Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36364294
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2168405 characters in sequence are not A, C, G, or T
File 85 of 91
Found at i:32448586 original size:104 final size:104
Alignment explanation
Indices: 32448478--32448674 Score: 286
Period size: 104 Copynumber: 1.9 Consensus size: 104
32448468 GATAAATGTC
* * * *
32448478 TTTTATTATTTCAATGTGAGTAATATTATTTTGTCTGGTTTTTTAATGCCCAATTACTCATAAAT
1 TTTTATTACTTCAATGTGAGTAATATTATTTTATCTGATTTTTTAATGCCCAACTACTCATAAAT
32448543 GACACAGTGCAATAAATAATAATTTTATAAGTATTTATT
66 GACACAGTGCAATAAATAATAATTTTATAAGTATTTATT
* * * * *
32448582 TTTTATTACTTCAATGTGAGTAATATTATTTTATCTGATTTTTTATTGTCCGACTATTTATAAAT
1 TTTTATTACTTCAATGTGAGTAATATTATTTTATCTGATTTTTTAATGCCCAACTACTCATAAAT
* * *
32448647 GAGATAGTGTAATAAATAATAATTTTAT
66 GACACAGTGCAATAAATAATAATTTTAT
32448675 TTGCATTTTT
Statistics
Matches: 81, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
104 81 1.00
ACGTcount: A:0.34, C:0.08, G:0.11, T:0.48
Consensus pattern (104 bp):
TTTTATTACTTCAATGTGAGTAATATTATTTTATCTGATTTTTTAATGCCCAACTACTCATAAAT
GACACAGTGCAATAAATAATAATTTTATAAGTATTTATT
Found at i:32461281 original size:29 final size:31
Alignment explanation
Indices: 32461249--32461320 Score: 78
Period size: 29 Copynumber: 2.4 Consensus size: 31
32461239 TATTCAAGAT
32461249 AATTCAAATAAATTATTATTATTTT-CTT-A
1 AATTCAAATAAATTATTATTATTTTACTTCA
* * * * *
32461278 AATTTAATTTAATTTTTATTATTTTATTTCA
1 AATTCAAATAAATTATTATTATTTTACTTCA
32461309 AA-TCAAATAAAT
1 AATTCAAATAAAT
32461321 ATTTATAATT
Statistics
Matches: 33, Mismatches: 8, Indels: 3
0.75 0.18 0.07
Matches are distributed among these distances:
29 21 0.64
30 9 0.27
31 3 0.09
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.53
Consensus pattern (31 bp):
AATTCAAATAAATTATTATTATTTTACTTCA
Found at i:32461879 original size:31 final size:28
Alignment explanation
Indices: 32461815--32461880 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 28
32461805 AATATAAAAA
32461815 AATAAATATTATTTTAATTAAATATAATT
1 AATAAA-ATTATTTTAATTAAATATAATT
32461844 -ATAAAATTA-TTTAATTTAAATAATATATAT
1 AATAAAATTATTTTAA-TTAAAT-ATA-AT-T
32461874 AATAAAA
1 AATAAAA
32461881 ATTTAAATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
26 5 0.16
27 10 0.31
28 8 0.25
29 2 0.06
30 1 0.03
31 6 0.19
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (28 bp):
AATAAAATTATTTTAATTAAATATAATT
Found at i:32461890 original size:30 final size:29
Alignment explanation
Indices: 32461804--32461891 Score: 72
Period size: 30 Copynumber: 2.9 Consensus size: 29
32461794 TAGTGTTAGG
* * * *
32461804 TAATATAAAAAAATAAATA-TTATTTTAAT
1 TAATATAATAATA-AAATATTTAATTTAAA
*
32461833 TAAATATAATTATAAAATTATTTAATTTAAA
1 T-AATATAATAATAAAA-TATTTAATTTAAA
32461864 TAATATATATAATAAAA-ATTTAAATTTA
1 TAATATA-ATAATAAAATATTT-AATTTA
32461892 TCTAAAATTT
Statistics
Matches: 48, Mismatches: 6, Indels: 9
0.76 0.10 0.14
Matches are distributed among these distances:
29 8 0.17
30 23 0.48
31 17 0.35
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (29 bp):
TAATATAATAATAAAATATTTAATTTAAA
Found at i:32468947 original size:62 final size:62
Alignment explanation
Indices: 32468850--32468974 Score: 250
Period size: 62 Copynumber: 2.0 Consensus size: 62
32468840 TGGTTCTTTA
32468850 TCGACATAAAATCTTTTCTTCATATGTACTTGGAACAAAGGATATATTTTGCTCTTATCAAG
1 TCGACATAAAATCTTTTCTTCATATGTACTTGGAACAAAGGATATATTTTGCTCTTATCAAG
32468912 TCGACATAAAATCTTTTCTTCATATGTACTTGGAACAAAGGATATATTTTGCTCTTATCAAG
1 TCGACATAAAATCTTTTCTTCATATGTACTTGGAACAAAGGATATATTTTGCTCTTATCAAG
32468974 T
1 T
32468975 AATTTCCCTG
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 63 1.00
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (62 bp):
TCGACATAAAATCTTTTCTTCATATGTACTTGGAACAAAGGATATATTTTGCTCTTATCAAG
Found at i:32475122 original size:14 final size:13
Alignment explanation
Indices: 32475082--32475127 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
32475072 AGGATTGTAC
32475082 ATTTTTAAAATAT
1 ATTTTTAAAATAT
* *
32475095 ACTATTAAAA-AT
1 ATTTTTAAAATAT
32475107 ATTTTTAATAATAT
1 ATTTTTAA-AATAT
32475121 ATTTTTA
1 ATTTTTA
32475128 TATTTTTTAC
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
12 8 0.30
13 10 0.37
14 9 0.33
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (13 bp):
ATTTTTAAAATAT
Found at i:32476967 original size:13 final size:13
Alignment explanation
Indices: 32476949--32476974 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32476939 AGATGATGCA
32476949 TTTATATATATAT
1 TTTATATATATAT
32476962 TTTATATATATAT
1 TTTATATATATAT
32476975 ATCTTTAGAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TTTATATATATAT
Found at i:32476971 original size:15 final size:16
Alignment explanation
Indices: 32476951--32476981 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
32476941 ATGATGCATT
32476951 TATATATATAT-TTTA
1 TATATATATATCTTTA
32476966 TATATATATATCTTTA
1 TATATATATATCTTTA
32476982 GACAAAATCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (16 bp):
TATATATATATCTTTA
Found at i:32477080 original size:23 final size:22
Alignment explanation
Indices: 32477050--32477094 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
32477040 ATAATGCTTT
* *
32477050 AAAAATTTCATTGAATTATTTTA
1 AAAAATTTAATTAAATT-TTTTA
32477073 AAAAATTTAATTAAATTTTTTA
1 AAAAATTTAATTAAATTTTTTA
32477095 GTTTTAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (22 bp):
AAAAATTTAATTAAATTTTTTA
Found at i:32477137 original size:23 final size:23
Alignment explanation
Indices: 32477075--32477146 Score: 67
Period size: 23 Copynumber: 3.1 Consensus size: 23
32477065 TTATTTTAAA
*
32477075 AAATTTAATTAAATTTTTTAGTTTT
1 AAATTTAAATAAA-TTTTTA-TTTT
* *
32477100 AAA--AAAATTATATTTTTATTTT
1 AAATTTAAA-TAAATTTTTATTTT
*
32477122 AAATTTAAATAAATTTTTATATT
1 AAATTTAAATAAATTTTTATTTT
32477145 AA
1 AA
32477147 TAATTNGAAC
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
22 7 0.18
23 22 0.58
24 6 0.16
25 3 0.08
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.54
Consensus pattern (23 bp):
AAATTTAAATAAATTTTTATTTT
Found at i:32477630 original size:2 final size:2
Alignment explanation
Indices: 32477623--32477667 Score: 72
Period size: 2 Copynumber: 22.0 Consensus size: 2
32477613 TGGAAAAATA
*
32477623 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AG AT AT AT AGT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT
32477666 AT
1 AT
32477668 TCAATCCAAG
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
2 38 0.95
3 2 0.05
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (2 bp):
AT
Found at i:32480091 original size:15 final size:15
Alignment explanation
Indices: 32480071--32480100 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
32480061 GAGTAATGTT
*
32480071 ATAATTAAAATAATA
1 ATAATTAAAAAAATA
32480086 ATAATTAAAAAAATA
1 ATAATTAAAAAAATA
32480101 TTTTTTCTCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
ATAATTAAAAAAATA
Found at i:32490907 original size:15 final size:14
Alignment explanation
Indices: 32490885--32490919 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
32490875 ATTATTTTAT
32490885 AAAAAACTATTAAA
1 AAAAAACTATTAAA
*
32490899 AAAATAACTTTTAAA
1 AAAA-AACTATTAAA
32490914 AAAAAA
1 AAAAAA
32490920 AACAAAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.23
Consensus pattern (14 bp):
AAAAAACTATTAAA
Found at i:32491566 original size:23 final size:23
Alignment explanation
Indices: 32491531--32491574 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
32491521 ACTCCTTGAC
*
32491531 AAAATAAATAACCTATTAAAAATG
1 AAAATAAAAAACCTA-TAAAAATG
32491555 AAAA-AAAAAACCTATAAAAA
1 AAAATAAAAAACCTATAAAAA
32491575 CCAAAACCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 6 0.32
23 9 0.47
24 4 0.21
ACGTcount: A:0.70, C:0.09, G:0.02, T:0.18
Consensus pattern (23 bp):
AAAATAAAAAACCTATAAAAATG
Found at i:32491580 original size:22 final size:24
Alignment explanation
Indices: 32491530--32491580 Score: 61
Period size: 22 Copynumber: 2.2 Consensus size: 24
32491520 CACTCCTTGA
* *
32491530 CAAAATAAATAACCTATTAAAAAT
1 CAAAATAAAAAACCTATTAAAAAC
*
32491554 GAAAA-AAAAAACCTA-TAAAAAC
1 CAAAATAAAAAACCTATTAAAAAC
32491576 CAAAA
1 CAAAA
32491581 CCTTTTTGTT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
22 10 0.43
23 9 0.39
24 4 0.17
ACGTcount: A:0.69, C:0.14, G:0.02, T:0.16
Consensus pattern (24 bp):
CAAAATAAAAAACCTATTAAAAAC
Found at i:32500038 original size:15 final size:16
Alignment explanation
Indices: 32500020--32500049 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32500010 TTATTATGTG
32500020 GATTTT-ATTTTTAAT
1 GATTTTAATTTTTAAT
32500035 GATTTTAATTTTTAA
1 GATTTTAATTTTTAA
32500050 AAATTAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (16 bp):
GATTTTAATTTTTAAT
Found at i:32501552 original size:2 final size:2
Alignment explanation
Indices: 32501545--32501596 Score: 63
Period size: 2 Copynumber: 26.0 Consensus size: 2
32501535 GCTTAATTTC
*
32501545 CT CT CT CT CT CT CT NAT -T ACT -T CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT -CT CT -CT CT CT CT CT CT CT CT CT CT CT CT
32501587 CT CT CT CT CT
1 CT CT CT CT CT
32501597 GTCCCTTCTC
Statistics
Matches: 45, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
1 2 0.04
2 41 0.91
3 2 0.04
ACGTcount: A:0.04, C:0.44, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:32509012 original size:20 final size:19
Alignment explanation
Indices: 32508967--32509017 Score: 50
Period size: 20 Copynumber: 2.6 Consensus size: 19
32508957 TAATTATAAA
*
32508967 TAATTTATAAAATAAAAAT
1 TAATATATAAAATAAAAAT
* *
32508986 GATATATATAAAATTAAAATT
1 TA-ATATATAAAA-TAAAAAT
32509007 TAATAT-TAAAA
1 TAATATATAAAA
32509018 ATTATTATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 6 0.23
20 13 0.50
21 7 0.27
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (19 bp):
TAATATATAAAATAAAAAT
Found at i:32514363 original size:146 final size:144
Alignment explanation
Indices: 32514110--32514380 Score: 479
Period size: 146 Copynumber: 1.9 Consensus size: 144
32514100 AATTAATCTT
32514110 AAGTCAGATTATTGGATTTGGATGGTACAGTAATTAAAAGTTTTATACACTTGTTTATCCAATGG
1 AAGTCAGATTATTGGATTTGGATGGTACAGTAATTAAAAGTTTTATACACTTGTTTATCCAATGG
32514175 ATGCCCATGACTTCTTTCCAAAGTAATATTGACTGATAAAGATTGTGCGCTTATATTTGAATTTA
66 ATGCCCATGACTTCTTTCCAAAGTAATATTGACTGATAAAGATTGT--GCTTATATTTGAATTTA
32514240 AACTACAATTTATCGC
129 AACTACAATTTATCGC
* * * *
32514256 AAGTCAGATTATTGGATTTTGATGGTACATTAATTGAAAGTTTTATACACTTGTTTATCCAATTG
1 AAGTCAGATTATTGGATTTGGATGGTACAGTAATTAAAAGTTTTATACACTTGTTTATCCAATGG
*
32514321 ATGCCCATGACTTCTTTCCAAAGTAATATTGACTGATAAAGATTGTGTTTATATTTGAAT
66 ATGCCCATGACTTCTTTCCAAAGTAATATTGACTGATAAAGATTGTGCTTATATTTGAAT
32514381 ATTGAATGCT
Statistics
Matches: 120, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
144 13 0.11
146 107 0.89
ACGTcount: A:0.32, C:0.13, G:0.16, T:0.39
Consensus pattern (144 bp):
AAGTCAGATTATTGGATTTGGATGGTACAGTAATTAAAAGTTTTATACACTTGTTTATCCAATGG
ATGCCCATGACTTCTTTCCAAAGTAATATTGACTGATAAAGATTGTGCTTATATTTGAATTTAAA
CTACAATTTATCGC
Found at i:32563317 original size:24 final size:24
Alignment explanation
Indices: 32563290--32563347 Score: 107
Period size: 24 Copynumber: 2.4 Consensus size: 24
32563280 TTAGGTTGTT
*
32563290 ACACGTCATGTACAAAAACATGTG
1 ACACGCCATGTACAAAAACATGTG
32563314 ACACGCCATGTACAAAAACATGTG
1 ACACGCCATGTACAAAAACATGTG
32563338 ACACGCCATG
1 ACACGCCATG
32563348 GTTAGGTTGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.40, C:0.26, G:0.17, T:0.17
Consensus pattern (24 bp):
ACACGCCATGTACAAAAACATGTG
Found at i:32563360 original size:21 final size:21
Alignment explanation
Indices: 32563334--32563378 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
32563324 TACAAAAACA
*
32563334 TGTGACACGCCATGGTTAGGT
1 TGTGACACGCCATAGTTAGGT
*
32563355 TGTGACACGCTATAGTTAGGT
1 TGTGACACGCCATAGTTAGGT
32563376 TGT
1 TGT
32563379 TAAACGCAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.20, C:0.16, G:0.31, T:0.33
Consensus pattern (21 bp):
TGTGACACGCCATAGTTAGGT
Found at i:32563408 original size:45 final size:45
Alignment explanation
Indices: 32563359--32563478 Score: 129
Period size: 45 Copynumber: 2.7 Consensus size: 45
32563349 TTAGGTTGTG
32563359 ACACGCTATAGTTAGGTTGTTAAACG-CAATGTACAAAAACATGTA
1 ACACGCTATAGTTAGGTTGTTAAACGTC-ATGTACAAAAACATGTA
* * * * *
32563404 ACACGGC-ATGGTTATGTTGTTACATGTCATGTACAAAAACATGTG
1 ACAC-GCTATAGTTAGGTTGTTAAACGTCATGTACAAAAACATGTA
* *
32563449 ACAC-ATCATAGTTAGGTTGTTACACGTCAT
1 ACACGCT-ATAGTTAGGTTGTTAAACGTCAT
32563479 AATTAGGTTG
Statistics
Matches: 62, Mismatches: 9, Indels: 8
0.78 0.11 0.10
Matches are distributed among these distances:
45 59 0.95
46 3 0.05
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (45 bp):
ACACGCTATAGTTAGGTTGTTAAACGTCATGTACAAAAACATGTA
Found at i:32563495 original size:21 final size:21
Alignment explanation
Indices: 32563449--32563500 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
32563439 AAAACATGTG
* *
32563449 ACACATCATAGTTAGGTTGTT
1 ACACGTCATAATTAGGTTGTT
32563470 ACACGTCATAATTAGGTTGTT
1 ACACGTCATAATTAGGTTGTT
*
32563491 ACACGCCATA
1 ACACGTCATA
32563501 TTAAAAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (21 bp):
ACACGTCATAATTAGGTTGTT
Found at i:32563519 original size:30 final size:30
Alignment explanation
Indices: 32563485--32563547 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
32563475 TCATAATTAG
32563485 GTTGTTACACGCCATATTAAAAAAAATATT
1 GTTGTTACACGCCATATTAAAAAAAATATT
* * * *
32563515 GTTGTTACACGTCATATTCAAAAACATTTT
1 GTTGTTACACGCCATATTAAAAAAAATATT
32563545 GTT
1 GTT
32563548 ACACTTTAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.38
Consensus pattern (30 bp):
GTTGTTACACGCCATATTAAAAAAAATATT
Found at i:32566491 original size:22 final size:22
Alignment explanation
Indices: 32566452--32566506 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
32566442 ACTTAAATGT
*
32566452 AAAAATATATACTAAAATGAAAC
1 AAAAA-ATATACTAAAATAAAAC
* * *
32566475 AAAAAATATAGTTAAATAAAAT
1 AAAAAATATACTAAAATAAAAC
*
32566497 AATAAATATA
1 AAAAAATATA
32566507 ACATATTTAT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 22 0.81
23 5 0.19
ACGTcount: A:0.67, C:0.04, G:0.04, T:0.25
Consensus pattern (22 bp):
AAAAAATATACTAAAATAAAAC
Found at i:32566533 original size:2 final size:2
Alignment explanation
Indices: 32566522--32566580 Score: 61
Period size: 2 Copynumber: 30.0 Consensus size: 2
32566512 TTTATCCATG
* *
32566522 AT AT AT -T AT AT AT AT AT AT AT AT ACT AT AG CT AT AT -T ACT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT A-T AT
32566564 AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT
32566581 GCATACAAAG
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
1 3 0.06
2 41 0.85
3 4 0.08
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:32566825 original size:132 final size:131
Alignment explanation
Indices: 32566587--32566850 Score: 519
Period size: 132 Copynumber: 2.0 Consensus size: 131
32566577 ATATGCATAC
32566587 AAAGAAAAATAATATAAAGAAATTTCAAAGAAATAACAAAAGAGTTGTCGGAAGGTTAATAAACA
1 AAAGAAAAATAATATAAAGAAATTTCAAAGAAATAACAAAAGAGTTGTCGGAAGGTTAATAAACA
32566652 AATATTGAAATTTACGGGCACATCGTACCTCATCATTGCACCGTTAATGTCATGGCATGTAGACA
66 AATATTGAAATTTACGGGCACATCGTACCTCATCATTGCACCGTTAATGTCATGGCATGTAGACA
32566717 T
131 T
32566718 ANAAGAAAAATAATATAAAGAAATTTCAAAGAAATAACAAAAGAGTTGTCGGAAGGTTAATAAAC
1 A-AAGAAAAATAATATAAAGAAATTTCAAAGAAATAACAAAAGAGTTGTCGGAAGGTTAATAAAC
32566783 AAATATTGAAATTTACGGGCACATCGTACCTCATCATTGCACCGTTAATGTCATGGCATGTAGAC
65 AAATATTGAAATTTACGGGCACATCGTACCTCATCATTGCACCGTTAATGTCATGGCATGTAGAC
32566848 AT
130 AT
32566850 A
1 A
32566851 TTTTGTATAC
Statistics
Matches: 132, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
131 1 0.01
132 131 0.99
ACGTcount: A:0.44, C:0.14, G:0.17, T:0.25
Consensus pattern (131 bp):
AAAGAAAAATAATATAAAGAAATTTCAAAGAAATAACAAAAGAGTTGTCGGAAGGTTAATAAACA
AATATTGAAATTTACGGGCACATCGTACCTCATCATTGCACCGTTAATGTCATGGCATGTAGACA
T
Found at i:32567746 original size:42 final size:43
Alignment explanation
Indices: 32567666--32567749 Score: 143
Period size: 42 Copynumber: 2.0 Consensus size: 43
32567656 ACCTAAACAA
*
32567666 AGGAATAGTCTATTTTTATTTTATTCCATCACTTTCACGTTTT
1 AGGAATAGTCCATTTTTATTTTATTCCATCACTTTCACGTTTT
*
32567709 AGGAATAGTCCATTTTT-TTTTCTTCCATCACTTTCACGTTT
1 AGGAATAGTCCATTTTTATTTTATTCCATCACTTTCACGTTT
32567750 GAATATAGAT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
42 23 0.59
43 16 0.41
ACGTcount: A:0.21, C:0.19, G:0.10, T:0.50
Consensus pattern (43 bp):
AGGAATAGTCCATTTTTATTTTATTCCATCACTTTCACGTTTT
Found at i:32577185 original size:39 final size:39
Alignment explanation
Indices: 32577126--32577206 Score: 144
Period size: 39 Copynumber: 2.1 Consensus size: 39
32577116 GCCCTTGTTA
32577126 TGCATGTAAGCTTATATCTATTTAAAAGCTCATTGATTT
1 TGCATGTAAGCTTATATCTATTTAAAAGCTCATTGATTT
* *
32577165 TGCATGTAAGCTTTTGTCTATTTAAAAGCTCATTGATTT
1 TGCATGTAAGCTTATATCTATTTAAAAGCTCATTGATTT
32577204 TGC
1 TGC
32577207 CCTTCTCTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.27, C:0.14, G:0.15, T:0.44
Consensus pattern (39 bp):
TGCATGTAAGCTTATATCTATTTAAAAGCTCATTGATTT
Found at i:32580975 original size:28 final size:27
Alignment explanation
Indices: 32580931--32580993 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 27
32580921 AAGTAAATTT
32580931 TTAA-AAAATATAAAAA-TAATTAATAA
1 TTAATAAAATATAAAAATTAA-TAATAA
*
32580957 TTAATAAAATTATATAAATTAATAATAA
1 TTAATAAAA-TATAAAAATTAATAATAA
* *
32580985 ATCATAAAA
1 TTAATAAAA
32580994 AAATTTCAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
26 4 0.13
27 4 0.13
28 20 0.65
29 3 0.10
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (27 bp):
TTAATAAAATATAAAAATTAATAATAA
Found at i:32581711 original size:1 final size:1
Alignment explanation
Indices: 32581707--32581750 Score: 88
Period size: 1 Copynumber: 44.0 Consensus size: 1
32581697 TTGTTTTTAC
32581707 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
32581751 TATTTTTTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 43 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:32583724 original size:20 final size:21
Alignment explanation
Indices: 32583694--32583738 Score: 74
Period size: 20 Copynumber: 2.2 Consensus size: 21
32583684 AATATTTATT
32583694 TTTTTACTTTATATATTTTGA
1 TTTTTACTTTATATATTTTGA
*
32583715 TTTTTA-TTTATGTATTTTGA
1 TTTTTACTTTATATATTTTGA
32583735 TTTT
1 TTTT
32583739 GTCAAAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 17 0.74
21 6 0.26
ACGTcount: A:0.20, C:0.02, G:0.07, T:0.71
Consensus pattern (21 bp):
TTTTTACTTTATATATTTTGA
Found at i:32586454 original size:15 final size:15
Alignment explanation
Indices: 32586434--32586463 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
32586424 ATTTTTTTTC
*
32586434 AAAAAAATTCTCTCT
1 AAAAAAATACTCTCT
32586449 AAAAAAATACTCTCT
1 AAAAAAATACTCTCT
32586464 CTCTCCCTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (15 bp):
AAAAAAATACTCTCT
Found at i:32586609 original size:17 final size:17
Alignment explanation
Indices: 32586589--32586621 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
32586579 CATTATACTT
*
32586589 TTTTTCTTTTTATTTTG
1 TTTTTCATTTTATTTTG
32586606 TTTTTCATTTTATTTT
1 TTTTTCATTTTATTTT
32586622 TTATCATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.09, C:0.06, G:0.03, T:0.82
Consensus pattern (17 bp):
TTTTTCATTTTATTTTG
Found at i:32587139 original size:18 final size:18
Alignment explanation
Indices: 32587108--32587142 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
32587098 ATTTTGAACA
32587108 AAAAAATTAGTTATTAAT
1 AAAAAATTAGTTATTAAT
* *
32587126 AAAAAGTTATTTATTAA
1 AAAAAATTAGTTATTAA
32587143 ATACTTTTTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (18 bp):
AAAAAATTAGTTATTAAT
Found at i:32596343 original size:24 final size:24
Alignment explanation
Indices: 32596311--32596367 Score: 80
Period size: 24 Copynumber: 2.4 Consensus size: 24
32596301 AAATTGACTT
*
32596311 CTGCAGCTGTTGCAATA-GCAGCAG
1 CTGCGGCTGTTGCAA-AGGCAGCAG
*
32596335 CTGCGGCTGTTGCAAAGGCTGCAG
1 CTGCGGCTGTTGCAAAGGCAGCAG
32596359 CTGCGGCTG
1 CTGCGGCTG
32596368 CCAATGTTGC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 1 0.03
24 29 0.97
ACGTcount: A:0.18, C:0.26, G:0.35, T:0.21
Consensus pattern (24 bp):
CTGCGGCTGTTGCAAAGGCAGCAG
Found at i:32597329 original size:78 final size:78
Alignment explanation
Indices: 32597234--32597387 Score: 274
Period size: 78 Copynumber: 2.0 Consensus size: 78
32597224 ATAAATTTTC
32597234 TAAGTTCTAACGTGTATGTGTGCACTTGCATTTCA-TGGAAATATGTTGATATAGTGGTCAGTTT
1 TAAGTTCTAACGTGTATGTGTGCACTTGCATTTCACT-GAAATATGTTGATATAGTGGTCAGTTT
32597298 GAGAACTCTTGCTT
65 GAGAACTCTTGCTT
*
32597312 TAAGTTCTAATGTGTATGTGTGCACTTGCATTTCACTGAAATATGTTGATATAGTGGTCAGTTTG
1 TAAGTTCTAACGTGTATGTGTGCACTTGCATTTCACTGAAATATGTTGATATAGTGGTCAGTTTG
*
32597377 AGAACTTTTGC
66 AGAACTCTTGC
32597388 CTGCATTTTT
Statistics
Matches: 73, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
78 72 0.99
79 1 0.01
ACGTcount: A:0.25, C:0.12, G:0.23, T:0.40
Consensus pattern (78 bp):
TAAGTTCTAACGTGTATGTGTGCACTTGCATTTCACTGAAATATGTTGATATAGTGGTCAGTTTG
AGAACTCTTGCTT
Found at i:32598431 original size:45 final size:44
Alignment explanation
Indices: 32598367--32598547 Score: 281
Period size: 44 Copynumber: 4.1 Consensus size: 44
32598357 AAAAAGTACT
*
32598367 GCAGGATGAATCTGGATGCATATTTTAAACTCTTCACTAGCTGTA
1 GCAGGATGAATCTGTATGCATATTTTAAACTC-TCACTAGCTGTA
*
32598412 GCAGGATGAATCTGTATGCATATTTTAAACTCTCACTGGCTGTA
1 GCAGGATGAATCTGTATGCATATTTTAAACTCTCACTAGCTGTA
* * * *
32598456 CCAGAATGAATCTGTATGCATACTTTAAACTCTCGCTAGCTGTA
1 GCAGGATGAATCTGTATGCATATTTTAAACTCTCACTAGCTGTA
* *
32598500 GCAGGATGAATCTGTATGCGTATTTTAAACTCGCACTAGCTGTA
1 GCAGGATGAATCTGTATGCATATTTTAAACTCTCACTAGCTGTA
32598544 GCAG
1 GCAG
32598548 AAACGAAAGT
Statistics
Matches: 123, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
44 92 0.75
45 31 0.25
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.32
Consensus pattern (44 bp):
GCAGGATGAATCTGTATGCATATTTTAAACTCTCACTAGCTGTA
Found at i:32610444 original size:22 final size:20
Alignment explanation
Indices: 32610406--32610480 Score: 89
Period size: 21 Copynumber: 3.5 Consensus size: 20
32610396 ATTTTTAAAA
*
32610406 ATTACGTGACT-AGCTTTAAGGC
1 ATTACGTGACTGA-CTTT--GGT
32610428 ATTACGTGACTGACTTTGGAT
1 ATTACGTGACTGACTTTGG-T
32610449 ATTACGTGACTGACTTTGGGT
1 ATTACGTGACTGACTTT-GGT
32610470 ATTACGTGACT
1 ATTACGTGACT
32610481 AATTTTTAAT
Statistics
Matches: 49, Mismatches: 1, Indels: 7
0.86 0.02 0.12
Matches are distributed among these distances:
20 2 0.04
21 29 0.59
22 17 0.35
23 1 0.02
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.36
Consensus pattern (20 bp):
ATTACGTGACTGACTTTGGT
Found at i:32610454 original size:21 final size:21
Alignment explanation
Indices: 32610428--32610480 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
32610418 GCTTTAAGGC
32610428 ATTACGTGACTGACTTTGGAT
1 ATTACGTGACTGACTTTGGAT
*
32610449 ATTACGTGACTGACTTTGGGT
1 ATTACGTGACTGACTTTGGAT
32610470 ATTACGTGACT
1 ATTACGTGACT
32610481 AATTTTTAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.23, C:0.15, G:0.25, T:0.38
Consensus pattern (21 bp):
ATTACGTGACTGACTTTGGAT
Found at i:32610534 original size:73 final size:73
Alignment explanation
Indices: 32610453--32610653 Score: 224
Period size: 73 Copynumber: 2.7 Consensus size: 73
32610443 TTGGATATTA
* *
32610453 CGTGACTGACTTTGGGTATTACGTGACTAATTTTTAATAAGGCATTGCATGATTAGTTTCTGATA
1 CGTGACTGACTTTGGGCATTACGTGACTAATTTTTAATAAGGCATTGCATGACTAGTTTCTGATA
*
32610518 AGGCATTG
66 AAGCATTG
** * * * *
32610526 CGTGACTGACTTTGAACATTACGAGACTAATTTTTGATAAGGCATTACGTGACTAGTTTCTGATA
1 CGTGACTGACTTTGGGCATTACGTGACTAATTTTTAATAAGGCATTGCATGACTAGTTTCTGATA
32610591 AAGCATTG
66 AAGCATTG
* * * * * * * *
32610599 TGTGA-TTAGTTGATAGGCATTGCGTAACTAATTTCTAATAAGGCATTGCGTGACT
1 CGTGACTGACTT--TGGGCATTACGTGACTAATTTTTAATAAGGCATTGCATGACT
32610654 TAAGTATTGC
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
72 4 0.04
73 68 0.65
74 33 0.31
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.36
Consensus pattern (73 bp):
CGTGACTGACTTTGGGCATTACGTGACTAATTTTTAATAAGGCATTGCATGACTAGTTTCTGATA
AAGCATTG
Found at i:32610579 original size:26 final size:26
Alignment explanation
Indices: 32610474--32610653 Score: 126
Period size: 26 Copynumber: 7.3 Consensus size: 26
32610464 TTGGGTATTA
*
32610474 CGTGACTAATTTTTAATAAGGCATTG
1 CGTGACTAATTTTTGATAAGGCATTG
* * * *
32610500 CATGATTAGTTTCTGATAAGGCATTG
1 CGTGACTAATTTTTGATAAGGCATTG
* * *
32610526 CGTGACTGA-CTTTG--AA--CATTA
1 CGTGACTAATTTTTGATAAGGCATTG
* *
32610547 CGAGACTAATTTTTGATAAGGCATTA
1 CGTGACTAATTTTTGATAAGGCATTG
* * *
32610573 CGTGACTAGTTTCTGATAAAGCATTG
1 CGTGACTAATTTTTGATAAGGCATTG
* **
32610599 TGTGA-T--TAGTTGAT-AGGCATTG
1 CGTGACTAATTTTTGATAAGGCATTG
* * *
32610621 CGTAACTAATTTCTAATAAGGCATTG
1 CGTGACTAATTTTTGATAAGGCATTG
32610647 CGTGACT
1 CGTGACT
32610654 TAAGTATTGC
Statistics
Matches: 113, Mismatches: 32, Indels: 18
0.69 0.20 0.11
Matches are distributed among these distances:
21 11 0.10
22 14 0.12
23 8 0.07
24 2 0.02
25 8 0.07
26 70 0.62
ACGTcount: A:0.29, C:0.13, G:0.22, T:0.36
Consensus pattern (26 bp):
CGTGACTAATTTTTGATAAGGCATTG
Found at i:32610619 original size:48 final size:49
Alignment explanation
Indices: 32610559--32610651 Score: 125
Period size: 48 Copynumber: 1.9 Consensus size: 49
32610549 AGACTAATTT
* * * *
32610559 TTGATAAGGCATTACGTGACTAGTTTCTGATAAAGCATTGTGTGATTAG
1 TTGATAAGGCATTACGTAACTAATTTCTAATAAAGCATTGCGTGATTAG
* *
32610608 TTGAT-AGGCATTGCGTAACTAATTTCTAATAAGGCATTGCGTGA
1 TTGATAAGGCATTACGTAACTAATTTCTAATAAAGCATTGCGTGA
32610652 CTTAAGTATT
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
48 33 0.87
49 5 0.13
ACGTcount: A:0.29, C:0.12, G:0.24, T:0.35
Consensus pattern (49 bp):
TTGATAAGGCATTACGTAACTAATTTCTAATAAAGCATTGCGTGATTAG
Found at i:32610699 original size:21 final size:22
Alignment explanation
Indices: 32610665--32610721 Score: 71
Period size: 21 Copynumber: 2.6 Consensus size: 22
32610655 AAGTATTGCT
* *
32610665 TAAAAATCAGTCACGTAATACC
1 TAAAAACCAATCACGTAATACC
*
32610687 T-AAAACCAATCACGTAATACT
1 TAAAAACCAATCACGTAATACC
*
32610708 TAAAAACTAATCAC
1 TAAAAACCAATCAC
32610722 ACAGTGATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 18 0.60
22 12 0.40
ACGTcount: A:0.49, C:0.23, G:0.05, T:0.23
Consensus pattern (22 bp):
TAAAAACCAATCACGTAATACC
Found at i:32611406 original size:19 final size:20
Alignment explanation
Indices: 32611372--32611409 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
32611362 AGTCATGTCA
*
32611372 AAAATTAATCAAAAATAATT
1 AAAATTAATAAAAAATAATT
32611392 AAAATT-ATAAAAAATAAT
1 AAAATTAATAAAAAATAAT
32611410 ATTTTTGAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (20 bp):
AAAATTAATAAAAAATAATT
Found at i:32611420 original size:29 final size:29
Alignment explanation
Indices: 32611388--32611444 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 29
32611378 AATCAAAAAT
32611388 AATTAAAATTATAAAAAATAATATTTTTG
1 AATTAAAATTATAAAAAATAATATTTTTG
* * * * *
32611417 AATTGAACTTATGAGAAATATTATTTTT
1 AATTAAAATTATAAAAAATAATATTTTT
32611445 TTTAATTTTT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.47, C:0.02, G:0.07, T:0.44
Consensus pattern (29 bp):
AATTAAAATTATAAAAAATAATATTTTTG
Found at i:32613562 original size:23 final size:22
Alignment explanation
Indices: 32613506--32613579 Score: 73
Period size: 23 Copynumber: 3.3 Consensus size: 22
32613496 TTTTAATATT
32613506 AAATATTATTTAA-TTATAATAA
1 AAATATTA-TTAATTTATAATAA
*
32613528 AAGGT-TTAATT-ATCTTATAATACA
1 AA-ATATT-ATTAAT-TTATAATA-A
32613552 AAATATTATTAATTTATAATAA
1 AAATATTATTAATTTATAATAA
32613574 AAATAT
1 AAATAT
32613580 ATTTGTATTT
Statistics
Matches: 43, Mismatches: 2, Indels: 14
0.73 0.03 0.24
Matches are distributed among these distances:
21 1 0.02
22 13 0.30
23 22 0.51
24 7 0.16
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (22 bp):
AAATATTATTAATTTATAATAA
Found at i:32613589 original size:23 final size:22
Alignment explanation
Indices: 32613506--32613619 Score: 67
Period size: 23 Copynumber: 5.1 Consensus size: 22
32613496 TTTTAATATT
32613506 AAATATTATTTAA-TTATAATAA
1 AAATA-TATTTAATTTATAATAA
* * *
32613528 AAGGTTTAATT-ATCTTATAATACA
1 AA-ATATATTTAAT-TTATAATA-A
32613552 AAATAT-TATTAATTTATAATAA
1 AAATATAT-TTAATTTATAATAA
* * *
32613574 AAATATATTTGTATTT-TGATGA
1 AAATATATTT-AATTTATAATAA
*
32613596 AAATATTATTTAA-TTATAGTAA
1 AAATA-TATTTAATTTATAATAA
32613618 AA
1 AA
32613620 GTTATTTTGA
Statistics
Matches: 69, Mismatches: 13, Indels: 20
0.68 0.13 0.20
Matches are distributed among these distances:
21 3 0.04
22 30 0.43
23 31 0.45
24 5 0.07
ACGTcount: A:0.48, C:0.02, G:0.05, T:0.45
Consensus pattern (22 bp):
AAATATATTTAATTTATAATAA
Found at i:32621570 original size:42 final size:42
Alignment explanation
Indices: 32621482--32621563 Score: 137
Period size: 42 Copynumber: 2.0 Consensus size: 42
32621472 TTAATCTCTC
* * *
32621482 AAGTTTTGGTATCATTTAGTTTTTATCATCATCTAAAAGTCT
1 AAGTTTTGATATCATTTAATTTCTATCATCATCTAAAAGTCT
32621524 AAGTTTTGATATCATTTAATTTCTATCATCATCTAAAAGT
1 AAGTTTTGATATCATTTAATTTCTATCATCATCTAAAAGT
32621564 TGAAGTTCCA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.32, C:0.12, G:0.10, T:0.46
Consensus pattern (42 bp):
AAGTTTTGATATCATTTAATTTCTATCATCATCTAAAAGTCT
Found at i:32622269 original size:27 final size:27
Alignment explanation
Indices: 32622239--32622329 Score: 94
Period size: 27 Copynumber: 3.4 Consensus size: 27
32622229 TCTATCAAGG
32622239 GTGAATGGATACTTTTACCCACAAAGA
1 GTGAATGGATACTTTTACCCACAAAGA
*
32622266 GTGAATGGATACTCTTACCCACCAAA-A
1 GTGAATGGATACTTTTACCCA-CAAAGA
* * * * * *
32622293 GTGGATGAATACCTTTACCAACCAGGA
1 GTGAATGGATACTTTTACCCACAAAGA
*
32622320 GTGGATGGAT
1 GTGAATGGAT
32622330 TTCTTATCTT
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
26 2 0.04
27 47 0.89
28 4 0.08
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (27 bp):
GTGAATGGATACTTTTACCCACAAAGA
Found at i:32622341 original size:32 final size:31
Alignment explanation
Indices: 32622305--32622422 Score: 78
Period size: 32 Copynumber: 3.7 Consensus size: 31
32622295 GGATGAATAC
*
32622305 CTTTACCAACCAGGAGTGGATGGATTTCTTAT
1 CTTTACC-ACCAAGAGTGGATGGATTTCTTAT
** *
32622337 CTTTAGCCA-CTGGAAGTGGATGGATATT-TTAC
1 CTTTA-CCACCAAG-AGTGGATGGAT-TTCTTAT
* * * **
32622369 CGTTACCCACTAAGAGTTGATGGATACCTTAT
1 CTTTA-CCACCAAGAGTGGATGGATTTCTTAT
*
32622401 CTTTACCTATCAAGAGTGGATG
1 CTTTACC-ACCAAGAGTGGATG
32622423 TATACTTTTA
Statistics
Matches: 65, Mismatches: 15, Indels: 12
0.71 0.16 0.13
Matches are distributed among these distances:
31 5 0.08
32 55 0.85
33 5 0.08
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (31 bp):
CTTTACCACCAAGAGTGGATGGATTTCTTAT
Found at i:32646472 original size:3 final size:3
Alignment explanation
Indices: 32646464--32646496 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
32646454 TACTTAGTAA
32646464 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
32646497 TTTTGAGGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:32651940 original size:16 final size:16
Alignment explanation
Indices: 32651919--32651949 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32651909 TCTCTCTCTC
*
32651919 CTCTCTTCAAAATTTT
1 CTCTCTGCAAAATTTT
32651935 CTCTCTGCAAAATTT
1 CTCTCTGCAAAATTT
32651950 CACCTAAATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.26, G:0.03, T:0.45
Consensus pattern (16 bp):
CTCTCTGCAAAATTTT
Found at i:32660210 original size:15 final size:15
Alignment explanation
Indices: 32660192--32660309 Score: 66
Period size: 15 Copynumber: 7.9 Consensus size: 15
32660182 AAAATTTAAA
32660192 ATATTAATATTTTAT
1 ATATTAATATTTTAT
** *
32660207 ATA-TAAT-TTAAAC
1 ATATTAATATTTTAT
*
32660220 ATTATTAATA-TTAAT
1 A-TATTAATATTTTAT
* * *
32660235 ATGATTAAAATATTAA
1 AT-ATTAATATTTTAT
*
32660251 ATATTAATATTTTAA
1 ATATTAATATTTTAT
*
32660266 ACTATTAATGTTTTAT
1 A-TATTAATATTTTAT
*
32660282 TTATTAA-ATTATTAAT
1 ATATTAATATT-TT-AT
32660298 ATATTAA-ATTTT
1 ATATTAATATTTT
32660310 TANNNNNNNN
Statistics
Matches: 79, Mismatches: 16, Indels: 16
0.71 0.14 0.14
Matches are distributed among these distances:
13 4 0.05
14 9 0.11
15 39 0.49
16 27 0.34
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (15 bp):
ATATTAATATTTTAT
Found at i:32661669 original size:23 final size:23
Alignment explanation
Indices: 32661619--32661671 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
32661609 AGTTCCAGTT
* * *
32661619 AGAGAGAGAATGAGAGAGGGAGA
1 AGAGAGAGAAAGAGAAAGGGAAA
32661642 AGAGAGAGAAAGA-AAAGGGAAA
1 AGAGAGAGAAAGAGAAAGGGAAA
32661664 ATGAGAGA
1 A-GAGAGA
32661672 AAAAAAGTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
22 8 0.31
23 18 0.69
ACGTcount: A:0.55, C:0.00, G:0.42, T:0.04
Consensus pattern (23 bp):
AGAGAGAGAAAGAGAAAGGGAAA
Found at i:32693182 original size:6 final size:7
Alignment explanation
Indices: 32693165--32693193 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
32693155 TCTGTTCAAT
32693165 TTTTTAA
1 TTTTTAA
32693172 TTTTTAA
1 TTTTTAA
32693179 TTTTTAA
1 TTTTTAA
32693186 TTTTTAA
1 TTTTTAA
32693193 T
1 T
32693194 CTTGTAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (7 bp):
TTTTTAA
Found at i:32695550 original size:58 final size:58
Alignment explanation
Indices: 32695475--32695629 Score: 186
Period size: 58 Copynumber: 2.7 Consensus size: 58
32695465 GAAACCTTTA
* **
32695475 AAATGAAGTTTCCAAATCGTTAGTTCAAAATTAAGTCAGGACCCTTAAAAAAAACTTG
1 AAATGAAGTTTCCAAATCGTTAGTTCAAAATCAAGTCAAAACCCTTAAAAAAAACTTG
* * * * **
32695533 AGATGAAGTTTCTAAATCGTTTGTTCAAGATCAAGTCAAAACCCTTAAAGTAAACTTG
1 AAATGAAGTTTCCAAATCGTTAGTTCAAAATCAAGTCAAAACCCTTAAAAAAAACTTG
* * *
32695591 AAACGAAGTATCCAAATCGTTCGTT-AAAGATCAAGTCAA
1 AAATGAAGTTTCCAAATCGTTAGTTCAAA-ATCAAGTCAA
32695630 GACAAATTTT
Statistics
Matches: 81, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
57 2 0.02
58 79 0.98
ACGTcount: A:0.41, C:0.16, G:0.15, T:0.28
Consensus pattern (58 bp):
AAATGAAGTTTCCAAATCGTTAGTTCAAAATCAAGTCAAAACCCTTAAAAAAAACTTG
Found at i:32695801 original size:47 final size:47
Alignment explanation
Indices: 32695710--32695801 Score: 123
Period size: 47 Copynumber: 2.0 Consensus size: 47
32695700 ATCTAAATCC
* * **
32695710 TTCATTTAAGATCAAGTTAAGATTCTTGAAGCGAAGTCTTCAAATTG
1 TTCATTTAAGATCAAGTTAAGATCCTTAAAGCGAAAACTTCAAATTG
*
32695757 TTCATTTAAGATCAAGTTGAGATCCTTAAAGC-AAAACTTCCAAAT
1 TTCATTTAAGATCAAGTTAAGATCCTTAAAGCGAAAACTT-CAAAT
32695802 AATTCAAACG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
46 5 0.13
47 34 0.87
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34
Consensus pattern (47 bp):
TTCATTTAAGATCAAGTTAAGATCCTTAAAGCGAAAACTTCAAATTG
Found at i:32695824 original size:51 final size:51
Alignment explanation
Indices: 32695764--32696118 Score: 287
Period size: 51 Copynumber: 6.8 Consensus size: 51
32695754 TTGTTCATTT
* * ** * **
32695764 AAGATCAAGTTGAGATCCTTAAAGCAAAACTTCCAAATAATTCAAACGTTC
1 AAGATCAAGTTAAGACCCTTAAAGCAAAGTTTCCAAATCATTCATTCGTTC
* * * * *
32695815 AAGATCAAGTCAAGACCCTTAAAACAAAGTTTTCAAATCGTTCATTTGTTC
1 AAGATCAAGTTAAGACCCTTAAAGCAAAGTTTCCAAATCATTCATTCGTTC
* * * * ** *
32695866 AAAATCAAGTTATAAGACCCTTGAAGCGAAAAAGTCTCTAAATCATTTGTTCATTC
1 AAGATCAAG-T-TAAGACCCTTAAAGC---AAAGTTTCCAAATCATTCATTCGTTC
* * * **
32695922 AAGATCAAGTTAAGACCCTTGAAGTAAAGTTTCCAAATAATTCAAACGTTC
1 AAGATCAAGTTAAGACCCTTAAAGCAAAGTTTCCAAATCATTCATTCGTTC
* * *
32695973 AAGATCAAGTCAAGACCCTTAAAGCAAAGTTTTCAAATCGTTCATTCGTTC
1 AAGATCAAGTTAAGACCCTTAAAGCAAAGTTTCCAAATCATTCATTCGTTC
* * * ** *
32696024 AAGATCAAGTTATAAGACCCTTGAAGCGAAAAAGTCTCTAAATCATTTGTTCATTC
1 AAGATCAAG-T-TAAGACCCTTAAAGC---AAAGTTTCCAAATCATTCATTCGTTC
* * * *
32696080 AAGATCAAGTTAAGACCCTTGAAGTAAAGTCTCTAAATC
1 AAGATCAAGTTAAGACCCTTAAAGCAAAGTTTCCAAATC
32696119 GTTCGTTCAA
Statistics
Matches: 242, Mismatches: 52, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
51 131 0.54
52 2 0.01
53 25 0.10
54 28 0.12
55 2 0.01
56 54 0.22
ACGTcount: A:0.39, C:0.19, G:0.13, T:0.29
Consensus pattern (51 bp):
AAGATCAAGTTAAGACCCTTAAAGCAAAGTTTCCAAATCATTCATTCGTTC
Found at i:32695973 original size:107 final size:102
Alignment explanation
Indices: 32695780--32696050 Score: 240
Period size: 107 Copynumber: 2.6 Consensus size: 102
32695770 AAGTTGAGAT
* * ** * * * *
32695780 CCTTAAAGCAAAACTTC-CAAATAATTCAAACGTTCAAGATCAAGTCAAGACCCTTAAAACAAAG
1 CCTTAAAGC-AAAGTTCTCAAATCATTCATTCATTCAAGATCAAGTTAAGACCCTTGAAGCAAAG
* ** *** *
32695844 TTTTCAAATCGTTCATTTGTTCAAAATCAAGTTATAAGAC
65 TTTCCAAATAATTCAAACGTTCAAAATCAAG-T-CAAGAC
* ** *
32695884 CCTTGAAGCGAAAAAG-TCTCTAAATCATTTGTTCATTCAAGATCAAGTTAAGACCCTTGAAGTA
1 CCTTAAAGC---AAAGTTCTC-AAATCATTCATTCATTCAAGATCAAGTTAAGACCCTTGAAGCA
*
32695948 AAGTTTCCAAATAATTCAAACGTTCAAGATCAAGTCAAGAC
62 AAGTTTCCAAATAATTCAAACGTTCAAAATCAAGTCAAGAC
* * *
32695989 CCTTAAAGCAAAGTTTTCAAATCGTTCATTCGTTCAAGATCAAGTTATAAGACCCTTGAAGC
1 CCTTAAAGCAAAGTTCTCAAATCATTCATTCATTCAAGATCAAG-T-TAAGACCCTTGAAGC
32696051 GAAAAAGTCT
Statistics
Matches: 133, Mismatches: 27, Indels: 14
0.76 0.16 0.08
Matches are distributed among these distances:
102 26 0.20
103 4 0.03
104 22 0.17
105 15 0.11
106 6 0.05
107 60 0.45
ACGTcount: A:0.39, C:0.20, G:0.13, T:0.28
Consensus pattern (102 bp):
CCTTAAAGCAAAGTTCTCAAATCATTCATTCATTCAAGATCAAGTTAAGACCCTTGAAGCAAAGT
TTCCAAATAATTCAAACGTTCAAAATCAAGTCAAGAC
Found at i:32696058 original size:107 final size:102
Alignment explanation
Indices: 32695896--32696122 Score: 240
Period size: 107 Copynumber: 2.2 Consensus size: 102
32695886 TTGAAGCGAA
* ** * * *
32695896 AAAGTCTCTAAATCATTTGTTCATTCAAGATCAAGTTAAGACCCTTGAAGTAAAGTTTCCAAATA
1 AAAGTCTCTAAATCGTTCATTCGTTCAAGATCAAGTTAAGACCCTTGAAGAAAAGTCTCCAAATA
*
32695961 ATTCAAACGTTCAAGATCAAGTCAAGACCCTTAAAGC
66 ATTCAAACATTCAAGATCAAGTCAAGACCCTTAAAGC
*
32695998 AAAGT-TTTCAAATCGTTCATTCGTTCAAGATCAAGTTATAAGACCCTTGAAGCGAAAAAGTCTC
1 AAAGTCTCT-AAATCGTTCATTCGTTCAAGATCAAG-T-TAAGACCCTTGAA--G-AAAAGTCTC
* * **** * * *
32696062 TAAATCATTTGTTCATTCAAGATCAAGTTAAGACCCTTGAAGT
60 CAAATAATTCAAACATTCAAGATCAAGTCAAGACCCTTAAAGC
32696105 AAAGTCTCTAAATCGTTC
1 AAAGTCTCTAAATCGTTC
32696123 GTTCAATATC
Statistics
Matches: 100, Mismatches: 18, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
101 2 0.02
102 27 0.27
103 1 0.01
104 13 0.13
106 1 0.01
107 54 0.54
108 2 0.02
ACGTcount: A:0.37, C:0.19, G:0.14, T:0.30
Consensus pattern (102 bp):
AAAGTCTCTAAATCGTTCATTCGTTCAAGATCAAGTTAAGACCCTTGAAGAAAAGTCTCCAAATA
ATTCAAACATTCAAGATCAAGTCAAGACCCTTAAAGC
Found at i:32696100 original size:158 final size:158
Alignment explanation
Indices: 32695754--32696109 Score: 622
Period size: 158 Copynumber: 2.3 Consensus size: 158
32695744 AGTCTTCAAA
* * * * * **
32695754 TTGTTCATTTAAGATCAAGTTGAGATCCTTAAAGCAAAACTTCCAAATAATTCAAACGTTCAAGA
1 TTGTTCATTCAAGATCAAGTTAAGACCCTTGAAGTAAAGTTTCCAAATAATTCAAACGTTCAAGA
*
32695819 TCAAGTCAAGACCCTTAAAACAAAGTTTTCAAATCGTTCATTTGTTCAAAATCAAGTTATAAGAC
66 TCAAGTCAAGACCCTTAAAACAAAGTTTTCAAATCGTTCATTCGTTCAAAATCAAGTTATAAGAC
32695884 CCTTGAAGCGAAAAAGTCTCTAAATCAT
131 CCTTGAAGCGAAAAAGTCTCTAAATCAT
32695912 TTGTTCATTCAAGATCAAGTTAAGACCCTTGAAGTAAAGTTTCCAAATAATTCAAACGTTCAAGA
1 TTGTTCATTCAAGATCAAGTTAAGACCCTTGAAGTAAAGTTTCCAAATAATTCAAACGTTCAAGA
* *
32695977 TCAAGTCAAGACCCTTAAAGCAAAGTTTTCAAATCGTTCATTCGTTCAAGATCAAGTTATAAGAC
66 TCAAGTCAAGACCCTTAAAACAAAGTTTTCAAATCGTTCATTCGTTCAAAATCAAGTTATAAGAC
32696042 CCTTGAAGCGAAAAAGTCTCTAAATCAT
131 CCTTGAAGCGAAAAAGTCTCTAAATCAT
32696070 TTGTTCATTCAAGATCAAGTTAAGACCCTTGAAGTAAAGT
1 TTGTTCATTCAAGATCAAGTTAAGACCCTTGAAGTAAAGT
32696110 CTCTAAATCG
Statistics
Matches: 188, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
158 188 1.00
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.30
Consensus pattern (158 bp):
TTGTTCATTCAAGATCAAGTTAAGACCCTTGAAGTAAAGTTTCCAAATAATTCAAACGTTCAAGA
TCAAGTCAAGACCCTTAAAACAAAGTTTTCAAATCGTTCATTCGTTCAAAATCAAGTTATAAGAC
CCTTGAAGCGAAAAAGTCTCTAAATCAT
Found at i:32696127 original size:51 final size:51
Alignment explanation
Indices: 32695710--32696140 Score: 259
Period size: 51 Copynumber: 8.3 Consensus size: 51
32695700 ATCTAAATCC
* ** ** * *
32695710 TTCATTTAAGATCAAGTTAAGATTCTTGAAGCGAAGTCT-TCAA--ATT-G
1 TTCATTCAAGATCAAGTTAAGACCCTTGAAGAAAAGTCTCTAAATCATTCA
* * * * * * *
32695757 TTCATTTAAGATCAAGTTGAGATCCTTAAAGCAAAACT-TCCAAATAATTCA
1 TTCATTCAAGATCAAGTTAAGACCCTTGAAG-AAAAGTCTCTAAATCATTCA
** * * * * *
32695808 AACGTTCAAGATCAAGTCAAGACCCTT-AAAACAAAGT-TTTCAAATCGTTCA
1 TTCATTCAAGATCAAGTTAAGACCCTTGAAGA-AAAGTCTCT-AAATCATTCA
** * **
32695859 TTTGTTCAAAATCAAGTTATAAGACCCTTGAAGCGAAAAAGTCTCTAAATCATTTG
1 TTCATTCAAGATCAAG-T-TAAGACCCTTGAA--G-AAAAGTCTCTAAATCATTCA
* * * *
32695915 TTCATTCAAGATCAAGTTAAGACCCTTGAAGTAAAGTTTCCAAATAATTCA
1 TTCATTCAAGATCAAGTTAAGACCCTTGAAGAAAAGTCTCTAAATCATTCA
** * * * * * *
32695966 AACGTTCAAGATCAAGTCAAGACCCTTAAAGCAAAGT-TTTCAAATCGTTCA
1 TTCATTCAAGATCAAGTTAAGACCCTTGAAGAAAAGTCTCT-AAATCATTCA
* **
32696017 TTCGTTCAAGATCAAGTTATAAGACCCTTGAAGCGAAAAAGTCTCTAAATCATTTG
1 TTCATTCAAGATCAAG-T-TAAGACCCTTGAA--G-AAAAGTCTCTAAATCATTCA
* * *
32696073 TTCATTCAAGATCAAGTTAAGACCCTTGAAGTAAAGTCTCTAAATCGTTCG
1 TTCATTCAAGATCAAGTTAAGACCCTTGAAGAAAAGTCTCTAAATCATTCA
32696124 TTCAATATCAA-ATCAAG
1 TTC-AT-TCAAGATCAAG
32696141 AATCTTGAAG
Statistics
Matches: 297, Mismatches: 64, Indels: 41
0.74 0.16 0.10
Matches are distributed among these distances:
47 29 0.10
48 5 0.02
49 1 0.00
50 11 0.04
51 127 0.43
52 12 0.04
53 24 0.08
54 28 0.09
55 3 0.01
56 52 0.18
57 5 0.02
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.30
Consensus pattern (51 bp):
TTCATTCAAGATCAAGTTAAGACCCTTGAAGAAAAGTCTCTAAATCATTCA
Found at i:32696174 original size:158 final size:154
Alignment explanation
Indices: 32695754--32696195 Score: 530
Period size: 158 Copynumber: 2.8 Consensus size: 154
32695744 AGTCTTCAAA
* * * * * *
32695754 TTGTTCATTTAAGATCAAGTTGAGATCCTTAAAGCAAA-ACTTCCAAATAATTCAAACGTTCAAG
1 TTGTTCATTCAAGATCAAGTTAAGACCCTTGAAGTAAAGTC-TCCAAATAATT---ACGTTCAAG
* * * *
32695818 ATCAAGTCAAGACCCTTAAAACAAAGTTTTCAAATCGTTCATTTGTTCAAAATCAAGTTATAAGA
62 ATCAAATCAAGAACCTTAAAGCAAAATTTTCAAATCGTTCA-TTGTTCAAAATCAAGTTATAAGA
32695883 CCCTTGAAGCGAAAAAGTCTCTAAATCAT
126 CCCTTGAAGCGAAAAAGTCTCTAAATCAT
*
32695912 TTGTTCATTCAAGATCAAGTTAAGACCCTTGAAGTAAAGTTTCCAAATAATTCAAACGTTCAAGA
1 TTGTTCATTCAAGATCAAGTTAAGACCCTTGAAGTAAAGTCTCCAAATAATT---ACGTTCAAGA
* * * *
32695977 TCAAGTCAAGACCCTTAAAGCAAAGTTTTCAAATCGTTCATTCGTTCAAGATCAAGTTATAAGAC
63 TCAAATCAAGAACCTTAAAGCAAAATTTTCAAATCGTTCATT-GTTCAAAATCAAGTTATAAGAC
32696042 CCTTGAAGCGAAAAAGTCTCTAAATCAT
127 CCTTGAAGCGAAAAAGTCTCTAAATCAT
* ** *
32696070 TTGTTCATTCAAGATCAAGTTAAGACCCTTGAAGTAAAGTCTCTAAATCGTT-CGTTCAATATCA
1 TTGTTCATTCAAGATCAAGTTAAGACCCTTGAAGTAAAGTCTCCAAATAATTACGTTCAAGATCA
* * * ** * *
32696134 AATCAAGAATCTTGAAG-AAAATTTTCCAAATTGTTTGTTCATTTAAAATCAAGTTATAAGAC
66 AATCAAGAACCTTAAAGCAAAATTTT-CAAATCGTTCATT-GTTCAAAATCAAGTTATAAGAC
32696196 TCAAGATCAA
Statistics
Matches: 256, Mismatches: 25, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
153 7 0.03
154 54 0.21
157 2 0.01
158 193 0.75
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.31
Consensus pattern (154 bp):
TTGTTCATTCAAGATCAAGTTAAGACCCTTGAAGTAAAGTCTCCAAATAATTACGTTCAAGATCA
AATCAAGAACCTTAAAGCAAAATTTTCAAATCGTTCATTGTTCAAAATCAAGTTATAAGACCCTT
GAAGCGAAAAAGTCTCTAAATCAT
Found at i:32699381 original size:7 final size:7
Alignment explanation
Indices: 32699369--32699398 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
32699359 AACTGAGGAG
32699369 GTAGCTA
1 GTAGCTA
32699376 GTAGCTA
1 GTAGCTA
*
32699383 GTAGCCA
1 GTAGCTA
32699390 GTAGCTA
1 GTAGCTA
32699397 GT
1 GT
32699399 GTATACATCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.27
Consensus pattern (7 bp):
GTAGCTA
Found at i:32702290 original size:5 final size:5
Alignment explanation
Indices: 32702280--32702304 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
32702270 AGAGTTAGTA
32702280 CTTTT CTTTT CTTTT CTTTT CTTTT
1 CTTTT CTTTT CTTTT CTTTT CTTTT
32702305 ATGTTTTCAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
CTTTT
Found at i:32705379 original size:50 final size:50
Alignment explanation
Indices: 32705316--32705415 Score: 164
Period size: 50 Copynumber: 2.0 Consensus size: 50
32705306 AAAAAGGTTT
* * *
32705316 TTGAATCTTTCCTTTTGTTGACAGGGTGTCTTTTCGAAATTTGAGTTGCA
1 TTGAATCTGTCCTTCTGTTGACAGGGTATCTTTTCGAAATTTGAGTTGCA
*
32705366 TTGAATCTGTCCTTCTGTTGACAGGGTATCTTTTGGAAATTTGAGTTGCA
1 TTGAATCTGTCCTTCTGTTGACAGGGTATCTTTTCGAAATTTGAGTTGCA
32705416 CCGTGGAGGG
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.19, C:0.14, G:0.23, T:0.44
Consensus pattern (50 bp):
TTGAATCTGTCCTTCTGTTGACAGGGTATCTTTTCGAAATTTGAGTTGCA
Found at i:32735999 original size:2 final size:2
Alignment explanation
Indices: 32735992--32736018 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
32735982 TATTAGTATG
32735992 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
32736019 TAATTCTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:32749607 original size:14 final size:13
Alignment explanation
Indices: 32749576--32749607 Score: 55
Period size: 13 Copynumber: 2.4 Consensus size: 13
32749566 GAACAAATTT
32749576 TTAAAAAAAAAGC
1 TTAAAAAAAAAGC
32749589 TTAAAAAAAAAGC
1 TTAAAAAAAAAGC
32749602 TCTAAA
1 T-TAAA
32749608 GAGGAGCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 14 0.78
14 4 0.22
ACGTcount: A:0.66, C:0.09, G:0.06, T:0.19
Consensus pattern (13 bp):
TTAAAAAAAAAGC
Found at i:32750158 original size:28 final size:28
Alignment explanation
Indices: 32750127--32750188 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
32750117 TTAAATAATA
*
32750127 AAATATATAAAATAATT-AAATTTTATTT
1 AAATATATAAAATAATTCAAAATTT-TTT
* *
32750155 AAATTTTTAAAATAATTCAAAATTTTTT
1 AAATATATAAAATAATTCAAAATTTTTT
32750183 AAATAT
1 AAATAT
32750189 TATATCTTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 23 0.79
29 6 0.21
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (28 bp):
AAATATATAAAATAATTCAAAATTTTTT
Found at i:32750857 original size:16 final size:14
Alignment explanation
Indices: 32750823--32750874 Score: 50
Period size: 14 Copynumber: 3.5 Consensus size: 14
32750813 TCAAATCAGT
*
32750823 TTTATTCTTTATTTA
1 TTTATT-TTAATTTA
*
32750838 TTTAATTTTCAATTTT
1 TTT-ATTTT-AATTTA
*
32750854 TTTATTTTAATTAA
1 TTTATTTTAATTTA
32750868 TTTATTT
1 TTTATTT
32750875 AAATGTATAA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
14 11 0.35
15 10 0.32
16 10 0.32
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (14 bp):
TTTATTTTAATTTA
Found at i:32766853 original size:2 final size:2
Alignment explanation
Indices: 32766798--32766833 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
32766788 CTCCTCTCCA
*
32766798 TC TC TC TC TC TC TC TC TC TC TC TC TC -C CC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
32766834 AGTCCCTATC
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (2 bp):
TC
Found at i:32768531 original size:17 final size:17
Alignment explanation
Indices: 32768488--32768534 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
32768478 TAATTATCAA
32768488 ATATATA-AATA-ATGT
1 ATATATATAATATATGT
*
32768503 ATAGAT-TAAATATATGT
1 ATATATAT-AATATATGT
32768520 ATATATATAATATAT
1 ATATATATAATATAT
32768535 TACTTTATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
15 5 0.19
16 4 0.15
17 16 0.62
18 1 0.04
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (17 bp):
ATATATATAATATATGT
Found at i:32790009 original size:30 final size:29
Alignment explanation
Indices: 32789974--32790031 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
32789964 TAAATAAATC
*
32789974 TTTATTTT-TTATTACATTAAATTAATTTTA
1 TTTATTTTGTT-TTAAATTAAA-TAATTTTA
32790004 TTTATTTTGTTTTAAATTAAATAATTTT
1 TTTATTTTGTTTTAAATTAAATAATTTT
32790032 TTAATTAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 7 0.27
30 17 0.65
31 2 0.08
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.64
Consensus pattern (29 bp):
TTTATTTTGTTTTAAATTAAATAATTTTA
Found at i:32790044 original size:15 final size:16
Alignment explanation
Indices: 32790013--32790053 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
32790003 ATTTATTTTG
*
32790013 TTTTAAATTAAATAAT
1 TTTTTAATTAAATAAT
32790029 TTTTTAATTAAA-AAT
1 TTTTTAATTAAATAAT
*
32790044 TATTTAATTA
1 TTTTTAATTA
32790054 TCATTAATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 12 0.52
16 11 0.48
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
TTTTTAATTAAATAAT
Found at i:32790081 original size:23 final size:25
Alignment explanation
Indices: 32790032--32790081 Score: 77
Period size: 23 Copynumber: 2.1 Consensus size: 25
32790022 AAATAATTTT
32790032 TTAATTAAAAATTATTTAATTATCA
1 TTAATTAAAAATTATTTAATTATCA
*
32790057 TTAATTAAAAA-TA-TTATTTATCA
1 TTAATTAAAAATTATTTAATTATCA
32790080 TT
1 TT
32790082 TTATATACAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 11 0.46
24 2 0.08
25 11 0.46
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (25 bp):
TTAATTAAAAATTATTTAATTATCA
Found at i:32799095 original size:29 final size:31
Alignment explanation
Indices: 32799050--32799109 Score: 79
Period size: 29 Copynumber: 2.0 Consensus size: 31
32799040 TAAAGTATAT
32799050 TTAAAAATATTAAAAT-ATATA-ATAATTTA
1 TTAAAAATATTAAAATAATATATATAATTTA
** *
32799079 TTAAAAATATTTTAATAATATATTTAATTTA
1 TTAAAAATATTAAAATAATATATATAATTTA
32799110 AATGGATGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 14 0.54
30 5 0.19
31 7 0.27
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (31 bp):
TTAAAAATATTAAAATAATATATATAATTTA
Found at i:32799097 original size:22 final size:20
Alignment explanation
Indices: 32799056--32799102 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 20
32799046 ATATTTAAAA
32799056 ATATTAAAATATATAATAAT
1 ATATTAAAATATATAATAAT
* *
32799076 TTATTAAAAATATTTTAATAAT
1 ATATT-AAAATA-TATAATAAT
32799098 ATATT
1 ATATT
32799103 TAATTTAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 4 0.18
21 6 0.27
22 12 0.55
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
ATATTAAAATATATAATAAT
Found at i:32799759 original size:12 final size:12
Alignment explanation
Indices: 32799742--32799803 Score: 53
Period size: 12 Copynumber: 5.3 Consensus size: 12
32799732 TTAAATCTAT
32799742 AAAAATATTTTA
1 AAAAATATTTTA
32799754 AAAAATA----A
1 AAAAATATTTTA
32799762 AAAAATATTATT-
1 AAAAATATT-TTA
32799774 AAAAATATTTTTA
1 AAAAATA-TTTTA
*
32799787 ATAACATATTTTA
1 A-AAAATATTTTA
32799800 AAAA
1 AAAA
32799804 TATGCTGTCT
Statistics
Matches: 40, Mismatches: 2, Indels: 16
0.69 0.03 0.28
Matches are distributed among these distances:
8 8 0.20
12 18 0.45
13 9 0.22
14 5 0.12
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (12 bp):
AAAAATATTTTA
Found at i:32800655 original size:20 final size:20
Alignment explanation
Indices: 32800630--32800719 Score: 64
Period size: 20 Copynumber: 4.7 Consensus size: 20
32800620 ATTTAACACG
32800630 ATTAAATAAAAATATTTATA
1 ATTAAATAAAAATATTTATA
*
32800650 ATTAAAT-ATAAT-TTTATTA
1 ATTAAATAAAAATATTTA-TA
* ** *
32800669 TTTAAATTTAAA-ATCTATA
1 ATTAAATAAAAATATTTATA
*
32800688 ATT--ATAAAAATAATTATA
1 ATTAAATAAAAATATTTATA
* *
32800706 ATAAAACAAAAATA
1 ATTAAATAAAAATA
32800720 ATAATAACAT
Statistics
Matches: 52, Mismatches: 12, Indels: 12
0.68 0.16 0.16
Matches are distributed among these distances:
17 5 0.10
18 11 0.21
19 16 0.31
20 20 0.38
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (20 bp):
ATTAAATAAAAATATTTATA
Found at i:32801173 original size:45 final size:45
Alignment explanation
Indices: 32801085--32801173 Score: 106
Period size: 45 Copynumber: 2.0 Consensus size: 45
32801075 CACTCCATGA
* * *
32801085 TTAGGTTGTTACACGCCATGTGCAAAAACATGTGACACACTATGG
1 TTAGGTTGTTACACGCCATATACAAAAACATATGACACACTATGG
* * * * *
32801130 TTAGGTTGTTACACGTCATATATAGAAACATATTACACGCTATG
1 TTAGGTTGTTACACGCCATATACAAAAACATATGACACACTATG
32801174 TACAGAAACG
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (45 bp):
TTAGGTTGTTACACGCCATATACAAAAACATATGACACACTATGG
Found at i:32801191 original size:24 final size:24
Alignment explanation
Indices: 32801171--32801245 Score: 123
Period size: 24 Copynumber: 3.1 Consensus size: 24
32801161 ATTACACGCT
*
32801171 ATGTACAGAAACGTGTGACACGTC
1 ATGTACAAAAACGTGTGACACGTC
32801195 ATGTACAAAAACGTGTGACACGTC
1 ATGTACAAAAACGTGTGACACGTC
* *
32801219 ATGTACAAAAACATGTGACACGCC
1 ATGTACAAAAACGTGTGACACGTC
32801243 ATG
1 ATG
32801246 GTTAAATTGT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.20
Consensus pattern (24 bp):
ATGTACAAAAACGTGTGACACGTC
Found at i:32801287 original size:30 final size:29
Alignment explanation
Indices: 32801252--32801343 Score: 107
Period size: 29 Copynumber: 3.2 Consensus size: 29
32801242 CATGGTTAAA
32801252 TTGTTACACGCCATGTTAAAAAAAATATTG
1 TTGTTACACGCCATGTT-AAAAAAATATTG
* * * *
32801282 TTGTTATACGTCATGTTGAAAAAATATTA
1 TTGTTACACGCCATGTTAAAAAAATATTG
* *
32801311 TTGTTACACGCCATATT-TAAAAATATT-
1 TTGTTACACGCCATGTTAAAAAAATATTG
32801338 TTGTTA
1 TTGTTA
32801344 TATTTTAATG
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
27 6 0.11
28 9 0.17
29 24 0.44
30 15 0.28
ACGTcount: A:0.37, C:0.11, G:0.12, T:0.40
Consensus pattern (29 bp):
TTGTTACACGCCATGTTAAAAAAATATTG
Found at i:32803766 original size:28 final size:27
Alignment explanation
Indices: 32803733--32803792 Score: 84
Period size: 28 Copynumber: 2.2 Consensus size: 27
32803723 CAATGCTGTA
* *
32803733 ATTCTTTTTATGTTGTGTATTCATTCTC
1 ATTCTTTATATGTTGTGTATTC-CTCTC
*
32803761 ATTCTTTATATGTTGTGTCTTCCTCTC
1 ATTCTTTATATGTTGTGTATTCCTCTC
32803788 ATTCT
1 ATTCT
32803793 CATTTACCGT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 9 0.31
28 20 0.69
ACGTcount: A:0.13, C:0.18, G:0.10, T:0.58
Consensus pattern (27 bp):
ATTCTTTATATGTTGTGTATTCCTCTC
Found at i:32807583 original size:22 final size:22
Alignment explanation
Indices: 32807547--32807598 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
32807537 AGTTGAGGAG
*
32807547 TTAAAT-TTATTAGACTAATTT
1 TTAAATATTATGAGACTAATTT
* *
32807568 TTAAGTATTATGAGACTGATTT
1 TTAAATATTATGAGACTAATTT
32807590 TTAAATATT
1 TTAAATATT
32807599 GCGTGACTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
21 5 0.19
22 21 0.81
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.50
Consensus pattern (22 bp):
TTAAATATTATGAGACTAATTT
Found at i:32807738 original size:23 final size:22
Alignment explanation
Indices: 32807705--32807828 Score: 95
Period size: 23 Copynumber: 5.5 Consensus size: 22
32807695 GCAATACCTA
*
32807705 AGTCACACAATGCTTTATTAACT
1 AGTCACACAATGC-TTATCAACT
* * *
32807728 AGTCACGCAATGCCTTATTAACA
1 AGTCACACAATG-CTTATCAACT
*
32807751 AGTCACACAATGCTTACCAACT
1 AGTCACACAATGCTTATCAACT
* ** * *
32807773 AATCATGCAATGCCATATCAACC
1 AGTCACACAATG-CTTATCAACT
* **
32807796 AGTCACACAATACTTAAAAACT
1 AGTCACACAATGCTTATCAACT
*
32807818 AGTCACGCAAT
1 AGTCACACAAT
32807829 ACCTAAAGTC
Statistics
Matches: 78, Mismatches: 21, Indels: 5
0.75 0.20 0.05
Matches are distributed among these distances:
22 32 0.41
23 45 0.58
24 1 0.01
ACGTcount: A:0.39, C:0.27, G:0.10, T:0.25
Consensus pattern (22 bp):
AGTCACACAATGCTTATCAACT
Found at i:32807800 original size:45 final size:45
Alignment explanation
Indices: 32807704--32807828 Score: 142
Period size: 45 Copynumber: 2.8 Consensus size: 45
32807694 AGCAATACCT
** * * *
32807704 AAGTCACACAATGCTTTATTAACTAGTCACGCAATGCCTTATTAAC
1 AAGTCACACAATGC-TTACCAACTAATCACGCAATGCCATATCAAC
*
32807750 AAGTCACACAATGCTTACCAACTAATCATGCAATGCCATATCAAC
1 AAGTCACACAATGCTTACCAACTAATCACGCAATGCCATATCAAC
* * ** *
32807795 CAGTCACACAATACTTAAAAACTAGTCACGCAAT
1 AAGTCACACAATGCTTACCAACTAATCACGCAAT
32807829 ACCTAAAGTC
Statistics
Matches: 67, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
45 53 0.79
46 14 0.21
ACGTcount: A:0.39, C:0.26, G:0.10, T:0.25
Consensus pattern (45 bp):
AAGTCACACAATGCTTACCAACTAATCACGCAATGCCATATCAAC
Found at i:32807848 original size:21 final size:21
Alignment explanation
Indices: 32807795--32807877 Score: 78
Period size: 21 Copynumber: 3.9 Consensus size: 21
32807785 CCATATCAAC
* * **
32807795 CAGTCACACAATACTTAAAAA
1 CAGTCACGCAATACCTAAAGT
32807816 CTAGTCACGCAATACCTAAAGT
1 C-AGTCACGCAATACCTAAAGT
*
32807838 CAGTCAGGCAATATCC-AAAGT
1 CAGTCACGCAATA-CCTAAAGT
* *
32807859 CAGTCATGCAATGCCTAAA
1 CAGTCACGCAATACCTAAA
32807878 AACTATTAAC
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
20 2 0.04
21 31 0.60
22 19 0.37
ACGTcount: A:0.41, C:0.25, G:0.13, T:0.20
Consensus pattern (21 bp):
CAGTCACGCAATACCTAAAGT
Found at i:32808073 original size:19 final size:20
Alignment explanation
Indices: 32808041--32808078 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
32808031 TTCACATATA
*
32808041 AAAAATCCTCCAAAATGCTT
1 AAAAATACTCCAAAATGCTT
32808061 AAAAATACT-CAAAATGCT
1 AAAAATACTCCAAAATGCT
32808079 CAAAGCTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.50, C:0.21, G:0.05, T:0.24
Consensus pattern (20 bp):
AAAAATACTCCAAAATGCTT
Found at i:32808082 original size:60 final size:60
Alignment explanation
Indices: 32808004--32808116 Score: 147
Period size: 60 Copynumber: 1.9 Consensus size: 60
32807994 CTTAACAAAG
* * * *
32808004 AATATTCAAAATGTTCAAAAGTTTTTCTTCACATAT-AAAAAATCCTCCAAAATGCTTAAA
1 AATACTCAAAATGCTC-AAAGCTTTTCTTCACATATCAAAAAATACTCCAAAATGCTTAAA
** *
32808064 AATACTCAAAATGCTCAAAGCTTTTCTTCGTATATCAAAAACTACTCCAAAAT
1 AATACTCAAAATGCTCAAAGCTTTTCTTCACATATCAAAAAATACTCCAAAAT
32808117 ACTCAAAATG
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
59 16 0.36
60 29 0.64
ACGTcount: A:0.43, C:0.19, G:0.05, T:0.32
Consensus pattern (60 bp):
AATACTCAAAATGCTCAAAGCTTTTCTTCACATATCAAAAAATACTCCAAAATGCTTAAA
Found at i:32808298 original size:3 final size:3
Alignment explanation
Indices: 32808277--32808349 Score: 110
Period size: 3 Copynumber: 23.7 Consensus size: 3
32808267 ACACCTCTAA
* *
32808277 AAT AAT ATAT AAT AGT AAT AAT AAT AAT AAT ATAT AAT AGT AAT AAT
1 AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT
32808324 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
32808350 AAGAGGAATG
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
3 58 0.91
4 6 0.09
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:32809404 original size:2 final size:2
Alignment explanation
Indices: 32809397--32809446 Score: 82
Period size: 2 Copynumber: 25.0 Consensus size: 2
32809387 AAAAGTTATT
* *
32809397 TA TA TA TA TG TG TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
32809439 TA TA TA TA
1 TA TA TA TA
32809447 GTTATGAATG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (2 bp):
TA
Found at i:32809545 original size:2 final size:2
Alignment explanation
Indices: 32809538--32809568 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
32809528 GTTTAGAAGA
32809538 AT AT AT AT AT AT AT AT -T AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32809569 CATAATAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:32809559 original size:13 final size:13
Alignment explanation
Indices: 32809541--32809566 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32809531 TAGAAGAATA
32809541 TATATATATATAT
1 TATATATATATAT
32809554 TATATATATATAT
1 TATATATATATAT
32809567 ATCATAATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
TATATATATATAT
Found at i:32809559 original size:15 final size:15
Alignment explanation
Indices: 32809539--32809568 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
32809529 TTTAGAAGAA
32809539 TATATATATATATAT
1 TATATATATATATAT
32809554 TATATATATATATAT
1 TATATATATATATAT
32809569 CATAATAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TATATATATATATAT
Found at i:32809826 original size:190 final size:189
Alignment explanation
Indices: 32809614--32809983 Score: 704
Period size: 190 Copynumber: 2.0 Consensus size: 189
32809604 TTTAGTTTTT
*
32809614 TTTTTAAATAATATAGTAATAATAATAAATAAATGATAAGAATAAAAAAGAAAAATAAAATGATT
1 TTTTTAAATAATATAGTAATAATAATAAATAAATGAGAAGAATAAAAAAGAAAAATAAAATGATT
32809679 ATTTGAGAAATTCCACCTAAGAAAGGTAAAGAGTTACCTCTATTAAGTGAGATTTTTTTTAGTGC
66 ATTTGAGAAATTCCACCTAAGAAAGGTAAAGAGTTACCTCTATTAAGTGAGATTTTTTTTAGTGC
32809744 GAAGTTCGAAGCGGATTTTTACCGAAGCGTCAGGATAAATCTGAACTCTAGATTTCAAA
131 GAAGTTCGAAGCGGATTTTTACCGAAGCGTCAGGATAAATCTGAACTCTAGATTTCAAA
*
32809803 NTTTTTAAATAATATAGTAATAATAATAAATAAATGAGAAGAATAAAAAAGAAAAATGAAATGAT
1 -TTTTTAAATAATATAGTAATAATAATAAATAAATGAGAAGAATAAAAAAGAAAAATAAAATGAT
*
32809868 TATTTGAGAAATTTCACCTAAGAAAGGTAAAGAGTTACCTCTATTAAGTGAGATTTTTTTTAGTG
65 TATTTGAGAAATTCCACCTAAGAAAGGTAAAGAGTTACCTCTATTAAGTGAGATTTTTTTTAGTG
32809933 CGAAGTTCGAAGCGGATTTTTACCGAAGCGTCAGGATAAATCTGAACTCTA
130 CGAAGTTCGAAGCGGATTTTTACCGAAGCGTCAGGATAAATCTGAACTCTA
32809984 TACTTCAATA
Statistics
Matches: 177, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
190 177 1.00
ACGTcount: A:0.43, C:0.09, G:0.16, T:0.31
Consensus pattern (189 bp):
TTTTTAAATAATATAGTAATAATAATAAATAAATGAGAAGAATAAAAAAGAAAAATAAAATGATT
ATTTGAGAAATTCCACCTAAGAAAGGTAAAGAGTTACCTCTATTAAGTGAGATTTTTTTTAGTGC
GAAGTTCGAAGCGGATTTTTACCGAAGCGTCAGGATAAATCTGAACTCTAGATTTCAAA
Found at i:32810044 original size:17 final size:17
Alignment explanation
Indices: 32810018--32810071 Score: 65
Period size: 17 Copynumber: 3.1 Consensus size: 17
32810008 TAATTGTTTA
*
32810018 AAAAATATAAAATAAAAT
1 AAAAATA-ATAATAAAAT
32810036 AATAAATAATAA-AAAGAT
1 AA-AAATAATAATAAA-AT
32810054 AAAAATAATAATAAAAT
1 AAAAATAATAATAAAAT
32810071 A
1 A
32810072 GCAAATAACA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
17 15 0.47
18 12 0.38
19 5 0.16
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (17 bp):
AAAAATAATAATAAAAT
Found at i:32810049 original size:20 final size:22
Alignment explanation
Indices: 32810020--32810072 Score: 62
Period size: 20 Copynumber: 2.6 Consensus size: 22
32810010 ATTGTTTAAA
*
32810020 AAAT-ATAAAATA-A-AATAAT
1 AAATAATAAAATAGATAAAAAT
32810039 AAATAATAAAA-AGATAAAAAT
1 AAATAATAAAATAGATAAAAAT
32810060 -AATAATAAAATAG
1 AAATAATAAAATAG
32810073 CAAATAACAT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
19 5 0.17
20 17 0.59
21 7 0.24
ACGTcount: A:0.74, C:0.00, G:0.04, T:0.23
Consensus pattern (22 bp):
AAATAATAAAATAGATAAAAAT
Found at i:32812403 original size:120 final size:121
Alignment explanation
Indices: 32812167--32812424 Score: 315
Period size: 120 Copynumber: 2.1 Consensus size: 121
32812157 TGACAATACT
* * ** * *
32812167 AATTCTCATTATTCAAGTGACTTCAATAAGTTGAGCAATTCAGAAAAATCTGCGAAGGATGAAAA
1 AATTCTCATGATTCAAGTGACTCCAATAAGACGAGCAATTAAGAAAAATCTACGAAGGATGAAAA
* * *
32812232 AAATCAATATCCATGATTTAAGTGACTCACGGAAATCTAAACAGAAGGATAAAGTC
66 AAATCAATATCCATGATTCAAGTGACTCACGGAAATCTAAACAAAAGGATAAAATC
* *
32812288 AATTTTCATGATTCAAGTGACTCCAATAAGACGAGCAATTTAAG-AAAATCTAC-TAGAGATG-A
1 AATTCTCATGATTCAAGTGACTCCAATAAGACGAGCAA-TTAAGAAAAATCTACGAAG-GATGAA
* * ** * * *
32812350 TAAAATCAATTTCCATGATTCAAGTGACTTGCGGAAATCTAAATAAAATGATAAAATT
64 AAAAATCAATATCCATGATTCAAGTGACTCACGGAAATCTAAACAAAAGGATAAAATC
32812408 AATTCTCATGATTCAAG
1 AATTCTCATGATTCAAG
32812425 CAACATGTGT
Statistics
Matches: 116, Mismatches: 19, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
120 67 0.58
121 45 0.39
122 4 0.03
ACGTcount: A:0.43, C:0.14, G:0.15, T:0.28
Consensus pattern (121 bp):
AATTCTCATGATTCAAGTGACTCCAATAAGACGAGCAATTAAGAAAAATCTACGAAGGATGAAAA
AAATCAATATCCATGATTCAAGTGACTCACGGAAATCTAAACAAAAGGATAAAATC
Found at i:32812439 original size:51 final size:51
Alignment explanation
Indices: 32812346--32812492 Score: 143
Period size: 51 Copynumber: 2.9 Consensus size: 51
32812336 TCTACTAGAG
* ** * * *
32812346 ATGATAAAATCAATT-TCCATGATTCAAGTGACTTGCGGAAATCTAAATAAA
1 ATGATAAAATAAATTCT-CATGATTCAAGCAACATGCGAAAATCTAAAGAAA
* * * * *
32812397 ATGATAAAATTAATTCTCATGATTCAAGCAACATGTGTAAATCTAGAGAGA
1 ATGATAAAATAAATTCTCATGATTCAAGCAACATGCGAAAATCTAAAGAAA
** * *
32812448 ATGATAAAGCAAATTCCCATGATTCAAGCAACATGGGAAAATCTA
1 ATGATAAAATAAATTCTCATGATTCAAGCAACATGCGAAAATCTA
32812493 CGAAGATGGA
Statistics
Matches: 80, Mismatches: 15, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
51 79 0.99
52 1 0.01
ACGTcount: A:0.44, C:0.14, G:0.15, T:0.27
Consensus pattern (51 bp):
ATGATAAAATAAATTCTCATGATTCAAGCAACATGCGAAAATCTAAAGAAA
Found at i:32818163 original size:56 final size:56
Alignment explanation
Indices: 32818077--32818188 Score: 206
Period size: 56 Copynumber: 2.0 Consensus size: 56
32818067 CCAATTACAA
*
32818077 AACAAAGTGCCAAACCTTTTCCCTCCTAAATCTGCAAACATCCACTCCCACCGGTC
1 AACAAAGTGCCAAACCATTTCCCTCCTAAATCTGCAAACATCCACTCCCACCGGTC
*
32818133 AACAAAGTGTCAAACCATTTCCCTCCTAAATCTGCAAACATCCACTCCCACCGGTC
1 AACAAAGTGCCAAACCATTTCCCTCCTAAATCTGCAAACATCCACTCCCACCGGTC
32818189 CAGTTTTCCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.31, C:0.38, G:0.09, T:0.21
Consensus pattern (56 bp):
AACAAAGTGCCAAACCATTTCCCTCCTAAATCTGCAAACATCCACTCCCACCGGTC
Found at i:32820866 original size:14 final size:14
Alignment explanation
Indices: 32820849--32820884 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
32820839 AAAAAAAAAT
*
32820849 ATTAAAAAAATTTG
1 ATTAAAAAAATTTA
*
32820863 ATTATAAAAATTTA
1 ATTAAAAAAATTTA
32820877 ATTAAAAA
1 ATTAAAAA
32820885 TTTTACATCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (14 bp):
ATTAAAAAAATTTA
Found at i:32823429 original size:2 final size:2
Alignment explanation
Indices: 32823422--32823458 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
32823412 TTAATGAGAC
* *
32823422 AT AT AT AT AT AT AT AT AT GT AT AT AT AT GT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
32823459 AGCATATTAG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (2 bp):
AT
Found at i:32823465 original size:10 final size:10
Alignment explanation
Indices: 32823422--32823458 Score: 65
Period size: 10 Copynumber: 3.7 Consensus size: 10
32823412 TTAATGAGAC
*
32823422 ATATATATAT
1 ATATATATGT
32823432 ATATATATGT
1 ATATATATGT
32823442 ATATATATGT
1 ATATATATGT
32823452 ATATATA
1 ATATATA
32823459 AGCATATTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (10 bp):
ATATATATGT
Found at i:32825107 original size:12 final size:12
Alignment explanation
Indices: 32825090--32825140 Score: 63
Period size: 12 Copynumber: 4.5 Consensus size: 12
32825080 GCCCACCTTC
32825090 TGGAGGCGGTGG
1 TGGAGGCGGTGG
32825102 TGGAGGC---GG
1 TGGAGGCGGTGG
* *
32825111 TGGAGGTGGAGG
1 TGGAGGCGGTGG
32825123 TGGAGGCGGTGG
1 TGGAGGCGGTGG
32825135 TGGAGG
1 TGGAGG
32825141 TGGAGGTGGG
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
9 8 0.24
12 25 0.76
ACGTcount: A:0.12, C:0.06, G:0.67, T:0.16
Consensus pattern (12 bp):
TGGAGGCGGTGG
Found at i:32825120 original size:6 final size:6
Alignment explanation
Indices: 32825109--32825149 Score: 64
Period size: 6 Copynumber: 6.8 Consensus size: 6
32825099 TGGTGGAGGC
* *
32825109 GGTGGA GGTGGA GGTGGA GGCGGT GGTGGA GGTGGA GGTGG
1 GGTGGA GGTGGA GGTGGA GGTGGA GGTGGA GGTGGA GGTGG
32825150 GGGTAGCTCT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.12, C:0.02, G:0.68, T:0.17
Consensus pattern (6 bp):
GGTGGA
Found at i:32825124 original size:24 final size:24
Alignment explanation
Indices: 32825097--32825149 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
32825087 TTCTGGAGGC
*
32825097 GGTGGTGGAGGCGGTGGAGGTGGA
1 GGTGGAGGAGGCGGTGGAGGTGGA
* *
32825121 GGTGGAGGCGGTGGTGGAGGTGGA
1 GGTGGAGGAGGCGGTGGAGGTGGA
32825145 GGTGG
1 GGTGG
32825150 GGGTAGCTCT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.11, C:0.04, G:0.68, T:0.17
Consensus pattern (24 bp):
GGTGGAGGAGGCGGTGGAGGTGGA
Found at i:32827519 original size:132 final size:134
Alignment explanation
Indices: 32827274--32827524 Score: 416
Period size: 132 Copynumber: 1.9 Consensus size: 134
32827264 AAAAAGGAGA
*
32827274 TTGAATTCTCTAAAGGAGGAATTCAGACCCAAACCAGATATATTTCTTTTCATTTCATATCACAA
1 TTGAATTCTCTAAAGGAGGAATTCAAACCCAAACCAGATATATTTC--TT-ATTTCATATCACAA
*
32827339 TTCACTTAATCCAAGTGTGCGGTATTAAAGAAGTATCCAACACGTTCAGAGGATATCACTATCAT
63 TTCACTTAATCCAAGTGTGCGGCATTAAAGAAGTATCCAACACGTTCAGAGGATATCACTATCAT
32827404 TGATATC
128 TGATATC
*
32827411 TTGAATTCTCTAAAGGAGGAATTCAAACCCAAACCAGATATATTTC-T-TTTCATATCATAATTC
1 TTGAATTCTCTAAAGGAGGAATTCAAACCCAAACCAGATATATTTCTTATTTCATATCACAATTC
* *
32827474 ACTTAATCCAAGTGTGCTGCATTAAAGAAGTATTCAACACGTTCAGAGGAT
66 ACTTAATCCAAGTGTGCGGCATTAAAGAAGTATCCAACACGTTCAGAGGAT
32827525 CACCATCAAT
Statistics
Matches: 109, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
132 63 0.58
134 1 0.01
137 45 0.41
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.32
Consensus pattern (134 bp):
TTGAATTCTCTAAAGGAGGAATTCAAACCCAAACCAGATATATTTCTTATTTCATATCACAATTC
ACTTAATCCAAGTGTGCGGCATTAAAGAAGTATCCAACACGTTCAGAGGATATCACTATCATTGA
TATC
Found at i:32828391 original size:19 final size:20
Alignment explanation
Indices: 32828369--32828414 Score: 53
Period size: 18 Copynumber: 2.4 Consensus size: 20
32828359 TAAAAAACTC
32828369 TTTAAAAAAAGT-AATT-TTT
1 TTTAAAAAAA-TAAATTATTT
*
32828388 TTT-AAAGAATAAATTATTT
1 TTTAAAAAAATAAATTATTT
32828407 TTTAAAAA
1 TTTAAAAA
32828415 GACTTCAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
17 1 0.05
18 9 0.41
19 9 0.41
20 3 0.14
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (20 bp):
TTTAAAAAAATAAATTATTT
Found at i:32829477 original size:21 final size:21
Alignment explanation
Indices: 32829451--32829493 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
32829441 GCCTCCTCCA
* *
32829451 GATGGAGTTGGACAGGGAGTG
1 GATGGAGATGAACAGGGAGTG
32829472 GATGGAGATGAACAGGGAGTG
1 GATGGAGATGAACAGGGAGTG
32829493 G
1 G
32829494 GCTTTGGTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.28, C:0.05, G:0.51, T:0.16
Consensus pattern (21 bp):
GATGGAGATGAACAGGGAGTG
Found at i:32833107 original size:14 final size:14
Alignment explanation
Indices: 32833088--32833115 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
32833078 AATATTCTAG
32833088 CTTAAAAAAGTTTT
1 CTTAAAAAAGTTTT
32833102 CTTAAAAAAGTTTT
1 CTTAAAAAAGTTTT
32833116 GAGTTCTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
Consensus pattern (14 bp):
CTTAAAAAAGTTTT
Found at i:32836929 original size:74 final size:74
Alignment explanation
Indices: 32836766--32836935 Score: 281
Period size: 74 Copynumber: 2.3 Consensus size: 74
32836756 TCATATTTGG
* *
32836766 GAAGCGAAAACTCGAGAG-TTTTTTGAGATCTTTCATTTTCCTTTGATCATCACTGTTTTCCAAC
1 GAAGCGAAAACTCGAGAGTTTTTTTGAGATCTTTCATTTTCCTTTGATCATCACTGATTCCCAAC
32836830 TTGCAATGT
66 TTGCAATGT
*
32836839 GAAGCGAAGAA-GCGAGAGTTTTTTTGAGATCTTTCATTTTCCTTTGATCATCACTGATTCCCAA
1 GAAGCGAA-AACTCGAGAGTTTTTTTGAGATCTTTCATTTTCCTTTGATCATCACTGATTCCCAA
32836903 CTTGCAATGT
65 CTTGCAATGT
*
32836913 GAAGCGAAAACTCGAGAATTTTT
1 GAAGCGAAAACTCGAGAGTTTTT
32836936 CTCCTTTCAT
Statistics
Matches: 89, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
73 16 0.18
74 73 0.82
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.36
Consensus pattern (74 bp):
GAAGCGAAAACTCGAGAGTTTTTTTGAGATCTTTCATTTTCCTTTGATCATCACTGATTCCCAAC
TTGCAATGT
Found at i:32840522 original size:32 final size:32
Alignment explanation
Indices: 32840486--32840563 Score: 138
Period size: 32 Copynumber: 2.4 Consensus size: 32
32840476 TTAGACACAC
32840486 CCATTGCATATTAATTAATATATGGTAATGAG
1 CCATTGCATATTAATTAATATATGGTAATGAG
*
32840518 CCATTGCATATTAATTAATATATGGTGATGAG
1 CCATTGCATATTAATTAATATATGGTAATGAG
*
32840550 CCATTGCATGTTAA
1 CCATTGCATATTAA
32840564 AAATTTGATG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 44 1.00
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.37
Consensus pattern (32 bp):
CCATTGCATATTAATTAATATATGGTAATGAG
Found at i:32862316 original size:24 final size:25
Alignment explanation
Indices: 32862287--32862351 Score: 71
Period size: 24 Copynumber: 2.6 Consensus size: 25
32862277 TATTTAAAAA
*
32862287 TATTTAAATAAATTTTTAT-TTTTT
1 TATTTAAATAAATTTTTATAATTTT
*
32862311 TATTT-AATCAATTTTTTATAATTTT
1 TATTTAAAT-AAATTTTTATAATTTT
32862336 TATTTTAAATTAAATT
1 TA-TTTAAA-TAAATT
32862352 AATTTTTATA
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
23 3 0.09
24 14 0.42
25 6 0.18
26 3 0.09
27 6 0.18
28 1 0.03
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (25 bp):
TATTTAAATAAATTTTTATAATTTT
Found at i:32868087 original size:2 final size:2
Alignment explanation
Indices: 32868075--32868120 Score: 69
Period size: 2 Copynumber: 23.5 Consensus size: 2
32868065 AATAGAGAAA
32868075 AT AT A- AT AT AT AT AT ACT AT AT AT AT AT AT AT AT AT AT AT -T
1 AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT
32868116 AT AT A
1 AT AT A
32868121 AATTAAGTAG
Statistics
Matches: 41, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
1 2 0.05
2 37 0.90
3 2 0.05
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:32868110 original size:23 final size:22
Alignment explanation
Indices: 32868075--32868120 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 22
32868065 AATAGAGAAA
32868075 ATATAATATATATATACTATAT
1 ATATAATATATATATACTATAT
*
32868097 ATATATATATATATATATTATAT
1 ATATA-ATATATATATACTATAT
32868120 A
1 A
32868121 AATTAAGTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 5 0.23
23 17 0.77
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (22 bp):
ATATAATATATATATACTATAT
Found at i:32880001 original size:30 final size:30
Alignment explanation
Indices: 32879965--32880024 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
32879955 TCAACTGTGC
32879965 AGGAAAGTTAATATGTTTTACTGATAGCAA
1 AGGAAAGTTAATATGTTTTACTGATAGCAA
*
32879995 AGGAAAGTTTATATGTTTTACTGATAGCAA
1 AGGAAAGTTAATATGTTTTACTGATAGCAA
32880025 CTTGTAATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.38, C:0.07, G:0.20, T:0.35
Consensus pattern (30 bp):
AGGAAAGTTAATATGTTTTACTGATAGCAA
Found at i:32882522 original size:31 final size:30
Alignment explanation
Indices: 32882487--32882565 Score: 72
Period size: 32 Copynumber: 2.5 Consensus size: 30
32882477 TCATAGGGAT
*
32882487 TAAATTGAAAAAAAATGTATGATATATG-GAC
1 TAAATTGAAAAAAAATGTA-GA-ATATGAAAC
*
32882518 TAAATT-AAATTAAAAATTTAGAATATGAAAAC
1 TAAATTGAAA--AAAAATGTAGAATATG-AAAC
32882550 TAAATTGAATAAAAAA
1 TAAATTGAA-AAAAAA
32882566 ATATTTTTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
30 8 0.20
31 8 0.20
32 21 0.52
33 2 0.05
34 1 0.03
ACGTcount: A:0.58, C:0.03, G:0.10, T:0.29
Consensus pattern (30 bp):
TAAATTGAAAAAAAATGTAGAATATGAAAC
Found at i:32896693 original size:11 final size:12
Alignment explanation
Indices: 32896677--32896707 Score: 55
Period size: 11 Copynumber: 2.7 Consensus size: 12
32896667 TTTTACGCAA
32896677 TCTATCTATCT-
1 TCTATCTATCTC
32896688 TCTATCTATCTC
1 TCTATCTATCTC
32896700 TCTATCTA
1 TCTATCTA
32896708 CTTATCTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 11 0.58
12 8 0.42
ACGTcount: A:0.19, C:0.29, G:0.00, T:0.52
Consensus pattern (12 bp):
TCTATCTATCTC
Found at i:32929603 original size:6 final size:6
Alignment explanation
Indices: 32929592--32929621 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
32929582 CAGCTGCTTT
*
32929592 TCTTCA TCTTCA TCTTCA TCTTCT TCTTCA
1 TCTTCA TCTTCA TCTTCA TCTTCA TCTTCA
32929622 CGAACTCAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.13, C:0.33, G:0.00, T:0.53
Consensus pattern (6 bp):
TCTTCA
Done.