Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr4
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 31929104
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 1434590 characters in sequence are not A, C, G, or T
File 44 of 82
Found at i:16265833 original size:21 final size:21
Alignment explanation
Indices: 16265804--16265869 Score: 53
Period size: 21 Copynumber: 3.2 Consensus size: 21
16265794 CTGATCTATT
*
16265804 GATACATTGACTCCATGTATC
1 GATACATTGACTCCATATATC
* * *
16265825 GATAGATTGTC-CCTTATATC
1 GATACATTGACTCCATATATC
* * * *
16265845 GATATATTGCCTCAATCTATC
1 GATACATTGACTCCATATATC
16265866 GATA
1 GATA
16265870 AATACAAAGT
Statistics
Matches: 35, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
20 16 0.46
21 19 0.54
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (21 bp):
GATACATTGACTCCATATATC
Found at i:16266027 original size:15 final size:15
Alignment explanation
Indices: 16266007--16266036 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
16265997 AGACTATTAT
16266007 TAATCAATAGTCAAA
1 TAATCAATAGTCAAA
*
16266022 TAATCAATATTCAAA
1 TAATCAATAGTCAAA
16266037 CATCATATAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.53, C:0.13, G:0.03, T:0.30
Consensus pattern (15 bp):
TAATCAATAGTCAAA
Found at i:16267455 original size:20 final size:21
Alignment explanation
Indices: 16267414--16267462 Score: 73
Period size: 20 Copynumber: 2.4 Consensus size: 21
16267404 GAGTCCATTT
16267414 TATCAATAAATCAGACCTATC
1 TATCAATAAATCAGACCTATC
**
16267435 TATCAATAAATTTGA-CTATC
1 TATCAATAAATCAGACCTATC
16267455 TATCAATA
1 TATCAATA
16267463 GATTGGCTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 13 0.50
21 13 0.50
ACGTcount: A:0.43, C:0.18, G:0.04, T:0.35
Consensus pattern (21 bp):
TATCAATAAATCAGACCTATC
Found at i:16269979 original size:5 final size:5
Alignment explanation
Indices: 16269965--16270002 Score: 58
Period size: 5 Copynumber: 7.6 Consensus size: 5
16269955 CCACGCCTAC
* *
16269965 TCCCA ACCCA TCCCA TCCCA TCCCA TCCCA CCCCA TCC
1 TCCCA TCCCA TCCCA TCCCA TCCCA TCCCA TCCCA TCC
16270003 TTCAATCAGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.21, C:0.63, G:0.00, T:0.16
Consensus pattern (5 bp):
TCCCA
Found at i:16271229 original size:24 final size:24
Alignment explanation
Indices: 16271191--16271259 Score: 108
Period size: 24 Copynumber: 3.0 Consensus size: 24
16271181 TTATTTAAAA
*
16271191 AAATT-ATTTT-T-TATTTATATT
1 AAATTAATTTTATGTATTTTTATT
16271212 AAATTAATTTTATGTATTTTTATT
1 AAATTAATTTTATGTATTTTTATT
16271236 AAATTAATTTTATGTATTTTTATT
1 AAATTAATTTTATGTATTTTTATT
16271260 TTTAATTAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
21 5 0.11
22 5 0.11
23 1 0.02
24 33 0.75
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (24 bp):
AAATTAATTTTATGTATTTTTATT
Found at i:16271234 original size:30 final size:29
Alignment explanation
Indices: 16271198--16271280 Score: 86
Period size: 24 Copynumber: 2.9 Consensus size: 29
16271188 AAAAAATTAT
16271198 TTTTTATTTATATTAAATTAATTTTATGTA
1 TTTTTATTT-TATTAAATTAATTTTATGTA
16271228 ----T-TTTTATTAAATTAATTTTATGTA
1 TTTTTATTTTATTAAATTAATTTTATGTA
*
16271252 TTTTTATTTTTAATTAAATAAAATTTTAT
1 TTTTTA-TTTT-ATTAAAT-TAATTTTAT
16271281 AATTAACAGT
Statistics
Matches: 44, Mismatches: 1, Indels: 14
0.75 0.02 0.24
Matches are distributed among these distances:
24 20 0.45
25 3 0.07
26 1 0.02
28 1 0.02
30 4 0.09
31 7 0.16
32 8 0.18
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (29 bp):
TTTTTATTTTATTAAATTAATTTTATGTA
Found at i:16271511 original size:26 final size:25
Alignment explanation
Indices: 16271478--16271537 Score: 86
Period size: 26 Copynumber: 2.4 Consensus size: 25
16271468 TATTATTTAT
16271478 AAAAAATTATTTGATTGGAA-ATAAA
1 AAAAAATTATTTGATT-GAATATAAA
*
16271503 AATAAAATTATTTGATTGAATATAAT
1 AA-AAAATTATTTGATTGAATATAAA
16271529 AAAAAATTA
1 AAAAAATTA
16271538 AGAATTTATT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
25 12 0.38
26 20 0.62
ACGTcount: A:0.57, C:0.00, G:0.08, T:0.35
Consensus pattern (25 bp):
AAAAAATTATTTGATTGAATATAAA
Found at i:16299588 original size:2 final size:2
Alignment explanation
Indices: 16299583--16299610 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
16299573 CTTCTCTCCA
16299583 TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC
16299611 AGCTGAGTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:16300756 original size:7 final size:7
Alignment explanation
Indices: 16300744--16300773 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
16300734 ATGGAGGTAG
16300744 CCATGGT
1 CCATGGT
16300751 CCATGGT
1 CCATGGT
16300758 CCATGGT
1 CCATGGT
16300765 CCATGGT
1 CCATGGT
16300772 CC
1 CC
16300774 CTCCCTAGGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.13, C:0.33, G:0.27, T:0.27
Consensus pattern (7 bp):
CCATGGT
Found at i:16301490 original size:7 final size:7
Alignment explanation
Indices: 16301447--16301494 Score: 50
Period size: 7 Copynumber: 7.3 Consensus size: 7
16301437 ATTTTATTTT
16301447 TTAAT-A
1 TTAATAA
16301453 TTAATAA
1 TTAATAA
*
16301460 TTTATAA
1 TTAATAA
16301467 TTAATTAA
1 TTAA-TAA
16301475 --AAT-A
1 TTAATAA
16301479 TTAATAA
1 TTAATAA
16301486 TTAATAA
1 TTAATAA
16301493 TT
1 TT
16301495 TAAATATCAA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
4 1 0.03
5 1 0.03
6 10 0.29
7 20 0.57
8 3 0.09
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (7 bp):
TTAATAA
Found at i:16301524 original size:52 final size:52
Alignment explanation
Indices: 16301467--16301589 Score: 124
Period size: 52 Copynumber: 2.3 Consensus size: 52
16301457 TAATTTATAA
*
16301467 TTAATTAAAATATTAATAATTAATAAT-TTAAATATCAATATTTTAATA-TAGT
1 TTAATTAAAATATTAATAATTAATAATATT--ATATCAATAATTTAATATTAGT
* ** * ** *
16301519 TTAATTATTAATATTTTTAATTAATAATATTTTATTTATAATTTAATATTATT
1 TTAATTA-AAATATTAATAATTAATAATATTATATCAATAATTTAATATTAGT
*
16301572 TTGATTAAAATATTAATA
1 TTAATTAAAATATTAATA
16301590 TTTTTATTTT
Statistics
Matches: 56, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
52 28 0.50
53 26 0.46
54 2 0.04
ACGTcount: A:0.46, C:0.01, G:0.02, T:0.52
Consensus pattern (52 bp):
TTAATTAAAATATTAATAATTAATAATATTATATCAATAATTTAATATTAGT
Found at i:16301539 original size:16 final size:16
Alignment explanation
Indices: 16301518--16301551 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
16301508 TTTAATATAG
*
16301518 TTTAATTATTAATATT
1 TTTAATTAATAATATT
16301534 TTTAATTAATAATATT
1 TTTAATTAATAATATT
16301550 TT
1 TT
16301552 ATTTATAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TTTAATTAATAATATT
Found at i:16301564 original size:22 final size:22
Alignment explanation
Indices: 16301530--16301598 Score: 65
Period size: 22 Copynumber: 3.2 Consensus size: 22
16301520 TAATTATTAA
*
16301530 TATTTTTAA-TTAATAATATTT
1 TATTTATAATTTAATAATATTT
*
16301551 TATTTATAATTTAATATTATTT
1 TATTTATAATTTAATAATATTT
*
16301573 TGA-TTAAAATATTAAT-AT-TTT
1 T-ATTTATAAT-TTAATAATATTT
16301594 TATTT
1 TATTT
16301599 TTTATTTATA
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
20 1 0.03
21 14 0.35
22 19 0.47
23 6 0.15
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.61
Consensus pattern (22 bp):
TATTTATAATTTAATAATATTT
Found at i:16301632 original size:8 final size:8
Alignment explanation
Indices: 16301621--16301739 Score: 57
Period size: 8 Copynumber: 14.5 Consensus size: 8
16301611 CATTAAAAAT
16301621 TTAATATA
1 TTAATATA
16301629 TTAATA-A
1 TTAATATA
16301636 TTTAATA-A
1 -TTAATATA
* *
16301644 ATAAAATA
1 TTAATATA
16301652 TTAATA-A
1 TTAATATA
*
16301659 TTTAAAATA
1 -TTAATATA
*
16301668 TTAATATT
1 TTAATATA
* *
16301676 TTAATGTT
1 TTAATATA
16301684 TTAATCATA
1 TTAAT-ATA
16301693 TTAATATTA
1 TTAATA-TA
* *
16301702 ATAATGT-
1 TTAATATA
16301709 TTAAATTATA
1 TT-AA-TATA
*
16301719 TATAAAATA
1 T-TAATATA
*
16301728 TTAATATT
1 TTAATATA
16301736 TTAA
1 TTAA
16301740 ATTTTACAAA
Statistics
Matches: 84, Mismatches: 17, Indels: 20
0.69 0.14 0.17
Matches are distributed among these distances:
7 7 0.08
8 54 0.64
9 19 0.23
10 3 0.04
11 1 0.01
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.48
Consensus pattern (8 bp):
TTAATATA
Found at i:16301637 original size:16 final size:16
Alignment explanation
Indices: 16301612--16301698 Score: 65
Period size: 16 Copynumber: 5.4 Consensus size: 16
16301602 ATTTATACTC
*
16301612 ATTAAAAATTTAATAT
1 ATTAATAATTTAATAT
16301628 ATTAATAATTTAATA-
1 ATTAATAATTTAATAT
*
16301643 AATAA-AATATTAATA-
1 ATTAATAAT-TTAATAT
16301658 ATTTAA-AATATTAATAT
1 A-TTAATAAT-TTAATAT
* **
16301675 TTTAATGTTTTAATCAT
1 ATTAATAATTTAAT-AT
16301692 ATTAATA
1 ATTAATA
16301699 TTAATAATGT
Statistics
Matches: 58, Mismatches: 8, Indels: 9
0.77 0.11 0.12
Matches are distributed among these distances:
14 3 0.05
15 11 0.19
16 36 0.62
17 8 0.14
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.46
Consensus pattern (16 bp):
ATTAATAATTTAATAT
Found at i:16301672 original size:47 final size:48
Alignment explanation
Indices: 16301616--16301739 Score: 128
Period size: 47 Copynumber: 2.5 Consensus size: 48
16301606 ATACTCATTA
*
16301616 AAAAT-TTAATATATTAATAATTTAATAA-ATAAAATATTAATAA-TTT
1 AAAATATTAATATATTAATATTTTAATAATAT-AAATATTAATAAGTTT
* * * *
16301662 AAAATATTAATATTTTAATGTTTTAATCATATTAATATTAATAATGTTT
1 AAAATATTAATATATTAATATTTTAATAATATAAATATTAATAA-GTTT
*
16301711 AAATTATATATAAAATATTAATATTTTAA
1 AAA--ATAT-TAATATATTAATATTTTAA
16301740 ATTTTACAAA
Statistics
Matches: 63, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
46 5 0.08
47 30 0.48
48 2 0.03
49 6 0.10
51 4 0.06
52 16 0.25
ACGTcount: A:0.51, C:0.01, G:0.02, T:0.47
Consensus pattern (48 bp):
AAAATATTAATATATTAATATTTTAATAATATAAATATTAATAAGTTT
Found at i:16313183 original size:27 final size:26
Alignment explanation
Indices: 16313144--16313204 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 26
16313134 CCAAAAAGCG
*
16313144 TTCCAAGCACAAAAACATCTAGAGTCA
1 TTCCAAGCACAAAAACATCTAG-GGCA
** * *
16313171 TTCCAAGTGCAAAAGCGTCTAGGGCA
1 TTCCAAGCACAAAAACATCTAGGGCA
16313197 TTCCAAGC
1 TTCCAAGC
16313205 GTGAAAGCAC
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
26 10 0.36
27 18 0.64
ACGTcount: A:0.36, C:0.26, G:0.18, T:0.20
Consensus pattern (26 bp):
TTCCAAGCACAAAAACATCTAGGGCA
Found at i:16313247 original size:21 final size:21
Alignment explanation
Indices: 16313218--16313260 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
16313208 AAAGCACCCA
*
16313218 GGGTATTTCGAGC-TCGGAAGC
1 GGGTATTTCAAGCAT-GGAAGC
*
16313239 GGGTGTTTCAAGCATGGAAGC
1 GGGTATTTCAAGCATGGAAGC
16313260 G
1 G
16313261 TCCAGGGATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 18 0.95
22 1 0.05
ACGTcount: A:0.21, C:0.16, G:0.40, T:0.23
Consensus pattern (21 bp):
GGGTATTTCAAGCATGGAAGC
Found at i:16313340 original size:27 final size:28
Alignment explanation
Indices: 16313310--16313441 Score: 74
Period size: 27 Copynumber: 4.8 Consensus size: 28
16313300 TTAAGTGCAG
16313310 AAGCGCCCAAGGGTGTTCTAAGC-TCGA
1 AAGCGCCCAAGGGTGTTCTAAGCATCGA
* * * *
16313337 AAGCGCTCAAAGGTCGTTCTAAGCGTGGA
1 AAGCGCCCAAGGGT-GTTCTAAGCATCGA
* * * * *
16313366 AA-TGCCCAAGAGTTGTTCCAAGC-GCGG
1 AAGCGCCCAAG-GGTGTTCTAAGCATCGA
** * * **
16313393 AAGTACCCAAGGGTATTCCAAGCAAGGA
1 AAGCGCCCAAGGGTGTTCTAAGCATCGA
*
16313421 AA-CGCCCAAGGGTGTTTTAAG
1 AAGCGCCCAAGGGTGTTCTAAG
16313442 TATGGAAGCG
Statistics
Matches: 78, Mismatches: 22, Indels: 10
0.71 0.20 0.09
Matches are distributed among these distances:
27 39 0.50
28 32 0.41
29 7 0.09
ACGTcount: A:0.30, C:0.23, G:0.29, T:0.19
Consensus pattern (28 bp):
AAGCGCCCAAGGGTGTTCTAAGCATCGA
Found at i:16313504 original size:27 final size:27
Alignment explanation
Indices: 16313474--16313530 Score: 62
Period size: 26 Copynumber: 2.1 Consensus size: 27
16313464 CCAAGTGCAA
* * * *
16313474 AAGCCCCCATGGGCGTTCCAAGCGCGG
1 AAGCCACCAGGGGCATTCCAAGCACGG
*
16313501 AAG-CACCAGGGGTATTCCAAGCACGG
1 AAGCCACCAGGGGCATTCCAAGCACGG
16313527 AAGC
1 AAGC
16313531 ATCCAAGAAC
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.32, G:0.32, T:0.11
Consensus pattern (27 bp):
AAGCCACCAGGGGCATTCCAAGCACGG
Found at i:16319120 original size:3 final size:3
Alignment explanation
Indices: 16319112--16319142 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
16319102 ATGACTTTAC
16319112 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
16319143 GGTTGGGTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:16330441 original size:65 final size:64
Alignment explanation
Indices: 16330360--16330493 Score: 250
Period size: 65 Copynumber: 2.1 Consensus size: 64
16330350 TTTTATCAGT
16330360 CATAATAGCAGTCTTTAACCCAGGAAATTTCAACCTAGAAAATATAACTTGAAATATTAAACAA
1 CATAATAGCAGTCTTTAACCCAGGAAATTTCAACCTAGAAAATATAACTTGAAATATTAAACAA
16330424 NCATAATAGCAGTCTTTAACCCAGGAAATTTCAACCTAGAAAATATAACTTGAAATATTAAACAA
1 -CATAATAGCAGTCTTTAACCCAGGAAATTTCAACCTAGAAAATATAACTTGAAATATTAAACAA
*
16330489 AATAA
1 CATAA
16330494 AAACATAAAA
Statistics
Matches: 68, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
64 4 0.06
65 64 0.94
ACGTcount: A:0.48, C:0.16, G:0.09, T:0.26
Consensus pattern (64 bp):
CATAATAGCAGTCTTTAACCCAGGAAATTTCAACCTAGAAAATATAACTTGAAATATTAAACAA
Found at i:16331426 original size:12 final size:12
Alignment explanation
Indices: 16331396--16331427 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
16331386 AAAATATGCC
*
16331396 ATGTCAGCGTTG
1 ATGTCATCGTTG
16331408 ATGTCATCGTTG
1 ATGTCATCGTTG
16331420 ATGTCATC
1 ATGTCATC
16331428 ATTTTTAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.19, C:0.19, G:0.25, T:0.38
Consensus pattern (12 bp):
ATGTCATCGTTG
Found at i:16334158 original size:89 final size:92
Alignment explanation
Indices: 16334002--16334257 Score: 304
Period size: 89 Copynumber: 2.8 Consensus size: 92
16333992 GAAATTACAC
* * * * * *
16334002 GCCATATACAAAAACATGTTA-CACACTATAGTTAGGTTGTTACACATTATGTACAAAAACATGT
1 GCCATATACAAAAACAT-CTAGCACGCCATAATTAGGTTGTTACACGTTATATACAAAAACATGT
*
16334066 GACACGTCATGGTTAGGTTGTTACACAT
65 GACACGTCATGGTTAAGTTGTTACACAT
* * * * *
16334094 GTCATATGC-AAAACATGT-G-ACGCCATAATTAGGTTATTACACGTTATATACAAAAATATGTG
1 GCCATATACAAAAACATCTAGCACGCCATAATTAGGTTGTTACACGTTATATACAAAAACATGTG
16334156 ACACGTCATGGTTAAGTTGTTACACAT
66 ACACGTCATGGTTAAGTTGTTACACAT
* * * ** *
16334183 GCCATGTACAAAAACATCTAGCACGCTATAGTTAGGTTGTTACACGCCATATACAAAAACATGTT
1 GCCATATACAAAAACATCTAGCACGCCATAATTAGGTTGTTACACGTTATATACAAAAACATGTG
*
16334248 ACACGCCATG
66 ACACGTCATG
16334258 TATAAAAACA
Statistics
Matches: 137, Mismatches: 23, Indels: 8
0.82 0.14 0.05
Matches are distributed among these distances:
89 68 0.50
90 9 0.07
91 8 0.06
92 52 0.38
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (92 bp):
GCCATATACAAAAACATCTAGCACGCCATAATTAGGTTGTTACACGTTATATACAAAAACATGTG
ACACGTCATGGTTAAGTTGTTACACAT
Found at i:16334253 original size:45 final size:45
Alignment explanation
Indices: 16333996--16334253 Score: 222
Period size: 45 Copynumber: 5.7 Consensus size: 45
16333986 TTTAATGAAA
*
16333996 TTACACGCCATATACAAAAACATGTTACACACTATAGTTAGGTTG
1 TTACACGCCATATACAAAAACATGTTACACGCTATAGTTAGGTTG
*** * * *
16334041 TTACACATTATGTACAAAAACATGTGACACG-TCATGGTTAGGTTG
1 TTACACGCCATATACAAAAACATGTTACACGCT-ATAGTTAGGTTG
* * * * * *
16334086 TTACACATGTCATATGC-AAAACATG-T-GACGCCATAATTAGGTTA
1 TTACAC--GCCATATACAAAAACATGTTACACGCTATAGTTAGGTTG
** * * * *
16334130 TTACACGTTATATACAAAAATATGTGACACG-TCATGGTTAAGTTG
1 TTACACGCCATATACAAAAACATGTTACACGCT-ATAGTTAGGTTG
* *
16334175 TTACACATGCCATGTACAAAAACAT-CTAGCACGCTATAGTTAGGTTG
1 TTACAC--GCCATATACAAAAACATGTTA-CACGCTATAGTTAGGTTG
16334222 TTACACGCCATATACAAAAACATGTTACACGC
1 TTACACGCCATATACAAAAACATGTTACACGC
16334254 CATGTATAAA
Statistics
Matches: 163, Mismatches: 37, Indels: 26
0.72 0.16 0.12
Matches are distributed among these distances:
42 7 0.04
43 7 0.04
44 19 0.12
45 80 0.49
46 11 0.07
47 38 0.23
48 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (45 bp):
TTACACGCCATATACAAAAACATGTTACACGCTATAGTTAGGTTG
Found at i:16334276 original size:26 final size:24
Alignment explanation
Indices: 16334220--16334270 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
16334210 ATAGTTAGGT
16334220 TGTTACACGCCATATACAAAAACA
1 TGTTACACGCCATATACAAAAACA
* *
16334244 TGTTACACGCCATGTATAAAAACA
1 TGTTACACGCCATATACAAAAACA
16334268 TGT
1 TGT
16334271 GATACATCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.41, C:0.22, G:0.12, T:0.25
Consensus pattern (24 bp):
TGTTACACGCCATATACAAAAACA
Found at i:16334338 original size:45 final size:45
Alignment explanation
Indices: 16334293--16334497 Score: 286
Period size: 45 Copynumber: 4.6 Consensus size: 45
16334283 TTAGGTTGTT
* *
16334293 ACACGTCATGGTTAGGTTGTTACATGCTATGTATAAAAATATGTT
1 ACACGTCATGGTTAGGTTGTTACATGCTATGTACAAAAATATGTG
*
16334338 ACACGTCATGGTTAGGTTGTTACATGCTATGTATAAAAATATGTG
1 ACACGTCATGGTTAGGTTGTTACATGCTATGTACAAAAATATGTG
* * *
16334383 ACACGTCATGATTAGGTTGTTACATG-TCATGTACAAAAACACGTG
1 ACACGTCATGGTTAGGTTGTTACATGCT-ATGTACAAAAATATGTG
* * * *
16334428 ACATGTCATAGTTATGTTGTTACATGCCATGTACAAAAATATGTG
1 ACACGTCATGGTTAGGTTGTTACATGCTATGTACAAAAATATGTG
* *
16334473 ACATGTCATGGTTAGATTGTTACAT
1 ACACGTCATGGTTAGGTTGTTACAT
16334498 ATCATATTGA
Statistics
Matches: 143, Mismatches: 15, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
44 1 0.01
45 142 0.99
ACGTcount: A:0.32, C:0.13, G:0.20, T:0.35
Consensus pattern (45 bp):
ACACGTCATGGTTAGGTTGTTACATGCTATGTACAAAAATATGTG
Found at i:16334360 original size:21 final size:21
Alignment explanation
Indices: 16334277--16334361 Score: 75
Period size: 21 Copynumber: 3.9 Consensus size: 21
16334267 ATGTGATACA
*
16334277 TCATAGTTAGGTTGTTACACG
1 TCATGGTTAGGTTGTTACACG
*
16334298 TCATGGTTAGGTTGTTACATG
1 TCATGGTTAGGTTGTTACACG
**
16334319 -CTAT-GTATAAAAATATGTTACACG
1 TC-ATGGT-T--AGGT-TGTTACACG
16334343 TCATGGTTAGGTTGTTACA
1 TCATGGTTAGGTTGTTACA
16334362 TGCTATGTAT
Statistics
Matches: 50, Mismatches: 7, Indels: 14
0.70 0.10 0.20
Matches are distributed among these distances:
20 3 0.06
21 29 0.58
22 2 0.04
23 2 0.04
24 11 0.22
25 3 0.06
ACGTcount: A:0.27, C:0.12, G:0.22, T:0.39
Consensus pattern (21 bp):
TCATGGTTAGGTTGTTACACG
Found at i:16334387 original size:90 final size:90
Alignment explanation
Indices: 16333996--16334502 Score: 289
Period size: 90 Copynumber: 5.6 Consensus size: 90
16333986 TTTAATGAAA
* * * * * * ** *
16333996 TTACACGCCATATACAAAAACATGTTACAC-ACTATAGTTAGGTTGTTACACATTATGTACAAAA
1 TTACATGCCATGTACAAAAATATGTGACACGTC-ATGGTTAGGTTGTTACATGTCATGTACAAAA
* *
16334060 ACATGTGACACGTCATGGTTAGGTTG
65 ACACGTGACACGTCATAGTTAGGTTG
* * * * * ** * * * *
16334086 TTACACATGTCATATGC-AAAACATGTG--ACGCCATAATTAGGTTATTACACGTTATATACAAA
1 TT--ACATGCCATGTACAAAAATATGTGACACGTCATGGTTAGGTTGTTACATGTCATGTACAAA
* * * *
16334148 AATATGTGACACGTCATGGTTAAGTTG
64 AACACGTGACACGTCATAGTTAGGTTG
* * * * * *
16334175 TTACACATGCCATGTACAAAAACATCT-AGCACG-CTATAGTTAGGTTGTTACACGCCATATACA
1 TT--ACATGCCATGTACAAAAATATGTGA-CACGTC-ATGGTTAGGTTGTTACATGTCATGTACA
* * * **
16334238 AAAACATGTTACACGCCAT-G-TA--TAA
62 AAAACACGTGACACGTCATAGTTAGGTTG
** ** ** * ** * *
16334263 AAACATGTGATACATCATAGTTAGGTTGTTACACGTCATGGTTAGGTTGTTACATG-CTATGTAT
1 TTACATGCCATGTA-CAAAAATA---TGTGACACGTCATGGTTAGGTTGTTACATGTC-ATGTAC
* * * *
16334327 AAAAATATGTTACACGTCATGGTTAGGTTG
61 AAAAACACGTGACACGTCATAGTTAGGTTG
* * *
16334357 TTACATGCTATGTATAAAAATATGTGACACGTCATGATTAGGTTGTTACATGTCATGTACAAAAA
1 TTACATGCCATGTACAAAAATATGTGACACGTCATGGTTAGGTTGTTACATGTCATGTACAAAAA
* *
16334422 CACGTGACATGTCATAGTTATGTTG
66 CACGTGACACGTCATAGTTAGGTTG
* * *
16334447 TTACATGCCATGTACAAAAATATGTGACATGTCATGGTTAGATTGTTACATATCAT
1 TTACATGCCATGTACAAAAATATGTGACACGTCATGGTTAGGTTGTTACATGTCAT
16334503 ATTGAAAAAA
Statistics
Matches: 329, Mismatches: 68, Indels: 40
0.75 0.16 0.09
Matches are distributed among these distances:
86 8 0.02
87 4 0.01
88 1 0.00
89 68 0.21
90 165 0.50
91 15 0.05
92 55 0.17
93 4 0.01
94 9 0.03
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (90 bp):
TTACATGCCATGTACAAAAATATGTGACACGTCATGGTTAGGTTGTTACATGTCATGTACAAAAA
CACGTGACACGTCATAGTTAGGTTG
Found at i:16334413 original size:21 final size:21
Alignment explanation
Indices: 16334283--16334413 Score: 68
Period size: 21 Copynumber: 6.0 Consensus size: 21
16334273 TACATCATAG
*
16334283 TTAGGTTGTTACACGTCATGG
1 TTAGGTTGTTACACGTCATGA
*
16334304 TTAGGTTGTTACATG-CTATGTA
1 TTAGGTTGTTACACGTC-ATG-A
* ** *
16334326 TAAAAATATGTTACACGTCATGG
1 T-TAGGT-TGTTACACGTCATGA
*
16334349 TTAGGTTGTTACATG-CTATGTA
1 TTAGGTTGTTACACGTC-ATG-A
* ** *
16334371 TAAAAATATGTGACACGTCATGA
1 T-TAGGT-TGTTACACGTCATGA
*
16334394 TTAGGTTGTTACATGTCATG
1 TTAGGTTGTTACACGTCATG
16334414 TACAAAAACA
Statistics
Matches: 78, Mismatches: 22, Indels: 20
0.65 0.18 0.17
Matches are distributed among these distances:
20 2 0.03
21 40 0.51
22 6 0.08
23 7 0.09
24 21 0.27
25 2 0.03
ACGTcount: A:0.28, C:0.11, G:0.22, T:0.38
Consensus pattern (21 bp):
TTAGGTTGTTACACGTCATGA
Found at i:16334511 original size:45 final size:44
Alignment explanation
Indices: 16334032--16334511 Score: 216
Period size: 45 Copynumber: 10.6 Consensus size: 44
16334022 ACACACTATA
*
16334032 GTTAGGTTGTTACA--CATTATGTACAAAAACATGTGACACGTCATG
1 GTTAGGTTGTTACATGCA-TAT-T-CAAAAATATGTGACACGTCATG
* * * *
16334077 GTTAGGTTGTTACACATGTCATATGC-AAAACATGTG--ACGCCATA
1 GTTAGGTTGTT--ACATG-CATATTCAAAAATATGTGACACGTCATG
* * * * *
16334121 ATTAGGTTATTACACGTTATATACAAAAATATGTGACACGTCATG
1 GTTAGGTTGTTACATG-CATATTCAAAAATATGTGACACGTCATG
* * * * * *
16334166 GTTAAGTTGTTACACATGCCATGTACAAAAACATCT-AGCACG-CTATA
1 GTTAGGTTGTT--ACATG-CATATTCAAAAATATGTGA-CACGTC-ATG
* * * * *
16334213 GTTAGGTTGTTACACGCCATATACAAAAACATGTTACACGCCAT-
1 GTTAGGTTGTTACATG-CATATTCAAAAATATGTGACACGTCATG
** * ** *
16334257 GTATAAAAACATGTGATACAT-CATAGTT---AGGT-TGTTACACGTCATG
1 GT-T----AGGT-TGTTACATGCATA-TTCAAAAATATGTGACACGTCATG
* *
16334303 GTTAGGTTGTTACATGC-TATGTATAAAAATATGTTACACGTCATG
1 GTTAGGTTGTTACATGCATAT-T-CAAAAATATGTGACACGTCATG
*
16334348 GTTAGGTTGTTACATGC-TATGTATAAAAATATGTGACACGTCATG
1 GTTAGGTTGTTACATGCATAT-T-CAAAAATATGTGACACGTCATG
* * * * * * *
16334393 ATTAGGTTGTTACATGTCATGTACAAAAACACGTGACATGTCATA
1 GTTAGGTTGTTACATG-CATATTCAAAAATATGTGACACGTCATG
* * * *
16334438 GTTATGTTGTTACATGCCATGTACAAAAATATGTGACATGTCATG
1 GTTAGGTTGTTACATG-CATATTCAAAAATATGTGACACGTCATG
* * *
16334483 GTTAGATTGTTACATATCATATTGAAAAA
1 GTTAGGTTGTTACAT-GCATATTCAAAAA
16334512 AAATATTGTT
Statistics
Matches: 343, Mismatches: 60, Indels: 64
0.73 0.13 0.14
Matches are distributed among these distances:
39 1 0.00
40 10 0.03
41 3 0.01
42 10 0.03
43 9 0.03
44 19 0.06
45 216 0.63
46 18 0.05
47 39 0.11
48 4 0.01
49 6 0.02
50 8 0.02
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.33
Consensus pattern (44 bp):
GTTAGGTTGTTACATGCATATTCAAAAATATGTGACACGTCATG
Found at i:16334525 original size:31 final size:30
Alignment explanation
Indices: 16334488--16334572 Score: 98
Period size: 30 Copynumber: 2.8 Consensus size: 30
16334478 TCATGGTTAG
* *
16334488 ATTGTTACATATCATATTGAAAAAAAATATT
1 ATTGTTACACACCATATTG-AAAAAAATATT
* * *
16334519 GTTGTTACACGCCATGTTGAAAAAAATATT
1 ATTGTTACACACCATATTGAAAAAAATATT
* *
16334549 ATTGTTATACACCATATTCAAAAA
1 ATTGTTACACACCATATTGAAAAA
16334573 CATTTTGTTA
Statistics
Matches: 44, Mismatches: 10, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
30 30 0.68
31 14 0.32
ACGTcount: A:0.44, C:0.12, G:0.09, T:0.35
Consensus pattern (30 bp):
ATTGTTACACACCATATTGAAAAAAATATT
Found at i:16335833 original size:6 final size:6
Alignment explanation
Indices: 16335801--16335832 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
16335791 TAAAATTAAG
*
16335801 AATGAA AATGAA AATGAA AATGAA AAAGAA AA
1 AATGAA AATGAA AATGAA AATGAA AATGAA AA
16335833 AATCAAGAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.72, C:0.00, G:0.16, T:0.12
Consensus pattern (6 bp):
AATGAA
Found at i:16342827 original size:15 final size:15
Alignment explanation
Indices: 16342785--16342835 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
16342775 ATTTAGTACT
16342785 TTACAATGCAATGTGA
1 TTACAA-GCAATGTGA
* * * *
16342801 TTATAGGTAATGTAA
1 TTACAAGCAATGTGA
16342816 TTACAAGCAATGTGA
1 TTACAAGCAATGTGA
16342831 TTACA
1 TTACA
16342836 TAAAAGATAA
Statistics
Matches: 27, Mismatches: 8, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
15 23 0.85
16 4 0.15
ACGTcount: A:0.39, C:0.10, G:0.18, T:0.33
Consensus pattern (15 bp):
TTACAAGCAATGTGA
Found at i:16343060 original size:33 final size:33
Alignment explanation
Indices: 16343023--16343125 Score: 97
Period size: 33 Copynumber: 3.2 Consensus size: 33
16343013 ATATAATGTC
16343023 ATTTTTAAATATATTTTTA-ATGTCATATATTTT
1 ATTTTTAAATATATTTTTACATGT-ATATATTTT
* * * * *
16343056 ATTTTT-CATTTCTTGTTACAGGTATATATTTT
1 ATTTTTAAATATATTTTTACATGTATATATTTT
*
16343088 ATTTTTAACATA-ATTTCTTATAT-TATATATTTT
1 ATTTTTAA-ATATATTT-TTACATGTATATATTTT
16343121 ATTTT
1 ATTTT
16343126 AATTTTTTTC
Statistics
Matches: 55, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
32 23 0.42
33 26 0.47
34 6 0.11
ACGTcount: A:0.29, C:0.06, G:0.04, T:0.61
Consensus pattern (33 bp):
ATTTTTAAATATATTTTTACATGTATATATTTT
Found at i:16344566 original size:2 final size:2
Alignment explanation
Indices: 16344559--16344593 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
16344549 AATGAATCTA
16344559 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
16344594 AAGTATAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:16344608 original size:13 final size:15
Alignment explanation
Indices: 16344559--16344608 Score: 54
Period size: 14 Copynumber: 3.6 Consensus size: 15
16344549 AATGAATCTA
*
16344559 ATATATATA-TATAT
1 ATATATAAAGTATAT
*
16344573 ATATATATA-TATAT
1 ATATATAAAGTATAT
16344587 ATATATAAAGTATA-
1 ATATATAAAGTATAT
16344601 ATAT-TAAA
1 ATATATAAA
16344609 AGATATTACA
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
13 4 0.12
14 26 0.76
15 4 0.12
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (15 bp):
ATATATAAAGTATAT
Found at i:16345622 original size:20 final size:20
Alignment explanation
Indices: 16345535--16345624 Score: 64
Period size: 20 Copynumber: 4.7 Consensus size: 20
16345525 ATGTTATTAT
* * *
16345535 TATTTTTGTTTTATTATAAT
1 TATTTTTATTTAATTATAAA
*
16345555 TATTTTTA--TAATTATAGA
1 TATTTTTATTTAATTATAAA
** *
16345573 T-TTTAAATTTAAATAATAAA
1 TATTTTTATTT-AATTATAAA
*
16345593 -A-TTATATTTAATTATAAA
1 TATTTTTATTTAATTATAAA
16345611 TATTTTTATTTAAT
1 TATTTTTATTTAAT
16345625 CATGTTAAAC
Statistics
Matches: 53, Mismatches: 11, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
17 4 0.08
18 16 0.30
19 9 0.17
20 24 0.45
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (20 bp):
TATTTTTATTTAATTATAAA
Found at i:16345640 original size:9 final size:9
Alignment explanation
Indices: 16345627--16345676 Score: 73
Period size: 9 Copynumber: 5.6 Consensus size: 9
16345617 TATTTAATCA
16345627 TGTTAAACG
1 TGTTAAACG
* *
16345636 GGTTAATCG
1 TGTTAAACG
16345645 TGTTAAACG
1 TGTTAAACG
*
16345654 TGTTAATCG
1 TGTTAAACG
16345663 TGTTAAACG
1 TGTTAAACG
16345672 TGTTA
1 TGTTA
16345677 TTAATCGTAT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 35 1.00
ACGTcount: A:0.28, C:0.10, G:0.24, T:0.38
Consensus pattern (9 bp):
TGTTAAACG
Found at i:16345643 original size:18 final size:18
Alignment explanation
Indices: 16345620--16345676 Score: 96
Period size: 18 Copynumber: 3.2 Consensus size: 18
16345610 ATATTTTTAT
* *
16345620 TTAATCATGTTAAACGGG
1 TTAATCGTGTTAAACGTG
16345638 TTAATCGTGTTAAACGTG
1 TTAATCGTGTTAAACGTG
16345656 TTAATCGTGTTAAACGTG
1 TTAATCGTGTTAAACGTG
16345674 TTA
1 TTA
16345677 TTAATCGTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 37 1.00
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.39
Consensus pattern (18 bp):
TTAATCGTGTTAAACGTG
Found at i:16345650 original size:27 final size:27
Alignment explanation
Indices: 16345620--16345676 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
16345610 ATATTTTTAT
* *
16345620 TTAATCATGTTAAACGGGTTAATCGTG
1 TTAAACATGTTAAACGGGTTAAACGTG
* * *
16345647 TTAAACGTGTTAATCGTGTTAAACGTG
1 TTAAACATGTTAAACGGGTTAAACGTG
16345674 TTA
1 TTA
16345677 TTAATCGTAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.39
Consensus pattern (27 bp):
TTAAACATGTTAAACGGGTTAAACGTG
Found at i:16358790 original size:16 final size:16
Alignment explanation
Indices: 16358769--16358801 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
16358759 CTCCTCAACT
16358769 AACCTTTTTCTCCTTC
1 AACCTTTTTCTCCTTC
16358785 AACCTTTTTCTCCTTC
1 AACCTTTTTCTCCTTC
16358801 A
1 A
16358802 CCCTCCCTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.15, C:0.36, G:0.00, T:0.48
Consensus pattern (16 bp):
AACCTTTTTCTCCTTC
Found at i:16359893 original size:9 final size:9
Alignment explanation
Indices: 16359869--16359916 Score: 60
Period size: 9 Copynumber: 5.0 Consensus size: 9
16359859 ATTTTTTTGA
16359869 TTATTTATTAT
1 TTATTT-TT-T
16359880 TTATTTTTT
1 TTATTTTTT
16359889 TTATTTTTT
1 TTATTTTTT
*
16359898 TTGTTTTTT
1 TTATTTTTT
16359907 TCTATTTTTT
1 T-TATTTTTT
16359917 ATTTAGATCC
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
9 19 0.56
10 9 0.26
11 6 0.18
ACGTcount: A:0.12, C:0.02, G:0.02, T:0.83
Consensus pattern (9 bp):
TTATTTTTT
Found at i:16362691 original size:46 final size:46
Alignment explanation
Indices: 16362598--16362721 Score: 187
Period size: 46 Copynumber: 2.7 Consensus size: 46
16362588 ACCTCAAGCC
* *
16362598 GCCCTTTTTCGGGTTTTCGGCATGAGCCTCCTCCCTTAGGTACGAGCT
1 GCCC-TTTTCGGGTTTTCAGCATGAACC-CCTCCCTTAGGTACGAGCT
*
16362646 GCCCTTTTCGGGTTTTCAGCACGAACCCC-CCCTTTAGGTACGAGCT
1 GCCCTTTTCGGGTTTTCAGCATGAACCCCTCCC-TTAGGTACGAGCT
16362692 GCCCTTTTCGGGTTTTCAGCATGAACCCCT
1 GCCCTTTTCGGGTTTTCAGCATGAACCCCT
16362722 TCCGTTTTTT
Statistics
Matches: 70, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
45 3 0.04
46 43 0.61
47 20 0.29
48 4 0.06
ACGTcount: A:0.13, C:0.33, G:0.23, T:0.31
Consensus pattern (46 bp):
GCCCTTTTCGGGTTTTCAGCATGAACCCCTCCCTTAGGTACGAGCT
Found at i:16371866 original size:18 final size:17
Alignment explanation
Indices: 16371845--16371878 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
16371835 CTCTTCTTTT
16371845 TCTTTTTTTTCTTTTGCC
1 TCTTTTTTTT-TTTTGCC
16371863 TCTTTTTTTTTTTTGC
1 TCTTTTTTTTTTTTGC
16371879 GGTCGTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.00, C:0.18, G:0.06, T:0.76
Consensus pattern (17 bp):
TCTTTTTTTTTTTTGCC
Found at i:16379368 original size:21 final size:22
Alignment explanation
Indices: 16379324--16379368 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
16379314 GAGCCAAATT
*
16379324 AAGAAAGAATTGACATCTTAAG
1 AAGAAAGAATCGACATCTTAAG
*
16379346 AAGAAAGAATCGAC-TCTTTAG
1 AAGAAAGAATCGACATCTTAAG
16379367 AA
1 AA
16379369 ACAGAAAGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.49, C:0.11, G:0.18, T:0.22
Consensus pattern (22 bp):
AAGAAAGAATCGACATCTTAAG
Found at i:16379989 original size:36 final size:37
Alignment explanation
Indices: 16379875--16379991 Score: 146
Period size: 37 Copynumber: 3.2 Consensus size: 37
16379865 AAAGGTAGAG
** *
16379875 AAGTTGTGCTTGGTTCTTGAAAGGCAATGGCTTGTAA
1 AAGTTGTGCTTAATTCTTGAAAGGCAGTGGCTTGTAA
* * * *
16379912 AAATTGTGCTTAATCCTTGAAAGACAGTGGCTTGTAT
1 AAGTTGTGCTTAATTCTTGAAAGGCAGTGGCTTGTAA
* *
16379949 AAGTTGTGCTT-ATTCTTAAAAGGTAGTGGCTTGTAA
1 AAGTTGTGCTTAATTCTTGAAAGGCAGTGGCTTGTAA
16379985 AAGTTGT
1 AAGTTGT
16379992 ACTTGATCAT
Statistics
Matches: 67, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
36 27 0.40
37 40 0.60
ACGTcount: A:0.27, C:0.10, G:0.26, T:0.37
Consensus pattern (37 bp):
AAGTTGTGCTTAATTCTTGAAAGGCAGTGGCTTGTAA
Found at i:16388519 original size:27 final size:27
Alignment explanation
Indices: 16388485--16388634 Score: 98
Period size: 27 Copynumber: 5.7 Consensus size: 27
16388475 CTAGGAATGT
* *
16388485 TTCC-AAGTGCGTAATGCCCAAGGACG
1 TTCCTAAGTGCGTAACGCACAAGGACG
* *
16388511 TTCCTAAGT-CTGTAACGCATAAGGATG
1 TTCCTAAGTGC-GTAACGCACAAGGACG
* * *
16388538 TTCCTAAATGTGTAACGCACAAGGAGG
1 TTCCTAAGTGCGTAACGCACAAGGACG
*
16388565 TT-CTCAAGTGTGTAACGC-CTAAGGACG
1 TTCCT-AAGTGCGTAACGCAC-AAGGACG
* * * *
16388592 TTCC-AAGTGTGCAACAG-ACAGGGACA
1 TTCCTAAGTGCGTAAC-GCACAAGGACG
*
16388618 TTCC-AAGTACGTAACGC
1 TTCCTAAGTGCGTAACGC
16388635 TTGGGGACAT
Statistics
Matches: 99, Mismatches: 16, Indels: 18
0.74 0.12 0.14
Matches are distributed among these distances:
25 1 0.01
26 35 0.35
27 62 0.63
28 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.25, T:0.23
Consensus pattern (27 bp):
TTCCTAAGTGCGTAACGCACAAGGACG
Found at i:16388657 original size:26 final size:25
Alignment explanation
Indices: 16388569--16388657 Score: 81
Period size: 26 Copynumber: 3.4 Consensus size: 25
16388559 AGGAGGTTCT
* *
16388569 CAAGTGTGTAACGCCTAAGGACGTTC
1 CAAGTGTGTAACG-CTAGGGACATTC
*
16388595 CAAGTGTGCAACAGAC-AGGGACATTC
1 CAAGTGTGTAAC-G-CTAGGGACATTC
** *
16388621 CAAGTACGTAACGCTTGGGGACATTC
1 CAAGTGTGTAACGC-TAGGGACATTC
16388647 CAAGTGTGTAA
1 CAAGTGTGTAA
16388658 TACCCAAAGA
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
24 1 0.02
25 1 0.02
26 46 0.92
27 2 0.04
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.21
Consensus pattern (25 bp):
CAAGTGTGTAACGCTAGGGACATTC
Found at i:16392974 original size:24 final size:24
Alignment explanation
Indices: 16392900--16392983 Score: 69
Period size: 27 Copynumber: 3.2 Consensus size: 24
16392890 TGTTTTAATT
* **
16392900 ATAAATTATTCATATTTAAAAAGAAA
1 ATAAA-TAATCATA-TTAAAATTAAA
16392926 TATAAATAATCAATATTATGTAAATTAAA
1 -ATAAATAATC-ATATTA---AAATTAAA
*
16392955 ATAAATAATCATATTAAAATTTAA
1 ATAAATAATCATATTAAAATTAAA
16392979 ATAAA
1 ATAAA
16392984 AATTTATTAA
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
24 12 0.24
26 7 0.14
27 14 0.29
28 10 0.20
29 6 0.12
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.36
Consensus pattern (24 bp):
ATAAATAATCATATTAAAATTAAA
Found at i:16411015 original size:23 final size:23
Alignment explanation
Indices: 16410985--16411038 Score: 108
Period size: 23 Copynumber: 2.3 Consensus size: 23
16410975 TATATATATC
16410985 CATCATCATGCACACCCTCCCAT
1 CATCATCATGCACACCCTCCCAT
16411008 CATCATCATGCACACCCTCCCAT
1 CATCATCATGCACACCCTCCCAT
16411031 CATCATCA
1 CATCATCA
16411039 GCTCATATGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.28, C:0.46, G:0.04, T:0.22
Consensus pattern (23 bp):
CATCATCATGCACACCCTCCCAT
Found at i:16411077 original size:43 final size:42
Alignment explanation
Indices: 16411030--16411152 Score: 120
Period size: 42 Copynumber: 2.9 Consensus size: 42
16411020 CACCCTCCCA
* * *
16411030 TCATCATCAGCTCATATGCACTCCCCACTAGCACATGGCTGGG
1 TCATCATCAGCTCATACGCACT-CCCACTAGCACATAGCTGAG
* * * *
16411073 TCATCATCGGCTTATGCGCACTCCCACTCGCACATAGCTGAG
1 TCATCATCAGCTCATACGCACTCCCACTAGCACATAGCTGAG
* * * * * *
16411115 TCATCATCGGCTTATGCTCACTCCTACTCGCACATAGC
1 TCATCATCAGCTCATACGCACTCCCACTAGCACATAGC
16411153 CGGGTCAATA
Statistics
Matches: 71, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
42 53 0.75
43 18 0.25
ACGTcount: A:0.22, C:0.36, G:0.17, T:0.25
Consensus pattern (42 bp):
TCATCATCAGCTCATACGCACTCCCACTAGCACATAGCTGAG
Found at i:16411118 original size:42 final size:42
Alignment explanation
Indices: 16411047--16411152 Score: 158
Period size: 42 Copynumber: 2.5 Consensus size: 42
16411037 CAGCTCATAT
* * *
16411047 GCACTCCCCACTAGCACATGGCTGGGTCATCATCGGCTTATGC
1 GCACT-CCCACTCGCACATAGCTGAGTCATCATCGGCTTATGC
16411090 GCACTCCCACTCGCACATAGCTGAGTCATCATCGGCTTATGC
1 GCACTCCCACTCGCACATAGCTGAGTCATCATCGGCTTATGC
* *
16411132 TCACTCCTACTCGCACATAGC
1 GCACTCCCACTCGCACATAGC
16411153 CGGGTCAATA
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
42 53 0.91
43 5 0.09
ACGTcount: A:0.21, C:0.37, G:0.19, T:0.24
Consensus pattern (42 bp):
GCACTCCCACTCGCACATAGCTGAGTCATCATCGGCTTATGC
Found at i:16413416 original size:34 final size:32
Alignment explanation
Indices: 16413361--16413426 Score: 105
Period size: 34 Copynumber: 2.0 Consensus size: 32
16413351 AACTCATTGG
*
16413361 ATTAAGTTAAGAGAGAAAGGTAAGATTTAGAT
1 ATTAAGTTAAGAAAGAAAGGTAAGATTTAGAT
16413393 ATTAAGTTAGGAGAAAGAAAGGTAAGATTTAGAT
1 ATTAAGTTA--AGAAAGAAAGGTAAGATTTAGAT
16413427 GAAGTGTGAG
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 9 0.29
34 22 0.71
ACGTcount: A:0.47, C:0.00, G:0.26, T:0.27
Consensus pattern (32 bp):
ATTAAGTTAAGAAAGAAAGGTAAGATTTAGAT
Found at i:16417085 original size:2 final size:2
Alignment explanation
Indices: 16417018--16417067 Score: 86
Period size: 2 Copynumber: 26.0 Consensus size: 2
16417008 ATTAGACGAG
16417018 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
16417059 TA TA T- TA TA
1 TA TA TA TA TA
16417068 GAGTAGTTAT
Statistics
Matches: 46, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
1 2 0.04
2 44 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:16427753 original size:16 final size:16
Alignment explanation
Indices: 16427734--16427769 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
16427724 TTTTAAGCAT
*
16427734 TGCGTGGCTTAATCAC
1 TGCGTGGCCTAATCAC
16427750 TGCGTGGCCTAATCAC
1 TGCGTGGCCTAATCAC
16427766 TGCG
1 TGCG
16427770 AGATTGATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.17, C:0.28, G:0.28, T:0.28
Consensus pattern (16 bp):
TGCGTGGCCTAATCAC
Found at i:16427801 original size:21 final size:21
Alignment explanation
Indices: 16427771--16427844 Score: 94
Period size: 21 Copynumber: 3.5 Consensus size: 21
16427761 ATCACTGCGA
16427771 GATTGATTTTAGGCATTACGT
1 GATTGATTTTAGGCATTACGT
* * *
16427792 GATTGGTTTTAGGTAATACGT
1 GATTGATTTTAGGCATTACGT
* *
16427813 GACTGATTTTTAGACATTACGT
1 GATTGA-TTTTAGGCATTACGT
16427835 GATTGATTTT
1 GATTGATTTT
16427845 TAAGTAATGC
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
21 26 0.60
22 17 0.40
ACGTcount: A:0.24, C:0.08, G:0.23, T:0.45
Consensus pattern (21 bp):
GATTGATTTTAGGCATTACGT
Found at i:16427833 original size:22 final size:22
Alignment explanation
Indices: 16427771--16427846 Score: 93
Period size: 22 Copynumber: 3.5 Consensus size: 22
16427761 ATCACTGCGA
16427771 GATTGA-TTTTAGGCATTACGT
1 GATTGATTTTTAGGCATTACGT
* * *
16427792 GATTG-GTTTTAGGTAATACGT
1 GATTGATTTTTAGGCATTACGT
* *
16427813 GACTGATTTTTAGACATTACGT
1 GATTGATTTTTAGGCATTACGT
16427835 GATTGATTTTTA
1 GATTGATTTTTA
16427847 AGTAATGCCT
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
21 22 0.49
22 23 0.51
ACGTcount: A:0.25, C:0.08, G:0.22, T:0.45
Consensus pattern (22 bp):
GATTGATTTTTAGGCATTACGT
Found at i:16427897 original size:23 final size:23
Alignment explanation
Indices: 16427871--16427942 Score: 92
Period size: 23 Copynumber: 3.2 Consensus size: 23
16427861 CACACAATAC
*
16427871 CTTACTAACTAGTCACGTAATGT
1 CTTACTAACTAGTCATGTAATGT
** *
16427894 CTTAAGAACTGGTCATGTAATGT
1 CTTACTAACTAGTCATGTAATGT
*
16427917 CTTACTAACAAGTCATGTAATG-
1 CTTACTAACTAGTCATGTAATGT
16427939 CTTA
1 CTTA
16427943 TCAATTAGTT
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
22 4 0.10
23 37 0.90
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (23 bp):
CTTACTAACTAGTCATGTAATGT
Found at i:16428001 original size:22 final size:22
Alignment explanation
Indices: 16427978--16428172 Score: 146
Period size: 22 Copynumber: 9.0 Consensus size: 22
16427968 AACCAGCCAT
*
16427978 GCAATACTTAAAAACTAGTCAT
1 GCAATACTTAAAAACTAGTCAC
** **
16428000 GCAATAC-CCAAAGTTAGTCAC
1 GCAATACTTAAAAACTAGTCAC
* * *
16428021 GTAATACTTAAAAATTAGTTAC
1 GCAATACTTAAAAACTAGTCAC
* *
16428043 GCAATGCTTAAAAACTAGTTAC
1 GCAATACTTAAAAACTAGTCAC
* ** **
16428065 GCAATGCCCAAAGTC-AGTCAC
1 GCAATACTTAAAAACTAGTCAC
** ** * *
16428086 ATAATA--TCCAAAGTCAGTTAC
1 GCAATACTTAAAAACT-AGTCAC
16428107 GCAATACTTAAAAACTAGTCAC
1 GCAATACTTAAAAACTAGTCAC
* *
16428129 GTAATGCTTAAAAACTAGTCAC
1 GCAATACTTAAAAACTAGTCAC
16428151 GCAATACTTAAAAACTAGTCAC
1 GCAATACTTAAAAACTAGTCAC
16428173 ATAATGTCCA
Statistics
Matches: 130, Mismatches: 38, Indels: 10
0.73 0.21 0.06
Matches are distributed among these distances:
19 1 0.01
21 32 0.25
22 92 0.71
23 5 0.04
ACGTcount: A:0.42, C:0.21, G:0.12, T:0.25
Consensus pattern (22 bp):
GCAATACTTAAAAACTAGTCAC
Found at i:16428053 original size:65 final size:64
Alignment explanation
Indices: 16427978--16428129 Score: 205
Period size: 65 Copynumber: 2.4 Consensus size: 64
16427968 AACCAGCCAT
* * * * *
16427978 GCAATACTTAAAAACTAGTCATGCAATACCCAAAGTTAGTCACGTAATACTTAAAAATTAGTTAC
1 GCAATACTTAAAAACTAGTCACGCAATACCCAAAGTCAGTCACATAATA-TCAAAAATCAGTTAC
* * * * *
16428043 GCAATGCTTAAAAACTAGTTACGCAATGCCCAAAGTCAGTCACATAATATCCAAAGTCAGTTAC
1 GCAATACTTAAAAACTAGTCACGCAATACCCAAAGTCAGTCACATAATATCAAAAATCAGTTAC
16428107 GCAATACTTAAAAACTAGTCACG
1 GCAATACTTAAAAACTAGTCACG
16428130 TAATGCTTAA
Statistics
Matches: 75, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
64 32 0.43
65 43 0.57
ACGTcount: A:0.41, C:0.21, G:0.12, T:0.25
Consensus pattern (64 bp):
GCAATACTTAAAAACTAGTCACGCAATACCCAAAGTCAGTCACATAATATCAAAAATCAGTTAC
Found at i:16428112 original size:21 final size:21
Alignment explanation
Indices: 16428059--16428113 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
16428049 CTTAAAAACT
*
16428059 AGTTACGCAATGCCCAAAGTC
1 AGTTACGCAATACCCAAAGTC
* ** *
16428080 AGTCACATAATATCCAAAGTC
1 AGTTACGCAATACCCAAAGTC
16428101 AGTTACGCAATAC
1 AGTTACGCAATAC
16428114 TTAAAAACTA
Statistics
Matches: 25, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.38, C:0.25, G:0.15, T:0.22
Consensus pattern (21 bp):
AGTTACGCAATACCCAAAGTC
Found at i:16432185 original size:6 final size:6
Alignment explanation
Indices: 16432176--16432200 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
16432166 AAAAATTAAA
16432176 AAAAAT AAAAAT AAAAAT AAAAAT A
1 AAAAAT AAAAAT AAAAAT AAAAAT A
16432201 GGTAAGCACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:16442868 original size:39 final size:40
Alignment explanation
Indices: 16442812--16442894 Score: 132
Period size: 39 Copynumber: 2.1 Consensus size: 40
16442802 TTTTTAATAG
* *
16442812 AAAGGTTATTAGGTATAACTTTTTTATAGTTGTACTAT-A
1 AAAGGTTATTAGATATAACTTTGTTATAGTTGTACTATGA
*
16442851 AAAGGTTATTAGATATAACTTTGTTATAGTTGTATTATGA
1 AAAGGTTATTAGATATAACTTTGTTATAGTTGTACTATGA
16442891 AAAG
1 AAAG
16442895 AAATAACTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
39 35 0.88
40 5 0.12
ACGTcount: A:0.36, C:0.04, G:0.17, T:0.43
Consensus pattern (40 bp):
AAAGGTTATTAGATATAACTTTGTTATAGTTGTACTATGA
Found at i:16443127 original size:20 final size:21
Alignment explanation
Indices: 16443098--16443138 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
16443088 GTCATACTCC
16443098 TCTTTCTTCTCAAA-ATTTCT
1 TCTTTCTTCTCAAATATTTCT
*
16443118 TCTTTGTTCTCAAATATTTCT
1 TCTTTCTTCTCAAATATTTCT
16443139 AACATTGACA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.20, C:0.22, G:0.02, T:0.56
Consensus pattern (21 bp):
TCTTTCTTCTCAAATATTTCT
Found at i:16444515 original size:2 final size:2
Alignment explanation
Indices: 16444508--16444541 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
16444498 GATAAAATGA
16444508 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
16444542 TCTTTGCTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:16447297 original size:13 final size:13
Alignment explanation
Indices: 16447279--16447303 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16447269 TTTCAGAATA
16447279 TTTATAAAATCAT
1 TTTATAAAATCAT
16447292 TTTATAAAATCA
1 TTTATAAAATCA
16447304 CAATTTCTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTATAAAATCAT
Found at i:16448495 original size:28 final size:28
Alignment explanation
Indices: 16448442--16448494 Score: 83
Period size: 28 Copynumber: 1.9 Consensus size: 28
16448432 TGGAAAAATG
16448442 CTCTGGAGGTGCAAAATTACCATTTTAC
1 CTCTGGAGGTGCAAAATTACCATTTTAC
16448470 CTCTGG-GGTGGCAAAATTA-CATTTT
1 CTCTGGAGGT-GCAAAATTACCATTTT
16448495 TGCCCCAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
27 9 0.38
28 15 0.62
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (28 bp):
CTCTGGAGGTGCAAAATTACCATTTTAC
Found at i:16448705 original size:19 final size:19
Alignment explanation
Indices: 16448681--16448718 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
16448671 CTGCCAAACC
*
16448681 CTCAAATTATACTCCAATA
1 CTCAAATCATACTCCAATA
16448700 CTCAAATCATACTCCAATA
1 CTCAAATCATACTCCAATA
16448719 AGTTAAATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.29, G:0.00, T:0.29
Consensus pattern (19 bp):
CTCAAATCATACTCCAATA
Found at i:16451264 original size:15 final size:14
Alignment explanation
Indices: 16451231--16451273 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
16451221 CTTATAACAA
* *
16451231 CTTTAAAACCAAAAA
1 CTTTAAAATC-AAAG
16451246 CTTTAAAATTCAAAG
1 CTTTAAAA-TCAAAG
16451261 CTTTAAAATCAAA
1 CTTTAAAATCAAA
16451274 ATCTCTGATC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 5 0.20
15 19 0.76
16 1 0.04
ACGTcount: A:0.53, C:0.16, G:0.02, T:0.28
Consensus pattern (14 bp):
CTTTAAAATCAAAG
Found at i:16452492 original size:13 final size:13
Alignment explanation
Indices: 16452474--16452498 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16452464 TTCCAGAATA
16452474 TTTATAAAATCAT
1 TTTATAAAATCAT
16452487 TTTATAAAATCA
1 TTTATAAAATCA
16452499 CAATTTCTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTATAAAATCAT
Found at i:16460082 original size:48 final size:48
Alignment explanation
Indices: 16460028--16460148 Score: 136
Period size: 48 Copynumber: 2.5 Consensus size: 48
16460018 AGAATAGCGG
* *
16460028 ACTTAGTCTTTTTATGTCATTAGTTTGGCCCAGAATGAAGAATATTAA
1 ACTTAGTCTTTTTATGTCATTAGTTTGGCCCAGAATAAACAATATTAA
* * * ** *
16460076 ATTTAGTCTTTTTAAGTTATTAGTTTGGGTCAGAATAAACAATATTGA
1 ACTTAGTCTTTTTATGTCATTAGTTTGGCCCAGAATAAACAATATTAA
* * *
16460124 GCTTAGT-TATTTATGACATTAGTTT
1 ACTTAGTCTTTTTATGTCATTAGTTT
16460149 AAGCTAGAAT
Statistics
Matches: 59, Mismatches: 14, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
47 14 0.24
48 45 0.76
ACGTcount: A:0.31, C:0.09, G:0.17, T:0.44
Consensus pattern (48 bp):
ACTTAGTCTTTTTATGTCATTAGTTTGGCCCAGAATAAACAATATTAA
Found at i:16460212 original size:48 final size:47
Alignment explanation
Indices: 16460086--16460247 Score: 157
Period size: 48 Copynumber: 3.4 Consensus size: 47
16460076 ATTTAGTCTT
* ** * *
16460086 TTTAAGTTATTAGTTTGGGTCAGAATAAACAATATTGAGCTTAGTTA
1 TTTATGTTATTAGTTTGGAACAGAATAAACAATATTGGGCTTAATTA
** * * *
16460133 TTTATGACATTAGTTT--AAGCTAGAATGAACAATGTTGGGCTCAATATA
1 TTTATGTTATTAGTTTGGAA-C-AGAATAAACAATATTGGGCTTAAT-TA
*
16460181 TTTATGTTATTAGTTTGGAACAAAATAAACAATATTGGGCTTAATTAA
1 TTTATGTTATTAGTTTGGAACAGAATAAACAATATTGGGCTTAATT-A
* *
16460229 TTTATGCTATTTGTTTGGA
1 TTTATGTTATTAGTTTGGA
16460248 CATATTGACT
Statistics
Matches: 91, Mismatches: 18, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
46 1 0.01
47 33 0.36
48 54 0.59
49 1 0.01
50 2 0.02
ACGTcount: A:0.34, C:0.07, G:0.18, T:0.41
Consensus pattern (47 bp):
TTTATGTTATTAGTTTGGAACAGAATAAACAATATTGGGCTTAATTA
Found at i:16462630 original size:19 final size:19
Alignment explanation
Indices: 16462606--16462642 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
16462596 CCATTTGACT
* *
16462606 TATTGGAGTATTATTTGAG
1 TATTGGAATATGATTTGAG
16462625 TATTGGAATATGATTTGA
1 TATTGGAATATGATTTGA
16462643 AGTTTAAAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.24, T:0.46
Consensus pattern (19 bp):
TATTGGAATATGATTTGAG
Found at i:16463903 original size:13 final size:13
Alignment explanation
Indices: 16463885--16463909 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16463875 GGAGAAATTG
16463885 TGATTTTATAAAA
1 TGATTTTATAAAA
16463898 TGATTTTATAAA
1 TGATTTTATAAA
16463910 TTTTCTGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:16465669 original size:22 final size:24
Alignment explanation
Indices: 16465619--16465679 Score: 83
Period size: 22 Copynumber: 2.6 Consensus size: 24
16465609 AACTCGTAAA
16465619 AAAGGAAAAGCTTGAAGAACTCGTG
1 AAAGGAAAAGCTTG-AGAACTCGTG
16465644 -AAGGAAAAGCTTG-GAACTC-TG
1 AAAGGAAAAGCTTGAGAACTCGTG
*
16465665 AAAGGAAAGGCTTGA
1 AAAGGAAAAGCTTGA
16465680 CATTTGCTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
21 2 0.06
22 18 0.55
24 13 0.39
ACGTcount: A:0.43, C:0.11, G:0.30, T:0.16
Consensus pattern (24 bp):
AAAGGAAAAGCTTGAGAACTCGTG
Found at i:16465987 original size:2 final size:2
Alignment explanation
Indices: 16465982--16466009 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
16465972 ACATACATCC
16465982 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
16466010 NNNNNNNNNN
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:16474087 original size:34 final size:34
Alignment explanation
Indices: 16474065--16474144 Score: 74
Period size: 34 Copynumber: 2.4 Consensus size: 34
16474055 TTATTTTTTA
*
16474065 TTATAATATTATATATTTTA-TTTTTATTTTTTTA
1 TTATAATATTATATATTATATTTTTTA-TTTTTTA
* * * * *
16474099 ATATAATTTTTTATATTATATATTTTA-TTTTAA
1 TTATAATATTATATATTATATTTTTTATTTTTTA
*
16474132 TTATAACATTATA
1 TTATAATATTATA
16474145 AAATATTTTT
Statistics
Matches: 35, Mismatches: 10, Indels: 3
0.73 0.21 0.06
Matches are distributed among these distances:
33 14 0.40
34 16 0.46
35 5 0.14
ACGTcount: A:0.35, C:0.01, G:0.00, T:0.64
Consensus pattern (34 bp):
TTATAATATTATATATTATATTTTTTATTTTTTA
Found at i:16474097 original size:56 final size:61
Alignment explanation
Indices: 16473993--16474112 Score: 146
Period size: 63 Copynumber: 2.0 Consensus size: 61
16473983 AATATACATG
* *
16473993 TATTTTTTATTATTAATTTTTATATAATATTATTTTTTAATATATTTTTAATGTCATATTTTT
1 TATTTTTTATTATTAATTATTATATAATATTATTTTTTAATATATTTTTAATAT-A-ATTTTT
*
16474056 TATTTTTTATTA-TAA-TATTATAT-ATTTTA-TTTTT-AT-T-TTTTTAATATAATTTTT
1 TATTTTTTATTATTAATTATTATATAATATTATTTTTTAATATATTTTTAATATAATTTTT
16474110 TAT
1 TAT
16474113 ATTATATATT
Statistics
Matches: 54, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
54 9 0.17
55 1 0.02
56 9 0.17
57 1 0.02
58 2 0.04
59 5 0.09
60 5 0.09
61 7 0.13
62 3 0.06
63 12 0.22
ACGTcount: A:0.30, C:0.01, G:0.01, T:0.68
Consensus pattern (61 bp):
TATTTTTTATTATTAATTATTATATAATATTATTTTTTAATATATTTTTAATATAATTTTT
Found at i:16474110 original size:27 final size:28
Alignment explanation
Indices: 16473993--16474124 Score: 105
Period size: 27 Copynumber: 4.8 Consensus size: 28
16473983 AATATACATG
*
16473993 TATTTTTTATTATTA-ATTTTT-ATATAA
1 TATTTTTTATTTTTATATTTTTAATAT-A
** *
16474020 TATTATTTT-TTAATATATTTTTAATGTCA
1 TATT-TTTTATTTTTATATTTTTAATAT-A
*
16474049 TATTTTTTATTTTT-TA-TTATAATATTA
1 TATTTTTTATTTTTATATTTTTAATA-TA
* *
16474076 TATATTTTATTTTTATTTTTTTAATATA
1 TATTTTTTATTTTTATATTTTTAATATA
*
16474104 -ATTTTTTATATTATATATTTT
1 TATTTTTTAT-TTTTATATTTT
16474125 ATTTTAATTA
Statistics
Matches: 84, Mismatches: 13, Indels: 15
0.75 0.12 0.13
Matches are distributed among these distances:
27 37 0.44
28 29 0.35
29 18 0.21
ACGTcount: A:0.30, C:0.01, G:0.01, T:0.68
Consensus pattern (28 bp):
TATTTTTTATTTTTATATTTTTAATATA
Found at i:16490434 original size:112 final size:112
Alignment explanation
Indices: 16490237--16490460 Score: 448
Period size: 112 Copynumber: 2.0 Consensus size: 112
16490227 TGATGGTATT
16490237 GTTTGAATCAGTATCAAAAATTTTCATTCTGTTTGAGATTTTATTTTTGTATTGTAAATATATAA
1 GTTTGAATCAGTATCAAAAATTTTCATTCTGTTTGAGATTTTATTTTTGTATTGTAAATATATAA
16490302 TTGAGCAAATTTAGATCTATTTCTTATTATTGGAAGCAAAAACCTTA
66 TTGAGCAAATTTAGATCTATTTCTTATTATTGGAAGCAAAAACCTTA
16490349 GTTTGAATCAGTATCAAAAATTTTCATTCTGTTTGAGATTTTATTTTTGTATTGTAAATATATAA
1 GTTTGAATCAGTATCAAAAATTTTCATTCTGTTTGAGATTTTATTTTTGTATTGTAAATATATAA
16490414 TTGAGCAAATTTAGATCTATTTCTTATTATTGGAAGCAAAAACCTTA
66 TTGAGCAAATTTAGATCTATTTCTTATTATTGGAAGCAAAAACCTTA
16490461 TTCTATGATG
Statistics
Matches: 112, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
112 112 1.00
ACGTcount: A:0.34, C:0.09, G:0.12, T:0.45
Consensus pattern (112 bp):
GTTTGAATCAGTATCAAAAATTTTCATTCTGTTTGAGATTTTATTTTTGTATTGTAAATATATAA
TTGAGCAAATTTAGATCTATTTCTTATTATTGGAAGCAAAAACCTTA
Found at i:16507980 original size:19 final size:19
Alignment explanation
Indices: 16507941--16507981 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
16507931 TAGTCATGTC
*
16507941 ATTTTTTGTTTTTTATATA
1 ATTTTTTGATTTTTATATA
16507960 ATTTTATTGATTTTTAT-TA
1 ATTTT-TTGATTTTTATATA
16507979 ATT
1 ATT
16507982 AATAATCATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (19 bp):
ATTTTTTGATTTTTATATA
Found at i:16508699 original size:20 final size:20
Alignment explanation
Indices: 16508674--16508743 Score: 113
Period size: 20 Copynumber: 3.5 Consensus size: 20
16508664 AGATAAAAAT
*
16508674 TCTATCGATATATCATATTA
1 TCTATCGATACATCATATTA
* *
16508694 TCTATCAATACATCATATTT
1 TCTATCGATACATCATATTA
16508714 TCTATCGATACATCATATTA
1 TCTATCGATACATCATATTA
16508734 TCTATCGATA
1 TCTATCGATA
16508744 GATAAATAGC
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.34, C:0.19, G:0.04, T:0.43
Consensus pattern (20 bp):
TCTATCGATACATCATATTA
Found at i:16510290 original size:18 final size:17
Alignment explanation
Indices: 16510263--16510296 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
16510253 AAAAAACTTT
16510263 AAGAAAAATTCAAAAAAA
1 AAGAAAAATT-AAAAAAA
*
16510281 AAGAAGAATTAAAAAA
1 AAGAAAAATTAAAAAA
16510297 TAAAAAACCC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.76, C:0.03, G:0.09, T:0.12
Consensus pattern (17 bp):
AAGAAAAATTAAAAAAA
Found at i:16527715 original size:23 final size:23
Alignment explanation
Indices: 16527660--16527722 Score: 76
Period size: 23 Copynumber: 2.8 Consensus size: 23
16527650 ATAATCTATA
*
16527660 ATTTAATTAAAATATTAAATATT
1 ATTTAATTAAAATATTATATATT
* *
16527683 A-ATAATTTAAAATATTATATTTT
1 ATTTAA-TTAAAATATTATATATT
16527706 ATTTAATT-AAATATTAT
1 ATTTAATTAAAATATTAT
16527723 TATGATTAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
22 12 0.35
23 19 0.56
24 3 0.09
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (23 bp):
ATTTAATTAAAATATTATATATT
Found at i:16527774 original size:41 final size:40
Alignment explanation
Indices: 16527695--16527775 Score: 94
Period size: 41 Copynumber: 2.0 Consensus size: 40
16527685 TAATTTAAAA
*
16527695 TATTATATTTTATTTAATTAAATATTATTATGATTAATTTT
1 TATTATATTTTATTT-ATTAAATATTATAATGATTAATTTT
*
16527736 TATTTTATTTTATTT-TTAAAATATTAATAATTGA-TAATTT
1 TATTATATTTTATTTATT-AAATATT-ATAA-TGATTAATTT
16527776 CNNNNNNNNN
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
39 2 0.06
40 7 0.20
41 23 0.66
42 3 0.09
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (40 bp):
TATTATATTTTATTTATTAAATATTATAATGATTAATTTT
Found at i:16528090 original size:23 final size:22
Alignment explanation
Indices: 16528046--16528104 Score: 73
Period size: 23 Copynumber: 2.6 Consensus size: 22
16528036 TTATTTTGTT
** *
16528046 TTTAAATAGGAATAATTTATAA
1 TTTAAATATTAATAATTGATAA
*
16528068 TTTAATTTATTAATAATTGATAA
1 TTTAA-ATATTAATAATTGATAA
16528091 TTTAAATATTAATA
1 TTTAAATATTAATA
16528105 TTTTAAAATA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
22 13 0.42
23 18 0.58
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (22 bp):
TTTAAATATTAATAATTGATAA
Found at i:16528113 original size:16 final size:16
Alignment explanation
Indices: 16528094--16528125 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
16528084 TTGATAATTT
16528094 AAATATTAATATTTTA
1 AAATATTAATATTTTA
16528110 AAATATTAATATTTTA
1 AAATATTAATATTTTA
16528126 TTAAAAATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
AAATATTAATATTTTA
Found at i:16537151 original size:21 final size:21
Alignment explanation
Indices: 16537099--16537153 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 21
16537089 CCCCATTTCC
16537099 TTTCTTT-TCTTCTTTCCTCCT
1 TTTCTTTCT-TTCTTTCCTCCT
**
16537120 TTTCTCCCTTTCTTT-CTCTCT
1 TTTCTTTCTTTCTTTCCTC-CT
16537141 TTTCTTTCTTTCT
1 TTTCTTTCTTTCT
16537154 CTTTTTTGCT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
20 3 0.11
21 24 0.86
22 1 0.04
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (21 bp):
TTTCTTTCTTTCTTTCCTCCT
Found at i:16537160 original size:17 final size:17
Alignment explanation
Indices: 16537127--16537159 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
16537117 CCTTTTCTCC
16537127 CTTTCTTTCTCTCTTTT
1 CTTTCTTTCTCTCTTTT
16537144 CTTTCTTTCTCT-TTTT
1 CTTTCTTTCTCTCTTTT
16537160 TGCTATAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (17 bp):
CTTTCTTTCTCTCTTTT
Found at i:16537710 original size:29 final size:30
Alignment explanation
Indices: 16537678--16537765 Score: 137
Period size: 29 Copynumber: 3.0 Consensus size: 30
16537668 ATATTTTTAA
16537678 AGATGAGTGATAGTGGAAATTA-TTGCTAT
1 AGATGAGTGATAGTGGAAATTATTTGCTAT
*
16537707 AGATGAGTGATAGTGGAAA-TATTTTCTAT
1 AGATGAGTGATAGTGGAAATTATTTGCTAT
*
16537736 AGATGAGTGATAGTGGAAA-TATTTTCTAT
1 AGATGAGTGATAGTGGAAATTATTTGCTAT
16537765 A
1 A
16537766 AAGTGATCCA
Statistics
Matches: 57, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
28 2 0.04
29 55 0.96
ACGTcount: A:0.35, C:0.03, G:0.25, T:0.36
Consensus pattern (30 bp):
AGATGAGTGATAGTGGAAATTATTTGCTAT
Found at i:16544086 original size:16 final size:16
Alignment explanation
Indices: 16544065--16544096 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
16544055 TAAAACTGGA
16544065 GAGTTTTTGGAATTTG
1 GAGTTTTTGGAATTTG
*
16544081 GAGTTTTTGGATTTTG
1 GAGTTTTTGGAATTTG
16544097 TATTACTACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.00, G:0.31, T:0.53
Consensus pattern (16 bp):
GAGTTTTTGGAATTTG
Found at i:16550072 original size:22 final size:22
Alignment explanation
Indices: 16550030--16550072 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
16550020 TTTTTATAAT
*
16550030 AATATTTGATTTTTAATTTTAA
1 AATATTTGATTTTTAAATTTAA
16550052 AATATTT-ATTTTTATAATTTA
1 AATATTTGATTTTTA-AATTTA
16550073 TTGAAAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (22 bp):
AATATTTGATTTTTAAATTTAA
Found at i:16550153 original size:35 final size:36
Alignment explanation
Indices: 16550103--16550193 Score: 93
Period size: 32 Copynumber: 2.6 Consensus size: 36
16550093 AGAAGAATTT
*
16550103 TAATATGGTT-ATTTATTTTATTTATTAAAATATTAA
1 TAATATGATTAATTTATTTTATTT-TTAAAATATTAA
* * *
16550139 TAA-AT-TTTAATTTA--TAATTTTTAAAATATTAT
1 TAATATGATTAATTTATTTTATTTTTAAAATATTAA
*
16550171 TAATATGATTACTTTATTTTATT
1 TAATATGATTAATTTATTTTATT
16550194 AAAATCACAA
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
32 14 0.32
33 7 0.16
34 9 0.20
35 7 0.16
36 7 0.16
ACGTcount: A:0.38, C:0.01, G:0.03, T:0.57
Consensus pattern (36 bp):
TAATATGATTAATTTATTTTATTTTTAAAATATTAA
Found at i:16550540 original size:20 final size:18
Alignment explanation
Indices: 16550491--16550541 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 18
16550481 TGGGATTATA
16550491 AAAATTTATTAA-TTAATC
1 AAAA-TTATTAATTTAATC
16550509 AAAA-TATT-ATTTAATTC
1 AAAATTATTAATTTAA-TC
16550526 ATAAATTATTAATTTA
1 A-AAATTATTAATTTA
16550542 TACATCAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
15 1 0.04
16 8 0.29
17 3 0.11
18 7 0.25
19 4 0.14
20 5 0.18
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (18 bp):
AAAATTATTAATTTAATC
Found at i:16559548 original size:33 final size:33
Alignment explanation
Indices: 16559463--16559550 Score: 95
Period size: 33 Copynumber: 2.7 Consensus size: 33
16559453 ATATACCAAA
* * *
16559463 TGATGCTGATATGATATGCTAATATACAATAAT
1 TGATGATGATATGATATGTTAACATACAATAAT
* * * * **
16559496 TGATAATGATGTAACATGTTAACATATTATAAT
1 TGATGATGATATGATATGTTAACATACAATAAT
16559529 TGATGATGATATGATATGTTAA
1 TGATGATGATATGATATGTTAA
16559551 TTTAATATGA
Statistics
Matches: 42, Mismatches: 13, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
33 42 1.00
ACGTcount: A:0.40, C:0.06, G:0.16, T:0.39
Consensus pattern (33 bp):
TGATGATGATATGATATGTTAACATACAATAAT
Found at i:16566665 original size:3 final size:3
Alignment explanation
Indices: 16566659--16566695 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
16566649 TAAAAAAGAA
16566659 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
16566696 GAGGAGAAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.35, T:0.32
Consensus pattern (3 bp):
GAT
Found at i:16566706 original size:3 final size:3
Alignment explanation
Indices: 16566700--16566730 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
16566690 ATGATGGAGG
16566700 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
16566731 TTAAAAGTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:16577798 original size:2 final size:2
Alignment explanation
Indices: 16577791--16577825 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
16577781 TGAAAGGAAA
16577791 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
16577826 TTTACTTCTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:16579049 original size:14 final size:14
Alignment explanation
Indices: 16579030--16579065 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
16579020 TTATTTTTCC
16579030 TTATTAATTCTAA-T
1 TTATTAATT-TAATT
16579044 TTATTAATTTAATT
1 TTATTAATTTAATT
16579058 TTATTAAT
1 TTATTAAT
16579066 AATATACATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 3 0.14
14 18 0.86
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (14 bp):
TTATTAATTTAATT
Found at i:16596478 original size:43 final size:41
Alignment explanation
Indices: 16596415--16596502 Score: 108
Period size: 41 Copynumber: 2.1 Consensus size: 41
16596405 GCCTCTCACC
**
16596415 CTTATCTTGTTTTTTAGTACATTTTCTCATATATCTT-TCCTCT
1 CTTATCTTGTTTTTTAGTACA--AACTCATATAT-TTCTCCTCT
16596458 CTTATCTTGTTTTTGT-GTACAAACTCATATATTTCTCCTCT
1 CTTATCTTGTTTTT-TAGTACAAACTCATATATTTCTCCTCT
16596499 CTTA
1 CTTA
16596503 CCTTCTACTC
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
40 2 0.05
41 19 0.46
43 19 0.46
44 1 0.02
ACGTcount: A:0.18, C:0.22, G:0.06, T:0.55
Consensus pattern (41 bp):
CTTATCTTGTTTTTTAGTACAAACTCATATATTTCTCCTCT
Found at i:16606016 original size:2 final size:2
Alignment explanation
Indices: 16606011--16606070 Score: 113
Period size: 2 Copynumber: 30.5 Consensus size: 2
16606001 GAGAGGTTTT
16606011 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
16606053 TA TA TA T- TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA T
16606071 TTAAAAAAAC
Statistics
Matches: 57, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
1 1 0.02
2 56 0.98
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:16612025 original size:108 final size:108
Alignment explanation
Indices: 16611836--16612049 Score: 401
Period size: 108 Copynumber: 2.0 Consensus size: 108
16611826 AAAAGCATGA
*
16611836 ATCAGAAAGGTTGGCTATTCATATGAATATACACAGACAACAAACACACAGTTTGTAATGACTTC
1 ATCAGAAAGGTTGGCTATTCATATGAATATACACAGACAACAAACACACAGATTGTAATGACTTC
*
16611901 AAAGTAAGAATGCCCAGAAAGGAAATAGATCCAAAAGATATGT
66 AAAGTAAGAATACCCAGAAAGGAAATAGATCCAAAAGATATGT
*
16611944 ATCAGAAAGGTTGGCTATTTATATGAATATACACAGACAACAAACACACAGATTGTAATGACTTC
1 ATCAGAAAGGTTGGCTATTCATATGAATATACACAGACAACAAACACACAGATTGTAATGACTTC
16612009 AAAGTAAGAATACCCAGAAAGGAAATAGATCCAAAAGATAT
66 AAAGTAAGAATACCCAGAAAGGAAATAGATCCAAAAGATAT
16612050 CTGATCATAT
Statistics
Matches: 103, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
108 103 1.00
ACGTcount: A:0.46, C:0.15, G:0.17, T:0.22
Consensus pattern (108 bp):
ATCAGAAAGGTTGGCTATTCATATGAATATACACAGACAACAAACACACAGATTGTAATGACTTC
AAAGTAAGAATACCCAGAAAGGAAATAGATCCAAAAGATATGT
Found at i:16612629 original size:2 final size:2
Alignment explanation
Indices: 16612622--16612648 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
16612612 AACAGCTTCT
16612622 AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC A
16612649 TATATATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:16618984 original size:26 final size:25
Alignment explanation
Indices: 16618955--16619003 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
16618945 CTAATGAATC
16618955 ACTTTTATTCAAATTGCTTGTTTGTT
1 ACTTTTATTCAAATTGCTT-TTTGTT
* * *
16618981 ACTTTTTTTCTATTTGCTTTTTG
1 ACTTTTATTCAAATTGCTTTTTG
16619004 CTTTTGAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 4 0.20
26 16 0.80
ACGTcount: A:0.14, C:0.12, G:0.10, T:0.63
Consensus pattern (25 bp):
ACTTTTATTCAAATTGCTTTTTGTT
Found at i:16621373 original size:22 final size:22
Alignment explanation
Indices: 16621334--16621380 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
16621324 AATTGATTAT
* **
16621334 ACTGGTTTTTAAGTATTACAAG
1 ACTGATTTTTAAACATTACAAG
*
16621356 ACTGATTTTTAAACATTACATG
1 ACTGATTTTTAAACATTACAAG
16621378 ACT
1 ACT
16621381 TAATCATTGC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.40
Consensus pattern (22 bp):
ACTGATTTTTAAACATTACAAG
Found at i:16621445 original size:21 final size:21
Alignment explanation
Indices: 16621385--16621445 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 21
16621375 ATGACTTAAT
* *
16621385 CATTGCGTAACTGGCTTTTAGG
1 CATTGCGTGACT-GATTTTAGG
* * * *
16621407 TATTACGTGATTGGTTTTAGG
1 CATTGCGTGACTGATTTTAGG
16621428 CATTGCGTGACTGATTTT
1 CATTGCGTGACTGATTTT
16621446 TAAGTAATGC
Statistics
Matches: 30, Mismatches: 9, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
21 22 0.73
22 8 0.27
ACGTcount: A:0.18, C:0.13, G:0.26, T:0.43
Consensus pattern (21 bp):
CATTGCGTGACTGATTTTAGG
Found at i:16621501 original size:23 final size:23
Alignment explanation
Indices: 16621475--16621566 Score: 98
Period size: 23 Copynumber: 4.0 Consensus size: 23
16621465 ACAATACTTG
* * *
16621475 ACTAACTAGTTACGCAATGTCTT
1 ACTAACAAGTCACGCAATGCCTT
*
16621498 ACTAACAAGTCACGTAATGCCTT
1 ACTAACAAGTCACGCAATGCCTT
*
16621521 ACTAACAAGTCACGTAATGCC-T
1 ACTAACAAGTCACGCAATGCCTT
* *
16621543 A-TCAACTAGTCACTCAATGCCTT
1 ACT-AACAAGTCACGCAATGCCTT
16621566 A
1 A
16621567 TCAAAAACTA
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
21 1 0.02
22 17 0.28
23 42 0.70
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.28
Consensus pattern (23 bp):
ACTAACAAGTCACGCAATGCCTT
Found at i:16621561 original size:22 final size:22
Alignment explanation
Indices: 16621536--16621629 Score: 84
Period size: 22 Copynumber: 4.1 Consensus size: 22
16621526 CAAGTCACGT
*
16621536 AATGCCTATCAACTAGTCACTC
1 AATGCCTATCAACTAGTCACAC
16621558 AATGCCTTATCAAAAACTAGTCACAC
1 AATGCC-TATC---AACTAGTCACAC
* * *
16621584 AATACCTA--AAGTCAGTCACGC
1 AATGCCTATCAACT-AGTCACAC
*
16621605 AATGCCTATCAACCAGTCACAC
1 AATGCCTATCAACTAGTCACAC
16621627 AAT
1 AAT
16621630 ACCTTATTAG
Statistics
Matches: 57, Mismatches: 8, Indels: 14
0.72 0.10 0.18
Matches are distributed among these distances:
20 3 0.05
21 14 0.25
22 16 0.28
23 6 0.11
25 2 0.04
26 16 0.28
ACGTcount: A:0.38, C:0.30, G:0.10, T:0.22
Consensus pattern (22 bp):
AATGCCTATCAACTAGTCACAC
Found at i:16621575 original size:26 final size:26
Alignment explanation
Indices: 16621546--16621685 Score: 100
Period size: 26 Copynumber: 5.7 Consensus size: 26
16621536 AATGCCTATC
*
16621546 AACTAGTCACTCAATGCCTTATCAAA
1 AACTAGTCACACAATGCCTTATCAAA
*
16621572 AACTAGTCACACAATACC---T-AAA
1 AACTAGTCACACAATGCCTTATCAAA
** *
16621594 GTC-AGTCACGCAATGCC-TATC---
1 AACTAGTCACACAATGCCTTATCAAA
* * * *
16621615 AACCAGTCACACAATACCTTATTAGA
1 AACTAGTCACACAATGCCTTATCAAA
* *
16621641 AATTAGTCACGCAATGCCTTATCAAA
1 AACTAGTCACACAATGCCTTATCAAA
**
16621667 AACTAGTCACGTAATGCCT
1 AACTAGTCACACAATGCCT
16621686 AAAAAATAGT
Statistics
Matches: 87, Mismatches: 19, Indels: 16
0.71 0.16 0.13
Matches are distributed among these distances:
21 13 0.15
22 16 0.18
23 5 0.06
26 53 0.61
ACGTcount: A:0.38, C:0.27, G:0.11, T:0.24
Consensus pattern (26 bp):
AACTAGTCACACAATGCCTTATCAAA
Found at i:16621602 original size:21 final size:21
Alignment explanation
Indices: 16621576--16621633 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 21
16621566 ATCAAAAACT
*
16621576 AGTCACACAATACCTA-AAGTC
1 AGTCACACAATACCTACAA-CC
* *
16621597 AGTCACGCAATGCCTATCAACC
1 AGTCACACAATACCTA-CAACC
16621619 AGTCACACAATACCT
1 AGTCACACAATACCT
16621634 TATTAGAAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
21 14 0.47
22 14 0.47
23 2 0.07
ACGTcount: A:0.38, C:0.33, G:0.10, T:0.19
Consensus pattern (21 bp):
AGTCACACAATACCTACAACC
Found at i:16621695 original size:22 final size:23
Alignment explanation
Indices: 16621505--16621712 Score: 77
Period size: 26 Copynumber: 8.9 Consensus size: 23
16621495 CTTACTAACA
* ** *
16621505 AGTCACGTAATGCCTTACTAACA
1 AGTCACGTAATGCCTAAAAAACT
**
16621528 AGTCACGTAATGCCT-ATCAACT
1 AGTCACGTAATGCCTAAAAAACT
16621550 AGTCAC-TCAATGCCTTATCAAAAACT
1 AGTCACGT-AATGCC-TA--AAAAACT
** * **
16621576 AGTCACACAATACCT-AAAGTC-
1 AGTCACGTAATGCCTAAAAAACT
* ** *
16621597 AGTCACGCAATGCCT-ATCAACC
1 AGTCACGTAATGCCTAAAAAACT
** * * *
16621619 AGTCACACAATACCTTATTAGAAATT
1 AGTCACGTAATGCC-TA--AAAAACT
*
16621645 AGTCACGCAATGCCTTATCAAAAACT
1 AGTCACGTAATGCC-TA--AAAAACT
16621671 AGTCACGTAATGCCTAAAAAA-T
1 AGTCACGTAATGCCTAAAAAACT
* *
16621693 AGTCACGTAATTCCCAAAAA
1 AGTCACGTAATGCCTAAAAA
16621713 TCACCAAAAC
Statistics
Matches: 145, Mismatches: 29, Indels: 23
0.74 0.15 0.12
Matches are distributed among these distances:
21 16 0.11
22 51 0.35
23 22 0.15
25 3 0.02
26 53 0.37
ACGTcount: A:0.39, C:0.26, G:0.11, T:0.24
Consensus pattern (23 bp):
AGTCACGTAATGCCTAAAAAACT
Found at i:16621712 original size:23 final size:22
Alignment explanation
Indices: 16621664--16621712 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
16621654 ATGCCTTATC
* * *
16621664 AAAAACTAGTCACGTAATGCCT
1 AAAAAATAGTCACGTAATCCCA
16621686 AAAAAATAGTCACGTAATTCCCA
1 AAAAAATAGTCACGTAA-TCCCA
16621709 AAAA
1 AAAA
16621713 TCACCAAAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 16 0.70
23 7 0.30
ACGTcount: A:0.49, C:0.20, G:0.10, T:0.20
Consensus pattern (22 bp):
AAAAAATAGTCACGTAATCCCA
Found at i:16621926 original size:50 final size:50
Alignment explanation
Indices: 16621801--16621926 Score: 128
Period size: 50 Copynumber: 2.5 Consensus size: 50
16621791 AACGAATATG
* * *
16621801 AATGCTTAAAATG-TTCAAAAGTTTTTCTTCATATATCAAAAATTACTCTAA
1 AATGCTCAAAATGCTT-AAAAG-TTTTCTTCATATATCAAAAACTACTCCAA
* * * * * * *
16621852 AATACTCAAAACGCTCACAGGTTTTCTTCGTGTATCAAAAACTACTCCAA
1 AATGCTCAAAATGCTTAAAAGTTTTCTTCATATATCAAAAACTACTCCAA
*
16621902 AATGCTCAAAATGCTTAAACGTTTT
1 AATGCTCAAAATGCTTAAAAGTTTT
16621927 TCTTTCTGGT
Statistics
Matches: 59, Mismatches: 15, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
50 45 0.76
51 13 0.22
52 1 0.02
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.34
Consensus pattern (50 bp):
AATGCTCAAAATGCTTAAAAGTTTTCTTCATATATCAAAAACTACTCCAA
Found at i:16628468 original size:39 final size:38
Alignment explanation
Indices: 16628349--16628484 Score: 112
Period size: 39 Copynumber: 3.5 Consensus size: 38
16628339 CTCTTGATGT
* * * * * * *
16628349 TACTTGCAACATTTCCTCTTTTAGAGGTGTTCCGAATGC
1 TACTTGCAATACTTCTTCTTTT-GGGGTGTTTCAAATAC
* * *
16628388 TACTCGCAATACTTATTCTTTTGGGGTGTTTCGAATAC
1 TACTTGCAATACTTCTTCTTTTGGGGTGTTTCAAATAC
* *
16628426 TACTTGCAATGCTTCTTCTTTTGGTGGTG-TTCTAAATTC
1 TACTTGCAATACTTCTTCTTTTGG-GGTGTTTC-AAATAC
* *
16628465 TACTTGTAATTCTTCTTCTT
1 TACTTGCAATACTTCTTCTT
16628485 CTATTGGGGA
Statistics
Matches: 80, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
38 37 0.46
39 43 0.54
ACGTcount: A:0.18, C:0.20, G:0.16, T:0.46
Consensus pattern (38 bp):
TACTTGCAATACTTCTTCTTTTGGGGTGTTTCAAATAC
Found at i:16628499 original size:42 final size:42
Alignment explanation
Indices: 16628421--16628525 Score: 110
Period size: 42 Copynumber: 2.6 Consensus size: 42
16628411 GGGTGTTTCG
* *
16628421 AATACTACTTGCAATGCTTCTTC-T-T-TTGGTGGTGTTCTA
1 AATACTACTTACAATTCTTCTTCTTCTATTGGTGGTGTTCTA
* ** *
16628460 AATTCTACTTGTAATTCTTCTTCTTCTATTGG-GGATGTTCTG
1 AATACTACTTACAATTCTTCTTCTTCTATTGGTGG-TGTTCTA
*
16628502 AATACTACTTACAATTCTTTTTCT
1 AATACTACTTACAATTCTTCTTCT
16628526 CCTTCTGAGG
Statistics
Matches: 54, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
39 20 0.37
40 1 0.02
41 3 0.06
42 30 0.56
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (42 bp):
AATACTACTTACAATTCTTCTTCTTCTATTGGTGGTGTTCTA
Found at i:16628520 original size:39 final size:38
Alignment explanation
Indices: 16628365--16628525 Score: 144
Period size: 38 Copynumber: 4.1 Consensus size: 38
16628355 CAACATTTCC
* * * * * *
16628365 TCTTTTAGAGGTGTTCCGAATGCTACTCGCAATACTTAT
1 TCTTTT-GGGGTGTTCTGAATACTACTTGCAATTCTTCT
*
16628404 TCTTTTGGGGTGTT-TCGAATACTACTTGCAATGCTTCT
1 TCTTTTGGGGTGTTCT-GAATACTACTTGCAATTCTTCT
* * *
16628442 TCTTTTGGTGGTGTTCTAAATTCTACTTGTAATTCTTCT
1 TCTTTTGG-GGTGTTCTGAATACTACTTGCAATTCTTCT
* *
16628481 TCTTCTATTGGGGATGTTCTGAATACTACTTACAATTCTTTT
1 TC-T-T-TTGGGG-TGTTCTGAATACTACTTGCAATTCTTCT
16628523 TCT
1 TCT
16628526 CCTTCTGAGG
Statistics
Matches: 100, Mismatches: 15, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
38 33 0.33
39 32 0.32
40 2 0.02
41 4 0.04
42 29 0.29
ACGTcount: A:0.19, C:0.18, G:0.17, T:0.47
Consensus pattern (38 bp):
TCTTTTGGGGTGTTCTGAATACTACTTGCAATTCTTCT
Found at i:16633105 original size:29 final size:28
Alignment explanation
Indices: 16633033--16633123 Score: 146
Period size: 28 Copynumber: 3.2 Consensus size: 28
16633023 GAAGTGACGG
*
16633033 CATGATTTCTTATCTAAATTAAGACAAA
1 CATGTTTTCTTATCTAAATTAAGACAAA
*
16633061 CATGTTTTCTTATCTAAATTAAGATATAA
1 CATGTTTTCTTATCTAAATTAAGACA-AA
*
16633090 CATGTTTTCTTGTCTAAATTAAGACAAA
1 CATGTTTTCTTATCTAAATTAAGACAAA
16633118 CATGTT
1 CATGTT
16633124 AAAGCTGTTA
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
28 32 0.55
29 26 0.45
ACGTcount: A:0.37, C:0.13, G:0.09, T:0.41
Consensus pattern (28 bp):
CATGTTTTCTTATCTAAATTAAGACAAA
Found at i:16634291 original size:23 final size:23
Alignment explanation
Indices: 16634261--16634308 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
16634251 CAAGTGGCCG
*
16634261 TCTACAACCTTAGAATCAATGCT
1 TCTACAACCCTAGAATCAATGCT
16634284 TCTACAACCCTAGAATCAATGCT
1 TCTACAACCCTAGAATCAATGCT
16634307 TC
1 TC
16634309 CTACTCTGCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.33, C:0.29, G:0.08, T:0.29
Consensus pattern (23 bp):
TCTACAACCCTAGAATCAATGCT
Found at i:16644065 original size:38 final size:39
Alignment explanation
Indices: 16644022--16644127 Score: 124
Period size: 38 Copynumber: 2.7 Consensus size: 39
16644012 ATAGTGTTCG
* * *
16644022 TGTGCACGATGTGGGGGGATGTACATGATGGCACTAAC-
1 TGTGCACGATGTGGGGGGATGCACATGATGACACCAACA
* * * *
16644060 TGTGCACTATGTGGGGGGATGCACACGATGACTCCGACTA
1 TGTGCACGATGTGGGGGGATGCACATGATGACACCAAC-A
*
16644100 TGTGCACGATATGGGGGGATGCACATGA
1 TGTGCACGATGTGGGGGGATGCACATGA
16644128 GCTGGATAAG
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
38 31 0.55
40 25 0.45
ACGTcount: A:0.24, C:0.18, G:0.36, T:0.23
Consensus pattern (39 bp):
TGTGCACGATGTGGGGGGATGCACATGATGACACCAACA
Done.