Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr4
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 31929104
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 1434590 characters in sequence are not A, C, G, or T
File 22 of 82
Found at i:7585790 original size:55 final size:54
Alignment explanation
Indices: 7585599--7585855 Score: 253
Period size: 55 Copynumber: 4.7 Consensus size: 54
7585589 TTCAACGTGG
** *
7585599 CATGGCATGTAACAACTAAAATTTTCAACATGATATGTAACAACTAAAGCTTCAA
1 CATGGCATGTAACAACT-AAATTTTCAACATGGCATGTAACAACTAAAGTTTCAA
* * * *** ** *
7585654 CATGGTATGTAACAACTAAACTTCCAACATGATGTGTAACAACTATATTTTTTAA
1 CATGGCATGTAACAACTAAATTTTCAACATGGCATGTAACAACTA-AAGTTTCAA
* *
7585709 CATGGCATGTAACAACTAAATCTTCAACATGGCATGCAACAACTAAAGTTTCAA
1 CATGGCATGTAACAACTAAATTTTCAACATGGCATGTAACAACTAAAGTTTCAA
* * * * * * *
7585763 CATGACGTGTAACAACTACATTTTTCAACATGGCCTATAACAATTAAATTTTCAA
1 CATGGCATGTAACAACTA-AATTTTCAACATGGCATGTAACAACTAAAGTTTCAA
** * * *
7585818 CATGGTGTGTAACTACTATATTTTCAAAATGGCATGTA
1 CATGGCATGTAACAACTAAATTTTCAACATGGCATGTA
7585856 TCAATTATTT
Statistics
Matches: 164, Mismatches: 36, Indels: 5
0.80 0.18 0.02
Matches are distributed among these distances:
54 62 0.38
55 102 0.62
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.31
Consensus pattern (54 bp):
CATGGCATGTAACAACTAAATTTTCAACATGGCATGTAACAACTAAAGTTTCAA
Found at i:7585843 original size:82 final size:82
Alignment explanation
Indices: 7585606--7585844 Score: 298
Period size: 82 Copynumber: 2.9 Consensus size: 82
7585596 TGGCATGGCA
* ** *
7585606 TGTAACAACTAAAATTTTCAACATGATATGTAACAACTAAAGCTTCAACATGGTATGTAACAACT
1 TGTAACAACTAAATTTTTCAACATGGCATGTAACAACTAAATCTTCAACATGGTATGTAACAACT
* *
7585671 AAACTTCCAACATGATG
66 AAACTTTCAACATGACG
* * * *
7585688 TGTAACAACTATATTTTTTAACATGGCATGTAACAACTAAATCTTCAACATGGCATGCAACAACT
1 TGTAACAACTAAATTTTTCAACATGGCATGTAACAACTAAATCTTCAACATGGTATGTAACAACT
*
7585753 AAAGTTTCAACATGACG
66 AAACTTTCAACATGACG
* * * * * * *
7585770 TGTAACAACTACATTTTTCAACATGGCCTATAACAATTAAATTTTCAACATGGTGTGTAACTACT
1 TGTAACAACTAAATTTTTCAACATGGCATGTAACAACTAAATCTTCAACATGGTATGTAACAACT
* *
7585835 ATATTTTCAA
66 AAACTTTCAA
7585845 AATGGCATGT
Statistics
Matches: 134, Mismatches: 23, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
82 134 1.00
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.31
Consensus pattern (82 bp):
TGTAACAACTAAATTTTTCAACATGGCATGTAACAACTAAATCTTCAACATGGTATGTAACAACT
AAACTTTCAACATGACG
Found at i:7590527 original size:36 final size:32
Alignment explanation
Indices: 7590479--7590554 Score: 80
Period size: 34 Copynumber: 2.2 Consensus size: 32
7590469 TTTTTGTTTA
** *
7590479 TTTTTTTCTTCTATTTTTTCTGCCATGTTCTATT
1 TTTTTTTCTTCTA-TTAAT-TGCCATGTTCCATT
7590513 TTTTTTTCTTTTCTATTAATTGCCATGTTCCATT
1 TTTTTTTC--TTCTATTAATTGCCATGTTCCATT
7590547 TATTTTTT
1 T-TTTTTT
7590555 TATTTTTAGT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
34 22 0.61
35 9 0.25
36 5 0.14
ACGTcount: A:0.12, C:0.16, G:0.05, T:0.67
Consensus pattern (32 bp):
TTTTTTTCTTCTATTAATTGCCATGTTCCATT
Found at i:7592789 original size:35 final size:33
Alignment explanation
Indices: 7592738--7592908 Score: 152
Period size: 35 Copynumber: 5.1 Consensus size: 33
7592728 GAAAAGTTAG
* *
7592738 TTGTTGGGTTTTGGTTGATCCCATGAAAAACCA
1 TTGTTGGGTTTTGGTTGAGCCCTTGAAAAACCA
* *
7592771 TTGTTGTAGGTTGTGGTTGAGCCTTTGAAAAACCA
1 TTGTTG--GGTTTTGGTTGAGCCCTTGAAAAACCA
* * *
7592806 CT-TTGGGTTTTGGTTGAGCCCGTGAAAAGCCA
1 TTGTTGGGTTTTGGTTGAGCCCTTGAAAAACCA
* *
7592838 TTG-TGAAAGGTTGTGGTTGAGCCTTTGAAAAACCA
1 TTGTTG---GGTTTTGGTTGAGCCCTTGAAAAACCA
* * *
7592873 CT-TTGGGTTTTGGTTGA-TCCTGGTAAAAACCA
1 TTGTTGGGTTTTGGTTGAGCCCTTG-AAAAACCA
7592905 TTGT
1 TTGT
7592909 GAAAGGTTTT
Statistics
Matches: 109, Mismatches: 20, Indels: 18
0.74 0.14 0.12
Matches are distributed among these distances:
31 3 0.03
32 46 0.42
33 7 0.06
34 3 0.03
35 50 0.46
ACGTcount: A:0.23, C:0.14, G:0.27, T:0.36
Consensus pattern (33 bp):
TTGTTGGGTTTTGGTTGAGCCCTTGAAAAACCA
Found at i:7592819 original size:67 final size:67
Alignment explanation
Indices: 7592741--7592916 Score: 261
Period size: 67 Copynumber: 2.6 Consensus size: 67
7592731 AAGTTAGTTG
*
7592741 TTGGGTTTTGGTTGATCCCATGAAAAACCATTGTTG-TAGGTTGTGGTTGAGCCTTTGAAAAACC
1 TTGGGTTTTGGTTGATCCC-TGAAAAACCATTGTTGAAAGGTTGTGGTTGAGCCTTTGAAAAACC
7592805 ACT
65 ACT
* *
7592808 TTGGGTTTTGGTTGAGCCCGTGAAAAGCCATTG-TGAAAGGTTGTGGTTGAGCCTTTGAAAAACC
1 TTGGGTTTTGGTTGATCCC-TGAAAAACCATTGTTGAAAGGTTGTGGTTGAGCCTTTGAAAAACC
7592872 ACT
65 ACT
7592875 TTGGGTTTTGGTTGAT-CCTGGTAAAAACCATTG-TGAAAGGTT
1 TTGGGTTTTGGTTGATCCCT-G-AAAAACCATTGTTGAAAGGTT
7592917 TTGGCTAAGC
Statistics
Matches: 100, Mismatches: 6, Indels: 6
0.89 0.05 0.05
Matches are distributed among these distances:
65 1 0.01
66 5 0.05
67 94 0.94
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.35
Consensus pattern (67 bp):
TTGGGTTTTGGTTGATCCCTGAAAAACCATTGTTGAAAGGTTGTGGTTGAGCCTTTGAAAAACCA
CT
Found at i:7598024 original size:17 final size:17
Alignment explanation
Indices: 7598002--7598037 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
7597992 AAACAAAATA
7598002 AGCACACAATAAGGGGG
1 AGCACACAATAAGGGGG
* *
7598019 AGCACACACTTAGGGGG
1 AGCACACAATAAGGGGG
7598036 AG
1 AG
7598038 TAATCCTCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.36, C:0.19, G:0.36, T:0.08
Consensus pattern (17 bp):
AGCACACAATAAGGGGG
Found at i:7598992 original size:35 final size:33
Alignment explanation
Indices: 7598951--7599129 Score: 177
Period size: 35 Copynumber: 5.3 Consensus size: 33
7598941 GTTGATCCCA
*
7598951 TGAAAAACCTTTGTTGTAGGTTGTGGTTGAGCCTT
1 TGAAAAACCATTG-TG-AGGTTGTGGTTGAGCCTT
* * **
7598986 TAAAAAACCACTT-TG-GGTTTTGGTTGAGCCCA
1 TGAAAAACCA-TTGTGAGGTTGTGGTTGAGCCTT
*
7599018 TGAAAAACCATTGTGAAAGATTGTGGTTGAGCCTT
1 TGAAAAACCATTGTG--AGGTTGTGGTTGAGCCTT
* **
7599053 TGAAAAACCACTTG-G-GGTTTTGGTTGAGCCCG
1 TGAAAAACCA-TTGTGAGGTTGTGGTTGAGCCTT
7599085 TGAAAAACCATTGTGAAAGGTTGTGGTTGAGCCTT
1 TGAAAAACCATTGTG--AGGTTGTGGTTGAGCCTT
7599120 TGAAAAACCA
1 TGAAAAACCA
7599130 CTTTGAATTT
Statistics
Matches: 117, Mismatches: 17, Indels: 20
0.76 0.11 0.13
Matches are distributed among these distances:
31 5 0.04
32 49 0.42
34 2 0.02
35 56 0.48
36 5 0.04
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (33 bp):
TGAAAAACCATTGTGAGGTTGTGGTTGAGCCTT
Found at i:7599012 original size:67 final size:67
Alignment explanation
Indices: 7598931--7599195 Score: 356
Period size: 67 Copynumber: 4.0 Consensus size: 67
7598921 AAGTTAGTTG
* * * * *
7598931 TTGGGTTTTTGTTGATCCCATGAAAAACCTTTGTTG-TAGGTTGTGGTTGAGCCTTTAAAAAACC
1 TTGGGTTTTGGTTGAGCCCATGAAAAACCATTG-TGAAAGGTTGTGGTTGAGCCTTTGAAAAACC
7598995 ACT
65 ACT
*
7598998 TTGGGTTTTGGTTGAGCCCATGAAAAACCATTGTGAAAGATTGTGGTTGAGCCTTTGAAAAACCA
1 TTGGGTTTTGGTTGAGCCCATGAAAAACCATTGTGAAAGGTTGTGGTTGAGCCTTTGAAAAACCA
7599063 CT
66 CT
* *
7599065 TGGGGTTTTGGTTGAGCCCGTGAAAAACCATTGTGAAAGGTTGTGGTTGAGCCTTTGAAAAACCA
1 TTGGGTTTTGGTTGAGCCCATGAAAAACCATTGTGAAAGGTTGTGGTTGAGCCTTTGAAAAACCA
7599130 CT
66 CT
** * * * * *
7599132 TTGAATTTTGGTTGATCCCGATG-AAAACCATTGTGAAAGGTTTTGGCTAAGCC-TGGAAAAACC
1 TTGGGTTTTGGTTGAGCCC-ATGAAAAACCATTGTGAAAGGTTGTGGTTGAGCCTTTGAAAAACC
7599195 A
65 A
7599196 ATTGTAAAGC
Statistics
Matches: 178, Mismatches: 18, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
66 12 0.07
67 164 0.92
68 2 0.01
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.32
Consensus pattern (67 bp):
TTGGGTTTTGGTTGAGCCCATGAAAAACCATTGTGAAAGGTTGTGGTTGAGCCTTTGAAAAACCA
CT
Found at i:7603696 original size:56 final size:55
Alignment explanation
Indices: 7603622--7603738 Score: 171
Period size: 56 Copynumber: 2.1 Consensus size: 55
7603612 TCATGCACAA
* *
7603622 CAACACCTTAAACTAAGCTCAATAAACTCACGCTCATTAGTAAATCGAATCATGAT
1 CAACATCTTAAACCAAGCTCAATAAACTCACGCTCATTAGTAAATC-AATCATGAT
* * * *
7603678 CAACATCTTAAACCAAGCTTAATAAACTCATGGTCATTAGTAAATCAATCATGCT
1 CAACATCTTAAACCAAGCTCAATAAACTCACGCTCATTAGTAAATCAATCATGAT
7603733 CAACAT
1 CAACAT
7603739 GTCACGTCCC
Statistics
Matches: 55, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
55 14 0.25
56 41 0.75
ACGTcount: A:0.41, C:0.24, G:0.09, T:0.26
Consensus pattern (55 bp):
CAACATCTTAAACCAAGCTCAATAAACTCACGCTCATTAGTAAATCAATCATGAT
Found at i:7604283 original size:56 final size:55
Alignment explanation
Indices: 7604209--7604325 Score: 162
Period size: 56 Copynumber: 2.1 Consensus size: 55
7604199 TCATGCACAA
* *
7604209 CAACACCTTAAACTAAGCTCAATAAACTCACGCTCATAAGTAAATCGAATCATGAT
1 CAACATCTTAAACCAAGCTCAATAAACTCACGCTCATAAGTAAATC-AATCATGAT
* * * * *
7604265 CAACATCTTAAACCAAGCTTAATAAACTCATGGTCATTAGTAAATCAATCATGCT
1 CAACATCTTAAACCAAGCTCAATAAACTCACGCTCATAAGTAAATCAATCATGAT
7604320 CAACAT
1 CAACAT
7604326 GTCACGTCCC
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
55 14 0.26
56 40 0.74
ACGTcount: A:0.42, C:0.24, G:0.09, T:0.26
Consensus pattern (55 bp):
CAACATCTTAAACCAAGCTCAATAAACTCACGCTCATAAGTAAATCAATCATGAT
Found at i:7604491 original size:587 final size:587
Alignment explanation
Indices: 7603379--7604544 Score: 2224
Period size: 587 Copynumber: 2.0 Consensus size: 587
7603369 TAATCTGAAA
* **
7603379 GATTTGTTTCACACTTTTGAAAATTGTTTACATAGTAGTATTTATTTACGTACTTATATGCTCTC
1 GATTTGTTTCACACTTTTGAAAACTACTTACATAGTAGTATTTATTTACGTACTTATATGCTCTC
* *
7603444 AAAACCCCTTTACAAATCCAACATTTCTAATCATGTTTCCGTGGCACTTTAAATTAGCCAAGCTA
66 AAAACCCCTTTACAAATCCAACATTTCGAATCATGTTTCCATGGCACTTTAAATTAGCCAAGCTA
7603509 TCATTTAAATCATGCTCAATAGTAACTTAGATTATCAAAGCTAATGGCAATAAAACCATGTCTAG
131 TCATTTAAATCATGCTCAATAGTAACTTAGATTATCAAAGCTAATGGCAATAAAACCATGTCTAG
* *
7603574 TTTTAGCAATCGAAAACCATGCTTAGTAGCAAATCAACTCATGCACAACAACACCTTAAACTAAG
196 TTCTAGCAATCGAAAACCATGCTTAATAGCAAATCAACTCATGCACAACAACACCTTAAACTAAG
*
7603639 CTCAATAAACTCACGCTCATTAGTAAATCGAATCATGATCAACATCTTAAACCAAGCTTAATAAA
261 CTCAATAAACTCACGCTCATAAGTAAATCGAATCATGATCAACATCTTAAACCAAGCTTAATAAA
*
7603704 CTCATGGTCATTAGTAAATCAATCATGCTCAACATGTCACGTCCCATTTTTGAGACATGACCAGC
326 CTCATGGTCATTAGTAAATCAATCATGCTCAACATGTCACGTCCCATTTTCGAGACATGACCAGC
* *
7603769 TCATTAACCTGTGTGGGTATGGCCCACTAGGCTTAGAAAGCCTTACATATATCATGTGTGAGCTG
391 TCATTAACCTATGTGGGTATGGCCCACTAGGCTTAGAAAGCCTTACACATATCATGTGTGAGCTG
7603834 GTCATCCACCATATCTATACATCAACACAATTATATAAACATTATCACACAATTATGGAACTTTT
456 GTCATCCACCATATCTATACATCAACACAATTATATAAACATTATCACACAATTATGGAACTTTT
7603899 CAACATAATGTGTGGATCATTATACATACATTCATATGTACATGCCATCACACAATCATAGTAGT
521 CAACATAATGTGTGGATCATTATACATACATTCATATGTACATGCCATCACACAATCATAGTAGT
7603964 AT
586 AT
7603966 GATTTGTTTCACACTTTTGAAAACTACTTACATAGTAGTATTTATTTACGTACTTATATGCTCTC
1 GATTTGTTTCACACTTTTGAAAACTACTTACATAGTAGTATTTATTTACGTACTTATATGCTCTC
7604031 AAAACCCCTTTACAAATCCAACATTTCGAATCATGTTTCCATGGCACTTTAAATTAGCCAAGCTA
66 AAAACCCCTTTACAAATCCAACATTTCGAATCATGTTTCCATGGCACTTTAAATTAGCCAAGCTA
7604096 TCATTTAAATCATGCTCAATAGTAACTTAGATTATCAAAGCTAATGGCAATAAAACCATGTCTAG
131 TCATTTAAATCATGCTCAATAGTAACTTAGATTATCAAAGCTAATGGCAATAAAACCATGTCTAG
7604161 TTCTAGCAATCGAAAACCATGCTTAATAGCAAATCAACTCATGCACAACAACACCTTAAACTAAG
196 TTCTAGCAATCGAAAACCATGCTTAATAGCAAATCAACTCATGCACAACAACACCTTAAACTAAG
7604226 CTCAATAAACTCACGCTCATAAGTAAATCGAATCATGATCAACATCTTAAACCAAGCTTAATAAA
261 CTCAATAAACTCACGCTCATAAGTAAATCGAATCATGATCAACATCTTAAACCAAGCTTAATAAA
7604291 CTCATGGTCATTAGTAAATCAATCATGCTCAACATGTCACGTCCCATTTTCGAGACATGACCAGC
326 CTCATGGTCATTAGTAAATCAATCATGCTCAACATGTCACGTCCCATTTTCGAGACATGACCAGC
*
7604356 TCATTGACCTATGTGGGTATGGCCCACTAGGCTTAGAAAGCCTTACACATATCATGTGTGAGCTG
391 TCATTAACCTATGTGGGTATGGCCCACTAGGCTTAGAAAGCCTTACACATATCATGTGTGAGCTG
7604421 GTCATCCACCATATCTATACATCAACACAATTATATAAACATTATCACACAATTATGGAACTTTT
456 GTCATCCACCATATCTATACATCAACACAATTATATAAACATTATCACACAATTATGGAACTTTT
7604486 CAACATAATGTGTGGATCATTATACATACATTCATATGTACATGCCATCACACAATCAT
521 CAACATAATGTGTGGATCATTATACATACATTCATATGTACATGCCATCACACAATCAT
7604545 GGAACTTCTC
Statistics
Matches: 567, Mismatches: 12, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
587 567 1.00
ACGTcount: A:0.35, C:0.22, G:0.12, T:0.31
Consensus pattern (587 bp):
GATTTGTTTCACACTTTTGAAAACTACTTACATAGTAGTATTTATTTACGTACTTATATGCTCTC
AAAACCCCTTTACAAATCCAACATTTCGAATCATGTTTCCATGGCACTTTAAATTAGCCAAGCTA
TCATTTAAATCATGCTCAATAGTAACTTAGATTATCAAAGCTAATGGCAATAAAACCATGTCTAG
TTCTAGCAATCGAAAACCATGCTTAATAGCAAATCAACTCATGCACAACAACACCTTAAACTAAG
CTCAATAAACTCACGCTCATAAGTAAATCGAATCATGATCAACATCTTAAACCAAGCTTAATAAA
CTCATGGTCATTAGTAAATCAATCATGCTCAACATGTCACGTCCCATTTTCGAGACATGACCAGC
TCATTAACCTATGTGGGTATGGCCCACTAGGCTTAGAAAGCCTTACACATATCATGTGTGAGCTG
GTCATCCACCATATCTATACATCAACACAATTATATAAACATTATCACACAATTATGGAACTTTT
CAACATAATGTGTGGATCATTATACATACATTCATATGTACATGCCATCACACAATCATAGTAGT
AT
Found at i:7605584 original size:35 final size:35
Alignment explanation
Indices: 7605531--7605773 Score: 204
Period size: 35 Copynumber: 6.9 Consensus size: 35
7605521 CAAGTATTTG
* * *
7605531 TGTGGTGTGATGCCTCACATTTGGCCCTTATCACA
1 TGTGGTATGAAGCCCCACATTTGGCCCTTATCACA
** ** **
7605566 TGTGGTAAAAAGCATCACATTTGGCTCGAGTATC-CA
1 TGTGGTATGAAGCCCCACATTTGGC-C-CTTATCACA
* * **
7605602 TGT-GTATGATGCCCCACATTTGGCTCTTATCATG
1 TGTGGTATGAAGCCCCACATTTGGCCCTTATCACA
* * *
7605636 TATGGTATGATGCCCTACATTTGGCCCTTATCACA
1 TGTGGTATGAAGCCCCACATTTGGCCCTTATCACA
* *
7605671 TGTGGTATGAAGCCCCATATTTGGCCCTTATCACG
1 TGTGGTATGAAGCCCCACATTTGGCCCTTATCACA
** * *
7605706 TGTATTATGAAGCCCCACATTTGGCCCAAATAT-TCA
1 TGTGGTATGAAGCCCCACATTTGGCCC--TTATCACA
* * *
7605742 TGTGGTATAAAGCCCCACATTTGACCTTTATC
1 TGTGGTATGAAGCCCCACATTTGGCCCTTATC
7605774 CCCGCGTGGT
Statistics
Matches: 162, Mismatches: 39, Indels: 14
0.75 0.18 0.07
Matches are distributed among these distances:
33 4 0.02
34 5 0.03
35 117 0.72
36 29 0.18
37 7 0.04
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.33
Consensus pattern (35 bp):
TGTGGTATGAAGCCCCACATTTGGCCCTTATCACA
Found at i:7605715 original size:105 final size:105
Alignment explanation
Indices: 7605533--7605730 Score: 249
Period size: 105 Copynumber: 1.9 Consensus size: 105
7605523 AGTATTTGTG
* *
7605533 TGGTGTGATGCCTCACATTTGGCCCTTATCACATGTGGTAAAAAGCATCACATTTGGCTCGAGTA
1 TGGTATGATGCCTCACATTTGGCCCTTATCACATGTGGTAAAAAGCACCACATTTGGCTCGAGTA
*
7605598 TCCATGTGTATGATGCCCCACATTTGGCTCTTATCATGTA
66 TCCATGTGTATGAAGCCCCACATTTGGCTCTTATCATGTA
** * * **
7605638 TGGTATGATGCC-CTACATTTGGCCCTTATCACATGTGGTATGAAGCCCCATATTTGGC-C-CTT
1 TGGTATGATGCCTC-ACATTTGGCCCTTATCACATGTGGTAAAAAGCACCACATTTGGCTCGAGT
* *
7605700 ATCACGTGTATTATGAAGCCCCACATTTGGC
65 ATC-CATGT-GTATGAAGCCCCACATTTGGC
7605731 CCAAATATTC
Statistics
Matches: 79, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
103 4 0.05
104 6 0.08
105 69 0.87
ACGTcount: A:0.22, C:0.24, G:0.21, T:0.33
Consensus pattern (105 bp):
TGGTATGATGCCTCACATTTGGCCCTTATCACATGTGGTAAAAAGCACCACATTTGGCTCGAGTA
TCCATGTGTATGAAGCCCCACATTTGGCTCTTATCATGTA
Found at i:7606180 original size:35 final size:35
Alignment explanation
Indices: 7606126--7606210 Score: 107
Period size: 35 Copynumber: 2.4 Consensus size: 35
7606116 TTCAACCTTT
* * *
7606126 TGGTATTCTTGCCCTCACATCGAGATATATTCAAG
1 TGGTATTCTTACCCCCACATCAAGATATATTCAAG
* *
7606161 TGGTACTCTTACCCCCACATCAAGATTTATTCAAG
1 TGGTATTCTTACCCCCACATCAAGATATATTCAAG
* *
7606196 CGATATTCTTACCCC
1 TGGTATTCTTACCCC
7606211 TATGATGGGC
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 42 1.00
ACGTcount: A:0.26, C:0.28, G:0.13, T:0.33
Consensus pattern (35 bp):
TGGTATTCTTACCCCCACATCAAGATATATTCAAG
Found at i:7635920 original size:2 final size:2
Alignment explanation
Indices: 7635913--7635950 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
7635903 TGTTGATGTT
7635913 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7635951 CTATGTCATA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7639248 original size:49 final size:49
Alignment explanation
Indices: 7639183--7639279 Score: 149
Period size: 49 Copynumber: 2.0 Consensus size: 49
7639173 CATCATAGTC
* * *
7639183 GGGTCATCATCATCATCGACTTATGCGCACTCTCTACTCGCACATAGCT
1 GGGTCATCATCATCATCGACTTATACGCACTCCCTACTCGAACATAGCT
* *
7639232 GGGTCATCATCATCATCGGCTTATACGCACTCCCTACTTGAACATAGC
1 GGGTCATCATCATCATCGACTTATACGCACTCCCTACTCGAACATAGC
7639280 CAGGTCAATA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.24, C:0.32, G:0.16, T:0.28
Consensus pattern (49 bp):
GGGTCATCATCATCATCGACTTATACGCACTCCCTACTCGAACATAGCT
Found at i:7639286 original size:49 final size:49
Alignment explanation
Indices: 7639184--7639295 Score: 145
Period size: 49 Copynumber: 2.3 Consensus size: 49
7639174 ATCATAGTCG
* * * **
7639184 GGTCATCATCATCATCGACTTATGCGCACTCTCTACTCGCACATAGCTG
1 GGTCATCATCATCATCGACTTATACGCACTCCCTACTCGAACATAGCCA
* *
7639233 GGTCATCATCATCATCGGCTTATACGCACTCCCTACTTGAACATAGCCA
1 GGTCATCATCATCATCGACTTATACGCACTCCCTACTCGAACATAGCCA
7639282 GGTCAAT-ATCATCA
1 GGTC-ATCATCATCA
7639296 CACAACATTA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
49 53 0.96
50 2 0.04
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.28
Consensus pattern (49 bp):
GGTCATCATCATCATCGACTTATACGCACTCCCTACTCGAACATAGCCA
Found at i:7642422 original size:69 final size:68
Alignment explanation
Indices: 7642334--7642498 Score: 240
Period size: 69 Copynumber: 2.4 Consensus size: 68
7642324 TTGGAGCCAT
* * *
7642334 CGTGTGCATCCCCCTACATCATGCACAAGCAATATCATCACCCACATTCCCATACCCTGTCATCA
1 CGTGTGCATCCCCC-ACATCATGCACAAGCAATATCATCACCAACACTCCCATACCCCGTCATCA
7642399 CCGG
65 CCGG
* *
7642403 CGTGTGCATCCCCTCACATCGTGCACAAGCAATATCATCATCAACACTCCCATACCCCGTCATCA
1 CGTGTGCATCCCC-CACATCATGCACAAGCAATATCATCACCAACACTCCCATACCCCGTCATCA
7642468 CCGG
65 CCGG
**
7642472 TATGTGCATCCCCCCACATCATGCACA
1 CGTGTGCAT-CCCCCACATCATGCACA
7642499 CGTACGGTTA
Statistics
Matches: 86, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
69 81 0.94
70 5 0.06
ACGTcount: A:0.26, C:0.41, G:0.12, T:0.21
Consensus pattern (68 bp):
CGTGTGCATCCCCCACATCATGCACAAGCAATATCATCACCAACACTCCCATACCCCGTCATCAC
CGG
Found at i:7642549 original size:2 final size:2
Alignment explanation
Indices: 7642542--7642578 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
7642532 TCAATGCACC
7642542 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7642579 CCAACATAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7651994 original size:61 final size:61
Alignment explanation
Indices: 7651839--7652019 Score: 269
Period size: 60 Copynumber: 3.0 Consensus size: 61
7651829 AGACATCATC
*
7651839 ACCTACTTGTGGGAACTACCCACGCCA-CCATATATAAATCGGGGCTTCAGGTCCCCC-TTT
1 ACCTACTTGTGGGATCTACCCACGCCACCCA-ATATAAATCGGGGCTTCAGGTCCCCCTTTT
* * *
7651899 ACCTACTTGTGGGATCTGCCCACGCCACCTAATATAAATCAGGGCTTCAGGTCCCCCTTTT
1 ACCTACTTGTGGGATCTACCCACGCCACCCAATATAAATCGGGGCTTCAGGTCCCCCTTTT
* * *
7651960 ACCTACTCGTGGGATCTACCAATGCCACCCAATATAAATCGGGGCTTCAGGT-CCCCTTTT
1 ACCTACTTGTGGGATCTACCCACGCCACCCAATATAAATCGGGGCTTCAGGTCCCCCTTTT
7652020 GCAATCAAAT
Statistics
Matches: 109, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
60 58 0.53
61 51 0.47
ACGTcount: A:0.23, C:0.33, G:0.18, T:0.27
Consensus pattern (61 bp):
ACCTACTTGTGGGATCTACCCACGCCACCCAATATAAATCGGGGCTTCAGGTCCCCCTTTT
Found at i:7652396 original size:2 final size:2
Alignment explanation
Indices: 7652383--7652412 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
7652373 AAGCATGTAG
*
7652383 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7652413 TTTATATTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:7652725 original size:18 final size:18
Alignment explanation
Indices: 7652683--7652725 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
7652673 CAGCCGACGC
*
7652683 TTCTCTTTCTCTTCTTTT
1 TTCTCTTTCTCTTCTTCT
*
7652701 TTTTCTTTCT-TTCTTCCT
1 TTCTCTTTCTCTTCTT-CT
7652719 TTCTCTT
1 TTCTCTT
7652726 CTTCCTTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 5 0.24
18 16 0.76
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (18 bp):
TTCTCTTTCTCTTCTTCT
Found at i:7652822 original size:31 final size:31
Alignment explanation
Indices: 7652784--7652852 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 31
7652774 GTTTTTTTCT
* *
7652784 TTCTTCTCCTCTGCCGCTGCTCTTTCTCTCC
1 TTCTTCTCCTCTACCGCTACTCTTTCTCTCC
*
7652815 TTCTTCTCCTCTATCGCTACTCTTTCTCTCC
1 TTCTTCTCCTCTACCGCTACTCTTTCTCTCC
*
7652846 TTTTTCT
1 TTCTTCT
7652853 TCTTTTTCTT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.03, C:0.41, G:0.06, T:0.51
Consensus pattern (31 bp):
TTCTTCTCCTCTACCGCTACTCTTTCTCTCC
Found at i:7654960 original size:20 final size:19
Alignment explanation
Indices: 7654935--7654973 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
7654925 CCCGATTTAC
7654935 CCTTTGAATTTTCTAGTTTT
1 CCTTTG-ATTTTCTAGTTTT
* *
7654955 CCTTTGTTTTTCTCGTTTT
1 CCTTTGATTTTCTAGTTTT
7654974 TTCCTTTCCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.08, C:0.18, G:0.10, T:0.64
Consensus pattern (19 bp):
CCTTTGATTTTCTAGTTTT
Found at i:7655812 original size:16 final size:16
Alignment explanation
Indices: 7655784--7655816 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7655774 CCCCTCACTC
7655784 TCTTCCTTCTCTTTCT
1 TCTTCCTTCTCTTTCT
7655800 TCTTCTCTT-TCTTTCT
1 TCTTC-CTTCTCTTTCT
7655816 T
1 T
7655817 ATCTTTTCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 13 0.81
17 3 0.19
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (16 bp):
TCTTCCTTCTCTTTCT
Found at i:7655815 original size:13 final size:13
Alignment explanation
Indices: 7655784--7655822 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
7655774 CCCCTCACTC
*
7655784 TCTTCCTTCTCTT
1 TCTTTCTTCTCTT
7655797 TC-TTCTTCTCTT
1 TCTTTCTTCTCTT
*
7655809 TCTTTCTTATCTT
1 TCTTTCTTCTCTT
7655822 T
1 T
7655823 TCTCCCTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
12 11 0.48
13 12 0.52
ACGTcount: A:0.03, C:0.31, G:0.00, T:0.67
Consensus pattern (13 bp):
TCTTTCTTCTCTT
Found at i:7660738 original size:42 final size:43
Alignment explanation
Indices: 7660661--7660766 Score: 101
Period size: 42 Copynumber: 2.5 Consensus size: 43
7660651 TGACCGAGTA
* * * *
7660661 GGAGTGTACATAAGCCGATGATTACCCGACTATGTG-TGAAT-G
1 GGAGTGCACATAAGCCGATGATGACCAGACCATGTGCT-AATGG
* *
7660703 GGAGTGCACATAAGTCGATGATGACCTAG-CCATGTGCTAGTGG
1 GGAGTGCACATAAGCCGATGATGACC-AGACCATGTGCTAATGG
* *
7660746 GGAGTGCACATGAGCTGATGA
1 GGAGTGCACATAAGCCGATGA
7660767 CGATGGGAGA
Statistics
Matches: 52, Mismatches: 9, Indels: 5
0.79 0.14 0.08
Matches are distributed among these distances:
42 31 0.60
43 21 0.40
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.24
Consensus pattern (43 bp):
GGAGTGCACATAAGCCGATGATGACCAGACCATGTGCTAATGG
Found at i:7660800 original size:2 final size:2
Alignment explanation
Indices: 7660793--7660819 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7660783 ATGATGATGA
7660793 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
7660820 CATGTATAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7661315 original size:19 final size:19
Alignment explanation
Indices: 7661279--7661315 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7661269 AGGTTTGGTG
*
7661279 AGAAACCCTCGGCCAGTTA
1 AGAAACCCTCAGCCAGTTA
*
7661298 AGAAACCCTCAGCTAGTT
1 AGAAACCCTCAGCCAGTT
7661316 GATAATTTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.32, C:0.30, G:0.19, T:0.19
Consensus pattern (19 bp):
AGAAACCCTCAGCCAGTTA
Found at i:7666418 original size:109 final size:108
Alignment explanation
Indices: 7666287--7666504 Score: 427
Period size: 109 Copynumber: 2.0 Consensus size: 108
7666277 AAATTGTTTA
7666287 TGTAGGATTCTATAAATATTGTTTTATAAGAAAATAGAATATTTTATTTAATATTTTTATTTAGT
1 TGTAGGATTCTATAAATATTGTTTTATAAGAAAATAGAATATTTTATTTAATATTTTTATTTAGT
7666352 TTGATTAGCCAAAATTTCATTTTAAACGAATTATTTAGATTAC
66 TTGATTAGCCAAAATTTCATTTTAAACGAATTATTTAGATTAC
7666395 TNGTAGGATTCTATAAATATTGTTTTATAAGAAAATAGAATATTTTATTTAATATTTTTATTTAG
1 T-GTAGGATTCTATAAATATTGTTTTATAAGAAAATAGAATATTTTATTTAATATTTTTATTTAG
7666460 TTTGATTAGCCAAAATTTCATTTTAAACGAATTATTTAGATTAC
65 TTTGATTAGCCAAAATTTCATTTTAAACGAATTATTTAGATTAC
7666504 T
1 T
7666505 AAAATTATTT
Statistics
Matches: 109, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
108 1 0.01
109 108 0.99
ACGTcount: A:0.37, C:0.06, G:0.10, T:0.47
Consensus pattern (108 bp):
TGTAGGATTCTATAAATATTGTTTTATAAGAAAATAGAATATTTTATTTAATATTTTTATTTAGT
TTGATTAGCCAAAATTTCATTTTAAACGAATTATTTAGATTAC
Found at i:7673015 original size:29 final size:29
Alignment explanation
Indices: 7672973--7673133 Score: 175
Period size: 29 Copynumber: 5.5 Consensus size: 29
7672963 CAACTTTAAC
7672973 ATGTTTGTCTTAATTTAGACAAGAAAACT
1 ATGTTTGTCTTAATTTAGACAAGAAAACT
*
7673002 -TGTTTGGTCTTAATTTAGATAAGAAAA-T
1 ATGTTT-GTCTTAATTTAGACAAGAAAACT
* * *
7673030 ATGTCTATCTTAATTTAAGACAAGAAAAAT
1 ATGTTTGTCTTAATTT-AGACAAGAAAACT
* *
7673060 ATTTTTTGTCTTAATCTAGACAAGAAAAC-
1 A-TGTTTGTCTTAATTTAGACAAGAAAACT
* * *
7673089 ATATTTGTCTCAATTTAGACAAGATAAAAT
1 ATGTTTGTCTTAATTTAGACAAGA-AAACT
*
7673119 ATTTTTGTCTTAATT
1 ATGTTTGTCTTAATT
7673134 AAAGACAATA
Statistics
Matches: 110, Mismatches: 15, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
28 35 0.32
29 38 0.35
30 26 0.24
31 11 0.10
ACGTcount: A:0.39, C:0.09, G:0.12, T:0.40
Consensus pattern (29 bp):
ATGTTTGTCTTAATTTAGACAAGAAAACT
Found at i:7673107 original size:28 final size:28
Alignment explanation
Indices: 7672970--7673133 Score: 152
Period size: 28 Copynumber: 5.6 Consensus size: 28
7672960 TGGCAACTTT
*
7672970 AACATGTTTGTCTTAATTTAGACAAGAA
1 AACATATTTGTCTTAATTTAGACAAGAA
* * *
7672998 AACTTGTTTGGTCTTAATTTAGATAAGAA
1 AACATATTT-GTCTTAATTTAGACAAGAA
* * * *
7673027 AATATGTCTATCTTAATTTAAGACAAGAA
1 AACATATTTGTCTTAATTT-AGACAAGAA
*
7673056 AA-ATATTTTTTGTCTTAATCTAGACAAGAA
1 AACATA---TTTGTCTTAATTTAGACAAGAA
*
7673086 AACATATTTGTCTCAATTTAGACAAGATA
1 AACATATTTGTCTTAATTTAGACAAGA-A
7673115 AA-ATATTTTTGTCTTAATT
1 AACATA--TTTGTCTTAATT
7673134 AAAGACAATA
Statistics
Matches: 113, Mismatches: 14, Indels: 16
0.79 0.10 0.11
Matches are distributed among these distances:
28 41 0.36
29 37 0.33
30 22 0.19
31 13 0.12
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.40
Consensus pattern (28 bp):
AACATATTTGTCTTAATTTAGACAAGAA
Found at i:7673141 original size:59 final size:56
Alignment explanation
Indices: 7672970--7673134 Score: 197
Period size: 59 Copynumber: 2.9 Consensus size: 56
7672960 TGGCAACTTT
* * *
7672970 AACATGTTTGTCTTAATTTAGACAAGAAAACT-TGTTTGGTCTTAATTTAGATAAGAA
1 AACATGTTTGTCTTAATTTAGACAAGAAAAATAT-TTTTGTCTTAA-TTAGACAAGAA
* * *
7673027 AATATGTCTATCTTAATTTAAGACAAGAAAAATATTTTTTGTCTTAATCTAGACAAGAA
1 AACATGTTTGTCTTAATTT-AGACAAGAAAAATA-TTTTTGTCTTAAT-TAGACAAGAA
* *
7673086 AACATATTTGTCTCAATTTAGACAAGATAAAATATTTTTGTCTTAATTA
1 AACATGTTTGTCTTAATTTAGACAAGA-AAAATATTTTTGTCTTAATTA
7673135 AAGACAATAG
Statistics
Matches: 92, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
57 18 0.20
58 34 0.37
59 39 0.42
60 1 0.01
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (56 bp):
AACATGTTTGTCTTAATTTAGACAAGAAAAATATTTTTGTCTTAATTAGACAAGAA
Found at i:7673307 original size:17 final size:17
Alignment explanation
Indices: 7673285--7673317 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
7673275 ATAATAATAA
7673285 AATAA-GAGTTATTATTC
1 AATAAGGAGTT-TTATTC
7673302 AATAAGGAGTTTTATT
1 AATAAGGAGTTTTATT
7673318 TTATTAAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.39, C:0.03, G:0.15, T:0.42
Consensus pattern (17 bp):
AATAAGGAGTTTTATTC
Found at i:7675738 original size:6 final size:6
Alignment explanation
Indices: 7675727--7675783 Score: 62
Period size: 6 Copynumber: 9.0 Consensus size: 6
7675717 TTCTTCCTTG
*
7675727 TTTTTC TTTTTC TTTTTC TTCTCTC TATTTT- TCTTTTC TTTTTC TTTCTTC
1 TTTTTC TTTTTC TTTTTC TT-TTTC T-TTTTC T-TTTTC TTTTTC TTT-TTC
7675778 TTTTTC
1 TTTTTC
7675784 CTTTACCGCT
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
6 30 0.68
7 13 0.30
8 1 0.02
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (6 bp):
TTTTTC
Found at i:7675759 original size:21 final size:19
Alignment explanation
Indices: 7675733--7675783 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
7675723 CTTGTTTTTC
7675733 TTTTTCTTTTTCTTCTCTCT
1 TTTTTCTTTTTCTT-TCTCT
*
7675753 ATTTTTC-TTTTCTTTTTCT
1 -TTTTTCTTTTTCTTTCTCT
*
7675772 TTCTTCTTTTTC
1 TTTTTCTTTTTC
7675784 CTTTACCGCT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 5 0.19
19 9 0.33
20 7 0.26
21 6 0.22
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTTTCTTTTTCTTTCTCT
Found at i:7675764 original size:26 final size:25
Alignment explanation
Indices: 7675710--7675783 Score: 89
Period size: 26 Copynumber: 3.0 Consensus size: 25
7675700 TACCTTTGTA
*
7675710 TTTTC-TTTTCTTCCTTGTTTTTCT
1 TTTTCTTTTTCTTCCTTATTTTTCT
7675734 TTTTCTTTTTCTTCTCTCTATTTTTC-
1 TTTTCTTTTTCTTC-CT-TATTTTTCT
* *
7675760 TTTTCTTTTTCTTTCTTCTTTTTC
1 TTTTCTTTTTCTTCCTTATTTTTC
7675784 CTTTACCGCT
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
24 12 0.27
25 10 0.23
26 15 0.34
27 7 0.16
ACGTcount: A:0.01, C:0.22, G:0.01, T:0.76
Consensus pattern (25 bp):
TTTTCTTTTTCTTCCTTATTTTTCT
Found at i:7679223 original size:19 final size:18
Alignment explanation
Indices: 7679201--7679243 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 18
7679191 TTAATATTTT
7679201 AATATTATTTTATTCATAA
1 AATATTATTTTATTC-TAA
*
7679220 AATAATATTTTATTCTAA
1 AATATTATTTTATTCTAA
7679238 AATATT
1 AATATT
7679244 CTTCTCACCC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 8 0.36
19 14 0.64
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (18 bp):
AATATTATTTTATTCTAA
Found at i:7681648 original size:20 final size:21
Alignment explanation
Indices: 7681614--7681653 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
7681604 TCCAAAGCAC
*
7681614 TATCTATCAATAGAT-AAGGT
1 TATCTATCAAGAGATGAAGGT
*
7681634 TATCTATCGAGAGATGAAGG
1 TATCTATCAAGAGATGAAGG
7681654 ACAAAATACT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.38, C:0.10, G:0.23, T:0.30
Consensus pattern (21 bp):
TATCTATCAAGAGATGAAGGT
Found at i:7686645 original size:46 final size:46
Alignment explanation
Indices: 7686593--7686701 Score: 173
Period size: 46 Copynumber: 2.4 Consensus size: 46
7686583 TGTGCGATGT
*
7686593 GGGAGTGCACATGAGCTAATGATGATGATATTGCATTTTGGGTGTA
1 GGGAGTGCACATGAGCTAATGATGATGATATTGCATTGTGGGTGTA
* * *
7686639 GGGAGTGCATATGAGCTGATGATGATGATATTGCATTGTGTGTGTA
1 GGGAGTGCACATGAGCTAATGATGATGATATTGCATTGTGGGTGTA
*
7686685 GGAAGTGCACATGAGCT
1 GGGAGTGCACATGAGCT
7686702 GAGTGTGGTG
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 57 1.00
ACGTcount: A:0.26, C:0.09, G:0.34, T:0.31
Consensus pattern (46 bp):
GGGAGTGCACATGAGCTAATGATGATGATATTGCATTGTGGGTGTA
Found at i:7687852 original size:269 final size:267
Alignment explanation
Indices: 7687374--7687897 Score: 1003
Period size: 269 Copynumber: 2.0 Consensus size: 267
7687364 GACTAAATTG
*
7687374 CATGATTATCGTAAGTGCATCATGTTTTCTAAAACATTCCTTGTCATTGCTTGTTCCCTTCTTAT
1 CATGATTATCGTAAGTGCATAATGTTTTCTAAAACATTCCTTGTCATTGCTTGTTCCCTTCTTAT
*
7687439 GGTCACTCACTAAGTTTATACTCACTCTTTTAAATTGCATGTTTTCAGATTTGTAGATAGTTGGG
66 GGTCACTCACTAAGTTTATACTCACTCTTTTAAATTGCATGTTTTCAGATTCGTAGATAGTTGGG
7687504 ACTTAGACTAAGGTGTCCACTTGCATTCACTCTTGGTAGGTATCATGGCATTCGATAGTCGTACC
131 ACTTAGACTAAGGTGTCCACTTGCATTCACTCTTGGTAGGTATCATGGCATTCGATAGTCGTACC
7687569 CTCACCAAAGTCACTCCGCTGGTCGTTAGAAGTCTTTTATATGAGTACATGTACATTAAACCTAA
196 CTCACCAAAGTCACTCCGCTGGTCGTTAGAAGTCTTTTATATGAGTACATGTACATTAAACCTAA
7687634 ATTTCTA
261 ATTTCTA
7687641 NCATGATTATCGTAAGTGCATAATGTTTTCTAAAACATTCCTTGTCATTGCTTGTTCCCTTCTTA
1 -CATGATTATCGTAAGTGCATAATGTTTTCTAAAACATTCCTTGTCATTGCTTGTTCCCTTCTTA
*
7687706 TGGTCACTCACTAAGTTTATTACTCACTCTTTTAAATTGCATTTTTTCAGATTCGTAGATAGTTG
65 TGGTCACTCACTAAGTTTA-TACTCACTCTTTTAAATTGCATGTTTTCAGATTCGTAGATAGTTG
7687771 GGACTTAGACTAAGGTGTCCACTTGCATTCACTCTTGGTAGGTATCATGGCATTCGATAGTCGTA
129 GGACTTAGACTAAGGTGTCCACTTGCATTCACTCTTGGTAGGTATCATGGCATTCGATAGTCGTA
7687836 CCCTCACCAAAGTCACTCCGCTGGTCGTTAGAAGTCTTTTATATGAGTACATGTACATTAAA
194 CCCTCACCAAAGTCACTCCGCTGGTCGTTAGAAGTCTTTTATATGAGTACATGTACATTAAA
7687898 TGTAAATTGC
Statistics
Matches: 252, Mismatches: 3, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
268 82 0.33
269 170 0.67
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (267 bp):
CATGATTATCGTAAGTGCATAATGTTTTCTAAAACATTCCTTGTCATTGCTTGTTCCCTTCTTAT
GGTCACTCACTAAGTTTATACTCACTCTTTTAAATTGCATGTTTTCAGATTCGTAGATAGTTGGG
ACTTAGACTAAGGTGTCCACTTGCATTCACTCTTGGTAGGTATCATGGCATTCGATAGTCGTACC
CTCACCAAAGTCACTCCGCTGGTCGTTAGAAGTCTTTTATATGAGTACATGTACATTAAACCTAA
ATTTCTA
Found at i:7689439 original size:31 final size:31
Alignment explanation
Indices: 7689383--7689457 Score: 82
Period size: 31 Copynumber: 2.4 Consensus size: 31
7689373 ACATTTTTTT
7689383 TTCTTTTCAATTTGGTCTTTCAACATTTTAA
1 TTCTTTTCAATTTGGTCTTTCAACATTTTAA
* **
7689414 TTCTTTT-AGATTTTGTCCTTT-AACATTTTCT
1 TTCTTTTCA-ATTTGGT-CTTTCAACATTTTAA
*
7689445 TTCTTTCCAATTT
1 TTCTTTTCAATTT
7689458 TATCCCTCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
30 1 0.03
31 31 0.84
32 5 0.14
ACGTcount: A:0.19, C:0.17, G:0.05, T:0.59
Consensus pattern (31 bp):
TTCTTTTCAATTTGGTCTTTCAACATTTTAA
Found at i:7689458 original size:31 final size:30
Alignment explanation
Indices: 7689366--7689458 Score: 80
Period size: 31 Copynumber: 3.0 Consensus size: 30
7689356 TGCTCATTAT
* * *
7689366 TCCTCTAACATTTTTTTTTCTTTTCAATTTGG
1 TCCTTTAACA-TTTTATTTC-TTTCAATTTTG
* *
7689398 T-CTTTCAACATTTTAATTCTTTTAGATTTTG
1 TCCTTT-AACATTTTATTTCTTTCA-ATTTTG
*
7689429 TCCTTTAACATTTTCTTTCTTTCCAATTTT
1 TCCTTTAACATTTTATTTCTTT-CAATTTT
7689459 ATCCCTCAAT
Statistics
Matches: 49, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
30 4 0.08
31 35 0.71
32 10 0.20
ACGTcount: A:0.18, C:0.18, G:0.04, T:0.59
Consensus pattern (30 bp):
TCCTTTAACATTTTATTTCTTTCAATTTTG
Found at i:7689489 original size:33 final size:33
Alignment explanation
Indices: 7689439--7689513 Score: 98
Period size: 33 Copynumber: 2.2 Consensus size: 33
7689429 TCCTTTAACA
* *
7689439 TTTTCTTTCTTTCCAATTTTATCC-CTCAATATT
1 TTTTTTTTCTTTCCAATTTAATCCTCT-AATATT
*
7689472 TTTTTTTTCTTTTCAATTTAATCCTCTAATATT
1 TTTTTTTTCTTTCCAATTTAATCCTCTAATATT
7689505 TTTTCTTTT
1 TTTT-TTTT
7689514 TCAATTTAGT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
33 31 0.84
34 6 0.16
ACGTcount: A:0.17, C:0.19, G:0.00, T:0.64
Consensus pattern (33 bp):
TTTTTTTTCTTTCCAATTTAATCCTCTAATATT
Found at i:7689695 original size:41 final size:41
Alignment explanation
Indices: 7689637--7689751 Score: 203
Period size: 41 Copynumber: 2.8 Consensus size: 41
7689627 CTTTGAAGTT
**
7689637 ACAGAACAAGGATATTAAGCATTATCCTTGGAACTTATAACC
1 ACAG-ACAAGGATATTAAGTTTTATCCTTGGAACTTATAACC
7689679 ACAGACAAGGATATTAAGTTTTATCCTTGGAACTTATAACC
1 ACAGACAAGGATATTAAGTTTTATCCTTGGAACTTATAACC
7689720 ACAGACAAGGATATTAAGTTTTATCCTTGGAA
1 ACAGACAAGGATATTAAGTTTTATCCTTGGAA
7689752 GTTTAAAACC
Statistics
Matches: 71, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
41 67 0.94
42 4 0.06
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.30
Consensus pattern (41 bp):
ACAGACAAGGATATTAAGTTTTATCCTTGGAACTTATAACC
Found at i:7692027 original size:9 final size:9
Alignment explanation
Indices: 7692010--7692049 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
7692000 TCATCTTTCC
7692010 CTCTCAACT
1 CTCTCAACT
*
7692019 CTCTGAACT
1 CTCTCAACT
*
7692028 ATCTCAACT
1 CTCTCAACT
*
7692037 CTGTCAACT
1 CTCTCAACT
7692046 CTCT
1 CTCT
7692050 GTTGAGCACC
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.23, C:0.38, G:0.05, T:0.35
Consensus pattern (9 bp):
CTCTCAACT
Found at i:7692084 original size:63 final size:63
Alignment explanation
Indices: 7692008--7692131 Score: 194
Period size: 63 Copynumber: 2.0 Consensus size: 63
7691998 GCTCATCTTT
* *
7692008 CCCTCTCAACTCTCTGAACTATCTCAACTCTGTCAACTCTCTGTTGAGCACCATCGTCATCAG
1 CCCTCTCAACTCTCTGAACTATATCAACTCTGTCAACTCTCTGTTGAGCACCATCATCATCAG
* * * *
7692071 CCCTCTGAACTCTCTGAACTATATGAGCTCTGTCAACTCTTTGTTGAGCACCATCATCATC
1 CCCTCTCAACTCTCTGAACTATATCAACTCTGTCAACTCTCTGTTGAGCACCATCATCATC
7692132 GGGCTGTGGT
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
63 55 1.00
ACGTcount: A:0.23, C:0.34, G:0.12, T:0.31
Consensus pattern (63 bp):
CCCTCTCAACTCTCTGAACTATATCAACTCTGTCAACTCTCTGTTGAGCACCATCATCATCAG
Found at i:7692521 original size:31 final size:31
Alignment explanation
Indices: 7692478--7692648 Score: 279
Period size: 31 Copynumber: 5.5 Consensus size: 31
7692468 GTGTCAGTGT
7692478 TGGCGTGTTACAACATTTTACGTTATATGCA
1 TGGCGTGTTACAACATTTTACGTTATATGCA
* *
7692509 TGGCATGTTACAACATTTTACGTTATCTGCA
1 TGGCGTGTTACAACATTTTACGTTATATGCA
7692540 TGGCGTGTTACAACATTTTACGTTATATGCA
1 TGGCGTGTTACAACATTTTACGTTATATGCA
* * *
7692571 TGGCGTTTTACAACAATTTATGTTATATGCA
1 TGGCGTGTTACAACATTTTACGTTATATGCA
*
7692602 TGGCCTGTTACAACATTTTACGTTATATGCA
1 TGGCGTGTTACAACATTTTACGTTATATGCA
*
7692633 TGGCATGTTACAACAT
1 TGGCGTGTTACAACAT
7692649 GACTGACAAA
Statistics
Matches: 128, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 128 1.00
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.39
Consensus pattern (31 bp):
TGGCGTGTTACAACATTTTACGTTATATGCA
Found at i:7696723 original size:117 final size:117
Alignment explanation
Indices: 7696517--7696906 Score: 629
Period size: 117 Copynumber: 3.3 Consensus size: 117
7696507 TGACATCTTG
* *
7696517 TGGTGACACGCTGAGTGGAAGCAGATAGTTGGCGTGACACGCTGAGTGCATGGAGATTTTTATGG
1 TGGTGACACACTGAGTGGAAGCAGATAGTTGGCGTGACACGCTGAGTGCATGGAGATTTCTATGG
7696582 TGACACGCTGACTTCTTGCAGTATTGTGGGGTGACACGACAATCCCCAATTA
66 TGACACGCTGACTTCTTGCAGTATTGTGGGGTGACACGACAATCCCCAATTA
* * *
7696634 TGGTGACACGCTGAGTGGAAGCAGATAATTGGCGTGACACGCTGAGTGCATGGAGATTTCTGTGG
1 TGGTGACACACTGAGTGGAAGCAGATAGTTGGCGTGACACGCTGAGTGCATGGAGATTTCTATGG
* *
7696699 TGACACACTGACTTCTTGCAGTATTGTGGGGTGACACGAC-ATGCCCCAATTG
66 TGACACGCTGACTTCTTGCAGTATTGTGGGGTGACACGACAAT-CCCCAATTA
* *
7696751 TGGTGACACACTGAGTGGAAGCAGATAGTTGGCGTGACACGCTGAGTGCATGCAGATTTCTTTGG
1 TGGTGACACACTGAGTGGAAGCAGATAGTTGGCGTGACACGCTGAGTGCATGGAGATTTCTATGG
* * **
7696816 TGACATGCTGACTTCTTGCAGTATTGTGGGGTGACACGGCACGCCCCAATTA
66 TGACACGCTGACTTCTTGCAGTATTGTGGGGTGACACGACAATCCCCAATTA
* *
7696868 TGGTGACACACTGAGTGGAACCAGATACTTGGCGTGACA
1 TGGTGACACACTGAGTGGAAGCAGATAGTTGGCGTGACA
7696907 TGTTGACTTG
Statistics
Matches: 254, Mismatches: 17, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
116 2 0.01
117 252 0.99
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.26
Consensus pattern (117 bp):
TGGTGACACACTGAGTGGAAGCAGATAGTTGGCGTGACACGCTGAGTGCATGGAGATTTCTATGG
TGACACGCTGACTTCTTGCAGTATTGTGGGGTGACACGACAATCCCCAATTA
Found at i:7696875 original size:86 final size:85
Alignment explanation
Indices: 7696784--7696963 Score: 191
Period size: 86 Copynumber: 2.1 Consensus size: 85
7696774 GATAGTTGGC
** * * * ***
7696784 GTGACACGCTGAGTGCATGCAGATTTCTTTG-GTGACATGCTGACTTCTTGCAGTATTGTGGGGT
1 GTGACACGCTGAGTGCAACCAGA-TACTTGGCGTGACATGCTGACTTCTTCCAGTATTCAAGGGT
* *
7696848 GACACGGCACGCCCCAATTATG
65 GACACGCCACGCCCCAA-TAGG
* * * * *
7696870 GTGACACACTGAGTGGAACCAGATACTTGGCGTGACATGTTGACTTGTTCCAGTTTTCAAGGGTG
1 GTGACACGCTGAGTGCAACCAGATACTTGGCGTGACATGCTGACTTCTTCCAGTATTCAAGGGTG
*
7696935 ACACGCCATGCCCCAATAGG
66 ACACGCCACGCCCCAATAGG
7696955 GTGACACGC
1 GTGACACGC
7696964 CACGTGGTTG
Statistics
Matches: 76, Mismatches: 17, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
85 16 0.21
86 60 0.79
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.26
Consensus pattern (85 bp):
GTGACACGCTGAGTGCAACCAGATACTTGGCGTGACATGCTGACTTCTTCCAGTATTCAAGGGTG
ACACGCCACGCCCCAATAGG
Found at i:7699877 original size:60 final size:59
Alignment explanation
Indices: 7699747--7699905 Score: 201
Period size: 60 Copynumber: 2.7 Consensus size: 59
7699737 ATAGGAGACA
* * * * * * * *
7699747 AAACAGAAAGTTTTTCGCTGCAGCGAGATTGAATCTCGATGCAGCGAATTATGACCTAG
1 AAACAGAAAGTTTCTCGCTACAGCGAGAATGAATTTTGCTACAGCGAATTATGACCCAG
* * *
7699806 AAACAGAAAGTTTCTCGCTACAGCGAGAATGAATTTTGCTATAGTGAAATTGTGACCCAG
1 AAACAGAAAGTTTCTCGCTACAGCGAGAATGAATTTTGCTACAGCG-AATTATGACCCAG
*
7699866 AAACAGAAAGTTTCTCGCTACAGCGAGTATGAATTTTGCT
1 AAACAGAAAGTTTCTCGCTACAGCGAGAATGAATTTTGCT
7699906 GCAACGAGAA
Statistics
Matches: 87, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
59 37 0.43
60 50 0.57
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (59 bp):
AAACAGAAAGTTTCTCGCTACAGCGAGAATGAATTTTGCTACAGCGAATTATGACCCAG
Found at i:7700263 original size:23 final size:23
Alignment explanation
Indices: 7700233--7700292 Score: 84
Period size: 23 Copynumber: 2.6 Consensus size: 23
7700223 TATACGTTTA
* * *
7700233 CCCATCATCATCATGCAGATCAT
1 CCCATCATCATCATACACACCAT
7700256 CCCATCATCATCATACACACCAT
1 CCCATCATCATCATACACACCAT
*
7700279 CACATCATCATCAT
1 CCCATCATCATCAT
7700293 CACTAGCTCA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.33, C:0.38, G:0.03, T:0.25
Consensus pattern (23 bp):
CCCATCATCATCATACACACCAT
Found at i:7708004 original size:3 final size:3
Alignment explanation
Indices: 7707996--7708054 Score: 54
Period size: 3 Copynumber: 20.3 Consensus size: 3
7707986 ACGTATACCT
* *
7707996 ATC ATC ATC ATGC A-C ATC ATC -CC ATC ATC ATC ATAC A-C ACC ATC
1 ATC ATC ATC AT-C ATC ATC ATC ATC ATC ATC ATC AT-C ATC ATC ATC
7708040 A-C ATC ATC ATC ATC A
1 ATC ATC ATC ATC ATC A
7708055 CCAGCTCATG
Statistics
Matches: 47, Mismatches: 3, Indels: 12
0.76 0.05 0.19
Matches are distributed among these distances:
2 7 0.15
3 36 0.77
4 4 0.09
ACGTcount: A:0.36, C:0.37, G:0.02, T:0.25
Consensus pattern (3 bp):
ATC
Found at i:7708026 original size:23 final size:23
Alignment explanation
Indices: 7707996--7708052 Score: 87
Period size: 23 Copynumber: 2.5 Consensus size: 23
7707986 ACGTATACCT
* * *
7707996 ATCATCATCATGCACATCATCCC
1 ATCATCATCATACACACCATCAC
7708019 ATCATCATCATACACACCATCAC
1 ATCATCATCATACACACCATCAC
7708042 ATCATCATCAT
1 ATCATCATCAT
7708053 CACCAGCTCA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.35, C:0.37, G:0.02, T:0.26
Consensus pattern (23 bp):
ATCATCATCATACACACCATCAC
Found at i:7708109 original size:43 final size:43
Alignment explanation
Indices: 7708062--7708180 Score: 150
Period size: 43 Copynumber: 2.8 Consensus size: 43
7708052 TCACCAGCTC
* ** * *
7708062 ATGCGCACTTCCTACTCGCACATTGCTGGGTCA-TCATCGAGTT
1 ATGCGCACTCCCTACTCGCACATAACCGGGTCATTC-TCGACTT
7708105 ATGCGCACTCCCTACTCGCACATAACCGGGTCATTCTCGACTT
1 ATGCGCACTCCCTACTCGCACATAACCGGGTCATTCTCGACTT
* **
7708148 ATGTGCACTCCCTACTCGCACATAGTCGGGTCA
1 ATGCGCACTCCCTACTCGCACATAACCGGGTCA
7708181 ATATAATTAC
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
43 65 0.97
44 2 0.03
ACGTcount: A:0.20, C:0.34, G:0.19, T:0.27
Consensus pattern (43 bp):
ATGCGCACTCCCTACTCGCACATAACCGGGTCATTCTCGACTT
Found at i:7711265 original size:31 final size:31
Alignment explanation
Indices: 7711230--7711308 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
7711220 GTTAACCCAT
*
7711230 AATGTGGTAACACGCCATGCATATAACGTAA
1 AATGTGGTAACACGCCATACATATAACGTAA
* *
7711261 AATGTGGTAAAATGCCATACATATAACGTAA
1 AATGTGGTAACACGCCATACATATAACGTAA
*
7711292 AATGTTGTAACACGCCA
1 AATGTGGTAACACGCCA
7711309 ATGTTGACAC
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.41, C:0.18, G:0.18, T:0.24
Consensus pattern (31 bp):
AATGTGGTAACACGCCATACATATAACGTAA
Found at i:7712127 original size:70 final size:70
Alignment explanation
Indices: 7712014--7712185 Score: 236
Period size: 70 Copynumber: 2.5 Consensus size: 70
7712004 CGTGTTACAA
* * * **
7712014 ATTCCCTCTATAGCGTGTCACAAACTCTGAAAGCTGGCGTGTCATAGATTCTTTCCATGGCATGT
1 ATTCCCTCTATAGCGTGTCACAAACTCTGAACGCTGGCGTGTCACAAATTCCCTCCATGGCATGT
7712079 CACAG
66 CACAG
* * * *
7712084 ATTCCCTCTATAGCATGTCACCAACTCTGAACGCTGGTGTGTCACAAATTCCCTCCATGGCGTGT
1 ATTCCCTCTATAGCGTGTCACAAACTCTGAACGCTGGCGTGTCACAAATTCCCTCCATGGCATGT
7712149 CACAG
66 CACAG
* * *
7712154 ATTCTCTCCATGGCGTGTCACAAACTCTGAAC
1 ATTCCCTCTATAGCGTGTCACAAACTCTGAAC
7712186 ATTGGCATGT
Statistics
Matches: 88, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
70 88 1.00
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (70 bp):
ATTCCCTCTATAGCGTGTCACAAACTCTGAACGCTGGCGTGTCACAAATTCCCTCCATGGCATGT
CACAG
Found at i:7712150 original size:23 final size:23
Alignment explanation
Indices: 7712122--7712177 Score: 94
Period size: 23 Copynumber: 2.4 Consensus size: 23
7712112 GAACGCTGGT
7712122 GTGTCACAAATTCCCTCCATGGC
1 GTGTCACAAATTCCCTCCATGGC
* *
7712145 GTGTCACAGATTCTCTCCATGGC
1 GTGTCACAAATTCCCTCCATGGC
7712168 GTGTCACAAA
1 GTGTCACAAA
7712178 CTCTGAACAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (23 bp):
GTGTCACAAATTCCCTCCATGGC
Found at i:7712259 original size:58 final size:58
Alignment explanation
Indices: 7712191--7712315 Score: 178
Period size: 58 Copynumber: 2.2 Consensus size: 58
7712181 TGAACATTGG
* * * * *
7712191 CATGTTACAAACTTTAAACCCTACCGTGTCACAGCCGTGTCACACATTCCAACCATGT
1 CATGTCACAAACTCTAAACCCTACCATGTCACAACCATGTCACACATTCCAACCATGT
* *
7712249 CATGTCACAAACTCTAAACCCTGCCATGTCACAACCATGTCACACATTCCCACCATGT
1 CATGTCACAAACTCTAAACCCTACCATGTCACAACCATGTCACACATTCCAACCATGT
*
7712307 CGTGTCACA
1 CATGTCACA
7712316 CATTCCCAAC
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.30, C:0.35, G:0.11, T:0.24
Consensus pattern (58 bp):
CATGTCACAAACTCTAAACCCTACCATGTCACAACCATGTCACACATTCCAACCATGT
Found at i:7712316 original size:23 final size:23
Alignment explanation
Indices: 7712286--7712338 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
7712276 GTCACAACCA
*
7712286 TGTCACACATTCCCACCATGTCG
1 TGTCACACATTCCCAACATGTCG
7712309 TGTCACACATTCCCAACATGTCG
1 TGTCACACATTCCCAACATGTCG
*
7712332 TTTCACA
1 TGTCACA
7712339 AACACTAAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.25, C:0.36, G:0.11, T:0.28
Consensus pattern (23 bp):
TGTCACACATTCCCAACATGTCG
Found at i:7715793 original size:17 final size:16
Alignment explanation
Indices: 7715771--7715804 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
7715761 GTCAAATATA
7715771 AATTTTTTAAAAAAAT
1 AATTTTTTAAAAAAAT
7715787 AATTTTTTAAAAAAAT
1 AATTTTTTAAAAAAAT
7715803 AA
1 AA
7715805 AATTTAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
AATTTTTTAAAAAAAT
Found at i:7715810 original size:15 final size:16
Alignment explanation
Indices: 7715776--7715816 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
7715766 ATATAAATTT
**
7715776 TTTAAAAAAATAATTT
1 TTTAAAAAAATAATAA
7715792 TTTAAAAAAATAA-AA
1 TTTAAAAAAATAATAA
7715807 TTTAAAAAAA
1 TTTAAAAAAA
7715817 AACTTCAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 10 0.43
16 13 0.57
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
TTTAAAAAAATAATAA
Found at i:7715911 original size:21 final size:20
Alignment explanation
Indices: 7715872--7715920 Score: 55
Period size: 22 Copynumber: 2.4 Consensus size: 20
7715862 CTTAAAAATA
* *
7715872 TAAAAAAATTTTATTTTTATT
1 TAAAAATATTTTATATTTA-T
7715893 GTAAAAATATTTT-TATTTAT
1 -TAAAAATATTTTATATTTAT
7715913 TAAAAATA
1 TAAAAATA
7715921 ATTATAATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 8 0.32
20 1 0.04
21 5 0.20
22 11 0.44
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (20 bp):
TAAAAATATTTTATATTTAT
Found at i:7716006 original size:11 final size:12
Alignment explanation
Indices: 7715977--7716004 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
7715967 TTAAAATTAT
7715977 AATTTATAAAAA
1 AATTTATAAAAA
7715989 AATTTATAAAAA
1 AATTTATAAAAA
7716001 AATT
1 AATT
7716005 ATCAAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
AATTTATAAAAA
Found at i:7728945 original size:43 final size:43
Alignment explanation
Indices: 7728858--7728988 Score: 139
Period size: 43 Copynumber: 3.1 Consensus size: 43
7728848 GTAATTATAT
*
7728858 TGACTCGACTATGTGCGAGTAAGG-GTGCGCATAAGC-CGAG-GA
1 TGACTCGACTATGTGCGAGTAGGGAGTGCGCATAA-CTCG-GTGA
*
7728900 TGACTCGATTATGTGCGAGTAGGGAGTGCGCATAACTCGGTGA
1 TGACTCGACTATGTGCGAGTAGGGAGTGCGCATAACTCGGTGA
* *
7728943 TGA-TCCAAGC-ATGTGCGAGTAGGGAGTGCGCATGAGCT-GGTGA
1 TGACT-CGA-CTATGTGCGAGTAGGGAGTGCGCAT-AACTCGGTGA
7728986 TGA
1 TGA
7728989 TGATGATGTG
Statistics
Matches: 78, Mismatches: 5, Indels: 11
0.83 0.05 0.12
Matches are distributed among these distances:
42 25 0.32
43 50 0.64
44 3 0.04
ACGTcount: A:0.24, C:0.17, G:0.37, T:0.22
Consensus pattern (43 bp):
TGACTCGACTATGTGCGAGTAGGGAGTGCGCATAACTCGGTGA
Found at i:7729019 original size:26 final size:23
Alignment explanation
Indices: 7728985--7729044 Score: 102
Period size: 23 Copynumber: 2.6 Consensus size: 23
7728975 TGAGCTGGTG
* *
7728985 ATGATGATGATGTGATGGTGTGT
1 ATGATGATGATGGGATGGTGTGC
7729008 ATGATGATGATGGGATGGTGTGC
1 ATGATGATGATGGGATGGTGTGC
7729031 ATGATGATGATGGG
1 ATGATGATGATGGG
7729045 TATACGTATA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.23, C:0.02, G:0.42, T:0.33
Consensus pattern (23 bp):
ATGATGATGATGGGATGGTGTGC
Found at i:7732515 original size:39 final size:39
Alignment explanation
Indices: 7732500--7732647 Score: 164
Period size: 39 Copynumber: 3.9 Consensus size: 39
7732490 CACATAGTTA
7732500 ATATCATCATTATGTGCACTCCCACACCGCACATGGCAT
1 ATATCATCATTATGTGCACTCCCACACCGCACATGGCAT
* *
7732539 ATATCATCATTATGTGCTCTCCCACACCGCACATGGAAT
1 ATATCATCATTATGTGCACTCCCACACCGCACATGGCAT
** * *
7732578 ATATCATCGGT-TGTGCTCTCCCACACTGCACA---C-T
1 ATATCATCATTATGTGCACTCCCACACCGCACATGGCAT
* *
7732612 ACTAGCA-CCTTCATGTGCACTCCCACACCGCACATG
1 A-TATCATCATT-ATGTGCACTCCCACACCGCACATG
7732648 CACGGTTATA
Statistics
Matches: 93, Mismatches: 11, Indels: 11
0.81 0.10 0.10
Matches are distributed among these distances:
34 4 0.04
35 4 0.04
36 19 0.20
38 20 0.22
39 46 0.49
ACGTcount: A:0.26, C:0.35, G:0.14, T:0.26
Consensus pattern (39 bp):
ATATCATCATTATGTGCACTCCCACACCGCACATGGCAT
Found at i:7733766 original size:4 final size:4
Alignment explanation
Indices: 7733750--7733795 Score: 60
Period size: 4 Copynumber: 11.8 Consensus size: 4
7733740 CAAGCTTTTC
*
7733750 TCTT TCTT T-TT TCTT TCTT TCTT TCCTT TC-T TCTT TCTT CCTT TCT
1 TCTT TCTT TCTT TCTT TCTT TCTT T-CTT TCTT TCTT TCTT TCTT TCT
7733796 CTCTCCTAGG
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
3 6 0.16
4 27 0.73
5 4 0.11
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (4 bp):
TCTT
Found at i:7733779 original size:24 final size:25
Alignment explanation
Indices: 7733746--7733800 Score: 76
Period size: 24 Copynumber: 2.2 Consensus size: 25
7733736 CCTCCAAGCT
* *
7733746 TTTCTCTTTCTTTTTTCTTTCTTTC
1 TTTCTCTTTCTTCTTTCTTCCTTTC
7733771 TTTC-CTTTCTTCTTTCTTCCTTTC
1 TTTCTCTTTCTTCTTTCTTCCTTTC
*
7733795 TCTCTC
1 TTTCTC
7733801 CTAGGGTATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 21 0.81
25 5 0.19
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (25 bp):
TTTCTCTTTCTTCTTTCTTCCTTTC
Found at i:7740704 original size:24 final size:24
Alignment explanation
Indices: 7740672--7740718 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
7740662 GAGACAAGAG
* *
7740672 GAAATTTTTGGAATAAAATAATAA
1 GAAAATTTTAGAATAAAATAATAA
7740696 GAAAATTTTAGAATAAAATAATA
1 GAAAATTTTAGAATAAAATAATA
7740719 TTTTATTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.11, T:0.32
Consensus pattern (24 bp):
GAAAATTTTAGAATAAAATAATAA
Found at i:7740723 original size:18 final size:19
Alignment explanation
Indices: 7740700--7740739 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
7740690 TAATAAGAAA
7740700 ATTTTA-GAATAAAATAAT
1 ATTTTATGAATAAAATAAT
* *
7740718 ATTTTATTAATAAAATATT
1 ATTTTATGAATAAAATAAT
7740737 ATT
1 ATT
7740740 AAAATATTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (19 bp):
ATTTTATGAATAAAATAAT
Found at i:7740736 original size:11 final size:11
Alignment explanation
Indices: 7740722--7740751 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
7740712 AATAATATTT
7740722 TATTAATAAAA
1 TATTAATAAAA
*
7740733 TATTATTAAAA
1 TATTAATAAAA
7740744 TATTAATA
1 TATTAATA
7740752 TTTTATTCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (11 bp):
TATTAATAAAA
Found at i:7747890 original size:11 final size:11
Alignment explanation
Indices: 7747874--7747898 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7747864 TCCTTATGCG
7747874 ATAAAATAATA
1 ATAAAATAATA
7747885 ATAAAATAATA
1 ATAAAATAATA
7747896 ATA
1 ATA
7747899 TTTTATTGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
ATAAAATAATA
Found at i:7748019 original size:18 final size:19
Alignment explanation
Indices: 7747996--7748031 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
7747986 AGAGGAAAAT
7747996 TTTTTA-ATAAAATAATAA
1 TTTTTAGATAAAATAATAA
7748014 TTTTTAGATAAAATAATA
1 TTTTTAGATAAAATAATA
7748032 TTAAAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (19 bp):
TTTTTAGATAAAATAATAA
Found at i:7750837 original size:20 final size:19
Alignment explanation
Indices: 7750809--7750849 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
7750799 GTTAAAGTAG
*
7750809 AATTTGTTGATACCTTGCAC
1 AATTAGTTGATACCTT-CAC
*
7750829 AATTAGTTGATATCTTCAC
1 AATTAGTTGATACCTTCAC
7750848 AA
1 AA
7750850 AACCATTTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.32, C:0.17, G:0.12, T:0.39
Consensus pattern (19 bp):
AATTAGTTGATACCTTCAC
Found at i:7752570 original size:2 final size:2
Alignment explanation
Indices: 7752563--7752598 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
7752553 TGAAAATTTT
7752563 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
7752599 TTTTCATGAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:7753312 original size:40 final size:38
Alignment explanation
Indices: 7753268--7753386 Score: 116
Period size: 40 Copynumber: 3.0 Consensus size: 38
7753258 AGGGAGATGG
*
7753268 ATGATGATAGTGCCTGTGTGCACGATGTGGGGGGATGTAC
1 ATGATGATAGTG-CT-TGTGCACGATGTGGGGGGATGCAC
** *
7753308 ATGATGGCACTGAC-TGTGCACGATGTGGGGGGATGCAC
1 ATGATGATAGTG-CTTGTGCACGATGTGGGGGGATGCAC
* *
7753346 ACGATGACTCCG-GCTATGTGCACGATGTGGGGGGATGCAC
1 ATGATGA-T-AGTGCT-TGTGCACGATGTGGGGGGATGCAC
7753386 A
1 A
7753387 GGAGCTGGGT
Statistics
Matches: 65, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
38 29 0.45
39 1 0.02
40 35 0.54
ACGTcount: A:0.21, C:0.18, G:0.39, T:0.23
Consensus pattern (38 bp):
ATGATGATAGTGCTTGTGCACGATGTGGGGGGATGCAC
Found at i:7753332 original size:38 final size:39
Alignment explanation
Indices: 7753284--7753386 Score: 136
Period size: 38 Copynumber: 2.6 Consensus size: 39
7753274 ATAGTGCCTG
* * * *
7753284 TGTGCACGATGTGGGGGGATGTACATGATGGCACTGAC-
1 TGTGCACGATGTGGGGGGATGCACACGATGACACCGACA
* *
7753322 TGTGCACGATGTGGGGGGATGCACACGATGACTCCGGCTA
1 TGTGCACGATGTGGGGGGATGCACACGATGACACCGAC-A
7753362 TGTGCACGATGTGGGGGGATGCACA
1 TGTGCACGATGTGGGGGGATGCACA
7753387 GGAGCTGGGT
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
38 32 0.56
40 25 0.44
ACGTcount: A:0.20, C:0.18, G:0.40, T:0.21
Consensus pattern (39 bp):
TGTGCACGATGTGGGGGGATGCACACGATGACACCGACA
Found at i:7757072 original size:29 final size:29
Alignment explanation
Indices: 7757030--7757086 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
7757020 GGATATTCAA
*
7757030 TATATCTTGCTTAGCTATTGTGGGTATTG
1 TATATCTTGCTTAGCTATTGTGGATATTG
*
7757059 TATATCTTGTTTAGCTATTGTGGATATT
1 TATATCTTGCTTAGCTATTGTGGATATT
7757087 ACAAATCTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.19, C:0.09, G:0.21, T:0.51
Consensus pattern (29 bp):
TATATCTTGCTTAGCTATTGTGGATATTG
Found at i:7757094 original size:29 final size:29
Alignment explanation
Indices: 7757033--7757095 Score: 81
Period size: 29 Copynumber: 2.2 Consensus size: 29
7757023 TATTCAATAT
* ** *
7757033 ATCTTGCTTAGCTATTGTGGGTATTGTAT
1 ATCTTGCTTAGCTATTGTGGATATTACAA
*
7757062 ATCTTGTTTAGCTATTGTGGATATTACAA
1 ATCTTGCTTAGCTATTGTGGATATTACAA
7757091 ATCTT
1 ATCTT
7757096 TAAAGAAAAC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.22, C:0.11, G:0.19, T:0.48
Consensus pattern (29 bp):
ATCTTGCTTAGCTATTGTGGATATTACAA
Found at i:7765622 original size:42 final size:42
Alignment explanation
Indices: 7765560--7765679 Score: 195
Period size: 42 Copynumber: 2.9 Consensus size: 42
7765550 ATGTGGACCC
** *
7765560 GGCTATGTGCGAGTATGAGTGCACATAAGTCGTTGCTTACAT
1 GGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCTTACAT
*
7765602 GGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCTTACCT
1 GGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCTTACAT
*
7765644 AGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGC
1 GGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGC
7765680 ATATGAGATG
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 73 1.00
ACGTcount: A:0.22, C:0.19, G:0.33, T:0.27
Consensus pattern (42 bp):
GGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCTTACAT
Found at i:7765729 original size:2 final size:2
Alignment explanation
Indices: 7765717--7765842 Score: 171
Period size: 2 Copynumber: 61.0 Consensus size: 2
7765707 TATATGATTG
*
7765717 AT AT CT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
7765759 AT AT AN GT AGT AGT AGT AGT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT A-T A-T A-T A-T AT AT AT AT AT AT AT AT AT AT AT AT
* *
7765803 AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AC AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7765843 GGTATATGGT
Statistics
Matches: 113, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
2 102 0.90
3 11 0.10
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.46
Consensus pattern (2 bp):
AT
Found at i:7770867 original size:19 final size:19
Alignment explanation
Indices: 7770773--7770870 Score: 56
Period size: 19 Copynumber: 5.1 Consensus size: 19
7770763 TCCCGGCTCA
7770773 TGTACATCCCCCCACATCG
1 TGTACATCCCCCCACATCG
* * ** *
7770792 TGCACATAGCCGGCACCATCA
1 TGTACAT-CCCCCCA-CATCG
*
7770813 TGTGCAT-CCCCCACATCG
1 TGTACATCCCCCCACATCG
* ****
7770831 TGCACAATCAGTGC-CATCG
1 TGTAC-ATCCCCCCACATCG
7770850 TGTACATCCCCCCACATCG
1 TGTACATCCCCCCACATCG
7770869 TG
1 TG
7770871 CACACGGGCA
Statistics
Matches: 53, Mismatches: 21, Indels: 10
0.63 0.25 0.12
Matches are distributed among these distances:
18 11 0.21
19 28 0.53
20 5 0.09
21 9 0.17
ACGTcount: A:0.22, C:0.41, G:0.16, T:0.20
Consensus pattern (19 bp):
TGTACATCCCCCCACATCG
Found at i:7776504 original size:35 final size:37
Alignment explanation
Indices: 7776460--7776535 Score: 120
Period size: 35 Copynumber: 2.1 Consensus size: 37
7776450 AGAATTATCC
7776460 TGTGCACTCCCACACCACACAAGGCA-ATATCATCA-
1 TGTGCACTCCCACACCACACAAGGCATATATCATCAG
* *
7776495 TGTGCACTCCCACATCACACATGGCATATATCATCAG
1 TGTGCACTCCCACACCACACAAGGCATATATCATCAG
7776532 TGTG
1 TGTG
7776536 TGTACTCACA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
35 24 0.65
36 9 0.24
37 4 0.11
ACGTcount: A:0.30, C:0.33, G:0.14, T:0.22
Consensus pattern (37 bp):
TGTGCACTCCCACACCACACAAGGCATATATCATCAG
Found at i:7776574 original size:73 final size:73
Alignment explanation
Indices: 7776492--7776661 Score: 259
Period size: 73 Copynumber: 2.3 Consensus size: 73
7776482 GGCAATATCA
* * *
7776492 TCATGTGCACTCCCACATCACACATGGCATATATCATCAGTGTGTGTACTCACACAGCACACCAC
1 TCATGTGCACTCCCACACCACACATGGCATATATCATCAATGTGTGCACTCACACAGCACACCAC
7776557 TATCACTG
66 TATCACTG
* * * *
7776565 TCATGTGCACTCCCACACCGCACATGGCATTTATCATCAATGTGTGCACTCACTCTGCACACCAC
1 TCATGTGCACTCCCACACCACACATGGCATATATCATCAATGTGTGCACTCACACAGCACACCAC
*
7776630 TATCATTG
66 TATCACTG
*
7776638 TCATGTGCACTCCCACACCGCACA
1 TCATGTGCACTCCCACACCACACA
7776662 CGCACGGCTA
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
73 89 1.00
ACGTcount: A:0.26, C:0.35, G:0.14, T:0.25
Consensus pattern (73 bp):
TCATGTGCACTCCCACACCACACATGGCATATATCATCAATGTGTGCACTCACACAGCACACCAC
TATCACTG
Found at i:7776582 original size:36 final size:36
Alignment explanation
Indices: 7776542--7776662 Score: 104
Period size: 36 Copynumber: 3.3 Consensus size: 36
7776532 TGTGTGTACT
*
7776542 CACACAGCACACCACTATCACTGTCATGTGCACTCC
1 CACACCGCACACCACTATCACTGTCATGTGCACTCC
* * ** *
7776578 CACACCGCACATGGCATTTATCATCAAT-GTGTGCACT--
1 CACACCGCACA--CCA-CTATCA-CTGTCATGTGCACTCC
* * *
7776615 CACTCTGCACACCACTATCATTGTCATGTGCACTCC
1 CACACCGCACACCACTATCACTGTCATGTGCACTCC
7776651 CACACCGCACAC
1 CACACCGCACAC
7776663 GCACGGCTAC
Statistics
Matches: 62, Mismatches: 16, Indels: 14
0.67 0.17 0.15
Matches are distributed among these distances:
33 1 0.02
34 13 0.21
35 2 0.03
36 20 0.32
37 9 0.15
38 2 0.03
39 13 0.21
40 2 0.03
ACGTcount: A:0.26, C:0.39, G:0.12, T:0.22
Consensus pattern (36 bp):
CACACCGCACACCACTATCACTGTCATGTGCACTCC
Found at i:7776611 original size:39 final size:38
Alignment explanation
Indices: 7776460--7776615 Score: 121
Period size: 39 Copynumber: 4.2 Consensus size: 38
7776450 AGAATTATCC
*
7776460 TGTGCACTCCCACACCACACAAGGCAATATCATC-A--
1 TGTGCACTCCCACACCACACATGGCAATATCATCAATG
* *
7776495 TGTGCACTCCCACATCACACATGGCATATATCATCAGTG
1 TGTGCACTCCCACACCACACATGGCA-ATATCATCAATG
* * * * ** *
7776534 TGTGTACTCACACAGCACAC----CACTATCA-CTGTCA
1 TGTGCACTCCCACACCACACATGGCAATATCATCAAT-G
* *
7776568 TGTGCACTCCCACACCGCACATGGCATTTATCATCAATG
1 TGTGCACTCCCACACCACACATGGCA-ATATCATCAATG
7776607 TGTGCACTC
1 TGTGCACTC
7776616 ACTCTGCACA
Statistics
Matches: 93, Mismatches: 17, Indels: 18
0.73 0.13 0.14
Matches are distributed among these distances:
33 3 0.03
34 21 0.23
35 26 0.28
36 8 0.09
38 2 0.02
39 31 0.33
40 2 0.02
ACGTcount: A:0.28, C:0.34, G:0.14, T:0.24
Consensus pattern (38 bp):
TGTGCACTCCCACACCACACATGGCAATATCATCAATG
Found at i:7781264 original size:27 final size:27
Alignment explanation
Indices: 7781234--7781287 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
7781224 CAACATTATG
*
7781234 GGGAGTTGAACCTTTTAACCGTTCCTT
1 GGGAGTTGAACCTTTCAACCGTTCCTT
7781261 GGGAGTTGAACCTTTCAACCGTTCCTT
1 GGGAGTTGAACCTTTCAACCGTTCCTT
7781288 CATACTTCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (27 bp):
GGGAGTTGAACCTTTCAACCGTTCCTT
Found at i:7784480 original size:58 final size:57
Alignment explanation
Indices: 7784389--7784504 Score: 196
Period size: 58 Copynumber: 2.0 Consensus size: 57
7784379 AGGGTCTCAT
* *
7784389 CTTTGCATGCATAGCATTTATTAAATCGTATAAAATAAATCTATCACATGCATACTA
1 CTTTGCATGCATAGCATTTATTAAATCGCATAAAATAAATCTATCACATGCAAACTA
*
7784446 CTTTGCATTGCATAGCATTTATTAAATTGCATAAAATAAATCTATCACATGCAAACTA
1 CTTTGCA-TGCATAGCATTTATTAAATCGCATAAAATAAATCTATCACATGCAAACTA
7784504 C
1 C
7784505 CTTGGATGAT
Statistics
Matches: 55, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
57 7 0.13
58 48 0.87
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.34
Consensus pattern (57 bp):
CTTTGCATGCATAGCATTTATTAAATCGCATAAAATAAATCTATCACATGCAAACTA
Found at i:7796708 original size:18 final size:19
Alignment explanation
Indices: 7796663--7796710 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
7796653 ATTAAAATTT
7796663 AATATTATTTTATTCATAA
1 AATATTATTTTATTCATAA
* *
7796682 ATTATTATTTTATT-TTAA
1 AATATTATTTTATTCATAA
*
7796700 AATACTATTTT
1 AATATTATTTT
7796711 CTACCATCAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 12 0.48
19 13 0.52
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (19 bp):
AATATTATTTTATTCATAA
Found at i:7798583 original size:2 final size:2
Alignment explanation
Indices: 7798576--7798607 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
7798566 TATGATGTTG
*
7798576 AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7798608 TATGTCATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7798639 original size:20 final size:19
Alignment explanation
Indices: 7798606--7798644 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
7798596 ATATATGTAT
*
7798606 ATTATGTCATAAATGGTAAC
1 ATTATGTCACAAAT-GTAAC
*
7798626 ATTATGTGACAAATGTAAC
1 ATTATGTCACAAATGTAAC
7798645 CGTGCATGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.41, C:0.10, G:0.15, T:0.33
Consensus pattern (19 bp):
ATTATGTCACAAATGTAAC
Found at i:7798835 original size:107 final size:108
Alignment explanation
Indices: 7798649--7798880 Score: 360
Period size: 107 Copynumber: 2.2 Consensus size: 108
7798639 TGTAACCGTG
* * * *
7798649 CATGAGCTGGGTGAGATGTGATGTCCGGCTATGTGCATGATGTGGTGGGATCAACATGAGCTGGG
1 CATGAGCTGGGTGAGATGTGATGTCCAGCTATGTGCACGATGTGGTGGCATCAACATAAGCTGGG
**
7798714 TGAGATGTGGTGTCCGGCTATGTGCAC-ATGTGGTGGGATGCA
66 TGAGATACGGTGTCCGGCTATGTGCACGATGTGGTGGGATGCA
* *
7798756 CATGAGCTGGGTGCGATGTGGTGTCCAGCTATGTGCACGATGTGGTGGCATGC-ACATAAGCTGG
1 CATGAGCTGGGTGAGATGTGATGTCCAGCTATGTGCACGATGTGGTGGCAT-CAACATAAGCTGG
7798820 GTGAGATACGGTGTCCGGCTATGTGCACGATGTGGTGGGATGCA
65 GTGAGATACGGTGTCCGGCTATGTGCACGATGTGGTGGGATGCA
*
7798864 CATGAACTGGGTGAGAT
1 CATGAGCTGGGTGAGAT
7798881 AAAATGTTTT
Statistics
Matches: 113, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
107 82 0.73
108 31 0.27
ACGTcount: A:0.19, C:0.16, G:0.39, T:0.26
Consensus pattern (108 bp):
CATGAGCTGGGTGAGATGTGATGTCCAGCTATGTGCACGATGTGGTGGCATCAACATAAGCTGGG
TGAGATACGGTGTCCGGCTATGTGCACGATGTGGTGGGATGCA
Found at i:7798881 original size:54 final size:54
Alignment explanation
Indices: 7798649--7798880 Score: 360
Period size: 54 Copynumber: 4.3 Consensus size: 54
7798639 TGTAACCGTG
* *
7798649 CATGAGCTGGGTGAGATGTGATGTCCGGCTATGTGCATGATGTGGTGGGAT-CAA
1 CATGAGCTGGGTGAGATGTGGTGTCCGGCTATGTGCACGATGTGGTGGGATGC-A
7798703 CATGAGCTGGGTGAGATGTGGTGTCCGGCTATGTGCAC-ATGTGGTGGGATGCA
1 CATGAGCTGGGTGAGATGTGGTGTCCGGCTATGTGCACGATGTGGTGGGATGCA
* * *
7798756 CATGAGCTGGGTGCGATGTGGTGTCCAGCTATGTGCACGATGTGGTGGCATGCA
1 CATGAGCTGGGTGAGATGTGGTGTCCGGCTATGTGCACGATGTGGTGGGATGCA
* **
7798810 CATAAGCTGGGTGAGATACGGTGTCCGGCTATGTGCACGATGTGGTGGGATGCA
1 CATGAGCTGGGTGAGATGTGGTGTCCGGCTATGTGCACGATGTGGTGGGATGCA
*
7798864 CATGAACTGGGTGAGAT
1 CATGAGCTGGGTGAGAT
7798881 AAAATGTTTT
Statistics
Matches: 163, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
53 49 0.30
54 114 0.70
ACGTcount: A:0.19, C:0.16, G:0.39, T:0.26
Consensus pattern (54 bp):
CATGAGCTGGGTGAGATGTGGTGTCCGGCTATGTGCACGATGTGGTGGGATGCA
Found at i:7802126 original size:18 final size:19
Alignment explanation
Indices: 7802087--7802126 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
7802077 GTCACATAAG
*
7802087 TATAAAGATATGTTGCAAA
1 TATAAAGATATCTTGCAAA
*
7802106 TATAAAGA-ATCTTGGAAA
1 TATAAAGATATCTTGCAAA
7802124 TAT
1 TAT
7802127 TGGTCTAAGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.47, C:0.05, G:0.15, T:0.33
Consensus pattern (19 bp):
TATAAAGATATCTTGCAAA
Found at i:7805815 original size:53 final size:54
Alignment explanation
Indices: 7805732--7805856 Score: 189
Period size: 53 Copynumber: 2.3 Consensus size: 54
7805722 TGTAACCGTG
* *
7805732 CATGAGTTGGGTGAGATGTGGTGTCCGACTATGTGCAC-ATGTGGTGAGATGCA
1 CATGAGCTGGGTGAGATATGGTGTCCGACTATGTGCACGATGTGGTGAGATGCA
* *
7805785 CATGAGCTGGGTGAGATATGGTGTCTGACTATGTGCACGATGTGGTGGGATGCA
1 CATGAGCTGGGTGAGATATGGTGTCCGACTATGTGCACGATGTGGTGAGATGCA
* *
7805839 CATGAGCTAGGTGCGATA
1 CATGAGCTGGGTGAGATA
7805857 AAATGTTTTC
Statistics
Matches: 65, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
53 35 0.54
54 30 0.46
ACGTcount: A:0.22, C:0.14, G:0.38, T:0.27
Consensus pattern (54 bp):
CATGAGCTGGGTGAGATATGGTGTCCGACTATGTGCACGATGTGGTGAGATGCA
Found at i:7807047 original size:28 final size:28
Alignment explanation
Indices: 7807015--7807077 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
7807005 TTGTTAATGA
* * *
7807015 CATTTTGATATGGTCTGTTGATGATAAT
1 CATTTTGAGATGATCTATTGATGATAAT
*
7807043 CATTTTAAGATGATCTATTGATGATAAT
1 CATTTTGAGATGATCTATTGATGATAAT
7807071 CATTTTG
1 CATTTTG
7807078 TTAAGAGATT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.29, C:0.08, G:0.17, T:0.46
Consensus pattern (28 bp):
CATTTTGAGATGATCTATTGATGATAAT
Found at i:7808613 original size:38 final size:39
Alignment explanation
Indices: 7808536--7808640 Score: 142
Period size: 38 Copynumber: 2.7 Consensus size: 39
7808526 CACACCCGAC
7808536 TCATGTACATCCCCCCACATCGTGCACATAGCGACGCCA
1 TCATGTACATCCCCCCACATCGTGCACATAGCGACGCCA
* * * *
7808575 TCATGTGCATCCCCCCACATTGTGCACA-ATC-AGTGCCA
1 TCATGTACATCCCCCCACATCGTGCACATAGCGA-CGCCA
*
7808613 TCGTGTACATCCCCCCACATCGTGCACA
1 TCATGTACATCCCCCCACATCGTGCACA
7808641 CGGGCACTAT
Statistics
Matches: 58, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
37 1 0.02
38 31 0.53
39 26 0.45
ACGTcount: A:0.24, C:0.40, G:0.15, T:0.21
Consensus pattern (39 bp):
TCATGTACATCCCCCCACATCGTGCACATAGCGACGCCA
Found at i:7812561 original size:2 final size:2
Alignment explanation
Indices: 7812509--7812552 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
7812499 NNNNNNNNNN
7812509 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7812551 TA
1 TA
7812553 CGCATATATC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7815011 original size:2 final size:2
Alignment explanation
Indices: 7815004--7815035 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7814994 TGGTCAAGAA
7815004 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7815036 TATCATTTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7817177 original size:37 final size:37
Alignment explanation
Indices: 7817136--7817212 Score: 136
Period size: 37 Copynumber: 2.1 Consensus size: 37
7817126 GTTGTGTGAG
*
7817136 GATGTTGAAGTGTGCGAGTAGGGAGTGCACACATGAT
1 GATGTTGAAATGTGCGAGTAGGGAGTGCACACATGAT
*
7817173 GATGTTGAAATGTGCGAGTAGGGAGTGCGCACATGAT
1 GATGTTGAAATGTGCGAGTAGGGAGTGCACACATGAT
7817210 GAT
1 GAT
7817213 AAATGCATAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.27, C:0.10, G:0.38, T:0.25
Consensus pattern (37 bp):
GATGTTGAAATGTGCGAGTAGGGAGTGCACACATGAT
Found at i:7819625 original size:16 final size:16
Alignment explanation
Indices: 7819585--7819626 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
7819575 GAAAGTTAAA
7819585 TTTAGATTTTGATTCT
1 TTTAGATTTTGATTCT
* *
7819601 TTTGGATTTTGATTTT
1 TTTAGATTTTGATTCT
*
7819617 TTTATATTTT
1 TTTAGATTTT
7819627 TATTGAATCC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.17, C:0.02, G:0.12, T:0.69
Consensus pattern (16 bp):
TTTAGATTTTGATTCT
Found at i:7819865 original size:12 final size:12
Alignment explanation
Indices: 7819848--7819884 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
7819838 TTTTTGATGA
7819848 ACATGTATCGAT
1 ACATGTATCGAT
7819860 ACATGT-TC-AT
1 ACATGTATCGAT
7819870 A-ATGTATCGAT
1 ACATGTATCGAT
7819881 ACAT
1 ACAT
7819885 TTTCCCCAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
9 4 0.18
10 5 0.23
11 5 0.23
12 8 0.36
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (12 bp):
ACATGTATCGAT
Found at i:7821013 original size:68 final size:68
Alignment explanation
Indices: 7820941--7821117 Score: 189
Period size: 68 Copynumber: 2.6 Consensus size: 68
7820931 AAGATTGTTT
* * * * *
7820941 ATATGATATAGATTCCATATACCATATGATG-TGATTAAGTATGCATGATTATTG-TCATGAGAA
1 ATATGATGTAGATTCCATATACCATATGA-GATGATTAAGCAAGCATGATAAATGCT-ATGAGAA
7821004 TATGC
64 TATGC
* * *
7821009 ATATGATGTATG-TTCCATATACTACATGAGATGATTAAGCAAGCATGATAAATGCTATGAGATT
1 ATATGATGTA-GATTCCATATACCATATGAGATGATTAAGCAAGCATGATAAATGCTATGAGAAT
*
7821073 ATGT
65 ATGC
* * * *
7821077 ATATGTTGTAAATTCCATATACCTTATGAGATGAGTAAGCA
1 ATATGATGTAGATTCCATATACCATATGAGATGATTAAGCA
7821118 TGTATGTGAA
Statistics
Matches: 90, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
67 1 0.01
68 87 0.97
69 2 0.02
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.35
Consensus pattern (68 bp):
ATATGATGTAGATTCCATATACCATATGAGATGATTAAGCAAGCATGATAAATGCTATGAGAATA
TGC
Found at i:7823067 original size:42 final size:42
Alignment explanation
Indices: 7823007--7823088 Score: 119
Period size: 42 Copynumber: 2.0 Consensus size: 42
7822997 NNNNNNNNNN
* * * *
7823007 ACCCGGCTATGTGTGAGTGGGAGTGCACATAAGTCGTTGCTG
1 ACCCGGCTATATGCGAGTGGGAGTACACATAAGCCGTTGCTG
*
7823049 ACCCGGCTATATGCGAGTGGGAGTACGCATAAGCCGTTGC
1 ACCCGGCTATATGCGAGTGGGAGTACACATAAGCCGTTGC
7823089 ATATGAGATG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.21, C:0.22, G:0.34, T:0.23
Consensus pattern (42 bp):
ACCCGGCTATATGCGAGTGGGAGTACACATAAGCCGTTGCTG
Found at i:7827241 original size:49 final size:49
Alignment explanation
Indices: 7827188--7827288 Score: 175
Period size: 49 Copynumber: 2.1 Consensus size: 49
7827178 GTGATAATAT
*
7827188 TGACCTAGCTATGTGCGAGTAGGGAGTGCGCATAAGCCGATGATGATGA
1 TGACCTAGCTATGTGCGAGTAAGGAGTGCGCATAAGCCGATGATGATGA
* *
7827237 TGACCTGGTTATGTGCGAGTAAGGAGTGCGCATAAGCCGATGATGATGA
1 TGACCTAGCTATGTGCGAGTAAGGAGTGCGCATAAGCCGATGATGATGA
7827286 TGA
1 TGA
7827289 TGACCCAGCT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.27, C:0.15, G:0.35, T:0.24
Consensus pattern (49 bp):
TGACCTAGCTATGTGCGAGTAAGGAGTGCGCATAAGCCGATGATGATGA
Found at i:7829091 original size:72 final size:72
Alignment explanation
Indices: 7828982--7829131 Score: 239
Period size: 72 Copynumber: 2.1 Consensus size: 72
7828972 GATCAATGCA
* * * *
7828982 TTAAG-ATGAGTCCATTATCCATCAAGATTTTGGTTCTACCATTAGTAAATACATAAGTGTGAGA
1 TTAAGTATGAGTCCAATATACATCAAGATTTTGATTCTACCATAAGTAAATACATAAGTGTGAGA
7829046 TCCAGAT
66 TCCAGAT
*
7829053 TTAAGTATGAGTCCAATATACATCAAGATTTTGATTCTACCATAAGTAAATGCATAAGTGTGAGA
1 TTAAGTATGAGTCCAATATACATCAAGATTTTGATTCTACCATAAGTAAATACATAAGTGTGAGA
*
7829118 TCCATAT
66 TCCAGAT
7829125 TTAAGTA
1 TTAAGTA
7829132 ACGCTTAAAC
Statistics
Matches: 72, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
71 5 0.07
72 67 0.93
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.34
Consensus pattern (72 bp):
TTAAGTATGAGTCCAATATACATCAAGATTTTGATTCTACCATAAGTAAATACATAAGTGTGAGA
TCCAGAT
Found at i:7829600 original size:21 final size:22
Alignment explanation
Indices: 7829576--7829640 Score: 80
Period size: 21 Copynumber: 3.0 Consensus size: 22
7829566 AAAAAGTTTT
7829576 AAAACT-ATTCAAATAACTTCA
1 AAAACTCATTCAAATAACTTCA
* * *
7829597 AAAACTCATTCCAACAGCTTCA
1 AAAACTCATTCAAATAACTTCA
*
7829619 AAAA-TCATTCAAATAAGTTCA
1 AAAACTCATTCAAATAACTTCA
7829640 A
1 A
7829641 TGATCATTCA
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
21 20 0.56
22 16 0.44
ACGTcount: A:0.49, C:0.22, G:0.03, T:0.26
Consensus pattern (22 bp):
AAAACTCATTCAAATAACTTCA
Found at i:7829783 original size:21 final size:21
Alignment explanation
Indices: 7829754--7829820 Score: 80
Period size: 21 Copynumber: 3.2 Consensus size: 21
7829744 AACACATTTA
* * *
7829754 CATTTAAACAACTTTAAAAAT
1 CATTCAAACAAGTTTAAAGAT
* *
7829775 CATTCAAACAAGTTCAAGGAT
1 CATTCAAACAAGTTTAAAGAT
*
7829796 CACTCAAACAAGTTTAAAGAT
1 CATTCAAACAAGTTTAAAGAT
7829817 CATT
1 CATT
7829821 AAAGCAATTT
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.46, C:0.18, G:0.07, T:0.28
Consensus pattern (21 bp):
CATTCAAACAAGTTTAAAGAT
Found at i:7831354 original size:17 final size:19
Alignment explanation
Indices: 7831327--7831361 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
7831317 AGGACATCAA
7831327 AGAGTGAAGAAA-AAAAAG
1 AGAGTGAAGAAAGAAAAAG
7831345 AGAG-GAAGAAAGAAAAA
1 AGAGTGAAGAAAGAAAAA
7831362 AAGAAAATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.69, C:0.00, G:0.29, T:0.03
Consensus pattern (19 bp):
AGAGTGAAGAAAGAAAAAG
Found at i:7831704 original size:40 final size:38
Alignment explanation
Indices: 7831660--7831783 Score: 108
Period size: 40 Copynumber: 3.2 Consensus size: 38
7831650 AAGGTAGAAG
7831660 GGTTGTTCTTTAACCTTAAAAATGCAGAGACTTTGTGAAA
1 GGTTGTTCTTTAACCTT-AAAATGCAGAGACTTTGT-AAA
** * * *
7831700 GGTTGTGT-TGCAAGCTTAAAATGGTAAAGACTTTGTCAAA
1 GGTTGT-TCTTTAACCTTAAAAT-GCAGAGACTTTGT-AAA
* * *
7831740 TGTTGTTCTTTAACCTTGAAAATGCAGTGACGTTGT-AA
1 GGTTGTTCTTTAACCTT-AAAATGCAGAGACTTTGTAAA
7831778 GGTTGT
1 GGTTGT
7831784 GCTTACTCCT
Statistics
Matches: 65, Mismatches: 15, Indels: 10
0.72 0.17 0.11
Matches are distributed among these distances:
38 7 0.11
39 6 0.09
40 46 0.71
41 6 0.09
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.36
Consensus pattern (38 bp):
GGTTGTTCTTTAACCTTAAAATGCAGAGACTTTGTAAA
Found at i:7831799 original size:40 final size:40
Alignment explanation
Indices: 7831754--7831848 Score: 120
Period size: 40 Copynumber: 2.4 Consensus size: 40
7831744 GTTCTTTAAC
* * * *
7831754 CTTGAAAATGCAGTGACGTTGTAAGGTTGTGCTT-ACTCCT
1 CTTGAAAAGGCAATGACATTATAAGGTTGTGCTTGA-TCCT
*
7831794 CTTGAAAAGGCAATGACATTATGAGGTTGTGCTTGATCCT
1 CTTGAAAAGGCAATGACATTATAAGGTTGTGCTTGATCCT
*
7831834 CTCGAAAAGGCAATG
1 CTTGAAAAGGCAATG
7831849 TTTATGAGGC
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
40 47 0.98
41 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (40 bp):
CTTGAAAAGGCAATGACATTATAAGGTTGTGCTTGATCCT
Found at i:7831865 original size:38 final size:39
Alignment explanation
Indices: 7831790--7831871 Score: 103
Period size: 38 Copynumber: 2.1 Consensus size: 39
7831780 TTGTGCTTAC
* * *
7831790 TCCTCTTGAAAAGGCAATGACATTATGAGGTTGTGCTTGA
1 TCCTCTCGAAAAGGCAATGA-ATTATGAGGCTATGCTTGA
* *
7831830 TCCTCTCGAAAAGGCAATG-TTTATGAGGCTATGCTTGT
1 TCCTCTCGAAAAGGCAATGAATTATGAGGCTATGCTTGA
7831868 TCCT
1 TCCT
7831872 TAAAAGGCAG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
38 19 0.51
40 18 0.49
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.34
Consensus pattern (39 bp):
TCCTCTCGAAAAGGCAATGAATTATGAGGCTATGCTTGA
Found at i:7834449 original size:12 final size:12
Alignment explanation
Indices: 7834434--7834463 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
7834424 TTCCAGTAGC
7834434 TTTTCTTCTTCT
1 TTTTCTTCTTCT
7834446 TTTTCTTCTTCT
1 TTTTCTTCTTCT
*
7834458 TCTTCT
1 TTTTCT
7834464 CTTTCATGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (12 bp):
TTTTCTTCTTCT
Found at i:7834624 original size:24 final size:24
Alignment explanation
Indices: 7834587--7834645 Score: 100
Period size: 24 Copynumber: 2.5 Consensus size: 24
7834577 TCTTCCATTC
**
7834587 TCTCACTTTAAAACCTTTAAAAAA
1 TCTCACTTCCAAACCTTTAAAAAA
7834611 TCTCACTTCCAAACCTTTAAAAAA
1 TCTCACTTCCAAACCTTTAAAAAA
7834635 TCTCACTTCCA
1 TCTCACTTCCA
7834646 TACTCTCTCT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.39, C:0.29, G:0.00, T:0.32
Consensus pattern (24 bp):
TCTCACTTCCAAACCTTTAAAAAA
Found at i:7842127 original size:35 final size:35
Alignment explanation
Indices: 7842050--7842135 Score: 100
Period size: 35 Copynumber: 2.4 Consensus size: 35
7842040 AAGCCGTTGG
* * *
7842050 GCAAAGAAACAAATCATGCACATGCCGAAGCAATGG
1 GCAAAG-AACAAATCATGCACATGCCAAAGCAACGA
* * *
7842086 GCAAAGAACAGATCATGCACGTGCCAAAGTAACGA
1 GCAAAGAACAAATCATGCACATGCCAAAGCAACGA
*
7842121 GTAAAGAACAAATCA
1 GCAAAGAACAAATCA
7842136 CGCATAAAGC
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
35 36 0.86
36 6 0.14
ACGTcount: A:0.47, C:0.21, G:0.21, T:0.12
Consensus pattern (35 bp):
GCAAAGAACAAATCATGCACATGCCAAAGCAACGA
Found at i:7842976 original size:2 final size:2
Alignment explanation
Indices: 7842969--7842993 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7842959 CTTTAGGCAA
7842969 AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC A
7842994 TATACATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:7851552 original size:6 final size:6
Alignment explanation
Indices: 7851544--7851583 Score: 71
Period size: 6 Copynumber: 6.7 Consensus size: 6
7851534 TTTCTATTAT
*
7851544 ATATAT ATATAG ATATAG ATATAG ATATAG ATATAG ATAT
1 ATATAG ATATAG ATATAG ATATAG ATATAG ATATAG ATAT
7851584 GTGTGTGTGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38
Consensus pattern (6 bp):
ATATAG
Found at i:7853256 original size:79 final size:79
Alignment explanation
Indices: 7853102--7853257 Score: 188
Period size: 79 Copynumber: 2.0 Consensus size: 79
7853092 AAGGTAGAGG
* * *
7853102 GGTTGTGCTCTAACCTTACAAAGGCAGAGACTTTGTGAAAGGTTTGCTGTAACTTTAAAAAGGAA
1 GGTTGTGCTCTAACCTTACAAAGGCAAAGACTTTGTGAAAAGTTTGCTGTAACCTTAAAAAGGAA
*
7853167 AAGACTTTGTGAAA
66 AAGACATTGTGAAA
* * * * * *
7853181 GGTTGTGCTTTAACTTTA-AAAGGTAAAGACTTTGTGAAAAGTTGTGCTTTAACCTTGAAAAGGC
1 GGTTGTGCTCTAACCTTACAAAGGCAAAGACTTTGTGAAAAGTT-TGCTGTAACCTTAAAAAGGA
**
7853245 AGTGACATTGTGA
65 AAAGACATTGTGA
7853258 GGTTATGCTT
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
78 22 0.34
79 42 0.66
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.31
Consensus pattern (79 bp):
GGTTGTGCTCTAACCTTACAAAGGCAAAGACTTTGTGAAAAGTTTGCTGTAACCTTAAAAAGGAA
AAGACATTGTGAAA
Found at i:7853257 original size:40 final size:39
Alignment explanation
Indices: 7853102--7853245 Score: 182
Period size: 39 Copynumber: 3.6 Consensus size: 39
7853092 AAGGTAGAGG
* *
7853102 GGTTGTGCTCTAACCTTACAAAGGCAGAGACTTTGTGAAA
1 GGTTGTGCTTTAACCTTA-AAAGGCAAAGACTTTGTGAAA
* * *
7853142 GGTT-TGCTGTAACTTTAAAAAGGAAAAGACTTTGTGAAA
1 GGTTGTGCTTTAACCTT-AAAAGGCAAAGACTTTGTGAAA
* *
7853181 GGTTGTGCTTTAACTTTAAAAGGTAAAGACTTTGTGAAA
1 GGTTGTGCTTTAACCTTAAAAGGCAAAGACTTTGTGAAA
*
7853220 AGTTGTGCTTTAACCTTGAAAAGGCA
1 GGTTGTGCTTTAACCTT-AAAAGGCA
7853246 GTGACATTGT
Statistics
Matches: 92, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
39 69 0.75
40 23 0.25
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.31
Consensus pattern (39 bp):
GGTTGTGCTTTAACCTTAAAAGGCAAAGACTTTGTGAAA
Done.