Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr4
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 31929104
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 1434590 characters in sequence are not A, C, G, or T
File 58 of 82
Found at i:20987589 original size:64 final size:64
Alignment explanation
Indices: 20987468--20987590 Score: 140
Period size: 64 Copynumber: 1.9 Consensus size: 64
20987458 GGTCTTGACA
* * ***
20987468 TGTAACATCTGGTACTGAAGCTTTGACCTTGGCATGTAAAATTTTTCACTTTGGCTTTGGTGCG
1 TGTAACATCTGGTACTCAAGCTTTGACCTTGGCATGTAAAATTTGTCACTAAAGCTTTGGTGCG
* * ** *
20987532 TGTAACATTTGGTGCTCAAGCTTTGGTCTTGGCATGTAACATTTGGT-ACTAAAGCTTTG
1 TGTAACATCTGGTACTCAAGCTTTGACCTTGGCATGTAAAATTT-GTCACTAAAGCTTTG
20987591 ACCTTGGCGC
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
64 47 0.98
65 1 0.02
ACGTcount: A:0.21, C:0.16, G:0.24, T:0.39
Consensus pattern (64 bp):
TGTAACATCTGGTACTCAAGCTTTGACCTTGGCATGTAAAATTTGTCACTAAAGCTTTGGTGCG
Found at i:20987625 original size:98 final size:96
Alignment explanation
Indices: 20987425--20987635 Score: 237
Period size: 98 Copynumber: 2.2 Consensus size: 96
20987415 AGTGATTCAT
* ** * * *
20987425 GCTTTGGTGTGCAACGCTTGATGCTAAAGTTTTGGTCTTGACATGTAACATCTGGTACTGAAGCT
1 GCTTTGGTGTGTAACATTTGGTGCTAAAGCTTTGGTCTTGACATGTAACATCTGGTACTAAAGCT
* * *
20987490 TTGACCTTGGCATGTAAAATTTTTCACTTTG
66 TTGACCTTGGCACGTAAAATTTTACACGTTG
* * *
20987521 GCTTTGGTGCGTGTAACATTTGGTGCTCAAGCTTTGGTCTTGGCATGTAACATTTGGTACTAAAG
1 GCTTTGGT--GTGTAACATTTGGTGCTAAAGCTTTGGTCTTGACATGTAACATCTGGTACTAAAG
* *
20987586 CTTTGACCTTGGCGCGTAACA-TTTAC-CGTTG
64 CTTTGACCTTGGCACGTAAAATTTTACACGTTG
*
20987617 AAGTTTTGGTGTGTAACAT
1 --GCTTTGGTGTGTAACAT
20987636 CTTCTACTTT
Statistics
Matches: 96, Mismatches: 15, Indels: 8
0.81 0.13 0.07
Matches are distributed among these distances:
96 21 0.22
97 4 0.04
98 71 0.74
ACGTcount: A:0.21, C:0.17, G:0.25, T:0.38
Consensus pattern (96 bp):
GCTTTGGTGTGTAACATTTGGTGCTAAAGCTTTGGTCTTGACATGTAACATCTGGTACTAAAGCT
TTGACCTTGGCACGTAAAATTTTACACGTTG
Found at i:20988633 original size:14 final size:15
Alignment explanation
Indices: 20988616--20988644 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
20988606 TTAAAATTAA
20988616 AAAATAA-TTATTTT
1 AAAATAACTTATTTT
20988630 AAAATAACTTATTTT
1 AAAATAACTTATTTT
20988645 TTAAGAGTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (15 bp):
AAAATAACTTATTTT
Found at i:20991578 original size:22 final size:22
Alignment explanation
Indices: 20991537--20991632 Score: 95
Period size: 22 Copynumber: 4.4 Consensus size: 22
20991527 GCGTCTCTAG
* ** *
20991537 TTTTTAGACATTGTATGACTGG
1 TTTTTAGGCATTGCGTGACTGA
* *
20991559 TTTTTAGGCATTACGCGACTGA
1 TTTTTAGGCATTGCGTGACTGA
20991581 TTTTTAGGCATTGCGTGACT-A
1 TTTTTAGGCATTGCGTGACTGA
* * *
20991602 GGTTGTAGGCATTGTGTGACTGA
1 -TTTTTAGGCATTGCGTGACTGA
20991625 TTTTTAGG
1 TTTTTAGG
20991633 TAATGCCTAA
Statistics
Matches: 59, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
21 1 0.02
22 57 0.97
23 1 0.02
ACGTcount: A:0.20, C:0.11, G:0.27, T:0.42
Consensus pattern (22 bp):
TTTTTAGGCATTGCGTGACTGA
Found at i:20991600 original size:44 final size:44
Alignment explanation
Indices: 20991537--20991632 Score: 113
Period size: 44 Copynumber: 2.2 Consensus size: 44
20991527 GCGTCTCTAG
* * *
20991537 TTTTTAGACATTGTATGACT-GGTTTTTAGGCATTACGCGACTGA
1 TTTTTAGGCATTGCATGACTAGG-TTGTAGGCATTACGCGACTGA
* ** *
20991581 TTTTTAGGCATTGCGTGACTAGGTTGTAGGCATTGTGTGACTGA
1 TTTTTAGGCATTGCATGACTAGGTTGTAGGCATTACGCGACTGA
20991625 TTTTTAGG
1 TTTTTAGG
20991633 TAATGCCTAA
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
44 42 0.95
45 2 0.05
ACGTcount: A:0.20, C:0.11, G:0.27, T:0.42
Consensus pattern (44 bp):
TTTTTAGGCATTGCATGACTAGGTTGTAGGCATTACGCGACTGA
Found at i:20991718 original size:22 final size:22
Alignment explanation
Indices: 20991657--20991773 Score: 117
Period size: 22 Copynumber: 5.3 Consensus size: 22
20991647 CACAGTGTTG
* *
20991657 AAAAACTAGTCACACAATGCCT
1 AAAAACTAGTCACGCAATACCT
** * *
20991679 CACTAACTAATCATGCAATACCT
1 -AAAAACTAGTCACGCAATACCT
** *
20991702 ATCAACTAGTCACGCAATACTT
1 AAAAACTAGTCACGCAATACCT
*
20991724 AAAAATTAGTCACGCAATACCT
1 AAAAACTAGTCACGCAATACCT
* *
20991746 AAAAATTAGTTACGCAATACCT
1 AAAAACTAGTCACGCAATACCT
20991768 AAAAAC
1 AAAAAC
20991774 CATTTACGCA
Statistics
Matches: 77, Mismatches: 17, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
22 61 0.79
23 16 0.21
ACGTcount: A:0.44, C:0.25, G:0.08, T:0.23
Consensus pattern (22 bp):
AAAAACTAGTCACGCAATACCT
Found at i:20991780 original size:22 final size:22
Alignment explanation
Indices: 20991693--20991797 Score: 93
Period size: 22 Copynumber: 4.8 Consensus size: 22
20991683 AACTAATCAT
** * *
20991693 GCAATACCTATCAACTAGTCAC
1 GCAATACCTAAAAACCAGTTAC
* ** *
20991715 GCAATACTTAAAAATTAGTCAC
1 GCAATACCTAAAAACCAGTTAC
**
20991737 GCAATACCTAAAAATTAGTTAC
1 GCAATACCTAAAAACCAGTTAC
*
20991759 GCAATACCTAAAAACCATTTAC
1 GCAATACCTAAAAACCAGTTAC
* *
20991781 GCAATGCTTAAAAACCA
1 GCAATACCTAAAAACCA
20991798 CTAAAACTAT
Statistics
Matches: 72, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 72 1.00
ACGTcount: A:0.44, C:0.24, G:0.09, T:0.24
Consensus pattern (22 bp):
GCAATACCTAAAAACCAGTTAC
Found at i:20991783 original size:44 final size:44
Alignment explanation
Indices: 20991657--20991795 Score: 107
Period size: 44 Copynumber: 3.1 Consensus size: 44
20991647 CACAGTGTTG
* * ** * * *
20991657 AAAAACTAGTCACACAATGCCTCACTAACTAATCATGCAATACCT
1 AAAAACTAGTCACGCAATACCT-AAAAACCAGTCACGCAATACCT
** * **
20991702 ATCAACTAGTCACGCAATACTTAAAAATTAGTCACGCAATACCT
1 AAAAACTAGTCACGCAATACCTAAAAACCAGTCACGCAATACCT
* * * * * *
20991746 AAAAATTAGTTACGCAATACCTAAAAACCATTTACGCAATGCTT
1 AAAAACTAGTCACGCAATACCTAAAAACCAGTCACGCAATACCT
20991790 AAAAAC
1 AAAAAC
20991796 CACTAAAACT
Statistics
Matches: 72, Mismatches: 22, Indels: 1
0.76 0.23 0.01
Matches are distributed among these distances:
44 55 0.76
45 17 0.24
ACGTcount: A:0.44, C:0.24, G:0.08, T:0.24
Consensus pattern (44 bp):
AAAAACTAGTCACGCAATACCTAAAAACCAGTCACGCAATACCT
Found at i:20991968 original size:60 final size:60
Alignment explanation
Indices: 20991897--20992022 Score: 182
Period size: 60 Copynumber: 2.1 Consensus size: 60
20991887 TTTGAGAAAG
* * *
20991897 AATGCTTAAAAT-TCTTAAAGGTTTTTCTTAATGTATCAAAAATCACTCCAAAATACTTAA
1 AATGCTCAAAATGT-TTAAAAGTTTTTCTTAATGTATCAAAAATCACTCCAAAATACTCAA
** *
20991957 AATGCTCAAAATGTTTAAAAGTTTTTCTTCGTGTATCAAAAATCACTCCAAACTACTCAA
1 AATGCTCAAAATGTTTAAAAGTTTTTCTTAATGTATCAAAAATCACTCCAAAATACTCAA
20992017 AATGCT
1 AATGCT
20992023 TACAAGTTAT
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
60 58 0.98
61 1 0.02
ACGTcount: A:0.40, C:0.17, G:0.08, T:0.35
Consensus pattern (60 bp):
AATGCTCAAAATGTTTAAAAGTTTTTCTTAATGTATCAAAAATCACTCCAAAATACTCAA
Found at i:20993225 original size:630 final size:628
Alignment explanation
Indices: 20992012--20993875 Score: 3111
Period size: 630 Copynumber: 3.0 Consensus size: 628
20992002 CTCCAAACTA
* * *
20992012 CTCAAAATGCTTACAAGTTATTCTTTCTGACAAGAAATACTCTAGAAGTGAATGGTCTGGTGAGT
1 CTCAAAATGCTTACAAGTTTTTCTTTCTGACAAGGAATACTCTAGAAATGAATGGTCTGGTGAGT
*
20992077 AAAGGTCAAAGGATATGAGTCGGTTTGAGGCGCGGATCTAAATATATGGGTCGGTTTCATTAAGG
66 AAAGGTCAAAGGATATGAGTCGGTTTGAGGCGCGGATCTAAATATATGGGTCGGTTTTATTAAGG
* * * *
20992142 GTAATTTTTTTCAAAATTAATTTTTCTTGACTAAAAATAGTTAAAATTATAGAGAAAACTATTTT
131 GTAATTTTATCCAAAATTAATTTCTCTTGGCTAAAAATAGTTAAAATTATAGAGAAAACTATTTT
* *
20992207 CAAAAACACCTTATATATG-GGTGTATTTTTAAAATGAATCCTTAAAAAGATGTATACTTCACTA
196 CAAAAACACCTTATATATGAGGTGTATTTTTAAAATGAACCCTTAAGAAGATGTATACTTCACTA
* * *
20992271 TCTATTAATGAATGATCAAATTTGACTAAGAAAAAAAAATTATACTATACATAAAAGGAAGTTTC
261 TCTATTAATGAATGACCAGATTTGACTAAGAAAAAAAAATTATACTATATATAAAAGGAAGTTTC
* *
20992336 AACGAGACTTTCACATTTGGTCACATGGAGGTTTTAAGACGGATTGTGAAGCTTGAACAAGGCTT
326 AACGAGACTTTCACATTTGGTCACGTGGAGGTTTTAAGAGGGATTGTGAAGCTTGAACAAGGCTT
*
20992401 TCAATACGACTCTTAACGTGGACCCTAGAGGAGGAGAGTTGTGATATGTTTGATGGGTGGGCTGC
391 TCAATACGACTCTTAATGTGGACCCTAGAGGAGGAGAGTTGTGATATGTTTGATGGGTGGG-TGC
*
20992466 ATCCTGAGAAGTATAAGTTGGGCGGGTTGTGTGCAACGCACAAGTTTACCTTTAGTAATAATAAT
455 AT-CTGAGAAGTATAAGTTGGGCGGGTCGTGTGCAACGCACAAGTTTACCTTTAGTAATAATAAT
* *
20992531 ATTAACCTCACAGCAACAAGAGCTTCTTCTTTAAAGTTATAACAAATCATGTGGACAGCATCAAA
519 ATTAACCTCACAGCAACAAGAGCTTCTTCTTTAAAGTTATAACAAATCATGCGGACAACATCAAA
* *
20992596 TCCAATATCTCTTTAAAGTTATAACGAAATACCAACATCAAAATG
584 ACCAACATCTCTTTAAAGTTATAACGAAATACCAACATCAAAATG
*
20992641 CTTAAAATGCTTACAAGTTTTTCTTTCTGACAAGGAATACTCTAGAAATGAATGGTCTGGTGAGT
1 CTCAAAATGCTTACAAGTTTTTCTTTCTGACAAGGAATACTCTAGAAATGAATGGTCTGGTGAGT
* * * *
20992706 AAAGGTCAAAGGATATGAGTCGGTTTAAGGTGTGGATCTAAATATATGGGTCGGTTTTATTAAAG
66 AAAGGTCAAAGGATATGAGTCGGTTTGAGGCGCGGATCTAAATATATGGGTCGGTTTTATTAAGG
* *
20992771 GTAATTTTGTCCAAAATTAATTTCTCTTGGCTAAAAATAGTTAAAATTATAGAGAACACTATTTT
131 GTAATTTTATCCAAAATTAATTTCTCTTGGCTAAAAATAGTTAAAATTATAGAGAAAACTATTTT
*
20992836 CAAAAACACCTTATATATGAGGTGTATTTTTAAAACGAACCCTTAAGAAGATGTATACTTCACTA
196 CAAAAACACCTTATATATGAGGTGTATTTTTAAAATGAACCCTTAAGAAGATGTATACTTCACTA
*
20992901 TCTATTAATGAATGACCAGATTTGACTAAGAAAAAAAATTTATACTATATATAAAAGGAAGTTTC
261 TCTATTAATGAATGACCAGATTTGACTAAGAAAAAAAAATTATACTATATATAAAAGGAAGTTTC
* *
20992966 AATGAGACTTTCACATTTGGTCATGTGGAGGTTTTAAGAGGGATTGTGAAGCTTGAACAAGGCTT
326 AACGAGACTTTCACATTTGGTCACGTGGAGGTTTTAAGAGGGATTGTGAAGCTTGAACAAGGCTT
* *
20993031 TCAATATGACTCTTAATGTGGACCCTAGAGGAGGAAAGTTGTGATATGTTTGATGGGTGGGTTGC
391 TCAATACGACTCTTAATGTGGACCCTAGAGGAGGAGAGTTGTGATATGTTTGATGGGTGGG-TGC
20993096 ATCTTGAGAAGTATAAGTTGGGCGGGTCGTGTGCAACGCACAAGTTTACCTTTAGTAATAATAAT
455 ATC-TGAGAAGTATAAGTTGGGCGGGTCGTGTGCAACGCACAAGTTTACCTTTAGTAATAATAAT
20993161 ATTAACCTCACAGCAACAAGAGCTTCTTCTTTAAAGTTATAACAAATCATGCGGACAACATCAAA
519 ATTAACCTCACAGCAACAAGAGCTTCTTCTTTAAAGTTATAACAAATCATGCGGACAACATCAAA
20993226 ACCAACATCTCTTTAAAGTTATAACGAAATACCAACATCAAAATG
584 ACCAACATCTCTTTAAAGTTATAACGAAATACCAACATCAAAATG
* *
20993271 CTCAAAATGCTTACAAGTTTTTCTTTCTGACAAGGAATATTCTAAAAATGAATGGTCTGGTGAGT
1 CTCAAAATGCTTACAAGTTTTTCTTTCTGACAAGGAATACTCTAGAAATGAATGGTCTGGTGAGT
* * *
20993336 AAAGGTCAAAGGATATGAGTCGGTTTGAGGCACGAATCTAAATATATGGGTCAGTTTTATTAAGG
66 AAAGGTCAAAGGATATGAGTCGGTTTGAGGCGCGGATCTAAATATATGGGTCGGTTTTATTAAGG
*
20993401 GTAATTTTATCCAAAATTAATTTCTCTTGGCTAAAAATAGTCAAAATTATAGAGAAAACTATTTT
131 GTAATTTTATCCAAAATTAATTTCTCTTGGCTAAAAATAGTTAAAATTATAGAGAAAACTATTTT
20993466 CAAAAACACCTTATATATGAGGTGTATTTTTAAAATGAACCCTTAAGAAGATGTATACTTCACTA
196 CAAAAACACCTTATATATGAGGTGTATTTTTAAAATGAACCCTTAAGAAGATGTATACTTCACTA
* * *
20993531 TCTATTAATGAATGACCAGATTTGATTGAGAAAAAAAAAATTATACTATATATAAAAAGAAGTTT
261 TCTATTAATGAATGACCAGATTTGACTAAG-AAAAAAAAATTATACTATATATAAAAGGAAGTTT
* *
20993596 CAACGAGACTTTCACATTTGGTCAGGTGGAGGTTTTAAGAGGGATTGTGAAGCTTGAACAAGGTT
325 CAACGAGACTTTCACATTTGGTCACGTGGAGGTTTTAAGAGGGATTGTGAAGCTTGAACAAGGCT
*
20993661 TTCAATACGACTCTTAATGTGGACCCTAGAGGAGGAGAGTTGTGATATGTTTGCTGGGT-GG-G-
390 TTCAATACGACTCTTAATGTGGACCCTAGAGGAGGAGAGTTGTGATATGTTTGATGGGTGGGTGC
*
20993723 --CT-----G---CA--T---CGGGTCGTGTGCAACGCACAAGTTTACCTTTAGTAATAATAATA
455 ATCTGAGAAGTATAAGTTGGGCGGGTCGTGTGCAACGCACAAGTTTACCTTTAGTAATAATAATA
20993773 TTAACCTCACAGCAACAAGAGCTTCTTCTTTAAAGTTATAACAAATCATGCGGACAACATCAAAA
520 TTAACCTCACAGCAACAAGAGCTTCTTCTTTAAAGTTATAACAAATCATGCGGACAACATCAAAA
*
20993838 CCAACATCGCTTTAAAGTTATAACGAAATACCAA-ATCA
585 CCAACATCTCTTTAAAGTTATAACGAAATACCAACATCA
20993876 TGTAGACAAC
Statistics
Matches: 1172, Mismatches: 60, Indels: 25
0.93 0.05 0.02
Matches are distributed among these distances:
610 4 0.00
611 142 0.12
614 1 0.00
616 1 0.00
619 1 0.00
624 1 0.00
625 1 0.00
628 1 0.00
629 201 0.17
630 669 0.57
631 150 0.13
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (628 bp):
CTCAAAATGCTTACAAGTTTTTCTTTCTGACAAGGAATACTCTAGAAATGAATGGTCTGGTGAGT
AAAGGTCAAAGGATATGAGTCGGTTTGAGGCGCGGATCTAAATATATGGGTCGGTTTTATTAAGG
GTAATTTTATCCAAAATTAATTTCTCTTGGCTAAAAATAGTTAAAATTATAGAGAAAACTATTTT
CAAAAACACCTTATATATGAGGTGTATTTTTAAAATGAACCCTTAAGAAGATGTATACTTCACTA
TCTATTAATGAATGACCAGATTTGACTAAGAAAAAAAAATTATACTATATATAAAAGGAAGTTTC
AACGAGACTTTCACATTTGGTCACGTGGAGGTTTTAAGAGGGATTGTGAAGCTTGAACAAGGCTT
TCAATACGACTCTTAATGTGGACCCTAGAGGAGGAGAGTTGTGATATGTTTGATGGGTGGGTGCA
TCTGAGAAGTATAAGTTGGGCGGGTCGTGTGCAACGCACAAGTTTACCTTTAGTAATAATAATAT
TAACCTCACAGCAACAAGAGCTTCTTCTTTAAAGTTATAACAAATCATGCGGACAACATCAAAAC
CAACATCTCTTTAAAGTTATAACGAAATACCAACATCAAAATG
Found at i:20993884 original size:55 final size:55
Alignment explanation
Indices: 20993814--20993987 Score: 294
Period size: 55 Copynumber: 3.2 Consensus size: 55
20993804 AAAGTTATAA
* * *
20993814 CAAATCATGCGGACAACATCAAAACCAACATCGCTTTAAAGTTATAACGAAATAC
1 CAAATCATGCAGACAACATCAAAACCGACATCTCTTTAAAGTTATAACGAAATAC
*
20993869 CAAATCATGTAGACAACATCAAAACCGACATCTCTTTAAAGTTATAACGAAATAC
1 CAAATCATGCAGACAACATCAAAACCGACATCTCTTTAAAGTTATAACGAAATAC
* *
20993924 CAAATCATGCAGACAACATCAAAACTGACATCTCTTTAAAGTTATAACGAAATAT
1 CAAATCATGCAGACAACATCAAAACCGACATCTCTTTAAAGTTATAACGAAATAC
20993979 CAAATCATG
1 CAAATCATG
20993988 GTATAAACAA
Statistics
Matches: 112, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 112 1.00
ACGTcount: A:0.45, C:0.22, G:0.10, T:0.23
Consensus pattern (55 bp):
CAAATCATGCAGACAACATCAAAACCGACATCTCTTTAAAGTTATAACGAAATAC
Found at i:20994714 original size:29 final size:29
Alignment explanation
Indices: 20994661--20994716 Score: 71
Period size: 29 Copynumber: 1.9 Consensus size: 29
20994651 TTTGATTCAA
*
20994661 AATAAAAATATAAAAACTTGATTAAATGC
1 AATAAAAATATAAAAAATTGATTAAATGC
20994690 AATAAAAGA-ATAAAAAATT-ATTTAAAT
1 AATAAAA-ATATAAAAAATTGA-TTAAAT
20994717 TTTTTTGAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
28 1 0.04
29 22 0.92
30 1 0.04
ACGTcount: A:0.62, C:0.04, G:0.05, T:0.29
Consensus pattern (29 bp):
AATAAAAATATAAAAAATTGATTAAATGC
Found at i:20994734 original size:19 final size:19
Alignment explanation
Indices: 20994710--20994746 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
20994700 TAAAAAATTA
*
20994710 TTTAAATTTTTTTGAATAG
1 TTTAAATTTTTTTAAATAG
20994729 TTTAAATTTTTTTAAATA
1 TTTAAATTTTTTTAAATA
20994747 TTATGTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.59
Consensus pattern (19 bp):
TTTAAATTTTTTTAAATAG
Found at i:20995225 original size:113 final size:113
Alignment explanation
Indices: 20995076--20995299 Score: 394
Period size: 113 Copynumber: 2.0 Consensus size: 113
20995066 CCAAATAGGA
* * * * *
20995076 ATGGGAATCCCCTGCCCCTAGTTAGTGCCCCTATTGGTTCCCCTTCTTTAATTTAATGCTAAGTG
1 ATGGAAATCCCCTGCCCCTAGTTAGTGCCCCCATTGGTGCCCCTTCTTTAATTTAATACCAAGTG
20995141 CCTTTTAAGTTTTAATTGAATGATAAAAGTTAGGTAACGGTGTTAAGT
66 CCTTTTAAGTTTTAATTGAATGATAAAAGTTAGGTAACGGTGTTAAGT
20995189 ATGGAAATCCCCTGCCCCTAGTTAGTGCCCCCATTGGTGCCCCTTCTTTAATTTAATACCAAGTG
1 ATGGAAATCCCCTGCCCCTAGTTAGTGCCCCCATTGGTGCCCCTTCTTTAATTTAATACCAAGTG
*
20995254 CCTTTTAAGTTTTCATTGAATGATAAAAGTTAGGTAACGGTGTTAA
66 CCTTTTAAGTTTTAATTGAATGATAAAAGTTAGGTAACGGTGTTAA
20995300 ACCTTAAAGG
Statistics
Matches: 105, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
113 105 1.00
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (113 bp):
ATGGAAATCCCCTGCCCCTAGTTAGTGCCCCCATTGGTGCCCCTTCTTTAATTTAATACCAAGTG
CCTTTTAAGTTTTAATTGAATGATAAAAGTTAGGTAACGGTGTTAAGT
Found at i:20999294 original size:28 final size:27
Alignment explanation
Indices: 20999233--20999308 Score: 82
Period size: 28 Copynumber: 2.7 Consensus size: 27
20999223 AATGGATCAC
*
20999233 CCACCAAAAGTGGATGGATACTTGTAA
1 CCACCAAAAGTGGATGAATACTTGTAA
*
20999260 CTTACCAAAAGTGGATGAATACTT-TCAA
1 C-CACCAAAAGTGGATGAATACTTGT-AA
* *
20999288 TCCACCAGAAGTTGATGAATA
1 -CCACCAAAAGTGGATGAATA
20999309 ATGAAAAGAA
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
27 2 0.05
28 38 0.93
29 1 0.02
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.25
Consensus pattern (27 bp):
CCACCAAAAGTGGATGAATACTTGTAA
Found at i:21012475 original size:16 final size:17
Alignment explanation
Indices: 21012443--21012475 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
21012433 AGAAAACACT
*
21012443 AAAATCTTTTGTGAATA
1 AAAATCTTTTGTAAATA
21012460 AAAATCTTTTG-AAATA
1 AAAATCTTTTGTAAATA
21012476 TTACTATATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.45, C:0.06, G:0.09, T:0.39
Consensus pattern (17 bp):
AAAATCTTTTGTAAATA
Found at i:21013332 original size:24 final size:21
Alignment explanation
Indices: 21013298--21013348 Score: 66
Period size: 24 Copynumber: 2.3 Consensus size: 21
21013288 TGCACACGGC
*
21013298 TTCTTTGTACTTGTTTTTTTCTT
1 TTCTTTCTACTT-TTTTTTT-TT
21013321 TGTCTTTCTACTTTTTTTTTTT
1 T-TCTTTCTACTTTTTTTTTTT
21013343 TTCTTT
1 TTCTTT
21013349 TTTCTCTTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
21 5 0.19
22 3 0.12
23 8 0.31
24 10 0.38
ACGTcount: A:0.04, C:0.14, G:0.06, T:0.76
Consensus pattern (21 bp):
TTCTTTCTACTTTTTTTTTTT
Found at i:21013530 original size:25 final size:25
Alignment explanation
Indices: 21013502--21013564 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 25
21013492 ATTTATTTTA
*
21013502 AATTAAATAATT-TTTATTAAATAAT
1 AATTAAATAATTATTAATTAAA-AAT
*
21013527 AATTAATTAATTATTAATTAAAAAT
1 AATTAAATAATTATTAATTAAAAAT
*
21013552 -ATTATAT-ATTATT
1 AATTAAATAATTATT
21013565 TTATAATAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
23 6 0.18
24 5 0.15
25 14 0.42
26 8 0.24
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (25 bp):
AATTAAATAATTATTAATTAAAAAT
Found at i:21013555 original size:35 final size:33
Alignment explanation
Indices: 21013516--21013598 Score: 78
Period size: 35 Copynumber: 2.4 Consensus size: 33
21013506 AAATAATTTT
21013516 TATTAAATAATAATTAATTAAT-TATTAATTAAAAA
1 TATTAAATAATAATTAA-TAATATATTAA-T-AAAA
* * * *
21013551 TATTATATATTATTTTATAATAATATTAATAAAA
1 TATTAAATAATAATTAATAAT-ATATTAATAAAA
21013585 TATTAATATAATAA
1 TATTAA-ATAATAA
21013599 AAAAAATATT
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
34 13 0.34
35 19 0.50
36 6 0.16
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (33 bp):
TATTAAATAATAATTAATAATATATTAATAAAA
Found at i:21013591 original size:20 final size:21
Alignment explanation
Indices: 21013568--21013615 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
21013558 TATTATTTTA
* *
21013568 TAATAAT-ATTAATAAAATAT
1 TAATAATAATAAAAAAAATAT
21013588 TAAT-ATAATAAAAAAAATAT
1 TAATAATAATAAAAAAAATAT
21013608 TACATAAT
1 TA-ATAAT
21013616 TATATCATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 2 0.09
20 17 0.74
21 2 0.09
22 2 0.09
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (21 bp):
TAATAATAATAAAAAAAATAT
Found at i:21014710 original size:14 final size:15
Alignment explanation
Indices: 21014685--21014716 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
21014675 GATGTTTTTG
21014685 TAAATAGTTTTTCAA
1 TAAATAGTTTTTCAA
21014700 TAAATAGTTTTT-AA
1 TAAATAGTTTTTCAA
21014714 TAA
1 TAA
21014717 TAATAATTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.47
Consensus pattern (15 bp):
TAAATAGTTTTTCAA
Found at i:21016126 original size:14 final size:13
Alignment explanation
Indices: 21016103--21016135 Score: 52
Period size: 11 Copynumber: 2.7 Consensus size: 13
21016093 TGTTCATATG
21016103 TTTATTATTATTA
1 TTTATTATTATTA
21016116 TTTA-T-TTATTA
1 TTTATTATTATTA
21016127 TTTATTATT
1 TTTATTATT
21016136 TTTTAGAGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
11 10 0.56
12 2 0.11
13 6 0.33
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (13 bp):
TTTATTATTATTA
Found at i:21018066 original size:18 final size:18
Alignment explanation
Indices: 21018045--21018082 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
21018035 CCCTAAGGAC
*
21018045 ATTAAATGCCCTGTAATG
1 ATTAAATGCCATGTAATG
21018063 ATTAAATGCCATGTAATG
1 ATTAAATGCCATGTAATG
21018081 AT
1 AT
21018083 GAACTAGAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.34
Consensus pattern (18 bp):
ATTAAATGCCATGTAATG
Found at i:21018168 original size:16 final size:16
Alignment explanation
Indices: 21018149--21018200 Score: 72
Period size: 16 Copynumber: 3.2 Consensus size: 16
21018139 TTTAATCTAA
21018149 ATTTATTTTTTATTTT
1 ATTTATTTTTTATTTT
21018165 ATTTATTTATTTA-TTT
1 ATTTATTT-TTTATTTT
21018181 ATTTATTATTTT-TTTT
1 ATTTATT-TTTTATTTT
21018197 ATTT
1 ATTT
21018201 TTATTATATT
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
16 28 0.85
17 5 0.15
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (16 bp):
ATTTATTTTTTATTTT
Found at i:21018201 original size:8 final size:8
Alignment explanation
Indices: 21018150--21018205 Score: 51
Period size: 9 Copynumber: 6.8 Consensus size: 8
21018140 TTAATCTAAA
21018150 TTTA-TTT
1 TTTATTTT
21018157 TTTATTTT
1 TTTATTTT
*
21018165 ATTTATTTA
1 -TTTATTTT
*
21018174 TTTATTTA
1 TTTATTTT
21018182 TTTATTATT
1 TTTATT-TT
*
21018191 TTTTTTATT
1 TTTATT-TT
21018200 TTTATT
1 TTTATT
21018206 ATATTACATT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
7 4 0.10
8 17 0.40
9 21 0.50
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (8 bp):
TTTATTTT
Found at i:21018204 original size:38 final size:40
Alignment explanation
Indices: 21018154--21018234 Score: 107
Period size: 42 Copynumber: 2.1 Consensus size: 40
21018144 TCTAAATTTA
*
21018154 TTTTTTATTTTATT-TATT-TA-T-TTATTTATTTATTATT
1 TTTTTTATTTTATTATATTACATTATTATTTATTT-TTATT
21018191 TTTTTTATTTTTATTATATTACATTATTATTTATTTTTATT
1 TTTTTTA-TTTTATTATATTACATTATTATTTATTTTTATT
21018232 TTT
1 TTT
21018235 GGTGAATAAG
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
37 7 0.18
38 7 0.18
39 4 0.11
40 1 0.03
41 9 0.24
42 10 0.26
ACGTcount: A:0.22, C:0.01, G:0.00, T:0.77
Consensus pattern (40 bp):
TTTTTTATTTTATTATATTACATTATTATTTATTTTTATT
Found at i:21018226 original size:4 final size:4
Alignment explanation
Indices: 21018149--21018191 Score: 63
Period size: 4 Copynumber: 11.0 Consensus size: 4
21018139 TTTAATCTAA
21018149 ATTT ATTT -TTT ATTTT ATTT ATTT ATTT ATTT ATTT A-TT ATTT
1 ATTT ATTT ATTT A-TTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT
21018192 TTTTTATTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
3 6 0.17
4 26 0.72
5 4 0.11
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
ATTT
Found at i:21031980 original size:24 final size:24
Alignment explanation
Indices: 21031952--21032011 Score: 102
Period size: 24 Copynumber: 2.5 Consensus size: 24
21031942 TTTTTAGTAA
21031952 GTCCTTTATTTCTTTGACTTTACC
1 GTCCTTTATTTCTTTGACTTTACC
21031976 GTCCTTTATTTCTTTGACTTTACC
1 GTCCTTTATTTCTTTGACTTTACC
* *
21032000 GTTCTTAATTTC
1 GTCCTTTATTTC
21032012 ATAAACATGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.13, C:0.23, G:0.08, T:0.55
Consensus pattern (24 bp):
GTCCTTTATTTCTTTGACTTTACC
Found at i:21033132 original size:51 final size:51
Alignment explanation
Indices: 21033072--21033230 Score: 239
Period size: 51 Copynumber: 3.1 Consensus size: 51
21033062 ACTCTAGAGC
* * *
21033072 CAATTTTCCAATATGTTAATGGAGACAATCTAGATTTCTAGGTACCTGATG
1 CAATTTTCCAATACGTTAATGGAGACAAGCTAGAATTCTAGGTACCTGATG
* * *
21033123 CAATTTTCCAACACGTTAACGGAGACGAGCTAGAATTCTAGGTA-CTGATG
1 CAATTTTCCAATACGTTAATGGAGACAAGCTAGAATTCTAGGTACCTGATG
* *
21033173 CAATTTTCCAATACGTTAATAGAGACAAGCTAGAATTCTAGGTACTTGATG
1 CAATTTTCCAATACGTTAATGGAGACAAGCTAGAATTCTAGGTACCTGATG
21033224 CAATTTT
1 CAATTTT
21033231 TTGTAGATTT
Statistics
Matches: 96, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
50 46 0.48
51 50 0.52
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Consensus pattern (51 bp):
CAATTTTCCAATACGTTAATGGAGACAAGCTAGAATTCTAGGTACCTGATG
Found at i:21033476 original size:24 final size:24
Alignment explanation
Indices: 21033431--21033518 Score: 79
Period size: 24 Copynumber: 3.5 Consensus size: 24
21033421 TATTCAAACG
*
21033431 CATATGAAAAATAAAATTATTACACAT
1 CATATTAAAAA-AAAA--ATTACACAT
* * *
21033458 CATACTAAAAAAAAAATTATATAT
1 CATATTAAAAAAAAAATTACACAT
**
21033482 CATATTAAAAAAATTATTACACA-
1 CATATTAAAAAAAAAATTACACAT
21033505 CAATATTAAAAAAA
1 C-ATATTAAAAAAA
21033519 TGTTATGTTA
Statistics
Matches: 51, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
23 1 0.02
24 37 0.73
26 4 0.08
27 9 0.18
ACGTcount: A:0.60, C:0.10, G:0.01, T:0.28
Consensus pattern (24 bp):
CATATTAAAAAAAAAATTACACAT
Found at i:21033519 original size:24 final size:24
Alignment explanation
Indices: 21033443--21033519 Score: 93
Period size: 24 Copynumber: 3.2 Consensus size: 24
21033433 TATGAAAAAT
*
21033443 AAAATTATTACACATCATACTAAA
1 AAAATTATTACACATCATATTAAA
** * *
21033467 AAAAAAATTATATATCATATTAAA
1 AAAATTATTACACATCATATTAAA
21033491 AAAATTATTACACA-CAATATTAAA
1 AAAATTATTACACATC-ATATTAAA
21033515 AAAAT
1 AAAAT
21033520 GTTATGTTAT
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
23 1 0.02
24 42 0.98
ACGTcount: A:0.60, C:0.10, G:0.00, T:0.30
Consensus pattern (24 bp):
AAAATTATTACACATCATATTAAA
Found at i:21033594 original size:21 final size:19
Alignment explanation
Indices: 21033562--21033610 Score: 53
Period size: 23 Copynumber: 2.3 Consensus size: 19
21033552 CCAAAATTAT
21033562 TAAAATAAAAAAGAATTGAAAA
1 TAAAA-AAAAAAGAA--GAAAA
21033584 TAAAAAAAAAAAAGAAGAAAA
1 T--AAAAAAAAAAGAAGAAAA
21033605 TAAAAA
1 TAAAAA
21033611 GCCAGCTGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
19 5 0.20
21 6 0.24
22 1 0.04
23 9 0.36
24 4 0.16
ACGTcount: A:0.80, C:0.00, G:0.08, T:0.12
Consensus pattern (19 bp):
TAAAAAAAAAAGAAGAAAA
Found at i:21036559 original size:20 final size:20
Alignment explanation
Indices: 21036534--21036599 Score: 60
Period size: 20 Copynumber: 3.1 Consensus size: 20
21036524 TTAAATGATC
*
21036534 TTTAAATTTGTTTGAATAAT
1 TTTAAATTTCTTTGAATAAT
* *
21036554 TTTAAAGTTCTTTGAATGAGTT
1 TTTAAATTTCTTTGAAT-A-AT
* *
21036576 TTTAAATTTTTTTAAATAAGT
1 TTTAAATTTCTTTGAATAA-T
21036597 TTT
1 TTT
21036600 GAAGTGCCTA
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
20 15 0.42
21 6 0.17
22 15 0.42
ACGTcount: A:0.32, C:0.02, G:0.11, T:0.56
Consensus pattern (20 bp):
TTTAAATTTCTTTGAATAAT
Found at i:21036581 original size:22 final size:22
Alignment explanation
Indices: 21036553--21036599 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
21036543 GTTTGAATAA
* *
21036553 TTTTAAAGTTCTTTGAATGAGT
1 TTTTAAAGTTCTTTAAATAAGT
* *
21036575 TTTTAAATTTTTTTAAATAAGT
1 TTTTAAAGTTCTTTAAATAAGT
21036597 TTT
1 TTT
21036600 GAAGTGCCTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.57
Consensus pattern (22 bp):
TTTTAAAGTTCTTTAAATAAGT
Found at i:21036659 original size:22 final size:22
Alignment explanation
Indices: 21036633--21036678 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
21036623 GAAAAGTTTC
*
21036633 AAAATCACTTGAGTGAGTTTTG
1 AAAATCACTTGAATGAGTTTTG
* * *
21036655 AAAATTACTTTAATGATTTTTG
1 AAAATCACTTGAATGAGTTTTG
21036677 AA
1 AA
21036679 CTTATATGAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.37, C:0.07, G:0.15, T:0.41
Consensus pattern (22 bp):
AAAATCACTTGAATGAGTTTTG
Found at i:21037372 original size:32 final size:34
Alignment explanation
Indices: 21037332--21037410 Score: 99
Period size: 36 Copynumber: 2.3 Consensus size: 34
21037322 CTTTGGCCTT
*
21037332 TAAAAGGCATTG-TGA-AGGTTGTGCTTGATCCA
1 TAAAAGGCATTGATGAGAGGTTGTGCATGATCCA
*
21037364 TAAAAGGCATTGCATTGAGAGGTTGTGCATGATCCT
1 TAAAAGGCATTG-A-TGAGAGGTTGTGCATGATCCA
*
21037400 TGAAAGGCATT
1 TAAAAGGCATT
21037411 ATAAAAGTTA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
32 12 0.30
35 3 0.08
36 25 0.62
ACGTcount: A:0.29, C:0.13, G:0.28, T:0.30
Consensus pattern (34 bp):
TAAAAGGCATTGATGAGAGGTTGTGCATGATCCA
Found at i:21038720 original size:19 final size:19
Alignment explanation
Indices: 21038693--21038730 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
21038683 CCATTTAACT
*
21038693 TATTAGAGTATGATTTGAG
1 TATTAGAGTATAATTTGAG
*
21038712 TATTGGAGTATAATTTGAG
1 TATTAGAGTATAATTTGAG
21038731 GGTTTGGCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.26, T:0.42
Consensus pattern (19 bp):
TATTAGAGTATAATTTGAG
Found at i:21040121 original size:13 final size:13
Alignment explanation
Indices: 21040103--21040127 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
21040093 AGAGAAATTG
21040103 TGATTTTATAAAA
1 TGATTTTATAAAA
21040116 TGATTTTATAAA
1 TGATTTTATAAA
21040128 TTTTCTGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:21041371 original size:15 final size:15
Alignment explanation
Indices: 21041327--21041372 Score: 65
Period size: 15 Copynumber: 3.1 Consensus size: 15
21041317 AAATCAGAGA
* *
21041327 TTTTGATTTGAAAGC
1 TTTTGATTTTAAAGT
*
21041342 TTTGGATTTTAAAGT
1 TTTTGATTTTAAAGT
21041357 TTTTGATTTTAAAGT
1 TTTTGATTTTAAAGT
21041372 T
1 T
21041373 GTTTTAAGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.26, C:0.02, G:0.17, T:0.54
Consensus pattern (15 bp):
TTTTGATTTTAAAGT
Found at i:21041432 original size:14 final size:15
Alignment explanation
Indices: 21041407--21041439 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
21041397 TGCGTGGCCC
21041407 AAGTTAAGTTAAGTT
1 AAGTTAAGTTAAGTT
21041422 AAGTT-AGTTAAGTT
1 AAGTTAAGTTAAGTT
21041436 AAGT
1 AAGT
21041440 CAGGTTAGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.39, C:0.00, G:0.21, T:0.39
Consensus pattern (15 bp):
AAGTTAAGTTAAGTT
Found at i:21041446 original size:19 final size:19
Alignment explanation
Indices: 21041408--21041447 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
21041398 GCGTGGCCCA
*
21041408 AGTTAAGTTAAGTTAAGTT
1 AGTTAAGTTAAGTCAAGTT
*
21041427 AGTTAAGTTAAGTCAGGTT
1 AGTTAAGTTAAGTCAAGTT
21041446 AG
1 AG
21041448 GTAAAATAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.35, C:0.03, G:0.25, T:0.38
Consensus pattern (19 bp):
AGTTAAGTTAAGTCAAGTT
Found at i:21041449 original size:5 final size:5
Alignment explanation
Indices: 21041407--21041439 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
21041397 TGCGTGGCCC
21041407 AAGTT AAGTT AAGTT AAGTT -AGTT AAGTT AAGT
1 AAGTT AAGTT AAGTT AAGTT AAGTT AAGTT AAGT
21041440 CAGGTTAGGT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.39, C:0.00, G:0.21, T:0.39
Consensus pattern (5 bp):
AAGTT
Found at i:21046919 original size:13 final size:13
Alignment explanation
Indices: 21046901--21046925 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
21046891 AGAGAAATTG
21046901 TGATTTTATAAAA
1 TGATTTTATAAAA
21046914 TGATTTTATAAA
1 TGATTTTATAAA
21046926 TTTTCTAGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:21049215 original size:173 final size:170
Alignment explanation
Indices: 21048871--21049215 Score: 435
Period size: 172 Copynumber: 2.0 Consensus size: 170
21048861 GATGGATGGA
*
21048871 AGCAACCAAAAAGCAAAAATCATTTTCTTCCCTATAGTTCTTTTCACCTTCTTCTTCTTTACTTT
1 AGCAACCAAAAAGCAAAAACCATTTTCTT--CTATAGTTCTTTTCACCTTCTTCTTCTTTACTTT
* * * * *
21048936 TTTCCACATTCTCTTTATTTCAATTTTGCACCGAATTTGATAAAATTGAAATCTTTTGTTTATTT
64 TTTCCACATTCTCTTTATTTCAATTTTACACCGAATTTAAAAAAATTAAAACCTTTTGTTTATTT
* ** * *
21049001 TAAGATGGATGGGAAATCTTGAATCATTCCTTTCTTTTCCTC
129 CAAGATAAATGGGAAATCTTGAACCATTCCTTTCCTTTCCTC
* * *
21049043 AGCAACCAAAATGCAAAAACCATTTTTCTT-TATGCAGTTTTTTTCACCTTCTTCTTCGTTT-TT
1 AGCAACCAAAAAGCAAAAACCA-TTTTCTTCTAT--AGTTCTTTTCACCTTCTTCTTC-TTTACT
* * * *
21049106 TTTTTTCACTTTTTCTTTATTTCAATTTTACATCGAATTTTAAAAAAATTAAAACCTTTTGTTTA
62 TTTTTCCACATTCTCTTTATTTCAATTTTACACCGAA-TTTAAAAAAATTAAAACCTTTTGTTTA
21049171 TTTCAAGATAAAT-GGAATATCTTGAACCATTCCTTTCCTTTCCTC
126 TTTCAAGATAAATGGGAA-ATCTTGAACCATTCCTTTCCTTTCCTC
21049216 TTTAAATTTT
Statistics
Matches: 149, Mismatches: 18, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
170 3 0.02
172 78 0.52
173 68 0.46
ACGTcount: A:0.27, C:0.20, G:0.08, T:0.46
Consensus pattern (170 bp):
AGCAACCAAAAAGCAAAAACCATTTTCTTCTATAGTTCTTTTCACCTTCTTCTTCTTTACTTTTT
TCCACATTCTCTTTATTTCAATTTTACACCGAATTTAAAAAAATTAAAACCTTTTGTTTATTTCA
AGATAAATGGGAAATCTTGAACCATTCCTTTCCTTTCCTC
Found at i:21058371 original size:63 final size:63
Alignment explanation
Indices: 21058304--21058425 Score: 163
Period size: 63 Copynumber: 1.9 Consensus size: 63
21058294 AGCTCGCTCT
*
21058304 CTCTCAGCTCTCTAAACTATATCAACTCTGTCAACTCTCTATTAAGCACCATTGTCATCAACG
1 CTCTCAGCTCTCTAAACTATATCAACTCTGTCAACTCTATATTAAGCACCATTGTCATCAACG
* * * * * * * *
21058367 CTCTCAGCTCTTTGAACTGTATGAGCTCTGTCAACTTTATGTTGAGCACCATTGTCATC
1 CTCTCAGCTCTCTAAACTATATCAACTCTGTCAACTCTATATTAAGCACCATTGTCATC
21058426 GTGCTGTGGT
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
63 50 1.00
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (63 bp):
CTCTCAGCTCTCTAAACTATATCAACTCTGTCAACTCTATATTAAGCACCATTGTCATCAACG
Found at i:21058743 original size:44 final size:46
Alignment explanation
Indices: 21058655--21058784 Score: 149
Period size: 44 Copynumber: 2.8 Consensus size: 46
21058645 TGTGTTAGAA
* *
21058655 CATGGCATGTAACATTTTTATTTAACATGGCGTGTAACAATTTTTGAA-
1 CATGGCATGTAACA-CTTT-TTGAACATGGCGTGTAACAATTTTT-AAG
* * *
21058703 C-TTGCATGTAACA-TTTTTGAGCATGGCGTGTAACATTTTTTAAG
1 CATGGCATGTAACACTTTTTGAACATGGCGTGTAACAATTTTTAAG
* *
21058747 CATGGCATGTAACACTTTTTGAAAATGGTGTGTAACAA
1 CATGGCATGTAACACTTTTTGAACATGGCGTGTAACAA
21058785 CATAAGTGAC
Statistics
Matches: 70, Mismatches: 9, Indels: 8
0.80 0.10 0.09
Matches are distributed among these distances:
43 2 0.03
44 23 0.33
45 14 0.20
46 19 0.27
47 11 0.16
48 1 0.01
ACGTcount: A:0.30, C:0.13, G:0.19, T:0.38
Consensus pattern (46 bp):
CATGGCATGTAACACTTTTTGAACATGGCGTGTAACAATTTTTAAG
Found at i:21058748 original size:23 final size:22
Alignment explanation
Indices: 21058653--21058766 Score: 113
Period size: 22 Copynumber: 5.0 Consensus size: 22
21058643 CATGTGTTAG
21058653 AACATGGCATGTAACATTTTTATTT
1 AACATGGCATGTAACA--TTT-TTT
* *
21058678 AACATGGCGTGTAACAATTTTTG
1 AACATGGCATGTAAC-ATTTTTT
* *
21058701 AAC-TTGCATGTAACATTTTTG
1 AACATGGCATGTAACATTTTTT
* *
21058722 AGCATGGCGTGTAACATTTTTT
1 AACATGGCATGTAACATTTTTT
*
21058744 AAGCATGGCATGTAACACTTTTT
1 AA-CATGGCATGTAACATTTTTT
21058767 GAAAATGGTG
Statistics
Matches: 75, Mismatches: 11, Indels: 8
0.80 0.12 0.09
Matches are distributed among these distances:
21 9 0.12
22 25 0.33
23 23 0.31
24 3 0.04
25 14 0.19
26 1 0.01
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (22 bp):
AACATGGCATGTAACATTTTTT
Found at i:21058774 original size:23 final size:22
Alignment explanation
Indices: 21058652--21058783 Score: 122
Period size: 23 Copynumber: 5.8 Consensus size: 22
21058642 ACATGTGTTA
21058652 GAACATGGCATGTAACATTTTTATT
1 GAACATGGCATGTAACA--TTT-TT
* *
21058677 TAACATGGCGTGTAACAATTTTT
1 GAACATGGCATGTAAC-ATTTTT
*
21058700 GAAC-TTGCATGTAACATTTTT
1 GAACATGGCATGTAACATTTTT
* *
21058721 GAGCATGGCGTGTAACATTTTT
1 GAACATGGCATGTAACATTTTT
*
21058743 TAAGCATGGCATGTAACACTTTTT
1 GAA-CATGGCATGTAACA-TTTTT
* **
21058767 GAAAATGGTGTGTAACA
1 GAACATGGCATGTAACA
21058784 ACATAAGTGA
Statistics
Matches: 88, Mismatches: 15, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
21 9 0.10
22 25 0.28
23 29 0.33
24 10 0.11
25 14 0.16
26 1 0.01
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.37
Consensus pattern (22 bp):
GAACATGGCATGTAACATTTTT
Found at i:21064615 original size:71 final size:71
Alignment explanation
Indices: 21064520--21064655 Score: 209
Period size: 71 Copynumber: 1.9 Consensus size: 71
21064510 TGTTGGACTC
* * * *
21064520 TATTATAGATGATAAAGGTTTTAAAATATGATATAGGATTGGTTAAAGGTTTATATTTTAAAGAT
1 TATTATAGATGATAAAGGCTTTAAAATATAATATAGGATTGATTAAAGGCTTATATTTTAAAGAT
21064585 AAGCTA
66 AAGCTA
* * *
21064591 TATTATAGATGGTCAAGGCTTTAAAATATAATATAGGATTGATTAAATGCTTATATTTTAAAGAT
1 TATTATAGATGATAAAGGCTTTAAAATATAATATAGGATTGATTAAAGGCTTATATTTTAAAGAT
21064656 GGGAATGGTT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
71 58 1.00
ACGTcount: A:0.40, C:0.03, G:0.17, T:0.40
Consensus pattern (71 bp):
TATTATAGATGATAAAGGCTTTAAAATATAATATAGGATTGATTAAAGGCTTATATTTTAAAGAT
AAGCTA
Found at i:21065102 original size:21 final size:21
Alignment explanation
Indices: 21065074--21065130 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
21065064 GAAGTTGTTG
21065074 GAGGCCCATTTAAAGCTGCTA
1 GAGGCCCATTTAAAGCTGCTA
* * *
21065095 -ACGGCCCATCTGAAGGTGCTA
1 GA-GGCCCATTTAAAGCTGCTA
*
21065116 GAGGCCAATTTAAAG
1 GAGGCCCATTTAAAG
21065131 ATGTTGGTGG
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
20 1 0.04
21 26 0.93
22 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.26, T:0.21
Consensus pattern (21 bp):
GAGGCCCATTTAAAGCTGCTA
Found at i:21065148 original size:42 final size:42
Alignment explanation
Indices: 21065036--21065193 Score: 122
Period size: 42 Copynumber: 3.8 Consensus size: 42
21065026 GCACTAGACT
* * * *
21065036 CCAATTTAAAGCTATTGGTGG-CTCATCTGAAGTTGTTGGAGG
1 CCAATTTAAAGCTGTTGGTGGCCT-ATCTGAAGGTGCTAGAGG
* * *** *
21065078 CCCATTTAAAGCTGCTAACGGCCCATCTGAAGGTGCTAGAGG
1 CCAATTTAAAGCTGTTGGTGGCCTATCTGAAGGTGCTAGAGG
* ** * *
21065120 CCAATTTAAAGATGTTGGTGGCCTATCTGAACTTGCTATAGA
1 CCAATTTAAAGCTGTTGGTGGCCTATCTGAAGGTGCTAGAGG
* * *
21065162 CTAATTTAAAGCTGCTGATGG-CTCATCTGAAG
1 CCAATTTAAAGCTGTTGGTGGCCT-ATCTGAAG
21065194 CTACTGAAGG
Statistics
Matches: 88, Mismatches: 26, Indels: 4
0.75 0.22 0.03
Matches are distributed among these distances:
41 2 0.02
42 85 0.97
43 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.30
Consensus pattern (42 bp):
CCAATTTAAAGCTGTTGGTGGCCTATCTGAAGGTGCTAGAGG
Found at i:21065194 original size:21 final size:21
Alignment explanation
Indices: 21065170--21065219 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
21065160 GACTAATTTA
*
21065170 AAGCTGCTGATGG-CTCATCTG
1 AAGCTGCTGAAGGCCT-ATCTG
*
21065191 AAGCTACTGAAGGCCTATCTG
1 AAGCTGCTGAAGGCCTATCTG
21065212 AAGCTGCT
1 AAGCTGCT
21065220 AGAAATGATG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 23 0.92
22 2 0.08
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (21 bp):
AAGCTGCTGAAGGCCTATCTG
Found at i:21067568 original size:24 final size:24
Alignment explanation
Indices: 21067541--21067601 Score: 104
Period size: 24 Copynumber: 2.5 Consensus size: 24
21067531 TGAGTTAAGG
21067541 TGCTACTGGTGCACCAAGTGAAGC
1 TGCTACTGGTGCACCAAGTGAAGC
21067565 TGCTACTGGTGCACCAAGTGAAGC
1 TGCTACTGGTGCACCAAGTGAAGC
* *
21067589 TGTTGCTGGTGCA
1 TGCTACTGGTGCA
21067602 AGTGCACTTC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.21, C:0.23, G:0.31, T:0.25
Consensus pattern (24 bp):
TGCTACTGGTGCACCAAGTGAAGC
Found at i:21068670 original size:91 final size:91
Alignment explanation
Indices: 21068482--21068702 Score: 212
Period size: 91 Copynumber: 2.4 Consensus size: 91
21068472 AATTTATGGC
** * ** * * *
21068482 GTGACACACTGAGTGGTAGCAAATTTATGGGGTGACATGCCGAGT-TGTAGCAAATTGATGGCAT
1 GTGACACACTGAGTGAAAGCAGATTTATGGCATGACAT--TGAGTAT-TAGTAGATTGATGGCAT
* **
21068546 GACAAGCTGAGTGGTAACAGATTCATAGG
63 GACAAGCTGAGTGCTAACAGATTCATACA
*
21068575 GTGACACATTGAGTGAAAGCAGATTTATGGCATGACATTGAGTATTAGTAGATTGATGGCATGAC
1 GTGACACACTGAGTGAAAGCAGATTTATGGCATGACATTGAGTATTAGTAGATTGATGGCATGAC
* * *
21068640 ACA-TTGAGTGCTAGCAGATTTATACA
66 A-AGCTGAGTGCTAACAGATTCATACA
* ** * *
21068666 GTGACACGCTGAGTGGTAGTAGATTTATGGCGTGACA
1 GTGACACACTGAGTGAAAGCAGATTTATGGCATGACA
21068703 CACTGAGTGG
Statistics
Matches: 105, Mismatches: 21, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
91 71 0.68
92 2 0.02
93 32 0.30
ACGTcount: A:0.30, C:0.13, G:0.29, T:0.27
Consensus pattern (91 bp):
GTGACACACTGAGTGAAAGCAGATTTATGGCATGACATTGAGTATTAGTAGATTGATGGCATGAC
AAGCTGAGTGCTAACAGATTCATACA
Found at i:21068727 original size:31 final size:31
Alignment explanation
Indices: 21068288--21068739 Score: 297
Period size: 31 Copynumber: 14.4 Consensus size: 31
21068278 TCCTTTTTTT
* * *
21068288 CGTGACACACTAAGTGGTAGTAGATTCATGG
1 CGTGACACACTGAGTGGTAGCAGATTTATGG
* *** *
21068319 GGTGACATGTTGAGTGGAAGCAGATTTATGG
1 CGTGACACACTGAGTGGTAGCAGATTTATGG
* * *
21068350 CGTGACACACTGAATGGTAGTAGATTCATGAG
1 CGTGACACACTGAGTGGTAGCAGATTTATG-G
* * *
21068382 -GTGACACACTGACTGAAAGCAGGTAACAGATTTATAAG
1 CGTG--ACAC--ACTG--AG-TGGTAGCAGATTTAT-GG
* *
21068420 -GTGACACATTGAGTGGTAGCAGATTTATAG
1 CGTGACACACTGAGTGGTAGCAGATTTATGG
* ** * *
21068450 CATGACATGCTGAATGGTAGCAAATTTATGG
1 CGTGACACACTGAGTGGTAGCAGATTTATGG
*
21068481 CGTGACACACTGAGTGGTAGCAAATTTATGG
1 CGTGACACACTGAGTGGTAGCAGATTTATGG
* ** * * * *
21068512 GGTGACATGCCGAGTTGTAGCAAATTGATGG
1 CGTGACACACTGAGTGGTAGCAGATTTATGG
* * *
21068543 CATGACA-AGCTGAGTGGTAACAGATTCATAGG
1 CGTGACACA-CTGAGTGGTAGCAGATTTAT-GG
* **
21068575 -GTGACACATTGAGTGAAAGCAGATTTATGG
1 CGTGACACACTGAGTGGTAGCAGATTTATGG
* * ** * *
21068605 CATG--ACATTGAGTATTAGTAGATTGATGG
1 CGTGACACACTGAGTGGTAGCAGATTTATGG
* * * *
21068634 CATGACACATTGAGTGCTAGCAGATTTAT-A
1 CGTGACACACTGAGTGGTAGCAGATTTATGG
* *
21068664 CAGTGACACGCTGAGTGGTAGTAGATTTATGG
1 C-GTGACACACTGAGTGGTAGCAGATTTATGG
*
21068696 CGTGACACACTGAGTGGAAGCAGATTTATGG
1 CGTGACACACTGAGTGGTAGCAGATTTATGG
* *
21068727 CATGACACGCTGA
1 CGTGACACACTGA
21068740 CTTGTTGCAG
Statistics
Matches: 325, Mismatches: 78, Indels: 36
0.74 0.18 0.08
Matches are distributed among these distances:
29 24 0.07
30 5 0.02
31 258 0.79
32 7 0.02
33 4 0.01
34 3 0.01
35 4 0.01
36 4 0.01
37 1 0.00
38 15 0.05
ACGTcount: A:0.31, C:0.14, G:0.29, T:0.26
Consensus pattern (31 bp):
CGTGACACACTGAGTGGTAGCAGATTTATGG
Found at i:21070259 original size:81 final size:81
Alignment explanation
Indices: 21070088--21070263 Score: 192
Period size: 81 Copynumber: 2.2 Consensus size: 81
21070078 AGAAGTGCTC
* * * * * * *
21070088 TGAAAAAGATGGTTCCCTTCAGCTTGAATTGAAGGAATGTTCATATCCCCTCTGGCTACTGCCTC
1 TGAAAAAGATGGTCCCCTTCAACCTGAATTGAAGCAAGGTTCACATCCCCTCTGACTACTGCCTC
*
21070153 GACTACTACATCGACT
66 GACTAATACATCGACT
** * * *
21070169 TGAGGAAGATGGTCCCCTTCAACCTGAATTGATGCAAGGTTCCCATCCCCTTCT-ACTGCTGCCT
1 TGAAAAAGATGGTCCCCTTCAACCTGAATTGAAGCAAGGTTCACATCCCC-TCTGACTACTGCCT
* **
21070233 CGACTAATGCATCGGTT
65 CGACTAATACATCGACT
21070250 TGAAAAAGATGGTC
1 TGAAAAAGATGGTC
21070264 TTTTTCAGCC
Statistics
Matches: 76, Mismatches: 18, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
81 73 0.96
82 3 0.04
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.28
Consensus pattern (81 bp):
TGAAAAAGATGGTCCCCTTCAACCTGAATTGAAGCAAGGTTCACATCCCCTCTGACTACTGCCTC
GACTAATACATCGACT
Found at i:21072647 original size:31 final size:32
Alignment explanation
Indices: 21072604--21072711 Score: 141
Period size: 31 Copynumber: 3.5 Consensus size: 32
21072594 AGAAAGAAAT
* *
21072604 AAATATTGTTACACG-CTATGCATATCAAGTA
1 AAATGTTGTTACACGACTATGCATATCAAGTC
* * *
21072635 AAATGTTATTACA-GACCATGTATATCAAGTC
1 AAATGTTGTTACACGACTATGCATATCAAGTC
*
21072666 AGATGTTGTTACACGAC-ATGCATATCAAGTC
1 AAATGTTGTTACACGACTATGCATATCAAGTC
21072697 AAATGTTGTTACACG
1 AAATGTTGTTACACG
21072712 CTAACGCTGA
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
30 1 0.02
31 62 0.94
32 3 0.05
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (32 bp):
AAATGTTGTTACACGACTATGCATATCAAGTC
Found at i:21073366 original size:23 final size:23
Alignment explanation
Indices: 21073334--21073423 Score: 110
Period size: 23 Copynumber: 3.9 Consensus size: 23
21073324 TTTTTTCTAT
*
21073334 TTCAAACCATGGCGTGTCACATG
1 TTCAACCCATGGCGTGTCACATG
*
21073357 TTCAACCCATGACGTGTCACATG
1 TTCAACCCATGGCGTGTCACATG
* **
21073380 TTCAAGCCATACCGTGTCACATG
1 TTCAACCCATGGCGTGTCACATG
*
21073403 TTC-TCACCATGGCGTGTCACA
1 TTCAAC-CCATGGCGTGTCACA
21073424 CACTCTAAAC
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
23 57 1.00
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (23 bp):
TTCAACCCATGGCGTGTCACATG
Found at i:21073454 original size:47 final size:47
Alignment explanation
Indices: 21073346--21073546 Score: 131
Period size: 46 Copynumber: 4.3 Consensus size: 47
21073336 CAAACCATGG
* * *** * *
21073346 CGTGTCACATGTTC-AACCCATGACGTGTCACATGTTC-AAGCCATAC
1 CGTGTCACATATTCTCA-CCATGACGTGTCACACACTCTAAACCCTAC
* *
21073392 CGTGTCACATGTTCTCACCATGGCGTGTCACACACTCTAAACCCTAC
1 CGTGTCACATATTCTCACCATGACGTGTCACACACTCTAAACCCTAC
** * * * * **
21073439 CGTGTCACATATTCTCACCGCGCCATCTCACACA-T-TATCACCCTGT
1 CGTGTCACATATTCTCACCATGACGTGTCACACACTCTA-AACCCTAC
* * * * * * *
21073485 TGTGTCACAAATTCCCTCCATAACGTGTCACAAACTCTAAACCCTGC
1 CGTGTCACATATTCTCACCATGACGTGTCACACACTCTAAACCCTAC
*
21073532 CGTGTCACAGATTCT
1 CGTGTCACATATTCT
21073547 GAACCTTGCT
Statistics
Matches: 118, Mismatches: 32, Indels: 9
0.74 0.20 0.06
Matches are distributed among these distances:
45 2 0.02
46 59 0.50
47 55 0.47
48 2 0.02
ACGTcount: A:0.25, C:0.34, G:0.14, T:0.27
Consensus pattern (47 bp):
CGTGTCACATATTCTCACCATGACGTGTCACACACTCTAAACCCTAC
Found at i:21073565 original size:24 final size:24
Alignment explanation
Indices: 21073508--21073570 Score: 74
Period size: 24 Copynumber: 2.7 Consensus size: 24
21073498 CCCTCCATAA
* * *
21073508 CGTGTCACAAACTCTAAACCCTGC
1 CGTGTCACAGATTCTGAACCCTGC
*
21073532 CGTGTCACAGATTCTGAACCTTGC
1 CGTGTCACAGATTCTGAACCCTGC
*
21073556 TGTGTCACAG-TTCTG
1 CGTGTCACAGATTCTG
21073571 TGTCACATAT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
23 5 0.15
24 29 0.85
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.29
Consensus pattern (24 bp):
CGTGTCACAGATTCTGAACCCTGC
Found at i:21073622 original size:23 final size:23
Alignment explanation
Indices: 21073571--21073783 Score: 141
Period size: 23 Copynumber: 9.3 Consensus size: 23
21073561 CACAGTTCTG
*
21073571 TGTCACATATGCTCACCAT-GC-
1 TGTCACATATTCTCACCATGGCA
21073592 TGTCTCACATATTCTCACCATGGCA
1 TG--TCACATATTCTCACCATGGCA
* *
21073617 TGTCACATATACACACCATGGCA
1 TGTCACATATTCTCACCATGGCA
*
21073640 TG-C-CACATTCTCA-CACTGGCA
1 TGTCACATATTCTCACCA-TGGCA
* * *
21073661 TGTTACATATCCTCACCATGGCG
1 TGTCACATATTCTCACCATGGCA
* * * *
21073684 TGTCACAAATTCTAAACCCTGCCA
1 TGTCACATATTCT-CACCATGGCA
* ** * *
21073708 TGTCACTTACGCTCACCATGCCG
1 TGTCACATATTCTCACCATGGCA
* * ** *
21073731 TCTCACATATTCTCACCCTCTCG
1 TGTCACATATTCTCACCATGGCA
*
21073754 TGTCACATATTC-CCCTCATGGCA
1 TGTCACATATTCTCAC-CATGGCA
21073777 TGTCACA
1 TGTCACA
21073784 AACTCTAAAC
Statistics
Matches: 145, Mismatches: 37, Indels: 18
0.73 0.19 0.09
Matches are distributed among these distances:
20 2 0.01
21 16 0.11
22 3 0.02
23 103 0.71
24 19 0.13
25 2 0.01
ACGTcount: A:0.24, C:0.35, G:0.13, T:0.28
Consensus pattern (23 bp):
TGTCACATATTCTCACCATGGCA
Found at i:21073881 original size:23 final size:23
Alignment explanation
Indices: 21073808--21073879 Score: 90
Period size: 23 Copynumber: 3.1 Consensus size: 23
21073798 CCATGTCATA
*
21073808 GCCATGTCACACATTCTCACCAT
1 GCCATGTCACACATTCCCACCAT
* **
21073831 ACCATGTCACATGTTCCCACCAT
1 GCCATGTCACACATTCCCACCAT
* *
21073854 GCCGTGTCACACATTCCCATCAT
1 GCCATGTCACACATTCCCACCAT
21073877 GCC
1 GCC
21073880 GTTTCACAAA
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.24, C:0.40, G:0.11, T:0.25
Consensus pattern (23 bp):
GCCATGTCACACATTCCCACCAT
Found at i:21073886 original size:23 final size:23
Alignment explanation
Indices: 21073812--21073887 Score: 89
Period size: 23 Copynumber: 3.3 Consensus size: 23
21073802 GTCATAGCCA
* * *
21073812 TGTCACACATTCTCACCATACCA
1 TGTCACACATTCCCACCATGCCG
**
21073835 TGTCACATGTTCCCACCATGCCG
1 TGTCACACATTCCCACCATGCCG
*
21073858 TGTCACACATTCCCATCATGCCG
1 TGTCACACATTCCCACCATGCCG
*
21073881 TTTCACA
1 TGTCACA
21073888 AACTCTAAAC
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.24, C:0.38, G:0.11, T:0.28
Consensus pattern (23 bp):
TGTCACACATTCCCACCATGCCG
Found at i:21078769 original size:33 final size:32
Alignment explanation
Indices: 21078688--21078769 Score: 94
Period size: 32 Copynumber: 2.5 Consensus size: 32
21078678 AATATAACAT
* * *
21078688 TGATATGACATGTTAATGTATCATAATTGATA
1 TGATATAACATGTTAATATATCATAATTAATA
*
21078720 TGATATAACATGTTAATATATCATACTTAATGA
1 TGATATAACATGTTAATATATCATAATTAAT-A
*
21078753 TGA-AGTAACATATTAAT
1 TGATA-TAACATGTTAAT
21078770 TTGACATTAT
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
32 28 0.65
33 15 0.35
ACGTcount: A:0.41, C:0.07, G:0.12, T:0.39
Consensus pattern (32 bp):
TGATATAACATGTTAATATATCATAATTAATA
Found at i:21082932 original size:28 final size:28
Alignment explanation
Indices: 21082900--21082953 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
21082890 TGTTACAAAC
* *
21082900 AAATAAATTACACTCA-ATATAAATAAGT
1 AAATAAACTACA-TCAGACATAAATAAGT
21082928 AAATAAACTACATCAGACATAAATAA
1 AAATAAACTACATCAGACATAAATAA
21082954 AGTATTAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 3 0.13
28 20 0.87
ACGTcount: A:0.59, C:0.13, G:0.04, T:0.24
Consensus pattern (28 bp):
AAATAAACTACATCAGACATAAATAAGT
Found at i:21084151 original size:20 final size:20
Alignment explanation
Indices: 21084126--21084167 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
21084116 TAAAAGAATA
*
21084126 AAAATACATTTAAG-TTTTTT
1 AAAATA-ATTCAAGATTTTTT
21084146 AAAATAATTCAAGATTTTTT
1 AAAATAATTCAAGATTTTTT
21084166 AA
1 AA
21084168 GTATTAAAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
Consensus pattern (20 bp):
AAAATAATTCAAGATTTTTT
Found at i:21093771 original size:22 final size:23
Alignment explanation
Indices: 21093740--21093785 Score: 76
Period size: 22 Copynumber: 2.0 Consensus size: 23
21093730 TCCTCCTCCT
*
21093740 CCTCTTCCTCCACCCAACGACAC
1 CCTCTTCCTCCACCCAACAACAC
21093763 CCTC-TCCTCCACCCAACAACAC
1 CCTCTTCCTCCACCCAACAACAC
21093785 C
1 C
21093786 ACCTTCCGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.24, C:0.59, G:0.02, T:0.15
Consensus pattern (23 bp):
CCTCTTCCTCCACCCAACAACAC
Found at i:21097096 original size:27 final size:28
Alignment explanation
Indices: 21097057--21097115 Score: 93
Period size: 27 Copynumber: 2.1 Consensus size: 28
21097047 GTTGGGAGTG
*
21097057 CAGAAGGCAGAGGTAGTGGATATTAGGT
1 CAGAAGGCAGAGGTAGTGGATATTAGAT
*
21097085 CAGAA-GCAGAGGTGGTGGATATTAGAT
1 CAGAAGGCAGAGGTAGTGGATATTAGAT
21097112 CAGA
1 CAGA
21097116 TGATGTTGGA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 24 0.83
28 5 0.17
ACGTcount: A:0.34, C:0.08, G:0.37, T:0.20
Consensus pattern (28 bp):
CAGAAGGCAGAGGTAGTGGATATTAGAT
Found at i:21101772 original size:23 final size:23
Alignment explanation
Indices: 21101746--21101793 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
21101736 TGGGAAGAGA
* *
21101746 GGAAAAGACAATGAAGGTTGAAG
1 GGAAAAGAAAATGAAAGTTGAAG
*
21101769 GGAAGAGAAAATGAAAGTTGAAG
1 GGAAAAGAAAATGAAAGTTGAAG
21101792 GG
1 GG
21101794 CTTCCCAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.48, C:0.02, G:0.38, T:0.12
Consensus pattern (23 bp):
GGAAAAGAAAATGAAAGTTGAAG
Found at i:21101930 original size:34 final size:34
Alignment explanation
Indices: 21101887--21101954 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
21101877 TTTGTTGGAT
* * *
21101887 AAAAGTTGTTGGAAGTTATTGAAATATTAAATGC
1 AAAAGTTGTTAGAAATTATTAAAATATTAAATGC
* *
21101921 AAAAGTTGTTATAAATTTTTAAAATATTAAATGC
1 AAAAGTTGTTAGAAATTATTAAAATATTAAATGC
21101955 GAAGTTATTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.44, C:0.03, G:0.15, T:0.38
Consensus pattern (34 bp):
AAAAGTTGTTAGAAATTATTAAAATATTAAATGC
Found at i:21102594 original size:27 final size:27
Alignment explanation
Indices: 21102564--21102620 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 27
21102554 CTCCTTGCTT
*
21102564 CACCATGAGCAGGGACAAATCTAGCAC
1 CACCATAAGCAGGGACAAATCTAGCAC
* *
21102591 CACCATAAGTAGGGACAAATTTAGCAC
1 CACCATAAGCAGGGACAAATCTAGCAC
21102618 CAC
1 CAC
21102621 AACCAAGTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.39, C:0.28, G:0.19, T:0.14
Consensus pattern (27 bp):
CACCATAAGCAGGGACAAATCTAGCAC
Found at i:21106199 original size:19 final size:19
Alignment explanation
Indices: 21106175--21106228 Score: 81
Period size: 19 Copynumber: 2.8 Consensus size: 19
21106165 GAGAGACCTA
*
21106175 AAGGAGAGAAAGGGAGAAT
1 AAGGAGAGAAAGGGAGAAC
21106194 AAGGAGAGAAAGGGAGAAC
1 AAGGAGAGAAAGGGAGAAC
*
21106213 AGGGGAGAGAAAGGGA
1 A-AGGAGAGAAAGGGA
21106229 CTAGAGTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 19 0.59
20 13 0.41
ACGTcount: A:0.50, C:0.02, G:0.46, T:0.02
Consensus pattern (19 bp):
AAGGAGAGAAAGGGAGAAC
Found at i:21111718 original size:27 final size:27
Alignment explanation
Indices: 21111679--21111745 Score: 116
Period size: 27 Copynumber: 2.4 Consensus size: 27
21111669 TAAAAATTAG
21111679 ATTTAAAAATATCATAATGACAGAATAT
1 ATTT-AAAATATCATAATGACAGAATAT
*
21111707 ATTTAAAATATCATAATGGCAGAATAT
1 ATTTAAAATATCATAATGACAGAATAT
21111734 ATTTAAAATATC
1 ATTTAAAATATC
21111746 TTAACTACCA
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
27 34 0.89
28 4 0.11
ACGTcount: A:0.51, C:0.07, G:0.07, T:0.34
Consensus pattern (27 bp):
ATTTAAAATATCATAATGACAGAATAT
Found at i:21113539 original size:19 final size:20
Alignment explanation
Indices: 21113515--21113553 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
21113505 TGTACAAAAA
*
21113515 ATAAGCATATCATCA-ACAT
1 ATAAGCATATAATCACACAT
*
21113534 ATAAGCTTATAATCACACAT
1 ATAAGCATATAATCACACAT
21113554 TCATTATCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.46, C:0.21, G:0.05, T:0.28
Consensus pattern (20 bp):
ATAAGCATATAATCACACAT
Found at i:21117482 original size:767 final size:767
Alignment explanation
Indices: 21116008--21117541 Score: 3032
Period size: 767 Copynumber: 2.0 Consensus size: 767
21115998 TCATCCATCA
21116008 GCTTGTGATATTCATTAATTTGACTCTTGATATCCTTGTCATTTATCATCTCTTAGCATTAGAAG
1 GCTTGTGATATTCATTAATTTGACTCTTGATATCCTTGTCATTTATCATCTCTTAGCATTAGAAG
* *
21116073 TTTCCAATCATGAACTTTTGTTTCCCAACATCTTCATCAGTGTATTTGGAAACCATCGAATCCCA
66 TTTCCAATCATGAACTTTTGTTTCCCAACATCTTCAGCAGTATATTTGGAAACCATCGAATCCCA
21116138 TATTTACTTTACTTCTTTGTAAAAACTATAAACATCAAATAGCTCATTAGAAAGTATGTTAATAA
131 TATTTACTTTACTTCTTTGTAAAAACTATAAACATCAAATAGCTCATTAGAAAGTATGTTAATAA
21116203 TTGTATGCTTGTATACCTTATTTGCGTGCGTCCATTGTCCTAGCATGTTGACATCGTCTGGCTTG
196 TTGTATGCTTGTATACCTTATTTGCGTGCGTCCATTGTCCTAGCATGTTGACATCGTCTGGCTTG
21116268 TAATTGGTTAATGCAAAAGCCATTGCATGAATGTTAAGGACGAAAAATATCCTTCCTTGCCACAT
261 TAATTGGTTAATGCAAAAGCCATTGCATGAATGTTAAGGACGAAAAATATCCTTCCTTGCCACAT
21116333 TTTGAAATTATTGCCATCAAACACCTTGATTTTGGATATGTTAAGAAATGATTTTGCATATGACA
326 TTTGAAATTATTGCCATCAAACACCTTGATTTTGGATATGTTAAGAAATGATTTTGCATATGACA
21116398 CCGAGGGCATGGCATGGCAGGAACGAACAAGGCAATGGGAATGGTGGATGCGTTGGTAACATTTA
391 CCGAGGGCATGGCATGGCAGGAACGAACAAGGCAATGGGAATGGTGGATGCGTTGGTAACATTTA
21116463 CAATGGTGGCAATATTTATTGAGGTAGAACCATTAGCAGCAGTGGTGGACGTAATGATAATGGCA
456 CAATGGTGGCAATATTTATTGAGGTAGAACCATTAGCAGCAGTGGTGGACGTAATGATAATGGCA
*
21116528 ACAATATTATTAGTTTGAGAATCCATATTATCCTTAAGATTGTTATTGAAAATTGAAACTGATAA
521 ACAATATTATCAGTTTGAGAATCCATATTATCCTTAAGATTGTTATTGAAAATTGAAACTGATAA
*
21116593 ACTACTGAAACAATTCTAAGGCGTAATATACTGTCCTTAAGGATAAATTTTGCCTCTTCTGAGTA
586 ACTACTGAAACAATTCTAAGGCGTAATATACTGTCCTTAAGGATAAATTTTGCCCCTTCTGAGTA
21116658 TGAAACTTGGTACAAAAGAATTTAAGTGGTTATCTCCTATGATTCAACAAACTCTTCTTAAATAG
651 TGAAACTTGGTACAAAAGAATTTAAGTGGTTATCTCCTATGATTCAACAAACTCTTCTTAAATAG
21116723 TTTGCATAAACTATCAAAGATATAAGAGTAGTAGAAAAATAAAGGAAAAAAG
716 TTTGCATAAACTATCAAAGATATAAGAGTAGTAGAAAAATAAAGGAAAAAAG
21116775 GCTTGTGATATTCATTAATTTGACTCTTGATATCCTTGTCATTTATCATCTCTTAGCATTAGAAG
1 GCTTGTGATATTCATTAATTTGACTCTTGATATCCTTGTCATTTATCATCTCTTAGCATTAGAAG
21116840 TTTCCAATCATGAACTTTTGTTTCCCAACATCTTCAGCAGTATATTTGGAAACCATCGAATCCCA
66 TTTCCAATCATGAACTTTTGTTTCCCAACATCTTCAGCAGTATATTTGGAAACCATCGAATCCCA
21116905 TATTTACTTTACTTCTTTGTAAAAACTATAAACATCAAATAGCTCATTAGAAAGTATGTTAATAA
131 TATTTACTTTACTTCTTTGTAAAAACTATAAACATCAAATAGCTCATTAGAAAGTATGTTAATAA
21116970 TTGTATGCTTGTATACCTTATTTGCGTGCGTCCATTGTCCTAGCATGTTGACATCGTCTGGCTTG
196 TTGTATGCTTGTATACCTTATTTGCGTGCGTCCATTGTCCTAGCATGTTGACATCGTCTGGCTTG
21117035 TAATTGGTTAATGCAAAAGCCATTGCATGAATGTTAAGGACGAAAAATATCCTTCCTTGCCACAT
261 TAATTGGTTAATGCAAAAGCCATTGCATGAATGTTAAGGACGAAAAATATCCTTCCTTGCCACAT
21117100 TTTGAAATTATTGCCATCAAACACCTTGATTTTGGATATGTTAAGAAATGATTTTGCATATGACA
326 TTTGAAATTATTGCCATCAAACACCTTGATTTTGGATATGTTAAGAAATGATTTTGCATATGACA
21117165 CCGAGGGCATGGCATGGCAGGAACGAACAAGGCAATGGGAATGGTGGATGCGTTGGTAACATTTA
391 CCGAGGGCATGGCATGGCAGGAACGAACAAGGCAATGGGAATGGTGGATGCGTTGGTAACATTTA
21117230 CAATGGTGGCAATATTTATTGAGGTAGAACCATTAGCAGCAGTGGTGGACGTAATGATAATGGCA
456 CAATGGTGGCAATATTTATTGAGGTAGAACCATTAGCAGCAGTGGTGGACGTAATGATAATGGCA
21117295 ACAATATTATCAGTTTGAGAATCCATATTATCCTTAAGATTGTTATTGAAAATTGAAACTGATAA
521 ACAATATTATCAGTTTGAGAATCCATATTATCCTTAAGATTGTTATTGAAAATTGAAACTGATAA
21117360 ACTACTGAAACAATTCTAAGGCGTAATATACTGTCCTTAAGGATAAATTTTGCCCCTTCTGAGTA
586 ACTACTGAAACAATTCTAAGGCGTAATATACTGTCCTTAAGGATAAATTTTGCCCCTTCTGAGTA
21117425 TGAAACTTGGTACAAAAGAATTTAAGTGGTTATCTCCTATGATTCAACAAACTCTTCTTAAATAG
651 TGAAACTTGGTACAAAAGAATTTAAGTGGTTATCTCCTATGATTCAACAAACTCTTCTTAAATAG
21117490 TTTGCATAAACTATCAAAGATATAAGAGTAGTAGAAAAATAAAGGAAAAAAG
716 TTTGCATAAACTATCAAAGATATAAGAGTAGTAGAAAAATAAAGGAAAAAAG
21117542 AACCTAGCAA
Statistics
Matches: 763, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
767 763 1.00
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (767 bp):
GCTTGTGATATTCATTAATTTGACTCTTGATATCCTTGTCATTTATCATCTCTTAGCATTAGAAG
TTTCCAATCATGAACTTTTGTTTCCCAACATCTTCAGCAGTATATTTGGAAACCATCGAATCCCA
TATTTACTTTACTTCTTTGTAAAAACTATAAACATCAAATAGCTCATTAGAAAGTATGTTAATAA
TTGTATGCTTGTATACCTTATTTGCGTGCGTCCATTGTCCTAGCATGTTGACATCGTCTGGCTTG
TAATTGGTTAATGCAAAAGCCATTGCATGAATGTTAAGGACGAAAAATATCCTTCCTTGCCACAT
TTTGAAATTATTGCCATCAAACACCTTGATTTTGGATATGTTAAGAAATGATTTTGCATATGACA
CCGAGGGCATGGCATGGCAGGAACGAACAAGGCAATGGGAATGGTGGATGCGTTGGTAACATTTA
CAATGGTGGCAATATTTATTGAGGTAGAACCATTAGCAGCAGTGGTGGACGTAATGATAATGGCA
ACAATATTATCAGTTTGAGAATCCATATTATCCTTAAGATTGTTATTGAAAATTGAAACTGATAA
ACTACTGAAACAATTCTAAGGCGTAATATACTGTCCTTAAGGATAAATTTTGCCCCTTCTGAGTA
TGAAACTTGGTACAAAAGAATTTAAGTGGTTATCTCCTATGATTCAACAAACTCTTCTTAAATAG
TTTGCATAAACTATCAAAGATATAAGAGTAGTAGAAAAATAAAGGAAAAAAG
Found at i:21118944 original size:20 final size:19
Alignment explanation
Indices: 21118907--21118961 Score: 53
Period size: 20 Copynumber: 2.9 Consensus size: 19
21118897 AGCAAATAGA
21118907 ATAAAAATAAAAAAGATAC
1 ATAAAAATAAAAAAGATAC
* *
21118926 ATAAATAATAATAATGAT--
1 ATAAA-AATAAAAAAGATAC
21118944 ATAAATAA-AAAAAAGATA
1 ATAAA-AATAAAAAAGATA
21118962 AAAGAAAACT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
17 7 0.23
18 8 0.27
19 5 0.17
20 10 0.33
ACGTcount: A:0.71, C:0.02, G:0.05, T:0.22
Consensus pattern (19 bp):
ATAAAAATAAAAAAGATAC
Found at i:21119847 original size:23 final size:23
Alignment explanation
Indices: 21119810--21119853 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
21119800 AAGATTTTAT
21119810 TTAATTGATAAATTAAAAAATTA
1 TTAATTGATAAATTAAAAAATTA
* * *
21119833 TTAATTTATATATTAATAAAT
1 TTAATTGATAAATTAAAAAAT
21119854 AAAAAATTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (23 bp):
TTAATTGATAAATTAAAAAATTA
Found at i:21119859 original size:31 final size:31
Alignment explanation
Indices: 21119817--21119877 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
21119807 TATTTAATTG
*
21119817 ATAAATTAAAAAATT-ATTAATTTATATATTA
1 ATAAA-TAAAAAATTAATTAATTGATATATTA
*
21119848 ATAAATAAAAAATTAATTTATTGATATATT
1 ATAAATAAAAAATTAATTAATTGATATATT
21119878 CTTTATTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 9 0.33
31 18 0.67
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (31 bp):
ATAAATAAAAAATTAATTAATTGATATATTA
Found at i:21123006 original size:25 final size:25
Alignment explanation
Indices: 21122978--21123026 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
21122968 AGGGAAAGGA
* *
21122978 AAAGAAAAAAGAAGGAAAAGTAAAG
1 AAAGAAAAAAGAAGAAAAAATAAAG
* *
21123003 AAAGGAAACAGAAGAAAAAATAAA
1 AAAGAAAAAAGAAGAAAAAATAAA
21123027 TAGGAATACA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.73, C:0.02, G:0.20, T:0.04
Consensus pattern (25 bp):
AAAGAAAAAAGAAGAAAAAATAAAG
Found at i:21124317 original size:15 final size:14
Alignment explanation
Indices: 21124297--21124333 Score: 56
Period size: 15 Copynumber: 2.6 Consensus size: 14
21124287 GCTGTTCTGC
21124297 TTCTTCTTATATATT
1 TTCTTCTTATAT-TT
21124312 TTCTTCTTATATTT
1 TTCTTCTTATATTT
*
21124326 TTCCTCTT
1 TTCTTCTT
21124334 TTTCTGTGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 9 0.43
15 12 0.57
ACGTcount: A:0.14, C:0.19, G:0.00, T:0.68
Consensus pattern (14 bp):
TTCTTCTTATATTT
Found at i:21124333 original size:14 final size:15
Alignment explanation
Indices: 21124301--21124333 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
21124291 TTCTGCTTCT
*
21124301 TCTTATATATTTTCT
1 TCTTATATATTTTCC
21124316 TCTTATAT-TTTTCC
1 TCTTATATATTTTCC
21124330 TCTT
1 TCTT
21124334 TTTCTGTGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.15, C:0.18, G:0.00, T:0.67
Consensus pattern (15 bp):
TCTTATATATTTTCC
Found at i:21140349 original size:19 final size:19
Alignment explanation
Indices: 21140325--21140366 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
21140315 TTAGAGTAAA
*
21140325 GTTTCTATGATTGAGGATG
1 GTTTCTATGATGGAGGATG
* *
21140344 GTTTCTATTATGGAGGGTG
1 GTTTCTATGATGGAGGATG
21140363 GTTT
1 GTTT
21140367 GTTGGTGAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.17, C:0.05, G:0.33, T:0.45
Consensus pattern (19 bp):
GTTTCTATGATGGAGGATG
Found at i:21147085 original size:4 final size:4
Alignment explanation
Indices: 21147070--21147101 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
21147060 ATCCACAATA
*
21147070 CTAT CCAT CTAT CTAT CTAT CTAT CTAT CTAT
1 CTAT CTAT CTAT CTAT CTAT CTAT CTAT CTAT
21147102 TATATTTCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.25, C:0.28, G:0.00, T:0.47
Consensus pattern (4 bp):
CTAT
Found at i:21152953 original size:16 final size:16
Alignment explanation
Indices: 21152933--21152962 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
21152923 TTTTTAAAAA
21152933 AAAAAATT-ATTTTTC
1 AAAAAATTAATTTTTC
21152948 AAAAAATTAATTTTT
1 AAAAAATTAATTTTT
21152963 TTAAAAGCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (16 bp):
AAAAAATTAATTTTTC
Found at i:21152959 original size:19 final size:17
Alignment explanation
Indices: 21152921--21152968 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 17
21152911 CCTGAAGCTC
21152921 TTTTTTTAAAAAAAAAAA
1 TTTTTTT-AAAAAAAAAA
**
21152939 TTATTTTTCAAAAAATTAA
1 TT-TTTTT-AAAAAAAAAA
21152958 TTTTTTTAAAA
1 TTTTTTTAAAA
21152969 GCTTTTCAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
17 4 0.15
18 7 0.27
19 15 0.58
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (17 bp):
TTTTTTTAAAAAAAAAA
Found at i:21153628 original size:3 final size:3
Alignment explanation
Indices: 21153620--21153654 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
21153610 TAAGTATAAA
* *
21153620 ATT ATT ATT ATT GTT ATT GTT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
21153655 AACGAGTGGT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:21155569 original size:338 final size:341
Alignment explanation
Indices: 21154949--21155579 Score: 941
Period size: 338 Copynumber: 1.9 Consensus size: 341
21154939 NNNNNNNNNN
* *
21154949 AATTAATTTTTTTTACACCTTATGTCAAAAATAAATTGTTTTTGACATTTGAAGGGTTTTTTTTT
1 AATTAATTTTTTTTACACCTTATGTCAAAAATAAATTGCTTTTGACATTTGAAGGGTTTTTTTTC
*
21155014 TGTTTTTTTACTTTTATTTATTTTAATAAAAAATACTTAACAACAATAATTTCTAACTTTTAATG
66 TGTTTTTCTA-TTTTATTTATTTTAATAAAAAATACTTAACAACAATAATTTCTAACTTTTAATG
* * * *
21155079 CTTGGAAGATAGATTCATTTAATATTTATCAATTACAATTTAATATTATTTTTTATCTATATTCT
130 CGTAGAAAATAGATTCATTTAATATTTATCAATTACAATTTAATATTATTTTTCATCTATATTCT
* * * * * *
21155144 CTTATTTTGCGTGAACCTGAATTTATAGTATATAGATATCTCTTTTATACTTAAATGTTTAAATT
195 CTTATTCTGCATCAACCTGAATCTATAGTATATAGACATCTCTTTTATACATAAATGTTTAAATT
*
21155209 TCAATAAATATCCATCCAATTCATT-ATATAAAAGTAGAATAATTGATTGGATCAATTAATTGAC
260 TCAATAAACATCCATCCAATTCATTGA-ATAAAAGTAGAATAATTGATTGGATCAATTAATTGAC
21155273 ATTTGTCATTCTTAATTA
324 ATTTGTCATTCTTAATTA
* *
21155291 AATTAATTTTTTTTACACCTTATGTCAAAATTACATTGCTTTTGACATTTGAA-GGTTTTTTTTC
1 AATTAATTTTTTTTACACCTTATGTCAAAAATAAATTGCTTTTGACATTTGAAGGGTTTTTTTTC
* ** *
21155355 T-TTTTTCT-TTTTATTTATTTTAGTAAAAAATGTTTGAA-AACAATAATTTCTAATTTTTAATG
66 TGTTTTTCTATTTTATTTATTTTAATAAAAAATACTT-AACAACAATAATTTCTAACTTTTAATG
* * *
21155417 CGTATAAAATAGATTCATTTAATATTTATCAATTATAATTTAATATTATTTTTCGTCTATATTCT
130 CGTAGAAAATAGATTCATTTAATATTTATCAATTACAATTTAATATTATTTTTCATCTATATTCT
* * * *
21155482 CTTATTCTGCATCAACCTGAATCTATAGTATATAGACATCTTTTTTGTGCATGAATGTTTAAA-T
195 CTTATTCTGCATCAACCTGAATCTATAGTATATAGACATCTCTTTTATACATAAATGTTTAAATT
21155546 TCTAATAAACATCCATCCAATTCATTGAATAAAA
260 TC-AATAAACATCCATCCAATTCATTGAATAAAA
21155580 TAAAAAAGTC
Statistics
Matches: 259, Mismatches: 27, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
337 3 0.01
338 186 0.72
339 3 0.01
340 6 0.02
341 11 0.04
342 50 0.19
ACGTcount: A:0.34, C:0.11, G:0.08, T:0.48
Consensus pattern (341 bp):
AATTAATTTTTTTTACACCTTATGTCAAAAATAAATTGCTTTTGACATTTGAAGGGTTTTTTTTC
TGTTTTTCTATTTTATTTATTTTAATAAAAAATACTTAACAACAATAATTTCTAACTTTTAATGC
GTAGAAAATAGATTCATTTAATATTTATCAATTACAATTTAATATTATTTTTCATCTATATTCTC
TTATTCTGCATCAACCTGAATCTATAGTATATAGACATCTCTTTTATACATAAATGTTTAAATTT
CAATAAACATCCATCCAATTCATTGAATAAAAGTAGAATAATTGATTGGATCAATTAATTGACAT
TTGTCATTCTTAATTA
Found at i:21157064 original size:92 final size:91
Alignment explanation
Indices: 21156893--21157078 Score: 354
Period size: 92 Copynumber: 2.0 Consensus size: 91
21156883 AAAATTATTC
21156893 TAATCTCACAACTTCTCTTTAGGTTTATAAATTATAAGTTTATATAAAAAAATAAATATAACATA
1 TAATCTCACAACTTCTCTTTAGGTTTATAAATTATAAGTTTATATAAAAAAATAAATATAACATA
21156958 ATTAATAAAAGTAATTATATTGCCAT
66 ATTAATAAAAGTAATTATATTGCCAT
*
21156984 TAANTCTCATAACTTCTCTTTAGGTTTATAAATTATAAGTTTATATAAAAAAATAAATATAACAT
1 TAA-TCTCACAACTTCTCTTTAGGTTTATAAATTATAAGTTTATATAAAAAAATAAATATAACAT
21157049 AATTAATAAAAGTAATTATATTGCCAT
65 AATTAATAAAAGTAATTATATTGCCAT
21157076 TAA
1 TAA
21157079 AAGACAATTA
Statistics
Matches: 93, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
91 3 0.03
92 90 0.97
ACGTcount: A:0.46, C:0.09, G:0.05, T:0.39
Consensus pattern (91 bp):
TAATCTCACAACTTCTCTTTAGGTTTATAAATTATAAGTTTATATAAAAAAATAAATATAACATA
ATTAATAAAAGTAATTATATTGCCAT
Found at i:21157365 original size:27 final size:27
Alignment explanation
Indices: 21157335--21157403 Score: 63
Period size: 27 Copynumber: 2.6 Consensus size: 27
21157325 ATAAAAGTAT
* *
21157335 ATATATATAATAATT-ATATTTTTTGTA
1 ATATATATAATAATTCATATTATTT-AA
*
21157362 ATATGATATGAT-ATTCATATTATTTAA
1 ATAT-ATATAATAATTCATATTATTTAA
21157389 ATATA-ATTAATAATT
1 ATATATA-TAATAATT
21157404 TTTTAATTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
25 1 0.03
26 4 0.12
27 15 0.44
28 14 0.41
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.51
Consensus pattern (27 bp):
ATATATATAATAATTCATATTATTTAA
Found at i:21157666 original size:25 final size:26
Alignment explanation
Indices: 21157638--21157692 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
21157628 CTATTTTGTT
*
21157638 TTTTACTTTCC-TTTCATTTTTTCTC
1 TTTTACTTACCTTTTCATTTTTTCTC
*
21157663 TTTTTCTTACCTTTTCATTTTTTCTC
1 TTTTACTTACCTTTTCATTTTTTCTC
21157689 TTTT
1 TTTT
21157693 TTTTTTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
25 9 0.33
26 18 0.67
ACGTcount: A:0.07, C:0.22, G:0.00, T:0.71
Consensus pattern (26 bp):
TTTTACTTACCTTTTCATTTTTTCTC
Found at i:21157693 original size:1 final size:1
Alignment explanation
Indices: 21157689--21157716 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
21157679 ATTTTTTCTC
21157689 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
21157717 ACTCCCATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:21166722 original size:5 final size:5
Alignment explanation
Indices: 21166712--21166738 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
21166702 TTAAATCATA
21166712 TATAT TATAT TATAT TATAT TATAT TA
1 TATAT TATAT TATAT TATAT TATAT TA
21166739 CAAGGTACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TATAT
Found at i:21168722 original size:11 final size:11
Alignment explanation
Indices: 21168698--21168754 Score: 53
Period size: 11 Copynumber: 5.2 Consensus size: 11
21168688 ATATGTTATC
*
21168698 ATTAAAATAGT
1 ATTAAAATATT
*
21168709 ATTAATATATT
1 ATTAAAATATT
*
21168720 ATTAAAATACTA
1 ATTAAAATA-TT
**
21168732 ATT-ATTTATT
1 ATTAAAATATT
21168742 ATTAAAATATT
1 ATTAAAATATT
21168753 AT
1 AT
21168755 ATTTTAATAT
Statistics
Matches: 35, Mismatches: 9, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
10 4 0.11
11 27 0.77
12 4 0.11
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (11 bp):
ATTAAAATATT
Found at i:21168726 original size:22 final size:22
Alignment explanation
Indices: 21168698--21168750 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
21168688 ATATGTTATC
*
21168698 ATTAAAATAGT-ATTAATATATT
1 ATTAAAATACTAATT-ATATATT
*
21168720 ATTAAAATACTAATTATTTATT
1 ATTAAAATACTAATTATATATT
21168742 ATTAAAATA
1 ATTAAAATA
21168751 TTATATTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
22 25 0.89
23 3 0.11
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (22 bp):
ATTAAAATACTAATTATATATT
Found at i:21168733 original size:19 final size:21
Alignment explanation
Indices: 21168693--21168770 Score: 70
Period size: 22 Copynumber: 3.6 Consensus size: 21
21168683 ATTTAATATG
* *
21168693 TTATCATTAAAATAGT-ATTAA
1 TTATTATTAAAATACTAATT-A
21168714 TATATTATTAAAATACTAATTA
1 T-TATTATTAAAATACTAATTA
*
21168736 TTTATTATTAAAATATTATATT-
1 -TTATTATTAAAATACTA-ATTA
*
21168758 TTAATATTAAAAT
1 TTATTATTAAAAT
21168771 GTTAGTATGA
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
21 13 0.27
22 29 0.59
23 7 0.14
ACGTcount: A:0.47, C:0.03, G:0.01, T:0.49
Consensus pattern (21 bp):
TTATTATTAAAATACTAATTA
Found at i:21168765 original size:21 final size:22
Alignment explanation
Indices: 21168719--21168770 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 22
21168709 ATTAATATAT
*
21168719 TATTAAAATACTAATTATTTAT
1 TATTAAAATACTAATTATTTAA
*
21168741 TATTAAAATA-TTA-TATTTTAA
1 TATTAAAATACTAATTA-TTTAA
21168762 TATTAAAAT
1 TATTAAAAT
21168771 GTTAGTATGA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 2 0.07
21 15 0.56
22 10 0.37
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (22 bp):
TATTAAAATACTAATTATTTAA
Found at i:21175304 original size:56 final size:56
Alignment explanation
Indices: 21175229--21175345 Score: 137
Period size: 56 Copynumber: 2.1 Consensus size: 56
21175219 CAATTCTCAT
* * * *
21175229 CACAAATTACTAAAACACACCCCTCCATGAATATCCTTTTATTATTATCATTAAAC
1 CACAAATTACTAAAACACACCCCTCCATAAATACCCCTTTATTATTACCATTAAAC
* ** * *
21175285 CACAAATTA-TCAAAGCACACCTGTCCATAAATACCCCTTTATTTTTCCCATTAAAC
1 CACAAATTACT-AAAACACACCCCTCCATAAATACCCCTTTATTATTACCATTAAAC
21175341 CACAA
1 CACAA
21175346 CACCTATTGA
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
55 1 0.02
56 50 0.98
ACGTcount: A:0.38, C:0.29, G:0.03, T:0.30
Consensus pattern (56 bp):
CACAAATTACTAAAACACACCCCTCCATAAATACCCCTTTATTATTACCATTAAAC
Found at i:21182241 original size:15 final size:17
Alignment explanation
Indices: 21182216--21182255 Score: 57
Period size: 16 Copynumber: 2.4 Consensus size: 17
21182206 AATTTTTATA
21182216 ATTTTACTTAAT-AAATT
1 ATTTTA-TTAATAAAATT
21182233 -TTTTATTAATAAAATT
1 ATTTTATTAATAAAATT
21182249 ATTTTAT
1 ATTTTAT
21182256 AATTTAATTC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
15 5 0.24
16 10 0.48
17 6 0.29
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (17 bp):
ATTTTATTAATAAAATT
Found at i:21185879 original size:16 final size:16
Alignment explanation
Indices: 21185848--21185878 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
21185838 AGGATTGAAA
21185848 CTTTTTTTTTCTTTTT
1 CTTTTTTTTTCTTTTT
21185864 CTTTTTTTTT-TTTTT
1 CTTTTTTTTTCTTTTT
21185879 TGGGGGGGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (16 bp):
CTTTTTTTTTCTTTTT
Found at i:21188209 original size:23 final size:25
Alignment explanation
Indices: 21188181--21188231 Score: 70
Period size: 23 Copynumber: 2.1 Consensus size: 25
21188171 TTTTATATTT
*
21188181 TAAATATTATTA-AAATTAAAA-AA
1 TAAATAATATTATAAATTAAAACAA
*
21188204 TAAATAATATTATATATTAAAACAA
1 TAAATAATATTATAAATTAAAACAA
21188229 TAA
1 TAA
21188232 TCTAACCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 11 0.46
24 8 0.33
25 5 0.21
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (25 bp):
TAAATAATATTATAAATTAAAACAA
Found at i:21192929 original size:39 final size:37
Alignment explanation
Indices: 21192886--21192961 Score: 98
Period size: 39 Copynumber: 2.0 Consensus size: 37
21192876 CATTAATTGT
* *
21192886 TTTAAATTAATTAAATTAACTAATATTTTTATAAAATAA
1 TTTAAATTAACTAAATTAACTAAT-TTATTA-AAAATAA
* *
21192925 TTTAAATTAACTAATTTAATTAATTTATTAAAAATAA
1 TTTAAATTAACTAAATTAACTAATTTATTAAAAATAA
21192962 ATGTTTAATA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
37 7 0.21
38 5 0.15
39 21 0.64
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (37 bp):
TTTAAATTAACTAAATTAACTAATTTATTAAAAATAA
Found at i:21193090 original size:19 final size:19
Alignment explanation
Indices: 21193063--21193101 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
21193053 ATTAAAAATT
*
21193063 TTCATTAAAAAATATTTTTA
1 TTCATT-AAAAATAATTTTA
21193083 TTCA-TAAAAATAATTTTA
1 TTCATTAAAAATAATTTTA
21193101 T
1 T
21193102 AAATTTGTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 13 0.72
19 1 0.06
20 4 0.22
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (19 bp):
TTCATTAAAAATAATTTTA
Found at i:21197217 original size:26 final size:26
Alignment explanation
Indices: 21197181--21197289 Score: 103
Period size: 23 Copynumber: 4.6 Consensus size: 26
21197171 GACTTTGAGT
*
21197181 ATTGCGTGACTAGTTTTTGATAAAGC
1 ATTGCGTGACTAGTTTTTGATAAGGC
21197207 ATTGCGTGACTAG---TTGAT-AGGC
1 ATTGCGTGACTAGTTTTTGATAAGGC
* *
21197229 ATTGCGTGACT--TGTTAG-TAAGGC
1 ATTGCGTGACTAGTTTTTGATAAGGC
*
21197252 ATTGCGTGACTAG--TTAG-TAAGGC
1 ATTGCGTGACTAGTTTTTGATAAGGC
*
21197275 ATTGCGTGATTAGTT
1 ATTGCGTGACTAGTT
21197290 AGTAAGGCAT
Statistics
Matches: 72, Mismatches: 3, Indels: 17
0.78 0.03 0.18
Matches are distributed among these distances:
22 15 0.21
23 44 0.61
26 13 0.18
ACGTcount: A:0.24, C:0.12, G:0.28, T:0.36
Consensus pattern (26 bp):
ATTGCGTGACTAGTTTTTGATAAGGC
Found at i:21197251 original size:23 final size:23
Alignment explanation
Indices: 21197205--21197309 Score: 144
Period size: 23 Copynumber: 4.6 Consensus size: 23
21197195 TTTTGATAAA
*
21197205 GCATTGCGTGACTAGTT-G-ATAG
1 GCATTGCGTGACTTGTTAGTA-AG
21197227 GCATTGCGTGACTTGTTAGTAAG
1 GCATTGCGTGACTTGTTAGTAAG
*
21197250 GCATTGCGTGACTAGTTAGTAAG
1 GCATTGCGTGACTTGTTAGTAAG
21197273 GCATTGCGTGA-TTAGTTAGTAAG
1 GCATTGCGTGACTT-GTTAGTAAG
*
21197296 GCATTACGTGACTT
1 GCATTGCGTGACTT
21197310 AGGCATTATT
Statistics
Matches: 75, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
22 17 0.23
23 55 0.73
24 3 0.04
ACGTcount: A:0.24, C:0.13, G:0.30, T:0.33
Consensus pattern (23 bp):
GCATTGCGTGACTTGTTAGTAAG
Found at i:21197262 original size:45 final size:46
Alignment explanation
Indices: 21197205--21197308 Score: 160
Period size: 46 Copynumber: 2.3 Consensus size: 46
21197195 TTTTGATAAA
21197205 GCATTGCGTGACTAGTT-G-ATAGGCATTGCGTGACTT-GTTAGTAAG
1 GCATTGCGTGACTAGTTAGTA-AGGCATTGCGTGA-TTAGTTAGTAAG
21197250 GCATTGCGTGACTAGTTAGTAAGGCATTGCGTGATTAGTTAGTAAG
1 GCATTGCGTGACTAGTTAGTAAGGCATTGCGTGATTAGTTAGTAAG
*
21197296 GCATTACGTGACT
1 GCATTGCGTGACT
21197309 TAGGCATTAT
Statistics
Matches: 55, Mismatches: 1, Indels: 5
0.90 0.02 0.08
Matches are distributed among these distances:
45 19 0.35
46 35 0.64
47 1 0.02
ACGTcount: A:0.24, C:0.13, G:0.30, T:0.33
Consensus pattern (46 bp):
GCATTGCGTGACTAGTTAGTAAGGCATTGCGTGATTAGTTAGTAAG
Found at i:21197399 original size:22 final size:22
Alignment explanation
Indices: 21197319--21197397 Score: 88
Period size: 22 Copynumber: 3.6 Consensus size: 22
21197309 TAGGCATTAT
*
21197319 TTAAAAATCAATCACGTAATGC
1 TTAAAAACCAATCACGTAATGC
* *
21197341 CTAAAAACCAATCACGCAATG-
1 TTAAAAACCAATCACGTAATGC
** *
21197362 TCGAAAACCAATCATGTAATGC
1 TTAAAAACCAATCACGTAATGC
*
21197384 TTAAAAATCAATCA
1 TTAAAAACCAATCA
21197398 TGCAGTGATT
Statistics
Matches: 45, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
21 16 0.36
22 29 0.64
ACGTcount: A:0.47, C:0.22, G:0.09, T:0.23
Consensus pattern (22 bp):
TTAAAAACCAATCACGTAATGC
Found at i:21197409 original size:22 final size:22
Alignment explanation
Indices: 21197319--21197409 Score: 67
Period size: 22 Copynumber: 4.2 Consensus size: 22
21197309 TAGGCATTAT
* * * *
21197319 TTAAAAATCAATCACGTAATGC
1 TTAAAAACCAATCATGCAATGA
* *
21197341 CTAAAAACCAATCACGCAATG-
1 TTAAAAACCAATCATGCAATGA
** * *
21197362 TCGAAAACCAATCATGTAATGC
1 TTAAAAACCAATCATGCAATGA
* *
21197384 TTAAAAATCAATCATGCAGTGA
1 TTAAAAACCAATCATGCAATGA
21197406 TTAA
1 TTAA
21197410 GTCATGTAAT
Statistics
Matches: 54, Mismatches: 14, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
21 16 0.30
22 38 0.70
ACGTcount: A:0.45, C:0.20, G:0.11, T:0.24
Consensus pattern (22 bp):
TTAAAAACCAATCATGCAATGA
Found at i:21198906 original size:32 final size:32
Alignment explanation
Indices: 21198849--21198970 Score: 122
Period size: 32 Copynumber: 3.8 Consensus size: 32
21198839 GATTGTTAAA
*
21198849 GGTTGTGGTTGAG-CCTTGAAAAATCACTTCG
1 GGTTGTGGTTGAGCCCTTGAAAAATCACTTTG
* *
21198880 GGTTTTGGTTGAGCCCGTGAAAAATCA-TTGTG
1 GGTTGTGGTTGAGCCCTTGAAAAATCACTT-TG
* *
21198912 AAAGGTTGTGGTTGAGCCTTTGAAAAACCACTTTG
1 ---GGTTGTGGTTGAGCCCTTGAAAAATCACTTTG
* * *
21198947 GGTTTTGGTTGATCCCATGAAAAA
1 GGTTGTGGTTGAGCCCTTGAAAAA
21198971 CCATTGCTAA
Statistics
Matches: 74, Mismatches: 11, Indels: 11
0.77 0.11 0.11
Matches are distributed among these distances:
31 14 0.19
32 33 0.45
35 25 0.34
36 2 0.03
ACGTcount: A:0.25, C:0.14, G:0.28, T:0.33
Consensus pattern (32 bp):
GGTTGTGGTTGAGCCCTTGAAAAATCACTTTG
Found at i:21198929 original size:35 final size:35
Alignment explanation
Indices: 21198840--21199017 Score: 128
Period size: 35 Copynumber: 5.3 Consensus size: 35
21198830 GGATAGCTTG
* *
21198840 ATTGTTAAAGGTTGTGGTTGAG-CCTTGAAAAATC
1 ATTGTGAAAGGTTGTGGTTGAGCCCTTGAAAAACC
* * * *
21198874 ACTT-CG---GGTTTTGGTTGAGCCCGTGAAAAATC
1 A-TTGTGAAAGGTTGTGGTTGAGCCCTTGAAAAACC
*
21198906 ATTGTGAAAGGTTGTGGTTGAGCCTTTGAAAAACC
1 ATTGTGAAAGGTTGTGGTTGAGCCCTTGAAAAACC
* * *
21198941 ACTT-TG---GGTTTTGGTTGATCCCATGAAAAACC
1 A-TTGTGAAAGGTTGTGGTTGAGCCCTTGAAAAACC
21198973 ATTGCT-AAAGGTTGTGGTTGAG-CC-TGCAAAAAGCC
1 ATTG-TGAAAGGTTGTGGTTGAGCCCTTG-AAAAA-CC
*
21199008 ATTGTAAAAG
1 ATTGTGAAAG
21199018 CTTGGTAGAA
Statistics
Matches: 114, Mismatches: 15, Indels: 29
0.72 0.09 0.18
Matches are distributed among these distances:
31 16 0.14
32 36 0.32
33 3 0.03
34 9 0.08
35 48 0.42
36 2 0.02
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.31
Consensus pattern (35 bp):
ATTGTGAAAGGTTGTGGTTGAGCCCTTGAAAAACC
Found at i:21198957 original size:67 final size:66
Alignment explanation
Indices: 21198840--21198997 Score: 237
Period size: 67 Copynumber: 2.4 Consensus size: 66
21198830 GGATAGCTTG
* *
21198840 ATTGTTAAAGGTTGTGGTTGAGCC-TTGAAAAATCACTTCGGGTTTTGGTTGAGCCCGTGAAAAA
1 ATTG-TAAAGGTTGTGGTTGAGCCTTTGAAAAACCACTTCGGGTTTTGGTTGAGCCCATGAAAAA
*
21198904 TC
65 CC
* *
21198906 ATTGTGAAAGGTTGTGGTTGAGCCTTTGAAAAACCACTTTGGGTTTTGGTTGATCCCATGAAAAA
1 ATTGT-AAAGGTTGTGGTTGAGCCTTTGAAAAACCACTTCGGGTTTTGGTTGAGCCCATGAAAAA
21198971 CC
65 CC
21198973 ATTGCTAAAGGTTGTGGTTGAGCCT
1 ATTG-TAAAGGTTGTGGTTGAGCCT
21198998 GCAAAAAGCC
Statistics
Matches: 84, Mismatches: 5, Indels: 5
0.89 0.05 0.05
Matches are distributed among these distances:
65 1 0.01
66 22 0.26
67 60 0.71
68 1 0.01
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.34
Consensus pattern (66 bp):
ATTGTAAAGGTTGTGGTTGAGCCTTTGAAAAACCACTTCGGGTTTTGGTTGAGCCCATGAAAAAC
C
Found at i:21203648 original size:19 final size:18
Alignment explanation
Indices: 21203613--21203648 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
21203603 CTACTGGTGC
*
21203613 CATGCTGATATTGATTTA
1 CATGCTGATAATGATTTA
21203631 CATGCTGATAAATGATTT
1 CATGCTGAT-AATGATTT
21203649 TTGTTATGGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.31, C:0.11, G:0.17, T:0.42
Consensus pattern (18 bp):
CATGCTGATAATGATTTA
Found at i:21204902 original size:35 final size:35
Alignment explanation
Indices: 21204812--21205051 Score: 202
Period size: 35 Copynumber: 7.1 Consensus size: 35
21204802 GGATGGCTTG
* *
21204812 ATTGTTAAAGGTTGTGGTTGAGCCT-TGGAAAACC
1 ATTGTGAAAGGTTGTGGTTGAGCCTGTGAAAAACC
*
21204846 ACTT-TG---GGTTTTGGTTGAGCCTGTGAAAAACC
1 A-TTGTGAAAGGTTGTGGTTGAGCCTGTGAAAAACC
* * *
21204878 ATTGTGAAAAGTTGTGGTTAAGCCTTTGAAAAACC
1 ATTGTGAAAGGTTGTGGTTGAGCCTGTGAAAAACC
* * * *
21204913 ATTTTG---GGTTTTGGTTGATCCCGTGAAAAACC
1 ATTGTGAAAGGTTGTGGTTGAGCCTGTGAAAAACC
*
21204945 ATTGTGAAAGGTTGTGGTTGAGCCTTTGAAAAACC
1 ATTGTGAAAGGTTGTGGTTGAGCCTGTGAAAAACC
* * *
21204980 ACTT-TG---GGTTTTGGTTGA-TCTCGTGAAAAATC
1 A-TTGTGAAAGGTTGTGGTTGAGCCT-GTGAAAAACC
* *
21205012 ATTGCT-AAAGGTTGTGGTTGAGCATGCGAAAAACC
1 ATTG-TGAAAGGTTGTGGTTGAGCCTGTGAAAAACC
21205047 ATTGT
1 ATTGT
21205052 AAAAACTTGG
Statistics
Matches: 161, Mismatches: 28, Indels: 34
0.72 0.13 0.15
Matches are distributed among these distances:
31 21 0.13
32 56 0.35
33 1 0.01
34 3 0.02
35 77 0.48
36 3 0.02
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.34
Consensus pattern (35 bp):
ATTGTGAAAGGTTGTGGTTGAGCCTGTGAAAAACC
Found at i:21204939 original size:67 final size:67
Alignment explanation
Indices: 21204812--21205034 Score: 342
Period size: 67 Copynumber: 3.3 Consensus size: 67
21204802 GGATGGCTTG
* * * *
21204812 ATTGTTAAAGGTTGTGGTTGAGCC-TTGGAAAACCACTTTGGGTTTTGGTTGAGCCTGTGAAAAA
1 ATTGTGAAAGGTTGTGGTTGAGCCTTTGAAAAACCACTTTGGGTTTTGGTTGATCCCGTGAAAAA
21204876 CC
66 CC
* * *
21204878 ATTGTGAAAAGTTGTGGTTAAGCCTTTGAAAAACCATTTTGGGTTTTGGTTGATCCCGTGAAAAA
1 ATTGTGAAAGGTTGTGGTTGAGCCTTTGAAAAACCACTTTGGGTTTTGGTTGATCCCGTGAAAAA
21204943 CC
66 CC
*
21204945 ATTGTGAAAGGTTGTGGTTGAGCCTTTGAAAAACCACTTTGGGTTTTGGTTGATCTCGTGAAAAA
1 ATTGTGAAAGGTTGTGGTTGAGCCTTTGAAAAACCACTTTGGGTTTTGGTTGATCCCGTGAAAAA
*
21205010 TC
66 CC
21205012 ATTGCT-AAAGGTTGTGGTTGAGC
1 ATTG-TGAAAGGTTGTGGTTGAGC
21205035 ATGCGAAAAA
Statistics
Matches: 143, Mismatches: 12, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
66 21 0.15
67 121 0.85
68 1 0.01
ACGTcount: A:0.26, C:0.13, G:0.27, T:0.35
Consensus pattern (67 bp):
ATTGTGAAAGGTTGTGGTTGAGCCTTTGAAAAACCACTTTGGGTTTTGGTTGATCCCGTGAAAAA
CC
Found at i:21204940 original size:32 final size:32
Alignment explanation
Indices: 21204821--21205014 Score: 167
Period size: 32 Copynumber: 5.9 Consensus size: 32
21204811 GATTGTTAAA
* * *
21204821 GGTTGTGGTTGAGCCT-TGGAAAACCACTTTG
1 GGTTTTGGTTGAGCCTGTGAAAAACCATTTTG
*
21204852 GGTTTTGGTTGAGCCTGTGAAAAACCATTGTG
1 GGTTTTGGTTGAGCCTGTGAAAAACCATTTTG
* * * *
21204884 AAAAGTTGTGGTTAAGCCTTTGAAAAACCATTTTG
1 ---GGTTTTGGTTGAGCCTGTGAAAAACCATTTTG
* * *
21204919 GGTTTTGGTTGATCCCGTGAAAAACCATTGTG
1 GGTTTTGGTTGAGCCTGTGAAAAACCATTTTG
* * *
21204951 AAAGGTTGTGGTTGAGCCTTTGAAAAACCACTTTG
1 ---GGTTTTGGTTGAGCCTGTGAAAAACCATTTTG
* *
21204986 GGTTTTGGTTGA-TCTCGTGAAAAATCATT
1 GGTTTTGGTTGAGCCT-GTGAAAAACCATT
21205015 GCTAAAGGTT
Statistics
Matches: 128, Mismatches: 27, Indels: 15
0.75 0.16 0.09
Matches are distributed among these distances:
31 17 0.13
32 58 0.45
35 53 0.41
ACGTcount: A:0.25, C:0.13, G:0.27, T:0.35
Consensus pattern (32 bp):
GGTTTTGGTTGAGCCTGTGAAAAACCATTTTG
Found at i:21206285 original size:21 final size:21
Alignment explanation
Indices: 21206261--21206301 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
21206251 CTTAAAATAG
21206261 TATAACCTTTATGTAGGCTTA
1 TATAACCTTTATGTAGGCTTA
21206282 TATAACCTTTATGTAGGCTT
1 TATAACCTTTATGTAGGCTT
21206302 TACATAGCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.44
Consensus pattern (21 bp):
TATAACCTTTATGTAGGCTTA
Found at i:21208640 original size:43 final size:43
Alignment explanation
Indices: 21208527--21208642 Score: 144
Period size: 43 Copynumber: 2.7 Consensus size: 43
21208517 CAGTTGGCAG
* * ** * *
21208527 AAACTAGATAGAGCGAGAGTGGAGACTAGACGGCAGTCGGTAA
1 AAACCAGAAAGAGCGAGAGTGGAGACGGGACGACAATCGGTAA
* *
21208570 AAACCAGAAA-AGGCGAGAGTTGAGACGGGACGACAATTGGTAA
1 AAACCAGAAAGA-GCGAGAGTGGAGACGGGACGACAATCGGTAA
21208613 AAACCAGAAAGAGCGAGAGTGGAGACGGGA
1 AAACCAGAAAGAGCGAGAGTGGAGACGGGA
21208643 TGGCGGTCAG
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
42 1 0.02
43 60 0.97
44 1 0.02
ACGTcount: A:0.41, C:0.14, G:0.35, T:0.10
Consensus pattern (43 bp):
AAACCAGAAAGAGCGAGAGTGGAGACGGGACGACAATCGGTAA
Found at i:21212053 original size:16 final size:16
Alignment explanation
Indices: 21212032--21212227 Score: 142
Period size: 16 Copynumber: 12.4 Consensus size: 16
21212022 TTATTTGTAA
21212032 ATTTTAAAATATTAAT
1 ATTTTAAAATATTAAT
*
21212048 ATTTTATATATACTTTAA-
1 ATTTTA-AAATA--TTAAT
** *
21212066 ACCTTATTAATATTAAT
1 ATTTTA-AAATATTAAT
* *
21212083 ATGATTAAAATATTAAA
1 AT-TTTAAAATATTAAT
*
21212100 ATATTAAAATATTAAT
1 ATTTTAAAATATTAAT
21212116 ATTTT--AATCA-TAAT
1 ATTTTAAAAT-ATTAAT
* *
21212130 AATGTTAAATTA-TAA-
1 -ATTTTAAAATATTAAT
*
21212145 A---GAAAATATTAAT
1 ATTTTAAAATATTAAT
21212158 ATTTTAAAATATTAAT
1 ATTTTAAAATATTAAT
*
21212174 GTTTTAAAATATTAAT
1 ATTTTAAAATATTAAT
*
21212190 ATTTTAAATTATTAAT
1 ATTTTAAAATATTAAT
*
21212206 A-TTTAAATTATTAAT
1 ATTTTAAAATATTAAT
21212221 ATTTTAA
1 ATTTTAA
21212228 TAAATTATAA
Statistics
Matches: 146, Mismatches: 19, Indels: 30
0.75 0.10 0.15
Matches are distributed among these distances:
11 5 0.03
12 3 0.02
13 1 0.01
14 8 0.05
15 20 0.14
16 77 0.53
17 17 0.12
18 11 0.08
19 4 0.03
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.47
Consensus pattern (16 bp):
ATTTTAAAATATTAAT
Found at i:21212099 original size:8 final size:8
Alignment explanation
Indices: 21212074--21212219 Score: 66
Period size: 8 Copynumber: 18.0 Consensus size: 8
21212064 AAACCTTATT
21212074 AATATTAA
1 AATATTAA
*
21212082 TATGATTAA
1 AAT-ATTAA
21212091 AATATTAA
1 AATATTAA
21212099 AATATTAA
1 AATATTAA
21212107 AATATT--
1 AATATTAA
**
21212113 AATATTTT
1 AATATTAA
21212121 AATCA-TAA
1 AAT-ATTAA
*
21212129 TAATGTTAA
1 -AATATTAA
**
21212138 ATTATAAAGAA
1 A--AT-ATTAA
21212149 AATATTAA
1 AATATTAA
* *
21212157 TATTTTAA
1 AATATTAA
21212165 AATATTAA
1 AATATTAA
** *
21212173 TGTTTTAA
1 AATATTAA
21212181 AATATTAA
1 AATATTAA
* *
21212189 TATTTTAA
1 AATATTAA
*
21212197 ATTATTAA
1 AATATTAA
*
21212205 TAT-TTAA
1 AATATTAA
*
21212212 ATTATTAA
1 AATATTAA
21212220 TATTTTAATA
Statistics
Matches: 99, Mismatches: 29, Indels: 20
0.67 0.20 0.14
Matches are distributed among these distances:
6 6 0.06
7 5 0.05
8 67 0.68
9 16 0.16
10 2 0.02
11 3 0.03
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (8 bp):
AATATTAA
Found at i:21212186 original size:32 final size:31
Alignment explanation
Indices: 21212074--21212227 Score: 140
Period size: 31 Copynumber: 5.0 Consensus size: 31
21212064 AAACCTTATT
* *
21212074 AATATTAATATGATTAAAATATTAAAATATTAA
1 AATATTAATAT--TTAAAATATTAATATTTTAA
* *
21212107 AATATTAATATTT-TAATCA-TAATAATGTTAA
1 AATATTAATATTTAAAAT-ATTAAT-ATTTTAA
* *
21212138 ATTA-TAA-A--GAAAATATTAATATTTTAA
1 AATATTAATATTTAAAATATTAATATTTTAA
*
21212165 AATATTAATGTTTTAAAATATTAATATTTTAA
1 AATATTAAT-ATTTAAAATATTAATATTTTAA
* *
21212197 ATTATTAATATTTAAATTATTAATATTTTAA
1 AATATTAATATTTAAAATATTAATATTTTAA
21212228 TAAATTATAA
Statistics
Matches: 99, Mismatches: 13, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
27 10 0.10
28 10 0.10
29 1 0.01
30 9 0.09
31 32 0.32
32 26 0.26
33 11 0.11
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.46
Consensus pattern (31 bp):
AATATTAATATTTAAAATATTAATATTTTAA
Found at i:21212227 original size:8 final size:8
Alignment explanation
Indices: 21212153--21212229 Score: 70
Period size: 8 Copynumber: 9.8 Consensus size: 8
21212143 AAAGAAAATA
21212153 TTAATATT
1 TTAATATT
* *
21212161 TTAAAATA
1 TTAATATT
*
21212169 TTAATGTT
1 TTAATATT
* *
21212177 TTAAAATA
1 TTAATATT
21212185 TTAATATT
1 TTAATATT
21212193 TTAA-ATT
1 TTAATATT
21212200 ATTAATA-T
1 -TTAATATT
21212208 TTAA-ATT
1 TTAATATT
21212215 ATTAATATT
1 -TTAATATT
21212224 TTAATA
1 TTAATA
21212230 AATTATAATT
Statistics
Matches: 54, Mismatches: 10, Indels: 10
0.73 0.14 0.14
Matches are distributed among these distances:
6 1 0.02
7 8 0.15
8 41 0.76
9 4 0.07
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.53
Consensus pattern (8 bp):
TTAATATT
Done.