Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36364294
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2168405 characters in sequence are not A, C, G, or T
File 81 of 91
Found at i:30373117 original size:17 final size:17
Alignment explanation
Indices: 30373074--30373120 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
30373064 AATTAAATTA
30373074 ATTTTTATATATTATAT
1 ATTTTTATATATTATAT
* *
30373091 ATATTAATATA-TATAAT
1 ATTTTTATATATTAT-AT
*
30373108 TTTTTTATATATT
1 ATTTTTATATATT
30373121 CAAAAGAATT
Statistics
Matches: 23, Mismatches: 5, Indels: 3
0.74 0.16 0.10
Matches are distributed among these distances:
16 3 0.13
17 19 0.83
18 1 0.04
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
ATTTTTATATATTATAT
Found at i:30373597 original size:24 final size:25
Alignment explanation
Indices: 30373545--30373597 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
30373535 TTTATTATTT
*
30373545 TTTTAATTCTTATTTTTTTATTTCA
1 TTTTAATTCTTATTTTTTTATTACA
30373570 -TTTAATTCTT-TTTTGTTTA-TACA
1 TTTTAATTCTTATTTT-TTTATTACA
30373593 TTTTA
1 TTTTA
30373598 GAGATGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
23 7 0.28
24 18 0.72
ACGTcount: A:0.21, C:0.08, G:0.02, T:0.70
Consensus pattern (25 bp):
TTTTAATTCTTATTTTTTTATTACA
Found at i:30373858 original size:17 final size:18
Alignment explanation
Indices: 30373836--30373874 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
30373826 AGGAGATTTA
30373836 AGTTAAT-AATTTGTGAT
1 AGTTAATGAATTTGTGAT
* *
30373853 AGTTAATGATTTTGTGTT
1 AGTTAATGAATTTGTGAT
30373871 AGTT
1 AGTT
30373875 TTATCCTGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.51
Consensus pattern (18 bp):
AGTTAATGAATTTGTGAT
Found at i:30374346 original size:27 final size:26
Alignment explanation
Indices: 30374316--30374418 Score: 98
Period size: 27 Copynumber: 4.2 Consensus size: 26
30374306 ATGTTTTAAT
30374316 TATAAATTATTAATATTTTAAATAAA
1 TATAAATTATTAATATTTTAAATAAA
*
30374342 CTATAAATTATTAATATTTTTAA-AAA
1 -TATAAATTATTAATATTTTAAATAAA
30374368 TA-AAA-TA--AATATTTT-AAT-AA
1 TATAAATTATTAATATTTTAAATAAA
* *
30374388 -A-AATTTATTAATATTTTAAAAAAA
1 TATAAATTATTAATATTTTAAATAAA
30374412 TTATAAA
1 -TATAAA
30374419 AATAAGATAT
Statistics
Matches: 63, Mismatches: 4, Indels: 18
0.74 0.05 0.21
Matches are distributed among these distances:
19 3 0.05
20 6 0.10
21 8 0.13
22 8 0.13
23 4 0.06
24 5 0.08
25 2 0.03
26 4 0.06
27 23 0.37
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (26 bp):
TATAAATTATTAATATTTTAAATAAA
Found at i:30374400 original size:22 final size:22
Alignment explanation
Indices: 30374301--30374413 Score: 81
Period size: 22 Copynumber: 5.0 Consensus size: 22
30374291 CAAATAATCA
* *
30374301 TATTAATGTTTTAATTATAAA-T
1 TATTAATATTTTAA-TAAAAATT
*
30374323 TATTAATATTTTAAATAAACTATAAAT
1 TATTAATATTTT-AAT-AA--A-AATT
*
30374350 TATTAATATTTT--TAAAAATAA
1 TATTAATATTTTAATAAAAAT-T
* *
30374371 AATAAATATTTTAATAAAAATT
1 TATTAATATTTTAATAAAAATT
30374393 TATTAATATTTTAA-AAAAATT
1 TATTAATATTTTAATAAAAATT
30374414 ATAAAAATAA
Statistics
Matches: 73, Mismatches: 9, Indels: 19
0.72 0.09 0.19
Matches are distributed among these distances:
20 2 0.03
21 18 0.25
22 24 0.33
23 12 0.16
24 1 0.01
25 1 0.01
26 2 0.03
27 13 0.18
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (22 bp):
TATTAATATTTTAATAAAAATT
Found at i:30374415 original size:20 final size:20
Alignment explanation
Indices: 30374346--30374415 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 20
30374336 AATAAACTAT
30374346 AAATTATTAATATTTTTAAAA
1 AAATTATTAATA-TTTTAAAA
* *
30374367 ATAA-AATAAATATTTTAATAA
1 A-AATTATTAATATTTTAA-AA
30374388 AAATTTATTAATATTTTAAAA
1 AAA-TTATTAATATTTTAAAA
30374409 AAATTAT
1 AAATTAT
30374416 AAAAATAAGA
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
20 12 0.29
21 15 0.37
22 14 0.34
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
AAATTATTAATATTTTAAAA
Found at i:30374422 original size:22 final size:22
Alignment explanation
Indices: 30374374--30374422 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
30374364 AAAATAAAAT
*
30374374 AAATATTTTAATAAAAATTTAT
1 AAATATTTTAATAAAAATTTAA
*
30374396 TAATATTTTAA-AAAAATTATAA
1 AAATATTTTAATAAAAATT-TAA
30374418 AAATA
1 AAATA
30374423 AGATATTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 7 0.30
22 16 0.70
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (22 bp):
AAATATTTTAATAAAAATTTAA
Found at i:30387398 original size:15 final size:15
Alignment explanation
Indices: 30387378--30387407 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
30387368 CCTCCAGATT
30387378 TTCCAGGAAAAAAAC
1 TTCCAGGAAAAAAAC
*
30387393 TTCCAGGAAACAAAC
1 TTCCAGGAAAAAAAC
30387408 AAACCCTAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.23, G:0.13, T:0.13
Consensus pattern (15 bp):
TTCCAGGAAAAAAAC
Found at i:30399812 original size:30 final size:30
Alignment explanation
Indices: 30399776--30399846 Score: 133
Period size: 30 Copynumber: 2.4 Consensus size: 30
30399766 TCTATCAAGC
30399776 CATCATCCTCCTGCTCAGGAACTGCCTCTA
1 CATCATCCTCCTGCTCAGGAACTGCCTCTA
30399806 CATCATCCTCCTGCTCAGGAACTGCCTCTA
1 CATCATCCTCCTGCTCAGGAACTGCCTCTA
*
30399836 CCTCATCCTCC
1 CATCATCCTCC
30399847 ACTAATACTG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.18, C:0.44, G:0.11, T:0.27
Consensus pattern (30 bp):
CATCATCCTCCTGCTCAGGAACTGCCTCTA
Found at i:30412736 original size:16 final size:17
Alignment explanation
Indices: 30412717--30412758 Score: 61
Period size: 16 Copynumber: 2.6 Consensus size: 17
30412707 CTCGTAAACC
*
30412717 TTCTCCCTCTTC-CTCT
1 TTCTCTCTCTTCTCTCT
30412733 TTCTCTCTC-TCTCTCT
1 TTCTCTCTCTTCTCTCT
30412749 TTCTCTCTCT
1 TTCTCTCTCT
30412759 CTTCTCAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 2 0.09
16 21 0.91
ACGTcount: A:0.00, C:0.45, G:0.00, T:0.55
Consensus pattern (17 bp):
TTCTCTCTCTTCTCTCT
Found at i:30419526 original size:18 final size:18
Alignment explanation
Indices: 30419503--30419557 Score: 56
Period size: 18 Copynumber: 2.9 Consensus size: 18
30419493 CATTAATAAT
30419503 ATATTTTTAAAATATACA
1 ATATTTTTAAAATATACA
* * *
30419521 ATATTTATAAAAAATTATTA
1 ATATTTTTAAAATA-TA-CA
*
30419541 ATATTTTTAAAGTATAC
1 ATATTTTTAAAATATAC
30419558 TTAAAAATAT
Statistics
Matches: 28, Mismatches: 7, Indels: 4
0.72 0.18 0.10
Matches are distributed among these distances:
18 12 0.43
19 4 0.14
20 12 0.43
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (18 bp):
ATATTTTTAAAATATACA
Found at i:30419561 original size:20 final size:20
Alignment explanation
Indices: 30419503--30419561 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
30419493 CATTAATAAT
30419503 ATATTTTTAAAATATAC--A
1 ATATTTTTAAAATATACTTA
* *
30419521 ATATTTATAAAAAATTA-TTA
1 ATATTTTTAAAATA-TACTTA
*
30419541 ATATTTTTAAAGTATACTTA
1 ATATTTTTAAAATATACTTA
30419561 A
1 A
30419562 AAATATCCAT
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
18 12 0.38
19 4 0.12
20 16 0.50
ACGTcount: A:0.49, C:0.03, G:0.02, T:0.46
Consensus pattern (20 bp):
ATATTTTTAAAATATACTTA
Found at i:30434658 original size:44 final size:45
Alignment explanation
Indices: 30434591--30434680 Score: 121
Period size: 44 Copynumber: 2.0 Consensus size: 45
30434581 ACATAATATC
*
30434591 ATTTAAATTATATAAACAATATTAATAATTAAATCATCAATTATT
1 ATTTAAATTAAATAAACAATATTAATAATTAAATCATCAATTATT
* * *
30434636 NATTTAAATTAAAT-AA-AATATTAATATTTAAATTATCTATTATT
1 -ATTTAAATTAAATAAACAATATTAATAATTAAATCATCAATTATT
30434680 A
1 A
30434681 ATATTTTAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
43 1 0.03
44 25 0.62
45 2 0.05
46 12 0.30
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.44
Consensus pattern (45 bp):
ATTTAAATTAAATAAACAATATTAATAATTAAATCATCAATTATT
Found at i:30434765 original size:68 final size:67
Alignment explanation
Indices: 30434679--30434904 Score: 216
Period size: 67 Copynumber: 3.3 Consensus size: 67
30434669 TATCTATTAT
*
30434679 TAATATTTTAAATAAATAATCAATTATTAATTTTCAAAAATAAAATAAAATAAAATAATTGATCA
1 TAATATTTTAAATAAATAATCAATTATTAATTTTAAAAAATAAAATAAAATAAAATAATT-ATCA
*
30434744 TCA
65 TAA
*
30434747 TAATA-TTTAAATTAAATAA--AA-TATTAAAATTTTAAAAAAT-AAATAAATATTAATATTGAA
1 TAATATTTTAAA-TAAATAATCAATTATT--AATTTTAAAAAATAAAATAAA-A-TAA-AAT--A
*
30434807 ATTATCAATTAT
58 ATTATC-A-TAA
* *
30434819 TAATATTTTAAATAAATTATCAATTATTAATATTTTAAAAATAAAATAAAAT-AAA-AATTAATC
1 TAATATTTTAAATAAATAATCAATTATTAAT-TTTAAAAAATAAAATAAAATAAAATAATT-ATC
30434882 ATAA
64 ATAA
30434886 TAATA-TTTAAATTAAATAA
1 TAATATTTTAAA-TAAATAA
30434905 ATGTTAATAT
Statistics
Matches: 131, Mismatches: 9, Indels: 37
0.74 0.05 0.21
Matches are distributed among these distances:
65 4 0.03
66 15 0.11
67 32 0.24
68 20 0.15
69 5 0.04
70 3 0.02
71 6 0.05
72 13 0.10
73 10 0.08
74 12 0.09
75 11 0.08
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.39
Consensus pattern (67 bp):
TAATATTTTAAATAAATAATCAATTATTAATTTTAAAAAATAAAATAAAATAAAATAATTATCAT
AA
Found at i:30434785 original size:67 final size:65
Alignment explanation
Indices: 30434707--30434905 Score: 190
Period size: 75 Copynumber: 2.9 Consensus size: 65
30434697 ATCAATTATT
*
30434707 AATTTTCAAAAATAAAATAAAATAAAATAATTGATCATCATAATATTTAAATTAAATAAAATATT
1 AATTTT-AAAAATAAAATAAAATAAAATAATT-ATCATAATAATATTTAAATTAAATAAAATATT
30434772 AA
64 AA
* *
30434774 AATTTTAAAAA-ATAAATAAATATTAATATTGAAATTATCAATTATTAATATTTTAAA-TAAATT
1 AATTTTAAAAATA-AAATAAA-A-TAA-AAT--AATTATC-A-TAATAATA-TTTAAATTAAA-T
*
30434837 ATCAATTATTAA
56 A--AAATATTAA
*
30434849 TATTTTAAAAATAAAATAAAAT-AAA-AATTAATCATAATAATATTTAAATTAAATAAA
1 AATTTTAAAAATAAAATAAAATAAAATAATT-ATCATAATAATATTTAAATTAAATAAA
30434906 TGTTAATATT
Statistics
Matches: 110, Mismatches: 7, Indels: 33
0.73 0.05 0.22
Matches are distributed among these distances:
64 2 0.02
65 1 0.01
66 20 0.18
67 18 0.16
68 8 0.07
69 5 0.05
70 3 0.03
71 6 0.05
72 11 0.10
73 9 0.08
74 1 0.01
75 25 0.23
76 1 0.01
ACGTcount: A:0.58, C:0.03, G:0.01, T:0.38
Consensus pattern (65 bp):
AATTTTAAAAATAAAATAAAATAAAATAATTATCATAATAATATTTAAATTAAATAAAATATTAA
Found at i:30434808 original size:22 final size:24
Alignment explanation
Indices: 30434747--30434853 Score: 60
Period size: 27 Copynumber: 4.3 Consensus size: 24
30434737 TTGATCATCA
*
30434747 TAATATTT-AAATTAAATAAAATAT
1 TAATATTTGAAA-TAAATCAAATAT
* *
30434771 TAAAATTTTAAAAAATAAAT-AAATAT
1 TAATA-TTT--GAAATAAATCAAATAT
* *
30434797 TAATA-TTGAAAT-TATCAATTAT
1 TAATATTTGAAATAAATCAAATAT
* *
30434819 TAATATTTTAAATAAATTATCAATTAT
1 TAATATTTGAAAT-AA--ATCAAATAT
30434846 TAATATTT
1 TAATATTT
30434854 TAAAAATAAA
Statistics
Matches: 66, Mismatches: 7, Indels: 17
0.73 0.08 0.19
Matches are distributed among these distances:
21 2 0.03
22 14 0.21
23 6 0.09
24 6 0.09
25 3 0.05
26 10 0.15
27 22 0.33
28 3 0.05
ACGTcount: A:0.53, C:0.02, G:0.01, T:0.44
Consensus pattern (24 bp):
TAATATTTGAAATAAATCAAATAT
Found at i:30434809 original size:140 final size:140
Alignment explanation
Indices: 30434645--30434905 Score: 436
Period size: 140 Copynumber: 1.9 Consensus size: 140
30434635 TNATTTAAAT
* *
30434645 TAAATAAAATATTAATATTTAAATTATCTATTATTAATATTTTAAATAAATAATCAATTATTAAT
1 TAAATAAAATATTAATATTGAAATTATCAATTATTAATATTTTAAATAAATAATCAATTATTAAT
* *
30434710 -TTTCAAAAATAAAATAAAATAAAATAATTGATCATCATAATATTTAAATTAAATAAAATATTAA
66 ATTTCAAAAATAAAATAAAAT-AAA-AATTAATCATAATAATATTTAAATTAAATAAAATATTAA
30434774 AATTTTAAAAAA
129 AATTTTAAAAAA
*
30434786 TAAAT-AAATATTAATATTGAAATTATCAATTATTAATATTTTAAATAAATTATCAATTATTAAT
1 TAAATAAAATATTAATATTGAAATTATCAATTATTAATATTTTAAATAAATAATCAATTATTAAT
*
30434850 ATTTTAAAAATAAAATAAAATAAAAATTAATCATAATAATATTTAAATTAAATAAA
66 ATTTCAAAAATAAAATAAAATAAAAATTAATCATAATAATATTTAAATTAAATAAA
30434906 TGTTAATATT
Statistics
Matches: 113, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
139 30 0.27
140 59 0.52
141 24 0.21
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (140 bp):
TAAATAAAATATTAATATTGAAATTATCAATTATTAATATTTTAAATAAATAATCAATTATTAAT
ATTTCAAAAATAAAATAAAATAAAAATTAATCATAATAATATTTAAATTAAATAAAATATTAAAA
TTTTAAAAAA
Found at i:30434837 original size:27 final size:27
Alignment explanation
Indices: 30434805--30434857 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
30434795 ATTAATATTG
30434805 AAATTATCAATTATTAATATTTTAAAT
1 AAATTATCAATTATTAATATTTTAAAT
30434832 AAATTATCAATTATTAATATTTTAAA
1 AAATTATCAATTATTAATATTTTAAA
30434858 AATAAAATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (27 bp):
AAATTATCAATTATTAATATTTTAAAT
Found at i:30434854 original size:75 final size:72
Alignment explanation
Indices: 30434641--30434868 Score: 235
Period size: 75 Copynumber: 3.2 Consensus size: 72
30434631 TTATTNATTT
* *
30434641 AAATTAAATAAAATATTAATATTTAAATTATCTATTATTAATATTTTAAATAAATAATCAATTAT
1 AAATAAAAT-AAATATTAATA-TTAAATTATC-ATTATTAATATTTTAAATAAATTATCAATTAT
30434706 T-AATTTTCAA
63 TAAATTTT-AA
* * *
30434716 AAATAAAATAAA-A-TAA-AAT-AATTGATCATCA-TAATA-TTTAAATTAAA-TA--AAATATT
1 AAATAAAATAAATATTAATATTAAATT-ATCATTATTAATATTTTAAA-TAAATTATCAATTATT
30434772 AAAATTTTAA
64 -AAATTTTAA
30434782 AAA-ATAAATAAATATTAATATTGAAATTATCAATTATTAATATTTTAAATAAATTATCAATTAT
1 AAATA-AAATAAATATTAATATT-AAATTATC-ATTATTAATATTTTAAATAAATTATCAATTAT
30434846 TAATATTTTAA
63 TAA-ATTTTAA
30434857 AAATAAAATAAA
1 AAATAAAATAAA
30434869 ATAAAAATTA
Statistics
Matches: 127, Mismatches: 8, Indels: 36
0.74 0.05 0.21
Matches are distributed among these distances:
65 7 0.06
66 12 0.09
67 14 0.11
68 12 0.09
69 9 0.07
70 7 0.06
71 8 0.06
72 12 0.09
73 9 0.07
74 5 0.04
75 31 0.24
76 1 0.01
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (72 bp):
AAATAAAATAAATATTAATATTAAATTATCATTATTAATATTTTAAATAAATTATCAATTATTAA
ATTTTAA
Found at i:30434975 original size:24 final size:26
Alignment explanation
Indices: 30434926--30434975 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
30434916 TAAATGATTT
*
30434926 ATTATTAATATTTTAATTAAATTCTAG
1 ATTATTAATATTTTAA-TAAAATCTAG
30434953 ATTATTAATA-TTTAA-AAAATCTA
1 ATTATTAATATTTTAATAAAATCTA
30434976 ATAAAAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 7 0.32
26 5 0.23
27 10 0.45
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (26 bp):
ATTATTAATATTTTAATAAAATCTAG
Found at i:30434997 original size:112 final size:113
Alignment explanation
Indices: 30434786--30435003 Score: 282
Period size: 112 Copynumber: 1.9 Consensus size: 113
30434776 TTTTAAAAAA
*
30434786 TAAATAAATATTAATATTGAAATTATCAATTATTAATATTTTAAATAAATTATCAATTATTAATA
1 TAAATAAATATTAATATTGAAATGATCAATTATTAATATTTTAAATAAATTATCAATTATTAATA
*
30434851 TTTTAAAAATAAAATAAAATAAAAATTAATCAT-AATAATATTTAAAT
66 TTTAAAAAATAAAATAAAATAAAAATTAATCATAAATAATATTTAAAT
* * ** * *
30434898 TAAATAAATGTTAATATTTAAATGATTTATTATTAATATTTTAATTAAATTCT-AGATTATTAAT
1 TAAATAAATATTAATATTGAAATGATCAATTATTAATATTTTAAATAAATTATCA-ATTATTAAT
** *
30434962 ATTTAAAAAATCTAATAAAA-ATAAAATATCA-CATAAATAATA
65 ATTTAAAAAATAAAATAAAATA-AAAAT-TAATCATAAATAATA
30435004 AAGGATGTTT
Statistics
Matches: 91, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
111 2 0.02
112 80 0.88
113 9 0.10
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.41
Consensus pattern (113 bp):
TAAATAAATATTAATATTGAAATGATCAATTATTAATATTTTAAATAAATTATCAATTATTAATA
TTTAAAAAATAAAATAAAATAAAAATTAATCATAAATAATATTTAAAT
Found at i:30435933 original size:23 final size:24
Alignment explanation
Indices: 30435907--30435960 Score: 60
Period size: 24 Copynumber: 2.2 Consensus size: 24
30435897 ATATTAAAAT
30435907 TTAAATTTT-T-TTATTATATTTAA-
1 TTAAATTTTATATT-TTAT-TTTAAG
30435930 TTAAGATTTTATATTTTATTTTAAG
1 TTAA-ATTTTATATTTTATTTTAAG
30435955 TTAAAT
1 TTAAAT
30435961 AAATATTCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
23 4 0.15
24 12 0.44
25 9 0.33
26 2 0.07
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (24 bp):
TTAAATTTTATATTTTATTTTAAG
Found at i:30436182 original size:25 final size:24
Alignment explanation
Indices: 30436153--30436203 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
30436143 AAAAAAAGTA
*
30436153 TTTTAATTAATAATAATTAATTAAT
1 TTTTAATT-ATAAAAATTAATTAAT
* *
30436178 TTTTAATTATAAAAATTTATTGAT
1 TTTTAATTATAAAAATTAATTAAT
30436202 TT
1 TT
30436204 AAAATAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 15 0.65
25 8 0.35
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (24 bp):
TTTTAATTATAAAAATTAATTAAT
Found at i:30455854 original size:24 final size:24
Alignment explanation
Indices: 30455820--30455866 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
30455810 TTTGCCCCAT
30455820 TAACAAAATAAACATGGCATGCTA
1 TAACAAAATAAACATGGCATGCTA
*
30455844 TAACAAGATAAACATGGCATGCT
1 TAACAAAATAAACATGGCATGCT
30455867 GTGATAGGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.47, C:0.17, G:0.15, T:0.21
Consensus pattern (24 bp):
TAACAAAATAAACATGGCATGCTA
Found at i:30455994 original size:10 final size:10
Alignment explanation
Indices: 30455979--30456003 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
30455969 CTTGTTCATA
30455979 TATTTATTAT
1 TATTTATTAT
30455989 TATTTATTAT
1 TATTTATTAT
30455999 TATTT
1 TATTT
30456004 TTCCTAATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (10 bp):
TATTTATTAT
Found at i:30456032 original size:20 final size:22
Alignment explanation
Indices: 30455993--30456032 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
30455983 TATTATTATT
*
30455993 TATTATTATTTTTCCTAATGTA
1 TATTATTATTTTTACTAATGTA
30456015 TATTATT-TTTTTAC-AATG
1 TATTATTATTTTTACTAATG
30456033 ATTATTTGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 6 0.35
22 7 0.41
ACGTcount: A:0.28, C:0.07, G:0.05, T:0.60
Consensus pattern (22 bp):
TATTATTATTTTTACTAATGTA
Found at i:30456038 original size:20 final size:21
Alignment explanation
Indices: 30455992--30456038 Score: 53
Period size: 20 Copynumber: 2.2 Consensus size: 21
30455982 TTATTATTAT
*
30455992 TTATTATTATTTTTCCTAATG
1 TTATTATTATTTTTACTAATG
30456013 TATATTATT-TTTTTAC-AATG
1 T-TATTATTATTTTTACTAATG
30456033 ATTATT
1 -TTATT
30456039 TGAGTTAATG
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
20 8 0.35
21 8 0.35
22 7 0.30
ACGTcount: A:0.28, C:0.06, G:0.04, T:0.62
Consensus pattern (21 bp):
TTATTATTATTTTTACTAATG
Found at i:30458981 original size:1 final size:1
Alignment explanation
Indices: 30458975--30459003 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
30458965 NNNNCTTCGG
30458975 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
30459004 GTTAGGCATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:30459303 original size:10 final size:9
Alignment explanation
Indices: 30459288--30459385 Score: 70
Period size: 9 Copynumber: 10.4 Consensus size: 9
30459278 GCCAGCCTTT
30459288 TTTTTTATTA
1 TTTTTT-TTA
30459298 TTTTTTATTA
1 TTTTTT-TTA
*
30459308 TTATTTTTA
1 TTTTTTTTA
30459317 TTTATTTTTA
1 TTT-TTTTTA
*
30459327 TTTTATTTA
1 TTTTTTTTA
* *
30459336 TTTATTTAA
1 TTTTTTTTA
* *
30459345 TTTGATTTAA
1 TTT-TTTTTA
**
30459355 TTTAATTTA
1 TTTTTTTTA
*
30459364 ATTTTTTTA
1 TTTTTTTTA
*
30459373 ATTTTTTTA
1 TTTTTTTTA
30459382 TTTT
1 TTTT
30459386 ATTTGAGTGT
Statistics
Matches: 74, Mismatches: 12, Indels: 5
0.81 0.13 0.05
Matches are distributed among these distances:
9 41 0.55
10 33 0.45
ACGTcount: A:0.23, C:0.00, G:0.01, T:0.76
Consensus pattern (9 bp):
TTTTTTTTA
Found at i:30459303 original size:13 final size:13
Alignment explanation
Indices: 30459285--30459342 Score: 62
Period size: 13 Copynumber: 4.2 Consensus size: 13
30459275 GCCGCCAGCC
30459285 TTTTTTTTTATTA
1 TTTTTTTTTATTA
*
30459298 TTTTTTATTATTA
1 TTTTTTTTTATTA
* *
30459311 TTTTTATTTATTT
1 TTTTTTTTTATTA
30459324 TTATTTTATTTATTTA
1 TT-TTTT-TTTA-TTA
30459340 TTT
1 TTT
30459343 AATTTGATTT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
13 24 0.67
14 3 0.08
15 5 0.14
16 4 0.11
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (13 bp):
TTTTTTTTTATTA
Found at i:30459319 original size:19 final size:20
Alignment explanation
Indices: 30459290--30459389 Score: 78
Period size: 19 Copynumber: 5.4 Consensus size: 20
30459280 CAGCCTTTTT
30459290 TTTTA-TTATTT-TTTATTA
1 TTTTATTTATTTATTTATTA
30459308 TTATT-TTTATTTATTT-TTA
1 TT-TTATTTATTTATTTATTA
30459327 TTTTATTTATTTATTTA--A
1 TTTTATTTATTTATTTATTA
*
30459345 TTTGATTTAATTTAATTTA--A
1 TTTTATTT-ATTT-ATTTATTA
*
30459365 TTTT-TTTAATT-TTT-TTA
1 TTTTATTTATTTATTTATTA
30459382 TTTTATTT
1 TTTTATTT
30459390 GAGTGTCTAC
Statistics
Matches: 69, Mismatches: 3, Indels: 20
0.75 0.03 0.22
Matches are distributed among these distances:
16 3 0.04
17 5 0.07
18 18 0.26
19 31 0.45
20 12 0.17
ACGTcount: A:0.24, C:0.00, G:0.01, T:0.75
Consensus pattern (20 bp):
TTTTATTTATTTATTTATTA
Found at i:30459332 original size:5 final size:5
Alignment explanation
Indices: 30459285--30459389 Score: 62
Period size: 5 Copynumber: 21.6 Consensus size: 5
30459275 GCCGCCAGCC
*
30459285 TTTTT TTTTA TTATT- TTTTA TTATTA TTTT- TATTTA TTTTTA TTTTA
1 TTTTA TTTTA TT-TTA TTTTA TT-TTA TTTTA T-TTTA -TTTTA TTTTA
* * * * * *
30459332 -TTTA -TTTA TTTAA TTTGA -TTTA ATTTA ATTTA ATTT- TTTTA ATTT-
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
30459377 TTTTA TTTTA TTT
1 TTTTA TTTTA TTT
30459390 GAGTGTCTAC
Statistics
Matches: 83, Mismatches: 7, Indels: 20
0.75 0.06 0.18
Matches are distributed among these distances:
4 20 0.24
5 51 0.61
6 11 0.13
7 1 0.01
ACGTcount: A:0.23, C:0.00, G:0.01, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:30459347 original size:9 final size:9
Alignment explanation
Indices: 30459323--30459389 Score: 73
Period size: 9 Copynumber: 7.3 Consensus size: 9
30459313 TTTATTTATT
*
30459323 TTTATTTTA
1 TTTAATTTA
30459332 TTT-ATTTA
1 TTTAATTTA
30459340 TTTAATTTGA
1 TTTAATTT-A
30459350 TTTAATTTAA
1 TTTAATTT-A
*
30459360 TTTAATTTT
1 TTTAATTTA
*
30459369 TTTAATTTT
1 TTTAATTTA
*
30459378 TTTATTTTA
1 TTTAATTTA
30459387 TTT
1 TTT
30459390 GAGTGTCTAC
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
8 7 0.14
9 26 0.51
10 18 0.35
ACGTcount: A:0.25, C:0.00, G:0.01, T:0.73
Consensus pattern (9 bp):
TTTAATTTA
Found at i:30460433 original size:29 final size:29
Alignment explanation
Indices: 30460377--30460470 Score: 95
Period size: 29 Copynumber: 3.2 Consensus size: 29
30460367 TTATAAGAGT
*
30460377 TTATTTGATTAAAAATAAAAGTACAAAAC
1 TTATTTGATTAAAAATAAAAATACAAAAC
* *
30460406 TTATTTGATTCAAAATAAAAATATAAAA-
1 TTATTTGATTAAAAATAAAAATACAAAAC
*
30460434 --ATTTGATTAAATGTAATAAAAATAGAAAAAC
1 TTATTTGATTAAA---AATAAAAATA-CAAAAC
30460465 TTATTT
1 TTATTT
30460471 AAATTTTTTA
Statistics
Matches: 53, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
26 10 0.19
29 35 0.66
30 4 0.08
33 4 0.08
ACGTcount: A:0.54, C:0.04, G:0.06, T:0.35
Consensus pattern (29 bp):
TTATTTGATTAAAAATAAAAATACAAAAC
Found at i:30464696 original size:9 final size:9
Alignment explanation
Indices: 30464684--30464727 Score: 52
Period size: 9 Copynumber: 4.9 Consensus size: 9
30464674 TGAGAAAGAA
30464684 GATGATGAG
1 GATGATGAG
*
30464693 GATGATGAC
1 GATGATGAG
*
30464702 GAGGATGAG
1 GATGATGAG
*
30464711 GATGACGAG
1 GATGATGAG
*
30464720 GACGATGA
1 GATGATGA
30464728 CAAGGAGGAT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.34, C:0.07, G:0.43, T:0.16
Consensus pattern (9 bp):
GATGATGAG
Found at i:30470650 original size:2 final size:2
Alignment explanation
Indices: 30470643--30470676 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
30470633 ATTACCGTGT
30470643 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
30470677 GTGTATACAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:30473233 original size:60 final size:60
Alignment explanation
Indices: 30473139--30473259 Score: 190
Period size: 60 Copynumber: 2.0 Consensus size: 60
30473129 AAATAAAAAC
* *
30473139 GGGGAGCCATACCTTATGTAGCTCACTCAATAATGACTCTTGTCC-ATTTTTTTTTGACAT
1 GGGGAACCATACCTTATGTAGCTCACTCAATAATGACTCTTGTCCGA-TATTTTTTGACAT
* *
30473199 GGGGAACCATACCTTATGTAGCTCACTCAGTAATGTCTCTTGTCCGATATTTTTTGACAT
1 GGGGAACCATACCTTATGTAGCTCACTCAATAATGACTCTTGTCCGATATTTTTTGACAT
30473259 G
1 G
30473260 CATGTATCGA
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
60 55 0.98
61 1 0.02
ACGTcount: A:0.23, C:0.21, G:0.18, T:0.37
Consensus pattern (60 bp):
GGGGAACCATACCTTATGTAGCTCACTCAATAATGACTCTTGTCCGATATTTTTTGACAT
Found at i:30492421 original size:40 final size:40
Alignment explanation
Indices: 30492366--30492445 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
30492356 TAAACATAGA
30492366 GTAATTGGTTAAATGTGCACATGATTCTTACAACAAACTG
1 GTAATTGGTTAAATGTGCACATGATTCTTACAACAAACTG
30492406 GTAATTGGTTAAATGTGCACATGATTCTTACAACAAACTG
1 GTAATTGGTTAAATGTGCACATGATTCTTACAACAAACTG
30492446 TCTCTTCAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (40 bp):
GTAATTGGTTAAATGTGCACATGATTCTTACAACAAACTG
Found at i:30492849 original size:80 final size:80
Alignment explanation
Indices: 30492728--30492887 Score: 293
Period size: 80 Copynumber: 2.0 Consensus size: 80
30492718 TGAAACTTGC
30492728 ACAATAATATACAAACAACTATAATAAGATGCTGTATAACATACATGAGATAAAGAAGAGTTTGT
1 ACAATAATATACAAACAACTATAATAAGATGCTGTATAACATACATGAGATAAAGAAGAGTTTGT
30492793 AACAATGAATGGGCA
66 AACAATGAATGGGCA
*
30492808 ACAATAATATACAAACAACTATAATAAGATGCTGTATAACATACATGAGATGAAGAAGAGTTTGT
1 ACAATAATATACAAACAACTATAATAAGATGCTGTATAACATACATGAGATAAAGAAGAGTTTGT
* *
30492873 AATAATGTATGGGCA
66 AACAATGAATGGGCA
30492888 TAGTATTCGC
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
80 77 1.00
ACGTcount: A:0.47, C:0.11, G:0.17, T:0.25
Consensus pattern (80 bp):
ACAATAATATACAAACAACTATAATAAGATGCTGTATAACATACATGAGATAAAGAAGAGTTTGT
AACAATGAATGGGCA
Found at i:30495928 original size:29 final size:29
Alignment explanation
Indices: 30495886--30495944 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
30495876 ATGCATCTCA
30495886 AAATTTGAGAATTTTTCACTTTTTTATGC
1 AAATTTGAGAATTTTTCACTTTTTTATGC
30495915 AAATTTGAGAATTTTTCACTTTTTTATGC
1 AAATTTGAGAATTTTTCACTTTTTTATGC
30495944 A
1 A
30495945 CATATGTGCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.29, C:0.10, G:0.10, T:0.51
Consensus pattern (29 bp):
AAATTTGAGAATTTTTCACTTTTTTATGC
Found at i:30495958 original size:29 final size:30
Alignment explanation
Indices: 30495886--30495968 Score: 91
Period size: 29 Copynumber: 2.9 Consensus size: 30
30495876 ATGCATCTCA
*
30495886 AAATTTGAGAA-TTTTTCACTTTTTTATGC
1 AAATATGAGAATTTTTTCACTTTTTTATGC
*
30495915 AAATTTGAGAA-TTTTTCACTTTTTTATGC
1 AAATATGAGAATTTTTTCACTTTTTTATGC
* * **
30495944 ACATATGTGCCTTTTTTC-CTTTTTT
1 AAATATGAGAATTTTTTCACTTTTTT
30495969 CTTCCAAGAG
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 42 0.88
30 6 0.12
ACGTcount: A:0.23, C:0.13, G:0.10, T:0.54
Consensus pattern (30 bp):
AAATATGAGAATTTTTTCACTTTTTTATGC
Found at i:30530902 original size:22 final size:22
Alignment explanation
Indices: 30530877--30530922 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
30530867 TAAAACTACT
* *
30530877 TTTTGATAATATTTAAATATTA
1 TTTTGAAAATATTAAAATATTA
*
30530899 TTTTTAAAATATTAAAATATTA
1 TTTTGAAAATATTAAAATATTA
30530921 TT
1 TT
30530923 CATATATAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (22 bp):
TTTTGAAAATATTAAAATATTA
Found at i:30539724 original size:34 final size:34
Alignment explanation
Indices: 30539686--30539753 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 34
30539676 ACCAACAATT
* *
30539686 GGTTGCTTCA-TGGTTTTTATGTTTTTTTTTTTGG
1 GGTTGCTTCATTGGTTTTT-TATTTTTATTTTTGG
* *
30539720 GGTTGCTTGATTTGTTTTTTATTTTTATTTTTGG
1 GGTTGCTTCATTGGTTTTTTATTTTTATTTTTGG
30539754 TTAATTCAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
34 22 0.76
35 7 0.24
ACGTcount: A:0.07, C:0.04, G:0.22, T:0.66
Consensus pattern (34 bp):
GGTTGCTTCATTGGTTTTTTATTTTTATTTTTGG
Found at i:30540430 original size:19 final size:20
Alignment explanation
Indices: 30540402--30540447 Score: 67
Period size: 19 Copynumber: 2.3 Consensus size: 20
30540392 AGAAGAATAA
*
30540402 AAAATTATTTAAAT-TTTTT
1 AAAATAATTTAAATATTTTT
30540421 AAAATAATTTAAATACTTTTT
1 AAAATAATTTAAATA-TTTTT
30540442 AAAATA
1 AAAATA
30540448 TATGTCATAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 13 0.54
21 11 0.46
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (20 bp):
AAAATAATTTAAATATTTTT
Found at i:30551516 original size:13 final size:13
Alignment explanation
Indices: 30551498--30551527 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
30551488 CAAAAAATAT
30551498 TAAAAAATTATAA
1 TAAAAAATTATAA
30551511 TAAAAAATTATAA
1 TAAAAAATTATAA
30551524 TAAA
1 TAAA
30551528 TAAGATGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (13 bp):
TAAAAAATTATAA
Found at i:30572819 original size:17 final size:16
Alignment explanation
Indices: 30572791--30572833 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
30572781 TATAAAATAT
30572791 ATAAAT-TATGTATAA
1 ATAAATATATGTATAA
*
30572806 ATTAAATATATGTATGA
1 A-TAAATATATGTATAA
30572823 ATATAATATAT
1 ATA-AATATAT
30572834 TACTTTATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 1 0.04
16 7 0.29
17 16 0.67
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.42
Consensus pattern (16 bp):
ATAAATATATGTATAA
Found at i:30573133 original size:203 final size:204
Alignment explanation
Indices: 30572822--30573244 Score: 584
Period size: 203 Copynumber: 2.1 Consensus size: 204
30572812 TATATGTATG
*
30572822 AATATAATATATTACTTTATTATATATATGAAATTAATGACACAATTTATATGTTATAATATTTT
1 AATAT-ATATATTACTTTATTATATATATGAAATTAATGACACAACTTATATG-TATAATA---T
* *
30572887 AAGTTTTATATCAAACTTTGTATAAATAATAACTAAGTATAAACAATATGTTATAAAAATTAAAA
61 AAGTTTTATATCAAAATTTGTATAAATAATAACTAAGTATAAACAATATGTTATAAAAACTAAAA
*
30572952 TGATAACTAACAAAATTATTAAGTGTAATCATATAAATAAAATTTATTATAAATTACAGT-AATA
126 TGATAACTAACAAAATCATTAAGTGTAATCATATAAATAAAATTTATTATAAATTACA-TAAATA
* *
30573016 TTTATGTATAAATTA
190 CTTATGCATAAATTA
* ** *
30573031 AATATATATATTATTTTATTACGTATATATGAAATTAATGGTACAACTTATATG-AT-ATA-ATG
1 AATATATATATTACTTTATTA--TATATATGAAATTAATGACACAACTTATATGTATAATATAAG
* *
30573093 TTTTATATCAAAATTTGTATAAATAATAACTAATTATAAACAATATGTTATAAAAACTATAATGA
64 TTTTATATCAAAATTTGTATAAATAATAACTAAGTATAAACAATATGTTATAAAAACTAAAATGA
* * * * * *
30573158 TGATTAATAAGATCATTAAGTGTAATCATATAAATAAAGTTTATTATAAATTATATAAATACTTA
129 TAACTAACAAAATCATTAAGTGTAATCATATAAATAAAATTTATTATAAATTACATAAATACTTA
30573223 TGCATAAATTA
194 TGCATAAATTA
30573234 AATATATATAT
1 AATATATATAT
30573245 ATATATAATA
Statistics
Matches: 193, Mismatches: 18, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
202 1 0.01
203 139 0.72
207 3 0.02
208 17 0.09
209 5 0.03
210 28 0.15
ACGTcount: A:0.48, C:0.05, G:0.06, T:0.41
Consensus pattern (204 bp):
AATATATATATTACTTTATTATATATATGAAATTAATGACACAACTTATATGTATAATATAAGTT
TTATATCAAAATTTGTATAAATAATAACTAAGTATAAACAATATGTTATAAAAACTAAAATGATA
ACTAACAAAATCATTAAGTGTAATCATATAAATAAAATTTATTATAAATTACATAAATACTTATG
CATAAATTA
Found at i:30585227 original size:31 final size:31
Alignment explanation
Indices: 30585188--30585246 Score: 84
Period size: 32 Copynumber: 1.9 Consensus size: 31
30585178 ATATATAATA
*
30585188 TAAAGACT-AATTTAAACAAAAACGAAATGT
1 TAAAGACTAAATTGAAACAAAAACGAAATGT
*
30585218 TAAATGACTAAATTGAAACAAAAATGAAA
1 TAAA-GACTAAATTGAAACAAAAACGAAA
30585247 AAACAAATCT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 4 0.16
31 4 0.16
32 17 0.68
ACGTcount: A:0.59, C:0.08, G:0.10, T:0.22
Consensus pattern (31 bp):
TAAAGACTAAATTGAAACAAAAACGAAATGT
Found at i:30587393 original size:37 final size:37
Alignment explanation
Indices: 30587344--30587419 Score: 100
Period size: 37 Copynumber: 2.1 Consensus size: 37
30587334 CCCTCCTTTT
* * *
30587344 TCTCAGCTGCTCTCTCACACGTTCGTCTTCCCCTCTC
1 TCTCAGCTGCTCTCTCACACATCCATCTTCCCCTCTC
*
30587381 TCTCAG-TCGCTCTCTCACCCATCCATCTTCCCCTCTC
1 TCTCAGCT-GCTCTCTCACACATCCATCTTCCCCTCTC
30587418 TC
1 TC
30587420 GCAGACACTC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
36 1 0.03
37 33 0.97
ACGTcount: A:0.09, C:0.49, G:0.08, T:0.34
Consensus pattern (37 bp):
TCTCAGCTGCTCTCTCACACATCCATCTTCCCCTCTC
Found at i:30588591 original size:85 final size:83
Alignment explanation
Indices: 30588472--30588661 Score: 247
Period size: 85 Copynumber: 2.3 Consensus size: 83
30588462 TATGAATTTG
* * * *
30588472 TATTTAATTTATCAAAAGACATAATTTACATTTTTTTTAGGAAAAAATGGAAGGCCAT-TTTTCT
1 TATTTAATATATCAAAAGACATAACTTACATTTTTTTTAGAAAAAAATGGAAGACCATCTTTT-T
* * **
30588536 ATTTTCAAAGATATAATTTTC
65 AATTTCAAAG--ACAATCATC
* *
30588557 TATTTAATATATCAAAAGACATAACTTACTTTTTTTTTAGAAAAAAATGGAAGACTATCTTTTTA
1 TATTTAATATATCAAAAGACATAACTTACATTTTTTTTAGAAAAAAATGGAAGACCATCTTTTTA
30588622 ATTTCAAAGACAATCATC
66 ATTTCAAAGACAATCATC
*
30588640 TATTTAATATATCAAAAAACAT
1 TATTTAATATATCAAAAGACAT
30588662 GATTTTTTAT
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
83 27 0.29
85 62 0.67
86 4 0.04
ACGTcount: A:0.42, C:0.11, G:0.07, T:0.41
Consensus pattern (83 bp):
TATTTAATATATCAAAAGACATAACTTACATTTTTTTTAGAAAAAAATGGAAGACCATCTTTTTA
ATTTCAAAGACAATCATC
Found at i:30591906 original size:19 final size:19
Alignment explanation
Indices: 30591884--30591921 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
30591874 AATATAAATT
*
30591884 TTTTTATATAATAAATATA
1 TTTTTATATAAGAAATATA
*
30591903 TTTTTATATTAGAAATATA
1 TTTTTATATAAGAAATATA
30591922 ATCATGATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (19 bp):
TTTTTATATAAGAAATATA
Found at i:30592175 original size:22 final size:24
Alignment explanation
Indices: 30592132--30592175 Score: 56
Period size: 22 Copynumber: 1.9 Consensus size: 24
30592122 TAAATATATA
* *
30592132 AATATAATATTTTTTTACTTAATT
1 AATATAATATTTTTTGAATTAATT
30592156 AATA-AATA-TTTTTGAATTAA
1 AATATAATATTTTTTGAATTAA
30592176 AAATATAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 10 0.56
23 4 0.22
24 4 0.22
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (24 bp):
AATATAATATTTTTTGAATTAATT
Found at i:30592811 original size:30 final size:30
Alignment explanation
Indices: 30592776--30592841 Score: 132
Period size: 30 Copynumber: 2.2 Consensus size: 30
30592766 GAGTGACTGG
30592776 ACATGTGAACAATTTATATGATGAGTGAAA
1 ACATGTGAACAATTTATATGATGAGTGAAA
30592806 ACATGTGAACAATTTATATGATGAGTGAAA
1 ACATGTGAACAATTTATATGATGAGTGAAA
30592836 ACATGT
1 ACATGT
30592842 ACAACGTTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.42, C:0.08, G:0.20, T:0.30
Consensus pattern (30 bp):
ACATGTGAACAATTTATATGATGAGTGAAA
Found at i:30598666 original size:16 final size:16
Alignment explanation
Indices: 30598645--30598684 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
30598635 CGCACCGTTT
30598645 AAAAAGAAAAAAGGAA
1 AAAAAGAAAAAAGGAA
*
30598661 AAAAAG-AAAAGGGAA
1 AAAAAGAAAAAAGGAA
30598676 AAGAAAGAA
1 AA-AAAGAA
30598685 GGCAAAATGC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 10 0.48
16 10 0.48
17 1 0.05
ACGTcount: A:0.78, C:0.00, G:0.23, T:0.00
Consensus pattern (16 bp):
AAAAAGAAAAAAGGAA
Found at i:30598670 original size:15 final size:15
Alignment explanation
Indices: 30598645--30598684 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
30598635 CGCACCGTTT
30598645 AAAAAGAAAAAAGGAA
1 AAAAAG-AAAAAGGAA
*
30598661 AAAAAGAAAAGGGAA
1 AAAAAGAAAAAGGAA
30598676 AAGAAAGAA
1 AA-AAAGAA
30598685 GGCAAAATGC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 10 0.45
16 12 0.55
ACGTcount: A:0.78, C:0.00, G:0.23, T:0.00
Consensus pattern (15 bp):
AAAAAGAAAAAGGAA
Found at i:30601888 original size:85 final size:85
Alignment explanation
Indices: 30601776--30601976 Score: 375
Period size: 85 Copynumber: 2.4 Consensus size: 85
30601766 TTCCACCTGA
* * *
30601776 AAGTTGGCAGCTCTTCTCCTGACAACTGTATCTTCACCATCGTGTAAAGCACATGGAATGTCTGG
1 AAGTTGGTAGCTCCTCTCTTGACAACTGTATCTTCACCATCGTGTAAAGCACATGGAATGTCTGG
30601841 TATGTCAGGCACGCAACTGG
66 TATGTCAGGCACGCAACTGG
30601861 AAGTTGGTAGCTCCTCTCTTGACAACTGTATCTTCACCATCGTGTAAAGCACATGGAATGTCTGG
1 AAGTTGGTAGCTCCTCTCTTGACAACTGTATCTTCACCATCGTGTAAAGCACATGGAATGTCTGG
30601926 TATGTCAGGCACGCAACTGG
66 TATGTCAGGCACGCAACTGG
30601946 AAGTTGGTAGCTCCTCTCTTGACAACTGTAT
1 AAGTTGGTAGCTCCTCTCTTGACAACTGTAT
30601977 AGTCATATCA
Statistics
Matches: 113, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
85 113 1.00
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.29
Consensus pattern (85 bp):
AAGTTGGTAGCTCCTCTCTTGACAACTGTATCTTCACCATCGTGTAAAGCACATGGAATGTCTGG
TATGTCAGGCACGCAACTGG
Found at i:30602932 original size:22 final size:22
Alignment explanation
Indices: 30602906--30602947 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
30602896 AATTATATTA
30602906 TAATATTTATTTTATAATAATG
1 TAATATTTATTTTATAATAATG
*
30602928 TAATATTTATTTTGTAATAA
1 TAATATTTATTTTATAATAA
30602948 ATTATTATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (22 bp):
TAATATTTATTTTATAATAATG
Found at i:30603247 original size:6 final size:6
Alignment explanation
Indices: 30603213--30603270 Score: 53
Period size: 6 Copynumber: 9.2 Consensus size: 6
30603203 TTATTTTTTA
* * * *
30603213 AAAAAT AAAAAAT ATAAAAT TATAAT AAAAAT AAAAAT AAAATAT AACATT
1 AAAAAT -AAAAAT A-AAAAT AAAAAT AAAAAT AAAAAT AAAA-AT AAAAAT
30603264 AAAAAT A
1 AAAAAT A
30603271 TATTGAAGTG
Statistics
Matches: 41, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
6 25 0.61
7 16 0.39
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (6 bp):
AAAAAT
Found at i:30603259 original size:19 final size:19
Alignment explanation
Indices: 30603214--30603270 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 19
30603204 TATTTTTTAA
30603214 AAAATA-AAAAATATAAAAT
1 AAAATATAAAAATA-AAAAT
* *
30603233 TATA-ATAAAAATAAAAAT
1 AAAATATAAAAATAAAAAT
* *
30603251 AAAATATAACATTAAAAAT
1 AAAATATAAAAATAAAAAT
30603270 A
1 A
30603271 TATTGAAGTG
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
18 8 0.27
19 22 0.73
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.25
Consensus pattern (19 bp):
AAAATATAAAAATAAAAAT
Found at i:30603450 original size:23 final size:22
Alignment explanation
Indices: 30603400--30603452 Score: 61
Period size: 23 Copynumber: 2.4 Consensus size: 22
30603390 AATAAAAATT
* *
30603400 AATAATATTTTTTTATATTTTA
1 AATATTATTTTTTTATATATTA
**
30603422 TCTATTATTTTATTTATATATTA
1 AATATTATTTT-TTTATATATTA
30603445 AATATTAT
1 AATATTAT
30603453 AATTTTATCT
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
22 8 0.33
23 16 0.67
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (22 bp):
AATATTATTTTTTTATATATTA
Found at i:30607754 original size:36 final size:36
Alignment explanation
Indices: 30607693--30607769 Score: 109
Period size: 36 Copynumber: 2.1 Consensus size: 36
30607683 ACGTGGGAAG
30607693 CAGAATGAAAACACACAAAACCCTCAAGAGATAAAC
1 CAGAATGAAAACACACAAAACCCTCAAGAGATAAAC
* * ** *
30607729 CAGAGTGAGAACACACAAAGTCCTCAAGAGATAAGC
1 CAGAATGAAAACACACAAAACCCTCAAGAGATAAAC
30607765 CAGAA
1 CAGAA
30607770 GGATATAGCA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.51, C:0.23, G:0.17, T:0.09
Consensus pattern (36 bp):
CAGAATGAAAACACACAAAACCCTCAAGAGATAAAC
Found at i:30607787 original size:36 final size:36
Alignment explanation
Indices: 30607714--30607838 Score: 107
Period size: 36 Copynumber: 3.5 Consensus size: 36
30607704 CACACAAAAC
* * * *
30607714 CCTCAAGAGATAAACCAGAGT-GAGAACACACAAAGT
1 CCTCAAGAGATAAGCCAGAATGGA-AAGACAGAAAGT
30607750 CCTCAAGAGATAAGCCAGAA-GGATATAG-CA-AATAGT
1 CCTCAAGAGATAAGCCAGAATGGA-A-AGACAGAA-AGT
*
30607786 CCTAAAG-GAATAAGCCAGAATGGAAAGACAGAAAGT
1 CCTCAAGAG-ATAAGCCAGAATGGAAAGACAGAAAGT
* *
30607822 CCTCAAAAGCTAAGCCA
1 CCTCAAGAGATAAGCCA
30607839 CATTGAAGAC
Statistics
Matches: 73, Mismatches: 8, Indels: 16
0.75 0.08 0.16
Matches are distributed among these distances:
35 5 0.07
36 61 0.84
37 7 0.10
ACGTcount: A:0.46, C:0.20, G:0.21, T:0.13
Consensus pattern (36 bp):
CCTCAAGAGATAAGCCAGAATGGAAAGACAGAAAGT
Found at i:30607940 original size:153 final size:153
Alignment explanation
Indices: 30607700--30607982 Score: 344
Period size: 153 Copynumber: 1.8 Consensus size: 153
30607690 AAGCAGAATG
* * *
30607700 AAAACACACAAAACCCTCAAGAGATAAACCAGAGTGAGAACACACAAAGTCCTCAAGAGATAAGC
1 AAAACACACAAAACCCTCAAGAGATAAACCAGAGTGAGAACACACAAAGTCCGCAAAAGATAAGA
* * * *
30607765 CAGAAGGATATAGCAAATAGTCCTAAAGGA-ATAAGCCAGAATGGAAAG-ACAG-AAAGTCCTCA
66 CAGAAGGAAATAGCAAACAGTCCT-AAGAACATAAACCAGAAT-GAAAGCA-AGCAAAGTCCTCA
30607827 AAAGCTAAGCCACATTGAAGACACAC
128 AAAGCTAAGCCACATTGAAGACACAC
* * *
30607853 AAAACACACGAAACCCTCCAA-TGATAAGCCAGAGTGAGAACACACAAAGTCCGCAAAAGATAA-
1 AAAACACACAAAACCCT-CAAGAGATAAACCAGAGTGAGAACACACAAAGTCCGCAAAAGATAAG
* * * *
30607916 ACGGCAATGAAATTA-CACACAGTCCTCAGAACATAAACCAGAATGAAAGCAAGCAAAGTCCTCA
65 ACAG-AAGGAAA-TAGCAAACAGTCCTAAGAACATAAACCAGAATGAAAGCAAGCAAAGTCCTCA
30607980 AAA
128 AAA
30607983 CATACCTAAA
Statistics
Matches: 110, Mismatches: 14, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
152 12 0.11
153 93 0.85
154 5 0.05
ACGTcount: A:0.48, C:0.23, G:0.17, T:0.12
Consensus pattern (153 bp):
AAAACACACAAAACCCTCAAGAGATAAACCAGAGTGAGAACACACAAAGTCCGCAAAAGATAAGA
CAGAAGGAAATAGCAAACAGTCCTAAGAACATAAACCAGAATGAAAGCAAGCAAAGTCCTCAAAA
GCTAAGCCACATTGAAGACACAC
Found at i:30608719 original size:2 final size:2
Alignment explanation
Indices: 30608712--30608736 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
30608702 ATATGATTCA
30608712 CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT C
30608737 ATCAGTCATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:30630562 original size:7 final size:7
Alignment explanation
Indices: 30630550--30630576 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
30630540 GAGGCAATAA
30630550 GCATGCT
1 GCATGCT
30630557 GCATGCT
1 GCATGCT
30630564 GCATGCT
1 GCATGCT
30630571 GCATGC
1 GCATGC
30630577 AGACAAAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.15, C:0.30, G:0.30, T:0.26
Consensus pattern (7 bp):
GCATGCT
Found at i:30635869 original size:27 final size:27
Alignment explanation
Indices: 30635790--30635869 Score: 80
Period size: 27 Copynumber: 3.1 Consensus size: 27
30635780 AAAAAGGAAA
30635790 AACAATTATTTAAAGTTTGCTTAACTG
1 AACAATTATTTAAAGTTTGCTTAACTG
* * *
30635817 AATCACTTA---GAAGTATG-TT-ACGTG
1 AA-CAATTATTTAAAGTTTGCTTAAC-TG
30635841 AACAATTATTTAAAGTTTGCTTAACTG
1 AACAATTATTTAAAGTTTGCTTAACTG
30635868 AA
1 AA
30635870 TCACTTTGCC
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
23 7 0.17
24 6 0.15
25 6 0.15
26 6 0.15
27 8 0.20
28 7 0.17
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.38
Consensus pattern (27 bp):
AACAATTATTTAAAGTTTGCTTAACTG
Found at i:30640694 original size:6 final size:6
Alignment explanation
Indices: 30640683--30640728 Score: 56
Period size: 6 Copynumber: 7.5 Consensus size: 6
30640673 TTTCACCTCC
* * *
30640683 CTTTCT CTTTCT CTTTCT CTTTCCT CTCTCT CTCTCT CTCTCT CTT
1 CTTTCT CTTTCT CTTTCT CTTT-CT CTTTCT CTTTCT CTTTCT CTT
30640729 AATCATCATC
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
6 32 0.86
7 5 0.14
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (6 bp):
CTTTCT
Found at i:30640713 original size:2 final size:2
Alignment explanation
Indices: 30640686--30640727 Score: 50
Period size: 2 Copynumber: 21.5 Consensus size: 2
30640676 CACCTCCCTT
* * *
30640686 TC TC TT TC TC TT TC TC TT TC -C TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
30640727 T
1 T
30640728 TAATCATCAT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.00, C:0.43, G:0.00, T:0.57
Consensus pattern (2 bp):
TC
Found at i:30645206 original size:3 final size:3
Alignment explanation
Indices: 30645193--30645226 Score: 59
Period size: 3 Copynumber: 11.0 Consensus size: 3
30645183 CCTCATTGTT
30645193 TTC TTC TTTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC -TTC TTC TTC TTC TTC TTC TTC TTC TTC
30645227 AAAATAGCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 27 0.90
4 3 0.10
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:30646577 original size:2 final size:2
Alignment explanation
Indices: 30646554--30646674 Score: 130
Period size: 2 Copynumber: 63.0 Consensus size: 2
30646544 CTTTTCGTCC
30646554 AT AT A- AT AT A- AT AT AT -T A- AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * **
30646592 AT AT AT AT AT AT AT AT AT NCT -T TT CGT CC AT AT A- AT AT A- AT
1 AT AT AT AT AT AT AT AT AT -AT AT AT -AT AT AT AT AT AT AT AT AT
30646633 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
30646675 CTATCTGTCC
Statistics
Matches: 104, Mismatches: 6, Indels: 18
0.81 0.05 0.14
Matches are distributed among these distances:
1 7 0.07
2 95 0.91
3 2 0.02
ACGTcount: A:0.47, C:0.03, G:0.01, T:0.48
Consensus pattern (2 bp):
AT
Found at i:30646625 original size:67 final size:64
Alignment explanation
Indices: 30646544--30646676 Score: 239
Period size: 65 Copynumber: 2.0 Consensus size: 64
30646534 GTTGGATCTA
30646544 CTTTTCGTCCATATAATATAATATATTAATATATATATATATATATATATATATATATATATATA
1 CTTTTCGTCCATATAATATAATATA-T-ATATATATATATATATATATATATATATATATATATA
30646609 T
64 T
30646610 NCTTTTCGTCCATATAATATAATATATATATATATATATATATATATATATATATATATATATAT
1 -CTTTTCGTCCATATAATATAATATATATATATATATATATATATATATATATATATATATATAT
30646675 CT
1 CT
30646677 ATCTGTCCAG
Statistics
Matches: 66, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
64 2 0.03
65 38 0.58
66 1 0.02
67 25 0.38
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (64 bp):
CTTTTCGTCCATATAATATAATATATATATATATATATATATATATATATATATATATATATAT
Found at i:30667282 original size:18 final size:16
Alignment explanation
Indices: 30667259--30667301 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 16
30667249 ATTAATATGA
30667259 AAAAATATATATTTTATT
1 AAAAATATATA--TTATT
*
30667277 AAAAATCTATATTATT
1 AAAAATATATATTATT
30667293 AAAGAATAT
1 AAA-AATAT
30667302 GTTGAAAGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 8 0.36
17 4 0.18
18 10 0.45
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (16 bp):
AAAAATATATATTATT
Found at i:30684208 original size:19 final size:19
Alignment explanation
Indices: 30684173--30684211 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
30684163 GTAAAGGATG
*
30684173 AAAACGAAAAATCAAACCA
1 AAAACGAAAAATAAAACCA
30684192 AAAAC-AAAAATGAAAACCA
1 AAAACGAAAAAT-AAAACCA
30684211 A
1 A
30684212 GCCAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.72, C:0.18, G:0.05, T:0.05
Consensus pattern (19 bp):
AAAACGAAAAATAAAACCA
Found at i:30712515 original size:24 final size:24
Alignment explanation
Indices: 30712488--30712570 Score: 114
Period size: 24 Copynumber: 3.5 Consensus size: 24
30712478 AGGAGTAGAA
30712488 GATGCTCCAAAAGCAGGAGTGCTT
1 GATGCTCCAAAAGCAGGAGTGCTT
* * *
30712512 GATGCACCAAAAGCAGGAGTACTG
1 GATGCTCCAAAAGCAGGAGTGCTT
*
30712536 GAAG-TGCCAAAAGCAGGAGTGCTT
1 GATGCT-CCAAAAGCAGGAGTGCTT
30712560 GATGCTCCAAA
1 GATGCTCCAAA
30712571 TGTGCCTCCT
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
24 48 0.98
25 1 0.02
ACGTcount: A:0.34, C:0.20, G:0.29, T:0.17
Consensus pattern (24 bp):
GATGCTCCAAAAGCAGGAGTGCTT
Found at i:30712692 original size:24 final size:24
Alignment explanation
Indices: 30712656--30712759 Score: 163
Period size: 24 Copynumber: 4.3 Consensus size: 24
30712646 AGTTGAACCA
30712656 AAGGCAGGGGTGCTCGTGGCACCG
1 AAGGCAGGGGTGCTCGTGGCACCG
*
30712680 AAGGCAGGCGTGCTCGTGGCACCG
1 AAGGCAGGGGTGCTCGTGGCACCG
* * *
30712704 AAGGCAGGGGTGCTTGTTGCTCCG
1 AAGGCAGGGGTGCTCGTGGCACCG
*
30712728 AAGGCAGGGGTGCTCGTTGCACCG
1 AAGGCAGGGGTGCTCGTGGCACCG
30712752 AAGGCAGG
1 AAGGCAGG
30712760 AGTACTGGAA
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 73 1.00
ACGTcount: A:0.17, C:0.24, G:0.43, T:0.15
Consensus pattern (24 bp):
AAGGCAGGGGTGCTCGTGGCACCG
Found at i:30715362 original size:23 final size:26
Alignment explanation
Indices: 30715336--30715392 Score: 75
Period size: 23 Copynumber: 2.3 Consensus size: 26
30715326 ACTAAATAAG
*
30715336 ATTTTAAAAA-C-ATCTTAAAAAA-A
1 ATTTTAAAAACCAATCTAAAAAAATA
30715359 ATTTTAAAAACCAAATCTAAAAAAATA
1 ATTTTAAAAACC-AATCTAAAAAAATA
30715386 ATTTTAA
1 ATTTTAA
30715393 GAAAGGTTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
23 10 0.34
24 1 0.03
26 10 0.34
27 8 0.28
ACGTcount: A:0.60, C:0.09, G:0.00, T:0.32
Consensus pattern (26 bp):
ATTTTAAAAACCAATCTAAAAAAATA
Found at i:30715956 original size:20 final size:20
Alignment explanation
Indices: 30715933--30715981 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
30715923 ATAAATAGTT
30715933 TTTTATATAA-TATTTAAAAA
1 TTTTATA-AATTATTTAAAAA
* *
30715953 TTTTCTAAATTATTTTAAAA
1 TTTTATAAATTATTTAAAAA
30715973 TTTT-TAAAT
1 TTTTATAAAT
30715982 AATCCATTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 7 0.27
20 19 0.73
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (20 bp):
TTTTATAAATTATTTAAAAA
Found at i:30717271 original size:22 final size:22
Alignment explanation
Indices: 30717198--30717272 Score: 60
Period size: 22 Copynumber: 3.2 Consensus size: 22
30717188 ATAAAAACAT
*
30717198 ATTTGATTAAAAATAAAATACAATAA
1 ATTT-ATTAAATATAAAA-A-AA-AA
* * *
30717224 ATTAATTAAATATAATAAAAAT
1 ATTTATTAAATATAAAAAAAAA
* *
30717246 ATTTATTTAATTTAAAAAAAAA
1 ATTTATTAAATATAAAAAAAAA
30717268 ATTTA
1 ATTTA
30717273 AGAAAATTTT
Statistics
Matches: 40, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
22 23 0.57
23 2 0.05
24 1 0.03
25 11 0.28
26 3 0.08
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.37
Consensus pattern (22 bp):
ATTTATTAAATATAAAAAAAAA
Found at i:30717542 original size:20 final size:19
Alignment explanation
Indices: 30717493--30717545 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 19
30717483 GTGAGATTGG
30717493 TATAATAATATATTATTTTAA
1 TATAATAA-ATA-TATTTTAA
*
30717514 T-TATTTAAATATATTTTATA
1 TATA-ATAAATATATTTTA-A
30717534 TATAATAAATAT
1 TATAATAAATAT
30717546 TGTTATGTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
19 7 0.26
20 14 0.52
21 6 0.22
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
TATAATAAATATATTTTAA
Found at i:30719918 original size:30 final size:30
Alignment explanation
Indices: 30719854--30719910 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
30719844 AATCAAGACC
*
30719854 TTATATTTTTATTTTGAGCCAAATAAACCA
1 TTATAGTTTTATTTTGAGCCAAATAAACCA
*
30719884 TTATAGTTTTATTTTGAGTCAAATAAA
1 TTATAGTTTTATTTTGAGCCAAATAAA
30719911 TCTTTATAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.37, C:0.09, G:0.09, T:0.46
Consensus pattern (30 bp):
TTATAGTTTTATTTTGAGCCAAATAAACCA
Found at i:30724375 original size:87 final size:87
Alignment explanation
Indices: 30724229--30724401 Score: 260
Period size: 87 Copynumber: 2.0 Consensus size: 87
30724219 ACTCAAGTTA
* * *
30724229 ATTTTTGTACTCACTTCACTCTCCTAATTTGGTGCAACGTTCACTTCATCTTCTGCTTATAAATA
1 ATTTTTGTACTCACGTCACTATCCTAATTTGGTGCAACGTTCAATTCATCTTCTGCTTATAAATA
30724294 TAACCTTTT-TACTTCAGTACCT
66 TAA-CTTTTCTACTTCAGTACCT
* * *
30724316 ATTTTTGTACTTACGTCATTATCCTAATTTGGTGCAACGTTTAATTCATAC-TCTGCTTATAAAT
1 ATTTTTGTACTCACGTCACTATCCTAATTTGGTGCAACGTTCAATTCAT-CTTCTGCTTATAAAT
30724380 ATAACTTTTCTACTTCAGTACC
65 ATAACTTTTCTACTTCAGTACC
30724402 CACCTCATTC
Statistics
Matches: 78, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
86 5 0.06
87 72 0.92
88 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.09, T:0.44
Consensus pattern (87 bp):
ATTTTTGTACTCACGTCACTATCCTAATTTGGTGCAACGTTCAATTCATCTTCTGCTTATAAATA
TAACTTTTCTACTTCAGTACCT
Found at i:30724581 original size:75 final size:75
Alignment explanation
Indices: 30724492--30724643 Score: 214
Period size: 75 Copynumber: 2.0 Consensus size: 75
30724482 GTTAATTTTT
* * * * *
30724492 GTACCCACCTCATTCTCCTAATTTAATGCATCATTCACTTCATTCTTTGCTTATAAATATAGCCT
1 GTACCCACCTCATTCTCCTAATTTAATGCAACATTCACTTCATCCTCTACTTATAAATACAGCCT
*
30724557 TTCTACTTCA
66 TCCTACTTCA
* * * *
30724567 GTACCCATCTCATTCTCCTGATTTGATGCAACGTTCACTTCATCCTCTACTTATAAATACAGCCT
1 GTACCCACCTCATTCTCCTAATTTAATGCAACATTCACTTCATCCTCTACTTATAAATACAGCCT
30724632 TCCTACTTCA
66 TCCTACTTCA
30724642 GT
1 GT
30724644 TACAACATAC
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
75 67 1.00
ACGTcount: A:0.24, C:0.30, G:0.07, T:0.39
Consensus pattern (75 bp):
GTACCCACCTCATTCTCCTAATTTAATGCAACATTCACTTCATCCTCTACTTATAAATACAGCCT
TCCTACTTCA
Found at i:30727423 original size:75 final size:75
Alignment explanation
Indices: 30727290--30727436 Score: 215
Period size: 75 Copynumber: 2.0 Consensus size: 75
30727280 CACATAAATC
**
30727290 ATCCAAGTAGATTCCATAAACCAAAATGGGAAACACTGCAGACAGCACCAATGTTTTCCATTCCC
1 ATCCAAGTAGATTCCATAAACCAAAATGGGAAACACTGCAGACAGCACCAATACTTTCCATTCCC
30727355 TGAATTAACA
66 TGAATTAACA
* * ** *
30727365 ATCCAAGTGGATTCCATAAGCCAAAAT-GGAGAACACTGCAGACAGCATTAGTACTTTCCATTCC
1 ATCCAAGTAGATTCCATAAACCAAAATGGGA-AACACTGCAGACAGCACCAATACTTTCCATTCC
30727429 CTGAATTA
65 CTGAATTA
30727437 GTAATTCAGT
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
74 3 0.05
75 61 0.95
ACGTcount: A:0.37, C:0.24, G:0.15, T:0.24
Consensus pattern (75 bp):
ATCCAAGTAGATTCCATAAACCAAAATGGGAAACACTGCAGACAGCACCAATACTTTCCATTCCC
TGAATTAACA
Found at i:30730804 original size:27 final size:22
Alignment explanation
Indices: 30730774--30730832 Score: 118
Period size: 22 Copynumber: 2.7 Consensus size: 22
30730764 ATAAGGGTAG
30730774 AATAAAATAATTATTTTATAAA
1 AATAAAATAATTATTTTATAAA
30730796 AATAAAATAATTATTTTATAAA
1 AATAAAATAATTATTTTATAAA
30730818 AATAAAATAATTATT
1 AATAAAATAATTATT
30730833 AATTAATTTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 37 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (22 bp):
AATAAAATAATTATTTTATAAA
Found at i:30731089 original size:40 final size:39
Alignment explanation
Indices: 30731044--30731122 Score: 106
Period size: 40 Copynumber: 2.0 Consensus size: 39
30731034 TATTAATATA
* * *
30731044 TTATTT-ATATTTTAAATGTTATTATTATTATTATTTATTT
1 TTATTTAAT-TTTTAAATATTAATATT-TTATAATTTATTT
30731084 TTATTTAATTTTTAAATATTAATATTTTATAATTTATTT
1 TTATTTAATTTTTAAATATTAATATTTTATAATTTATTT
30731123 AAAATATTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
39 12 0.34
40 21 0.60
41 2 0.06
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.66
Consensus pattern (39 bp):
TTATTTAATTTTTAAATATTAATATTTTATAATTTATTT
Found at i:30731491 original size:35 final size:36
Alignment explanation
Indices: 30731452--30731528 Score: 88
Period size: 35 Copynumber: 2.2 Consensus size: 36
30731442 TATTATATAT
* **
30731452 TATTTTATATTT-TCACTTAAAA-ATTTTAACATTAA
1 TATTTTATATTTAT-AATTAAAATATTAAAACATTAA
*
30731487 TATTTT-TATTTATAATTAAAATATTAAAATATTAA
1 TATTTTATATTTATAATTAAAATATTAAAACATTAA
30731522 TATTTTA
1 TATTTTA
30731529 ATTATTTTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
34 12 0.34
35 23 0.66
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (36 bp):
TATTTTATATTTATAATTAAAATATTAAAACATTAA
Found at i:30745370 original size:9 final size:9
Alignment explanation
Indices: 30745353--30745409 Score: 60
Period size: 9 Copynumber: 6.3 Consensus size: 9
30745343 ATATTTTTAT
*
30745353 TTAATCGTG
1 TTAAACGTG
30745362 TTAAACGTG
1 TTAAACGTG
***
30745371 TTGGTCGTG
1 TTAAACGTG
*
30745380 TTAAATGTG
1 TTAAACGTG
*
30745389 TTAATCGTG
1 TTAAACGTG
30745398 TTAAACGTG
1 TTAAACGTG
30745407 TTA
1 TTA
30745410 TTAATCGTGT
Statistics
Matches: 37, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
9 37 1.00
ACGTcount: A:0.25, C:0.09, G:0.25, T:0.42
Consensus pattern (9 bp):
TTAAACGTG
Found at i:30745380 original size:18 final size:18
Alignment explanation
Indices: 30745353--30745409 Score: 87
Period size: 18 Copynumber: 3.2 Consensus size: 18
30745343 ATATTTTTAT
30745353 TTAATCGTGTTAAACGTG
1 TTAATCGTGTTAAACGTG
** *
30745371 TTGGTCGTGTTAAATGTG
1 TTAATCGTGTTAAACGTG
30745389 TTAATCGTGTTAAACGTG
1 TTAATCGTGTTAAACGTG
30745407 TTA
1 TTA
30745410 TTAATCGTGT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.25, C:0.09, G:0.25, T:0.42
Consensus pattern (18 bp):
TTAATCGTGTTAAACGTG
Found at i:30761381 original size:2 final size:2
Alignment explanation
Indices: 30761374--30761404 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
30761364 ACATGCCTCA
30761374 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
30761405 CCTTACCTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:30771882 original size:3 final size:3
Alignment explanation
Indices: 30771874--30771899 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
30771864 AAGAATCAAA
30771874 GAT GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GA
30771900 GTCGCAGAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.35, T:0.31
Consensus pattern (3 bp):
GAT
Found at i:30780613 original size:27 final size:27
Alignment explanation
Indices: 30780568--30780645 Score: 83
Period size: 27 Copynumber: 2.9 Consensus size: 27
30780558 GTATTATAAG
30780568 AAATAATAAT-TTTAA-ATTTAAAGAT-T
1 AAATAA-AATATTTAATATTTAAA-ATAT
* *
30780594 AATTAAAATATTTAATATTTAAATTAT
1 AAATAAAATATTTAATATTTAAAATAT
30780621 AAATAAAATA-TTAATATTTTAAAAT
1 AAATAAAATATTTAATA-TTTAAAAT
30780646 TTCAATAATT
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
25 3 0.07
26 17 0.39
27 24 0.55
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.44
Consensus pattern (27 bp):
AAATAAAATATTTAATATTTAAAATAT
Found at i:30780630 original size:20 final size:19
Alignment explanation
Indices: 30780607--30780670 Score: 56
Period size: 20 Copynumber: 3.1 Consensus size: 19
30780597 TAAAATATTT
30780607 AATATTTAAATTATAAATAA
1 AATA-TTAAATTATAAATAA
* **
30780627 AATATTAATATTTTAAAATTTC
1 AATATTAA-ATTAT-AAA-TAA
30780649 AATAATTAAATTATAAATAA
1 AAT-ATTAAATTATAAATAA
30780669 AA
1 AA
30780671 AATAAAATAC
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
19 4 0.12
20 11 0.32
21 6 0.18
22 8 0.24
23 5 0.15
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.41
Consensus pattern (19 bp):
AATATTAAATTATAAATAA
Found at i:30780653 original size:27 final size:27
Alignment explanation
Indices: 30780568--30780639 Score: 80
Period size: 26 Copynumber: 2.7 Consensus size: 27
30780558 GTATTATAAG
*
30780568 AAATAATAAT-TTTAA-ATTTAAA-GATT
1 AAATAA-AATATTTAATATTTAAATTA-T
*
30780594 AATTAAAATATTTAATATTTAAATTAT
1 AAATAAAATATTTAATATTTAAATTAT
30780621 AAATAAAATA-TTAATATTT
1 AAATAAAATATTTAATATTT
30780640 TAAAATTTCA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
25 3 0.08
26 19 0.47
27 17 0.43
28 1 0.03
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.44
Consensus pattern (27 bp):
AAATAAAATATTTAATATTTAAATTAT
Found at i:30781028 original size:50 final size:49
Alignment explanation
Indices: 30780971--30781135 Score: 143
Period size: 50 Copynumber: 3.2 Consensus size: 49
30780961 GCACCATATC
* *
30780971 GTGCTCCCTTGGCCTGGGTAGCACTCGGCTCCCCAAGGGAGCACCGTTGA
1 GTGCTCCCTTAGCCTGGG-AGCACTCGGCTCCCCAAGGGAGCACCGTCGA
* * ** *
30781021 GTGCTCCCTAAG-CTAGGGGACCACTCGGCTCCTTAAGGGAGCATCGTCGA
1 GTGCTCCCTTAGCCT--GGGAGCACTCGGCTCCCCAAGGGAGCACCGTCGA
* * * *
30781071 GTGCTCCCCTAGCAATGGGAGCACTCGGTTCCCCTGACCTAGGGAGCACCGTCAA
1 GTGCTCCCTTAGC-CTGGGAGCACTCGGCTCCCC--A---AGGGAGCACCGTCGA
30781126 GTGCTCCCTT
1 GTGCTCCCTT
30781136 GCTGCTCCCT
Statistics
Matches: 89, Mismatches: 17, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
49 2 0.02
50 60 0.67
51 3 0.03
52 2 0.02
55 22 0.25
ACGTcount: A:0.17, C:0.33, G:0.29, T:0.21
Consensus pattern (49 bp):
GTGCTCCCTTAGCCTGGGAGCACTCGGCTCCCCAAGGGAGCACCGTCGA
Found at i:30785791 original size:57 final size:55
Alignment explanation
Indices: 30785720--30785861 Score: 142
Period size: 57 Copynumber: 2.5 Consensus size: 55
30785710 CCACCGTGGG
** * * * *
30785720 GAAGGAAGGTAGGAAAAAGAAAACAAAAAATTAGAAGGCTAAAGCAA-TTGAAGAAGA
1 GAAGGAAGACAGGAAAAAGAAAA-AAAAAAATAAAAGGATAAA--AAGTCGAAGAAGA
*
30785777 GAAGGAAGACAGGAAAAGGAAAAAAATAAAATAAAAGGATAAAAAGGTCGAAGAAGA
1 GAAGGAAGACAGGAAAAAGAAAAAAA-AAAATAAAAGGATAAAAA-GTCGAAGAAGA
* *
30785834 GAAGAAAGACAAGGAAAAACAAAAAAAA
1 GAAGGAAGAC-AGGAAAAAGAAAAAAAA
30785862 GTTTTGGTGG
Statistics
Matches: 71, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
55 2 0.03
56 3 0.04
57 52 0.73
58 14 0.20
ACGTcount: A:0.63, C:0.05, G:0.25, T:0.07
Consensus pattern (55 bp):
GAAGGAAGACAGGAAAAAGAAAAAAAAAAATAAAAGGATAAAAAGTCGAAGAAGA
Found at i:30787094 original size:102 final size:102
Alignment explanation
Indices: 30786918--30787117 Score: 267
Period size: 102 Copynumber: 2.0 Consensus size: 102
30786908 TCAACATTTA
** * * * * *
30786918 GATGAAAAATCACCAACGTTTTAAGATTAAAAAGGAAAGAAAAATTCATTATTTCAGAATATGAG
1 GATGAAAAATCACCAACGTCCTAAGAATAAAAAGGAAAGAAAAATCCATCATTTCAAAATACGAG
* *
30786983 CTCAAATTAAGTCTTTTATTTTTCTATGTAAATTTTG
66 CTCAAATTAAGTCTTTCATTTTTCCATGTAAATTTTG
* * *
30787020 GATGAAAAATCACCAACGTCCTAA-AATAAAAGAGGAGAGAAAAATCCATCGTTTTAAAATACGA
1 GATGAAAAATCACCAACGTCCTAAGAATAAAA-AGGAAAGAAAAATCCATCATTTCAAAATACGA
*
30787084 GTTCAAATTAAGTCTTTCATTTTTCCATGTAAAT
65 GCTCAAATTAAGTCTTTCATTTTTCCATGTAAAT
30787118 CATCTTTAAT
Statistics
Matches: 84, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
101 6 0.07
102 78 0.93
ACGTcount: A:0.42, C:0.12, G:0.13, T:0.33
Consensus pattern (102 bp):
GATGAAAAATCACCAACGTCCTAAGAATAAAAAGGAAAGAAAAATCCATCATTTCAAAATACGAG
CTCAAATTAAGTCTTTCATTTTTCCATGTAAATTTTG
Found at i:30794286 original size:18 final size:18
Alignment explanation
Indices: 30794263--30794309 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
30794253 CATTCCCGCC
* *
30794263 ATGGCCATGATTATGGTT
1 ATGGCCATGATGATGGTG
*
30794281 ATGGCCATGGTGATGGTG
1 ATGGCCATGATGATGGTG
*
30794299 ATGACCATGAT
1 ATGGCCATGAT
30794310 CATGACCCAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.23, C:0.13, G:0.32, T:0.32
Consensus pattern (18 bp):
ATGGCCATGATGATGGTG
Found at i:30796404 original size:2 final size:2
Alignment explanation
Indices: 30796399--30796437 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
30796389 TTTTATATAT
*
30796399 TC TC TC CC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
30796438 AGGGTTTTGT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
TC
Found at i:30803297 original size:29 final size:28
Alignment explanation
Indices: 30803252--30803306 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 28
30803242 AAATGTCAAA
30803252 ATGAGAAAAAATAGATATTT-ATTAAGC
1 ATGAGAAAAAATAGATATTTAATTAAGC
30803279 ATGAGAAAATAAATAGATATTTAATTAA
1 ATGAG-AAA-AAATAGATATTTAATTAA
30803307 TTATCTTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
27 5 0.20
28 3 0.12
29 12 0.48
30 5 0.20
ACGTcount: A:0.55, C:0.02, G:0.13, T:0.31
Consensus pattern (28 bp):
ATGAGAAAAAATAGATATTTAATTAAGC
Found at i:30803347 original size:21 final size:19
Alignment explanation
Indices: 30803322--30803365 Score: 52
Period size: 21 Copynumber: 2.2 Consensus size: 19
30803312 TTAATTTTTA
*
30803322 TATATTTTTAATATAATTAAT
1 TATATTATTAATATAA--AAT
*
30803343 TATATTATTATTATAAAAT
1 TATATTATTAATATAAAAT
30803362 TATA
1 TATA
30803366 GATCTATTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 7 0.33
21 14 0.67
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TATATTATTAATATAAAAT
Found at i:30803362 original size:23 final size:23
Alignment explanation
Indices: 30803319--30803363 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
30803309 ATCTTAATTT
* *
30803319 TTATATATTTTTAATATAATTAA
1 TTATATATTATTAATAAAATTAA
30803342 TTATATTATTATT-ATAAAATTA
1 TTATA-TATTATTAATAAAATTA
30803364 TAGATCTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (23 bp):
TTATATATTATTAATAAAATTAA
Found at i:30807232 original size:17 final size:18
Alignment explanation
Indices: 30807195--30807232 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
30807185 AAAATTTTTA
*
30807195 TTTAAATAATTTTTAATT
1 TTTAAATAATATTTAATT
*
30807213 TTTAAA-AATATTTGATT
1 TTTAAATAATATTTAATT
30807230 TTT
1 TTT
30807233 TATATCTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.61
Consensus pattern (18 bp):
TTTAAATAATATTTAATT
Found at i:30808557 original size:59 final size:59
Alignment explanation
Indices: 30808481--30808715 Score: 298
Period size: 58 Copynumber: 4.0 Consensus size: 59
30808471 TTTTTTTTTT
* * *
30808481 TTTTTTTTGAGTAGTTTTTACGTTGCTTCCTTGCTTGTTGATGTTTTTTAGAGTCAGAC
1 TTTTTTTTGAGTAGTTTTTACTTTGCTTTCTTGCTTGTTGATGTTTTTTAGAGTAAGAC
* * *
30808540 TTTTTTTTGAGTGGTTTTTAC-TTGCTTTCTTGCTTGTTGATGTTTCTTCGAGTAAGAC
1 TTTTTTTTGAGTAGTTTTTACTTTGCTTTCTTGCTTGTTGATGTTTTTTAGAGTAAGAC
* * * *
30808598 TGTTTTTTGAGTAGTTTTGACTTTGCTTTCTTG-TCTATTGATGTTTTTTAGAATAAGACC
1 TTTTTTTTGAGTAGTTTTTACTTTGCTTTCTTGCT-TGTTGATGTTTTTTAGAGTAAGA-C
* * * *
30808658 TTTTTTTT-AGTGGTTATTA-TTTGCTTTCTTGCTCGTTGATGTTTTCTAGAGTAAGAC
1 TTTTTTTTGAGTAGTTTTTACTTTGCTTTCTTGCTTGTTGATGTTTTTTAGAGTAAGAC
30808715 T
1 T
30808716 CAATTAAATC
Statistics
Matches: 152, Mismatches: 20, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
57 2 0.01
58 83 0.55
59 59 0.39
60 8 0.05
ACGTcount: A:0.15, C:0.11, G:0.20, T:0.54
Consensus pattern (59 bp):
TTTTTTTTGAGTAGTTTTTACTTTGCTTTCTTGCTTGTTGATGTTTTTTAGAGTAAGAC
Found at i:30808624 original size:117 final size:117
Alignment explanation
Indices: 30808483--30808715 Score: 328
Period size: 117 Copynumber: 2.0 Consensus size: 117
30808473 TTTTTTTTTT
* * * *
30808483 TTTTTTGAGTAGTTTTTACGTTGCTTCCTTG-CTTGTTGATGTTTTTTAGAGTCAGA-CTTTTTT
1 TTTTTTGAGTAGTTTTGACGTTGCTTCCTTGTC-TATTGATGTTTTTTAGAATAAGACCTTTTTT
* * *
30808546 TTGAGTGGTTTTTACTTGCTTTCTTGCTTGTTGATG-TTTCTTCGAGTAAGACTG
65 TT-AGTGGTTATTACTTGCTTTCTTGCTCGTTGATGTTTTC-TAGAGTAAGACTG
* *
30808600 TTTTTTGAGTAGTTTTGACTTTGCTTTCTTGTCTATTGATGTTTTTTAGAATAAGACCTTTTTTT
1 TTTTTTGAGTAGTTTTGACGTTGCTTCCTTGTCTATTGATGTTTTTTAGAATAAGACCTTTTTTT
*
30808665 TAGTGGTTATTATTTGCTTTCTTGCTCGTTGATGTTTTCTAGAGTAAGACT
66 TAGTGGTTATTACTTGCTTTCTTGCTCGTTGATGTTTTCTAGAGTAAGACT
30808716 CAATTAAATC
Statistics
Matches: 103, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
117 89 0.86
118 14 0.14
ACGTcount: A:0.15, C:0.11, G:0.20, T:0.54
Consensus pattern (117 bp):
TTTTTTGAGTAGTTTTGACGTTGCTTCCTTGTCTATTGATGTTTTTTAGAATAAGACCTTTTTTT
TAGTGGTTATTACTTGCTTTCTTGCTCGTTGATGTTTTCTAGAGTAAGACTG
Found at i:30824854 original size:19 final size:20
Alignment explanation
Indices: 30824829--30824886 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 20
30824819 ACATCCAAAT
*
30824829 CCTAAAATCGGTTTACCAAC
1 CCTAAAATCTGTTTACCAAC
*
30824849 CC-AAAA-CTATTTCACCAAAC
1 CCTAAAATCTGTTT-ACC-AAC
30824869 CCTAAAATCTGTTTACCA
1 CCTAAAATCTGTTTACCA
30824887 CACATCTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
18 4 0.13
19 7 0.23
20 8 0.26
21 7 0.23
22 5 0.16
ACGTcount: A:0.38, C:0.31, G:0.05, T:0.26
Consensus pattern (20 bp):
CCTAAAATCTGTTTACCAAC
Found at i:30824886 original size:21 final size:21
Alignment explanation
Indices: 30824823--30824886 Score: 71
Period size: 21 Copynumber: 3.1 Consensus size: 21
30824813 AAAAAGACAT
* *
30824823 CCAAATCCTAAAATCGGTTTA
1 CCAAACCCTAAAATCTGTTTA
*
30824844 CC-AACCC-AAAA-CTATTTCA
1 CCAAACCCTAAAATCTGTTT-A
30824863 CCAAACCCTAAAATCTGTTTA
1 CCAAACCCTAAAATCTGTTTA
30824884 CCA
1 CCA
30824887 CACATCTTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
18 4 0.11
19 7 0.20
20 9 0.26
21 10 0.29
22 5 0.14
ACGTcount: A:0.39, C:0.31, G:0.05, T:0.25
Consensus pattern (21 bp):
CCAAACCCTAAAATCTGTTTA
Found at i:30830642 original size:33 final size:30
Alignment explanation
Indices: 30830582--30830645 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 30
30830572 AAAAATTAAA
*
30830582 ATAATTAATAAAATATCTATTTATTCTCTC
1 ATAATTAATAAAATATATATTTATTCTCTC
*
30830612 ATAATTAATATATATATATATATTTTTTCTCTC
1 ATAATTAATA-A-A-ATATATATTTATTCTCTC
30830645 A
1 A
30830646 CTTTCACATT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 10 0.34
31 1 0.03
32 1 0.03
33 17 0.59
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.50
Consensus pattern (30 bp):
ATAATTAATAAAATATATATTTATTCTCTC
Found at i:30831013 original size:30 final size:28
Alignment explanation
Indices: 30830949--30831015 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 28
30830939 TTTTTTATTC
* * *
30830949 TTTAACTTCAATAAAAAAAATCTCAATT
1 TTTAATTTCAATAAAAAAAATCTAAATA
*
30830977 TCTTAATTTCAATAAAAAAATTATTTAAATA
1 T-TTAATTTCAATAAAAAAA--ATCTAAATA
30831008 TTTAATTT
1 TTTAATTT
30831016 TAAATCTATG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
28 1 0.03
29 17 0.53
30 7 0.22
31 7 0.22
ACGTcount: A:0.48, C:0.09, G:0.00, T:0.43
Consensus pattern (28 bp):
TTTAATTTCAATAAAAAAAATCTAAATA
Found at i:30841358 original size:62 final size:63
Alignment explanation
Indices: 30841224--30841368 Score: 190
Period size: 62 Copynumber: 2.3 Consensus size: 63
30841214 AACCATTCGT
* * * *
30841224 AAGGATTCTTTGTATTCCTAAGCCTTCGATAATGAAGCATATTGTAGTGAAGAACTGTCCATA
1 AAGGAATCCTTGTATTCCTAAGCCTTCGATAATCAAGCATATTGTAGTGAAGAACAGTCCATA
* *
30841287 AA--AATTCCTTGTATTCCTAAGCCTTTGATAATCAAGCATATTGTAGTTAAGAACCAG-CCA-A
1 AAGGAA-TCCTTGTATTCCTAAGCCTTCGATAATCAAGCATATTGTAGTGAAGAA-CAGTCCATA
30841348 AAGGAATCCTTGTATTCCTAA
1 AAGGAATCCTTGTATTCCTAA
30841369 CAGTTATACT
Statistics
Matches: 72, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
61 4 0.06
62 62 0.86
63 6 0.08
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (63 bp):
AAGGAATCCTTGTATTCCTAAGCCTTCGATAATCAAGCATATTGTAGTGAAGAACAGTCCATA
Found at i:30843698 original size:5 final size:5
Alignment explanation
Indices: 30843688--30843718 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
30843678 AGGCAGCCAT
30843688 CCAAC CCAAC CCAAC CCAAC CCAAC CCAAC C
1 CCAAC CCAAC CCAAC CCAAC CCAAC CCAAC C
30843719 AACTAGCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.39, C:0.61, G:0.00, T:0.00
Consensus pattern (5 bp):
CCAAC
Found at i:30847222 original size:39 final size:39
Alignment explanation
Indices: 30847144--30847252 Score: 121
Period size: 39 Copynumber: 2.8 Consensus size: 39
30847134 TGTTCAGTTG
* * * * *
30847144 CTCATCTATCTAAATTCTTTTTCTCGCTTAATTAGAGCC
1 CTCATCTATCTCAATACTTTTCCTCCCTTGATTAGAGCC
* * *
30847183 CTTATCTATCTTAATA-TGTTTCCTCCCTTGATTATAGCC
1 CTCATCTATCTCAATACT-TTTCCTCCCTTGATTAGAGCC
*
30847222 CTCATCTATCTCAATACTTTTTCTCCCTTGA
1 CTCATCTATCTCAATACTTTTCCTCCCTTGA
30847253 ATGTTCTGGA
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
38 1 0.02
39 56 0.97
40 1 0.02
ACGTcount: A:0.21, C:0.28, G:0.06, T:0.45
Consensus pattern (39 bp):
CTCATCTATCTCAATACTTTTCCTCCCTTGATTAGAGCC
Found at i:30880244 original size:29 final size:29
Alignment explanation
Indices: 30880175--30880272 Score: 84
Period size: 25 Copynumber: 3.5 Consensus size: 29
30880165 ACAAAAATTT
30880175 AAATAAATTTTTATATTTTTATTATGTTGAATC
1 AAATAAA-TTTTATATTTTTATT-T-TT-AATC
*
30880208 --AT-ATTTTTATATTTTTATTTTTAATC
1 AAATAAATTTTATATTTTTATTTTTAATC
*
30880234 AAATAAA-TTT-TA--TTTATTTTAAATC
1 AAATAAATTTTATATTTTTATTTTTAATC
*
30880259 AAAAAAATTTTATA
1 AAATAAATTTTATA
30880273 ATTTATAATT
Statistics
Matches: 56, Mismatches: 4, Indels: 16
0.74 0.05 0.21
Matches are distributed among these distances:
25 18 0.32
26 7 0.12
27 6 0.11
28 6 0.11
29 16 0.29
30 1 0.02
31 2 0.04
ACGTcount: A:0.40, C:0.03, G:0.02, T:0.55
Consensus pattern (29 bp):
AAATAAATTTTATATTTTTATTTTTAATC
Found at i:30894138 original size:22 final size:21
Alignment explanation
Indices: 30894113--30894159 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
30894103 CCTTTAATTA
*
30894113 AATTTTCTAATTATTATTATAT
1 AATTTTATAATTATTATTAT-T
* *
30894135 AATTTTATTATTTTTATTATT
1 AATTTTATAATTATTATTATT
30894156 AATT
1 AATT
30894160 AAAAAAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 5 0.23
22 17 0.77
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (21 bp):
AATTTTATAATTATTATTATT
Found at i:30901643 original size:2 final size:2
Alignment explanation
Indices: 30901631--30901662 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
30901621 CTTGCTTTCC
*
30901631 TA TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
30901663 GAGAGAGAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:30901667 original size:2 final size:2
Alignment explanation
Indices: 30901662--30901691 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
30901652 ATATATATAT
30901662 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
30901692 TAGTTATCTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:30901750 original size:2 final size:2
Alignment explanation
Indices: 30901745--30901780 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
30901735 ATATATATAT
30901745 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
30901781 TTATTATCTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:30907790 original size:2 final size:2
Alignment explanation
Indices: 30907783--30907825 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
30907773 CCGTTATGAA
30907783 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
30907825 A
1 A
30907826 TCGATTGNNN
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:30907852 original size:2 final size:2
Alignment explanation
Indices: 30907845--30907908 Score: 89
Period size: 2 Copynumber: 33.0 Consensus size: 2
30907835 NNNNNNNNNN
*
30907845 AG AG AG AG CG AG AG AG AG AG CA- AG AG AG AG A- AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG -AG AG AG AG AG AG AG AG AG AG AG
30907886 AG A- AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG
30907909 GAAAGATCGA
Statistics
Matches: 56, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
1 3 0.05
2 52 0.93
3 1 0.02
ACGTcount: A:0.50, C:0.03, G:0.47, T:0.00
Consensus pattern (2 bp):
AG
Found at i:30910327 original size:3 final size:3
Alignment explanation
Indices: 30910319--30910349 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
30910309 AAAGTAAACA
30910319 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
30910350 TAAATAGAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:30910644 original size:61 final size:59
Alignment explanation
Indices: 30910536--30910654 Score: 159
Period size: 61 Copynumber: 1.9 Consensus size: 59
30910526 TTTTATTTGA
30910536 ATTAATAATTTAATAAAAAATTATTTGAAAAGCCCATTAAAAAATATATATAACATATTGT
1 ATTAATAATTTAATAAAAAATTATTTG--AAGCCCATTAAAAAATATATATAACATATTGT
* * *
30910597 ATTAATAATTTAATAAAAAATTATTTTG-GGTCTCATTAAAAATATATATATAATATAT
1 ATTAATAATTTAATAAAAAATTA-TTTGAAG-CCCATTAAAAA-ATATATATAACATAT
30910655 AGGAATTTTT
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
59 1 0.02
60 10 0.19
61 37 0.71
62 4 0.08
ACGTcount: A:0.50, C:0.05, G:0.05, T:0.39
Consensus pattern (59 bp):
ATTAATAATTTAATAAAAAATTATTTGAAGCCCATTAAAAAATATATATAACATATTGT
Done.