Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr4
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 31929104
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 1434590 characters in sequence are not A, C, G, or T
File 59 of 82
Found at i:21212246 original size:31 final size:31
Alignment explanation
Indices: 21212151--21212248 Score: 94
Period size: 31 Copynumber: 3.1 Consensus size: 31
21212141 ATAAAGAAAA
** *
21212151 TATTAATATTTTAAA-ATATTAATGTTTTAAAA
1 TATTAATATTTTAAATA-ATTAAT-AATTAAAT
* *
21212183 TATTAATATTTTAAATTATTAATATTTAAAT
1 TATTAATATTTTAAATAATTAATAATTAAAT
21212214 TATTAATATTTT-AATAAATT-ATAATTATAAT
1 TATTAATATTTTAAAT-AATTAATAATTA-AAT
21212245 TATT
1 TATT
21212249 TAAAAAAAAA
Statistics
Matches: 58, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
30 9 0.16
31 28 0.48
32 21 0.36
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (31 bp):
TATTAATATTTTAAATAATTAATAATTAAAT
Found at i:21223307 original size:29 final size:29
Alignment explanation
Indices: 21223265--21223321 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
21223255 CAGTTCAGTG
21223265 TTTTAAACTAAAAGATTGTCATGAAGATA
1 TTTTAAACTAAAAGATTGTCATGAAGATA
* *
21223294 TTTTGAACTAAAAGGTTGTCATGAAGAT
1 TTTTAAACTAAAAGATTGTCATGAAGAT
21223322 TTGAAGACAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.40, C:0.07, G:0.18, T:0.35
Consensus pattern (29 bp):
TTTTAAACTAAAAGATTGTCATGAAGATA
Found at i:21226343 original size:25 final size:26
Alignment explanation
Indices: 21226300--21226348 Score: 75
Period size: 25 Copynumber: 1.9 Consensus size: 26
21226290 AATTACAAAT
21226300 TTAAACTTATAAAATTAATATTTTAA
1 TTAAACTTATAAAATTAATATTTTAA
21226326 TTAAA-TTA-AAATATTAATATTTT
1 TTAAACTTATAAA-ATTAATATTTT
21226349 CATATTTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 3 0.14
25 14 0.64
26 5 0.23
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (26 bp):
TTAAACTTATAAAATTAATATTTTAA
Found at i:21227213 original size:26 final size:27
Alignment explanation
Indices: 21227173--21227228 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 27
21227163 AGTATTTTAT
**
21227173 AATATTAATTATTAAATTATAA-ATAA
1 AATATTAATTATTAAAAAATAATATAA
21227199 AATATTAA-TATTTAAAAAATAATATAA
1 AATATTAATTA-TTAAAAAATAATATAA
21227226 AAT
1 AAT
21227229 TAAATAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 2 0.08
26 17 0.65
27 7 0.27
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (27 bp):
AATATTAATTATTAAAAAATAATATAA
Found at i:21227243 original size:27 final size:26
Alignment explanation
Indices: 21227173--21227243 Score: 63
Period size: 26 Copynumber: 2.7 Consensus size: 26
21227163 AGTATTTTAT
* * **
21227173 AATATTAATTATTAAATTATAAATAA
1 AATATAAATAATTAAAAAATAAATAA
* *
21227199 AATATTAATATTTAAAAAATAATATAA
1 AATATAAATAATTAAAAAATAA-ATAA
*
21227226 AAT-TAAATAATTATAAAA
1 AATATAAATAATTAAAAAA
21227244 GATATTTTTA
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
26 30 0.81
27 7 0.19
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (26 bp):
AATATAAATAATTAAAAAATAAATAA
Found at i:21236620 original size:23 final size:23
Alignment explanation
Indices: 21236592--21236641 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
21236582 GGGTTTAACT
21236592 TTGCGTGACTGATTGATAGGTCA
1 TTGCGTGACTGATTGATAGGTCA
* **
21236615 TTGCGTGACTGGTTTTTAGGTCA
1 TTGCGTGACTGATTGATAGGTCA
21236638 TTGC
1 TTGC
21236642 ATTACGTGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.16, C:0.14, G:0.30, T:0.40
Consensus pattern (23 bp):
TTGCGTGACTGATTGATAGGTCA
Found at i:21240412 original size:26 final size:26
Alignment explanation
Indices: 21240382--21240431 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
21240372 AATATTATTC
*
21240382 TGTATAATTTCCATATTATTCTTTAT
1 TGTATAATTTACATATTATTCTTTAT
*
21240408 TGTATCATTTACATATTATTCTTT
1 TGTATAATTTACATATTATTCTTT
21240432 GTATTCATTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.12, G:0.04, T:0.58
Consensus pattern (26 bp):
TGTATAATTTACATATTATTCTTTAT
Found at i:21240766 original size:23 final size:23
Alignment explanation
Indices: 21240740--21240809 Score: 54
Period size: 23 Copynumber: 3.1 Consensus size: 23
21240730 TTTGAATCAA
*
21240740 GTCAGTAGTTAATATGGAATCGC
1 GTCAGTAGTAAATATGGAATCGC
* * * * *
21240763 GTCACTAATCCACT-TGGAATCGT
1 GTCAGTAGT-AAATATGGAATCGC
*
21240786 GTGAGTAGTAAATATGG-ATCGC
1 GTCAGTAGTAAATATGGAATCGC
21240808 GT
1 GT
21240810 GAACTGTTAA
Statistics
Matches: 34, Mismatches: 11, Indels: 5
0.68 0.22 0.10
Matches are distributed among these distances:
22 8 0.24
23 24 0.71
24 2 0.06
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.30
Consensus pattern (23 bp):
GTCAGTAGTAAATATGGAATCGC
Found at i:21244447 original size:78 final size:79
Alignment explanation
Indices: 21244359--21244520 Score: 245
Period size: 79 Copynumber: 2.1 Consensus size: 79
21244349 TTTGAGAGAG
* **
21244359 ACATCTTGTGTTTTAGATTTGCTTGT-CCCCCAGTCACCCCACTCAGTTTGCTTCATTGTACTGG
1 ACATCTTGTGTTTTAGATTTGCTTGTCCCCCCAATCACAACACTCAGTTTGCTTCATTGTACTGG
21244423 TCACAGCTGCTGCA
66 TCACAGCTGCTGCA
* * * *
21244437 ACATCTTGTGTTTTAGATTTGCTTGTCCCCCCAATCACAACAGTCATTTTGCTTCGTTGTTCTGG
1 ACATCTTGTGTTTTAGATTTGCTTGTCCCCCCAATCACAACACTCAGTTTGCTTCATTGTACTGG
*
21244502 TCATAGCTGCTGCA
66 TCACAGCTGCTGCA
21244516 ACATC
1 ACATC
21244521 ATCTGTTGCA
Statistics
Matches: 75, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
78 26 0.35
79 49 0.65
ACGTcount: A:0.18, C:0.28, G:0.17, T:0.37
Consensus pattern (79 bp):
ACATCTTGTGTTTTAGATTTGCTTGTCCCCCCAATCACAACACTCAGTTTGCTTCATTGTACTGG
TCACAGCTGCTGCA
Found at i:21247966 original size:118 final size:117
Alignment explanation
Indices: 21247791--21248184 Score: 512
Period size: 118 Copynumber: 3.4 Consensus size: 117
21247781 AATGCCTAAC
* * * ** * * **
21247791 AACTAGTGAACAAAAGCCCCAAAACAAAAGGTGAATTGCATAAGTCACACGTGACCACTCTCGTA
1 AACTACTGAACAAAAGCCTCAAAACAACACATGAATTGCACAAGTCACGCGCCACCACTCTCG-A
* ** *
21247856 ATACATAACAACAGGTCACGCAATATATAAAAATTAGTCACGCAAACCTAAAA
65 ATACATAACAACAAGTCACGCAATATATAAAAACCAGTCACGCAAGCCTAAAA
*
21247909 AACTACTGAACAAAAGCCTCAAAACAACACATGAATTGCACAAGTCACGCACCACCACTCTCGCA
1 AACTACTGAACAAAAGCCTCAAAACAACACATGAATTGCACAAGTCACGCGCCACCACTCTCG-A
* *
21247974 ATACATAACAACAAGTCACACAATATATAAAAACCAATCACGCAAGCCTAAAA
65 ATACATAACAACAAGTCACGCAATATATAAAAACCAGTCACGCAAGCCTAAAA
* * *
21248027 AACTACTGAACAAAAGCCTCAAAACAACACATGAATTACACAAGTCATGCGCCACCATTCTCG--
1 AACTACTGAACAAAAGCCTCAAAACAACACATGAATTGCACAAGTCACGCGCCACCACTCTCGAA
* * *
21248090 --C-T-ACAACAAGTAATGCAATATATAAAAACCAGTCACGCATTGCCTAAAA
66 TACATAACAACAAGTCACGCAATATATAAAAACCAGTCACGCA-AGCCTAAAA
*
21248139 AACTACTGAACAAAAGCCTCAAAACAATACATGAATTGCACAAGTC
1 AACTACTGAACAAAAGCCTCAAAACAACACATGAATTGCACAAGTC
21248185 GGTCACGCAT
Statistics
Matches: 247, Mismatches: 28, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
111 33 0.13
112 53 0.21
113 1 0.00
118 160 0.65
ACGTcount: A:0.46, C:0.26, G:0.11, T:0.17
Consensus pattern (117 bp):
AACTACTGAACAAAAGCCTCAAAACAACACATGAATTGCACAAGTCACGCGCCACCACTCTCGAA
TACATAACAACAAGTCACGCAATATATAAAAACCAGTCACGCAAGCCTAAAA
Found at i:21249531 original size:308 final size:311
Alignment explanation
Indices: 21248961--21249577 Score: 925
Period size: 308 Copynumber: 2.0 Consensus size: 311
21248951 TTAATGGTTC
* * *
21248961 CCTTTATTTATAAGCATGAATGTTGACTCTTCATTTTCTACACCCATATCAGTGCAATGAAGAGG
1 CCTTTATTTATAAGCATGAATGTTGACTCTCCATTTTCTACACCCATATAACTGCAATGAAGAGG
* *
21249026 GGCTGAATTGGTTATTATTAAGTACCTGTTCAGCCTGACGTTTCATCTTATCTACCTCTTTCAAA
66 GGCTGAATTGGTTATTA-TAAGTACCTGTTCAGCCTGACATTTCATCTTATCTACCTCTTGCAAA
* *
21249091 TAAAAGCCAAGCCAAACATCATTTTTCAAGAAATTCTTAATAAAAAGTAGCTTAAAGCTTTTCTC
130 CAAAAGCCAAGCCAAACATCATTTTTCAAGAAATTCTTAATAAAAAGCAGCTTAAAGCTTTTCTC
* *****
21249156 TCTTTTTCACTAATCAAAAGGATTTTAATGTTACATATATATCGTTTCCTCTTTTTTCTTCTTTT
195 TCTTTTTCACTAATCAAAAGGATTTTAATGTTACATATATATCATTTCCTCAACGATCTTCTTTT
**
21249221 TTCTTAATTTAAGCATCATGCTCCGATTGCTTGATAGACCAACCAAAATTTT
260 TTCTTAATCCAAGCATCATGCTCCGATTGCTTGATAGACCAACCAAAATTTT
* * *
21249273 CCTTTATTTATAGGCATGAATGTTGACTCTCCGTTTTCTACACCCATATAACTGCAATGAAGGGG
1 CCTTTATTTATAAGCATGAATGTTGACTCTCCATTTTCTACACCCATATAACTGCAATGAAGAGG
* ** * * *
21249338 GGTTGAATTGGTTATTA-AA-TACCTGTTTGGCCTGGCATTTCATCTTATCTGCCTCTTGCAAGC
66 GGCTGAATTGGTTATTATAAGTACCTGTTCAGCCTGACATTTCATCTTATCTACCTCTTGCAAAC
* * * * *
21249401 AAAAGTCAGGCCAAACATCATTTTTCAAGAGATTCTTAATGAAAAGCAGC-TAAAGGTTTTCTCT
131 AAAAGCCAAGCCAAACATCATTTTTCAAGAAATTCTTAATAAAAAGCAGCTTAAAGCTTTTCTCT
21249465 CTTTTTCACTAATCAAAAGGATTTTAATGTTACATATATATCATTTCCTCAACGATCTTCTTTTT
196 CTTTTTCACTAATCAAAAGGATTTTAATGTTACATATATATCATTTCCTCAACGATCTTCTTTTT
* *
21249530 TCTTAATCCAAGCATCATGGTCCGATTGCTTGGTAGACCAACCAAAAT
261 TCTTAATCCAAGCATCATGCTCCGATTGCTTGATAGACCAACCAAAAT
21249578 CTTATACTAT
Statistics
Matches: 274, Mismatches: 31, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
308 116 0.42
309 81 0.30
310 2 0.01
312 75 0.27
ACGTcount: A:0.29, C:0.20, G:0.13, T:0.38
Consensus pattern (311 bp):
CCTTTATTTATAAGCATGAATGTTGACTCTCCATTTTCTACACCCATATAACTGCAATGAAGAGG
GGCTGAATTGGTTATTATAAGTACCTGTTCAGCCTGACATTTCATCTTATCTACCTCTTGCAAAC
AAAAGCCAAGCCAAACATCATTTTTCAAGAAATTCTTAATAAAAAGCAGCTTAAAGCTTTTCTCT
CTTTTTCACTAATCAAAAGGATTTTAATGTTACATATATATCATTTCCTCAACGATCTTCTTTTT
TCTTAATCCAAGCATCATGCTCCGATTGCTTGATAGACCAACCAAAATTTT
Found at i:21249960 original size:40 final size:40
Alignment explanation
Indices: 21249896--21250065 Score: 151
Period size: 48 Copynumber: 3.9 Consensus size: 40
21249886 TACAAACAGG
* * *
21249896 TCACACAATGCTCAACAAATATTCAGTCAAGTAATGCCTA
1 TCACGCAACGCTCAACAAATATTCAGTCACGTAATGCCTA
21249936 TCACGCAACGCTCAACAAATATTCAGTCACGTAATGCCTA
1 TCACGCAACGCTCAACAAATATTCAGTCACGTAATGCCTA
*
21249976 TAAACAAGTCACACAATGCTCAACAAATATTCAGTCACGTAATGCCTA
1 T---CACG-CA-AC---GCTCAACAAATATTCAGTCACGTAATGCCTA
*
21250024 TAAACAAGTCACACAATGCTCAACAAATATTCAGTCACGTAA
1 T---CACG-CA-AC---GCTCAACAAATATTCAGTCACGTAA
21250066 CATTCAGTCA
Statistics
Matches: 118, Mismatches: 4, Indels: 8
0.91 0.03 0.06
Matches are distributed among these distances:
40 38 0.32
43 3 0.03
44 2 0.02
45 2 0.02
48 73 0.62
ACGTcount: A:0.41, C:0.26, G:0.11, T:0.23
Consensus pattern (40 bp):
TCACGCAACGCTCAACAAATATTCAGTCACGTAATGCCTA
Found at i:21249993 original size:22 final size:22
Alignment explanation
Indices: 21249968--21250042 Score: 69
Period size: 22 Copynumber: 3.2 Consensus size: 22
21249958 TCAGTCACGT
21249968 AATGCCTATAAACAAGTCACAC
1 AATGCCTATAAACAAGTCACAC
* * * **
21249990 AATGCTCAACAAATATTCAGTCACGT
1 AATGC-CTATAAACA---AGTCACAC
21250016 AATGCCTATAAACAAGTCACAC
1 AATGCCTATAAACAAGTCACAC
21250038 AATGC
1 AATGC
21250043 TCAACAAATA
Statistics
Matches: 39, Mismatches: 10, Indels: 8
0.68 0.18 0.14
Matches are distributed among these distances:
22 16 0.41
23 6 0.15
25 6 0.15
26 11 0.28
ACGTcount: A:0.43, C:0.25, G:0.11, T:0.21
Consensus pattern (22 bp):
AATGCCTATAAACAAGTCACAC
Found at i:21249996 original size:88 final size:92
Alignment explanation
Indices: 21249872--21250066 Score: 272
Period size: 88 Copynumber: 2.1 Consensus size: 92
21249862 AGGTAGCTAA
* *
21249872 AGTCACGCAACGCCTACAAACAGGTCACACAATGCTCAACAAATATTCAGTCAAGTAATGCCTAT
1 AGTCACGTAACGCCTACAAACAAGTCACACAATGCTCAACAAATATTCAGTCAAGTAATGCCTAT
*
21249937 -CACG-CA-AC-GCTCAACAAATATTC
66 ACAAGTCACACAGCTCAACAAATATTC
* * *
21249960 AGTCACGTAATGCCTATAAACAAGTCACACAATGCTCAACAAATATTCAGTCACGTAATGCCTAT
1 AGTCACGTAACGCCTACAAACAAGTCACACAATGCTCAACAAATATTCAGTCAAGTAATGCCTAT
21250025 AAACAAGTCACACAATGCTCAACAAATATTC
66 --ACAAGTCACAC-A-GCTCAACAAATATTC
21250056 AGTCACGTAAC
1 AGTCACGTAAC
21250067 ATTCAGTCAC
Statistics
Matches: 92, Mismatches: 7, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
88 60 0.65
91 3 0.03
92 2 0.02
93 2 0.02
96 25 0.27
ACGTcount: A:0.40, C:0.27, G:0.12, T:0.21
Consensus pattern (92 bp):
AGTCACGTAACGCCTACAAACAAGTCACACAATGCTCAACAAATATTCAGTCAAGTAATGCCTAT
ACAAGTCACACAGCTCAACAAATATTC
Found at i:21250016 original size:48 final size:48
Alignment explanation
Indices: 21249936--21250065 Score: 233
Period size: 48 Copynumber: 2.7 Consensus size: 48
21249926 GTAATGCCTA
*
21249936 TCACGCAACGCTCAACAAATATTCAGTCACGTAATGCCTATAAACAAG
1 TCACGCAATGCTCAACAAATATTCAGTCACGTAATGCCTATAAACAAG
*
21249984 TCACACAATGCTCAACAAATATTCAGTCACGTAATGCCTATAAACAAG
1 TCACGCAATGCTCAACAAATATTCAGTCACGTAATGCCTATAAACAAG
*
21250032 TCACACAATGCTCAACAAATATTCAGTCACGTAA
1 TCACGCAATGCTCAACAAATATTCAGTCACGTAA
21250066 CATTCAGTCA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 80 1.00
ACGTcount: A:0.41, C:0.26, G:0.11, T:0.22
Consensus pattern (48 bp):
TCACGCAATGCTCAACAAATATTCAGTCACGTAATGCCTATAAACAAG
Found at i:21250072 original size:15 final size:15
Alignment explanation
Indices: 21250052--21250080 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
21250042 CTCAACAAAT
21250052 ATTCAGTCACGTAAC
1 ATTCAGTCACGTAAC
21250067 ATTCAGTCACGTAA
1 ATTCAGTCACGTAA
21250081 TGCCTGTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (15 bp):
ATTCAGTCACGTAAC
Found at i:21250120 original size:103 final size:103
Alignment explanation
Indices: 21249993--21250187 Score: 320
Period size: 103 Copynumber: 1.9 Consensus size: 103
21249983 GTCACACAAT
21249993 GCTCAACAAATATTCAGTCACGTAATGCCTATAAACAAGTCACACAATGCTCAACAAATATTCAG
1 GCTCAACAAATATTCAGTCACGTAATGCCTATAAACAAGTCACACAATGCTCAACAAATATTCAG
* *
21250058 TCACGTAACATTCA-GTCACGTAATGCCTGTCATGCAAC
66 TCACATAACATTCATG-CACCTAATGCCTGTCATGCAAC
***
21250096 GCTCAACAAATATTCAGTCACGTAATGCCTATAAACAAGTCATGTAATGCTCAACAAATATTCAG
1 GCTCAACAAATATTCAGTCACGTAATGCCTATAAACAAGTCACACAATGCTCAACAAATATTCAG
*
21250161 TCACATAATATTCATGCACCTAATGCC
66 TCACATAACATTCATGCACCTAATGCC
21250188 AAATAAATAG
Statistics
Matches: 85, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
103 84 0.99
104 1 0.01
ACGTcount: A:0.37, C:0.25, G:0.12, T:0.26
Consensus pattern (103 bp):
GCTCAACAAATATTCAGTCACGTAATGCCTATAAACAAGTCACACAATGCTCAACAAATATTCAG
TCACATAACATTCATGCACCTAATGCCTGTCATGCAAC
Found at i:21250169 original size:26 final size:26
Alignment explanation
Indices: 21249936--21250169 Score: 105
Period size: 26 Copynumber: 9.3 Consensus size: 26
21249926 GTAATGCCTA
* *
21249936 TCACGCAACGCTCAACAAATATTCAG
1 TCACGTAATGCTCAACAAATATTCAG
* * *
21249962 TCACGTAATGC-CTATAAACA---AG
1 TCACGTAATGCTCAACAAATATTCAG
**
21249984 TCACACAATGCTCAACAAATATTCAG
1 TCACGTAATGCTCAACAAATATTCAG
* * *
21250010 TCACGTAATGC-CTATAAACA---AG
1 TCACGTAATGCTCAACAAATATTCAG
**
21250032 TCACACAATGCTCAACAAATATTCAG
1 TCACGTAATGCTCAACAAATATTCAG
*** * ** * *
21250058 TCACGTAACATTCAGTCACGTAATGCCTG
1 TCACGTAATGCTCA-ACAAAT-AT-TCAG
* * *
21250087 TCATGCAACGCTCAACAAATATTCAG
1 TCACGTAATGCTCAACAAATATTCAG
* * *
21250113 TCACGTAATGC-CTATAAACA---AG
1 TCACGTAATGCTCAACAAATATTCAG
*
21250135 TCATGTAATGCTCAACAAATATTCAG
1 TCACGTAATGCTCAACAAATATTCAG
*
21250161 TCACATAAT
1 TCACGTAAT
21250170 ATTCATGCAC
Statistics
Matches: 142, Mismatches: 51, Indels: 30
0.64 0.23 0.13
Matches are distributed among these distances:
22 34 0.24
23 18 0.13
25 18 0.13
26 50 0.35
27 5 0.04
28 5 0.04
29 12 0.08
ACGTcount: A:0.39, C:0.25, G:0.12, T:0.24
Consensus pattern (26 bp):
TCACGTAATGCTCAACAAATATTCAG
Found at i:21255261 original size:15 final size:15
Alignment explanation
Indices: 21255241--21255271 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
21255231 GCACCACATT
21255241 TGCATCTTCAAAACC
1 TGCATCTTCAAAACC
*
21255256 TGCATCTTCGAAACC
1 TGCATCTTCAAAACC
21255271 T
1 T
21255272 ACTTCTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.29, C:0.32, G:0.10, T:0.29
Consensus pattern (15 bp):
TGCATCTTCAAAACC
Found at i:21259331 original size:46 final size:46
Alignment explanation
Indices: 21259264--21259357 Score: 170
Period size: 46 Copynumber: 2.0 Consensus size: 46
21259254 CATGGTTATG
*
21259264 AATGGTGGTGATATGCTTACATGGCACTCCTGCCTTTGAGTTCAAT
1 AATGGTGGTGATATGCTTACATGGCACTCCTGCCTTTAAGTTCAAT
*
21259310 AATGGTGGTGATATGCTTACATGGCACTTCTGCCTTTAAGTTCAAT
1 AATGGTGGTGATATGCTTACATGGCACTCCTGCCTTTAAGTTCAAT
21259356 AA
1 AA
21259358 ATTTACACTA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (46 bp):
AATGGTGGTGATATGCTTACATGGCACTCCTGCCTTTAAGTTCAAT
Found at i:21265434 original size:18 final size:16
Alignment explanation
Indices: 21265413--21265456 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
21265403 GCTATCTAAT
*
21265413 TTATCTAGACTATGTCAC
1 TTATCTAGACAATG--AC
21265431 TTATCTAAGACAATGAC
1 TTATCT-AGACAATGAC
21265448 TTATCTAGA
1 TTATCTAGA
21265457 TTATCTGCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 3 0.12
17 8 0.33
18 6 0.25
19 7 0.29
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.36
Consensus pattern (16 bp):
TTATCTAGACAATGAC
Found at i:21268677 original size:33 final size:33
Alignment explanation
Indices: 21268635--21268703 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 33
21268625 CATAATTGCT
* *
21268635 TCTACCTCTTCCTCGTGAATTTCTTCCTCTTCC
1 TCTACCTCTTCCACGTGAATTTCTTCCTCTACC
21268668 TCTACCTCTTCCACGTGAATTTCTTCCTCTACC
1 TCTACCTCTTCCACGTGAATTTCTTCCTCTACC
21268701 TCT
1 TCT
21268704 TCCAAATCTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.12, C:0.39, G:0.06, T:0.43
Consensus pattern (33 bp):
TCTACCTCTTCCACGTGAATTTCTTCCTCTACC
Found at i:21276104 original size:16 final size:16
Alignment explanation
Indices: 21276085--21276120 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
21276075 ATTTTTAATA
21276085 ATAATTTTATTTAAA-T
1 ATAATTTT-TTTAAAGT
21276101 ATAATTTTTTTAAAGT
1 ATAATTTTTTTAAAGT
21276117 ATAA
1 ATAA
21276121 ATAATTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 6 0.32
16 13 0.68
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (16 bp):
ATAATTTTTTTAAAGT
Found at i:21278158 original size:9 final size:9
Alignment explanation
Indices: 21278144--21278180 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
21278134 TGTTTTTTTA
*
21278144 TTATTTAAT
1 TTATTTATT
21278153 TTATTTATT
1 TTATTTATT
21278162 TTA-TT-TT
1 TTATTTATT
21278169 TTATTTATT
1 TTATTTATT
21278178 TTA
1 TTA
21278181 ATGTCATGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
7 5 0.20
8 4 0.16
9 16 0.64
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (9 bp):
TTATTTATT
Found at i:21278257 original size:11 final size:11
Alignment explanation
Indices: 21278241--21278273 Score: 57
Period size: 11 Copynumber: 2.9 Consensus size: 11
21278231 ATTATTATTA
21278241 TTTTTTATCAT
1 TTTTTTATCAT
21278252 TTTTTTATCAT
1 TTTTTTATCAT
21278263 TATTTTTATCA
1 T-TTTTTATCA
21278274 AGTAATTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.57
12 9 0.43
ACGTcount: A:0.21, C:0.09, G:0.00, T:0.70
Consensus pattern (11 bp):
TTTTTTATCAT
Found at i:21280654 original size:117 final size:115
Alignment explanation
Indices: 21280500--21280850 Score: 567
Period size: 117 Copynumber: 3.0 Consensus size: 115
21280490 ATGTAGTGTC
* * *
21280500 CTTAAGGATTATTTTTAACCTTGTAACCTTTCGGAGTATGAAACTAGGTGCAAAAGGATTAAAGT
1 CTTAAGGATAATTTTTAACCTT-TAACCTTTC-GAGTATGAAACTCGGTGCAAAAAGATTAAAGT
*
21280565 GGTTATCCTCCAAAATTCAACAAACTCTTTCTAATTAGTTTGCACAAACTAT
64 GGTTATCCTCCAAAATTCAACAAACTCTTTCTGATTAGTTTGCACAAACTAT
21280617 CTTAAGGATAATTTTTAACCTTTCAACCTTTCAGAGTATGAAACTCGGTGCAAAAAGATTAAAGT
1 CTTAAGGATAATTTTTAACCTTT-AACCTTTC-GAGTATGAAACTCGGTGCAAAAAGATTAAAGT
* *
21280682 GGTTATCCTTCAAAATTCAACAAACTCTTTCTGATTAGTTTACACAAACTAT
64 GGTTATCCTCCAAAATTCAACAAACTCTTTCTGATTAGTTTGCACAAACTAT
*
21280734 CTTAAGGATAATTTTTAACCTTTTAACCTTTCGAAGTATGAAACTCGATGCAAAAAGATTAAAGT
1 CTTAAGGATAATTTTTAACC-TTTAACCTTTCG-AGTATGAAACTCGGTGCAAAAAGATTAAAGT
* *
21280799 GGTTATCCTCCAAAATTTAACAAACTCATTCTGATTAGTTTGCACAAACTAT
64 GGTTATCCTCCAAAATTCAACAAACTCTTTCTGATTAGTTTGCACAAACTAT
21280851 AAAAAAACTC
Statistics
Matches: 219, Mismatches: 12, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
116 2 0.01
117 214 0.98
118 3 0.01
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (115 bp):
CTTAAGGATAATTTTTAACCTTTAACCTTTCGAGTATGAAACTCGGTGCAAAAAGATTAAAGTGG
TTATCCTCCAAAATTCAACAAACTCTTTCTGATTAGTTTGCACAAACTAT
Found at i:21280871 original size:35 final size:35
Alignment explanation
Indices: 21280820--21280889 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
21280810 AAAATTTAAC
*
21280820 AAACTCATTCTGATTAGTTTGCACAAACTATAAAA
1 AAACTCATTCTAATTAGTTTGCACAAACTATAAAA
*
21280855 AAACTCTTTCTAATTAGTTTGCACAAACTATAAAA
1 AAACTCATTCTAATTAGTTTGCACAAACTATAAAA
21280890 GGTTTGATCA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.43, C:0.17, G:0.07, T:0.33
Consensus pattern (35 bp):
AAACTCATTCTAATTAGTTTGCACAAACTATAAAA
Found at i:21280952 original size:34 final size:34
Alignment explanation
Indices: 21280914--21281087 Score: 203
Period size: 34 Copynumber: 5.1 Consensus size: 34
21280904 AATTCAACAA
*
21280914 ACTCTTTCTGATTAGTTTGCACAAATTATAAAAG
1 ACTCTTTCTGATTAGTTTGCACAAACTATAAAAG
* *
21280948 ACTCTTTCTAATTAGTTTGCATTCAAGA-T-TCAACAG
1 ACTCTTTCTGATTAGTTTGCA--CAA-ACTAT-AAAAG
* *
21280984 GCTCTTTCTGATTAGTTTGCACAAACTATAAAAT
1 ACTCTTTCTGATTAGTTTGCACAAACTATAAAAG
*
21281018 A-TCCTTTTTGATTAGTTTGCACAAACTATAAAAG
1 ACT-CTTTCTGATTAGTTTGCACAAACTATAAAAG
* *
21281052 ACTTTTTCTAATTAGTTTGCA-AAACTATAAAAG
1 ACTCTTTCTGATTAGTTTGCACAAACTATAAAAG
21281085 ACT
1 ACT
21281088 TGATAGCAAA
Statistics
Matches: 120, Mismatches: 12, Indels: 17
0.81 0.08 0.11
Matches are distributed among these distances:
33 17 0.14
34 72 0.60
35 3 0.03
36 27 0.22
37 1 0.01
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (34 bp):
ACTCTTTCTGATTAGTTTGCACAAACTATAAAAG
Found at i:21280989 original size:70 final size:68
Alignment explanation
Indices: 21280904--21281087 Score: 214
Period size: 70 Copynumber: 2.7 Consensus size: 68
21280894 TGATCAAGCC
* *
21280904 AATTCAACAAACTCTTTCTGATTAGTTTGCACAAATTATAAAAGACT-CTTTCTAATTAGTTTGC
1 AATTCAACAGACTCTTTCTGATTAGTTTGCACAAACTATAAAAGACTCCTTTCTAATTAGTTTGC
21280968 ATTCA
66 A--CA
* * * *
21280973 AGATTCAACAGGCTCTTTCTGATTAGTTTGCACAAACTATAAAATA-TCCTTTTTGATTAGTTTG
1 A-ATTCAACAGACTCTTTCTGATTAGTTTGCACAAACTATAAAAGACTCCTTTCTAATTAGTTTG
21281037 CACA
65 CACA
* * *
21281041 AACTAT-AAAAGACTTTTTCTAATTAGTTTGCA-AAACTATAAAAGACT
1 AA-T-TCAACAGACTCTTTCTGATTAGTTTGCACAAACTATAAAAGACT
21281088 TGATAGCAAA
Statistics
Matches: 99, Mismatches: 11, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
67 13 0.13
68 27 0.27
69 3 0.03
70 56 0.57
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (68 bp):
AATTCAACAGACTCTTTCTGATTAGTTTGCACAAACTATAAAAGACTCCTTTCTAATTAGTTTGC
ACA
Found at i:21283797 original size:2 final size:2
Alignment explanation
Indices: 21283790--21283815 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
21283780 TCCATAAATA
21283790 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
21283816 GTATTTATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:21293126 original size:2 final size:2
Alignment explanation
Indices: 21293119--21293196 Score: 102
Period size: 2 Copynumber: 38.0 Consensus size: 2
21293109 TATGGTGATG
* **
21293119 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TAC TAN GA
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T-C T-C TC
*
21293163 TG TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
21293197 ATATCAATAT
Statistics
Matches: 69, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
2 66 0.96
3 3 0.04
ACGTcount: A:0.04, C:0.45, G:0.03, T:0.47
Consensus pattern (2 bp):
TC
Found at i:21308342 original size:13 final size:13
Alignment explanation
Indices: 21308324--21308361 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
21308314 ATAAACCGTC
21308324 TTCTCTCTTATTT
1 TTCTCTCTTATTT
*
21308337 TTCTCTTTTATTT
1 TTCTCTCTTATTT
*
21308350 TTC-ATCTTATTT
1 TTCTCTCTTATTT
21308362 CCCTGCCCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
12 7 0.32
13 15 0.68
ACGTcount: A:0.11, C:0.18, G:0.00, T:0.71
Consensus pattern (13 bp):
TTCTCTCTTATTT
Found at i:21308403 original size:13 final size:14
Alignment explanation
Indices: 21308381--21308418 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
21308371 TTGTTTTACC
*
21308381 TTTTAATTATTTA-
1 TTTTATTTATTTAG
21308394 TTTTATTTATTTAG
1 TTTTATTTATTTAG
21308408 TTTTAATTTAT
1 TTTT-ATTTAT
21308419 GCTTTAATTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 12 0.55
14 4 0.18
15 6 0.27
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (14 bp):
TTTTATTTATTTAG
Found at i:21310504 original size:18 final size:18
Alignment explanation
Indices: 21310481--21310515 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
21310471 TTATATATCC
21310481 AAATG-AAGATGAAGATGA
1 AAATGAAAGA-GAAGATGA
21310499 AAATGAAAGAGAAGATG
1 AAATGAAAGAGAAGATG
21310516 CATAAGGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.57, C:0.00, G:0.29, T:0.14
Consensus pattern (18 bp):
AAATGAAAGAGAAGATGA
Found at i:21318645 original size:29 final size:28
Alignment explanation
Indices: 21318548--21318650 Score: 81
Period size: 29 Copynumber: 3.7 Consensus size: 28
21318538 AAAAAATAAA
* *
21318548 TAAAATTTTATTATTTTATTATATTTAAT
1 TAAAATATT-TTATATTATTATATTTAAT
* *
21318577 T-AAAT-TTTTATATTTTTATTTTTAA-
1 TAAAATATTTTATATTATTATATTTAAT
*
21318602 TCAAATAAGTTTT-TATTATTAATATTTAAT
1 TAAAAT-A-TTTTATATTATT-ATATTTAAT
21318632 TAAAATATTATT-TATTATT
1 TAAAATATT-TTATATTATT
21318651 TTATATCACG
Statistics
Matches: 61, Mismatches: 6, Indels: 14
0.75 0.07 0.17
Matches are distributed among these distances:
25 1 0.02
26 19 0.31
27 2 0.03
28 12 0.20
29 22 0.36
30 5 0.08
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.60
Consensus pattern (28 bp):
TAAAATATTTTATATTATTATATTTAAT
Found at i:21318915 original size:21 final size:21
Alignment explanation
Indices: 21318891--21318931 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
21318881 AATTTTATTT
*
21318891 AAAAATTTTTAAATAATATAA
1 AAAAATTTTAAAATAATATAA
*
21318912 AAAAATTTTAAAATATTATA
1 AAAAATTTTAAAATAATATA
21318932 CTAAAGCTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (21 bp):
AAAAATTTTAAAATAATATAA
Found at i:21346622 original size:11 final size:11
Alignment explanation
Indices: 21346584--21346622 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
21346574 ATATACAGAA
21346584 ATAGA-TGATC
1 ATAGACTGATC
*
21346594 ATAGACCGATC
1 ATAGACTGATC
*
21346605 ATAGACTGGTC
1 ATAGACTGATC
21346616 ATAGACT
1 ATAGACT
21346623 TCCTATGTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
10 5 0.20
11 20 0.80
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.26
Consensus pattern (11 bp):
ATAGACTGATC
Found at i:21348808 original size:21 final size:20
Alignment explanation
Indices: 21348765--21348806 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
21348755 AGACTTATAC
21348765 TTATTTAAAAAATAAAAAAT
1 TTATTTAAAAAATAAAAAAT
* * *
21348785 TTATTTTAAATATAAAACAT
1 TTATTTAAAAAATAAAAAAT
21348805 TT
1 TT
21348807 TAAGGATCAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (20 bp):
TTATTTAAAAAATAAAAAAT
Found at i:21348997 original size:8 final size:9
Alignment explanation
Indices: 21348979--21349007 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
21348969 AATATTTAAC
21348979 TAAAAATAT
1 TAAAAATAT
21348988 TAAAAA-AT
1 TAAAAATAT
21348996 TAAAAATAT
1 TAAAAATAT
21349005 TAA
1 TAA
21349008 TATTTAACTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
8 8 0.42
9 11 0.58
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (9 bp):
TAAAAATAT
Found at i:21349022 original size:22 final size:20
Alignment explanation
Indices: 21348961--21349051 Score: 81
Period size: 17 Copynumber: 4.8 Consensus size: 20
21348951 TAAAATATTA
* *
21348961 AAAAAATTAATATTTAACTA
1 AAAATATTAATATTTAACTT
*
21348981 AAAATATTAA-A---AAATT
1 AAAATATTAATATTTAACTT
21348997 AAAAATATTAATATTTAACTTT
1 -AAAATATTAATATTTAAC-TT
21349019 AAAATA-T--T-TTTAACTT
1 AAAATATTAATATTTAACTT
21349035 AAAATATTAATATTTAA
1 AAAATATTAATATTTAA
21349052 ATTATTCAAT
Statistics
Matches: 57, Mismatches: 4, Indels: 20
0.70 0.05 0.25
Matches are distributed among these distances:
16 11 0.19
17 17 0.30
18 2 0.04
19 2 0.04
20 15 0.26
21 8 0.14
22 2 0.04
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (20 bp):
AAAATATTAATATTTAACTT
Found at i:21349038 original size:16 final size:17
Alignment explanation
Indices: 21349010--21349042 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
21349000 AATATTAATA
21349010 TTTAACTTTAAAATATT
1 TTTAACTTTAAAATATT
21349027 TTTAAC-TTAAAATATT
1 TTTAACTTTAAAATATT
21349043 AATATTTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (17 bp):
TTTAACTTTAAAATATT
Found at i:21349039 original size:37 final size:37
Alignment explanation
Indices: 21348950--21349051 Score: 125
Period size: 37 Copynumber: 2.8 Consensus size: 37
21348940 CTATTTTAAT
* *
21348950 TTAAAATATTAAAAAAATTAATATTTAACTAAAAATA
1 TTAAAAAATTAAAAATATTAATATTTAACTAAAAATA
*
21348987 TTAAAAAATTAAAAATATTAATATTTAACTTTAAAATA
1 TTAAAAAATTAAAAATATTAATATTTAAC-TAAAAATA
*** *
21349025 TTTTTAACTT-AAAATATTAATATTTAA
1 TTAAAAAATTAAAAATATTAATATTTAA
21349052 ATTATTCAAT
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
37 44 0.77
38 13 0.23
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (37 bp):
TTAAAAAATTAAAAATATTAATATTTAACTAAAAATA
Found at i:21349525 original size:10 final size:10
Alignment explanation
Indices: 21349510--21349541 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
21349500 TTCAAACAAC
21349510 AAAAACATTA
1 AAAAACATTA
*
21349520 AAAAACAATA
1 AAAAACATTA
21349530 AAAAACATTA
1 AAAAACATTA
21349540 AA
1 AA
21349542 TTTTTCTGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.75, C:0.09, G:0.00, T:0.16
Consensus pattern (10 bp):
AAAAACATTA
Found at i:21365997 original size:19 final size:19
Alignment explanation
Indices: 21365973--21366017 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
21365963 CCAACCCTAT
**
21365973 CTTTCTCTCTTTTTCCTTC
1 CTTTCTCTCTTCCTCCTTC
*
21365992 CTTTCTTTCTTCCTCCTTC
1 CTTTCTCTCTTCCTCCTTC
21366011 CTCTTCT
1 CT-TTCT
21366018 TCTCCCCTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 18 0.82
20 4 0.18
ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60
Consensus pattern (19 bp):
CTTTCTCTCTTCCTCCTTC
Found at i:21366017 original size:16 final size:17
Alignment explanation
Indices: 21365979--21366019 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
21365969 CTATCTTTCT
* *
21365979 CTCTTTTTCCTTCCTTT
1 CTCTTCTTCCTTCCTTC
21365996 CT-TTCTTCC-TCCTTC
1 CTCTTCTTCCTTCCTTC
21366011 CTCTTCTTC
1 CTCTTCTTC
21366020 TCCCCTTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
15 7 0.33
16 12 0.57
17 2 0.10
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (17 bp):
CTCTTCTTCCTTCCTTC
Found at i:21367290 original size:18 final size:18
Alignment explanation
Indices: 21367267--21367303 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
21367257 TTCTATGATG
21367267 GCCCACTTGAGATTGAAA
1 GCCCACTTGAGATTGAAA
21367285 GCCCACTTGAGATTGAAA
1 GCCCACTTGAGATTGAAA
21367303 G
1 G
21367304 TGGGGAACTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.22
Consensus pattern (18 bp):
GCCCACTTGAGATTGAAA
Found at i:21369362 original size:14 final size:13
Alignment explanation
Indices: 21369342--21369379 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
21369332 GATTCCTTCT
21369342 TCTTTTGTCTTTA
1 TCTTTTGTCTTTA
*
21369355 TGCTTTTGTTTTTA
1 T-CTTTTGTCTTTA
21369369 TCTTTTG-CTTT
1 TCTTTTGTCTTT
21369380 TACTTATAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 3 0.14
13 7 0.32
14 12 0.55
ACGTcount: A:0.05, C:0.13, G:0.11, T:0.71
Consensus pattern (13 bp):
TCTTTTGTCTTTA
Found at i:21369380 original size:14 final size:13
Alignment explanation
Indices: 21369342--21369381 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
21369332 GATTCCTTCT
*
21369342 TCTTTTGTCTTTA
1 TCTTTTGTTTTTA
21369355 TGCTTTTGTTTTTA
1 T-CTTTTGTTTTTA
*
21369369 TCTTTTGCTTTTA
1 TCTTTTGTTTTTA
21369382 CTTATAGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 12 0.50
14 12 0.50
ACGTcount: A:0.07, C:0.12, G:0.10, T:0.70
Consensus pattern (13 bp):
TCTTTTGTTTTTA
Found at i:21387470 original size:2 final size:2
Alignment explanation
Indices: 21387463--21387492 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
21387453 TATTTTGCAA
21387463 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
21387493 ATATATATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:21387497 original size:2 final size:2
Alignment explanation
Indices: 21387492--21387518 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
21387482 TCTCTCTCTC
21387492 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
21387519 TTTGTCAACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:21407174 original size:30 final size:31
Alignment explanation
Indices: 21407140--21407202 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 31
21407130 TATTTAACTC
* *
21407140 AAAATAAAAATACAATGATTTATTTGAA-GT
1 AAAATAAAAATACAAAGATTTAATTGAACGT
*
21407170 AAAATAAAAATATAAAGATTTAATTGAACGT
1 AAAATAAAAATACAAAGATTTAATTGAACGT
21407201 AA
1 AA
21407203 TAAAAGTATA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 25 0.86
31 4 0.14
ACGTcount: A:0.57, C:0.03, G:0.10, T:0.30
Consensus pattern (31 bp):
AAAATAAAAATACAAAGATTTAATTGAACGT
Found at i:21407205 original size:29 final size:29
Alignment explanation
Indices: 21407141--21407213 Score: 85
Period size: 30 Copynumber: 2.5 Consensus size: 29
21407131 ATTTAACTCA
* * *
21407141 AAATAAAAATACAATGATTTATTTGAAGT
1 AAATAAAAATATAAAGATTTAATTGAAGT
21407170 AAAATAAAAATATAAAGATTTAATTGAACGT
1 -AAATAAAAATATAAAGATTTAATTGAA-GT
*
21407201 -AATAAAAGTATAA
1 AAATAAAAATATAA
21407214 GAGTTTATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
29 12 0.32
30 24 0.63
31 2 0.05
ACGTcount: A:0.58, C:0.03, G:0.10, T:0.30
Consensus pattern (29 bp):
AAATAAAAATATAAAGATTTAATTGAAGT
Found at i:21409583 original size:2 final size:2
Alignment explanation
Indices: 21409576--21409623 Score: 75
Period size: 2 Copynumber: 25.5 Consensus size: 2
21409566 CTAAAAATTA
21409576 AT AT AT AT AT AT AT AT AT AT A- AT AT AT AT A- AT -T AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
21409615 AT AT AT AT A
1 AT AT AT AT A
21409624 ATGTTATAGT
Statistics
Matches: 43, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
1 3 0.07
2 40 0.93
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:21412442 original size:24 final size:24
Alignment explanation
Indices: 21412415--21412546 Score: 128
Period size: 24 Copynumber: 5.6 Consensus size: 24
21412405 ACACGTTATG
* *
21412415 ATGTTACACGTCATGTACAAAAAT
1 ATGTTACACGCCATGTACAAAAAC
*
21412439 ATGTTACATGCCATGTACAAAAAC
1 ATGTTACACGCCATGTACAAAAAC
*
21412463 ATGTTACACGCCATATACAAAAAC
1 ATGTTACACGCCATGTACAAAAAC
* * **
21412487 ATGTGACACGCCATAGT----TAGG
1 ATGTTACACGCCAT-GTACAAAAAC
* *
21412508 TTGTTACACGCCATGTATAAAAAC
1 ATGTTACACGCCATGTACAAAAAC
*
21412532 ATGTTACACGTCATG
1 ATGTTACACGCCATG
21412547 GTTAGGTTGT
Statistics
Matches: 86, Mismatches: 17, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
20 2 0.02
21 13 0.15
24 70 0.81
25 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (24 bp):
ATGTTACACGCCATGTACAAAAAC
Found at i:21412521 original size:45 final size:45
Alignment explanation
Indices: 21412464--21412702 Score: 343
Period size: 45 Copynumber: 5.3 Consensus size: 45
21412454 TACAAAAACA
* *
21412464 TGTTACACGCCATATACAAAAACATGTGACACGCCATAGTTAGGT
1 TGTTACACGCCATATACAAAAACATGTGACACGTCATGGTTAGGT
* * *
21412509 TGTTACACGCCATGTATAAAAACATGTTACACGTCATGGTTAGGT
1 TGTTACACGCCATATACAAAAACATGTGACACGTCATGGTTAGGT
* * *
21412554 TGTTACATGTCATGTACAAAAACATGTGACACGTCATGGTTAGGT
1 TGTTACACGCCATATACAAAAACATGTGACACGTCATGGTTAGGT
* *
21412599 TGTTACACGCCATATACAAAAACATTTGACACGCCATGGTTAGGT
1 TGTTACACGCCATATACAAAAACATGTGACACGTCATGGTTAGGT
* * * *
21412644 TGTTACATGCCATGTACAAAAATATGTGACACGTCATGATTAGGT
1 TGTTACACGCCATATACAAAAACATGTGACACGTCATGGTTAGGT
*
21412689 TGTTACACGTCATA
1 TGTTACACGCCATA
21412703 GTTATGTTGT
Statistics
Matches: 171, Mismatches: 23, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 171 1.00
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (45 bp):
TGTTACACGCCATATACAAAAACATGTGACACGTCATGGTTAGGT
Found at i:21412696 original size:21 final size:21
Alignment explanation
Indices: 21412672--21412716 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
21412662 AAAATATGTG
21412672 ACACGTCAT-GATTAGGTTGTT
1 ACACGTCATAG-TTAGGTTGTT
*
21412693 ACACGTCATAGTTATGTTGTT
1 ACACGTCATAGTTAGGTTGTT
21412714 ACA
1 ACA
21412717 TGCCATGTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 21 0.95
22 1 0.05
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.38
Consensus pattern (21 bp):
ACACGTCATAGTTAGGTTGTT
Found at i:21412697 original size:111 final size:110
Alignment explanation
Indices: 21412582--21412812 Score: 354
Period size: 111 Copynumber: 2.1 Consensus size: 110
21412572 AAAACATGTG
* * *
21412582 ACACGTCATGGTTAGGTTGTTACACGCCATATACAAAAACATTTGACACGCCATGGTTAGGTTGT
1 ACACGTCATAGTTAGGTTGTTACACGCCATATACAAAAACATGTGACACGCCATGATTAGGTTGT
* *
21412647 TACATGCCATGTACAAAAATATGTGACACGTCATGATTAGGTTGTT
66 TACACGCCATGTAC-AAAACATGTGACACGTCATGATTAGGTTGTT
* * *
21412693 ACACGTCATAGTTATGTTGTTACATGCCATGTACAAAAACATGTGACACGCCATGATTAGGTTGT
1 ACACGTCATAGTTAGGTTGTTACACGCCATATACAAAAACATGTGACACGCCATGATTAGGTTGT
*
21412758 TACACGCCATGTACAAAACATGTGACATGTCATGATTAGGTTGTT
66 TACACGCCATGTACAAAACATGTGACACGTCATGATTAGGTTGTT
* *
21412803 GCACGCCATA
1 ACACGTCATA
21412813 TTGAAAAAAA
Statistics
Matches: 109, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
110 37 0.34
111 72 0.66
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (110 bp):
ACACGTCATAGTTAGGTTGTTACACGCCATATACAAAAACATGTGACACGCCATGATTAGGTTGT
TACACGCCATGTACAAAACATGTGACACGTCATGATTAGGTTGTT
Found at i:21412719 original size:66 final size:66
Alignment explanation
Indices: 21412627--21412767 Score: 237
Period size: 66 Copynumber: 2.1 Consensus size: 66
21412617 AAAACATTTG
* * *
21412627 ACACGCCATGGTTAGGTTGTTACATGCCATGTACAAAAATATGTGACACGTCATGATTAGGTTGT
1 ACACGCCATAGTTAGGTTGTTACATGCCATGTACAAAAACATGTGACACGCCATGATTAGGTTGT
21412692 T
66 T
* *
21412693 ACACGTCATAGTTATGTTGTTACATGCCATGTACAAAAACATGTGACACGCCATGATTAGGTTGT
1 ACACGCCATAGTTAGGTTGTTACATGCCATGTACAAAAACATGTGACACGCCATGATTAGGTTGT
21412758 T
66 T
21412759 ACACGCCAT
1 ACACGCCAT
21412768 GTACAAAACA
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
66 69 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (66 bp):
ACACGCCATAGTTAGGTTGTTACATGCCATGTACAAAAACATGTGACACGCCATGATTAGGTTGT
T
Found at i:21412742 original size:135 final size:135
Alignment explanation
Indices: 21412416--21412746 Score: 366
Period size: 135 Copynumber: 2.4 Consensus size: 135
21412406 CACGTTATGA
*
21412416 TGTTACACGTCATGTACAAAAATATGTTACATGCCATGTACAAAAACATGTTACACGCCATATAC
1 TGTTACACGTCATGT---AAAACATGTTACATGCCATGTACAAAAACATGTTACACGCCATATAC
* *
21412481 AAAAACATGTGACACGCCATAGTTAGGTTGTTACACGCCATGTATAAAAACATGTTACACGTCAT
63 AAAAACATGTGACACGCCATAGTTAGGTTGTTACACGCCATGTACAAAAACATGTGACACGTCAT
*
21412546 GGTTAGGT
128 GATTAGGT
* * * * * ***
21412554 TGTTACATGTCATGTACAAAAACATGTGACACGTCATGGT----TAGGTTGTTACACGCCATATA
1 TGTTACACGTCATGT---AAAACATGTTACATGCCAT-GTACAAAAACATGTTACACGCCATATA
* * * *
21412615 CAAAAACATTTGACACGCCATGGTTAGGTTGTTACATGCCATGTACAAAAATATGTGACACGTCA
62 CAAAAACATGTGACACGCCATAGTTAGGTTGTTACACGCCATGTACAAAAACATGTGACACGTCA
21412680 TGATTAGGT
127 TGATTAGGT
* *** *
21412689 TGTTACACGTCATAGT-TATGTTGTTACATGCCATGTACAAAAACATGTGACACGCCAT
1 TGTTACACGTCAT-GTAAAACATGTTACATGCCATGTACAAAAACATGTTACACGCCAT
21412747 GATTAGGTTG
Statistics
Matches: 158, Mismatches: 29, Indels: 15
0.78 0.14 0.07
Matches are distributed among these distances:
131 2 0.01
132 11 0.07
135 109 0.69
136 2 0.01
138 32 0.20
139 2 0.01
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (135 bp):
TGTTACACGTCATGTAAAACATGTTACATGCCATGTACAAAAACATGTTACACGCCATATACAAA
AACATGTGACACGCCATAGTTAGGTTGTTACACGCCATGTACAAAAACATGTGACACGTCATGAT
TAGGT
Found at i:21412792 original size:44 final size:45
Alignment explanation
Indices: 21412708--21412811 Score: 165
Period size: 44 Copynumber: 2.3 Consensus size: 45
21412698 TCATAGTTAT
*
21412708 GTTGTTACATGCCATGTACAAAAACATGTGACACGCCATGATTAG
1 GTTGTTACACGCCATGTACAAAAACATGTGACACGCCATGATTAG
* *
21412753 GTTGTTACACGCCATGTAC-AAAACATGTGACATGTCATGATTAG
1 GTTGTTACACGCCATGTACAAAAACATGTGACACGCCATGATTAG
*
21412797 GTTGTTGCACGCCAT
1 GTTGTTACACGCCAT
21412812 ATTGAAAAAA
Statistics
Matches: 55, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
44 37 0.67
45 18 0.33
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (45 bp):
GTTGTTACACGCCATGTACAAAAACATGTGACACGCCATGATTAG
Found at i:21412848 original size:31 final size:29
Alignment explanation
Indices: 21412798--21412893 Score: 88
Period size: 29 Copynumber: 3.3 Consensus size: 29
21412788 CATGATTAGG
* *
21412798 TTGTTGCACGCCATATTGAAAAAAAATATTA
1 TTGTTACACACCATATTG--AAAAAATATTA
* * *
21412829 TTGTTACACACCATGTTGAAACAATATTG
1 TTGTTACACACCATATTGAAAAAATATTA
* * *
21412858 TTGTTACACGCCAAATT-CAAAAATATT-
1 TTGTTACACACCATATTGAAAAAATATTA
21412885 TTGTTACAC
1 TTGTTACAC
21412894 TTTAACACTT
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
27 9 0.16
28 8 0.15
29 23 0.42
31 15 0.27
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.34
Consensus pattern (29 bp):
TTGTTACACACCATATTGAAAAAATATTA
Found at i:21412888 original size:27 final size:28
Alignment explanation
Indices: 21412819--21412893 Score: 89
Period size: 29 Copynumber: 2.7 Consensus size: 28
21412809 CATATTGAAA
** *
21412819 AAAAATATTATTGTTACACACCATGTTG
1 AAAAATATTATTGTTACACACCAAATTC
* *
21412847 AAACAATATTGTTGTTACACGCCAAATTC
1 AAA-AATATTATTGTTACACACCAAATTC
21412876 AAAAATATT-TTGTTACAC
1 AAAAATATTATTGTTACAC
21412894 TTTAACACTT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
27 9 0.22
28 9 0.22
29 23 0.56
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.35
Consensus pattern (28 bp):
AAAAATATTATTGTTACACACCAAATTC
Found at i:21422464 original size:19 final size:19
Alignment explanation
Indices: 21422440--21422477 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
21422430 ACTTCTTAAC
21422440 CTCAAATCATACTCCAATA
1 CTCAAATCATACTCCAATA
*
21422459 CTCAAATCATACTCTAATA
1 CTCAAATCATACTCCAATA
21422478 AGTCAAATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.29, G:0.00, T:0.29
Consensus pattern (19 bp):
CTCAAATCATACTCCAATA
Found at i:21430718 original size:122 final size:125
Alignment explanation
Indices: 21430473--21430722 Score: 375
Period size: 122 Copynumber: 2.0 Consensus size: 125
21430463 ACATGTTGCA
*
21430473 CACTCAAATAACGTGTGGCAATTTCCAAACCTAGAAAGGCCAAAGACCAGCTTCTTTTTTTATTA
1 CACTCAAAAAACGTGTGGCAATTTCCAAACCTAGAAAGGCCAAAGACCAGCTTC-TTTTTTATTA
* * *
21430538 TTATTTTCATAACTTTTCACATGGCAGTGTAAGAGGACAACAATGTGGCTAAATATGGAGC
65 CTATTTTCATAACTTTCCACATGGCAGTGTAAGAGGACAACAACGTGGCTAAATATGGAGC
* * *
21430599 CACTCAAAAAACGTGTTGCAA-TTCCTAAACCTGGAAAGGCCAAAGGCCAGCTTC-TTTTT-TT-
1 CACTCAAAAAACGTGTGGCAATTTCC-AAACCTAGAAAGGCCAAAGACCAGCTTCTTTTTTATTA
21430660 CTATTTTCATAACTTTCCACATGGCAGCT-TAAGAGGACAACAACGTGGCTAAATATGGAGC
65 CTATTTTCATAACTTTCCACATGGCAG-TGTAAGAGGACAACAACGTGGCTAAATATGGAGC
21430721 CA
1 CA
21430723 GTTTTGGATC
Statistics
Matches: 115, Mismatches: 7, Indels: 8
0.88 0.05 0.06
Matches are distributed among these distances:
122 58 0.50
123 3 0.03
124 5 0.04
125 4 0.03
126 45 0.39
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (125 bp):
CACTCAAAAAACGTGTGGCAATTTCCAAACCTAGAAAGGCCAAAGACCAGCTTCTTTTTTATTAC
TATTTTCATAACTTTCCACATGGCAGTGTAAGAGGACAACAACGTGGCTAAATATGGAGC
Found at i:21437361 original size:18 final size:17
Alignment explanation
Indices: 21437308--21437365 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 17
21437298 AGACGTTTAA
*
21437308 TTAATCGTGTTATTGTGT
1 TTAATCGTATTA-TGTGT
* * *
21437326 TTAAACATATAAATGTGT
1 TTAATCGTAT-TATGTGT
21437344 TTAATCGTATTATCGTGT
1 TTAATCGTATTAT-GTGT
21437362 TTAA
1 TTAA
21437366 ATATGTATAC
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
17 2 0.06
18 28 0.90
19 1 0.03
ACGTcount: A:0.29, C:0.07, G:0.16, T:0.48
Consensus pattern (17 bp):
TTAATCGTATTATGTGT
Found at i:21439194 original size:26 final size:26
Alignment explanation
Indices: 21439138--21439194 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
21439128 TTATTTAAAT
* * * *
21439138 TAAATTTTATTATTTGTGTATTTTTA
1 TAAATTTAATTATTTATGTAATTCTA
21439164 TAAATTTAATTATTTATG-AATTCTA
1 TAAATTTAATTATTTATGTAATTCTA
21439189 TGAAAT
1 T-AAAT
21439195 ATAAATAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
25 6 0.23
26 20 0.77
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.56
Consensus pattern (26 bp):
TAAATTTAATTATTTATGTAATTCTA
Found at i:21444403 original size:36 final size:36
Alignment explanation
Indices: 21444316--21444403 Score: 94
Period size: 38 Copynumber: 2.4 Consensus size: 36
21444306 TATTTGCTTA
21444316 TTAAAATTTATTAATTGTTTTAATATAATTTTAAAAT
1 TTAAAATTTATTAATTGTTTTAATATAATTTT-AAAT
*
21444353 TT--AATTTAATTTAATTTTTTATGAAT-TAATTTT-AAT
1 TTAAAATTT-A-TTAATTGTTT-T-AATATAATTTTAAAT
21444389 TTAAAATTTATTAAT
1 TTAAAATTTATTAAT
21444404 AATATACATA
Statistics
Matches: 44, Mismatches: 1, Indels: 13
0.76 0.02 0.22
Matches are distributed among these distances:
35 5 0.11
36 11 0.25
37 12 0.27
38 13 0.30
39 3 0.07
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (36 bp):
TTAAAATTTATTAATTGTTTTAATATAATTTTAAAT
Found at i:21461806 original size:25 final size:25
Alignment explanation
Indices: 21461772--21461821 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
21461762 TGGTTTGGTC
21461772 GTCATATTTAAAGGTTATATATATA
1 GTCATATTTAAAGGTTATATATATA
21461797 GTCATATTTAAAGGTTATATATATA
1 GTCATATTTAAAGGTTATATATATA
21461822 TGACCAGGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.04, G:0.12, T:0.44
Consensus pattern (25 bp):
GTCATATTTAAAGGTTATATATATA
Found at i:21466556 original size:2 final size:2
Alignment explanation
Indices: 21466549--21466585 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
21466539 TTTTGCAAAN
*
21466549 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
21466586 TTCTTTTTGG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (2 bp):
TA
Found at i:21468120 original size:8 final size:8
Alignment explanation
Indices: 21468089--21468154 Score: 55
Period size: 8 Copynumber: 8.1 Consensus size: 8
21468079 AGAAGAAAAA
*
21468089 AATAAATT
1 AATAATTT
21468097 AATAATTTT
1 AATAA-TTT
21468106 AATTAATTT
1 AA-TAATTT
21468115 AATAATTT
1 AATAATTT
*
21468123 TATATATTT
1 AATA-ATTT
* *
21468132 AATTATAT
1 AATAATTT
21468140 AA-AA-TT
1 AATAATTT
21468146 AATAATTT
1 AATAATTT
21468154 A
1 A
21468155 GTTAATAATG
Statistics
Matches: 46, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
6 3 0.07
7 3 0.07
8 22 0.48
9 15 0.33
10 3 0.07
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (8 bp):
AATAATTT
Found at i:21468151 original size:17 final size:16
Alignment explanation
Indices: 21468090--21468153 Score: 60
Period size: 18 Copynumber: 3.9 Consensus size: 16
21468080 GAAGAAAAAA
21468090 ATAAATTAATAATTTT
1 ATAAATTAATAATTTT
*
21468106 AATTAATTTAATAATTTT
1 -A-TAAATTAATAATTTT
* *
21468124 ATATATT--TAATTAT
1 ATAAATTAATAATTTT
21468138 ATAAAATTAATAATTT
1 AT-AAATTAATAATTT
21468154 AGTTAATAAT
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
14 8 0.22
15 4 0.11
16 4 0.11
17 7 0.19
18 14 0.38
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
ATAAATTAATAATTTT
Found at i:21468153 original size:22 final size:22
Alignment explanation
Indices: 21468092--21468162 Score: 63
Period size: 26 Copynumber: 3.0 Consensus size: 22
21468082 AGAAAAAAAT
*
21468092 AAATTAATAATTTTAATTAATTTA
1 AAATTAATAA-TTTAATT-ATATA
*
21468116 ATAATTTTATATATTTAATTATATA
1 A-AA-TTAATA-ATTTAATTATATA
*
21468141 AAATTAATAATTTAGTTA-ATA
1 AAATTAATAATTTAATTATATA
21468162 A
1 A
21468163 TGGTATTACT
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
21 4 0.10
22 8 0.20
23 5 0.12
24 3 0.08
25 7 0.17
26 12 0.30
27 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (22 bp):
AAATTAATAATTTAATTATATA
Found at i:21469052 original size:2 final size:2
Alignment explanation
Indices: 21469045--21469073 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
21469035 TGTTTTTCTT
21469045 TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
21469074 AACTTGTTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:21472219 original size:2 final size:2
Alignment explanation
Indices: 21472212--21472240 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
21472202 TAATTCTTTC
21472212 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
21472241 GAAATAATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:21474236 original size:2 final size:2
Alignment explanation
Indices: 21474229--21474263 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
21474219 TAAGTGGATA
21474229 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
21474264 ATTACCTTCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:21487223 original size:29 final size:29
Alignment explanation
Indices: 21487176--21487245 Score: 88
Period size: 30 Copynumber: 2.4 Consensus size: 29
21487166 TTTAATAATA
21487176 AATTATAAAAATTCATA-TTTAAAATTTT
1 AATTATAAAAATTCATATTTTAAAATTTT
* *
21487204 AATTATAAATTATTCATATTTTAATATTTT
1 AATTATAAA-AATTCATATTTTAAAATTTT
**
21487234 AAAAATAAAAAT
1 AATTATAAAAAT
21487246 AAAGATTAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
28 9 0.26
29 9 0.26
30 17 0.49
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (29 bp):
AATTATAAAAATTCATATTTTAAAATTTT
Found at i:21488291 original size:38 final size:38
Alignment explanation
Indices: 21488201--21488301 Score: 132
Period size: 38 Copynumber: 2.6 Consensus size: 38
21488191 GTGACTTCCA
* *
21488201 AGCTCAAATTTTGAAATTATTTTTTTTCCTTTCTTTCTT
1 AGCTCAAATTTTGGAATTA-TTTTTTCCCTTTCTTTCTT
* *
21488240 AACTTAAATTTTGGAATTATTTTTTCCCTTT-TTTCCTT
1 AGCTCAAATTTTGGAATTATTTTTTCCCTTTCTTT-CTT
*
21488278 AGCTCAAAATTTGGAATTATTTTT
1 AGCTCAAATTTTGGAATTATTTTT
21488302 CTTTTTTTTT
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
37 3 0.06
38 35 0.65
39 16 0.30
ACGTcount: A:0.24, C:0.14, G:0.07, T:0.55
Consensus pattern (38 bp):
AGCTCAAATTTTGGAATTATTTTTTCCCTTTCTTTCTT
Found at i:21491059 original size:12 final size:11
Alignment explanation
Indices: 21491035--21491072 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 11
21491025 ACAACACCAG
21491035 AAAAAATA-AA
1 AAAAAATACAA
21491045 AAAAAATACATA
1 AAAAAATACA-A
21491057 AAAAAATACCAA
1 AAAAAATA-CAA
21491069 AAAA
1 AAAA
21491073 TCAGAAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 8 0.32
11 1 0.04
12 14 0.56
13 2 0.08
ACGTcount: A:0.82, C:0.08, G:0.00, T:0.11
Consensus pattern (11 bp):
AAAAAATACAA
Found at i:21491997 original size:12 final size:13
Alignment explanation
Indices: 21491975--21492024 Score: 52
Period size: 12 Copynumber: 4.1 Consensus size: 13
21491965 TATTTGCTAC
21491975 AAATAAATAAAAA
1 AAATAAATAAAAA
21491988 AAAT-AAT-AAAA
1 AAATAAATAAAAA
*
21491999 AAATAAA-ATAAA
1 AAATAAATAAAAA
* *
21492011 TACTAAATAAAAA
1 AAATAAATAAAAA
21492024 A
1 A
21492025 TGAAAAAATA
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
11 8 0.28
12 13 0.45
13 8 0.28
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.18
Consensus pattern (13 bp):
AAATAAATAAAAA
Found at i:21491997 original size:16 final size:16
Alignment explanation
Indices: 21491976--21492009 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
21491966 ATTTGCTACA
21491976 AATAAATAAAA-AAAAT
1 AATAAA-AAAATAAAAT
21491992 AATAAAAAAATAAAAT
1 AATAAAAAAATAAAAT
21492008 AA
1 AA
21492010 ATACTAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (16 bp):
AATAAAAAAATAAAAT
Found at i:21492004 original size:20 final size:21
Alignment explanation
Indices: 21491975--21492022 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
21491965 TATTTGCTAC
21491975 AAAT-AAATAAAAAAAATAAT
1 AAATAAAATAAAAAAAATAAT
* *
21491995 AAA-AAAATAAAATAAATACT
1 AAATAAAATAAAAAAAATAAT
21492015 AAATAAAA
1 AAATAAAA
21492023 AATGAAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 20 0.83
21 4 0.17
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (21 bp):
AAATAAAATAAAAAAAATAAT
Found at i:21492239 original size:7 final size:7
Alignment explanation
Indices: 21492227--21492312 Score: 57
Period size: 7 Copynumber: 11.3 Consensus size: 7
21492217 AAATCATTCA
21492227 AAAAAAT
1 AAAAAAT
21492234 AAAAAAT
1 AAAAAAT
21492241 AAAAAAAAT
1 --AAAAAAT
*
21492250 AACAAAT
1 AAAAAAT
* *
21492257 AATAGAT
1 AAAAAAT
21492264 AAAAAAAT
1 -AAAAAAT
*
21492272 GAAAGAAAGA
1 -AAA-AAA-T
21492282 AAAAAAT
1 AAAAAAT
21492289 ATAAAAAT
1 A-AAAAAT
21492297 -AAAAAT
1 AAAAAAT
21492303 AAAATAAT
1 AAAA-AAT
21492311 AA
1 AA
21492313 TAATAATGAT
Statistics
Matches: 63, Mismatches: 8, Indels: 15
0.73 0.09 0.17
Matches are distributed among these distances:
6 6 0.10
7 22 0.35
8 22 0.35
9 13 0.21
ACGTcount: A:0.79, C:0.01, G:0.05, T:0.15
Consensus pattern (7 bp):
AAAAAAT
Found at i:21492248 original size:19 final size:19
Alignment explanation
Indices: 21492226--21492312 Score: 61
Period size: 19 Copynumber: 4.5 Consensus size: 19
21492216 AAAATCATTC
21492226 AAAAAAATAAAAAATAAAA
1 AAAAAAATAAAAAATAAAA
* * * * *
21492245 AAAATAACAAATAATAGAT
1 AAAAAAATAAAAAATAAAA
* * *
21492264 AAAAAAAT--GAAAGAAAG
1 AAAAAAATAAAAAATAAAA
21492281 AAAAAAATATAAAAATAAAA
1 AAAAAAATA-AAAAATAAAA
21492301 ATAAAATAATAA
1 A-AAAA-AATAA
21492313 TAATAATGAT
Statistics
Matches: 48, Mismatches: 15, Indels: 8
0.68 0.21 0.11
Matches are distributed among these distances:
17 12 0.25
19 20 0.42
20 7 0.15
21 5 0.10
22 4 0.08
ACGTcount: A:0.79, C:0.01, G:0.05, T:0.15
Consensus pattern (19 bp):
AAAAAAATAAAAAATAAAA
Found at i:21492285 original size:39 final size:38
Alignment explanation
Indices: 21492226--21492312 Score: 97
Period size: 39 Copynumber: 2.3 Consensus size: 38
21492216 AAAATCATTC
* *
21492226 AAAAAAATAAAAAATAAAAAAAATA-ACAAATAATAGAT
1 AAAAAAATAAAAAATAAAAAAAATATAAAAATAA-AAAT
*
21492264 AAAAAAATGAAAGAAA-GAAAAAAATATAAAAATAAAAAT
1 AAAAAAAT-AAA-AAATAAAAAAAATATAAAAATAAAAAT
*
21492303 AAAATAATAA
1 AAAAAAATAA
21492313 TAATAATGAT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
38 10 0.24
39 22 0.52
40 10 0.24
ACGTcount: A:0.79, C:0.01, G:0.05, T:0.15
Consensus pattern (38 bp):
AAAAAAATAAAAAATAAAAAAAATATAAAAATAAAAAT
Found at i:21492666 original size:16 final size:17
Alignment explanation
Indices: 21492625--21492666 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
21492615 TTGCATTTAG
21492625 CATAGCATATATTGCAT
1 CATAGCATATATTGCAT
21492642 CAT-GCATATCATTGCAT
1 CATAGCATAT-ATTGCAT
21492659 -ATAG-ATAT
1 CATAGCATAT
21492667 TTTTGTTTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
16 12 0.52
17 11 0.48
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.36
Consensus pattern (17 bp):
CATAGCATATATTGCAT
Found at i:21494274 original size:11 final size:11
Alignment explanation
Indices: 21494260--21494295 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
21494250 TCATATTTAA
21494260 AAATTAAAAAT
1 AAATTAAAAAT
21494271 AAATTAAAAAT
1 AAATTAAAAAT
*
21494282 AAA-TAAACAT
1 AAATTAAAAAT
21494292 AAAT
1 AAAT
21494296 ATCNNNNNNN
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 9 0.39
11 14 0.61
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.25
Consensus pattern (11 bp):
AAATTAAAAAT
Found at i:21494495 original size:32 final size:35
Alignment explanation
Indices: 21494444--21494514 Score: 121
Period size: 32 Copynumber: 2.1 Consensus size: 35
21494434 NNNNNNNNNN
21494444 AATTATTAATATTTTAAAATAAAATAAAAT-AAAT
1 AATTATTAATATTTTAAAATAAAATAAAATAAAAT
21494478 AATTATT-A-ATTTTAAAATAAAATAAAATAAAAT
1 AATTATTAATATTTTAAAATAAAATAAAATAAAAT
21494511 AATT
1 AATT
21494515 GATCATAATA
Statistics
Matches: 36, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
32 20 0.56
33 9 0.25
34 7 0.19
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (35 bp):
AATTATTAATATTTTAAAATAAAATAAAATAAAAT
Found at i:21494551 original size:25 final size:26
Alignment explanation
Indices: 21494523--21494579 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
21494513 TTGATCATAA
*
21494523 TAATATTTTAAAT-TAAATTAAATAT
1 TAATATTTTAAATATAAATAAAATAT
21494548 TAATA-TTTAAATAATAAATAAAATAT
1 TAATATTTTAAAT-ATAAATAAAATAT
21494574 T-ATATT
1 TAATATT
21494580 AAATTATCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
24 7 0.25
25 8 0.29
26 13 0.46
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (26 bp):
TAATATTTTAAATATAAATAAAATAT
Found at i:21494697 original size:15 final size:15
Alignment explanation
Indices: 21494679--21494730 Score: 56
Period size: 15 Copynumber: 3.7 Consensus size: 15
21494669 AATTAAATAA
21494679 AATATTTAAATTATT
1 AATATTTAAATTATT
*
21494694 AATATTTTAATTA--
1 AATATTTAAATTATT
* *
21494707 AAT-TCTAGATTATT
1 AATATTTAAATTATT
21494721 AATATTTAAA
1 AATATTTAAA
21494731 AAATATAATA
Statistics
Matches: 28, Mismatches: 6, Indels: 6
0.70 0.15 0.15
Matches are distributed among these distances:
12 6 0.21
13 3 0.11
14 3 0.11
15 16 0.57
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (15 bp):
AATATTTAAATTATT
Found at i:21501295 original size:16 final size:16
Alignment explanation
Indices: 21501276--21501338 Score: 72
Period size: 16 Copynumber: 3.9 Consensus size: 16
21501266 TCAATTAATA
21501276 TTTGGGTCATTTTGGG
1 TTTGGGTCATTTTGGG
*
21501292 TTTGGGCCATTTTGGG
1 TTTGGGTCATTTTGGG
* * *
21501308 TTTAAGGTCATTTTAGA
1 TTT-GGGTCATTTTGGG
*
21501325 TTTGGATCATTTTG
1 TTTGGGTCATTTTG
21501339 AATTTCAAGC
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
16 26 0.68
17 12 0.32
ACGTcount: A:0.14, C:0.08, G:0.29, T:0.49
Consensus pattern (16 bp):
TTTGGGTCATTTTGGG
Found at i:21501826 original size:2 final size:2
Alignment explanation
Indices: 21501819--21501880 Score: 90
Period size: 2 Copynumber: 30.0 Consensus size: 2
21501809 TCTCTGCCCC
21501819 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AGT NACT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T -A-T AT AT AT
21501861 AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT
21501881 TTAGGTTAGA
Statistics
Matches: 56, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
1 1 0.02
2 51 0.91
3 2 0.04
4 2 0.04
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:21508084 original size:58 final size:58
Alignment explanation
Indices: 21507993--21508109 Score: 225
Period size: 58 Copynumber: 2.0 Consensus size: 58
21507983 AGTAAAGGTA
*
21507993 TATTTACTTGAATGGCAGTCACACCATCTATACTTGAAGTGGAAGGAAAACTAAGTGT
1 TATTTACTTGAATGGCAGTCACACCATCGATACTTGAAGTGGAAGGAAAACTAAGTGT
21508051 TATTTACTTGAATGGCAGTCACACCATCGATACTTGAAGTGGAAGGAAAACTAAGTGT
1 TATTTACTTGAATGGCAGTCACACCATCGATACTTGAAGTGGAAGGAAAACTAAGTGT
21508109 T
1 T
21508110 GTTTCACATT
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.29
Consensus pattern (58 bp):
TATTTACTTGAATGGCAGTCACACCATCGATACTTGAAGTGGAAGGAAAACTAAGTGT
Found at i:21512743 original size:63 final size:63
Alignment explanation
Indices: 21512644--21512834 Score: 346
Period size: 63 Copynumber: 3.0 Consensus size: 63
21512634 TAGGAGTTTG
* *
21512644 ATAATCCTATCACACATCGGTTAGTGCTTAATAAATTGATTTAGTTAGTGCAAAATACAATCA
1 ATAATCCTGTCACACATTGGTTAGTGCTTAATAAATTGATTTAGTTAGTGCAAAATACAATCA
21512707 ATAATCCTGTCACACATTGGTTAGTGCTTAATAAATTGATTTAGTTAGTGCAAAATACAATCA
1 ATAATCCTGTCACACATTGGTTAGTGCTTAATAAATTGATTTAGTTAGTGCAAAATACAATCA
* *
21512770 ATAATCCTGTCACACATTGGTTAGTGCTTAGTAAATTGATTTAGTCAGTGCAAAATACAATCA
1 ATAATCCTGTCACACATTGGTTAGTGCTTAATAAATTGATTTAGTTAGTGCAAAATACAATCA
21512833 AT
1 AT
21512835 CATTGAGTTT
Statistics
Matches: 124, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 124 1.00
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34
Consensus pattern (63 bp):
ATAATCCTGTCACACATTGGTTAGTGCTTAATAAATTGATTTAGTTAGTGCAAAATACAATCA
Found at i:21514048 original size:11 final size:9
Alignment explanation
Indices: 21514018--21514049 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
21514008 GAGGCTTGGG
*
21514018 GAGAGTGGA
1 GAGAATGGA
21514027 GAGAATGGA
1 GAGAATGGA
21514036 GAGAATGGA
1 GAGAATGGA
21514045 GAGAA
1 GAGAA
21514050 AGAGATGGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.44, C:0.00, G:0.47, T:0.09
Consensus pattern (9 bp):
GAGAATGGA
Found at i:21519306 original size:25 final size:25
Alignment explanation
Indices: 21519248--21519309 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 25
21519238 AATAAACGTG
*
21519248 ATTATAGGAATTAGAAATCACCATA
1 ATTATAGGGATTAGAAATCACCATA
* * *
21519273 ATTATAGGGATTGGGAATCATCATA
1 ATTATAGGGATTAGAAATCACCATA
21519298 ATTATAGGGATT
1 ATTATAGGGATT
21519310 TTATTTTGTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.40, C:0.08, G:0.19, T:0.32
Consensus pattern (25 bp):
ATTATAGGGATTAGAAATCACCATA
Found at i:21519332 original size:23 final size:23
Alignment explanation
Indices: 21519302--21519348 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
21519292 ATCATAATTA
* *
21519302 TAGGGATTTTATTTTGTTTATTC
1 TAGGGATTTTACTTTCTTTATTC
21519325 TAGGGATTTTACTTTCTTTATTC
1 TAGGGATTTTACTTTCTTTATTC
21519348 T
1 T
21519349 TTTTCTATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.17, C:0.09, G:0.15, T:0.60
Consensus pattern (23 bp):
TAGGGATTTTACTTTCTTTATTC
Found at i:21524749 original size:25 final size:25
Alignment explanation
Indices: 21524736--21524807 Score: 135
Period size: 25 Copynumber: 2.9 Consensus size: 25
21524726 AGAAATTAGA
21524736 AATCATCATAATTATAGGGATTGAG
1 AATCATCATAATTATAGGGATTGAG
21524761 AATCATCATAATTATAGGGATTGAG
1 AATCATCATAATTATAGGGATTGAG
*
21524786 AATTATCATAATTATAGGGATT
1 AATCATCATAATTATAGGGATT
21524808 TTATTTTCTT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 46 1.00
ACGTcount: A:0.40, C:0.07, G:0.18, T:0.35
Consensus pattern (25 bp):
AATCATCATAATTATAGGGATTGAG
Found at i:21525846 original size:2 final size:2
Alignment explanation
Indices: 21525841--21525894 Score: 99
Period size: 2 Copynumber: 27.0 Consensus size: 2
21525831 ACACACACAC
*
21525841 AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
21525883 AT AT AT AT AT AT
1 AT AT AT AT AT AT
21525895 TGTGTTCTAG
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:21533938 original size:27 final size:27
Alignment explanation
Indices: 21533908--21533959 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
21533898 ACTAAACAGT
*
21533908 GAAAGCAAACGAAGTTCAAGCAACGAA
1 GAAAGCAAACGAAGTTCAAACAACGAA
*
21533935 GAAAGCAAATGAAGTTCAAACAACG
1 GAAAGCAAACGAAGTTCAAACAACG
21533960 GTGAATCTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.52, C:0.17, G:0.21, T:0.10
Consensus pattern (27 bp):
GAAAGCAAACGAAGTTCAAACAACGAA
Found at i:21536710 original size:15 final size:16
Alignment explanation
Indices: 21536692--21536723 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
21536682 TTATTAAACT
21536692 TGATATTATTT-ATAA
1 TGATATTATTTCATAA
21536707 TGATATTATTTCATAA
1 TGATATTATTTCATAA
21536723 T
1 T
21536724 CCATTTATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.38, C:0.03, G:0.06, T:0.53
Consensus pattern (16 bp):
TGATATTATTTCATAA
Found at i:21537266 original size:2 final size:2
Alignment explanation
Indices: 21537261--21537287 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
21537251 ACACACACAC
21537261 GT GT GT GT GT GT GT GT GT GT GT GT GT G
1 GT GT GT GT GT GT GT GT GT GT GT GT GT G
21537288 AAAAACTCAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.52, T:0.48
Consensus pattern (2 bp):
GT
Found at i:21548954 original size:26 final size:26
Alignment explanation
Indices: 21548916--21548967 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21548906 AAATGCACTT
*
21548916 AACAAAAGAGTATTCTCCGCAAAAGC
1 AACAAAAGAGTATTCTCCACAAAAGC
* *
21548942 AACAAAAGGGTATTCTCTACAAAAGC
1 AACAAAAGAGTATTCTCCACAAAAGC
21548968 CATATTTGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.46, C:0.21, G:0.15, T:0.17
Consensus pattern (26 bp):
AACAAAAGAGTATTCTCCACAAAAGC
Found at i:21550724 original size:2 final size:2
Alignment explanation
Indices: 21550717--21550743 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
21550707 GAGAAGAAGG
21550717 GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA G
21550744 GTAATCTTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:21551085 original size:20 final size:20
Alignment explanation
Indices: 21551062--21551099 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
21551052 CTTTATCTAT
21551062 TTTGAATTGATTTGGGCTAA
1 TTTGAATTGATTTGGGCTAA
*
21551082 TTTGGATTGATTTGGGCT
1 TTTGAATTGATTTGGGCT
21551100 TTTTTTTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.05, G:0.29, T:0.47
Consensus pattern (20 bp):
TTTGAATTGATTTGGGCTAA
Found at i:21558833 original size:13 final size:13
Alignment explanation
Indices: 21558815--21558856 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
21558805 TAATTAAAAA
21558815 TCTAAACAATAAT
1 TCTAAACAATAAT
*
21558828 TCTAAACATTAAT
1 TCTAAACAATAAT
*
21558841 TCCCAAAC-ATAAT
1 T-CTAAACAATAAT
21558854 TCT
1 TCT
21558857 TAATGTTTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
12 1 0.04
13 18 0.75
14 5 0.21
ACGTcount: A:0.45, C:0.21, G:0.00, T:0.33
Consensus pattern (13 bp):
TCTAAACAATAAT
Found at i:21558833 original size:85 final size:85
Alignment explanation
Indices: 21558688--21559175 Score: 617
Period size: 85 Copynumber: 5.8 Consensus size: 85
21558678 TTTTAATTCC
** * * * * *
21558688 AATGTTTAATTCTAGCATATTGTCAATTATTTTAAATAAAAGTCTTAACAATAATTCTAAATATT
1 AATGTTTAATTCTAGCATATTACCAATCATTTTAATTAAAAATCTAAACAATAATTCTAAACATT
**
21558753 AATTTTCAAACATAATTCTT
66 AATTCCCAAACATAATTCTT
* * *
21558773 AGTGTTTAATTCCAACATATTACCAATCATTTTAATTAAAAATCTAAACAATAATTCTAAACATT
1 AATGTTTAATTCTAGCATATTACCAATCATTTTAATTAAAAATCTAAACAATAATTCTAAACATT
21558838 AATTCCCAAACATAATTCTT
66 AATTCCCAAACATAATTCTT
* *
21558858 AATGTTTAATTCTAGCATATTACCAATCATTTTAATTGAAAATCCAAACAATAATTCTAAACATT
1 AATGTTTAATTCTAGCATATTACCAATCATTTTAATTAAAAATCTAAACAATAATTCTAAACATT
** *
21558923 AATTTTCAAACATAATTTTT
66 AATTCCCAAACATAATTCTT
* * * * ** *
21558943 AATATTTAATTCCAACAAATTACCAATCATTTTAATTAATTATTTAAACAATAATTCTAAACATT
1 AATGTTTAATTCTAGCATATTACCAATCATTTTAATTAAAAATCTAAACAATAATTCTAAACATT
* *
21559008 AATTCCCCAACTTAATTCTT
66 AATTCCCAAACATAATTCTT
*
21559028 AATGTTTAATTCTAGCATATTACCAATCATTTTAATTAAAAAT-TCAAATAATAATTCTAAACAT
1 AATGTTTAATTCTAGCATATTACCAATCATTTTAATTAAAAATCT-AAACAATAATTCTAAACAT
*
21559092 TAATTCCCAAACATAATTCTC
65 TAATTCCCAAACATAATTCTT
* * * ** * *
21559113 AATGCTTAATTCTAGC--A-T-CAAATCATTCTAATTAATTATCCAAACAATAATCCTAAACATT
1 AATGTTTAATTCTAGCATATTACCAATCATTTTAATTAAAAATCTAAACAATAATTCTAAACATT
21559174 AA
66 AA
21559176 GCTCTTTGAA
Statistics
Matches: 349, Mismatches: 52, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
81 37 0.11
82 1 0.00
83 1 0.00
84 1 0.00
85 309 0.89
ACGTcount: A:0.43, C:0.16, G:0.03, T:0.39
Consensus pattern (85 bp):
AATGTTTAATTCTAGCATATTACCAATCATTTTAATTAAAAATCTAAACAATAATTCTAAACATT
AATTCCCAAACATAATTCTT
Found at i:21560085 original size:22 final size:23
Alignment explanation
Indices: 21560060--21560106 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
21560050 ATTTTTATGT
21560060 ATTACTA-CAAGAACTAAG-CTAA
1 ATTACTATCAA-AACTAAGTCTAA
*
21560082 ATTACTATCAAAATTAAGTCTAA
1 ATTACTATCAAAACTAAGTCTAA
21560105 AT
1 AT
21560107 AACTCTATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 13 0.59
23 9 0.41
ACGTcount: A:0.49, C:0.15, G:0.06, T:0.30
Consensus pattern (23 bp):
ATTACTATCAAAACTAAGTCTAA
Found at i:21563003 original size:6 final size:6
Alignment explanation
Indices: 21562982--21563020 Score: 53
Period size: 6 Copynumber: 6.5 Consensus size: 6
21562972 TAATAAAAAT
*
21562982 AAAAGA AGAAAAA AAAAG- AAAAGA AAAAGA AAAAGA AAA
1 AAAAGA A-AAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAA
21563021 TAAATAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
5 5 0.17
6 19 0.66
7 5 0.17
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:21563014 original size:17 final size:18
Alignment explanation
Indices: 21562976--21563020 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 18
21562966 CAACAATAAT
*
21562976 AAAAATAAAAGAAGAAAA
1 AAAAAGAAAAGAAGAAAA
*
21562994 AAAAAGAAAAGAA-AAAG
1 AAAAAGAAAAGAAGAAAA
21563011 AAAAAGAAAA
1 AAAAAGAAAA
21563021 TAAATAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 13 0.52
18 12 0.48
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.02
Consensus pattern (18 bp):
AAAAAGAAAAGAAGAAAA
Found at i:21563826 original size:10 final size:10
Alignment explanation
Indices: 21563785--21563843 Score: 57
Period size: 11 Copynumber: 5.6 Consensus size: 10
21563775 TGTTCTTGCA
21563785 AAATAAAAAT
1 AAATAAAAAT
*
21563795 AAAATAATAAT
1 -AAATAAAAAT
*
21563806 TAATAATAAAAT
1 AAAT-A-AAAAT
21563818 AAATAAAAAT
1 AAATAAAAAT
21563828 AAATTAAAAA-
1 AAA-TAAAAAT
21563838 AAATAA
1 AAATAA
21563844 GTTAGAATGC
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
9 3 0.07
10 14 0.34
11 17 0.41
12 7 0.17
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (10 bp):
AAATAAAAAT
Found at i:21563828 original size:18 final size:20
Alignment explanation
Indices: 21563791--21563843 Score: 58
Period size: 18 Copynumber: 2.8 Consensus size: 20
21563781 TGCAAAATAA
*
21563791 AAATAAAAT-AATAATTAAT
1 AAATAAAATAAATAATAAAT
21563810 -AATAAAATAAATAA-AAAT
1 AAATAAAATAAATAATAAAT
*
21563828 AAATTAAAAAAAATAA
1 AAA-TAAAATAAATAA
21563844 GTTAGAATGC
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
18 11 0.38
19 7 0.24
20 11 0.38
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (20 bp):
AAATAAAATAAATAATAAAT
Found at i:21563839 original size:14 final size:15
Alignment explanation
Indices: 21563785--21563843 Score: 66
Period size: 15 Copynumber: 3.8 Consensus size: 15
21563775 TGTTCTTGCA
21563785 AAATAAAAATAAAAT
1 AAATAAAAATAAAAT
*
21563800 AATAATTAATAATAAAAT
1 -A-AA-TAAAAATAAAAT
*
21563818 AAATAAAAATAAATT
1 AAATAAAAATAAAAT
21563833 AAA-AAAAATAA
1 AAATAAAAATAA
21563844 GTTAGAATGC
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
14 8 0.21
15 13 0.34
16 3 0.08
17 3 0.08
18 11 0.29
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (15 bp):
AAATAAAAATAAAAT
Found at i:21578675 original size:14 final size:14
Alignment explanation
Indices: 21578656--21578683 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
21578646 TACAAGTCAG
21578656 GTAAATGGAATATT
1 GTAAATGGAATATT
21578670 GTAAATGGAATATT
1 GTAAATGGAATATT
21578684 TCTATCTATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.21, T:0.36
Consensus pattern (14 bp):
GTAAATGGAATATT
Found at i:21583333 original size:2 final size:2
Alignment explanation
Indices: 21583326--21583353 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
21583316 TGTTTTTCTT
21583326 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
21583354 GTTAAAAGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:21605422 original size:22 final size:21
Alignment explanation
Indices: 21605397--21605446 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
21605387 ATTATAAAAA
21605397 ATTTATAAATAAAAAATAATAT
1 ATTTATAAATAAAAAATAAT-T
* * *
21605419 ATTTA-ATATTAAAAATTATT
1 ATTTATAAATAAAAAATAATT
21605439 ATTTATAA
1 ATTTATAA
21605447 TCGAGTTTCG
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
20 6 0.26
21 12 0.52
22 5 0.22
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
ATTTATAAATAAAAAATAATT
Found at i:21605447 original size:22 final size:21
Alignment explanation
Indices: 21605397--21605447 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 21
21605387 ATTATAAAAA
21605397 ATTTATAA-ATAAAAAATAAT
1 ATTTATAATATAAAAAATAAT
* *
21605417 ATATT-TAATATTAAAAATTATT
1 AT-TTATAATA-TAAAAAATAAT
21605439 ATTTATAAT
1 ATTTATAAT
21605448 CGAGTTTCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
20 5 0.20
21 5 0.20
22 15 0.60
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
ATTTATAATATAAAAAATAAT
Found at i:21610998 original size:23 final size:22
Alignment explanation
Indices: 21610968--21611012 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
21610958 TTGCTTGGGA
21610968 TACTTCTTCTCATT-TCTCCCTT
1 TACTTCTTCTC-TTCTCTCCCTT
*
21610990 TACTCTCTTTTCTTCTCTCCCTT
1 TACT-TCTTCTCTTCTCTCCCTT
21611013 CTGCTTTCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.07, C:0.38, G:0.00, T:0.56
Consensus pattern (22 bp):
TACTTCTTCTCTTCTCTCCCTT
Found at i:21611279 original size:19 final size:20
Alignment explanation
Indices: 21611252--21611297 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
21611242 AGGAGACAAG
*
21611252 ATAAAATTTTTA-AAATAAA
1 ATAATATTTTTATAAATAAA
*
21611271 ATAATA-TTTTATTAATAAA
1 ATAATATTTTTATAAATAAA
21611290 ATAATATT
1 ATAATATT
21611298 AAAATATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 5 0.22
19 17 0.74
20 1 0.04
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (20 bp):
ATAATATTTTTATAAATAAA
Found at i:21616372 original size:30 final size:30
Alignment explanation
Indices: 21616313--21616377 Score: 73
Period size: 29 Copynumber: 2.2 Consensus size: 30
21616303 ATTAAATTAG
*
21616313 TTAATTGAAGATTGTTAAAAACTATTTAAA
1 TTAATTGAAGATTGTTAAAAACTAATTAAA
*
21616343 TTAATT-AAGATTTTTACATAAA-TAATTAAA
1 TTAATTGAAGATTGTTA-A-AAACTAATTAAA
21616373 -TAATT
1 TTAATT
21616378 TAACTAACGA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
29 14 0.45
30 14 0.45
31 3 0.10
ACGTcount: A:0.48, C:0.03, G:0.06, T:0.43
Consensus pattern (30 bp):
TTAATTGAAGATTGTTAAAAACTAATTAAA
Found at i:21622580 original size:21 final size:20
Alignment explanation
Indices: 21622556--21622594 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
21622546 ATTTATACTA
21622556 ATAAGCTTAACCTAAGGTTCC
1 ATAAG-TTAACCTAAGGTTCC
* *
21622577 ATAAGTTGACCTAGGGTT
1 ATAAGTTAACCTAAGGTT
21622595 TAATTGGGCT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.31
Consensus pattern (20 bp):
ATAAGTTAACCTAAGGTTCC
Done.