: 26392145--26392176 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
26392135 AAGCATCTTC
26392145 ATAAATT
1 ATAAATT
26392152 ATAAATT
1 ATAAATT
26392159 ATAAATT
1 ATAAATT
*
26392166 ATAAATC
1 ATAAATT
26392173 ATAA
1 ATAA
26392177 TTTTATTCTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (7 bp):
ATAAATT
Found at i:26394827 original size:14 final size:14
Alignment explanation
Indices: 26394808--26394834 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26394798 TTACGGAAAG
26394808 CCTAAAATCTTTAT
1 CCTAAAATCTTTAT
26394822 CCTAAAATCTTTA
1 CCTAAAATCTTTA
26394835 ATCAAATCAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (14 bp):
CCTAAAATCTTTAT
Found at i:26396053 original size:17 final size:17
Alignment explanation
Indices: 26396033--26396066 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
26396023 CGGCGGTAAA
*
26396033 AATAACTGTAATAACAG
1 AATAACTGTAACAACAG
26396050 AATAACTGTAACAACAG
1 AATAACTGTAACAACAG
26396067 GAAAGAAACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.53, C:0.15, G:0.12, T:0.21
Consensus pattern (17 bp):
AATAACTGTAACAACAG
Found at i:26398913 original size:2 final size:2
Alignment explanation
Indices: 26398908--26398948 Score: 61
Period size: 2 Copynumber: 22.0 Consensus size: 2
26398898 TAAACATCAG
26398908 GA GA GA GA -A GA GA -A GA GA -A GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
26398947 GA
1 GA
26398949 CGACAGACTC
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
1 3 0.08
2 33 0.92
ACGTcount: A:0.54, C:0.00, G:0.46, T:0.00
Consensus pattern (2 bp):
GA
Found at i:26406096 original size:8 final size:8
Alignment explanation
Indices: 26406083--26406125 Score: 50
Period size: 8 Copynumber: 5.1 Consensus size: 8
26406073 TGAAACGTTT
26406083 TTTTTTTA
1 TTTTTTTA
26406091 TTTTTTTA
1 TTTTTTTA
*
26406099 TTTTTTCTC
1 TTTTTT-TA
26406108 TTTTTTTAA
1 TTTTTTT-A
*
26406117 TTTTATTA
1 TTTTTTTA
26406125 T
1 T
26406126 ATTATTTAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
8 17 0.57
9 13 0.43
ACGTcount: A:0.14, C:0.05, G:0.00, T:0.81
Consensus pattern (8 bp):
TTTTTTTA
Found at i:26406170 original size:31 final size:30
Alignment explanation
Indices: 26406113--26406171 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 30
26406103 TTCTCTTTTT
*
26406113 TTAATTTTATTATATTATTTAATTATTTTGA
1 TTAATTTTATTATATTAGTT-ATTATTTTGA
26406144 TTAATTTTTATTATATATAGTT-TTATTT
1 TTAA-TTTTATTATAT-TAGTTATTATTT
26406172 GAGAAATAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
31 10 0.40
32 11 0.44
33 4 0.16
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (30 bp):
TTAATTTTATTATATTAGTTATTATTTTGA
Found at i:26406754 original size:47 final size:48
Alignment explanation
Indices: 26406668--26406763 Score: 122
Period size: 47 Copynumber: 2.0 Consensus size: 48
26406658 GTAATCTAAT
* * * * *
26406668 TGTGTTTAATACTTGGACTTTTATTTGTGTATTTACAATCATTGTTAG
1 TGTGTTTAATACTTGGACTTTTATATCTGCACTTACAATCATGGTTAG
* *
26406716 TGTGTTTATTACTT-GAGTTTTATATCTGCACTTACAATCATGGTTAG
1 TGTGTTTAATACTTGGACTTTTATATCTGCACTTACAATCATGGTTAG
26406763 T
1 T
26406764 AATGGATGAA
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
47 28 0.68
48 13 0.32
ACGTcount: A:0.23, C:0.10, G:0.17, T:0.50
Consensus pattern (48 bp):
TGTGTTTAATACTTGGACTTTTATATCTGCACTTACAATCATGGTTAG
Found at i:26409899 original size:27 final size:27
Alignment explanation
Indices: 26409864--26409933 Score: 115
Period size: 27 Copynumber: 2.6 Consensus size: 27
26409854 TGGAAATTCA
26409864 TTTC-CAACGGAATTCTTTCTGTAGTG
1 TTTCTCAACGGAATTCTTTCTGTAGTG
26409890 TTTCTCAACGGAATTCTTTCTGTAGTG
1 TTTCTCAACGGAATTCTTTCTGTAGTG
* *
26409917 TTTTTCAACAGAATTCT
1 TTTCTCAACGGAATTCT
26409934 AATGGGATAA
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
26 4 0.10
27 37 0.90
ACGTcount: A:0.21, C:0.19, G:0.16, T:0.44
Consensus pattern (27 bp):
TTTCTCAACGGAATTCTTTCTGTAGTG
Found at i:26415422 original size:2 final size:2
Alignment explanation
Indices: 26415415--26415457 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
26415405 CTAACAGATT
26415415 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
26415457 T
1 T
26415458 TATGTTGACA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:26415838 original size:196 final size:195
Alignment explanation
Indices: 26415487--26415838 Score: 430
Period size: 196 Copynumber: 1.8 Consensus size: 195
26415477 GTAAGCGGTT
* **
26415487 AACAAAAGAAAACAAGTTATTTAATTATGTATTCACATTTTACATGCAGAATATAGTTTTTTTAA
1 AACAAAAGAAAACAAGTTATTTAATCATCCATTCACATTTTACATGCAGAATATAGTTTTTTTAA
* * * *
26415552 AGAAGTCTACTTTGAACAACTAATTAGGTAAAAAAAACTGATTGTAACATGCATGCATGCTAACT
66 AGAAATCTACTTCGAACAACTAATTAAGTAAAAAAAACTGACTGTAACATGCATGCATGCTAACT
* *
26415617 TTCATATTGTTTTCTTTCCATCTGTCAAATTAAGTTATGCAAACAAAAATAATACATATACAGTC
131 TTCATATTGTCTTATTTCCATCTGTCAAATTAAGTTATGCAAACAAAAATAATACATATACAGTC
* * *
26415682 AACAAAAGAAAACTAA-TTATTTAATCATCCATTCACGTTTTATGA-GCATAATATA-TATATAT
1 AACAAAAGAAAAC-AAGTTATTTAATCATCCATTCACATTTTA-CATGCAGAATATAGT-T-T-T
* * *
26415744 TTTAAA-AAATCTACTTCGCACAACTAATTAAGT-AAGAAAACATGGCTGTAACATGCATGCATG
61 TTTAAAGAAATCTACTTCGAACAACTAATTAAGTAAAAAAAAC-TGACTGTAACATGCATGCATG
**
26415807 CTAA-TTTC-TATGCTGTCTTATTTTTATCTGTC
125 CTAACTTTCATAT--TGTCTTATTTCCATCTGTC
26415839 GGTTTATGTA
Statistics
Matches: 132, Mismatches: 17, Indels: 15
0.80 0.10 0.09
Matches are distributed among these distances:
194 4 0.03
195 56 0.42
196 65 0.49
197 7 0.05
ACGTcount: A:0.39, C:0.15, G:0.11, T:0.36
Consensus pattern (195 bp):
AACAAAAGAAAACAAGTTATTTAATCATCCATTCACATTTTACATGCAGAATATAGTTTTTTTAA
AGAAATCTACTTCGAACAACTAATTAAGTAAAAAAAACTGACTGTAACATGCATGCATGCTAACT
TTCATATTGTCTTATTTCCATCTGTCAAATTAAGTTATGCAAACAAAAATAATACATATACAGTC
Found at i:26416193 original size:26 final size:25
Alignment explanation
Indices: 26416112--26416194 Score: 71
Period size: 26 Copynumber: 3.3 Consensus size: 25
26416102 AAAAAATTAT
26416112 TATTATTACACGTCATGTCT-AAAAA
1 TATTATTACACGTCATGT-TAAAAAA
* ** *
26416137 CA-TATTACATATTATGGTTAAAAAA
1 TATTATTACACGTCAT-GTTAAAAAA
**
26416162 GGTTATTACACGTCATGTTGAAAAAA
1 TATTATTACACGTCATGTT-AAAAAA
26416188 TATTATT
1 TATTATT
26416195 GTTAATTGCA
Statistics
Matches: 43, Mismatches: 11, Indels: 7
0.70 0.18 0.11
Matches are distributed among these distances:
24 11 0.26
25 11 0.26
26 21 0.49
ACGTcount: A:0.41, C:0.11, G:0.11, T:0.37
Consensus pattern (25 bp):
TATTATTACACGTCATGTTAAAAAA
Found at i:26429916 original size:23 final size:23
Alignment explanation
Indices: 26429890--26429991 Score: 61
Period size: 23 Copynumber: 4.5 Consensus size: 23
26429880 TAAATATTAA
26429890 TAATTTATAATTAATTAAAATAT
1 TAATTTATAATTAATTAAAATAT
* *
26429913 TAA-TAATTAA-TAATTTAAATAT
1 TAATTTA-TAATTAATTAAAATAT
* * * *
26429935 CAATATTTTAA-TATTTAAATTAT
1 TAAT-TTATAATTAATTAAAATAT
* *
26429958 TAATATTGTAATTAA-TAATAT-T
1 TAAT-TTATAATTAATTAAAATAT
*
26429980 TTATTTATAATT
1 TAATTTATAATT
26429992 TAATATTATT
Statistics
Matches: 60, Mismatches: 15, Indels: 10
0.71 0.18 0.12
Matches are distributed among these distances:
21 7 0.12
22 19 0.32
23 31 0.52
24 3 0.05
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (23 bp):
TAATTTATAATTAATTAAAATAT
Found at i:26429963 original size:15 final size:14
Alignment explanation
Indices: 26429942--26429980 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
26429932 TATCAATATT
26429942 TTAATATTTAAATTA
1 TTAATATTT-AATTA
26429957 TTAATATTGTAATTA
1 TTAATATT-TAATTA
*
26429972 ATAATATTT
1 TTAATATTT
26429981 TATTTATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 1 0.05
15 20 0.91
16 1 0.05
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (14 bp):
TTAATATTTAATTA
Found at i:26433135 original size:30 final size:29
Alignment explanation
Indices: 26433037--26433140 Score: 95
Period size: 30 Copynumber: 3.6 Consensus size: 29
26433027 ATTAAAAAAT
* **
26433037 TTAAATAAATCT-TTATA-TTTTATTATGT
1 TTAAATAAAT-TATTATATTTTTATTTTAA
* *
26433065 TTAATTAAATTTTTATATTTTTATTTTAA
1 TTAAATAAATTATTATATTTTTATTTTAA
* *
26433094 TTAAAACAAATTATTGTATTTTTATTTTGAA
1 TT-AAATAAATTATTATATTTTTATTTT-AA
*
26433125 TTAAATAAATTTTTAT
1 TTAAATAAATTATTAT
26433141 CAGTAATAAT
Statistics
Matches: 61, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
27 1 0.02
28 14 0.23
29 10 0.16
30 32 0.52
31 4 0.07
ACGTcount: A:0.38, C:0.02, G:0.03, T:0.58
Consensus pattern (29 bp):
TTAAATAAATTATTATATTTTTATTTTAA
Found at i:26441747 original size:17 final size:18
Alignment explanation
Indices: 26441727--26441765 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
26441717 CCTTTTCTTT
*
26441727 TTTGC-TCACTTTATAAG
1 TTTGCATCAATTTATAAG
*
26441744 TTTGCATCAATTTTTAAG
1 TTTGCATCAATTTATAAG
26441762 TTTG
1 TTTG
26441766 TATATCTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.23, C:0.13, G:0.13, T:0.51
Consensus pattern (18 bp):
TTTGCATCAATTTATAAG
Found at i:26444169 original size:13 final size:14
Alignment explanation
Indices: 26444143--26444175 Score: 59
Period size: 13 Copynumber: 2.4 Consensus size: 14
26444133 CCATTTTCTC
26444143 TTTCTTTTTCTTTT
1 TTTCTTTTTCTTTT
26444157 TTTCTTTTT-TTTT
1 TTTCTTTTTCTTTT
26444170 TTTCTT
1 TTTCTT
26444176 AATTTTCATC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 10 0.53
14 9 0.47
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (14 bp):
TTTCTTTTTCTTTT
Found at i:26451010 original size:8 final size:8
Alignment explanation
Indices: 26450997--26451025 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
26450987 TTGTGATGCT
26450997 AATTTATG
1 AATTTATG
26451005 AATTTATG
1 AATTTATG
26451013 AATTTATG
1 AATTTATG
26451021 AATTT
1 AATTT
26451026 TGTTTTGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.52
Consensus pattern (8 bp):
AATTTATG
Found at i:26452960 original size:51 final size:51
Alignment explanation
Indices: 26452900--26453002 Score: 197
Period size: 51 Copynumber: 2.0 Consensus size: 51
26452890 TTAGATAAAA
26452900 TTAGAGAGCAATTAGAGAAGAAATCTTGACATACAAGGAAAATAGTTACAT
1 TTAGAGAGCAATTAGAGAAGAAATCTTGACATACAAGGAAAATAGTTACAT
*
26452951 TTAGAGAGCAATTAGAGAAGAAATCTTGACATCCAAGGAAAATAGTTACAT
1 TTAGAGAGCAATTAGAGAAGAAATCTTGACATACAAGGAAAATAGTTACAT
26453002 T
1 T
26453003 CTTTATGCAG
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.46, C:0.11, G:0.19, T:0.24
Consensus pattern (51 bp):
TTAGAGAGCAATTAGAGAAGAAATCTTGACATACAAGGAAAATAGTTACAT
Found at i:26459964 original size:25 final size:25
Alignment explanation
Indices: 26459936--26459985 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
26459926 CTTACAATTT
26459936 GGAATATTCAAATTTTATGGAAATA
1 GGAATATTCAAATTTTATGGAAATA
26459961 GGAATATTCAAATTTTATGGAAATA
1 GGAATATTCAAATTTTATGGAAATA
26459986 ATGAAACTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (25 bp):
GGAATATTCAAATTTTATGGAAATA
Found at i:26464145 original size:68 final size:68
Alignment explanation
Indices: 26464031--26464169 Score: 260
Period size: 68 Copynumber: 2.0 Consensus size: 68
26464021 AATCAAGCAG
26464031 AAAGGAAGCAGACGCCATGCAAATGCGAGCAAAAGTTTTGAGACAGATAGTCATAATAGATAACT
1 AAAGGAAGCAGACGCCATGCAAATGCGAGCAAAAGTTTTGAGACAGATAGTCATAATAGATAACT
26464096 GAT
66 GAT
* *
26464099 AAAGGAATCAGACGCCATGCAAATGCGAGCAAAAGTTTTGATACAGATAGTCATAATAGATAACT
1 AAAGGAAGCAGACGCCATGCAAATGCGAGCAAAAGTTTTGAGACAGATAGTCATAATAGATAACT
26464164 GAT
66 GAT
26464167 AAA
1 AAA
26464170 CTCATGCAAG
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 69 1.00
ACGTcount: A:0.44, C:0.14, G:0.22, T:0.20
Consensus pattern (68 bp):
AAAGGAAGCAGACGCCATGCAAATGCGAGCAAAAGTTTTGAGACAGATAGTCATAATAGATAACT
GAT
Found at i:26470077 original size:7 final size:7
Alignment explanation
Indices: 26470065--26470100 Score: 54
Period size: 7 Copynumber: 5.1 Consensus size: 7
26470055 AATAGCTTAT
26470065 ATTGATG
1 ATTGATG
26470072 ATTGATG
1 ATTGATG
26470079 ATTGATG
1 ATTGATG
*
26470086 AATGATG
1 ATTGATG
*
26470093 AATGATG
1 ATTGATG
26470100 A
1 A
26470101 AAGAGTAGTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.36, C:0.00, G:0.28, T:0.36
Consensus pattern (7 bp):
ATTGATG
Found at i:26484158 original size:14 final size:13
Alignment explanation
Indices: 26484137--26484171 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
26484127 GAAGCACAAG
26484137 TCTTTCTCTTTTC
1 TCTTTCTCTTTTC
26484150 TCGTTTCTC-TTTC
1 TC-TTTCTCTTTTC
26484163 TCTTTCTCT
1 TCTTTCTCT
26484172 GAAACTTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
12 6 0.30
13 8 0.40
14 6 0.30
ACGTcount: A:0.00, C:0.31, G:0.03, T:0.66
Consensus pattern (13 bp):
TCTTTCTCTTTTC
Found at i:26484162 original size:6 final size:6
Alignment explanation
Indices: 26484137--26484171 Score: 52
Period size: 6 Copynumber: 5.5 Consensus size: 6
26484127 GAAGCACAAG
26484137 TCTTTC TCTTTTC TCGTTTC TCTTTC TCTTTC TCT
1 TCTTTC TC-TTTC TC-TTTC TCTTTC TCTTTC TCT
26484172 GAAACTTTGA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
6 15 0.56
7 12 0.44
ACGTcount: A:0.00, C:0.31, G:0.03, T:0.66
Consensus pattern (6 bp):
TCTTTC
Found at i:26496291 original size:6 final size:6
Alignment explanation
Indices: 26496271--26496321 Score: 88
Period size: 6 Copynumber: 8.8 Consensus size: 6
26496261 AGCCGCACTC
26496271 ATAT-A ATAT-A ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA
1 ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA
26496317 ATATA
1 ATATA
26496322 TTTCTCCAAC
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
5 9 0.20
6 36 0.80
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (6 bp):
ATATAA
Found at i:26509755 original size:70 final size:70
Alignment explanation
Indices: 26509642--26509778 Score: 256
Period size: 70 Copynumber: 2.0 Consensus size: 70
26509632 TCCACTAAAG
26509642 CCAGTTCTCAAATTCATAATGACTAGTTGTTTCAATCCTAATGAATTCCTATAATACTTACAAGG
1 CCAGTTCTCAAATTCATAATGACTAGTTGTTTCAATCCTAATGAATTCCTATAATACTTACAAGG
26509707 ATTTT
66 ATTTT
* *
26509712 CCAGTTCTCAAATTCATAATGACTAGTTGTTTCAATCCTAATGAATTCTTATAATACTTATAAGG
1 CCAGTTCTCAAATTCATAATGACTAGTTGTTTCAATCCTAATGAATTCCTATAATACTTACAAGG
26509777 AT
66 AT
26509779 GTCAAGTGAT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 65 1.00
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.39
Consensus pattern (70 bp):
CCAGTTCTCAAATTCATAATGACTAGTTGTTTCAATCCTAATGAATTCCTATAATACTTACAAGG
ATTTT
Done.