Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36364294
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2168405 characters in sequence are not A, C, G, or T
File 78 of 91
Found at i:28778855 original size:30 final size:30
Alignment explanation
Indices: 28778819--28778878 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
28778809 GTTTTTTAGC
* *
28778819 ATCCCCAGCCAGTCTGGAATATGGCCACCA
1 ATCCCCAGCCAATCGGGAATATGGCCACCA
* *
28778849 ATCCCCAGCCAATCGGGTATTTGGCCACCA
1 ATCCCCAGCCAATCGGGAATATGGCCACCA
28778879 GTCCTACCAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.25, C:0.37, G:0.20, T:0.18
Consensus pattern (30 bp):
ATCCCCAGCCAATCGGGAATATGGCCACCA
Found at i:28784537 original size:2 final size:2
Alignment explanation
Indices: 28784532--28784557 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
28784522 CGCGCGCGCG
28784532 CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA
28784558 AACAAAAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:28803377 original size:19 final size:18
Alignment explanation
Indices: 28803342--28803388 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
28803332 TTTAATTAAT
28803342 AATAAAATATAAAATATGA
1 AATAAAATATAAAATAT-A
*
28803361 AATAAAATA-AGATATATA
1 AATAAAATATA-AAATATA
28803379 AA-AAAATATA
1 AATAAAATATA
28803389 TAGAGGAATG
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 6 0.24
18 5 0.20
19 14 0.56
ACGTcount: A:0.70, C:0.00, G:0.04, T:0.26
Consensus pattern (18 bp):
AATAAAATATAAAATATA
Found at i:28804481 original size:3 final size:3
Alignment explanation
Indices: 28804465--28804533 Score: 59
Period size: 3 Copynumber: 21.0 Consensus size: 3
28804455 ATTTGTTCCA
*
28804465 ATT A-T ATT ATTT ATT ATTT ATT ATT ACTT ATTT ATT TTT CACTT ATT
1 ATT ATT ATT A-TT ATT A-TT ATT ATT A-TT A-TT ATT ATT -A-TT ATT
28804512 ATT ATT ATT ATT ATTT ATT ATT
1 ATT ATT ATT ATT A-TT ATT ATT
28804534 TTTTTATTTT
Statistics
Matches: 56, Mismatches: 3, Indels: 14
0.77 0.04 0.19
Matches are distributed among these distances:
2 2 0.04
3 36 0.64
4 16 0.29
5 2 0.04
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:28804481 original size:7 final size:7
Alignment explanation
Indices: 28804469--28804534 Score: 66
Period size: 7 Copynumber: 9.1 Consensus size: 7
28804459 GTTCCAATTA
28804469 TATTATT
1 TATTATT
28804476 TATTATT
1 TATTATT
28804483 TATTA-T
1 TATTATT
28804489 TACTTATT
1 TA-TTATT
28804497 TATT-TT
1 TATTATT
28804503 TCACTTA-T
1 T-A-TTATT
28804511 TATTATTAT
1 TATTA-T-T
28804520 TATTATT
1 TATTATT
28804527 TATTATT
1 TATTATT
28804534 T
1 T
28804535 TTTTATTTTT
Statistics
Matches: 51, Mismatches: 0, Indels: 16
0.76 0.00 0.24
Matches are distributed among these distances:
6 9 0.18
7 28 0.55
8 8 0.16
9 6 0.12
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (7 bp):
TATTATT
Found at i:28804543 original size:7 final size:7
Alignment explanation
Indices: 28804522--28804566 Score: 54
Period size: 7 Copynumber: 6.3 Consensus size: 7
28804512 ATTATTATTA
*
28804522 TTATTTA
1 TTATTTT
28804529 TTATTTTT
1 TTA-TTTT
28804537 TTATTTT
1 TTATTTT
* *
28804544 TAAATTT
1 TTATTTT
28804551 TTATTTT
1 TTATTTT
28804558 TTATTTT
1 TTATTTT
28804565 TT
1 TT
28804567 TTTAAAAATA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
7 26 0.81
8 6 0.19
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (7 bp):
TTATTTT
Found at i:28804555 original size:25 final size:25
Alignment explanation
Indices: 28804525--28804572 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
28804515 ATTATTATTA
28804525 TTTATTATTTT-TTTATTTTTAAATT
1 TTTATT-TTTTATTTATTTTTAAATT
*
28804550 TTTATTTTTTATTTTTTTTTAAA
1 TTTATTTTTTATTTATTTTTAAA
28804573 AATATAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (25 bp):
TTTATTTTTTATTTATTTTTAAATT
Found at i:28804555 original size:41 final size:43
Alignment explanation
Indices: 28804465--28804562 Score: 116
Period size: 44 Copynumber: 2.3 Consensus size: 43
28804455 ATTTGTTCCA
* *
28804465 ATTA-TATTATTTATTATTTATTATTACTTATTTATTTTTCACTT
1 ATTATTATTA-TTATTATTTATTATTA-TTATTTATTTTTAAATT
28804509 ATTATTATTATTATTATTTATTATT-TT-TTTATTTTTAAATT
1 ATTATTATTATTATTATTTATTATTATTATTTATTTTTAAATT
*
28804550 TTTATT-TT-TTATT
1 ATTATTATTATTATT
28804563 TTTTTTTAAA
Statistics
Matches: 50, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
39 5 0.10
40 2 0.04
41 17 0.34
42 2 0.04
44 19 0.38
45 5 0.10
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (43 bp):
ATTATTATTATTATTATTTATTATTATTATTTATTTTTAAATT
Found at i:28804967 original size:47 final size:47
Alignment explanation
Indices: 28804899--28805016 Score: 211
Period size: 47 Copynumber: 2.5 Consensus size: 47
28804889 GGCTCTAGGG
*
28804899 ACTCC-CTCAAACGACGTCGTTTAGGCGTCGACCCTTTGAACTTCCC
1 ACTCCACTGAAACGACGTCGTTTAGGCGTCGACCCTTTGAACTTCCC
28804945 ACTCCACTGAAACGACGTCGTTTAGGCGTCGACCCTTTGAACTTCCC
1 ACTCCACTGAAACGACGTCGTTTAGGCGTCGACCCTTTGAACTTCCC
*
28804992 ACTCCACTGAAACGACGCCGTTTAG
1 ACTCCACTGAAACGACGTCGTTTAG
28805017 ACCCTAAACT
Statistics
Matches: 69, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
46 5 0.07
47 64 0.93
ACGTcount: A:0.22, C:0.35, G:0.19, T:0.25
Consensus pattern (47 bp):
ACTCCACTGAAACGACGTCGTTTAGGCGTCGACCCTTTGAACTTCCC
Found at i:28806185 original size:21 final size:22
Alignment explanation
Indices: 28806159--28806212 Score: 76
Period size: 21 Copynumber: 2.5 Consensus size: 22
28806149 ACGCCGACAG
28806159 GGAGAAAGAAGAGAAAGA-GAA
1 GGAGAAAGAAGAGAAAGAGGAA
28806180 GGAGAAAGAA-AGAAAGAGGAA
1 GGAGAAAGAAGAGAAAGAGGAA
**
28806201 AAAGAAAGAAGA
1 GGAGAAAGAAGA
28806213 AGCCAGCGGG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 7 0.24
21 21 0.72
22 1 0.03
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (22 bp):
GGAGAAAGAAGAGAAAGAGGAA
Found at i:28806199 original size:17 final size:19
Alignment explanation
Indices: 28806159--28806212 Score: 67
Period size: 17 Copynumber: 2.8 Consensus size: 19
28806149 ACGCCGACAG
28806159 GGAGAAAGAAGAGAAAGAGAA
1 GGAGAAAGAA-AG-AAGAGAA
28806180 GGAGAAAGAAAGAA-AG-A
1 GGAGAAAGAAAGAAGAGAA
*
28806197 GGAAAAAGAAAGAAGA
1 GGAGAAAGAAAGAAGA
28806213 AGCCAGCGGG
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
17 14 0.45
18 3 0.10
19 2 0.06
20 2 0.06
21 10 0.32
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (19 bp):
GGAGAAAGAAAGAAGAGAA
Found at i:28806559 original size:16 final size:20
Alignment explanation
Indices: 28806521--28806575 Score: 66
Period size: 16 Copynumber: 3.0 Consensus size: 20
28806511 GGGAGAGAAG
28806521 AAGAAAGAAAAAGGAAAAGA
1 AAGAAAGAAAAAGGAAAAGA
28806541 AAGAAAG-AAAA-G-AAA-A
1 AAGAAAGAAAAAGGAAAAGA
28806557 AAGAAA-AAAGAAGGAAAAG
1 AAGAAAGAAA-AAGGAAAAG
28806576 GTTTTGGGTC
Statistics
Matches: 30, Mismatches: 0, Indels: 10
0.75 0.00 0.25
Matches are distributed among these distances:
16 9 0.30
17 5 0.17
18 2 0.07
19 7 0.23
20 7 0.23
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (20 bp):
AAGAAAGAAAAAGGAAAAGA
Found at i:28806841 original size:6 final size:6
Alignment explanation
Indices: 28806832--28806990 Score: 51
Period size: 6 Copynumber: 26.2 Consensus size: 6
28806822 GTATTAGAAG
* * * * * *
28806832 ATAAAA ATAAAA ATAATAA AAAATAA ATAAATG ATAATA TTAAAAA ATCATA
1 ATAAAA ATAAAA ATAA-AA ATAA-AA ATAAA-A ATAAAA AT-AAAA ATAAAA
* * ** * * * *
28806884 ATACAA ATATAA A-AATT ATAAAA AGTAAAA AT-AAA TTATAA AGAAGA
1 ATAAAA ATAAAA ATAAAA ATAAAA A-TAAAA ATAAAA ATAAAA ATAAAA
* * *
28806931 ATAAAGA A-AAAA A-AAAA ATAATA AT-AAA A-AGAA ATAGAA ATAATAA
1 ATAAA-A ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAA-AA
28806977 ATAAATA ATAAAA A
1 ATAAA-A ATAAAA A
28806991 ATATATTTTT
Statistics
Matches: 110, Mismatches: 31, Indels: 24
0.67 0.19 0.15
Matches are distributed among these distances:
5 19 0.17
6 52 0.47
7 39 0.35
ACGTcount: A:0.73, C:0.01, G:0.04, T:0.21
Consensus pattern (6 bp):
ATAAAA
Found at i:28806856 original size:7 final size:7
Alignment explanation
Indices: 28806834--28806993 Score: 51
Period size: 7 Copynumber: 22.0 Consensus size: 7
28806824 ATTAGAAGAT
28806834 AAAAATAA
1 AAAAAT-A
28806842 AAATAATA
1 AAA-AATA
28806850 AAAAATA
1 AAAAATA
28806857 AATAAATGA
1 AA-AAAT-A
* *
28806866 TAATATTA
1 -AAAAATA
28806874 AAAAAT-
1 AAAAATA
* *
28806880 CATAATA
1 AAAAATA
*
28806887 CAAATATA
1 -AAAAATA
28806895 AAAATTATA
1 AAAA--ATA
*
28806904 AAAAGT-
1 AAAAATA
28806910 AAAAATA
1 AAAAATA
**
28806917 AATTATA
1 AAAAATA
* *
28806924 AAGAAGA
1 AAAAATA
* *
28806931 ATAAAGA
1 AAAAATA
28806938 AAAAA-A
1 AAAAATA
28806944 AAAAATA
1 AAAAATA
28806951 ATAATAA-A
1 A-AA-AATA
28806959 AAGAAAT-
1 AA-AAATA
*
28806966 AGAAATA
1 AAAAATA
*
28806973 ATAAATA
1 AAAAATA
*
28806980 AATAATA
1 AAAAATA
28806987 AAAAATA
1 AAAAATA
28806994 TATTTTTTGA
Statistics
Matches: 112, Mismatches: 25, Indels: 31
0.67 0.15 0.18
Matches are distributed among these distances:
6 19 0.17
7 55 0.49
8 21 0.19
9 15 0.13
10 2 0.02
ACGTcount: A:0.73, C:0.01, G:0.04, T:0.21
Consensus pattern (7 bp):
AAAAATA
Found at i:28806944 original size:30 final size:29
Alignment explanation
Indices: 28806909--28806990 Score: 76
Period size: 30 Copynumber: 2.7 Consensus size: 29
28806899 TTATAAAAAG
28806909 TAAAAATAAATTATAAAGAAGAATAAAGAAA
1 TAAAAATAAATTATAAA-AAGAA-AAAGAAA
* *
28806940 -AAAAAAAAATAATAATAAAAAGAAATAGAAA
1 TAAAAATAAAT--T-ATAAAAAGAAAAAGAAA
*
28806971 TAATAAATAAATAATAAAAA
1 TAA-AAATAAATTATAAAAA
28806991 ATATATTTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
30 16 0.38
31 6 0.14
32 8 0.19
33 12 0.29
ACGTcount: A:0.76, C:0.00, G:0.06, T:0.18
Consensus pattern (29 bp):
TAAAAATAAATTATAAAAAGAAAAAGAAA
Found at i:28806958 original size:33 final size:33
Alignment explanation
Indices: 28806910--28806991 Score: 89
Period size: 33 Copynumber: 2.5 Consensus size: 33
28806900 TATAAAAAGT
*
28806910 AAAAATAAATTATAAAGAAGAATAAAGAAA-AA-AA
1 AAAAAT-AATAATAAA-AAGAA-AAAGAAATAATAA
*
28806944 AAAAATAATAATAAAAAGAAATAGAAATAATAA
1 AAAAATAATAATAAAAAGAAAAAGAAATAATAA
*
28806977 ATAAATAATAA-AAAA
1 AAAAATAATAATAAAA
28806992 TATATTTTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
31 6 0.14
32 11 0.26
33 20 0.47
34 6 0.14
ACGTcount: A:0.77, C:0.00, G:0.06, T:0.17
Consensus pattern (33 bp):
AAAAATAATAATAAAAAGAAAAAGAAATAATAA
Found at i:28807192 original size:24 final size:24
Alignment explanation
Indices: 28807143--28807198 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
28807133 AATAATTGTT
*
28807143 TAAAAAAAATATAAAATGAAATAA
1 TAAAAAAAATATAAAATAAAATAA
* *
28807167 TAAAAAGATTATAAAATAATAA-AA
1 TAAAAAAAATATAAAATAA-AATAA
*
28807191 TAATAAAA
1 TAAAAAAA
28807199 TAGCAAATAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
24 24 0.92
25 2 0.08
ACGTcount: A:0.73, C:0.00, G:0.04, T:0.23
Consensus pattern (24 bp):
TAAAAAAAATATAAAATAAAATAA
Found at i:28819668 original size:23 final size:23
Alignment explanation
Indices: 28819640--28819736 Score: 92
Period size: 23 Copynumber: 4.1 Consensus size: 23
28819630 ATTGCTTGAT
28819640 TTACTAACTAATCACGCAATACC
1 TTACTAACTAATCACGCAATACC
28819663 TTACTAAC-AAGTCACGCAATACC
1 TTACTAACTAA-TCACGCAATACC
* *
28819686 -TA-TCAACTAGTCACGCAATGCC
1 TTACT-AACTAATCACGCAATACC
* *
28819708 TTATCAGAAACTAGTCACGCAATACC
1 TTA-C--TAACTAATCACGCAATACC
28819734 TTA
1 TTA
28819737 TAAAAAACTA
Statistics
Matches: 62, Mismatches: 4, Indels: 13
0.78 0.05 0.16
Matches are distributed among these distances:
21 1 0.02
22 18 0.29
23 23 0.37
26 20 0.32
ACGTcount: A:0.37, C:0.29, G:0.09, T:0.25
Consensus pattern (23 bp):
TTACTAACTAATCACGCAATACC
Found at i:28819700 original size:45 final size:47
Alignment explanation
Indices: 28819645--28819734 Score: 121
Period size: 45 Copynumber: 1.9 Consensus size: 47
28819635 TTGATTTACT
*
28819645 AACTAATCACGCAATACCTTA-C-TAACAAGTCACGCAATACCTATC
1 AACTAATCACGCAATACCTTATCAAAACAAGTCACGCAATACCTATC
* * *
28819690 AACTAGTCACGCAATGCCTTATCAGAAACTAGTCACGCAATACCT
1 AACTAATCACGCAATACCTTATCA-AAACAAGTCACGCAATACCT
28819735 TATAAAAAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
45 19 0.50
46 1 0.03
48 18 0.47
ACGTcount: A:0.38, C:0.30, G:0.10, T:0.22
Consensus pattern (47 bp):
AACTAATCACGCAATACCTTATCAAAACAAGTCACGCAATACCTATC
Found at i:28819719 original size:26 final size:25
Alignment explanation
Indices: 28819645--28820176 Score: 228
Period size: 26 Copynumber: 22.4 Consensus size: 25
28819635 TTGATTTACT
* * *
28819645 AACTAATCACGCAATACCTTA-C-T
1 AACTAGTCACGCAATGCCTTATCAA
* *
28819668 AACAAGTCACGCAATACC-TATC--
1 AACTAGTCACGCAATGCCTTATCAA
28819690 AACTAGTCACGCAATGCCTTATCAGA
1 AACTAGTCACGCAATGCCTTATCA-A
* *
28819716 AACTAGTCACGCAATACCTTATAAAA
1 AACTAGTCACGCAATGCCTTAT-CAA
** *
28819742 AACTAACCACGTAAT---TT-TCAA
1 AACTAGTCACGCAATGCCTTATCAA
** *
28819763 AGTTAGTCACTCAATG-CTTATC--
1 AACTAGTCACGCAATGCCTTATCAA
*
28819785 AACTAGTCACGTAATGCCTTATCAGA
1 AACTAGTCACGCAATGCCTTATCA-A
*
28819811 AACTAGTCACGCAATGTCTTATCAAA
1 AACTAGTCACGCAATGCCTTATC-AA
*
28819837 AACTAGTCACGTAATGCC----C-A
1 AACTAGTCACGCAATGCCTTATCAA
* **
28819857 AATTCAGTCACGTTATGCCTGT-T---
1 AACT-AGTCACGCAATGCCT-TATCAA
* *
28819880 AACTAGACACGCAATGCCTTA-C-T
1 AACTAGTCACGCAATGCCTTATCAA
* **
28819903 AACAAGTCACGCAATATC-TATC--
1 AACTAGTCACGCAATGCCTTATCAA
* ** *
28819925 AACTAGTTATACAATGCCTTATTAGA
1 AACTAGTCACGCAATGCCTTATCA-A
* * *
28819951 AACTAATCACGCAATACCTTATAAAA
1 AACTAGTCACGCAATGCCTTAT-CAA
* *
28819977 AACTAGTCACGTAATG---T-CCAA
1 AACTAGTCACGCAATGCCTTATCAA
** *
28819998 AGTTAGTCACTCAATGCC-TATC--
1 AACTAGTCACGCAATGCCTTATCAA
*
28820020 AACTAGTCACGCGATGCCTTATCAGA
1 AACTAGTCACGCAATGCCTTATCA-A
*
28820046 AACTAGTCACGCAATGTCTTATCAAA
1 AACTAGTCACGCAATGCCTTATC-AA
* *
28820072 AACTAGTCACGTAATG-----TCCA
1 AACTAGTCACGCAATGCCTTATCAA
* *
28820092 AATTCAGTCACGCAATGCC-TAT--T
1 AACT-AGTCACGCAATGCCTTATCAA
* *
28820115 AACTAGTCACGCAATACCTCATCAA
1 AACTAGTCACGCAATGCCTTATCAA
* * *
28820140 AAATCAATCACGTAATGCCTTATCAA
1 AACT-AGTCACGCAATGCCTTATCAA
*
28820166 AAATCAGTCAC
1 AACT-AGTCAC
28820177 TTAATGCTCA
Statistics
Matches: 386, Mismatches: 78, Indels: 87
0.70 0.14 0.16
Matches are distributed among these distances:
20 8 0.02
21 52 0.13
22 85 0.22
23 63 0.16
24 3 0.01
25 4 0.01
26 167 0.43
27 4 0.01
ACGTcount: A:0.37, C:0.25, G:0.11, T:0.26
Consensus pattern (25 bp):
AACTAGTCACGCAATGCCTTATCAA
Found at i:28819838 original size:95 final size:95
Alignment explanation
Indices: 28819672--28819900 Score: 280
Period size: 95 Copynumber: 2.4 Consensus size: 95
28819662 CTTACTAACA
28819672 AGTCACGCAATACCTATCAACTAGTCACGCAATGCCTTATCAGAAACTAGTCACGCAATACCTTA
1 AGTCACGCAATACCTATCAACTAGTCACGCAATGCCTTATCAGAAACTAGTCACGCAATACCTTA
28819737 TAAAAAACTAACCACGTAATTTTCAAAGTT
66 TAAAAAACTAACCACGTAATTTTCAAAGTT
* * * * **
28819767 AGTCACTCAATGCTTATCAACTAGTCACGTAATGCCTTATCAGAAACTAGTCACGCAATGTCTTA
1 AGTCACGCAATACCTATCAACTAGTCACGCAATGCCTTATCAGAAACTAGTCACGCAATACCTTA
* ** ***
28819832 TCAAAAACTAGTCACGTAATGCCCAAA-TT
66 TAAAAAACTAACCACGTAATTTTCAAAGTT
** * * * *
28819861 CAGTCACGTTATGCCTGTTAACTAGACACGCAATGCCTTA
1 -AGTCACGCAATACCTATCAACTAGTCACGCAATGCCTTA
28819901 CTAACAAGTC
Statistics
Matches: 113, Mismatches: 20, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
94 2 0.02
95 111 0.98
ACGTcount: A:0.35, C:0.25, G:0.13, T:0.27
Consensus pattern (95 bp):
AGTCACGCAATACCTATCAACTAGTCACGCAATGCCTTATCAGAAACTAGTCACGCAATACCTTA
TAAAAAACTAACCACGTAATTTTCAAAGTT
Found at i:28819911 original size:140 final size:142
Alignment explanation
Indices: 28819767--28820087 Score: 364
Period size: 140 Copynumber: 2.2 Consensus size: 142
28819757 TTTCAAAGTT
* * **
28819767 AGTCACTCAATGCTTATCAACTAGTCACGTAATGCCTTATCAGAAACTAGTCACGCAATGTCTTA
1 AGTCACGCAATGCTTATCAACTAGTCACGTAATGCCTTATCAGAAACTAATCACGCAATACCTTA
* * * *
28819832 TCAAAAACTAGTCACGTAATGCCCAAA-TTCAGTCACGT-TATGCCTGTTAACTAGACACGCAAT
66 TAAAAAACTAGTCACGTAATGCCCAAAGTT-AGTCAC-TCAATGCCTATCAACTAGACACGCAAT
*
28819895 GCCTTA-C-TAACA
129 GCCTTATCAAAACA
* * *** *
28819907 AGTCACGCAAT-ATCTATCAACTAGTTATACAATGCCTTATTAGAAACTAATCACGCAATACCTT
1 AGTCACGCAATGCT-TATCAACTAGTCACGTAATGCCTTATCAGAAACTAATCACGCAATACCTT
* * *
28819971 ATAAAAAACTAGTCACGTAATGTCCAAAGTTAGTCACTCAATGCCTATCAACTAGTCACGCGATG
65 ATAAAAAACTAGTCACGTAATGCCCAAAGTTAGTCACTCAATGCCTATCAACTAGACACGCAATG
*
28820036 CCTTATCAGAAACT
130 CCTTATCA-AAACA
28820050 AGTCACGCAATGTCTTATCAAAAACTAGTCACGTAATG
1 AGTCACGCAATG-CTTATC---AACTAGTCACGTAATG
28820088 TCCAAATTCA
Statistics
Matches: 146, Mismatches: 24, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
139 2 0.01
140 110 0.75
141 3 0.02
143 14 0.10
144 4 0.03
145 1 0.01
147 12 0.08
ACGTcount: A:0.36, C:0.24, G:0.13, T:0.27
Consensus pattern (142 bp):
AGTCACGCAATGCTTATCAACTAGTCACGTAATGCCTTATCAGAAACTAATCACGCAATACCTTA
TAAAAAACTAGTCACGTAATGCCCAAAGTTAGTCACTCAATGCCTATCAACTAGACACGCAATGC
CTTATCAAAACA
Found at i:28820063 original size:235 final size:235
Alignment explanation
Indices: 28819644--28820133 Score: 793
Period size: 235 Copynumber: 2.1 Consensus size: 235
28819634 CTTGATTTAC
*
28819644 TAACTA-ATCACGCAATACCTTACTAACAAGTCACGCAATACCTATCAACTAGTCACGCAATGCC
1 TAACTAGA-CACGCAATACCTTACTAACAAGTCACGCAATACCTATCAACTAGTCACACAATGCC
* * *
28819708 TTATCAGAAACTAGTCACGCAATACCTTATAAAAAACTAACCACGTAATTTTCAAAGTTAGTCAC
65 TTATCAGAAACTAATCACGCAATACCTTATAAAAAACTAACCACGTAATGTCCAAAGTTAGTCAC
* *
28819773 TCAATGCTTATCAACTAGTCACGTAATGCCTTATCAGAAACTAGTCACGCAATGTCTTATCAAAA
130 TCAATGCCTATCAACTAGTCACGCAATGCCTTATCAGAAACTAGTCACGCAATGTCTTATCAAAA
** *
28819838 ACTAGTCACGTAATGCCCAAATTCAGTCACGTTATGCCTGT
195 ACTAGTCACGTAATGCCCAAATTCAGTCACGCAATGCCTAT
* * * *
28819879 TAACTAGACACGCAATGCCTTACTAACAAGTCACGCAATATCTATCAACTAGTTATACAATGCCT
1 TAACTAGACACGCAATACCTTACTAACAAGTCACGCAATACCTATCAACTAGTCACACAATGCCT
* **
28819944 TATTAGAAACTAATCACGCAATACCTTATAAAAAACTAGTCACGTAATGTCCAAAGTTAGTCACT
66 TATCAGAAACTAATCACGCAATACCTTATAAAAAACTAACCACGTAATGTCCAAAGTTAGTCACT
*
28820009 CAATGCCTATCAACTAGTCACGCGATGCCTTATCAGAAACTAGTCACGCAATGTCTTATCAAAAA
131 CAATGCCTATCAACTAGTCACGCAATGCCTTATCAGAAACTAGTCACGCAATGTCTTATCAAAAA
*
28820074 CTAGTCACGTAATGTCCAAATTCAGTCACGCAATGCCTAT
196 CTAGTCACGTAATGCCCAAATTCAGTCACGCAATGCCTAT
*
28820114 TAACTAGTCACGCAATACCT
1 TAACTAGACACGCAATACCT
28820134 CATCAAAAAT
Statistics
Matches: 234, Mismatches: 20, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
235 233 1.00
236 1 0.00
ACGTcount: A:0.36, C:0.25, G:0.12, T:0.27
Consensus pattern (235 bp):
TAACTAGACACGCAATACCTTACTAACAAGTCACGCAATACCTATCAACTAGTCACACAATGCCT
TATCAGAAACTAATCACGCAATACCTTATAAAAAACTAACCACGTAATGTCCAAAGTTAGTCACT
CAATGCCTATCAACTAGTCACGCAATGCCTTATCAGAAACTAGTCACGCAATGTCTTATCAAAAA
CTAGTCACGTAATGCCCAAATTCAGTCACGCAATGCCTAT
Found at i:28820073 original size:95 final size:94
Alignment explanation
Indices: 28819907--28820198 Score: 347
Period size: 95 Copynumber: 3.1 Consensus size: 94
28819897 CTTACTAACA
** * ** * *
28819907 AGTCACGCAATATCTATCAACTAGTTATACAATGCCTTATTAGAAACTAATCACGCAATACCTTA
1 AGTCACGCAATGCCTATCAACTAGTCACGCAATGCCTTATCAGAAACTAATCACGCAATGCCTTA
*
28819972 TAAAAAACTAGTCACGTAATGTCCAAAGTT
66 TCAAAAACTAGTCACGTAATGTCCAAA-TT
* * * *
28820002 AGTCACTCAATGCCTATCAACTAGTCACGCGATGCCTTATCAGAAACTAGTCACGCAATGTCTTA
1 AGTCACGCAATGCCTATCAACTAGTCACGCAATGCCTTATCAGAAACTAATCACGCAATGCCTTA
28820067 TCAAAAACTAGTCACGTAATGTCCAAATT
66 TCAAAAACTAGTCACGTAATGTCCAAATT
* * * * *
28820096 CAGTCACGCAATGCCTATTAACTAGTCACGCAATACCTCATCA-AAAATCAATCACGTAATGCCT
1 -AGTCACGCAATGCCTATCAACTAGTCACGCAATGCCTTATCAGAAACT-AATCACGCAATGCCT
*
28820160 TATCAAAAA-TCAGTCACTTAATG-CTCAAATTT
64 TATCAAAAACT-AGTCACGTAATGTC-CAAA-TT
28820192 AGTCACG
1 AGTCACG
28820199 TAATATCCAA
Statistics
Matches: 170, Mismatches: 22, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
94 8 0.05
95 160 0.94
96 2 0.01
ACGTcount: A:0.37, C:0.24, G:0.12, T:0.27
Consensus pattern (94 bp):
AGTCACGCAATGCCTATCAACTAGTCACGCAATGCCTTATCAGAAACTAATCACGCAATGCCTTA
TCAAAAACTAGTCACGTAATGTCCAAATT
Found at i:28820245 original size:22 final size:22
Alignment explanation
Indices: 28820191--28820253 Score: 76
Period size: 21 Copynumber: 3.0 Consensus size: 22
28820181 TGCTCAAATT
* **
28820191 TAGTCACGTAATATCCAAAGTC
1 TAGTCACGTAATATCTAAAAAC
28820213 -AGTCACGTAATATCTAAAAAC
1 TAGTCACGTAATATCTAAAAAC
*
28820234 TAGTCACATAAT-TCTAAAAA
1 TAGTCACGTAATATCTAAAAA
28820254 ATCACCAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
21 26 0.72
22 10 0.28
ACGTcount: A:0.44, C:0.19, G:0.10, T:0.27
Consensus pattern (22 bp):
TAGTCACGTAATATCTAAAAAC
Found at i:28823485 original size:18 final size:18
Alignment explanation
Indices: 28823449--28823508 Score: 102
Period size: 18 Copynumber: 3.3 Consensus size: 18
28823439 TAATATTCAA
*
28823449 AAAATAAAAGTAAAATTTT
1 AAAATAAAA-TAAATTTTT
28823468 AAAATAAAATAAATTTTT
1 AAAATAAAATAAATTTTT
28823486 AAAATAAAATAAATTTTT
1 AAAATAAAATAAATTTTT
28823504 AAAAT
1 AAAAT
28823509 TTTAGGAAGG
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
18 31 0.77
19 9 0.22
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (18 bp):
AAAATAAAATAAATTTTT
Found at i:28823757 original size:11 final size:11
Alignment explanation
Indices: 28823741--28823765 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
28823731 CAAAAAAGCT
28823741 AAAAGAAAAAG
1 AAAAGAAAAAG
28823752 AAAAGAAAAAG
1 AAAAGAAAAAG
28823763 AAA
1 AAA
28823766 GATTTGAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (11 bp):
AAAAGAAAAAG
Found at i:28830650 original size:14 final size:15
Alignment explanation
Indices: 28830631--28830663 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
28830621 TGAAATTCCA
*
28830631 ACCACAACATA-GCT
1 ACCACAAAATAGGCT
28830645 ACCACAAAATAGGCT
1 ACCACAAAATAGGCT
28830660 ACCA
1 ACCA
28830664 TTGAGATTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.45, C:0.33, G:0.09, T:0.12
Consensus pattern (15 bp):
ACCACAAAATAGGCT
Found at i:28833082 original size:22 final size:22
Alignment explanation
Indices: 28833018--28833088 Score: 60
Period size: 22 Copynumber: 3.2 Consensus size: 22
28833008 GTATAAGTAA
*
28833018 AAATAAAAAT-T-ATTAATATTT
1 AAATAAAAATATAATTAAT-TAT
*
28833039 TAATCAAAAATA-ATATTAAATTAT
1 AAAT-AAAAATATA-ATT-AATTAT
28833063 AAATAAAAATATAATTAATTA-
1 AAATAAAAATATAATTAATTAT
28833084 AAATA
1 AAATA
28833089 TTAATAATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 12
0.73 0.05 0.21
Matches are distributed among these distances:
21 8 0.20
22 11 0.27
23 10 0.24
24 9 0.22
25 3 0.07
ACGTcount: A:0.62, C:0.01, G:0.00, T:0.37
Consensus pattern (22 bp):
AAATAAAAATATAATTAATTAT
Found at i:28833094 original size:27 final size:26
Alignment explanation
Indices: 28833015--28833120 Score: 78
Period size: 27 Copynumber: 4.1 Consensus size: 26
28833005 TGAGTATAAG
* * *
28833015 TAAAAATAAAAATTATTAATATTTTAA
1 TAAAAAT-ATAATTATTAAAATATTAA
* * *
28833042 TCAAAA-ATAA-TATTAAATTATAAA
1 TAAAAATATAATTATTAAAATATTAA
28833066 TAAAAATATAATTAATTAAAATATTAA
1 TAAAAATATAATT-ATTAAAATATTAA
28833093 TAATTAAACTAT-ATTA--AAAATATTAA
1 TAA--AAA-TATAATTATTAAAATATTAA
28833119 TA
1 TA
28833121 TTTAAATTAT
Statistics
Matches: 64, Mismatches: 9, Indels: 13
0.74 0.10 0.15
Matches are distributed among these distances:
24 15 0.23
25 7 0.11
26 13 0.20
27 19 0.30
28 1 0.02
29 6 0.09
30 3 0.05
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (26 bp):
TAAAAATATAATTATTAAAATATTAA
Found at i:28833094 original size:41 final size:40
Alignment explanation
Indices: 28833049--28833168 Score: 109
Period size: 41 Copynumber: 2.9 Consensus size: 40
28833039 TAATCAAAAA
28833049 TAATATTAAATTATAAATAAAAATA-TAATTAATTAAAATAT
1 TAATATTAAATTAT-AATAAAAATATTAA-TAATTAAAATAT
* * * *
28833090 TAATAATTAAACTATATTAAAAATATTAATATTTAAATTAT
1 TAAT-ATTAAATTATAATAAAAATATTAATAATTAAAATAT
* * * *
28833131 TAATAGTTTAATTA-ATTATAAATTATTAATATTTAAAA
1 TAATA-TTAAATTATAATA-AAAATATTAATAATTAAAA
28833169 AATAAAAATA
Statistics
Matches: 67, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
40 5 0.07
41 50 0.75
42 12 0.18
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.43
Consensus pattern (40 bp):
TAATATTAAATTATAATAAAAATATTAATAATTAAAATAT
Found at i:28833108 original size:17 final size:15
Alignment explanation
Indices: 28833068--28833135 Score: 56
Period size: 15 Copynumber: 4.8 Consensus size: 15
28833058 ATTATAAATA
28833068 AAAATA-TAATTAATT
1 AAAATATTAA-TAATT
28833083 AAAATATTAATAATT
1 AAAATATTAATAATT
* *
28833098 AAACTA-T-AT--TA
1 AAAATATTAATAATT
*
28833109 AAAATATTAATATTT
1 AAAATATTAATAATT
*
28833124 AAATTATTAATA
1 AAAATATTAATA
28833136 GTTTAATTAA
Statistics
Matches: 43, Mismatches: 5, Indels: 10
0.74 0.09 0.17
Matches are distributed among these distances:
11 6 0.14
12 1 0.02
13 4 0.09
14 1 0.02
15 28 0.65
16 3 0.07
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.41
Consensus pattern (15 bp):
AAAATATTAATAATT
Found at i:28833115 original size:26 final size:24
Alignment explanation
Indices: 28833075--28833159 Score: 75
Period size: 26 Copynumber: 3.4 Consensus size: 24
28833065 ATAAAAATAT
28833075 AATTAATT-AAAATATTAATAATTA
1 AATT-ATTAAAAATATTAATAATTA
*
28833099 AACTATATTAAAAATATTAATATTTA
1 AA-T-TATTAAAAATATTAATAATTA
* *
28833125 AATTATTAATAGT-TTAATTAATTATA
1 AATTATTAAAAATATTAA-TAA-T-TA
28833151 AATTATTAA
1 AATTATTAA
28833160 TATTTAAAAA
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
23 4 0.08
24 12 0.24
25 6 0.12
26 29 0.57
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (24 bp):
AATTATTAAAAATATTAATAATTA
Found at i:28833131 original size:15 final size:15
Alignment explanation
Indices: 28833103--28833167 Score: 59
Period size: 15 Copynumber: 4.6 Consensus size: 15
28833093 TAATTAAACT
* *
28833103 ATATTAAAAATATTA
1 ATATTTAAATTATTA
28833118 ATATTTAAATTATTA
1 ATATTTAAATTATTA
28833133 ATAGTTT--A--ATTA
1 ATA-TTTAAATTATTA
*
28833145 AT-TATAAATTATTA
1 ATATTTAAATTATTA
28833159 ATATTTAAA
1 ATATTTAAA
28833168 AAATAAAAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
10 2 0.05
12 7 0.17
14 7 0.17
15 21 0.52
16 3 0.08
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.48
Consensus pattern (15 bp):
ATATTTAAATTATTA
Found at i:28833559 original size:23 final size:22
Alignment explanation
Indices: 28833530--28833593 Score: 67
Period size: 23 Copynumber: 2.8 Consensus size: 22
28833520 ACTCTTAAAG
28833530 TTTTAAAATTTTATAATATATAT
1 TTTTAAAATTTTATAAT-TATAT
* *
28833553 TTTTAAATATTTTATGATTTTAT
1 TTTTAAA-ATTTTATAATTATAT
*
28833576 TTTTATAAATATTA-AATT
1 TTTTA-AAATTTTATAATT
28833594 TTTAATATGA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
22 3 0.09
23 21 0.60
24 11 0.31
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (22 bp):
TTTTAAAATTTTATAATTATAT
Found at i:28833579 original size:24 final size:24
Alignment explanation
Indices: 28833530--28833580 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 24
28833520 ACTCTTAAAG
28833530 TTTTAAA-ATTTTATAATATATAT
1 TTTTAAATATTTTATAATATATAT
* *
28833553 TTTTAAATATTTTATGAT-TTTAT
1 TTTTAAATATTTTATAATATATAT
28833576 TTTTA
1 TTTTA
28833581 TAAATATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 16 0.64
24 9 0.36
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (24 bp):
TTTTAAATATTTTATAATATATAT
Found at i:28833610 original size:14 final size:14
Alignment explanation
Indices: 28833576--28833624 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 14
28833566 ATGATTTTAT
28833576 TTTTATAAATATTAAA
1 TTTTATAAATATT--A
28833592 TTTT-TAATATGATTA
1 TTTTATAA-AT-ATTA
28833607 TTTTATAAATATTA
1 TTTTATAAATATTA
28833621 TTTT
1 TTTT
28833625 TACCTCAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
14 8 0.27
15 10 0.33
16 9 0.30
17 3 0.10
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (14 bp):
TTTTATAAATATTA
Found at i:28834556 original size:2 final size:2
Alignment explanation
Indices: 28834549--28834598 Score: 93
Period size: 2 Copynumber: 25.5 Consensus size: 2
28834539 TAATGACATG
28834549 AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
28834590 AT AT AT AT A
1 AT AT AT AT A
28834599 AGTAATTAAA
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 46 0.98
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:28836788 original size:2 final size:2
Alignment explanation
Indices: 28836771--28836833 Score: 87
Period size: 2 Copynumber: 33.0 Consensus size: 2
28836761 TACCTCTACT
*
28836771 TA TA AA TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
28836811 TA TA TA TA -A TA TA TA TA AA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA
28836834 CCCCATTACC
Statistics
Matches: 54, Mismatches: 4, Indels: 6
0.84 0.06 0.09
Matches are distributed among these distances:
1 3 0.06
2 51 0.94
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (2 bp):
TA
Found at i:28837969 original size:7 final size:7
Alignment explanation
Indices: 28837957--28837990 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
28837947 NNNNNNNNNN
28837957 AATAAAA
1 AATAAAA
28837964 AAT-AAA
1 AATAAAA
28837970 AATAAATA
1 AATAAA-A
28837978 AATAAAA
1 AATAAAA
28837985 AATAAA
1 AATAAA
28837991 TAAAAATAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 6 0.24
7 12 0.48
8 7 0.28
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (7 bp):
AATAAAA
Found at i:28837983 original size:21 final size:21
Alignment explanation
Indices: 28837957--28838017 Score: 72
Period size: 21 Copynumber: 2.9 Consensus size: 21
28837947 NNNNNNNNNN
28837957 AATAAAAAATAAA-AATAAATA
1 AATAAAAAATAAATAA-AAATA
28837978 AATAAAAAATAAATAAAAAT-
1 AATAAAAAATAAATAAAAATA
* *
28837998 AATATAATATAAATTAAAAA
1 AATAAAAAATAAA-TAAAAA
28838018 AATTTTAAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
20 11 0.31
21 23 0.64
22 2 0.06
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (21 bp):
AATAAAAAATAAATAAAAATA
Found at i:28847313 original size:2 final size:2
Alignment explanation
Indices: 28847306--28847380 Score: 127
Period size: 2 Copynumber: 38.0 Consensus size: 2
28847296 TCACGTGCAA
28847306 AT AT AT AT AT AT AT A- AT AT AT AT AT -T AT AT AT AT AT AT NAT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT
28847347 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
28847381 TTCTCTTCTT
Statistics
Matches: 70, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
1 2 0.03
2 66 0.94
3 2 0.03
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:28848230 original size:2 final size:2
Alignment explanation
Indices: 28848215--28848251 Score: 58
Period size: 2 Copynumber: 18.5 Consensus size: 2
28848205 TATAACTTGA
28848215 AT AT AT ACT A- AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
28848252 GGATTTTTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 1 0.03
2 30 0.91
3 2 0.06
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:28878686 original size:28 final size:30
Alignment explanation
Indices: 28878630--28878687 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
28878620 ATTTGTTTAG
*
28878630 ATGATATTTATAAAAAAATAAATTATTAAA
1 ATGACATTTATAAAAAAATAAATTATTAAA
* *
28878660 ATGACATTTATGAAAGAA-AAA-TATTAAA
1 ATGACATTTATAAAAAAATAAATTATTAAA
28878688 GAGTGTTTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 7 0.28
29 3 0.12
30 15 0.60
ACGTcount: A:0.59, C:0.02, G:0.07, T:0.33
Consensus pattern (30 bp):
ATGACATTTATAAAAAAATAAATTATTAAA
Found at i:28896512 original size:2 final size:2
Alignment explanation
Indices: 28896505--28896533 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
28896495 TAGTTGCACT
28896505 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
28896534 TATATATTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:28902471 original size:75 final size:75
Alignment explanation
Indices: 28902344--28902486 Score: 207
Period size: 75 Copynumber: 1.9 Consensus size: 75
28902334 TTTTTCCCCT
* ** *
28902344 TTCTTGGGCCCCAATAAACAAATTTTGCAGCTGAGAAGTATGTTGTTTATGTGAT-CTTCGGCCA
1 TTCTTCGGCCCCAATAAACAAATTTTGCAGCTGAGAAGTATGTAATTCATGTGATCCTT-GGCCA
28902408 ATTCACATCAG
65 ATTCACATCAG
* * *
28902419 TTCTTCGGCTCCAATAAACGAATTTTGCGGCTGAGAAGTATGTAATTCATGTGATCCTTGGCCAA
1 TTCTTCGGCCCCAATAAACAAATTTTGCAGCTGAGAAGTATGTAATTCATGTGATCCTTGGCCAA
28902484 TTC
66 TTC
28902487 GCATTAGAAG
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
75 57 0.95
76 3 0.05
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (75 bp):
TTCTTCGGCCCCAATAAACAAATTTTGCAGCTGAGAAGTATGTAATTCATGTGATCCTTGGCCAA
TTCACATCAG
Found at i:28909657 original size:49 final size:50
Alignment explanation
Indices: 28909585--28909681 Score: 142
Period size: 49 Copynumber: 2.0 Consensus size: 50
28909575 TTCTGATTAC
*
28909585 GATAAAAGAATGATCATTGAGAGC-AAGGCATGAATGATTGCTGGAGAAA
1 GATAAAAGAACGATCATTGAGAGCAAAGGCATGAATGATTGCTGGAGAAA
* * * *
28909634 GATAAAAGAACGTTCGTTGAGAGCAAAGGTATGAATGGTTGCTGGAGA
1 GATAAAAGAACGATCATTGAGAGCAAAGGCATGAATGATTGCTGGAGA
28909682 TTAGTTATTT
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
49 21 0.50
50 21 0.50
ACGTcount: A:0.39, C:0.08, G:0.31, T:0.22
Consensus pattern (50 bp):
GATAAAAGAACGATCATTGAGAGCAAAGGCATGAATGATTGCTGGAGAAA
Found at i:28930666 original size:29 final size:29
Alignment explanation
Indices: 28930633--28930688 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
28930623 ATTTAGAAAA
* *
28930633 ATTCAAATAAATCTTTATTCTTTTATTAC
1 ATTCAAATAAATCCTTATACTTTTATTAC
* *
28930662 ATTCAATTAAGTCCTTATACTTTTATT
1 ATTCAAATAAATCCTTATACTTTTATT
28930689 TTGAGTCAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.32, C:0.14, G:0.02, T:0.52
Consensus pattern (29 bp):
ATTCAAATAAATCCTTATACTTTTATTAC
Found at i:28930715 original size:30 final size:31
Alignment explanation
Indices: 28930679--28930738 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 31
28930669 TAAGTCCTTA
* *
28930679 TACTTTTATTTTGAGTCAAATAAA-CTCTTG
1 TACTTTTATTTTGAGGCAAAAAAAGCTCTTG
28930709 TACTTTTATTTTGAGGCAAAAAAAGCTCTT
1 TACTTTTATTTTGAGGCAAAAAAAGCTCTT
28930739 ATGACTAATG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.32, C:0.13, G:0.12, T:0.43
Consensus pattern (31 bp):
TACTTTTATTTTGAGGCAAAAAAAGCTCTTG
Found at i:28948230 original size:2 final size:2
Alignment explanation
Indices: 28948223--28948258 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
28948213 TTTAAAAGGA
28948223 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
28948259 CAGAAATCAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:28950064 original size:22 final size:21
Alignment explanation
Indices: 28950035--28950079 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
28950025 TAATTGCAAC
*
28950035 AAAATACATAAATTCATATAT
1 AAAATACATAAATACATATAT
28950056 AAAACTACATAAATACATATAT
1 AAAA-TACATAAATACATATAT
28950078 AA
1 AA
28950080 TAAGAATGGA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.60, C:0.11, G:0.00, T:0.29
Consensus pattern (21 bp):
AAAATACATAAATACATATAT
Found at i:28980817 original size:22 final size:23
Alignment explanation
Indices: 28980778--28980820 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
28980768 AAATTAAATT
28980778 AACAAATTAAAATTAATTTTATA
1 AACAAATTAAAATTAATTTTATA
28980801 AACAAA-T-AAATTAAATTTTA
1 AACAAATTAAAATT-AATTTTA
28980821 AAATCATCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.26
22 8 0.42
23 6 0.32
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (23 bp):
AACAAATTAAAATTAATTTTATA
Found at i:28986300 original size:21 final size:20
Alignment explanation
Indices: 28986231--28986301 Score: 60
Period size: 22 Copynumber: 3.5 Consensus size: 20
28986221 GATAAAAAAG
28986231 AATAAA-AATTAAAAATTTTTAA
1 AATAAATAATT-AAAA-TTTT-A
*
28986253 AATAAATATATT-GAA-TTTA
1 AATAAATA-ATTAAAATTTTA
28986272 AA-AAATAATTAAAATTTTA
1 AATAAATAATTAAAATTTTA
28986291 TAATAAATAAT
1 -AATAAATAAT
28986302 AATTTTATAT
Statistics
Matches: 41, Mismatches: 2, Indels: 13
0.73 0.04 0.23
Matches are distributed among these distances:
17 3 0.07
18 7 0.17
19 7 0.17
20 5 0.12
21 7 0.17
22 8 0.20
23 1 0.02
24 3 0.07
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.38
Consensus pattern (20 bp):
AATAAATAATTAAAATTTTA
Found at i:28986305 original size:18 final size:17
Alignment explanation
Indices: 28986275--28986310 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
28986265 GAATTTAAAA
*
28986275 AATAATTAAAATTTTAT
1 AATAAATAAAATTTTAT
28986292 AATAAATAATAATTTTAT
1 AATAAATAA-AATTTTAT
28986310 A
1 A
28986311 TAACATGTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
AATAAATAAAATTTTAT
Found at i:28986820 original size:28 final size:29
Alignment explanation
Indices: 28986762--28986820 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 29
28986752 TATTTAAATT
* *
28986762 TAAAATACTAAATATAAAACTATAATGTA
1 TAAAATACTAAATATAAAACTACAATATA
*
28986791 TAAAATA-TAAATAGTTAAA-TACAATATA
1 TAAAATACTAAATA-TAAAACTACAATATA
28986819 TA
1 TA
28986821 GGATTTAGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
28 15 0.58
29 11 0.42
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.32
Consensus pattern (29 bp):
TAAAATACTAAATATAAAACTACAATATA
Found at i:28987856 original size:21 final size:20
Alignment explanation
Indices: 28987832--28987883 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 20
28987822 AAAATATATA
* *
28987832 ATAAATAAATAATTTTAAAT
1 ATAAATAAATAAATTAAAAT
28987852 -TATAATAAAATAAATTAAAAT
1 ATA-AAT-AAATAAATTAAAAT
*
28987873 ATAAAAAAATA
1 ATAAATAAATA
28987884 TATAATAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
19 2 0.08
20 8 0.31
21 14 0.54
22 2 0.08
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAAATAAATAAATTAAAAT
Found at i:28987867 original size:15 final size:15
Alignment explanation
Indices: 28987847--28987893 Score: 58
Period size: 15 Copynumber: 3.0 Consensus size: 15
28987837 TAAATAATTT
28987847 TAAATTATAATAAAA
1 TAAATTATAATAAAA
*
28987862 TAAATTAAAATATAAA
1 TAAATTATAATA-AAA
*
28987878 AAAATATATAATAAAA
1 TAAAT-TATAATAAAA
28987894 AATTTTAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
15 11 0.41
16 10 0.37
17 6 0.22
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
TAAATTATAATAAAA
Found at i:28987869 original size:20 final size:20
Alignment explanation
Indices: 28987832--28987883 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
28987822 AAAATATATA
* * *
28987832 ATAAATAAATAATTTTAAATT
1 ATAAAAAAATAA-ATTAAAAT
*
28987853 ATAATAAAATAAATTAAAAT
1 ATAAAAAAATAAATTAAAAT
28987873 ATAAAAAAATA
1 ATAAAAAAATA
28987884 TATAATAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 16 0.62
21 10 0.38
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAAAAAAATAAATTAAAAT
Found at i:28987878 original size:17 final size:18
Alignment explanation
Indices: 28987856--28987896 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
28987846 TTAAATTATA
28987856 ATAAAATAAAT-TAAAAT
1 ATAAAATAAATATAAAAT
*
28987873 ATAAAA-AAATATATAAT
1 ATAAAATAAATATAAAAT
*
28987890 AAAAAAT
1 ATAAAAT
28987897 TTTAAAACTT
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
16 4 0.20
17 16 0.80
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (18 bp):
ATAAAATAAATATAAAAT
Found at i:28988980 original size:68 final size:68
Alignment explanation
Indices: 28988866--28989475 Score: 972
Period size: 68 Copynumber: 9.0 Consensus size: 68
28988856 CTCTAAGATC
* * *
28988866 ATTGCAAGAGCCAATCCCAAAATATGTGATGTAAGACACTCTAATAATTATATGTATGTATGTAT
1 ATTGTAAGAGCCAATCCCAATATATGTGATGTAATACACTCTAATAATTATATGTATGTATGTAT
*
28988931 AAA
66 AAT
* *
28988934 ATTGTAAGAGTCAATCCCAATATATGTGATGTAATACACTCTAATAATTATATGCATG--TGTAT
1 ATTGTAAGAGCCAATCCCAATATATGTGATGTAATACACTCTAATAATTATATGTATGTATGTAT
*
28988997 AAA
66 AAT
* *
28989000 ATTGTAAGAGCCAATCCCAATATATGTGATGTAATACACTCTTATAATTATATGTGTGTATGTAT
1 ATTGTAAGAGCCAATCCCAATATATGTGATGTAATACACTCTAATAATTATATGTATGTATGTAT
28989065 AAT
66 AAT
*
28989068 ATTGTAAGAGCCAATCCCAATATATGTGATGTAATACACTCTAATAATTATATGTGTGTATGTAT
1 ATTGTAAGAGCCAATCCCAATATATGTGATGTAATACACTCTAATAATTATATGTATGTATGTAT
28989133 AAT
66 AAT
* * * *
28989136 ATTGTAAGAGCCAATCCCAAAATATGTGATGTAAGACACTTTAATAATTATATGCATGTATGTAT
1 ATTGTAAGAGCCAATCCCAATATATGTGATGTAATACACTCTAATAATTATATGTATGTATGTAT
*
28989201 AAA
66 AAT
* * *
28989204 ATTGTAAGAGCCAATCCCAATATATGTGATGTAATACACTCTAATAATTATATGCATGTGTGTTT
1 ATTGTAAGAGCCAATCCCAATATATGTGATGTAATACACTCTAATAATTATATGTATGTATGTAT
28989269 AAT
66 AAT
* * *
28989272 ATTGTAAGAGCCAATCCCAATATATGTGATGTAATACACTCTTATAATTATATGTGTGCATGTAT
1 ATTGTAAGAGCCAATCCCAATATATGTGATGTAATACACTCTAATAATTATATGTATGTATGTAT
28989337 AAT
66 AAT
* * *
28989340 ATTGTAAGAACCAATCCCAAAATATGTGATGTAATACACTCTAATAATTATATGTGTGTATGTAT
1 ATTGTAAGAGCCAATCCCAATATATGTGATGTAATACACTCTAATAATTATATGTATGTATGTAT
28989405 AAT
66 AAT
* *
28989408 ATTGTAAGAGCCAATCCCAAAATATGTGATGTAATACACGCTAATAATTATATGTATGTATGTAT
1 ATTGTAAGAGCCAATCCCAATATATGTGATGTAATACACTCTAATAATTATATGTATGTATGTAT
28989473 AAT
66 AAT
28989476 GTGTATCTAT
Statistics
Matches: 504, Mismatches: 36, Indels: 4
0.93 0.07 0.01
Matches are distributed among these distances:
66 62 0.12
68 442 0.88
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.35
Consensus pattern (68 bp):
ATTGTAAGAGCCAATCCCAATATATGTGATGTAATACACTCTAATAATTATATGTATGTATGTAT
AAT
Found at i:28990587 original size:54 final size:54
Alignment explanation
Indices: 28990505--28990612 Score: 207
Period size: 54 Copynumber: 2.0 Consensus size: 54
28990495 AGTTGAATGA
28990505 CAATTACAAAAGAGAATATGAAATGGCCGCCCAGCCAAGGAATTAACATAAGTT
1 CAATTACAAAAGAGAATATGAAATGGCCGCCCAGCCAAGGAATTAACATAAGTT
*
28990559 CAATTACAAAAGAGAATATGAAATGGCCGCCCAGCCAAGGAATTAACATGAGTT
1 CAATTACAAAAGAGAATATGAAATGGCCGCCCAGCCAAGGAATTAACATAAGTT
28990613 ATGTACCGAA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.44, C:0.19, G:0.19, T:0.19
Consensus pattern (54 bp):
CAATTACAAAAGAGAATATGAAATGGCCGCCCAGCCAAGGAATTAACATAAGTT
Found at i:28998624 original size:31 final size:31
Alignment explanation
Indices: 28998566--28998632 Score: 75
Period size: 32 Copynumber: 2.2 Consensus size: 31
28998556 TTAATAAAAG
* *
28998566 AAAAAATTGTGACTGTTGAAAATTAAATTAAA
1 AAAAAATTGTGAATGTTGAAAAATAAA-TAAA
28998598 AAAAAATTGT-ATATGTT-AAAAATAAATAAA
1 AAAAAATTGTGA-ATGTTGAAAAATAAATAAA
*
28998628 TAAAA
1 AAAAA
28998633 TTAAAAAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
30 8 0.26
31 9 0.29
32 14 0.45
ACGTcount: A:0.60, C:0.01, G:0.09, T:0.30
Consensus pattern (31 bp):
AAAAAATTGTGAATGTTGAAAAATAAATAAA
Found at i:28999597 original size:20 final size:20
Alignment explanation
Indices: 28999572--28999619 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
28999562 TATAATTGTA
28999572 TCCTCCATTATAGACAAACT
1 TCCTCCATTATAGACAAACT
28999592 TCCTCCATTATAGACAAACT
1 TCCTCCATTATAGACAAACT
28999612 TCCTCCAT
1 TCCTCCAT
28999620 CATGGAAAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.31, C:0.33, G:0.04, T:0.31
Consensus pattern (20 bp):
TCCTCCATTATAGACAAACT
Found at i:29004820 original size:48 final size:48
Alignment explanation
Indices: 29004727--29004859 Score: 128
Period size: 48 Copynumber: 2.8 Consensus size: 48
29004717 AGGACCCAAA
* * * * * *
29004727 CCATCAGGTGTCAATGATCCCGAACCCAACCTCGAACC-CAACCCCA-T
1 CCATCTGGAGTCAATGATCCAGAACCCAGCCTTGAACCTC-GCCCCAGT
* *
29004774 ACCGTCTGGAGTCACA-GATCCAGAACCCAGTCTTGAACCTCGCCCCAGT
1 -CCATCTGGAGTCA-ATGATCCAGAACCCAGCCTTGAACCTCGCCCCAGT
* *
29004823 CCATCTGGCGTCAATGATCCAGAACCTAGCCTTGAAC
1 CCATCTGGAGTCAATGATCCAGAACCCAGCCTTGAAC
29004860 ACCATTTGCG
Statistics
Matches: 69, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
47 1 0.01
48 65 0.94
49 3 0.04
ACGTcount: A:0.27, C:0.38, G:0.17, T:0.18
Consensus pattern (48 bp):
CCATCTGGAGTCAATGATCCAGAACCCAGCCTTGAACCTCGCCCCAGT
Found at i:29020603 original size:29 final size:28
Alignment explanation
Indices: 29020562--29020735 Score: 177
Period size: 28 Copynumber: 5.9 Consensus size: 28
29020552 GACAGCTTTG
29020562 ACATGTTTGTCTTAATTTAGACAAGAAA
1 ACATGTTTGTCTTAATTTAGACAAGAAA
*
29020590 ACATGTTTGGTCTTAATTTAGACAAAAAA
1 ACATGTTT-GTCTTAATTTAGACAAGAAA
* *
29020619 ATATGTTTGCCTTAATTTAAGACAAGAAAAA
1 ACATGTTTGTCTTAATTT-AGACAAG--AAA
* * *
29020650 AAATTTTTGTCTTAATTTAGTCAAGAAA
1 ACATGTTTGTCTTAATTTAGACAAGAAA
* * *
29020678 ACATATTTTTCTCAATTTAGACAAGATAAA
1 ACATGTTTGTCTTAATTTAGACAAG--AAA
* *
29020708 ATATTTTTTGTCTTAATTATAGACAAGA
1 ACA-TGTTTGTCTTAATT-TAGACAAGA
29020736 GTTGTCTTAA
Statistics
Matches: 121, Mismatches: 17, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
28 40 0.33
29 32 0.26
30 12 0.10
31 29 0.24
32 8 0.07
ACGTcount: A:0.41, C:0.10, G:0.11, T:0.38
Consensus pattern (28 bp):
ACATGTTTGTCTTAATTTAGACAAGAAA
Found at i:29020695 original size:59 final size:59
Alignment explanation
Indices: 29020564--29020735 Score: 183
Period size: 59 Copynumber: 2.9 Consensus size: 59
29020554 CAGCTTTGAC
* * * *
29020564 ATGTTTGTCTTAATTTAGACAAG--AAAACATGTTTGGTCTTAATTTAGACAA-AAAAAT
1 ATGTTTGCCTCAATTTAGACAAGAAAAAAAAT-TTTTGTCTTAATTTAGACAAGAAAAAT
* *
29020621 ATGTTTGCCTTAATTTAAGACAAGAAAAAAAATTTTTGTCTTAATTTAGTCAAGAAAACAT
1 ATGTTTGCCTCAATTT-AGACAAGAAAAAAAATTTTTGTCTTAATTTAGACAAGAAAA-AT
* * *
29020682 AT-TTT-TCTCAATTTAGACAAGATAAAATATTTTTTGTCTTAATTATAGACAAGA
1 ATGTTTGCCTCAATTTAGACAAGA-AAAAAAATTTTTGTCTTAATT-TAGACAAGA
29020736 GTTGTCTTAA
Statistics
Matches: 99, Mismatches: 9, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
57 15 0.15
58 15 0.15
59 44 0.44
60 21 0.21
61 4 0.04
ACGTcount: A:0.41, C:0.09, G:0.12, T:0.38
Consensus pattern (59 bp):
ATGTTTGCCTCAATTTAGACAAGAAAAAAAATTTTTGTCTTAATTTAGACAAGAAAAAT
Found at i:29022653 original size:24 final size:24
Alignment explanation
Indices: 29022624--29022669 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
29022614 CAAGCTATTG
29022624 TTCCTACAATCAAG-TTCTTCTCTA
1 TTCCTACAATCAAGCTT-TTCTCTA
*
29022648 TTCCTATAATCAAGCTTTTCTC
1 TTCCTACAATCAAGCTTTTCTC
29022670 ATAATGAGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 18 0.90
25 2 0.10
ACGTcount: A:0.24, C:0.28, G:0.04, T:0.43
Consensus pattern (24 bp):
TTCCTACAATCAAGCTTTTCTCTA
Found at i:29024063 original size:22 final size:22
Alignment explanation
Indices: 29024009--29024066 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
29023999 TTAAGCATTA
* *
29024009 CGTGATTG-GTTTTAGGTATTG
1 CGTGATTGATTTTTAGATATTG
*
29024030 CGTAACTT-ATTTTTAGATATTG
1 CGTGA-TTGATTTTTAGATATTG
29024052 CGTGATTGATTTTTA
1 CGTGATTGATTTTTA
29024067 AACAATGCCT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
21 6 0.20
22 24 0.80
ACGTcount: A:0.21, C:0.07, G:0.22, T:0.50
Consensus pattern (22 bp):
CGTGATTGATTTTTAGATATTG
Found at i:29024103 original size:23 final size:23
Alignment explanation
Indices: 29024077--29024161 Score: 89
Period size: 23 Copynumber: 3.7 Consensus size: 23
29024067 AACAATGCCT
* *
29024077 AAGTCACACGATGTCTTACTAAC
1 AAGTCACACAATGCCTTACTAAC
*
29024100 AAGTCACGCAATGCCTTACTAAC
1 AAGTCACACAATGCCTTACTAAC
** * *
29024123 AAGTCACGTAATGCCTTACTGAT
1 AAGTCACACAATGCCTTACTAAC
**
29024146 AAGTCATGCAATGCCT
1 AAGTCACACAATGCCT
29024162 ATCAACTAGT
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 54 1.00
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (23 bp):
AAGTCACACAATGCCTTACTAAC
Found at i:29024178 original size:22 final size:22
Alignment explanation
Indices: 29024147--29024227 Score: 72
Period size: 22 Copynumber: 3.6 Consensus size: 22
29024137 CTTACTGATA
*
29024147 AGTCATGCAATGCCTATCAACT
1 AGTCACGCAATGCCTATCAACT
* *
29024169 AGTCACGCAATGTCATATCAACC
1 AGTCACGCAATG-CCTATCAACT
* * * **
29024192 AGTCACACAATACTTAAAAACT
1 AGTCACGCAATGCCTATCAACT
*
29024214 AGTCACGTAATGCC
1 AGTCACGCAATGCC
29024228 CAAAAATCAC
Statistics
Matches: 45, Mismatches: 13, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
22 27 0.60
23 18 0.40
ACGTcount: A:0.37, C:0.27, G:0.12, T:0.23
Consensus pattern (22 bp):
AGTCACGCAATGCCTATCAACT
Found at i:29024195 original size:23 final size:22
Alignment explanation
Indices: 29024147--29024202 Score: 67
Period size: 23 Copynumber: 2.5 Consensus size: 22
29024137 CTTACTGATA
* * *
29024147 AGTCATGCAATGCCTATCAACT
1 AGTCACGCAATGCATATCAACC
29024169 AGTCACGCAATGTCATATCAACC
1 AGTCACGCAATG-CATATCAACC
*
29024192 AGTCACACAAT
1 AGTCACGCAAT
29024203 ACTTAAAAAC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 11 0.38
23 18 0.62
ACGTcount: A:0.36, C:0.29, G:0.12, T:0.23
Consensus pattern (22 bp):
AGTCACGCAATGCATATCAACC
Found at i:29025391 original size:2 final size:2
Alignment explanation
Indices: 29025379--29025427 Score: 91
Period size: 2 Copynumber: 25.0 Consensus size: 2
29025369 TTTCTCTAGT
29025379 TA TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
29025420 TA TA TA TA
1 TA TA TA TA
29025428 AAGTGAAAGA
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 45 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:29025928 original size:21 final size:23
Alignment explanation
Indices: 29025902--29025953 Score: 65
Period size: 21 Copynumber: 2.3 Consensus size: 23
29025892 TGGGTTCTTC
29025902 TTTTTTGTGTTGG-ATTTGT-AT
1 TTTTTTGTGTTGGCATTTGTCAT
*
29025923 TTTTTTG-GTTGGCTTTTGTCAT
1 TTTTTTGTGTTGGCATTTGTCAT
29025945 TTTCTTTGT
1 TTT-TTTGT
29025954 TTAATTCATT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 5 0.19
21 12 0.46
22 5 0.19
23 4 0.15
ACGTcount: A:0.06, C:0.06, G:0.21, T:0.67
Consensus pattern (23 bp):
TTTTTTGTGTTGGCATTTGTCAT
Found at i:29031135 original size:19 final size:20
Alignment explanation
Indices: 29031111--29031148 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
29031101 ATTTAAAAAT
29031111 ATTATTTATTA-TAATTTTA
1 ATTATTTATTATTAATTTTA
*
29031130 ATTATTTTTTATTAATTTT
1 ATTATTTATTATTAATTTT
29031149 TAATATGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (20 bp):
ATTATTTATTATTAATTTTA
Found at i:29031140 original size:22 final size:21
Alignment explanation
Indices: 29031110--29031152 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
29031100 AATTTAAAAA
29031110 TATTATTTATTATAATTTTAAT
1 TATTATTTATTA-AATTTTAAT
* *
29031132 TATTTTTTATTAATTTTTAAT
1 TATTATTTATTAAATTTTAAT
29031153 ATGATTTGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (21 bp):
TATTATTTATTAAATTTTAAT
Found at i:29031568 original size:22 final size:21
Alignment explanation
Indices: 29031505--29031568 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 21
29031495 GTATTATTGG
* *
29031505 TTTTTAGATATTATGTCACTAA
1 TTTTTAG-TATTATATGACTAA
*
29031527 TTTTTAAGTATTATAAGACTAA
1 TTTTT-AGTATTATATGACTAA
29031549 TTTTTATGTATTATATGACT
1 TTTTTA-GTATTATATGACT
29031569 TAATCATTGT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.92
23 2 0.06
ACGTcount: A:0.33, C:0.06, G:0.09, T:0.52
Consensus pattern (21 bp):
TTTTTAGTATTATATGACTAA
Found at i:29031726 original size:22 final size:22
Alignment explanation
Indices: 29031648--29031727 Score: 81
Period size: 22 Copynumber: 3.6 Consensus size: 22
29031638 ACAATGCCTA
* *
29031648 AGTCACACAATGCTTA-CAAACC
1 AGTCACGCAATACTTATC-AACC
** * *
29031670 AGTCACGCAACGCCTTATTAACT
1 AGTCACGCAA-TACTTATCAACC
29031693 AGTCACGCAATACTTATCAACC
1 AGTCACGCAATACTTATCAACC
29031715 AGTCACGCAATAC
1 AGTCACGCAATAC
29031728 CATATTAATT
Statistics
Matches: 47, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
22 30 0.64
23 17 0.36
ACGTcount: A:0.36, C:0.31, G:0.11, T:0.21
Consensus pattern (22 bp):
AGTCACGCAATACTTATCAACC
Found at i:29031734 original size:45 final size:45
Alignment explanation
Indices: 29031648--29031749 Score: 116
Period size: 45 Copynumber: 2.3 Consensus size: 45
29031638 ACAATGCCTA
* * * *
29031648 AGTCACACAATGCTTACAAACCAGTCACGCAACGCCTTATTAACT
1 AGTCACGCAATACTTACAAACCAGTCACGCAACACCATATTAACT
* *
29031693 AGTCACGCAATACTTATC-AACCAGTCACGCAATACCATATTAATT
1 AGTCACGCAATACTTA-CAAACCAGTCACGCAACACCATATTAACT
* *
29031738 AGTTACGTAATA
1 AGTCACGCAATA
29031750 TCTAAAAATT
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
45 47 0.98
46 1 0.02
ACGTcount: A:0.37, C:0.26, G:0.11, T:0.25
Consensus pattern (45 bp):
AGTCACGCAATACTTACAAACCAGTCACGCAACACCATATTAACT
Found at i:29031759 original size:22 final size:22
Alignment explanation
Indices: 29031734--29031794 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
29031724 ATACCATATT
* *
29031734 AATTAGTTACGTAATA-TCTAAA
1 AATTAGTCACATAATACT-TAAA
29031756 AATTAGTCACATAATACTTAAA
1 AATTAGTCACATAATACTTAAA
* *
29031778 AACTAGTCACACAATAC
1 AATTAGTCACATAATAC
29031795 GCAAAAACTA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
22 33 0.97
23 1 0.03
ACGTcount: A:0.48, C:0.16, G:0.07, T:0.30
Consensus pattern (22 bp):
AATTAGTCACATAATACTTAAA
Found at i:29031800 original size:22 final size:22
Alignment explanation
Indices: 29031753--29031804 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
29031743 CGTAATATCT
* * **
29031753 AAAAATTAGTCACATAATACTT
1 AAAAACTAGTCACACAATACGC
29031775 AAAAACTAGTCACACAATACGC
1 AAAAACTAGTCACACAATACGC
29031797 AAAAACTA
1 AAAAACTA
29031805 ATTACGCAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.54, C:0.19, G:0.06, T:0.21
Consensus pattern (22 bp):
AAAAACTAGTCACACAATACGC
Found at i:29032002 original size:33 final size:35
Alignment explanation
Indices: 29031931--29032004 Score: 98
Period size: 35 Copynumber: 2.2 Consensus size: 35
29031921 TGAATAATGC
* *
29031931 TCAAAAGTTTTTTTTCATGTATAAAAAATCACCGT
1 TCAAAAGTTTTTCTTCATGTATAAAAAACCACCGT
* *
29031966 TCAAAAGTTTTTCTTCGTGTATTAAAAACCA-C-T
1 TCAAAAGTTTTTCTTCATGTATAAAAAACCACCGT
29031999 TCAAAA
1 TCAAAA
29032005 TGCTCAAAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
33 7 0.20
34 1 0.03
35 27 0.77
ACGTcount: A:0.38, C:0.16, G:0.08, T:0.38
Consensus pattern (35 bp):
TCAAAAGTTTTTCTTCATGTATAAAAAACCACCGT
Found at i:29033009 original size:25 final size:25
Alignment explanation
Indices: 29032975--29033023 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
29032965 AAGATAGAAG
29032975 AAACGCGCCTATGGTTCATCTATCC
1 AAACGCGCCTATGGTTCATCTATCC
29033000 AAACGCGCCTATGGTTCATCTATC
1 AAACGCGCCTATGGTTCATCTATC
29033024 TTCGCCTCTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.29
Consensus pattern (25 bp):
AAACGCGCCTATGGTTCATCTATCC
Found at i:29037848 original size:48 final size:48
Alignment explanation
Indices: 29037766--29037900 Score: 139
Period size: 48 Copynumber: 2.8 Consensus size: 48
29037756 AGGACCCAAA
* * * * *
29037766 CCATCAGGTGTCAATGATCCCGAGCCCAACCTTGAACCCAACCCCA-T
1 CCATCTGGAGTCAATGATCCAGAACCCAGCCTTGAACCCAACCCCAGT
* ***
29037813 ACCATCTGGAGTCACA-GATCCAGAACCCAGTCTTGAACCTTGCCCCAGT
1 -CCATCTGGAGTCA-ATGATCCAGAACCCAGCCTTGAACCCAACCCCAGT
* *
29037862 CCATCTGGCGTCAATGATCCAGAACCTAGCCTTGAACCC
1 CCATCTGGAGTCAATGATCCAGAACCCAGCCTTGAACCC
29037901 CATTTGCGAG
Statistics
Matches: 71, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
47 1 0.01
48 68 0.96
49 2 0.03
ACGTcount: A:0.27, C:0.37, G:0.17, T:0.19
Consensus pattern (48 bp):
CCATCTGGAGTCAATGATCCAGAACCCAGCCTTGAACCCAACCCCAGT
Found at i:29039294 original size:4 final size:4
Alignment explanation
Indices: 29039285--29039311 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
29039275 TACAATAGCA
29039285 ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATA
29039312 TCTATGACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.52, C:0.22, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:29042296 original size:22 final size:22
Alignment explanation
Indices: 29042254--29042296 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
29042244 ATACTAACAA
* *
29042254 TAAAAATTAAAATCAGTTTTTT
1 TAAAAATTAAAATAAGATTTTT
29042276 TAAAAA-TAAAATAATGATTTT
1 TAAAAATTAAAATAA-GATTTT
29042297 AAATAAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.51, C:0.02, G:0.05, T:0.42
Consensus pattern (22 bp):
TAAAAATTAAAATAAGATTTTT
Found at i:29055751 original size:2 final size:2
Alignment explanation
Indices: 29055744--29055773 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
29055734 AAGAGCATAA
29055744 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
29055774 CAACACGAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:29062763 original size:2 final size:2
Alignment explanation
Indices: 29062723--29062755 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
29062713 AAAAAAAAAA
29062723 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
29062756 CTTATATACA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:29068548 original size:20 final size:20
Alignment explanation
Indices: 29068523--29068584 Score: 54
Period size: 20 Copynumber: 3.0 Consensus size: 20
29068513 AAATTTAAAT
29068523 TTATAAAATTTATATTTTAA
1 TTATAAAATTTATATTTTAA
* *
29068543 TTATAACATATTTAAATTATAA
1 TTATAA-A-ATTTATATTTTAA
* *
29068565 ATA-AAAAATTAGTATTTTAA
1 TTATAAAATTTA-TATTTTAA
29068585 AATATTAATT
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
19 4 0.12
20 13 0.39
21 3 0.09
22 13 0.39
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (20 bp):
TTATAAAATTTATATTTTAA
Found at i:29068553 original size:16 final size:16
Alignment explanation
Indices: 29068534--29068564 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
29068524 TATAAAATTT
*
29068534 ATATTTTAATTATAAC
1 ATATTTAAATTATAAC
29068550 ATATTTAAATTATAA
1 ATATTTAAATTATAA
29068565 ATAAAAAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (16 bp):
ATATTTAAATTATAAC
Found at i:29068755 original size:51 final size:51
Alignment explanation
Indices: 29068694--29068796 Score: 122
Period size: 51 Copynumber: 2.0 Consensus size: 51
29068684 ATTATATATT
*
29068694 ATAAAATATTTTGAATTTAAAAATT-AATTA-AAAGTATTAATATTTT-AATC
1 ATAAAATA-TTT-AAATTAAAAATTAAATTACAAAGTATTAATATTTTCAATC
* * *
29068744 ATAATAATATTTAAATTATAAATTAAATTACCAATTATTAATATTTTCAATC
1 ATAA-AATATTTAAATTAAAAATTAAATTACAAAGTATTAATATTTTCAATC
29068796 A
1 A
29068797 ATTATAAATT
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
49 10 0.22
50 12 0.27
51 18 0.40
52 5 0.11
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.44
Consensus pattern (51 bp):
ATAAAATATTTAAATTAAAAATTAAATTACAAAGTATTAATATTTTCAATC
Found at i:29068764 original size:17 final size:17
Alignment explanation
Indices: 29068731--29068764 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
29068721 TTAAAAGTAT
*
29068731 TAATATTTTAATCATAA
1 TAATATTTAAATCATAA
*
29068748 TAATATTTAAATTATAA
1 TAATATTTAAATCATAA
29068765 ATTAAATTAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (17 bp):
TAATATTTAAATCATAA
Found at i:29068963 original size:23 final size:23
Alignment explanation
Indices: 29068906--29068979 Score: 80
Period size: 23 Copynumber: 3.3 Consensus size: 23
29068896 TAAATTACAA
* * *
29068906 ATAAAATATTAATACTTAAATA-
1 ATAAATTATTAATATTTAAAAAT
* *
29068928 ATCAACTATTAATATTTAAAAAT
1 ATAAATTATTAATATTTAAAAAT
29068951 ATAAATTATTAATATTTAAAAGAT
1 ATAAATTATTAATATTTAAAA-AT
29068975 A-AAAT
1 ATAAAT
29068980 AAAATAAAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
22 18 0.41
23 23 0.52
24 3 0.07
ACGTcount: A:0.57, C:0.04, G:0.01, T:0.38
Consensus pattern (23 bp):
ATAAATTATTAATATTTAAAAAT
Found at i:29068976 original size:22 final size:21
Alignment explanation
Indices: 29068904--29068980 Score: 91
Period size: 22 Copynumber: 3.5 Consensus size: 21
29068894 ATTAAATTAC
*
29068904 AAATAAAATATTAATACTTAA
1 AAATAAAATATTAATATTTAA
* *
29068925 ATAATCAACTATTAATATTTAA
1 A-AATAAAATATTAATATTTAA
29068947 AAATATAAATTATTAATATTTAA
1 AAATA-AAA-TATTAATATTTAA
29068970 AAGATAAAATA
1 AA-ATAAAATA
29068981 AAATAAAAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
21 4 0.09
22 22 0.47
23 18 0.38
24 3 0.06
ACGTcount: A:0.58, C:0.04, G:0.01, T:0.36
Consensus pattern (21 bp):
AAATAAAATATTAATATTTAA
Found at i:29069019 original size:127 final size:130
Alignment explanation
Indices: 29068883--29069146 Score: 369
Period size: 127 Copynumber: 2.1 Consensus size: 130
29068873 TAGTATTTTA
*
29068883 TAATATTAATGATTAAATTACAAATAAAATATTAATACTTAAA-TAATCAACTATTAATA-TTT-
1 TAATATTAATGATTAAAGTACAAATAAAATATTAATACTTAAACT-ATCAACTATTAATATTTTA
29068945 AA-AAA-TATAAATTATTAATATTTAAAAGATAAAATAAAATAAAAATAAATAATCACAATAACA
65 AATAAATTATAAATTATTAATATTTAAAA-ATAAAATAAAATAAAAATAAATAATCACAATAACA
29069008 TT
129 TT
* * * *
29069010 TAATATTAATGATTAAAGTATAAATAAAATATTAATATTTAAACTATCAATTTTTAATATTTTAA
1 TAATATTAATGATTAAAGTACAAATAAAATATTAATACTTAAACTATCAACTATTAATATTTTAA
* * ** **
29069075 ATAAATTATACATTATTAATGTTTAAAAATAAAATAATTTAAAAATAAATAATCATTATAACATT
66 ATAAATTATAAATTATTAATATTTAAAAATAAAATAAAATAAAAATAAATAATCACAATAACATT
29069140 TAA-ATTA
1 TAATATTA
29069147 TAAATAAAAT
Statistics
Matches: 121, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
127 52 0.43
128 4 0.03
129 6 0.05
130 39 0.32
131 20 0.17
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.38
Consensus pattern (130 bp):
TAATATTAATGATTAAAGTACAAATAAAATATTAATACTTAAACTATCAACTATTAATATTTTAA
ATAAATTATAAATTATTAATATTTAAAAATAAAATAAAATAAAAATAAATAATCACAATAACATT
Found at i:29069124 original size:15 final size:16
Alignment explanation
Indices: 29069096--29069127 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
29069086 ATTATTAATG
29069096 TTTAAAAATAAAATAA
1 TTTAAAAATAAAATAA
29069112 TTTAAAAAT-AAATAA
1 TTTAAAAATAAAATAA
29069127 T
1 T
29069128 CATTATAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
TTTAAAAATAAAATAA
Found at i:29071361 original size:20 final size:22
Alignment explanation
Indices: 29071338--29071391 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 22
29071328 AATAAAAGAA
29071338 TAAAAAATTATTT-A-ACTTTT
1 TAAAAAATTATTTAAGACTTTT
*
29071358 T-AAAAATAATTTCAAGACTTTT
1 TAAAAAATTATTT-AAGACTTTT
29071380 TAAAAATATTAT
1 TAAAAA-ATTAT
29071392 GTCAAAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
19 10 0.37
20 1 0.04
21 1 0.04
22 7 0.26
23 4 0.15
24 4 0.15
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (22 bp):
TAAAAAATTATTTAAGACTTTT
Found at i:29071364 original size:19 final size:21
Alignment explanation
Indices: 29071340--29071387 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
29071330 TAAAAGAATA
*
29071340 AAAAATTATTT-A-ACTTTTT
1 AAAAATAATTTAAGACTTTTT
29071359 AAAAATAATTTCAAGACTTTTT
1 AAAAATAATTT-AAGACTTTTT
29071381 AAAAATA
1 AAAAATA
29071388 TTATGTCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 10 0.40
21 1 0.04
22 14 0.56
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (21 bp):
AAAAATAATTTAAGACTTTTT
Found at i:29072300 original size:18 final size:18
Alignment explanation
Indices: 29072279--29072313 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
29072269 ACGTGGTGGC
*
29072279 CGTGGTGGAGGAAGAGGG
1 CGTGGAGGAGGAAGAGGG
29072297 CGTGGAGGAGGAAGAGG
1 CGTGGAGGAGGAAGAGG
29072314 AGGAATGAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.06, G:0.60, T:0.09
Consensus pattern (18 bp):
CGTGGAGGAGGAAGAGGG
Found at i:29081498 original size:21 final size:20
Alignment explanation
Indices: 29081474--29081522 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
29081464 TAAAAAACTT
* *
29081474 AAAAATATTTTTAAATTTTTG
1 AAAAATATCTATAAA-TTTTG
*
29081495 AAAAAAATCTATAAATTTTG
1 AAAAATATCTATAAATTTTG
29081515 AAAAATAT
1 AAAAATAT
29081523 AAAAATAGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 12 0.50
21 12 0.50
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.41
Consensus pattern (20 bp):
AAAAATATCTATAAATTTTG
Found at i:29081519 original size:49 final size:49
Alignment explanation
Indices: 29081460--29081573 Score: 135
Period size: 49 Copynumber: 2.3 Consensus size: 49
29081450 AAATTTTATC
*
29081460 ATTTTAAAAAACTTAAAAATA-TTTTTAAATTTTTGAAAAA-AATC-TATAA
1 ATTTT-AAAAA-TTAAAAATAGTTTTTAAATTTTT-AAAAATAATCATAAAA
* *
29081509 ATTTTGAAAAATATAAAAATAGTTTTTTAATTTTTAAAAATTATCATAAAA
1 ATTTT-AAAAAT-TAAAAATAGTTTTTAAATTTTTAAAAATAATCATAAAA
29081560 ATTTTAAAAATTAA
1 ATTTTAAAAATTAA
29081574 TTATTAAAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 8
0.83 0.06 0.12
Matches are distributed among these distances:
48 1 0.02
49 26 0.46
50 21 0.37
51 9 0.16
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.42
Consensus pattern (49 bp):
ATTTTAAAAATTAAAAATAGTTTTTAAATTTTTAAAAATAATCATAAAA
Found at i:29081569 original size:50 final size:49
Alignment explanation
Indices: 29081460--29081570 Score: 129
Period size: 50 Copynumber: 2.2 Consensus size: 49
29081450 AAATTTTATC
*
29081460 ATTTTAAAAA-ACTTAAAAATATTTTTAAATTTTTGAAAAAAATCTATAA
1 ATTTTAAAAATAC-TAAAAATATTTTTAAATTTTTGAAAAAAATCTAAAA
* *
29081509 ATTTTGAAAAATA-TAAAAATAGTTTTTTAATTTTT-AAAAATTATCATAAAA
1 ATTTT-AAAAATACTAAAAATA-TTTTTAAATTTTTGAAAAA-AATC-TAAAA
29081560 ATTTTAAAAAT
1 ATTTTAAAAAT
29081571 TAATTATTAA
Statistics
Matches: 54, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
49 18 0.33
50 26 0.48
51 10 0.19
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (49 bp):
ATTTTAAAAATACTAAAAATATTTTTAAATTTTTGAAAAAAATCTAAAA
Found at i:29090637 original size:1 final size:1
Alignment explanation
Indices: 29090631--29090655 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
29090621 GCGCGCTCAA
29090631 CCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCC
29090656 AGGAGTCGGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:1.00, G:0.00, T:0.00
Consensus pattern (1 bp):
C
Found at i:29092871 original size:2 final size:2
Alignment explanation
Indices: 29092864--29092900 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
29092854 TATTAAATTT
29092864 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
29092901 TTGAAGTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:29094077 original size:21 final size:22
Alignment explanation
Indices: 29094053--29094100 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 22
29094043 TTAATAGTAT
29094053 TATAATA-TAGA-TTTAACTAGA
1 TATAATATTAGAGTTTAACTA-A
29094074 TAT-ATATTAGAGTTTAACTAA
1 TATAATATTAGAGTTTAACTAA
29094095 -ATAATA
1 TATAATA
29094101 GTATTGTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
20 5 0.21
21 11 0.46
22 8 0.33
ACGTcount: A:0.48, C:0.04, G:0.08, T:0.40
Consensus pattern (22 bp):
TATAATATTAGAGTTTAACTAA
Found at i:29094857 original size:18 final size:18
Alignment explanation
Indices: 29094836--29094882 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
29094826 ATCAAGAAAT
* *
29094836 AATTAAAAATATAAGATA
1 AATTAAAAATATAAAAAA
* *
29094854 AATTAAATATTTAAAAAA
1 AATTAAAAATATAAAAAA
29094872 AATTAAAAATA
1 AATTAAAAATA
29094883 AGTATATAAA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (18 bp):
AATTAAAAATATAAAAAA
Found at i:29115578 original size:87 final size:87
Alignment explanation
Indices: 29115444--29115618 Score: 307
Period size: 87 Copynumber: 2.0 Consensus size: 87
29115434 GCTTCATTGG
*
29115444 AGACACCTTGTTGCTCCCCAAAAGATTCGGTAAATGAAGGTAAAACTGAGGGTTCATCTTCCCAG
1 AGACACCTTGTTGCTCCCCAAAAGATTCAGTAAATGAAGGTAAAACTGAGGGTTCATCTTCCCAG
29115509 GATAATTCTTCTGCTGCTTTGC
66 GATAATTCTTCTGCTGCTTTGC
* *
29115531 AGACAGCTTGTTGCTCCCCAAAAGTTTCAGT-AATGGAAGGTAAAACTGAGGGTTCATCTTCCCA
1 AGACACCTTGTTGCTCCCCAAAAGATTCAGTAAAT-GAAGGTAAAACTGAGGGTTCATCTTCCCA
29115595 GGATAATTCTTCTGCTGCTTTGC
65 GGATAATTCTTCTGCTGCTTTGC
29115618 A
1 A
29115619 TGAATCTCTT
Statistics
Matches: 84, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
86 3 0.04
87 81 0.96
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.30
Consensus pattern (87 bp):
AGACACCTTGTTGCTCCCCAAAAGATTCAGTAAATGAAGGTAAAACTGAGGGTTCATCTTCCCAG
GATAATTCTTCTGCTGCTTTGC
Found at i:29124686 original size:19 final size:21
Alignment explanation
Indices: 29124651--29124692 Score: 61
Period size: 19 Copynumber: 2.1 Consensus size: 21
29124641 ATTCAATCAC
29124651 TATTAATAAAAATTATTATTT
1 TATTAATAAAAATTATTATTT
*
29124672 TATT-ATAAAAA-TATTGTTT
1 TATTAATAAAAATTATTATTT
29124691 TA
1 TA
29124693 ATTCTATGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 9 0.45
20 7 0.35
21 4 0.20
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (21 bp):
TATTAATAAAAATTATTATTT
Found at i:29140217 original size:17 final size:18
Alignment explanation
Indices: 29140174--29140220 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 18
29140164 AATATTAAAT
*
29140174 ATTAAATATTTTATTTATA
1 ATTAAA-ATATTATTTATA
* *
29140193 ATTTAAATATTA-TTATG
1 ATTAAAATATTATTTATA
29140210 ATTAAAATATT
1 ATTAAAATATT
29140221 GATAATTGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
17 14 0.58
18 5 0.21
19 5 0.21
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (18 bp):
ATTAAAATATTATTTATA
Found at i:29147516 original size:46 final size:46
Alignment explanation
Indices: 29147463--29147554 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
29147453 ATCATTTGGT
29147463 GACAAACTAAGGCAACACCTCAATATAATGTTTTCTTGCCCATGTG
1 GACAAACTAAGGCAACACCTCAATATAATGTTTTCTTGCCCATGTG
29147509 GACAAACTAAGGCAACACCTCAATATAATGTTTTCTTGCCCATGTG
1 GACAAACTAAGGCAACACCTCAATATAATGTTTTCTTGCCCATGTG
29147555 ACTTCCATGT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (46 bp):
GACAAACTAAGGCAACACCTCAATATAATGTTTTCTTGCCCATGTG
Found at i:29153118 original size:33 final size:33
Alignment explanation
Indices: 29153091--29153157 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
29153081 ACAGAGTTTT
** * *
29153091 CAAGATTTGGAACGACCATTGCAACAGAATTCA
1 CAAGATTCAGAACAACCACTGCAACAGAATTCA
29153124 CAAGATTCAGAACAACCACTGCAACAGAATTCA
1 CAAGATTCAGAACAACCACTGCAACAGAATTCA
29153157 C
1 C
29153158 GGCATGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.42, C:0.25, G:0.15, T:0.18
Consensus pattern (33 bp):
CAAGATTCAGAACAACCACTGCAACAGAATTCA
Found at i:29169691 original size:14 final size:16
Alignment explanation
Indices: 29169666--29169702 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
29169656 TTATTTTAAA
29169666 AGGAAATGGAAAGAAG
1 AGGAAATGGAAAGAAG
29169682 -GGAAAT-GAAAGAAG
1 AGGAAATGGAAAGAAG
29169696 AGGAAAT
1 AGGAAAT
29169703 ACCTCGTGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 8 0.40
15 12 0.60
ACGTcount: A:0.57, C:0.00, G:0.35, T:0.08
Consensus pattern (16 bp):
AGGAAATGGAAAGAAG
Found at i:29174621 original size:2 final size:2
Alignment explanation
Indices: 29174616--29174642 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
29174606 ATTGTGTGGG
29174616 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
29174643 TATGTACATN
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:29175487 original size:20 final size:19
Alignment explanation
Indices: 29175445--29175494 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 19
29175435 AAATAAAAAG
** *
29175445 TAAAAAAATTAAAATTTAT
1 TAAAAAAATTAAAAAATAA
29175464 TAAAAATAATTAAAAAATAA
1 TAAAAA-AATTAAAAAATAA
*
29175484 TAAATAAATTA
1 TAAAAAAATTA
29175495 TTAATTATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
19 11 0.42
20 15 0.58
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (19 bp):
TAAAAAAATTAAAAAATAA
Found at i:29175527 original size:16 final size:17
Alignment explanation
Indices: 29175502--29175536 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
29175492 TTATTAATTA
29175502 TTTTACTTTTATAT-TT
1 TTTTACTTTTATATATT
*
29175518 TTTTATTTTTATATATT
1 TTTTACTTTTATATATT
29175535 TT
1 TT
29175537 AATATAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (17 bp):
TTTTACTTTTATATATT
Found at i:29177557 original size:28 final size:28
Alignment explanation
Indices: 29177502--29177562 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 28
29177492 ATTATTATTA
* * * *
29177502 TTATTATAGTAAAAATTTTGAATCAAAT
1 TTATTATAGTAAAAAATCTCAAACAAAT
*
29177530 TTATTATAGTAAAAAATCTCAAAGAAAT
1 TTATTATAGTAAAAAATCTCAAACAAAT
*
29177558 CTATT
1 TTATT
29177563 GGAAATATGA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.39
Consensus pattern (28 bp):
TTATTATAGTAAAAAATCTCAAACAAAT
Found at i:29177671 original size:2 final size:2
Alignment explanation
Indices: 29177664--29177696 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
29177654 AATTATTTAT
29177664 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
29177697 TTTAATGACT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:29177895 original size:17 final size:18
Alignment explanation
Indices: 29177873--29177921 Score: 55
Period size: 17 Copynumber: 2.7 Consensus size: 18
29177863 CCTAAACCCA
29177873 CTAAGTCTTCATAT-AAT
1 CTAAGTCTTCATATAAAT
* *
29177890 CTAAGTGTTAATATAAAT
1 CTAAGTCTTCATATAAAT
*
29177908 CTAAATCTATCATA
1 CTAAGTCT-TCATA
29177922 ACATATTATA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
17 12 0.48
18 9 0.36
19 4 0.16
ACGTcount: A:0.41, C:0.14, G:0.06, T:0.39
Consensus pattern (18 bp):
CTAAGTCTTCATATAAAT
Found at i:29177963 original size:40 final size:41
Alignment explanation
Indices: 29177913--29177993 Score: 119
Period size: 40 Copynumber: 2.0 Consensus size: 41
29177903 TAAATCTAAA
* *
29177913 TCTATCATAACATATTATATCT-AAAAATTCAGTCCAATAG
1 TCTATCATAACATATTATATATCAAAAATTCAATCCAATAG
* *
29177953 TCTATTATAACATATTATATATCAATAATTCAATCCAATAG
1 TCTATCATAACATATTATATATCAAAAATTCAATCCAATAG
29177994 CCCAATATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
40 20 0.56
41 16 0.44
ACGTcount: A:0.43, C:0.16, G:0.04, T:0.37
Consensus pattern (41 bp):
TCTATCATAACATATTATATATCAAAAATTCAATCCAATAG
Found at i:29216971 original size:15 final size:15
Alignment explanation
Indices: 29216953--29216987 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
29216943 GCCAGAGAAG
*
29216953 AAGAAAGAAGAGCCC
1 AAGAAAGAAGAGCCA
*
29216968 AAGAAAGAGGAGCCA
1 AAGAAAGAAGAGCCA
29216983 AAGAA
1 AAGAA
29216988 GCCAGCAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.57, C:0.14, G:0.29, T:0.00
Consensus pattern (15 bp):
AAGAAAGAAGAGCCA
Found at i:29218671 original size:32 final size:32
Alignment explanation
Indices: 29218602--29218692 Score: 110
Period size: 32 Copynumber: 2.8 Consensus size: 32
29218592 AAAGTAAAAA
* * *
29218602 ATGTCATATAATCATATTATCATGATAAATTAGT
1 ATGTCATATCATCATA--ATTATGATAAATTAAT
* *
29218636 ATGTCATATCATCATAGTTATGATATATTAAT
1 ATGTCATATCATCATAATTATGATAAATTAAT
29218668 ATGTCATATCATCATTAATTATGAT
1 ATGTCATATCATCA-TAATTATGAT
29218693 CTTTTAGTGT
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
32 26 0.52
33 9 0.18
34 15 0.30
ACGTcount: A:0.38, C:0.10, G:0.09, T:0.43
Consensus pattern (32 bp):
ATGTCATATCATCATAATTATGATAAATTAAT
Done.