Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr4
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 31929104
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 1434590 characters in sequence are not A, C, G, or T
File 68 of 82
Found at i:24691806 original size:13 final size:14
Alignment explanation
Indices: 24691781--24691809 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
24691771 ATCATATCAT
24691781 TTTTAACTAAATAA
1 TTTTAACTAAATAA
24691795 TTTTAA-TAAATAA
1 TTTTAACTAAATAA
24691808 TT
1 TT
24691810 ACAGCTGATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (14 bp):
TTTTAACTAAATAA
Found at i:24693974 original size:12 final size:12
Alignment explanation
Indices: 24693957--24694149 Score: 129
Period size: 12 Copynumber: 16.1 Consensus size: 12
24693947 AATGCATGGG
*
24693957 TACATAAATATA
1 TACATACATATA
24693969 TACATACATATA
1 TACATACATATA
* * *
24693981 TATATATATATG
1 TACATACATATA
** **
24693993 TATGTATGTATA
1 TACATACATATA
* *
24694005 TATATATATATA
1 TACATACATATA
*
24694017 CACATACATATA
1 TACATACATATA
* *
24694029 CATATACATATA
1 TACATACATATA
* * *
24694041 TACACACACACA
1 TACATACATATA
* *
24694053 CACATACATACA
1 TACATACATATA
*
24694065 TACATAC--ACA
1 TACATACATATA
*
24694075 TACATACATACA
1 TACATACATATA
*
24694087 TACATACATACA
1 TACATACATATA
*
24694099 TACATACATACA
1 TACATACATATA
*
24694111 TACATATATATATA
1 TAC--ATACATATA
24694125 TACATACATATA
1 TACATACATATA
* *
24694137 TATATATATATA
1 TACATACATATA
24694149 T
1 T
24694150 CCACAGGGAG
Statistics
Matches: 150, Mismatches: 27, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
10 10 0.07
12 130 0.87
14 10 0.07
ACGTcount: A:0.49, C:0.17, G:0.02, T:0.33
Consensus pattern (12 bp):
TACATACATATA
Found at i:24693983 original size:4 final size:4
Alignment explanation
Indices: 24693964--24694042 Score: 68
Period size: 4 Copynumber: 19.8 Consensus size: 4
24693954 GGGTACATAA
* * * * *
24693964 ATAT ATAC ATAC ATAT ATAT ATAT ATAT GTAT GTAT GTAT ATAT ATAT
1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT
* * * * *
24694012 ATAT ACAC ATAC ATAT ACAT ATAC ATAT ATA
1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATA
24694043 CACACACACA
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
4 63 1.00
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.41
Consensus pattern (4 bp):
ATAT
Found at i:24693987 original size:6 final size:6
Alignment explanation
Indices: 24693964--24694042 Score: 68
Period size: 6 Copynumber: 13.2 Consensus size: 6
24693954 GGGTACATAA
* * * * *
24693964 ATATAT ACATAC ATATAT ATATAT ATATGT ATGTAT GTATAT ATATAT
1 ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT
* * * * *
24694012 ATATAC ACATAC ATATAC ATATAC ATATAT A
1 ATATAT ATATAT ATATAT ATATAT ATATAT A
24694043 CACACACACA
Statistics
Matches: 59, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
6 59 1.00
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.41
Consensus pattern (6 bp):
ATATAT
Found at i:24694043 original size:8 final size:8
Alignment explanation
Indices: 24693964--24694149 Score: 92
Period size: 8 Copynumber: 23.8 Consensus size: 8
24693954 GGGTACATAA
24693964 ATATATAC
1 ATATATAC
* *
24693972 ATACATAT
1 ATATATAC
*
24693980 ATATATAT
1 ATATATAC
* *
24693988 ATATGTAT
1 ATATATAC
* * *
24693996 GTATGTAT
1 ATATATAC
*
24694004 ATATATAT
1 ATATATAC
*
24694012 ATATACAC
1 ATATATAC
* *
24694020 ATACATAT
1 ATATATAC
*
24694028 ACATATAC
1 ATATATAC
24694036 ATATATAC
1 ATATATAC
* * *
24694044 ACACACAC
1 ATATATAC
* *
24694052 ACACATAC
1 ATATATAC
*
24694060 ATACATAC
1 ATATATAC
*
24694068 --ATACAC
1 ATATATAC
*
24694074 ATACATAC
1 ATATATAC
*
24694082 ATACATAC
1 ATATATAC
*
24694090 ATACATAC
1 ATATATAC
*
24694098 ATACATAC
1 ATATATAC
*
24694106 ATACATAC
1 ATATATAC
24694114 ATATAT--
1 ATATATAC
24694120 ATATATAC
1 ATATATAC
* *
24694128 ATACATAT
1 ATATATAC
*
24694136 ATATATAT
1 ATATATAC
24694144 ATATAT
1 ATATAT
24694150 CCACAGGGAG
Statistics
Matches: 145, Mismatches: 29, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
6 10 0.07
8 135 0.93
ACGTcount: A:0.48, C:0.17, G:0.02, T:0.33
Consensus pattern (8 bp):
ATATATAC
Found at i:24694061 original size:4 final size:4
Alignment explanation
Indices: 24694018--24694134 Score: 125
Period size: 4 Copynumber: 30.2 Consensus size: 4
24694008 ATATATATAC
* * * * * * *
24694018 ACAT ACAT ATAC ATAT ACAT ATAT ACAC ACAC ACAC ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
24694066 ACAT AC-- ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* *
24694112 ACAT --AT ATAT ATAT ACAT ACAT A
1 ACAT ACAT ACAT ACAT ACAT ACAT A
24694135 TATATATATA
Statistics
Matches: 100, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
2 4 0.04
4 96 0.96
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26
Consensus pattern (4 bp):
ACAT
Found at i:24694121 original size:2 final size:2
Alignment explanation
Indices: 24694114--24694149 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
24694104 ACATACATAC
* *
24694114 AT AT AT AT AT AT AC AT AC AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24694150 CCACAGGGAG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:24696331 original size:6 final size:6
Alignment explanation
Indices: 24696320--24696389 Score: 52
Period size: 6 Copynumber: 11.5 Consensus size: 6
24696310 TACACTAATG
* * * * * *
24696320 TAAATA TAAATA TAAAAA TATATGCA TATATA TATATA TATATA TATATA
1 TAAATA TAAATA TAAATA TAAAT--A TAAATA TAAATA TAAATA TAAATA
*
24696370 TATATA TAAATA -AAATA TAA
1 TAAATA TAAATA TAAATA TAA
24696390 TAACTTTTAA
Statistics
Matches: 57, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
5 5 0.09
6 46 0.81
8 6 0.11
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.39
Consensus pattern (6 bp):
TAAATA
Found at i:24696350 original size:2 final size:2
Alignment explanation
Indices: 24696345--24696377 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
24696335 AAATATATGC
24696345 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
24696378 AATAAAATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:24696455 original size:21 final size:21
Alignment explanation
Indices: 24696431--24696479 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
24696421 AATATGAATC
*
24696431 TTAAATTTATAAATA-ATTTT
1 TTAAATTGATAAATATATTTT
24696451 GTT-AATCTGATAAATATATTTT
1 -TTAAAT-TGATAAATATATTTT
24696473 TTAAATT
1 TTAAATT
24696480 AAAAATGTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
20 3 0.12
21 13 0.54
22 8 0.33
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.53
Consensus pattern (21 bp):
TTAAATTGATAAATATATTTT
Found at i:24702745 original size:15 final size:15
Alignment explanation
Indices: 24702725--24702754 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
24702715 AGATTGGCCT
24702725 TCAGAACATATTTCA
1 TCAGAACATATTTCA
24702740 TCAGAACATATTTCA
1 TCAGAACATATTTCA
24702755 AGCAATTACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.20, G:0.07, T:0.33
Consensus pattern (15 bp):
TCAGAACATATTTCA
Found at i:24708852 original size:211 final size:211
Alignment explanation
Indices: 24708488--24708909 Score: 781
Period size: 211 Copynumber: 2.0 Consensus size: 211
24708478 AGTTACACAC
* **
24708488 CTCACCCTGGAGAAGGAAAGGACAATCAAAGAACAAAATGAAAGAGTAGGAATAGGCTTTGATTC
1 CTCACCCTGGAGAAGGAAAGGACAATCAAAGAACAAAATGAAAGAGTAGGAATAGGCTTTCACCC
24708553 CATATTCATTCCAACAGATACTTCGGGTCAAGTCTGTCTTATTATATATCTTGAGATAAAAAAGA
66 CATATTCATTCCAACAGATACTTCGGGTCAAGTCTGTCTTATTATATATCTTGAGATAAAAAAGA
24708618 ATTAGATATATGTGCTGGAAGACAAATTTGGCCAATAAAACAAGAACCAACTGCTCTCATATCTC
131 ATTAGATATATGTGCTGGAAGACAAATTTGGCCAATAAAACAAGAACCAACTGCTCTCATATCTC
24708683 TTTCAATGAGATTAAT
196 TTTCAATGAGATTAAT
24708699 CTCACCCTGGAGAAGGAAAGGACAATCAAAGAACAAAATGAAAGAGTAGGAATAGGCTTTCACCC
1 CTCACCCTGGAGAAGGAAAGGACAATCAAAGAACAAAATGAAAGAGTAGGAATAGGCTTTCACCC
* *
24708764 CATATTCATTCCAACATATACTTCTGGTCAAGTCTGTCTTATTATATATCTTGAGATAAAAAAGA
66 CATATTCATTCCAACAGATACTTCGGGTCAAGTCTGTCTTATTATATATCTTGAGATAAAAAAGA
* *
24708829 ATTCGATATATGTGCTGGAAGACAAATTTGGCCAATAAAATAAGAACCAACTGCTCTCATATCTC
131 ATTAGATATATGTGCTGGAAGACAAATTTGGCCAATAAAACAAGAACCAACTGCTCTCATATCTC
24708894 TTTCAATGAGATTAAT
196 TTTCAATGAGATTAAT
24708910 ACTAACTTCA
Statistics
Matches: 204, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
211 204 1.00
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (211 bp):
CTCACCCTGGAGAAGGAAAGGACAATCAAAGAACAAAATGAAAGAGTAGGAATAGGCTTTCACCC
CATATTCATTCCAACAGATACTTCGGGTCAAGTCTGTCTTATTATATATCTTGAGATAAAAAAGA
ATTAGATATATGTGCTGGAAGACAAATTTGGCCAATAAAACAAGAACCAACTGCTCTCATATCTC
TTTCAATGAGATTAAT
Found at i:24716351 original size:11 final size:11
Alignment explanation
Indices: 24716337--24716373 Score: 74
Period size: 11 Copynumber: 3.4 Consensus size: 11
24716327 TAACAAAATC
24716337 TTTGGTGTTTG
1 TTTGGTGTTTG
24716348 TTTGGTGTTTG
1 TTTGGTGTTTG
24716359 TTTGGTGTTTG
1 TTTGGTGTTTG
24716370 TTTG
1 TTTG
24716374 ATTCGTAAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.35, T:0.65
Consensus pattern (11 bp):
TTTGGTGTTTG
Found at i:24720531 original size:23 final size:25
Alignment explanation
Indices: 24720504--24720549 Score: 78
Period size: 23 Copynumber: 1.9 Consensus size: 25
24720494 AAATGAAAAA
24720504 TGTACCAAG-AAAAT-TATTCATTT
1 TGTACCAAGAAAAATGTATTCATTT
24720527 TGTACCAAGAAAAATGTATTCAT
1 TGTACCAAGAAAAATGTATTCAT
24720550 GCCAAAAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 9 0.43
24 5 0.24
25 7 0.33
ACGTcount: A:0.41, C:0.13, G:0.11, T:0.35
Consensus pattern (25 bp):
TGTACCAAGAAAAATGTATTCATTT
Found at i:24739295 original size:2 final size:2
Alignment explanation
Indices: 24739288--24739332 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
24739278 GCACATCACT
24739288 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
24739330 GA G
1 GA G
24739333 GAATGGCTAG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:24740089 original size:22 final size:22
Alignment explanation
Indices: 24740063--24740107 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
24740053 AACATCTTTA
24740063 TTTCAATACTTGGATACTATAT
1 TTTCAATACTTGGATACTATAT
24740085 TTTCAATACTTGGATACTATAT
1 TTTCAATACTTGGATACTATAT
24740107 T
1 T
24740108 GTAAGTGAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.13, G:0.09, T:0.47
Consensus pattern (22 bp):
TTTCAATACTTGGATACTATAT
Found at i:24745229 original size:2 final size:2
Alignment explanation
Indices: 24745224--24745259 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
24745214 CTTTTATATA
24745224 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
24745260 GATATCAGTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:24753667 original size:3 final size:3
Alignment explanation
Indices: 24753659--24753701 Score: 68
Period size: 3 Copynumber: 14.0 Consensus size: 3
24753649 CCTTCCTTTA
*
24753659 CTC CTC CTCC CTC CTC CTC CTC CTC CTC CTC CAC CTC CTC CTC
1 CTC CTC CT-C CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC
24753702 GTTTCTTTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
3 34 0.92
4 3 0.08
ACGTcount: A:0.02, C:0.67, G:0.00, T:0.30
Consensus pattern (3 bp):
CTC
Found at i:24757049 original size:49 final size:50
Alignment explanation
Indices: 24756995--24757102 Score: 114
Period size: 49 Copynumber: 2.2 Consensus size: 50
24756985 TTAACTTATA
* * *
24756995 ATAAAATAATTAATTATT-AAATATATAATAATAGTTTTATTTGTAAAATT
1 ATAAAATAATTAATTATTGAAATATAAAATAATAATTTTATTT-CAAAATT
* * * *
24757045 -TAAAA-ATTTTATTGTTGATATATAAAATAATAATTTTATTTCAAAATT
1 ATAAAATAATTAATTATTGAAATATAAAATAATAATTTTATTTCAAAATT
*
24757093 ATAAATTAAT
1 ATAAAATAAT
24757103 AGTTCTAAGT
Statistics
Matches: 46, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
48 14 0.30
49 30 0.65
50 2 0.04
ACGTcount: A:0.49, C:0.01, G:0.04, T:0.46
Consensus pattern (50 bp):
ATAAAATAATTAATTATTGAAATATAAAATAATAATTTTATTTCAAAATT
Found at i:24763087 original size:2 final size:2
Alignment explanation
Indices: 24763080--24763106 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
24763070 CAAATTGAAG
24763080 GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA G
24763107 GAGGGGGGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:24774054 original size:153 final size:153
Alignment explanation
Indices: 24773812--24774671 Score: 556
Period size: 153 Copynumber: 5.7 Consensus size: 153
24773802 ACCCGCAATG
* * * * * *
24773812 TCACCTTTAGCTAATGCCCCACCATC-TTCGTCTACTAATAATCCATC-TCTGTCCAATTCAACA
1 TCACCTTCAGCTACTACCCAACCATCGTT-GCCTACTAATAATCCACCTTC-GTCCAATTCAAC-
** * * ** * *
24773875 AACA-ACTTGGCACAGCCTGCTGTGGCACCTATGGCTTCTACTCATCCGTCTTCTCCAGATAAAG
63 GCCAGGCTTGGCACAACCTGCAATGGCACCTATGGCTTCTACTCATCCATCTTCACCAGATAAAG
* * * * *
24773939 TACCAAGTTTGGCAGTGCCTGCTACC
128 TGCCAAGCTTGGCACTGCCTGCAACA
* * *
24773965 TCGCCTTCAGCTACTACCCAACCATCGTTGCCTACTAATAATTCACCTTCGTCCAATTCAATGCC
1 TCACCTTCAGCTACTACCCAACCATCGTTGCCTACTAATAATCCACCTTCGTCCAATTCAACGCC
* * * * *
24774030 AGGCTTGGCACAGCCTGCTATGGCACCTATGGATTCTACTCATCCATCTGCACCAGGTAAAGTGC
66 AGGCTTGGCACAACCTGCAATGGCACCTATGGCTTCTACTCATCCATCTTCACCAGATAAAGTGC
*
24774095 CAAGCTTGGCACTGCCTGCAACG
131 CAAGCTTGGCACTGCCTGCAACA
* ** * * **
24774118 TCTCCTTCAGAAACTACCCAACCATCGTTG-C--C---TAATCCATCTTCGTCCAACTCAACATC
1 TCACCTTCAGCTACTACCCAACCATCGTTGCCTACTAATAATCCACCTTCGTCCAATTCAACGCC
* * *
24774177 AGGCTTGACACAACATGGAATGGCACCTATGGCTTCCT-CTC-TGCCATCTTCACCAGAT-AAGA
66 AGGCTTGGCACAACCTGCAATGGCACCTATGGCTT-CTACTCAT-CCATCTTCACCAGATAAAG-
*
24774239 TGCCAAGCTTGACACTGCCTGCAACA
128 TGCCAAGCTTGGCACTGCCTGCAACA
* * * * * *
24774265 TCACCTTCTGCTACCAGCCAACCATCTTTGCCTACTAATAGTCCATCATTC-TCCAATTCAACGC
1 TCACCTTCAGCTACTACCCAACCATCGTTGCCTACTAATAATCCA-CCTTCGTCCAATTCAACGC
* * * ** * *
24774329 CAAGCTTGGCACAACCTGGAATGGCACCTATGGCTTCCT-CTCAACCATCATT-GTCAAACTCAA
65 CAGGCTTGGCACAACCTGCAATGGCACCTATGGCTT-CTACTCATCCATC-TTCACCAGA-TAAA
* * * * **
24774392 -CGCCGAGCTTGGGACTGCCTTCAATG
127 GTGCCAAGCTTGGCACTGCCTGCAACA
* * * * * * * * * * * *
24774418 TCGCCTTCTGCTACCAGCCAACCATCTTTACCTGCAAATATTCCATCGTTC-TCCAACTCAACAC
1 TCACCTTCAGCTACTACCCAACCATCGTTGCCTACTAATAATCCA-CCTTCGTCCAATTCAACGC
* * * ** * *
24774482 CAAGCTTGGCACAACCTGGAATGGCACCTATGGCTTCCT-CTCAACCATCATT-GTCAAACTCAA
65 CAGGCTTGGCACAACCTGCAATGGCACCTATGGCTT-CTACTCATCCATC-TTCACCAGA-TAAA
* * * * **
24774545 -CGCCAAGCTTGGGACTGCCTTCGATG
127 GTGCCAAGCTTGGCACTGCCTGCAACA
* * * * * * * * * * *
24774571 TCGCCTTCTGCTACCAGCCAACCATCTTTGCCCACAAATATTCCATCGTTC-TCCAACTCAACAC
1 TCACCTTCAGCTACTACCCAACCATCGTTGCCTACTAATAATCCA-CCTTCGTCCAATTCAACGC
* * * *
24774635 CAAGCTTGGCACAACCTGGAATGCCACCTATGTCTTC
65 CAGGCTTGGCACAACCTGCAATGGCACCTATGGCTTC
24774672 CTCGCAACCA
Statistics
Matches: 606, Mismatches: 84, Indels: 35
0.84 0.12 0.05
Matches are distributed among these distances:
146 4 0.01
147 113 0.19
148 3 0.00
150 2 0.00
152 4 0.01
153 468 0.77
154 10 0.02
155 2 0.00
ACGTcount: A:0.25, C:0.34, G:0.15, T:0.26
Consensus pattern (153 bp):
TCACCTTCAGCTACTACCCAACCATCGTTGCCTACTAATAATCCACCTTCGTCCAATTCAACGCC
AGGCTTGGCACAACCTGCAATGGCACCTATGGCTTCTACTCATCCATCTTCACCAGATAAAGTGC
CAAGCTTGGCACTGCCTGCAACA
Found at i:24774323 original size:300 final size:300
Alignment explanation
Indices: 24773897--24774708 Score: 773
Period size: 306 Copynumber: 2.7 Consensus size: 300
24773887 CAGCCTGCTG
* * * * *
24773897 TGGCACCTATGGCTT-CTACTCATCCGTCTTCTCCAGATAAAGTACCAAGTTTGGCAGTGCCTGC
1 TGGCACCTATGGCTTCCT-CTC-TCCATCTTCACCAGATAAA-TGCCAAGCTTGGCACTGCCTGC
* * * * * * * *
24773961 TACCTCGCCTTCAGCTACTACCCAACCATCGTTGCCTACTAATAATTCA-CCTTCGTCCAATTCA
63 AACATCGCCTTCTGCTACCAGCCAACCATCTTTGCCTACTAATAATCCATCATTC-TCCAATTCA
* * * ** * **
24774025 ATGCCAGGCTTGGCACAGCCTGCTATGGCACCTATGGATT-CTACTCATCCATC-TG-CACCAGG
127 ACGCCAAGCTTGGCACAACCTGGAATGGCACCTATGGATTCCT-CTCAACCATCATGTCA--AAC
* * * *
24774087 TAAAGTGCCAAGCTTGGCACTGCCTGCAACGTCTCCTTCAGAAACTACCCAACCATCGTTGCCT-
189 TAAA-CGCCAAGCTTGGCACTGCCTGCAACGTCGCCTTCAGAAACCACCCAACCATCGTTACCTA
* *
24774151 A-A-TCCATC-TTCGTCCAACTCAACATCAGGCTTGACACAACATGGAA
253 ATATTCCATCGTTC-TCCAACTCAACACCAAGCTTGACACAACATGGAA
*
24774197 TGGCACCTATGGCTTCCTCTCTGCCATCTTCACCAGATAAGATGCCAAGCTTGACACTGCCTGCA
1 TGGCACCTATGGCTTCCTCTCT-CCATCTTCACCAGATAA-ATGCCAAGCTTGGCACTGCCTGCA
* *
24774262 ACATCACCTTCTGCTACCAGCCAACCATCTTTGCCTACTAATAGTCCATCATTCTCCAATTCAAC
64 ACATCGCCTTCTGCTACCAGCCAACCATCTTTGCCTACTAATAATCCATCATTCTCCAATTCAAC
* *
24774327 GCCAAGCTTGGCACAACCTGGAATGGCACCTATGGCTTCCTCTCAACCATCATTGTCAAACTCAA
129 GCCAAGCTTGGCACAACCTGGAATGGCACCTATGGATTCCTCTCAACCATCA-TGTCAAACTAAA
* * * * * ** * *
24774392 CGCCGAGCTTGGGACTGCCTTCAATGTCGCCTTCTGCTACCAGCCAACCATCTTTACCTGCAAAT
193 CGCCAAGCTTGGCACTGCCTGCAACGTCGCCTTCAGAAACCACCCAACCATCGTTACCT---AAT
* *
24774457 ATTCCATCGTTCTCCAACTCAACACCAAGCTTGGCACAACCTGGAA
255 ATTCCATCGTTCTCCAACTCAACACCAAGCTTGACACAACATGGAA
* ** * * * * *
24774503 TGGCACCTATGGCTTCCTCTCAACCATCATT-GTCAAACTCAACGCCAAGCTTGGGACTGCCTTC
1 TGGCACCTATGGCTTCCTCTC-TCCATC-TTCACCAGA-TAAATGCCAAGCTTGGCACTGCCTGC
* ** * * * * *
24774567 GATGTCGCCTTCTGCTACCAGCCAACCATCTTTGCCCACAAATATTCCATCGTTCTCCAACTCAA
63 AACATCGCCTTCTGCTACCAGCCAACCATCTTTGCCTACTAATAATCCATCATTCTCCAATTCAA
* * ** * *
24774632 CACCAAGCTTGGCACAACCTGGAATGCCACCTATGTCTTCCTCGCAACCATCAT-TACCAAACTC
128 CGCCAAGCTTGGCACAACCTGGAATGGCACCTATGGATTCCTCTCAACCATCATGT--CAAACTA
*
24774696 AACGCCGAGCTTG
191 AACGCCAAGCTTG
24774709 ACACAACCTG
Statistics
Matches: 427, Mismatches: 65, Indels: 34
0.81 0.12 0.06
Matches are distributed among these distances:
299 1 0.00
300 189 0.44
301 13 0.03
302 2 0.00
303 2 0.00
304 2 0.00
305 2 0.00
306 209 0.49
307 7 0.02
ACGTcount: A:0.25, C:0.34, G:0.15, T:0.25
Consensus pattern (300 bp):
TGGCACCTATGGCTTCCTCTCTCCATCTTCACCAGATAAATGCCAAGCTTGGCACTGCCTGCAAC
ATCGCCTTCTGCTACCAGCCAACCATCTTTGCCTACTAATAATCCATCATTCTCCAATTCAACGC
CAAGCTTGGCACAACCTGGAATGGCACCTATGGATTCCTCTCAACCATCATGTCAAACTAAACGC
CAAGCTTGGCACTGCCTGCAACGTCGCCTTCAGAAACCACCCAACCATCGTTACCTAATATTCCA
TCGTTCTCCAACTCAACACCAAGCTTGACACAACATGGAA
Found at i:24774672 original size:153 final size:153
Alignment explanation
Indices: 24774153--24774708 Score: 767
Period size: 153 Copynumber: 3.6 Consensus size: 153
24774143 CGTTGCCTAA
* * * *
24774153 TCCATC-TTCGTCCAACTCAACATCAGGCTTGACACAACATGGAATGGCACCTATGGCTTCCTCT
1 TCCATCGTTC-TCCAACTCAACACCAAGCTTGGCACAACCTGGAATGGCACCTATGGCTTCCTCT
** * * * ** * ** *
24774217 CTGCCATC-TTCACCAGA-TAAGATGCCAAGCTTGACACTGCCTGCAACATCACCTTCTGCTACC
65 CAACCATCATT-ACCAAACTCA-ACGCCAAGCTTGGGACTGCCTTCAATGTCGCCTTCTGCTACC
* *
24774280 AGCCAACCATCTTTGCCTACTAATAG
128 AGCCAACCATCTTTGCCTACAAATAT
* * *
24774306 TCCATCATTCTCCAATTCAACGCCAAGCTTGGCACAACCTGGAATGGCACCTATGGCTTCCTCTC
1 TCCATCGTTCTCCAACTCAACACCAAGCTTGGCACAACCTGGAATGGCACCTATGGCTTCCTCTC
** *
24774371 AACCATCATTGTCAAACTCAACGCCGAGCTTGGGACTGCCTTCAATGTCGCCTTCTGCTACCAGC
66 AACCATCATTACCAAACTCAACGCCAAGCTTGGGACTGCCTTCAATGTCGCCTTCTGCTACCAGC
* *
24774436 CAACCATCTTTACCTGCAAATAT
131 CAACCATCTTTGCCTACAAATAT
24774459 TCCATCGTTCTCCAACTCAACACCAAGCTTGGCACAACCTGGAATGGCACCTATGGCTTCCTCTC
1 TCCATCGTTCTCCAACTCAACACCAAGCTTGGCACAACCTGGAATGGCACCTATGGCTTCCTCTC
** *
24774524 AACCATCATTGTCAAACTCAACGCCAAGCTTGGGACTGCCTTCGATGTCGCCTTCTGCTACCAGC
66 AACCATCATTACCAAACTCAACGCCAAGCTTGGGACTGCCTTCAATGTCGCCTTCTGCTACCAGC
*
24774589 CAACCATCTTTGCCCACAAATAT
131 CAACCATCTTTGCCTACAAATAT
* * *
24774612 TCCATCGTTCTCCAACTCAACACCAAGCTTGGCACAACCTGGAATGCCACCTATGTCTTCCTCGC
1 TCCATCGTTCTCCAACTCAACACCAAGCTTGGCACAACCTGGAATGGCACCTATGGCTTCCTCTC
*
24774677 AACCATCATTACCAAACTCAACGCCGAGCTTG
66 AACCATCATTACCAAACTCAACGCCAAGCTTG
24774709 ACACAACCTG
Statistics
Matches: 362, Mismatches: 38, Indels: 6
0.89 0.09 0.01
Matches are distributed among these distances:
153 355 0.98
154 7 0.02
ACGTcount: A:0.26, C:0.35, G:0.15, T:0.25
Consensus pattern (153 bp):
TCCATCGTTCTCCAACTCAACACCAAGCTTGGCACAACCTGGAATGGCACCTATGGCTTCCTCTC
AACCATCATTACCAAACTCAACGCCAAGCTTGGGACTGCCTTCAATGTCGCCTTCTGCTACCAGC
CAACCATCTTTGCCTACAAATAT
Found at i:24774719 original size:66 final size:66
Alignment explanation
Indices: 24774625--24774774 Score: 183
Period size: 66 Copynumber: 2.3 Consensus size: 66
24774615 ATCGTTCTCC
* * *
24774625 AACTCAACACCAAGCTTGGCACAACCTGGAATGCCACCTATGTCTTCCTCGCAACCATCATTACC
1 AACTCAACACCAAGCTTGACACAACCTGGAATGCCACCAATGGCTTCCTCGCAACCATCATTACC
24774690 A
66 A
* * * * * * **
24774691 AACTCAACGCCGAGCTTGACACAACCTGGTATGGCACCAATGGCTTCGTCTCAACCATCATTGTC
1 AACTCAACACCAAGCTTGACACAACCTGGAATGCCACCAATGGCTTCCTCGCAACCATCATTACC
24774756 A
66 A
* *
24774757 AATTCAACTCCAAGCTTG
1 AACTCAACACCAAGCTTG
24774775 GGACTGCCTT
Statistics
Matches: 70, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
66 70 1.00
ACGTcount: A:0.29, C:0.33, G:0.15, T:0.23
Consensus pattern (66 bp):
AACTCAACACCAAGCTTGACACAACCTGGAATGCCACCAATGGCTTCCTCGCAACCATCATTACC
A
Found at i:24774736 original size:219 final size:219
Alignment explanation
Indices: 24774472--24774902 Score: 693
Period size: 219 Copynumber: 2.0 Consensus size: 219
24774462 ATCGTTCTCC
* *
24774472 AACTCAACACCAAGCTTGGCACAACCTGGAATGGCACCTATGGCTTCCTCTCAACCATCATTGTC
1 AACTCAACACCAAGCTTGACACAACCTGGAATGGCACCAATGGCTTCCTCTCAACCATCATTGTC
*
24774537 AAACTCAACGCCAAGCTTGGGACTGCCTTCGATGTCGCCTTCTGCTACCAGCCAACCATCTTTGC
66 AAACTCAACGCCAAGCTTGGGACTGCCTTCAATGTCGCCTTCTGCTACCAGCCAACCATCTTTGC
** *
24774602 CCACAAATATTCCATCGTTCTCCAACTCAACACCAAGCTTGGCACAACCTGGAATGCCACCTAT-
131 CCACAAATAGCCCATCGTTCTCCAACTCAACACCAAGCTTGACACAACCTGGAATGCCACCTATA
24774666 GTCTTCCTCGCAACCATCATTACCA
196 G-CTTCCTCGCAACCATCATTACCA
* * * *
24774691 AACTCAACGCCGAGCTTGACACAACCTGGTATGGCACCAATGGCTTCGTCTCAACCATCATTGTC
1 AACTCAACACCAAGCTTGACACAACCTGGAATGGCACCAATGGCTTCCTCTCAACCATCATTGTC
* *
24774756 AAATTCAACTCCAAGCTTGGGACTGCCTTCAATGTCGCCTTCTGCTACCAGCCAACCATCTTTGC
66 AAACTCAACGCCAAGCTTGGGACTGCCTTCAATGTCGCCTTCTGCTACCAGCCAACCATCTTTGC
* ** *
24774821 CTACAAATAGCCCATCGTTCTCCAACTCAACGTCAAGCTTGACACAACCTGGAATGGCACCTATA
131 CCACAAATAGCCCATCGTTCTCCAACTCAACACCAAGCTTGACACAACCTGGAATGCCACCTATA
*
24774886 GCTTCCTCTCAACCATC
196 GCTTCCTCGCAACCATC
24774903 TTCGCCTGAT
Statistics
Matches: 194, Mismatches: 17, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
219 193 0.99
220 1 0.01
ACGTcount: A:0.26, C:0.35, G:0.15, T:0.24
Consensus pattern (219 bp):
AACTCAACACCAAGCTTGACACAACCTGGAATGGCACCAATGGCTTCCTCTCAACCATCATTGTC
AAACTCAACGCCAAGCTTGGGACTGCCTTCAATGTCGCCTTCTGCTACCAGCCAACCATCTTTGC
CCACAAATAGCCCATCGTTCTCCAACTCAACACCAAGCTTGACACAACCTGGAATGCCACCTATA
GCTTCCTCGCAACCATCATTACCA
Found at i:24774900 original size:153 final size:156
Alignment explanation
Indices: 24774679--24775027 Score: 397
Period size: 153 Copynumber: 2.3 Consensus size: 156
24774669 TTCCTCGCAA
* * * *
24774679 CCATCATTA-CCAAACTCAACGCCGAGCTTGACACAACCTGGTATGGCACCAATGGCTTCGTCTC
1 CCATCATTATCC-AACTCAACGCCAAGCTTGACACAACCTGGAATGGCACCAATAGCTTCCTCTC
* ** * * **
24774743 AACCATCATT-GTCAAATTCAA-CTCCAAGCTTGGGACTGCCTTC-AATGTCGCCTTCTGCTACC
65 AACCATC-TTCGCCAAATAAAATC-CCAAGCTTGGCACTGCCTTCAAAT-TCACCTTCTAATACC
* * *
24774805 AGCCAACCATCTTTGCCT-ACAA-A-TAGC
127 ACCCAACCATCGTTGCCTAACAATATTAAC
* * * *
24774832 CCATCGTTCTCCAACTCAACGTCAAGCTTGACACAACCTGGAATGGCACCTATAGCTTCCTCTCA
1 CCATCATTATCCAACTCAACGCCAAGCTTGACACAACCTGGAATGGCACCAATAGCTTCCTCTCA
** *
24774897 ACCATCTTCGCCTGATAAAATCCCAAGCTTGGCATTGCCTTCAAATTCACCTTCTAATACCACCC
66 ACCATCTTCGCCAAATAAAATCCCAAGCTTGGCACTGCCTTCAAATTCACCTTCTAATACCACCC
* *
24774962 AACCGTCGTTGCCTAACAATATTAAT
131 AACCATCGTTGCCTAACAATATTAAC
*
24774988 CCATCATTATCCAACTCAACCCCAAGCTTGACACAACCTG
1 CCATCATTATCCAACTCAACGCCAAGCTTGACACAACCTG
24775028 CAATATCACC
Statistics
Matches: 162, Mismatches: 27, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
152 2 0.01
153 111 0.69
154 10 0.06
155 1 0.01
156 38 0.23
ACGTcount: A:0.28, C:0.34, G:0.13, T:0.25
Consensus pattern (156 bp):
CCATCATTATCCAACTCAACGCCAAGCTTGACACAACCTGGAATGGCACCAATAGCTTCCTCTCA
ACCATCTTCGCCAAATAAAATCCCAAGCTTGGCACTGCCTTCAAATTCACCTTCTAATACCACCC
AACCATCGTTGCCTAACAATATTAAC
Found at i:24774925 original size:372 final size:375
Alignment explanation
Indices: 24774322--24775027 Score: 1012
Period size: 372 Copynumber: 1.9 Consensus size: 375
24774312 ATTCTCCAAT
* *
24774322 TCAACGCCAAGCTTGGCACAACCTGGAATGGCACCTATGGCTTCCTCTCAACCATCATTGTCAAA
1 TCAACGCCAAGCTTGACACAACCTGGAATGGCACCAATGGCTTCCTCTCAACCATCATTGTCAAA
* *
24774387 CTCAACGCCGAGCTTGGGACTGCCTTCAATGTCGCCTTCTGCTACCAGCCAACCATCTTTACCTG
66 CTCAACGCCAAGCTTGGGACTGCCTTCAATGTCGCCTTCTGCTACCAGCCAACCATCTTTACCTA
** * *
24774452 CAAATATTCCATCGTTCTCCAACTCAACACCAAGCTTGGCACAACCTGGAATGGCACCTATGGCT
131 CAAATAGCCCATCGTTCTCCAACTCAACACCAAGCTTGACACAACCTGGAATGGCACCTATAGCT
* * * * * *
24774517 TCCTCTCAACCATCATTGTCAAACTCAACGCCAAGCTTGGGACTGCCTTC-GATGTCGCCTTCTG
196 TCCTCTCAACCATCATTGCCAAACTAAACGCCAAGCTTGGCACTGCCTTCAAAT-TCACCTTCTA
* * * * * * *
24774581 CTACCAGCCAACCATCTTTGCC-CACAA-A-TATTCCATCGTTCTCCAACTCAACACCAAGCTTG
260 ATACCACCCAACCATCGTTGCCTAACAATATTAATCCATCATTATCCAACTCAACACCAAGCTTG
*
24774643 GCACAACCTGGAATGCCACCTATGTCTTCCTCGCAACCATCATTACCAAAC
325 ACACAACCTGGAATGCCACCTATGTCTTCCTCGCAACCATCATTACCAAAC
* * *
24774694 TCAACGCCGAGCTTGACACAACCTGGTATGGCACCAATGGCTTCGTCTCAACCATCATTGTCAAA
1 TCAACGCCAAGCTTGACACAACCTGGAATGGCACCAATGGCTTCCTCTCAACCATCATTGTCAAA
* * *
24774759 TTCAACTCCAAGCTTGGGACTGCCTTCAATGTCGCCTTCTGCTACCAGCCAACCATCTTTGCCTA
66 CTCAACGCCAAGCTTGGGACTGCCTTCAATGTCGCCTTCTGCTACCAGCCAACCATCTTTACCTA
**
24774824 CAAATAGCCCATCGTTCTCCAACTCAACGTCAAGCTTGACACAACCTGGAATGGCACCTATAGCT
131 CAAATAGCCCATCGTTCTCCAACTCAACACCAAGCTTGACACAACCTGGAATGGCACCTATAGCT
** *
24774889 TCCTCTCAACCATC-TTCGCCTGA-TAAAATC-CCAAGCTTGGCATTGCCTTCAAATTCACCTTC
196 TCCTCTCAACCATCATT-GCCAAACT-AAA-CGCCAAGCTTGGCACTGCCTTCAAATTCACCTTC
* *
24774951 TAATACCACCCAACCGTCGTTGCCTAACAATATTAATCCATCATTATCCAACTCAACCCCAAGCT
258 TAATACCACCCAACCATCGTTGCCTAACAATATTAATCCATCATTATCCAACTCAACACCAAGCT
24775016 TGACACAACCTG
323 TGACACAACCTG
24775028 CAATATCACC
Statistics
Matches: 292, Mismatches: 35, Indels: 11
0.86 0.10 0.03
Matches are distributed among these distances:
371 3 0.01
372 242 0.83
373 7 0.02
374 1 0.00
375 39 0.13
ACGTcount: A:0.26, C:0.35, G:0.14, T:0.25
Consensus pattern (375 bp):
TCAACGCCAAGCTTGACACAACCTGGAATGGCACCAATGGCTTCCTCTCAACCATCATTGTCAAA
CTCAACGCCAAGCTTGGGACTGCCTTCAATGTCGCCTTCTGCTACCAGCCAACCATCTTTACCTA
CAAATAGCCCATCGTTCTCCAACTCAACACCAAGCTTGACACAACCTGGAATGGCACCTATAGCT
TCCTCTCAACCATCATTGCCAAACTAAACGCCAAGCTTGGCACTGCCTTCAAATTCACCTTCTAA
TACCACCCAACCATCGTTGCCTAACAATATTAATCCATCATTATCCAACTCAACACCAAGCTTGA
CACAACCTGGAATGCCACCTATGTCTTCCTCGCAACCATCATTACCAAAC
Found at i:24776550 original size:37 final size:38
Alignment explanation
Indices: 24776499--24776582 Score: 116
Period size: 37 Copynumber: 2.2 Consensus size: 38
24776489 ATTCAAAAAA
* * *
24776499 TAAAAAATATTAGATTTCAAAGTGTTTTTCA-ATGCCAT
1 TAAAAAA-AATAGATTTCAAAGTATTTTTCATAAGCCAT
*
24776537 TAAAAAAAATAGATTTCAAAGTATTTTTCATAAGCTAT
1 TAAAAAAAATAGATTTCAAAGTATTTTTCATAAGCCAT
24776575 TAAAAAAA
1 TAAAAAAA
24776583 GTGTTTTCAT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
37 21 0.51
38 20 0.49
ACGTcount: A:0.48, C:0.08, G:0.08, T:0.36
Consensus pattern (38 bp):
TAAAAAAAATAGATTTCAAAGTATTTTTCATAAGCCAT
Found at i:24777513 original size:24 final size:22
Alignment explanation
Indices: 24777486--24777533 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
24777476 TTTTGAACTA
24777486 TTTAGTAAATTTTAAATTAATTTT
1 TTTAGTAAA-TTT-AATTAATTTT
* *
24777510 TTTATTATATTTAATTAATTTT
1 TTTAGTAAATTTAATTAATTTT
24777532 TT
1 TT
24777534 ATATTTTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 12 0.55
23 3 0.14
24 7 0.32
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (22 bp):
TTTAGTAAATTTAATTAATTTT
Found at i:24777675 original size:26 final size:25
Alignment explanation
Indices: 24777631--24777679 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 25
24777621 GTTAAATATA
24777631 GATATGTTATAAATAATAATAACGT
1 GATATGTTATAAATAATAATAACGT
24777656 GATATGTTTATATAAT-ATAATAAC
1 GATATG-TTATA-AATAATAATAAC
24777680 ATAATCATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 6 0.27
26 13 0.59
27 3 0.14
ACGTcount: A:0.47, C:0.04, G:0.10, T:0.39
Consensus pattern (25 bp):
GATATGTTATAAATAATAATAACGT
Found at i:24783595 original size:25 final size:25
Alignment explanation
Indices: 24783561--24783619 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 25
24783551 AAGAAAATAA
24783561 AATCCCTATAATTATGATGACTCCT
1 AATCCCTATAATTATGATGACTCCT
* * *
24783586 AATCCCTATAATTATGGTGATTTCT
1 AATCCCTATAATTATGATGACTCCT
*
24783611 AATTCCTAT
1 AATCCCTAT
24783620 TATCACGTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.31, C:0.20, G:0.08, T:0.41
Consensus pattern (25 bp):
AATCCCTATAATTATGATGACTCCT
Found at i:24788084 original size:23 final size:23
Alignment explanation
Indices: 24788056--24788102 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
24788046 AAATAGGAAA
24788056 AGAATAAAGAAAATAAAATCCCT
1 AGAATAAAGAAAATAAAATCCCT
*
24788079 AGAATAAAGAAAATAAAATTCCT
1 AGAATAAAGAAAATAAAATCCCT
24788102 A
1 A
24788103 TAATTATGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.62, C:0.11, G:0.09, T:0.19
Consensus pattern (23 bp):
AGAATAAAGAAAATAAAATCCCT
Found at i:24788133 original size:25 final size:25
Alignment explanation
Indices: 24788099--24788156 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
24788089 AAATAAAATT
24788099 CCTATAATTATGATGATTCCCAATC
1 CCTATAATTATGATGATTCCCAATC
* * * *
24788124 CCTATAATTATGGTGATTTCTAATT
1 CCTATAATTATGATGATTCCCAATC
24788149 CCTATAAT
1 CCTATAAT
24788157 CACGTTTATT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.31, C:0.19, G:0.09, T:0.41
Consensus pattern (25 bp):
CCTATAATTATGATGATTCCCAATC
Found at i:24791273 original size:26 final size:26
Alignment explanation
Indices: 24791231--24791282 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
24791221 CTAGGAAACT
24791231 TGTGACATATCTCTAATGCTATTAGA
1 TGTGACATATCTCTAATGCTATTAGA
* *
24791257 TGTGACATATGTTTAATGCTATTAGA
1 TGTGACATATCTCTAATGCTATTAGA
24791283 GCTTCTCTCT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.12, G:0.17, T:0.40
Consensus pattern (26 bp):
TGTGACATATCTCTAATGCTATTAGA
Found at i:24798805 original size:30 final size:27
Alignment explanation
Indices: 24798742--24798810 Score: 86
Period size: 28 Copynumber: 2.5 Consensus size: 27
24798732 ACAAGAAAAT
24798742 TTAAATAAA-TTTTTATTTTTATTATG
1 TTAAATAAATTTTTTATTTTTATTATG
* *
24798768 TTTAATAAATTTTTATATTTTTATTTTG
1 TTAAATAAATTTTT-TATTTTTATTATG
24798796 AATTAAATAAATTTT
1 --TTAAATAAATTTT
24798811 AATAATTAAG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
26 8 0.22
27 4 0.11
28 12 0.33
30 12 0.33
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (27 bp):
TTAAATAAATTTTTTATTTTTATTATG
Found at i:24798986 original size:21 final size:21
Alignment explanation
Indices: 24798962--24799004 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
24798952 TGATATTTTG
24798962 ATTAATAATAAT-TATTTATTT
1 ATTAATAATAATAT-TTTATTT
*
24798983 ATTAATTATAATATTTTATTT
1 ATTAATAATAATATTTTATTT
24799004 A
1 A
24799005 ATTTAAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 19 0.95
22 1 0.05
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (21 bp):
ATTAATAATAATATTTTATTT
Found at i:24800486 original size:20 final size:20
Alignment explanation
Indices: 24800461--24800503 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
24800451 AATAATAAAC
24800461 AAATTAAAAGAAATAACATA
1 AAATTAAAAGAAATAACATA
* * *
24800481 AAATTAAAATAACTAACTTA
1 AAATTAAAAGAAATAACATA
24800501 AAA
1 AAA
24800504 GTAACTTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.67, C:0.07, G:0.02, T:0.23
Consensus pattern (20 bp):
AAATTAAAAGAAATAACATA
Found at i:24809939 original size:19 final size:19
Alignment explanation
Indices: 24809915--24809953 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
24809905 TGTTCCCCTT
* *
24809915 TGTACTTTGTTGGATCATA
1 TGTACTTTATGGGATCATA
24809934 TGTACTTTATGGGATCATA
1 TGTACTTTATGGGATCATA
24809953 T
1 T
24809954 AATGGTGATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.23, C:0.10, G:0.21, T:0.46
Consensus pattern (19 bp):
TGTACTTTATGGGATCATA
Found at i:24811652 original size:13 final size:13
Alignment explanation
Indices: 24811642--24811667 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
24811632 TGTTCCTTGT
24811642 CTAACTTCCTTAC
1 CTAACTTCCTTAC
24811655 CTAACTTCCTTAC
1 CTAACTTCCTTAC
24811668 AGATGTTTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.38, G:0.00, T:0.38
Consensus pattern (13 bp):
CTAACTTCCTTAC
Found at i:24841923 original size:12 final size:12
Alignment explanation
Indices: 24841906--24841939 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
24841896 TCTTAACAGA
24841906 ATTATTATTAAC
1 ATTATTATTAAC
24841918 ATTATTATTAAC
1 ATTATTATTAAC
*
24841930 ACTATTATTA
1 ATTATTATTA
24841940 TTTCTAGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (12 bp):
ATTATTATTAAC
Found at i:24868874 original size:4 final size:4
Alignment explanation
Indices: 24868865--24868889 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
24868855 ATTAAACGAG
24868865 AATA AATA AATA AATA AATA AATA A
1 AATA AATA AATA AATA AATA AATA A
24868890 GTATTTTAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AATA
Found at i:24869198 original size:20 final size:20
Alignment explanation
Indices: 24869168--24869236 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 20
24869158 AATTAGCAAC
24869168 AAAAAATTTGTAATAAATAAT
1 AAAAAA-TTGTAATAAATAAT
*
24869189 AAAAAATTGTAACAAAAATAAT
1 AAAAAATTGT-A-ATAAATAAT
* * **
24869211 AAAAAGTTGTATTAAGGAAT
1 AAAAAATTGTAATAAATAAT
24869231 AAAAAA
1 AAAAAA
24869237 AATGTTACAC
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
20 14 0.36
21 8 0.21
22 17 0.44
ACGTcount: A:0.64, C:0.01, G:0.09, T:0.26
Consensus pattern (20 bp):
AAAAAATTGTAATAAATAAT
Found at i:24869918 original size:29 final size:29
Alignment explanation
Indices: 24869886--24869942 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
24869876 ATCATAATAT
24869886 TTATTTGACTAT-AAATAAAAATATAAAAC
1 TTATTTGA-TATAAAATAAAAATATAAAAC
*
24869915 TTATTTGATTTAAAATAAAAATATAAAA
1 TTATTTGATATAAAATAAAAATATAAAA
24869943 ACCTAATTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 2 0.08
29 24 0.92
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.37
Consensus pattern (29 bp):
TTATTTGATATAAAATAAAAATATAAAAC
Found at i:24870598 original size:18 final size:19
Alignment explanation
Indices: 24870575--24870610 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
24870565 ATTTAAGTGT
*
24870575 AAAATATTTAT-AATATTA
1 AAAATATATATAAATATTA
24870593 AAAATATATATAAATATT
1 AAAATATATATAAATATT
24870611 TTTATACTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
AAAATATATATAAATATTA
Found at i:24895992 original size:14 final size:15
Alignment explanation
Indices: 24895956--24895996 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
24895946 TGCTACATTC
24895956 CTAAAA-AATATAAA
1 CTAAAAGAATATAAA
24895970 -TAAAGAGAAT-TAAA
1 CTAAA-AGAATATAAA
24895984 CTAAAAGAATATA
1 CTAAAAGAATATA
24895997 TTAGTTCACG
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
13 4 0.17
14 10 0.43
15 9 0.39
ACGTcount: A:0.66, C:0.05, G:0.07, T:0.22
Consensus pattern (15 bp):
CTAAAAGAATATAAA
Found at i:24898126 original size:29 final size:31
Alignment explanation
Indices: 24898074--24898131 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
24898064 CTTGTACCAT
*
24898074 AAATATTATTTTTTAAAATTAAAAAAAATTC
1 AAATAATATTTTTTAAAATTAAAAAAAATTC
24898105 AAATAATATTTTTT-AAA-TAAAAAAAAT
1 AAATAATATTTTTTAAAATTAAAAAAAAT
24898132 CATATATCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 10 0.38
30 3 0.12
31 13 0.50
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.40
Consensus pattern (31 bp):
AAATAATATTTTTTAAAATTAAAAAAAATTC
Found at i:24901593 original size:15 final size:15
Alignment explanation
Indices: 24901575--24901694 Score: 52
Period size: 15 Copynumber: 7.9 Consensus size: 15
24901565 AAAATTTAAA
24901575 ATATTAATATTTTAT
1 ATATTAATATTTTAT
*** *
24901590 ATA-TAAT-TCAAAC
1 ATATTAATATTTTAT
*
24901603 ATTATTAATA-TTAAT
1 A-TATTAATATTTTAT
* * *
24901618 ATGATTAAAATATTAA
1 AT-ATTAATATTTTAT
*
24901634 ATATTAATATTTTAA
1 ATATTAATATTTTAT
*
24901649 ATTATTAATGTTTTAT
1 A-TATTAATATTTTAT
*
24901665 TTATTAA-ATTATTAAT
1 ATATTAATATT-TT-AT
24901681 ATATTTAAT-TTTTA
1 ATA-TTAATATTTTA
24901695 ATGAGTATAA
Statistics
Matches: 77, Mismatches: 18, Indels: 20
0.67 0.16 0.17
Matches are distributed among these distances:
13 3 0.04
14 9 0.12
15 37 0.48
16 22 0.29
17 6 0.08
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (15 bp):
ATATTAATATTTTAT
Found at i:24901619 original size:26 final size:23
Alignment explanation
Indices: 24901570--24901657 Score: 79
Period size: 23 Copynumber: 3.6 Consensus size: 23
24901560 TTTGTAAAAT
24901570 TTAAAATATTAATATTTTATATATAA
1 TTAAAATATTAATA--TTA-ATATAA
*
24901596 TTCAAACATTATTAATATTAATATGA
1 TT-AAA-A-TATTAATATTAATATAA
*
24901622 TTAAAATATTAAATATTAATAT-T
1 TTAAAATATT-AATATTAATATAA
*
24901645 TTAAATTATTAAT
1 TTAAAATATTAAT
24901658 GTTTTATTTA
Statistics
Matches: 55, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
22 3 0.05
23 13 0.24
24 12 0.22
25 3 0.05
26 9 0.16
27 6 0.11
28 1 0.02
29 8 0.15
ACGTcount: A:0.49, C:0.02, G:0.01, T:0.48
Consensus pattern (23 bp):
TTAAAATATTAATATTAATATAA
Found at i:24901690 original size:16 final size:16
Alignment explanation
Indices: 24901611--24901696 Score: 56
Period size: 16 Copynumber: 5.4 Consensus size: 16
24901601 ACATTATTAA
*
24901611 TATTAATATGATTAAAA
1 TATTAATAT-ATTAAAT
24901628 TATTAA-ATATTAATAT
1 TATTAATATATTAA-AT
24901644 T-TTAA-ATTATT-AAT
1 TATTAATA-TATTAAAT
* *
24901658 GT-TTTATTTATTAAAT
1 -TATTAATATATTAAAT
*
24901674 TATTAATATATTTAAT
1 TATTAATATATTAAAT
*
24901690 TTTTAAT
1 TATTAAT
24901697 GAGTATAAAT
Statistics
Matches: 56, Mismatches: 7, Indels: 13
0.74 0.09 0.17
Matches are distributed among these distances:
14 2 0.04
15 20 0.36
16 28 0.50
17 6 0.11
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (16 bp):
TATTAATATATTAAAT
Found at i:24901792 original size:25 final size:26
Alignment explanation
Indices: 24901737--24901797 Score: 81
Period size: 25 Copynumber: 2.4 Consensus size: 26
24901727 TCAAAGTAAT
24901737 ATTAAATTATACATAAAATATTATTA
1 ATTAAATTATACATAAAATATTATTA
*
24901763 ATTAAATTATA-TTAAAATATTGA-TA
1 ATTAAATTATACATAAAATATT-ATTA
*
24901788 TTTAAATTAT
1 ATTAAATTAT
24901798 TAATATTTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
25 20 0.62
26 12 0.38
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.46
Consensus pattern (26 bp):
ATTAAATTATACATAAAATATTATTA
Found at i:24901815 original size:16 final size:15
Alignment explanation
Indices: 24901774--24901834 Score: 58
Period size: 15 Copynumber: 4.3 Consensus size: 15
24901764 TTAAATTATA
* *
24901774 TTAAAATATTGATAT
1 TTAAATTATTAATAT
24901789 TTAAATTATTAATAT
1 TTAAATTATTAATAT
*
24901804 TT---TAATTAAT-T
1 TTAAATTATTAATAT
*
24901815 ATAAATTATTAATAT
1 TTAAATTATTAATAT
24901830 TTAAA
1 TTAAA
24901835 AAATAAAAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
11 2 0.06
12 7 0.19
14 7 0.19
15 20 0.56
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.51
Consensus pattern (15 bp):
TTAAATTATTAATAT
Found at i:24902411 original size:14 final size:14
Alignment explanation
Indices: 24902389--24902440 Score: 58
Period size: 14 Copynumber: 3.9 Consensus size: 14
24902379 AATTTTAATT
*
24902389 AAATTAAATAAATA
1 AAATAAAATAAATA
24902403 AAATAAAATAAAT-
1 AAATAAAATAAATA
24902416 AAA-AAAAT-AATA
1 AAATAAAATAAATA
24902428 ATAATAAAA-AAAT
1 A-AATAAAATAAAT
24902441 GGGGATGGCT
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
11 3 0.09
12 6 0.18
13 5 0.15
14 19 0.58
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (14 bp):
AAATAAAATAAATA
Found at i:24902419 original size:9 final size:8
Alignment explanation
Indices: 24902394--24902440 Score: 58
Period size: 9 Copynumber: 5.5 Consensus size: 8
24902384 TAATTAAATT
24902394 AAATAAATA
1 AAATAAA-A
24902403 AAATAAAA
1 AAATAAAA
24902411 TAAATAAAA
1 -AAATAAAA
24902420 AAATAATAA
1 AAATAA-AA
*
24902429 TAATAAAA
1 AAATAAAA
24902437 AAAT
1 AAAT
24902441 GGGGATGGCT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
8 12 0.35
9 22 0.65
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (8 bp):
AAATAAAA
Found at i:24902430 original size:18 final size:17
Alignment explanation
Indices: 24902388--24902440 Score: 72
Period size: 17 Copynumber: 3.1 Consensus size: 17
24902378 AAATTTTAAT
*
24902388 TAAATTAAATAAATAAAA
1 TAAAATAAATAAA-AAAA
24902406 TAAAATAAATAAAAAAA
1 TAAAATAAATAAAAAAA
24902423 TAATAAT-AATAAAAAAA
1 TAA-AATAAATAAAAAAA
24902440 T
1 T
24902441 GGGGATGGCT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
17 18 0.55
18 15 0.45
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (17 bp):
TAAAATAAATAAAAAAA
Found at i:24904497 original size:4 final size:4
Alignment explanation
Indices: 24904488--24904512 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
24904478 TCAAACATAA
24904488 TCTT TCTT TCTT TCTT TCTT TCTT T
1 TCTT TCTT TCTT TCTT TCTT TCTT T
24904513 TACAAGTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TCTT
Found at i:24908294 original size:82 final size:82
Alignment explanation
Indices: 24908189--24908508 Score: 338
Period size: 82 Copynumber: 3.9 Consensus size: 82
24908179 AATAAACTCT
* *
24908189 TATAAT-TCAAGGTTGATTAATTATTATTAAATAAAATATCATTTATCATTTTATGATTACGTCA
1 TATAATGTCAAGGTTGACTAATTATCATTAAATAAAATATCATTTATCATTTTATGATTACGTCA
* * *
24908253 GGGTAACATAACGTTTA
66 CGCTAACATAACATTTA
* * * *
24908270 TATAATGTCAGGGTTGACTAATTATTATTAAATAAAATATTATTTATCATTTTATGATCT-CGTT
1 TATAATGTCAAGGTTGACTAATTATCATTAAATAAAATATCATTTATCATTTTATGAT-TACGTC
* *
24908334 ACGCTAATATAGCATTTA
65 ACGCTAACATAACATTTA
** * * * * *
24908352 TATCGTGTCAAGGTTGACTAATTATCATTAAATCAAATATTACTTATCATATTATGATTATGTCA
1 TATAATGTCAAGGTTGACTAATTATCATTAAATAAAATATCATTTATCATTTTATGATTACGTCA
* *
24908417 CGCTAATATAACATTGA
66 CGCTAACATAACATTTA
* ** * * * * * *
24908434 CATGGTCTCAAAGTTGAATAATTATCATTAAATCAAATATCAATTATCATTTTATGATCACGTCA
1 TATAATGTCAAGGTTGACTAATTATCATTAAATAAAATATCATTTATCATTTTATGATTACGTCA
* *
24908499 TGTTAACATA
66 CGCTAACATA
24908509 GTGTTTACAT
Statistics
Matches: 203, Mismatches: 33, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
81 7 0.03
82 195 0.96
83 1 0.00
ACGTcount: A:0.37, C:0.12, G:0.11, T:0.41
Consensus pattern (82 bp):
TATAATGTCAAGGTTGACTAATTATCATTAAATAAAATATCATTTATCATTTTATGATTACGTCA
CGCTAACATAACATTTA
Found at i:24908466 original size:164 final size:164
Alignment explanation
Indices: 24908195--24908492 Score: 389
Period size: 164 Copynumber: 1.8 Consensus size: 164
24908185 CTCTTATAAT
* * * * * *
24908195 TCAAGGTTGATTAATTATTATTAAATAAAATATCATTTATCATTTTATGATTACGTCAGGGTAAC
1 TCAAGGTTGACTAATTATCATTAAATAAAATATCACTTATCATATTATGATTACGTCACGCTAAC
* * * * ** * * * *
24908260 ATAACGTTTATATAATGTCAGGGTTGACTAATTATTATTAAATAAAATATTATTTATCATTTTAT
66 ATAACATTGACATAATCTCAAAGTTGAATAATTATCATTAAATAAAATATCAATTATCATTTTAT
24908325 GATCTCGTTACGCTAATATAGCATTTATATCGTG
131 GATCTCGTTACGCTAATATAGCATTTATATCGTG
* * * *
24908359 TCAAGGTTGACTAATTATCATTAAATCAAATATTACTTATCATATTATGATTATGTCACGCTAAT
1 TCAAGGTTGACTAATTATCATTAAATAAAATATCACTTATCATATTATGATTACGTCACGCTAAC
** *
24908424 ATAACATTGACATGGTCTCAAAGTTGAATAATTATCATTAAATCAAATATCAATTATCATTTTAT
66 ATAACATTGACATAATCTCAAAGTTGAATAATTATCATTAAATAAAATATCAATTATCATTTTAT
24908489 GATC
131 GATC
24908493 ACGTCATGTT
Statistics
Matches: 111, Mismatches: 23, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
164 111 1.00
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.41
Consensus pattern (164 bp):
TCAAGGTTGACTAATTATCATTAAATAAAATATCACTTATCATATTATGATTACGTCACGCTAAC
ATAACATTGACATAATCTCAAAGTTGAATAATTATCATTAAATAAAATATCAATTATCATTTTAT
GATCTCGTTACGCTAATATAGCATTTATATCGTG
Found at i:24909597 original size:45 final size:45
Alignment explanation
Indices: 24909515--24909693 Score: 193
Period size: 45 Copynumber: 4.0 Consensus size: 45
24909505 TTTCAATATG
* ** **
24909515 ACGTGTAACA-ATCTAACAATGGCTTGTTGTATATTTTTGTACATA
1 ACGTGTAACACA-CTAACCATGGCTTGTCATAGGTTTTTGTACATA
*
24909560 ACGTGTAACACACTAACCATGGCTTGTCATAGGTTTTTGTATA-A
1 ACGTGTAACACACTAACCATGGCTTGTCATAGGTTTTTGTACATA
* * * * *
24909604 AGTGTGTAACACGCTAACTATGGCTTGTCACAGGTTTTTGTACATG
1 A-CGTGTAACACACTAACCATGGCTTGTCATAGGTTTTTGTACATA
* *
24909650 ACGTGTAACACGA-TAACCATGACTTGTCATAAGTTTTTGTACAT
1 ACGTGTAACAC-ACTAACCATGGCTTGTCATAGGTTTTTGTACAT
24909694 GGCGTGTCAC
Statistics
Matches: 112, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
44 2 0.02
45 108 0.96
46 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (45 bp):
ACGTGTAACACACTAACCATGGCTTGTCATAGGTTTTTGTACATA
Found at i:24909701 original size:24 final size:24
Alignment explanation
Indices: 24909667--24909786 Score: 95
Period size: 24 Copynumber: 5.1 Consensus size: 24
24909657 ACACGATAAC
* *
24909667 CATGACTTGTCATAAGTTTTTGTA
1 CATGACGTGTCACAAGTTTTTGTA
* *
24909691 CATGGCGTGTCACAGGTTTTTGTA
1 CATGACGTGTCACAAGTTTTTGTA
* * * *
24909715 CATGACGTGTAACACG---CT-AA
1 CATGACGTGTCACAAGTTTTTGTA
* *
24909735 CCATGACTTGTCACAGGTTTTTGTA
1 -CATGACGTGTCACAAGTTTTTGTA
* *
24909760 CATGACGTGTTACAGGTTTTTGTA
1 CATGACGTGTCACAAGTTTTTGTA
24909784 CAT
1 CAT
24909787 AGCATGTAAC
Statistics
Matches: 75, Mismatches: 16, Indels: 10
0.74 0.16 0.10
Matches are distributed among these distances:
20 1 0.01
21 14 0.19
24 59 0.79
25 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.22, T:0.38
Consensus pattern (24 bp):
CATGACGTGTCACAAGTTTTTGTA
Found at i:24909736 original size:69 final size:69
Alignment explanation
Indices: 24909623--24909786 Score: 274
Period size: 69 Copynumber: 2.4 Consensus size: 69
24909613 CACGCTAACT
* *
24909623 ATGGCTTGTCACAGGTTTTTGTACATGACGTGTAACACGATAACCATGACTTGTCATAAGTTTTT
1 ATGGCGTGTCACAGGTTTTTGTACATGACGTGTAACACGATAACCATGACTTGTCACAAGTTTTT
24909688 GTAC
66 GTAC
* *
24909692 ATGGCGTGTCACAGGTTTTTGTACATGACGTGTAACACGCTAACCATGACTTGTCACAGGTTTTT
1 ATGGCGTGTCACAGGTTTTTGTACATGACGTGTAACACGATAACCATGACTTGTCACAAGTTTTT
24909757 GTAC
66 GTAC
* *
24909761 ATGACGTGTTACAGGTTTTTGTACAT
1 ATGGCGTGTCACAGGTTTTTGTACAT
24909787 AGCATGTAAC
Statistics
Matches: 89, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
69 89 1.00
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.36
Consensus pattern (69 bp):
ATGGCGTGTCACAGGTTTTTGTACATGACGTGTAACACGATAACCATGACTTGTCACAAGTTTTT
GTAC
Found at i:24909748 original size:45 final size:45
Alignment explanation
Indices: 24909698--24910003 Score: 247
Period size: 45 Copynumber: 6.6 Consensus size: 45
24909688 GTACATGGCG
24909698 TGTCACAGGTTTTTGTACATGACGTGTAACACGCTAACCATGACT
1 TGTCACAGGTTTTTGTACATGACGTGTAACACGCTAACCATGACT
* * * * *
24909743 TGTCACAGGTTTTTGTACATGACGTGTTACAGGTTTTTGTA-CAT-AGCA
1 TGTCACAGGTTTTTGTACATGACGTGTAACACG---CT-AACCATGA-CT
** * * * ** *
24909791 TGTAACAACAATATTTTTTTCAATATGTCGTGTAACAATCTAATCATGACT
1 TGT--C-AC-AGGTTTTTGT--ACATGACGTGTAACACGCTAACCATGACT
* * ** * *
24909842 TGTTATATATTTTTGTACATAACGTGTAACACGCTAATCATGACT
1 TGTCACAGGTTTTTGTACATGACGTGTAACACGCTAACCATGACT
* * * * *
24909887 TGTCATAGGTTTTTGTATAAGGCGTGTAACACGCTAACCATGGCT
1 TGTCACAGGTTTTTGTACATGACGTGTAACACGCTAACCATGACT
*
24909932 TGTCACAAGTTTTTGTACATGACGTGTAACACGCTAACCATGACT
1 TGTCACAGGTTTTTGTACATGACGTGTAACACGCTAACCATGACT
* * *
24909977 TGTCATAAGTTTTTGTACATAACGTGT
1 TGTCACAGGTTTTTGTACATGACGTGT
24910004 CACAGGTTTT
Statistics
Matches: 207, Mismatches: 41, Indels: 26
0.76 0.15 0.09
Matches are distributed among these distances:
45 155 0.75
47 10 0.05
48 9 0.04
49 1 0.00
50 2 0.01
51 10 0.05
52 8 0.04
54 12 0.06
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (45 bp):
TGTCACAGGTTTTTGTACATGACGTGTAACACGCTAACCATGACT
Found at i:24910019 original size:69 final size:69
Alignment explanation
Indices: 24909932--24910120 Score: 279
Period size: 69 Copynumber: 2.7 Consensus size: 69
24909922 AACCATGGCT
*
24909932 TGTCACAAGTTTTTGTACATGACGTGTAACACGCTAACCATGACTTGTCATAAGTTTTTGTACAT
1 TGTCACAAGTTTTTGTACATGACGTGTAACACGCTAACCATGACTTGTCACAAGTTTTTGTACAT
24909997 AACG
66 AACG
* * *
24910001 TGTCACAGGTTTTTGTACATGACGTGTAACACGCTAACGATGACTTGTCACAGGTTTTTGTACAT
1 TGTCACAAGTTTTTGTACATGACGTGTAACACGCTAACCATGACTTGTCACAAGTTTTTGTACAT
**
24910066 GGCG
66 AACG
* * * * *
24910070 TGTTATAAGTTTTTGTACATGTCGTGTAACATGCTAACCATAACTTGTCAC
1 TGTCACAAGTTTTTGTACATGACGTGTAACACGCTAACCATGACTTGTCAC
24910121 TAACGTGTAA
Statistics
Matches: 107, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
69 107 1.00
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35
Consensus pattern (69 bp):
TGTCACAAGTTTTTGTACATGACGTGTAACACGCTAACCATGACTTGTCACAAGTTTTTGTACAT
AACG
Found at i:24910100 original size:303 final size:303
Alignment explanation
Indices: 24909457--24910089 Score: 1061
Period size: 303 Copynumber: 2.1 Consensus size: 303
24909447 TTTTTTTAAT
* * * *
24909457 CATGGCGTGTAACATGTTTTTGTATATAGCATGTAACAACAGTATTTTTTTCAATATGACGTGTA
1 CATGGCGTGTTACAAGTTTTTGTACATAGCATGTAACAACAATATTTTTTTCAATATGACGTGTA
* * *
24909522 ACAATCTAACAATGGCTTGTTGTATATTTTTGTACATAACGTGTAACACACTAACCATGGCTTGT
66 ACAATCTAACAATGACTTGTTATATATTTTTGTACATAACGTGTAACACACTAACCATGACTTGT
* * *
24909587 CATAGGTTTTTGTATAAAGTGTGTAACACGCTAACTATGGCTTGTCACAGGTTTTTGTACATGAC
131 CATAGGTTTTTGTATAAAGCGTGTAACACGCTAACCATGGCTTGTCACAAGTTTTTGTACATGAC
**
24909652 GTGTAACACGATAACCATGACTTGTCATAAGTTTTTGTACATGGCGTGTCACAGGTTTTTGTACA
196 GTGTAACACGATAACCATGACTTGTCATAAGTTTTTGTACATAACGTGTCACAGGTTTTTGTACA
24909717 TGACGTGTAACACGCTAACCATGACTTGTCACAGGTTTTTGTA
261 TGACGTGTAACACGCTAACCATGACTTGTCACAGGTTTTTGTA
* * *
24909760 CATGACGTGTTACAGGTTTTTGTACATAGCATGTAACAACAATATTTTTTTCAATATGTCGTGTA
1 CATGGCGTGTTACAAGTTTTTGTACATAGCATGTAACAACAATATTTTTTTCAATATGACGTGTA
* *
24909825 ACAATCTAATC-ATGACTTGTTATATATTTTTGTACATAACGTGTAACACGCTAATCATGACTTG
66 ACAATCTAA-CAATGACTTGTTATATATTTTTGTACATAACGTGTAACACACTAACCATGACTTG
*
24909889 TCATAGGTTTTTGTATAAGGCGTGTAACACGCTAACCATGGCTTGTCACAAGTTTTTGTACATGA
130 TCATAGGTTTTTGTATAAAGCGTGTAACACGCTAACCATGGCTTGTCACAAGTTTTTGTACATGA
*
24909954 CGTGTAACACGCTAACCATGACTTGTCATAAGTTTTTGTACATAACGTGTCACAGGTTTTTGTAC
195 CGTGTAACACGATAACCATGACTTGTCATAAGTTTTTGTACATAACGTGTCACAGGTTTTTGTAC
*
24910019 ATGACGTGTAACACGCTAACGATGACTTGTCACAGGTTTTTGTA
260 ATGACGTGTAACACGCTAACCATGACTTGTCACAGGTTTTTGTA
*
24910063 CATGGCGTGTTATAAGTTTTTGTACAT
1 CATGGCGTGTTACAAGTTTTTGTACAT
24910090 GTCGTGTAAC
Statistics
Matches: 307, Mismatches: 22, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
303 306 1.00
304 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.37
Consensus pattern (303 bp):
CATGGCGTGTTACAAGTTTTTGTACATAGCATGTAACAACAATATTTTTTTCAATATGACGTGTA
ACAATCTAACAATGACTTGTTATATATTTTTGTACATAACGTGTAACACACTAACCATGACTTGT
CATAGGTTTTTGTATAAAGCGTGTAACACGCTAACCATGGCTTGTCACAAGTTTTTGTACATGAC
GTGTAACACGATAACCATGACTTGTCATAAGTTTTTGTACATAACGTGTCACAGGTTTTTGTACA
TGACGTGTAACACGCTAACCATGACTTGTCACAGGTTTTTGTA
Found at i:24911864 original size:25 final size:26
Alignment explanation
Indices: 24911828--24911889 Score: 67
Period size: 25 Copynumber: 2.5 Consensus size: 26
24911818 AGCTGACTTA
* *
24911828 TATATTATTTATTTA-TTTAAGAATTT
1 TATATTAATTATTAATTTTAA-AATTT
*
24911854 TAT-TTGATTA-TAATTTTAAAATTT
1 TATATTAATTATTAATTTTAAAATTT
24911878 TATATTAATTAT
1 TATATTAATTAT
24911890 ATTAAAAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
24 10 0.34
25 16 0.55
26 3 0.10
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (26 bp):
TATATTAATTATTAATTTTAAAATTT
Found at i:24911890 original size:25 final size:25
Alignment explanation
Indices: 24911843--24911890 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
24911833 TATTTATTTA
*
24911843 TTTAAGAATTTTATTTGATTATAAT
1 TTTAAGAATTTTATTTAATTATAAT
24911868 TTTAA-AATTTTATATTAATTATA
1 TTTAAGAATTTTAT-TTAATTATA
24911891 TTAAAAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 8 0.38
25 13 0.62
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (25 bp):
TTTAAGAATTTTATTTAATTATAAT
Found at i:24911898 original size:24 final size:24
Alignment explanation
Indices: 24911849--24911899 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
24911839 TTTATTTAAG
* **
24911849 AATTTTATTTGATTATAATTTTAA
1 AATTTTATTTAATTATAATTAAAA
24911873 AATTTTATATTAATTAT-ATTAAAA
1 AATTTTAT-TTAATTATAATTAAAA
24911897 AAT
1 AAT
24911900 AGACGAATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (24 bp):
AATTTTATTTAATTATAATTAAAA
Found at i:24912489 original size:2 final size:2
Alignment explanation
Indices: 24912482--24912525 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
24912472 CATGATGCCG
24912482 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
24912524 TA
1 TA
24912526 CACACACAAC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:24915597 original size:132 final size:134
Alignment explanation
Indices: 24915398--24915641 Score: 375
Period size: 132 Copynumber: 1.8 Consensus size: 134
24915388 GCACGATGCA
* * * * * *
24915398 TAATATGAAAATTTAATGTTAATTTTTCTTTTTATTTTATATCTATTTATATTAGTGAATTTGAA
1 TAATATGAAAATCTAATGTTAATTTTTCTTTCTACTTTATATCTATTTATATTAGTAAATCTAAA
* **
24915463 AACTTGTATAAATTTAAATTGTTAATGAAATTTTATTTTATAATTTAGTCAAGCACAATTTATGA
66 AACTTATATAAATTTAAATTGTTAATGAAATTTTATGCTATAATTTAGTCAAGCACAATTTATGA
24915528 TACT
131 TACT
* *
24915532 TAATGTGAAAATCTAATGTTAA-TTTT-TTTCTACTTTATGTCTATTTATATTAGTAAATCTAAA
1 TAATATGAAAATCTAATGTTAATTTTTCTTTCTACTTTATATCTATTTATATTAGTAAATCTAAA
24915595 AACTTATATAAATTTAAATTGTTAATGAAATTTTATGCTATAATTTA
66 AACTTATATAAATTTAAATTGTTAATGAAATTTTATGCTATAATTTA
24915642 ATTTTATATC
Statistics
Matches: 99, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
132 75 0.76
133 4 0.04
134 20 0.20
ACGTcount: A:0.37, C:0.06, G:0.08, T:0.49
Consensus pattern (134 bp):
TAATATGAAAATCTAATGTTAATTTTTCTTTCTACTTTATATCTATTTATATTAGTAAATCTAAA
AACTTATATAAATTTAAATTGTTAATGAAATTTTATGCTATAATTTAGTCAAGCACAATTTATGA
TACT
Found at i:24918737 original size:12 final size:12
Alignment explanation
Indices: 24918694--24918737 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
24918684 GAGGGTGTGG
*
24918694 GAGGGAGAGAGA
1 GAGGGAGACAGA
*
24918706 CAGGGAGACAGA
1 GAGGGAGACAGA
**
24918718 GACAGAGACAGA
1 GAGGGAGACAGA
24918730 GAGGGAGA
1 GAGGGAGA
24918738 TGAGAGGCTA
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.43, C:0.09, G:0.48, T:0.00
Consensus pattern (12 bp):
GAGGGAGACAGA
Found at i:24923377 original size:26 final size:27
Alignment explanation
Indices: 24923347--24923398 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
24923337 TTTATTGGTT
24923347 AAGAAAATA-AAAATGAAAA-AAAAAAG
1 AAGAAAA-AGAAAATGAAAACAAAAAAG
*
24923373 AAGAAAAAGGAAATGAAAACAAAAAA
1 AAGAAAAAGAAAATGAAAACAAAAAA
24923399 CGAGATTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 1 0.04
26 16 0.70
27 6 0.26
ACGTcount: A:0.79, C:0.02, G:0.13, T:0.06
Consensus pattern (27 bp):
AAGAAAAAGAAAATGAAAACAAAAAAG
Found at i:24928286 original size:36 final size:36
Alignment explanation
Indices: 24928239--24928313 Score: 150
Period size: 36 Copynumber: 2.1 Consensus size: 36
24928229 AGATCAGCAG
24928239 CAAAAGGATTGATGAAATCACTATCACCAATGTCAA
1 CAAAAGGATTGATGAAATCACTATCACCAATGTCAA
24928275 CAAAAGGATTGATGAAATCACTATCACCAATGTCAA
1 CAAAAGGATTGATGAAATCACTATCACCAATGTCAA
24928311 CAA
1 CAA
24928314 GATTTTGTCT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.45, C:0.20, G:0.13, T:0.21
Consensus pattern (36 bp):
CAAAAGGATTGATGAAATCACTATCACCAATGTCAA
Found at i:24943444 original size:28 final size:28
Alignment explanation
Indices: 24943405--24943473 Score: 75
Period size: 29 Copynumber: 2.4 Consensus size: 28
24943395 ATTAAAGTGT
* * *
24943405 AACAAAATTTTTAAATATGACGTATAAC
1 AACAATATTTTTAAACATGACATATAAC
* * *
24943433 AATAATATTTTTTCAACATGACATGTAAC
1 AACAATA-TTTTTAAACATGACATATAAC
24943462 AACAATATTTTT
1 AACAATATTTTT
24943474 TCAATATGGC
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
28 10 0.30
29 23 0.70
ACGTcount: A:0.45, C:0.12, G:0.06, T:0.38
Consensus pattern (28 bp):
AACAATATTTTTAAACATGACATATAAC
Found at i:24943453 original size:29 final size:29
Alignment explanation
Indices: 24943412--24943527 Score: 109
Period size: 29 Copynumber: 4.2 Consensus size: 29
24943402 TGTAACAAAA
* *
24943412 TTTTTAAATATGACGTATAACAATAATAT
1 TTTTTCAATATGACGTATAACAACAATAT
* * *
24943441 TTTTTCAACATGACATGTAACAACAATAT
1 TTTTTCAATATGACGTATAACAACAATAT
* * *
24943470 TTTTTCAATATGGCG--T-GCAAC-ATGT
1 TTTTTCAATATGACGTATAACAACAATAT
24943495 TTTTGT--ATATGACGTATAACAACAATAT
1 TTTT-TCAATATGACGTATAACAACAATAT
24943523 TTTTT
1 TTTTT
24943528 TTCAACATGA
Statistics
Matches: 69, Mismatches: 13, Indels: 12
0.73 0.14 0.13
Matches are distributed among these distances:
24 7 0.10
25 7 0.10
26 6 0.09
27 6 0.09
28 7 0.10
29 36 0.52
ACGTcount: A:0.36, C:0.12, G:0.10, T:0.41
Consensus pattern (29 bp):
TTTTTCAATATGACGTATAACAACAATAT
Found at i:24943635 original size:29 final size:30
Alignment explanation
Indices: 24943597--24943654 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
24943587 CATGGTGTGT
* *
24943597 AATATATTTTTGT-ATATGACGTGTAACAAC
1 AATATATTTTT-TAACACGACGTGTAACAAC
24943627 AATAT-TTTTTTAACACGACGTGTAACAA
1 AATATATTTTTTAACACGACGTGTAACAA
24943655 TATTTTTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 1 0.04
29 19 0.76
30 5 0.20
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (30 bp):
AATATATTTTTTAACACGACGTGTAACAAC
Found at i:24943650 original size:53 final size:53
Alignment explanation
Indices: 24943450--24943661 Score: 180
Period size: 54 Copynumber: 3.9 Consensus size: 53
24943440 TTTTTTCAAC
* * * * * * *
24943450 ATGACATGTAACAACAATATTTTTTCAATATGGCGTGCAACATGTTTTTGTAT
1 ATGACGTGTAACAACAATATTTTTTTAACATGACGTGTAATATATTTTTGTAT
* *
24943503 ATGACGTATAACAACAATATTTTTTTTCAACATGACGTGTAATA-ACTTTTTTTTAACT
1 ATGACGTGTAACAACAATA-TTTTTTT-AACATGACGTGTAATATA--TTTTTGT-A-T
* * * **
24943561 ATGATGTGT---AATAATTTTTTTTTAACCATGGTGTGTAATATATTTTTGTAT
1 ATGACGTGTAACAACAATATTTTTTTAA-CATGACGTGTAATATATTTTTGTAT
* *
24943612 ATGACGTGTAACAACAATATTTTTTTAACACGACGTGTAACAATATTTTT
1 ATGACGTGTAACAACAATATTTTTTTAACATGACGTGTAA-TATATTTTT
24943662 TAACCATGAC
Statistics
Matches: 124, Mismatches: 23, Indels: 23
0.73 0.14 0.14
Matches are distributed among these distances:
51 9 0.07
52 1 0.01
53 34 0.27
54 47 0.38
55 18 0.15
56 6 0.05
57 1 0.01
58 8 0.06
ACGTcount: A:0.33, C:0.11, G:0.13, T:0.43
Consensus pattern (53 bp):
ATGACGTGTAACAACAATATTTTTTTAACATGACGTGTAATATATTTTTGTAT
Found at i:24943660 original size:26 final size:26
Alignment explanation
Indices: 24943401--24943689 Score: 135
Period size: 27 Copynumber: 10.7 Consensus size: 26
24943391 AGGCATTAAA
* * *
24943401 GTGTAACAA-AATTTTTAAATATGAC
1 GTGTAACAATATTTTTTTAACATGAC
*
24943426 GTATAACAATAATATTTTTTCAACATGAC
1 GTGTAACAAT-AT-TTTTTT-AACATGAC
* * * *
24943455 ATGTAACAACAATATTTTTTCAATATGGC
1 GTGT---AACAATATTTTTTTAACATGAC
* * * *
24943484 GTGCAAC-ATGTTTTTGT-ATATGAC
1 GTGTAACAATATTTTTTTAACATGAC
*
24943508 GTATAACAACAATATTTTTTTTCAACATGAC
1 GTGT---AACAATA-TTTTTTT-AACATGAC
* *
24943539 GTGTAATAACT-TTTTTTTAACTATGAT
1 GTGTAACAA-TATTTTTTTAAC-ATGAC
* * **
24943566 GTGTAATAATTTTTTTTTAACCATGGT
1 GTGTAACAATATTTTTTTAA-CATGAC
* * *
24943593 GTGTAA-TATATTTTTGT-ATATGAC
1 GTGTAACAATATTTTTTTAACATGAC
*
24943617 GTGTAACAACAATATTTTTTTAACACGAC
1 GTGT---AACAATATTTTTTTAACATGAC
24943646 GTGTAACAATA-TTTTTTAACCATGAC
1 GTGTAACAATATTTTTTTAA-CATGAC
* *
24943672 ATGTAAC-ATGTTTTTTTA
1 GTGTAACAATATTTTTTTA
24943690 TATGGTATGT
Statistics
Matches: 202, Mismatches: 37, Indels: 49
0.70 0.13 0.17
Matches are distributed among these distances:
24 15 0.07
25 26 0.13
26 40 0.20
27 45 0.22
28 21 0.10
29 33 0.16
30 5 0.02
31 11 0.05
32 6 0.03
ACGTcount: A:0.34, C:0.11, G:0.12, T:0.43
Consensus pattern (26 bp):
GTGTAACAATATTTTTTTAACATGAC
Found at i:24943665 original size:79 final size:81
Alignment explanation
Indices: 24943534--24943737 Score: 197
Period size: 79 Copynumber: 2.6 Consensus size: 81
24943524 TTTTTTCAAC
* * * * * ***
24943534 ATGACGTGTAATAAC--T-TTTTTTTAACTATGATGTGTAATAATTTTTTTTTAACCATGGTGTG
1 ATGACGTGTAACAACAATATTTTTTTAACTACGACGTGTAACAATTATTTTTTAACCATGACATG
*
24943596 TAATATATTTTTGTAT
66 TAACATATTTTTGTAT
24943612 ATGACGTGTAACAACAATATTTTTTTAAC-ACGACGTGTAACAA-TATTTTTTAACCATGACATG
1 ATGACGTGTAACAACAATATTTTTTTAACTACGACGTGTAACAATTATTTTTTAACCATGACATG
* *
24943675 TAACATGTTTTTTTAT
66 TAACATATTTTTGTAT
*** * * *
24943691 ATGGTATGTAACAACAATATTCTTTTCAA-TATGGCGTGTAAC-ATTAT
1 ATGACGTGTAACAACAATATT-TTTTTAACTACGACGTGTAACAATTAT
24943738 ATGCACGACA
Statistics
Matches: 103, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
78 14 0.14
79 48 0.47
80 31 0.30
81 10 0.10
ACGTcount: A:0.32, C:0.11, G:0.13, T:0.44
Consensus pattern (81 bp):
ATGACGTGTAACAACAATATTTTTTTAACTACGACGTGTAACAATTATTTTTTAACCATGACATG
TAACATATTTTTGTAT
Found at i:24943685 original size:25 final size:25
Alignment explanation
Indices: 24943624--24943687 Score: 76
Period size: 26 Copynumber: 2.5 Consensus size: 25
24943614 GACGTGTAAC
*
24943624 AACAATATTTTTTTAACACGACGTGT
1 AACAATA-TTTTTTAACACGACATGT
*
24943650 AACAATATTTTTTAACCATGACATGT
1 AACAATATTTTTTAA-CACGACATGT
*
24943676 AAC-ATGTTTTTT
1 AACAATATTTTTT
24943688 TATATGGTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
25 16 0.47
26 18 0.53
ACGTcount: A:0.34, C:0.14, G:0.09, T:0.42
Consensus pattern (25 bp):
AACAATATTTTTTAACACGACATGT
Found at i:24943710 original size:109 final size:108
Alignment explanation
Indices: 24943494--24943701 Score: 266
Period size: 109 Copynumber: 2.0 Consensus size: 108
24943484 GTGCAACATG
* * * *
24943494 TTTTTGTATATGACGTATAACAACAATATTTTTTTTCAACATGACGTGTAATAACTTTTTTTTAA
1 TTTTTGTATATGACGTGTAACAACAATATTTTTTTTCAACACGACGTGTAACAACTATTTTTTAA
* ** * *
24943559 CTATGATGTGTAATAATTTTTTTTTAACCATGGTGTGTAATAT
66 CCATGACATGTAATAATGTTTTTTTAACCATGGTATGTAATAT
24943602 ATTTTTGTATATGACGTGTAACAACAATA-TTTTTTT-AACACGACGTGTAACAA-TATTTTTTA
1 -TTTTTGTATATGACGTGTAACAACAATATTTTTTTTCAACACGACGTGTAACAACTATTTTTTA
* *
24943664 ACCATGACATGTAA-CATGTTTTTTT-A-TATGGTATGTAA
65 ACCATGACATGTAATAATGTTTTTTTAACCATGGTATGTAA
24943702 CAACAATATT
Statistics
Matches: 88, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
103 10 0.11
104 1 0.01
105 9 0.10
106 19 0.22
107 15 0.17
108 7 0.08
109 27 0.31
ACGTcount: A:0.32, C:0.10, G:0.12, T:0.46
Consensus pattern (108 bp):
TTTTTGTATATGACGTGTAACAACAATATTTTTTTTCAACACGACGTGTAACAACTATTTTTTAA
CCATGACATGTAATAATGTTTTTTTAACCATGGTATGTAATAT
Found at i:24953415 original size:19 final size:19
Alignment explanation
Indices: 24953391--24953452 Score: 65
Period size: 19 Copynumber: 3.3 Consensus size: 19
24953381 TAAATTAATA
*
24953391 TTATATATCATTTTTATAT
1 TTATATATAATTTTTATAT
* **
24953410 TTATATAAAATTTAAAT-T
1 TTATATATAATTTTTATAT
24953428 TTA-ATATTAATTTTTATAT
1 TTATATA-TAATTTTTATAT
24953447 TTATAT
1 TTATAT
24953453 TTTATAATTA
Statistics
Matches: 33, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
17 3 0.09
18 11 0.33
19 17 0.52
20 2 0.06
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.60
Consensus pattern (19 bp):
TTATATATAATTTTTATAT
Found at i:24953437 original size:54 final size:53
Alignment explanation
Indices: 24953391--24953489 Score: 134
Period size: 50 Copynumber: 1.9 Consensus size: 53
24953381 TAAATTAATA
*
24953391 TTATATATCAT-TTTTATATTTAT-ATAAAATTTA-A-ATTTTAATATTAATTT
1 TTATAT-TCATATTTTATAATTATAATAAAATTTATATATTTTAATATTAATTT
*
24953441 TTATATTTATATTTTATAATTATGAATAAAATTTATATATTTTAATATT
1 TTATATTCATATTTTATAATTAT-AATAAAATTTATATATTTTAATATT
24953490 GTAATTTAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
49 3 0.07
50 17 0.40
52 10 0.24
53 1 0.02
54 11 0.26
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.58
Consensus pattern (53 bp):
TTATATTCATATTTTATAATTATAATAAAATTTATATATTTTAATATTAATTT
Found at i:24953452 original size:18 final size:18
Alignment explanation
Indices: 24953400--24953453 Score: 56
Period size: 18 Copynumber: 2.9 Consensus size: 18
24953390 ATTATATATC
24953400 ATTTTTATATTTATA-TA
1 ATTTTTATATTTATATTA
** *
24953417 AAATTTAAATTTTAATATTA
1 ATTTTTATA-TTT-ATATTA
24953437 ATTTTTATATTTATATT
1 ATTTTTATATTTATATT
24953454 TTATAATTAT
Statistics
Matches: 28, Mismatches: 6, Indels: 5
0.72 0.15 0.13
Matches are distributed among these distances:
17 6 0.21
18 8 0.29
19 6 0.21
20 8 0.29
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
ATTTTTATATTTATATTA
Found at i:24954222 original size:20 final size:20
Alignment explanation
Indices: 24954199--24954242 Score: 54
Period size: 23 Copynumber: 2.1 Consensus size: 20
24954189 AAACGGTTTA
24954199 ATTATT-TTATAATATAAAAT
1 ATTATTATTATAATA-AAAAT
24954219 ATTATTAAATTATAATAAAAAT
1 ATTATT--ATTATAATAAAAAT
24954241 AT
1 AT
24954243 GTTTGTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 6 0.29
22 7 0.33
23 8 0.38
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
ATTATTATTATAATAAAAAT
Found at i:24959364 original size:2 final size:2
Alignment explanation
Indices: 24959357--24959382 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
24959347 ACCTCTTTAT
24959357 TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC
24959383 CTGTTCCAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:24968429 original size:29 final size:29
Alignment explanation
Indices: 24968394--24968461 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 29
24968384 CAAAAGGCAA
24968394 AATATTTTTA-AAAATTTAAATAAAATTT
1 AATATTTTTATAAAATTTAAATAAAATTT
* * *
24968422 AAT-TATTTTATTATATTTAATTAAAATTT
1 AATAT-TTTTATAAAATTTAAATAAAATTT
*
24968451 TATATTTTTAT
1 AATATTTTTAT
24968462 TTTAAATTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
27 1 0.03
28 8 0.24
29 23 0.70
30 1 0.03
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (29 bp):
AATATTTTTATAAAATTTAAATAAAATTT
Found at i:24968462 original size:29 final size:29
Alignment explanation
Indices: 24968407--24968476 Score: 79
Period size: 29 Copynumber: 2.4 Consensus size: 29
24968397 ATTTTTAAAA
24968407 ATTTAAATAAAATTTAATTATTTTATTAT
1 ATTTAAATAAAATTTAATTATTTTATTAT
* * *
24968436 ATTTAATTAAAATTTTA-TATTTTTATTTT
1 ATTTAAATAAAATTTAATTA-TTTTATTAT
*
24968465 AAATTAAATAAA
1 -ATTTAAATAAA
24968477 TTTTTATAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
28 2 0.06
29 23 0.68
30 9 0.26
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (29 bp):
ATTTAAATAAAATTTAATTATTTTATTAT
Found at i:24973164 original size:33 final size:33
Alignment explanation
Indices: 24973127--24973198 Score: 99
Period size: 33 Copynumber: 2.2 Consensus size: 33
24973117 ATCTCCTTCT
* *
24973127 CCACCACCACCATATGAGTATAAATCTCCACCA
1 CCACCACCACCATATGAGTACAAATCCCCACCA
* * *
24973160 CCACCACCACCTTATGAGTACAAGTCCCCACCT
1 CCACCACCACCATATGAGTACAAATCCCCACCA
24973193 CCACCA
1 CCACCA
24973199 TCTCCATCAC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.32, C:0.44, G:0.07, T:0.17
Consensus pattern (33 bp):
CCACCACCACCATATGAGTACAAATCCCCACCA
Found at i:24973236 original size:81 final size:81
Alignment explanation
Indices: 24973085--24973246 Score: 198
Period size: 81 Copynumber: 2.0 Consensus size: 81
24973075 ATCACCTCCT
* * * * ** * *
24973085 CCACCTTATGAGTACAAGTCACCTCCACCGCCATCTCCTTCTCCACCACCACCATATGAGTATAA
1 CCACCTTATGAGTACAAGTCACCACCACCACCATCTCCATCACCACCACCACCATACCACTACAA
24973150 ATCTCCACCACCACCA
66 ATCTCCACCACCACCA
* * * * *
24973166 CCACCTTATGAGTACAAGTCCCCACCTCCACCATCTCCATCACCACCTCCTCCATACCACTACCA
1 CCACCTTATGAGTACAAGTCACCACCACCACCATCTCCATCACCACCACCACCATACCACTACAA
*
24973231 CTCTCCACCACCACCA
66 ATCTCCACCACCACCA
24973247 AAGCATGAAG
Statistics
Matches: 67, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
81 67 1.00
ACGTcount: A:0.27, C:0.48, G:0.06, T:0.20
Consensus pattern (81 bp):
CCACCTTATGAGTACAAGTCACCACCACCACCATCTCCATCACCACCACCACCATACCACTACAA
ATCTCCACCACCACCA
Found at i:24973302 original size:96 final size:96
Alignment explanation
Indices: 24973178--24973486 Score: 474
Period size: 96 Copynumber: 3.2 Consensus size: 96
24973168 ACCTTATGAG
* * * * * *
24973178 TACAAGTCCCCACCTCCACCATCTCCATCACCACCTCCTCCATACCACTACCACTCTCCACCACC
1 TACAAGTCTCCACCACCTCCATCTCCATCACCACCTCCTCCATACTACTACAAGTCTCCACCACC
* *
24973243 ACCAAAGCATGAAGAAAAACCCCCGTACTAC
66 ACCAAAACATGAAGAAAAACCCCCATACTAC
* * * * *
24973274 TACAAATCTCCACCACCTCCATCCCCATCCCCACCTCCTCCATACTATTACGAGTCTCCACCACC
1 TACAAGTCTCCACCACCTCCATCTCCATCACCACCTCCTCCATACTACTACAAGTCTCCACCACC
*
24973339 ACCAAAACATGAAGAAAAACCACCATACTAC
66 ACCAAAACATGAAGAAAAACCCCCATACTAC
*
24973370 TACAAGTCTCCTCCACCTCCATCTCCATCACCACCTCCTCCATACTACTACAAGTCTCCACCACC
1 TACAAGTCTCCACCACCTCCATCTCCATCACCACCTCCTCCATACTACTACAAGTCTCCACCACC
24973435 ACCAAAACATGAAGAAAAACCCCCATACTAC
66 ACCAAAACATGAAGAAAAACCCCCATACTAC
*
24973466 TACAAGTCTCCTCCACCTCCA
1 TACAAGTCTCCACCACCTCCA
24973487 GTAAAGCCTC
Statistics
Matches: 193, Mismatches: 20, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
96 193 1.00
ACGTcount: A:0.32, C:0.45, G:0.05, T:0.18
Consensus pattern (96 bp):
TACAAGTCTCCACCACCTCCATCTCCATCACCACCTCCTCCATACTACTACAAGTCTCCACCACC
ACCAAAACATGAAGAAAAACCCCCATACTAC
Found at i:24973320 original size:48 final size:48
Alignment explanation
Indices: 24973178--24973629 Score: 187
Period size: 48 Copynumber: 9.4 Consensus size: 48
24973168 ACCTTATGAG
* * * * *
24973178 TACAAGTCCCCACCTCCACCATCTCCATCACCACCTCCTCCATACCAC
1 TACAAGTCTCCACCACCTCCATCACCATCACCACCTCCTCCATACTAC
* * * * * * ** *** * *
24973226 TACCACTCTCCACCACCACCA-AAGCATGAAGAAAAACCCCCGTACTAC
1 TACAAGTCTCCACCACCTCCATCACCAT-CACCACCTCCTCCATACTAC
* * * *
24973274 TACAAATCTCCACCACCTCCATCCCCATCCCCACCTCCTCCATACTAT
1 TACAAGTCTCCACCACCTCCATCACCATCACCACCTCCTCCATACTAC
* * * * * ** *** *
24973322 TACGAGTCTCCACCACCACCA-AAACATGAAGAAAAACCACCATACTAC
1 TACAAGTCTCCACCACCTCCATCACCAT-CACCACCTCCTCCATACTAC
* *
24973370 TACAAGTCTCCTCCACCTCCATCTCCATCACCACCTCCTCCATACTAC
1 TACAAGTCTCCACCACCTCCATCACCATCACCACCTCCTCCATACTAC
* * * * ** *** *
24973418 TACAAGTCTCCACCACCACCA-AAACATGAAGAAAAACCCCCATACTAC
1 TACAAGTCTCCACCACCTCCATCACCAT-CACCACCTCCTCCATACTAC
* * **** * *
24973466 TACAAGTCTCCTCCACCTCCAGTAAAGCC-T--CCACCAAAACCATATTAT
1 TACAAGTCTCCACCACCTCCA-T-CA-CCATCACCACCTCCTCCATACTAC
* * * * * * * *
24973514 TATAAATCTCCTCCACCACCATCTCCTTCACCACCTCCACCTTACTAC
1 TACAAGTCTCCACCACCTCCATCACCATCACCACCTCCTCCATACTAC
* * * * * ** *
24973562 TATAAGTCTCCACCACCACCTTCACCATCTCCTCGACCTCCTTACTAC
1 TACAAGTCTCCACCACCTCCATCACCATCACCACCTCCTCCATACTAC
24973610 TACAAGTCTCCACCACCTCC
1 TACAAGTCTCCACCACCTCC
24973630 TCCACATTAC
Statistics
Matches: 285, Mismatches: 107, Indels: 24
0.69 0.26 0.06
Matches are distributed among these distances:
45 2 0.01
46 1 0.00
47 10 0.04
48 262 0.92
49 6 0.02
51 3 0.01
52 1 0.00
ACGTcount: A:0.31, C:0.45, G:0.04, T:0.20
Consensus pattern (48 bp):
TACAAGTCTCCACCACCTCCATCACCATCACCACCTCCTCCATACTAC
Found at i:24973461 original size:144 final size:143
Alignment explanation
Indices: 24973313--24973581 Score: 328
Period size: 144 Copynumber: 1.9 Consensus size: 143
24973303 CCCACCTCCT
* * * *
24973313 CCATACTATTACGAGTCTCCACCACCACCA-AAA-CATGAAGAAAAACCACCA-TACTACTACAA
1 CCATACTACTACAAGTCTCCACCACCACCAGAAAGCATCAACAAAAACCA-CATTACTA-TA-AA
* *
24973375 GTCTCCTCCACCTCCATCTCCATCACCACCTCCTCCATACTACTACAAGTCTCCACCACCACCAA
63 -TCTCCTCCACCACCATCTCCATCACCACCTCCACCATACTACTACAAGTCTCCACCACCACCAA
24973440 AACATGAAGAAAAACCC
127 AACATGAAGAAAAACCC
* * * * * * *
24973457 CCATACTACTACAAGTCTCCTCCACCTCCAGTAAAGCCTCCACCAAAACCATATTATTATAAATC
1 CCATACTACTACAAGTCTCCACCACCACCAG-AAAGCATCAACAAAAACCACATTACTATAAATC
* * *
24973522 TCCTCCACCACCATCTCCTTCACCACCTCCACCTTACTACTATAAGTCTCCACCACCACC
65 TCCTCCACCACCATCTCCATCACCACCTCCACCATACTACTACAAGTCTCCACCACCACC
24973582 TTCACCATCT
Statistics
Matches: 105, Mismatches: 16, Indels: 8
0.81 0.12 0.06
Matches are distributed among these distances:
144 83 0.79
145 2 0.02
146 6 0.06
147 14 0.13
ACGTcount: A:0.33, C:0.42, G:0.04, T:0.20
Consensus pattern (143 bp):
CCATACTACTACAAGTCTCCACCACCACCAGAAAGCATCAACAAAAACCACATTACTATAAATCT
CCTCCACCACCATCTCCATCACCACCTCCACCATACTACTACAAGTCTCCACCACCACCAAAACA
TGAAGAAAAACCC
Found at i:24973539 original size:15 final size:15
Alignment explanation
Indices: 24973519--24973548 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
24973509 ATTATTATAA
24973519 ATCTCCTCCACCACC
1 ATCTCCTCCACCACC
*
24973534 ATCTCCTTCACCACC
1 ATCTCCTCCACCACC
24973549 TCCACCTTAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.57, G:0.00, T:0.23
Consensus pattern (15 bp):
ATCTCCTCCACCACC
Found at i:24973562 original size:192 final size:191
Alignment explanation
Indices: 24973158--24973626 Score: 492
Period size: 192 Copynumber: 2.4 Consensus size: 191
24973148 AAATCTCCAC
* * *
24973158 CACCACCACCACCTTA-TGAGTACAAGTCCCCACCTCCACCATCTCCATCACCACCTCCTCCATA
1 CACCACCACCACCTTACT-ACTACAAGTCTCCACCACCACCATCTCCATCACCACCTCCTCCATA
* * * * *
24973222 CCACTACCACTCTCCACCACCACCAAAGCATGAAGAAAAACCCCCGTACTACTACAAATCTCCAC
65 CTACTACAAGTCTCCACCACCACCAAAACATGAAGAAAAACCCCCATACTACTACAAATCTCCAC
** * **** * *
24973287 CACCTCCATCCCCATCCCCACCTCCTCCATACTATTACGAGTCTCCACCACCACCAAAACATG
130 CACCTCCAT-CAAAGCCCCACCAAAACCATACTATTACAAATCTCCACCACCACCAAAACATG
* ** ** * * *
24973350 AAGAAAAACCACCATACTACTACAAGTCTCCTCCACCTCCATCTCCATCACCACCTCCTCCATAC
1 CACCACCACCACCTTACTACTACAAGTCTCCACCACCACCATCTCCATCACCACCTCCTCCATAC
* *
24973415 TACTACAAGTCTCCACCACCACCAAAACATGAAGAAAAACCCCCATACTACTACAAGTCTCCTCC
66 TACTACAAGTCTCCACCACCACCAAAACATGAAGAAAAACCCCCATACTACTACAAATCTCCACC
* * * *** * *
24973480 ACCTCCAGT-AAAGCCTCCACCAAAACCATATTATTATAAATCTCCTCCACCACCATCTCCTT
131 ACCTCCA-TCAAAGCC-CCACCAAAACCATACTATTACAAATCTCCACCACCACCAAAACATG
* * * * * * ** *
24973542 CACCACCTCCACCTTACTACTATAAGTCTCCACCACCACCTTCACCATCTCCTCGACCTCCTTAC
1 CACCACCACCACCTTACTACTACAAGTCTCCACCACCACCATCTCCATCACCACCTCCTCCATAC
24973607 TACTACAAGTCTCCACCACC
66 TACTACAAGTCTCCACCACC
24973627 TCCTCCACAT
Statistics
Matches: 222, Mismatches: 52, Indels: 6
0.79 0.19 0.02
Matches are distributed among these distances:
191 3 0.01
192 217 0.98
193 2 0.01
ACGTcount: A:0.31, C:0.45, G:0.04, T:0.20
Consensus pattern (191 bp):
CACCACCACCACCTTACTACTACAAGTCTCCACCACCACCATCTCCATCACCACCTCCTCCATAC
TACTACAAGTCTCCACCACCACCAAAACATGAAGAAAAACCCCCATACTACTACAAATCTCCACC
ACCTCCATCAAAGCCCCACCAAAACCATACTATTACAAATCTCCACCACCACCAAAACATG
Found at i:24973630 original size:27 final size:27
Alignment explanation
Indices: 24973544--24973626 Score: 79
Period size: 27 Copynumber: 3.3 Consensus size: 27
24973534 ATCTCCTTCA
* *
24973544 CCACCTCCACCTTACTACTATAAGTCT
1 CCACCACCACCTTACTACTACAAGTCT
24973571 CCACCACCACCTT-C-AC--C-A-TCT
1 CCACCACCACCTTACTACTACAAGTCT
* * *
24973592 CCTCGACCTCCTTACTACTACAAGTCT
1 CCACCACCACCTTACTACTACAAGTCT
24973619 CCACCACC
1 CCACCACC
24973627 TCCTCCACAT
Statistics
Matches: 43, Mismatches: 7, Indels: 12
0.69 0.11 0.19
Matches are distributed among these distances:
21 13 0.30
22 2 0.05
23 2 0.05
25 3 0.07
26 2 0.05
27 21 0.49
ACGTcount: A:0.24, C:0.48, G:0.04, T:0.24
Consensus pattern (27 bp):
CCACCACCACCTTACTACTACAAGTCT
Found at i:24973656 original size:48 final size:48
Alignment explanation
Indices: 24973550--24973677 Score: 145
Period size: 48 Copynumber: 2.7 Consensus size: 48
24973540 TTCACCACCT
*
24973550 CCACCTTACTACTATAAGTCTCCACCACCACCTTCACCATCTCCTCGA
1 CCACCTTACTACTATAAGTCTCCACCACCACCTCCACCATCTCCTCGA
* * *
24973598 CCTCCTTACTACTACAAGTCTCCACCACCTCCTCCA-CAT-TACGTCTC-A
1 CCACCTTACTACTATAAGTCTCCACCACCACCTCCACCATCT-C--CTCGA
* * *
24973646 CCACCATACTATTATAAATCTCCACCACCACC
1 CCACCTTACTACTATAAGTCTCCACCACCACC
24973678 AGCTAAATCT
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
46 1 0.01
47 4 0.06
48 59 0.88
49 3 0.04
ACGTcount: A:0.27, C:0.45, G:0.03, T:0.25
Consensus pattern (48 bp):
CCACCTTACTACTATAAGTCTCCACCACCACCTCCACCATCTCCTCGA
Found at i:24975133 original size:72 final size:71
Alignment explanation
Indices: 24975057--24975311 Score: 191
Period size: 72 Copynumber: 3.5 Consensus size: 71
24975047 CACCTCCTCC
* *
24975057 ACCACCAACATACGT-CTACAAGTCACCACCACCTCCATCCCACCCATACAAGCCACCAACTGAG
1 ACCACCAACATAC-TACTACAAATCACCACCACCACCATCCCACCCATACAAGCCACCAACTGA-
24975121 CCATACAA
64 CCATACAA
* * * * * *
24975129 ACCACCACCATACTACTACAAATCTCCACCTCCACCATCACCCTCCTACATCTATAAGTCACC-A
1 ACCACCAACATACTACTACAAATCACCACCACCACCAT--CCCACC--CA--TACAAGCCACCAA
** *
24975193 C---CCCCACCA
60 CTGACCATACAA
* * * * *
24975202 ACC-CCCACTTACGT-TTACAAATCACCACCACCTCCATCTCACCCATACAAGCCACCAACTGAA
1 ACCACCAACATAC-TACTACAAATCACCACCACCACCATCCCACCCATACAAGCCACCAACTG-A
24975265 CCATACAA
64 CCATACAA
* * * *
24975273 ACCACCACCATACTACTACAAGTCCCCACCTCCACCATC
1 ACCACCAACATACTACTACAAATCACCACCACCACCATC
24975312 ACCCACCTAC
Statistics
Matches: 135, Mismatches: 33, Indels: 30
0.68 0.17 0.15
Matches are distributed among these distances:
66 9 0.07
67 2 0.01
68 2 0.01
70 4 0.03
71 10 0.07
72 81 0.60
73 9 0.07
74 5 0.04
76 2 0.01
77 2 0.01
78 9 0.07
ACGTcount: A:0.34, C:0.47, G:0.04, T:0.16
Consensus pattern (71 bp):
ACCACCAACATACTACTACAAATCACCACCACCACCATCCCACCCATACAAGCCACCAACTGACC
ATACAA
Found at i:24975227 original size:144 final size:144
Alignment explanation
Indices: 24975034--24975338 Score: 468
Period size: 144 Copynumber: 2.1 Consensus size: 144
24975024 ACCCGTTTAT
* * *
24975034 ATCTATAAATCACCACCTCCTCCACCACCAACATACGTCTACAAGTCACCACCACCTCCATCCCA
1 ATCTATAAATCACCACCCCCACCACCACCAACATACGTCTACAAATCACCACCACCTCCATCCCA
* *
24975099 CCCATACAAGCCACCAACTGAGCCATACAAACCACCACCATACTACTACAAATCTCCACCTCCAC
66 CCCATACAAGCCACCAACTGAACCATACAAACCACCACCATACTACTACAAATCCCCACCTCCAC
*
24975164 CATCACCCTCCTAC
131 CATCACCCACCTAC
* * * * *
24975178 ATCTATAAGTCACCACCCCCACCAACC-CCCACTTACGTTTACAAATCACCACCACCTCCATCTC
1 ATCTATAAATCACCACCCCCACC-ACCACCAACATACGTCTACAAATCACCACCACCTCCATCCC
*
24975242 ACCCATACAAGCCACCAACTGAACCATACAAACCACCACCATACTACTACAAGTCCCCACCTCCA
65 ACCCATACAAGCCACCAACTGAACCATACAAACCACCACCATACTACTACAAATCCCCACCTCCA
24975307 CCATCACCCACCTAC
130 CCATCACCCACCTAC
* *
24975322 GTCTACAAATCACCACC
1 ATCTATAAATCACCACC
24975339 ACCTCCATCT
Statistics
Matches: 145, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
144 142 0.98
145 3 0.02
ACGTcount: A:0.33, C:0.47, G:0.04, T:0.16
Consensus pattern (144 bp):
ATCTATAAATCACCACCCCCACCACCACCAACATACGTCTACAAATCACCACCACCTCCATCCCA
CCCATACAAGCCACCAACTGAACCATACAAACCACCACCATACTACTACAAATCCCCACCTCCAC
CATCACCCACCTAC
Found at i:24975248 original size:108 final size:108
Alignment explanation
Indices: 24975184--24975446 Score: 382
Period size: 108 Copynumber: 2.4 Consensus size: 108
24975174 CTACATCTAT
* * *
24975184 AAGTCACCACCCCCACCAACCCCCACTTACGTTTACAAATCACCACCACCTCCATCTCACCCATA
1 AAGTCACCACCCCCACCAACACCCACCTACGTCTACAAATCACCACCACCTCCATCTCACCCATA
* *
24975249 CAAGCCACCAACTGAACCATACAAACCACCACCATACTACTAC
66 CAAGCCACAAACTCAACCATACAAACCACCACCATACTACTAC
* * *
24975292 AAGTCCCCACCTCCACCATCACCCACCTACGTCTACAAATCACCACCACCTCCATCTCACCCATA
1 AAGTCACCACCCCCACCAACACCCACCTACGTCTACAAATCACCACCACCTCCATCTCACCCATA
* * *
24975357 CAAGCCACCAACTGAGCCATACAAACCACCACCATACTACTAC
66 CAAGCCACAAACTCAACCATACAAACCACCACCATACTACTAC
* * * * *
24975400 AAATCTCCACCTCCACCATCACCCACCTACGTCTACAAGTCACCACC
1 AAGTCACCACCCCCACCAACACCCACCTACGTCTACAAATCACCACC
24975447 CCCACCAACC
Statistics
Matches: 145, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
108 145 1.00
ACGTcount: A:0.33, C:0.47, G:0.04, T:0.15
Consensus pattern (108 bp):
AAGTCACCACCCCCACCAACACCCACCTACGTCTACAAATCACCACCACCTCCATCTCACCCATA
CAAGCCACAAACTCAACCATACAAACCACCACCATACTACTAC
Found at i:24975392 original size:144 final size:143
Alignment explanation
Indices: 24975100--24975537 Score: 412
Period size: 144 Copynumber: 3.0 Consensus size: 143
24975090 TCCATCCCAC
* * *
24975100 CCATACAAGCCACCAACTGAGCCATACAAACCACCACCATACTACTACAAATCTCCACCTCCACC
1 CCATACAAGCCACCAACTGAACCATACAAACCACCACCATACTACTACAAGTCACCACCTCCACC
* * * * * * * ** * *
24975165 ATCACCCTCCTACATCTATAAGTCACCACCCCCACCAAC-C-CCCACTTAC--GTTTA-CAAATC
66 ATCACCCACCTACGTCTACAAATCACCACCACCTCCATCTCACCCA--TACAAG-CCACCAACTG
* **
24975225 A-CCACCACCTCCATCTCA
128 AGCCAACA-AACCA-C-CA
*
24975243 CCCATACAAGCCACCAACTGAACCATACAAACCACCACCATACTACTACAAGTCCCCACCTCCAC
1 -CCATACAAGCCACCAACTGAACCATACAAACCACCACCATACTACTACAAGTCACCACCTCCAC
24975308 CATCACCCACCTACGTCTACAAATCACCACCACCTCCATCTCACCCATACAAGCCACCAACTGAG
65 CATCACCCACCTACGTCTACAAATCACCACCACCTCCATCTCACCCATACAAGCCACCAACTGAG
24975373 CCATACAAACCACCA
130 CCA-ACAAACCACCA
* * * ** * * * *
24975388 CCATACTA-CTACAAATCTCCACC-TCCACCATCACCCACC-TACGT-CTACAAGTCACCACCCC
1 CCATACAAGCCACCAA-CTGAACCATACA-AACCA-CCACCATAC-TACTACAAGTCACCACCTC
* *
24975449 CACCAAC-CCCTACTTACGTCTACAAATCACCACCACCTCCATCTCACCCATACAAGCCACCAAC
62 CACCATCACCC-ACCTACGTCTACAAATCACCACCACCTCCATCTCACCCATACAAGCCACCAAC
24975513 TGAGCCACACAAACCACCA
126 TGAGCCA-ACAAACCACCA
24975532 CCATAC
1 CCATAC
24975538 TACTACAAGT
Statistics
Matches: 252, Mismatches: 30, Indels: 24
0.82 0.10 0.08
Matches are distributed among these distances:
143 11 0.04
144 212 0.84
145 10 0.04
146 11 0.04
147 6 0.02
148 2 0.01
ACGTcount: A:0.34, C:0.47, G:0.04, T:0.15
Consensus pattern (143 bp):
CCATACAAGCCACCAACTGAACCATACAAACCACCACCATACTACTACAAGTCACCACCTCCACC
ATCACCCACCTACGTCTACAAATCACCACCACCTCCATCTCACCCATACAAGCCACCAACTGAGC
CAACAAACCACCA
Found at i:24975436 original size:36 final size:36
Alignment explanation
Indices: 24975396--24975491 Score: 113
Period size: 36 Copynumber: 2.7 Consensus size: 36
24975386 CACCATACTA
* *
24975396 CTACAAATCTCCACCTCCACCATCACCC-ACCTACGT
1 CTACAAATCACCACCACCACCATC-CCCTACCTACGT
* * * *
24975432 CTACAAGTCACCACCCCCACCAACCCCTACTTACGT
1 CTACAAATCACCACCACCACCATCCCCTACCTACGT
*
24975468 CTACAAATCACCACCACCTCCATC
1 CTACAAATCACCACCACCACCATC
24975492 TCACCCATAC
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
35 3 0.06
36 47 0.94
ACGTcount: A:0.29, C:0.50, G:0.03, T:0.18
Consensus pattern (36 bp):
CTACAAATCACCACCACCACCATCCCCTACCTACGT
Found at i:24975491 original size:252 final size:252
Alignment explanation
Indices: 24975043--24975698 Score: 1078
Period size: 252 Copynumber: 2.6 Consensus size: 252
24975033 TATCTATAAA
* * * *
24975043 TCACCACCTCCTCCACCACCAACATACGTCTACAAGTCACCACCACCTCCATCCCACCCATACAA
1 TCACCACCTCCACCATCACCAACATACGTCTACAAATCACCACCACCTCCATCTCACCCATACAA
*
24975108 GCCACCAACTGAGCCATACAAACCACCACCATACTACTACAAATCTCCACCTCCACCATCACCCT
66 GCCACCAACTGAGCCATACAAACCACCACCATACTACTACAAATCTCCACCTCCACCATCACCCA
* *
24975173 CCTACATCTATAAGTCACCACCCCCACCAACCCCCACTTACGTTTACAAATCACCACCACCTCCA
131 CCTACATCTACAAGTCACCACCCCCACCAACCCCCACTTACGTCTACAAATCACCACCACCTCCA
*
24975238 TCTCACCCATACAAGCCACCAACTGAACCATACAAACCACCACCATACTACTACAAG
196 TCTCACCCATACAAGCCACCAACTGAACCACACAAACCACCACCATACTACTACAAG
* * *
24975295 TCCCCACCTCCACCATCACCCACCTACGTCTACAAATCACCACCACCTCCATCTCACCCATACAA
1 TCACCACCTCCACCATCACCAACATACGTCTACAAATCACCACCACCTCCATCTCACCCATACAA
24975360 GCCACCAACTGAGCCATACAAACCACCACCATACTACTACAAATCTCCACCTCCACCATCACCCA
66 GCCACCAACTGAGCCATACAAACCACCACCATACTACTACAAATCTCCACCTCCACCATCACCCA
* *
24975425 CCTACGTCTACAAGTCACCACCCCCACCAACCCCTACTTACGTCTACAAATCACCACCACCTCCA
131 CCTACATCTACAAGTCACCACCCCCACCAACCCCCACTTACGTCTACAAATCACCACCACCTCCA
*
24975490 TCTCACCCATACAAGCCACCAACTGAGCCACACAAACCACCACCATACTACTACAAG
196 TCTCACCCATACAAGCCACCAACTGAACCACACAAACCACCACCATACTACTACAAG
* * * *
24975547 TCACCACCTCCACCATCGCCTACTTACATCTACAAATCACCACCACCTCCATCTCACCCATACAA
1 TCACCACCTCCACCATCACCAACATACGTCTACAAATCACCACCACCTCCATCTCACCCATACAA
* * * * * *
24975612 GCCACCAACTGAGCCACACAAGCCACCACCATACTACTACAAGTCACCACCTCCACCATCGCCTA
66 GCCACCAACTGAGCCATACAAACCACCACCATACTACTACAAATCTCCACCTCCACCATCACCCA
* *
24975677 CTTACATCTACAAATCACCACC
131 CCTACATCTACAAGTCACCACC
24975699 ACCTCCACCA
Statistics
Matches: 376, Mismatches: 28, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
252 376 1.00
ACGTcount: A:0.33, C:0.47, G:0.04, T:0.16
Consensus pattern (252 bp):
TCACCACCTCCACCATCACCAACATACGTCTACAAATCACCACCACCTCCATCTCACCCATACAA
GCCACCAACTGAGCCATACAAACCACCACCATACTACTACAAATCTCCACCTCCACCATCACCCA
CCTACATCTACAAGTCACCACCCCCACCAACCCCCACTTACGTCTACAAATCACCACCACCTCCA
TCTCACCCATACAAGCCACCAACTGAACCACACAAACCACCACCATACTACTACAAG
Found at i:24975500 original size:108 final size:108
Alignment explanation
Indices: 24975432--24975705 Score: 503
Period size: 108 Copynumber: 2.5 Consensus size: 108
24975422 CCACCTACGT
* * * *
24975432 CTACAAGTCACCACCCCCACCAACCCCTACTTACGTCTACAAATCACCACCACCTCCATCTCACC
1 CTACAAGTCACCACCTCCACCATCGCCTACTTACATCTACAAATCACCACCACCTCCATCTCACC
24975497 CATACAAGCCACCAACTGAGCCACACAAACCACCACCATACTA
66 CATACAAGCCACCAACTGAGCCACACAAACCACCACCATACTA
24975540 CTACAAGTCACCACCTCCACCATCGCCTACTTACATCTACAAATCACCACCACCTCCATCTCACC
1 CTACAAGTCACCACCTCCACCATCGCCTACTTACATCTACAAATCACCACCACCTCCATCTCACC
*
24975605 CATACAAGCCACCAACTGAGCCACACAAGCCACCACCATACTA
66 CATACAAGCCACCAACTGAGCCACACAAACCACCACCATACTA
24975648 CTACAAGTCACCACCTCCACCATCGCCTACTTACATCTACAAATCACCACCACCTCCA
1 CTACAAGTCACCACCTCCACCATCGCCTACTTACATCTACAAATCACCACCACCTCCA
24975706 CCATACTACT
Statistics
Matches: 161, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
108 161 1.00
ACGTcount: A:0.33, C:0.46, G:0.05, T:0.16
Consensus pattern (108 bp):
CTACAAGTCACCACCTCCACCATCGCCTACTTACATCTACAAATCACCACCACCTCCATCTCACC
CATACAAGCCACCAACTGAGCCACACAAACCACCACCATACTA
Found at i:24975554 original size:144 final size:144
Alignment explanation
Indices: 24975288--24975590 Score: 482
Period size: 144 Copynumber: 2.1 Consensus size: 144
24975278 CACCATACTA
* * *
24975288 CTACAAGTCCCCACCTCCACCATCACCCACCTACGTCTACAAATCACCACCACCTCCATCTCACC
1 CTACAAGTCACCACCCCCACCAACACCCACCTACGTCTACAAATCACCACCACCTCCATCTCACC
* *
24975353 CATACAAGCCACCAACTGAGCCATACAAACCACCACCATACTACTACAAATCTCCACCTCCACCA
66 CATACAAGCCACCAACTGAGCCACACAAACCACCACCATACTACTACAAATCACCACCTCCACCA
*
24975418 TCACCCACCTACGT
131 TCACCCACCTACAT
*
24975432 CTACAAGTCACCACCCCCACCAAC-CCCTACTTACGTCTACAAATCACCACCACCTCCATCTCAC
1 CTACAAGTCACCACCCCCACCAACACCC-ACCTACGTCTACAAATCACCACCACCTCCATCTCAC
*
24975496 CCATACAAGCCACCAACTGAGCCACACAAACCACCACCATACTACTACAAGTCACCACCTCCACC
65 CCATACAAGCCACCAACTGAGCCACACAAACCACCACCATACTACTACAAATCACCACCTCCACC
* * *
24975561 ATCGCCTACTTACAT
130 ATCACCCACCTACAT
*
24975576 CTACAAATCACCACC
1 CTACAAGTCACCACC
24975591 ACCTCCATCT
Statistics
Matches: 146, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
143 3 0.02
144 143 0.98
ACGTcount: A:0.33, C:0.47, G:0.04, T:0.16
Consensus pattern (144 bp):
CTACAAGTCACCACCCCCACCAACACCCACCTACGTCTACAAATCACCACCACCTCCATCTCACC
CATACAAGCCACCAACTGAGCCACACAAACCACCACCATACTACTACAAATCACCACCTCCACCA
TCACCCACCTACAT
Found at i:24975749 original size:48 final size:48
Alignment explanation
Indices: 24975697--24976499 Score: 473
Period size: 48 Copynumber: 16.7 Consensus size: 48
24975687 CAAATCACCA
* * * *
24975697 CCACCTCCACCATACTACTATAAATCCCCACCACCTCCATCTCCATCC
1 CCACCTCCACCATACTACTACAAATCTCCACCACCACCATCTCCATCT
* * * * * * * ***
24975745 CCACCTCCTCCATACTATTACGAGTCTCCACCACCACCAAAACACGAAGAA
1 CCACCTCCACCATACTACTACAAATCTCCACCACCACC--ATCTC-CATCT
** * * * *
24975796 AAACCT---CCATACTACTACAAGTCTCCTCCACCTCCATCTCCATCC
1 CCACCTCCACCATACTACTACAAATCTCCACCACCACCATCTCCATCT
* * *
24975841 CCACCTCCTCCATACTACTACAAGTCTCCACCACCTCC-TC-CACAT-T
1 CCACCTCCACCATACTACTACAAATCTCCACCACCACCATCTC-CATCT
** * * * *
24975887 ACGTCTCACCACCATACTATTATAAATCTCCACCACCACCATCGCCATCT
1 -CCAC-CTCCACCATACTACTACAAATCTCCACCACCACCATCTCCATCT
* * * * *
24975937 CCTCTTCCACCATACTACTACAAATCCCCGCCACCACCA-GTCCATTCT
1 CCACCTCCACCATACTACTACAAATCTCCACCACCACCATCTCCA-TCT
* * *
24975985 CCACCACCACCATACTATTACAAATCTCCACCACCACCATCGCCATCT
1 CCACCTCCACCATACTACTACAAATCTCCACCACCACCATCTCCATCT
* * * * * * * *
24976033 CCTCTTCCACCATACTACTACAAATCACCTCCACCTCCTTCACCCTCT
1 CCACCTCCACCATACTACTACAAATCTCCACCACCACCATCTCCATCT
* * * * *
24976081 CCCACAC-CC-CCATATTATTACAAGTCTCCACCACCACCA-GTCCATTCC
1 -CCAC-CTCCACCATACTACTACAAATCTCCACCACCACCATCTCCA-TCT
* * * * * **
24976129 CCTCCACCACCATACTACTACAAATCACCACCACCTCCA-ATAAAGTCT
1 CCACCTCCACCATACTACTACAAATCTCCACCACCACCATCTCCA-TCT
* * * * * * * *
24976177 CCAGCACCAGTC-TACCACTACAACTCTCCTCCTCCACCATCACCATCT
1 CCACCTCCA-CCATACTACTACAAATCTCCACCACCACCATCTCCATCT
* * * * * * *
24976225 CCTCATCCTCCATATTACTACAAATCCCCACCACCTCCATCTCCATCA
1 CCACCTCCACCATACTACTACAAATCTCCACCACCACCATCTCCATCT
* * * * * * *
24976273 CCA-TTACCCCCATATTACTACAAATCTCCTCCTCCACCGTCGCCATCT
1 CCACCT-CCACCATACTACTACAAATCTCCACCACCACCATCTCCATCT
* * * * * *
24976321 CCTCTTCCACCCTATTACTACAAATCCCCACCACCACCA-GTCCACTCT
1 CCACCTCCACCATACTACTACAAATCTCCACCACCACCATCTCCA-TCT
* * * *
24976369 CCACCACCACCATACTACTACAAGTCCCCACCACCACCATCGCCATCT
1 CCACCTCCACCATACTACTACAAATCTCCACCACCACCATCTCCATCT
* * * * * * * *
24976417 CCTCTTCCACCATACTACTACAAATCCCCTCCACCTCCTTCACCCTCT
1 CCACCTCCACCATACTACTACAAATCTCCACCACCACCATCTCCATCT
* * * *
24976465 CCTCCACCACCATACTATTACAAATCACCACCACC
1 CCACCTCCACCATACTACTACAAATCTCCACCACC
24976500 TCCAGTAGAG
Statistics
Matches: 572, Mismatches: 157, Indels: 52
0.73 0.20 0.07
Matches are distributed among these distances:
45 5 0.01
46 5 0.01
47 22 0.04
48 507 0.89
49 23 0.04
50 5 0.01
51 5 0.01
ACGTcount: A:0.28, C:0.48, G:0.03, T:0.22
Consensus pattern (48 bp):
CCACCTCCACCATACTACTACAAATCTCCACCACCACCATCTCCATCT
Found at i:24975829 original size:27 final size:27
Alignment explanation
Indices: 24975798--24975878 Score: 93
Period size: 27 Copynumber: 3.2 Consensus size: 27
24975788 ACGAAGAAAA
*
24975798 ACCTCCATACTACTACAAGTCTCCTCC
1 ACCTCCATACTACTACAAGTCTCCACC
*
24975825 ACCTCCAT-CT-C--C-A-TCCCCACC
1 ACCTCCATACTACTACAAGTCTCCACC
*
24975846 TCCTCCATACTACTACAAGTCTCCACC
1 ACCTCCATACTACTACAAGTCTCCACC
24975873 ACCTCC
1 ACCTCC
24975879 TCCACATTAC
Statistics
Matches: 43, Mismatches: 5, Indels: 12
0.72 0.08 0.20
Matches are distributed among these distances:
21 13 0.30
22 3 0.07
23 2 0.05
25 2 0.05
26 3 0.07
27 20 0.47
ACGTcount: A:0.23, C:0.51, G:0.02, T:0.23
Consensus pattern (27 bp):
ACCTCCATACTACTACAAGTCTCCACC
Found at i:24976502 original size:48 final size:48
Alignment explanation
Indices: 24975802--24976499 Score: 490
Period size: 48 Copynumber: 14.5 Consensus size: 48
24975792 AGAAAAACCT
* * * * * * * *
24975802 CCATACTACTACAAGTCTCCTCCACCTCCATCTCCATCCCCACCTCCT
1 CCATACTACTACAAATCTCCACCACCACCATCACCATCTCCTCCACCA
* * *
24975850 CCATACTACTACAAGTCTCCACCACCTCC-TC-CACAT-TACGTCTCACCA
1 CCATACTACTACAAATCTCCACCACCACCATCAC-CATCT-CCTC-CACCA
* * * **
24975898 CCATACTATTATAAATCTCCACCACCACCATCGCCATCTCCTCTTCCA
1 CCATACTACTACAAATCTCCACCACCACCATCACCATCTCCTCCACCA
* * *
24975946 CCATACTACTACAAATCCCCGCCACCACCAGT--CCATTCTCCACCACCA
1 CCATACTACTACAAATCTCCACCACCACCA-TCACCA-TCTCCTCCACCA
* * **
24975994 CCATACTATTACAAATCTCCACCACCACCATCGCCATCTCCTCTTCCA
1 CCATACTACTACAAATCTCCACCACCACCATCACCATCTCCTCCACCA
* * * * * *
24976042 CCATACTACTACAAATCACCTCCACCTCCTTCACCCTCTCC-CACACCC
1 CCATACTACTACAAATCTCCACCACCACCATCACCATCTCCTC-CACCA
* * * *
24976090 CCATATTATTACAAGTCTCCACCACCACCAGT--CCATTCCCCTCCACCA
1 CCATACTACTACAAATCTCCACCACCACCA-TCACCA-TCTCCTCCACCA
* * * **
24976138 CCATACTACTACAAATCACCACCACCTCCAAT-A-AAGTCTCCAGCACCA
1 CCATACTACTACAAATCTCCACCACCACC-ATCACCA-TCTCCTCCACCA
* * * * * *
24976186 GTC-TACCACTACAACTCTCCTCCTCCACCATCACCATCTCCT-CATCCT
1 -CCATACTACTACAAATCTCCACCACCACCATCACCATCTCCTCCA-CCA
* * * * * * *
24976234 CCATATTACTACAAATCCCCACCACCTCCATCTCCATCACCAT-TACCC
1 CCATACTACTACAAATCTCCACCACCACCATCACCATCTCC-TCCACCA
* * * * * **
24976282 CCATATTACTACAAATCTCCTCCTCCACCGTCGCCATCTCCTCTTCCA
1 CCATACTACTACAAATCTCCACCACCACCATCACCATCTCCTCCACCA
* * * *
24976330 CCCTATTACTACAAATCCCCACCACCACCAGT--CCACTCTCCACCACCA
1 CCATACTACTACAAATCTCCACCACCACCA-TCACCA-TCTCCTCCACCA
* * * **
24976378 CCATACTACTACAAGTCCCCACCACCACCATCGCCATCTCCTCTTCCA
1 CCATACTACTACAAATCTCCACCACCACCATCACCATCTCCTCCACCA
* * * * *
24976426 CCATACTACTACAAATCCCCTCCACCTCCTTCACCCTCTCCTCCACCA
1 CCATACTACTACAAATCTCCACCACCACCATCACCATCTCCTCCACCA
* *
24976474 CCATACTATTACAAATCACCACCACC
1 CCATACTACTACAAATCTCCACCACC
24976500 TCCAGTAGAG
Statistics
Matches: 511, Mismatches: 112, Indels: 54
0.75 0.17 0.08
Matches are distributed among these distances:
46 1 0.00
47 24 0.05
48 461 0.90
49 23 0.05
50 2 0.00
ACGTcount: A:0.27, C:0.48, G:0.02, T:0.22
Consensus pattern (48 bp):
CCATACTACTACAAATCTCCACCACCACCATCACCATCTCCTCCACCA
Found at i:24976521 original size:144 final size:144
Alignment explanation
Indices: 24976234--24976552 Score: 347
Period size: 144 Copynumber: 2.2 Consensus size: 144
24976224 TCCTCATCCT
* * * *
24976234 CCATATTACTACAAATCCCCACCACCTCCATCTCCATCACCATTACCCCCATATTACTACAAATC
1 CCATA-TACTACAAATCCCCACCACCACCATCGCCATCACCATTACCACCATACTACTACAAATC
* * * ** * * * *
24976299 TCCTCCTCCACCGTCGCCATCTCCTCTTCCACCCTATTACTACAAATCCCCACCACCACCAGTCC
65 CCCTCCACCACCGTCACCATCTCCTCCACCACCATACTACTACAAATCACCACCACCACCAGTAC
*
24976364 ACTCTCCACCACC-A
130 ACGCTCCACCACCAA
* * *
24976378 CCATACTACTACAAGTCCCCACCACCACCATCGCCATCTCC-TCTTCCACCATACTACTACAAAT
1 CCATA-TACTACAAATCCCCACCACCACCATCGCCATCACCAT-TACCACCATACTACTACAAAT
* * * * *
24976442 CCCCTCCACCTCCTTCACCCTCTCCTCCACCACCATACTATTACAAATCACCACCACCTCCAGTA
64 CCCCTCCACCACCGTCACCATCTCCTCCACCACCATACTACTACAAATCACCACCACCACCAGTA
* * **
24976507 GAGGCTCCGGCACCAA
129 CACGCTCCACCACCAA
24976523 CC-TATCACTACAAATCCCCACCACCACCAT
1 CCATAT-ACTACAAATCCCCACCACCACCAT
24976553 ACTACTACAA
Statistics
Matches: 144, Mismatches: 28, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
143 2 0.01
144 139 0.97
145 3 0.02
ACGTcount: A:0.27, C:0.48, G:0.03, T:0.21
Consensus pattern (144 bp):
CCATATACTACAAATCCCCACCACCACCATCGCCATCACCATTACCACCATACTACTACAAATCC
CCTCCACCACCGTCACCATCTCCTCCACCACCATACTACTACAAATCACCACCACCACCAGTACA
CGCTCCACCACCAA
Found at i:24976535 original size:192 final size:193
Alignment explanation
Indices: 24975802--24976551 Score: 763
Period size: 192 Copynumber: 3.9 Consensus size: 193
24975792 AGAAAAACCT
* * * * * * * *
24975802 CCATACTACTACAAGTCTCCTCCACCTCCATCTCCATCCCCACCTCCTCCATACTACTACAAGTC
1 CCATACTACTACAAGTCTCCACCACCACCATCGCCATCTCCTCTTCCACCATACTACTACAAATC
* * * * *
24975867 TCCACCACCTCCTCCA-CAT-TACGTCTCACCACCATACTATTATAAATCTCCACCACCACCA-T
66 CCCACCACCTCCTTCACCATCT-CCTCACACCACCATACTATTACAAATCTCCACCACCACCAGT
* * *
24975929 CGCCATCTCCTCTTCCACCATACTACTACAAATCCCCGCCACCACCAGTCCATTCTCCACCACCA
130 CG-CATCTCCTCTACCACCATACTACTACAAATCCCCACCACCACCAGTCCACTCTCCACCACCA
* *
24975994 CCATACTATTACAAATCTCCACCACCACCATCGCCATCTCCTCTTCCACCATACTACTACAAATC
1 CCATACTACTACAAGTCTCCACCACCACCATCGCCATCTCCTCTTCCACCATACTACTACAAATC
* * * * * *
24976059 ACCTCCACCTCCTTCACCCTCTCC-CACACCCCCATATTATTACAAGTCTCCACCACCACCAGTC
66 CCCACCACCTCCTTCACCATCTCCTCACACCACCATACTATTACAAATCTCCACCACCACCAGTC
* * * * * ** * *
24976123 -CATTCCCCTCCACCACCATACTACTACAAATCACCACCACCTCCAATAAAGTCTCCAGCACCA
131 GCA-TCTCCTCTACCACCATACTACTACAAATCCCCACCACCACCAGTCCACTCTCCACCACCA
* * * * * * * * *
24976186 GTC-TACCACTACAACTCTCCTCCTCCACCATCACCATCTCCTCATCCTCCATATTACTACAAAT
1 -CCATACTACTACAAGTCTCCACCACCACCATCGCCATCTCCTCTTCCACCATACTACTACAAAT
* * * * * * * *
24976250 CCCCACCACCTCCATCTCCATCACCATTAC-CC-CCATATTACTACAAATCTCCTCCTCCACC-G
65 CCCCACCACCTCCTTCACCATCTCC-TCACACCACCATACTATTACAAATCTCCACCACCACCAG
* * *
24976312 TCGCCATCTCCTCTTCCACCCTATTACTACAAATCCCCACCACCACCAGTCCACTCTCCACCACC
129 TCG-CATCTCCTCTACCACCATACTACTACAAATCCCCACCACCACCAGTCCACTCTCCACCACC
24976377 A
193 A
*
24976378 CCATACTACTACAAGTCCCCACCACCACCATCGCCATCTCCTCTTCCACCATACTACTACAAATC
1 CCATACTACTACAAGTCTCCACCACCACCATCGCCATCTCCTCTTCCACCATACTACTACAAATC
* * * * *
24976443 CCCTCCACCTCCTTCACCCTCTCCTC-CACCACCATACTATTACAAATCACCACCACCTCCAGTA
66 CCCACCACCTCCTTCACCATCTCCTCACACCACCATACTATTACAAATCTCCACCACCACCAGTC
* *
24976507 G-AGGCTCCGGC-ACCAACC-TA-TCACTACAAATCCCCACCACCACCA
131 GCA-TCTCC-TCTACC-ACCATACT-ACTACAAATCCCCACCACCACCA
24976552 TACTACTACA
Statistics
Matches: 451, Mismatches: 90, Indels: 34
0.78 0.16 0.06
Matches are distributed among these distances:
190 1 0.00
191 11 0.02
192 419 0.93
193 17 0.04
194 3 0.01
ACGTcount: A:0.27, C:0.48, G:0.03, T:0.22
Consensus pattern (193 bp):
CCATACTACTACAAGTCTCCACCACCACCATCGCCATCTCCTCTTCCACCATACTACTACAAATC
CCCACCACCTCCTTCACCATCTCCTCACACCACCATACTATTACAAATCTCCACCACCACCAGTC
GCATCTCCTCTACCACCATACTACTACAAATCCCCACCACCACCAGTCCACTCTCCACCACCA
Found at i:24976559 original size:27 final size:27
Alignment explanation
Indices: 24976529--24976607 Score: 77
Period size: 30 Copynumber: 2.8 Consensus size: 27
24976519 CCAACCTATC
24976529 ACTACAAATCCCCACCACCACCATACT
1 ACTACAAATCCCCACCACCACCATACT
* * *
24976556 ACTACAACTCTCCCCCACCACCCCCATATT
1 ACTACAA--AT-CCCCACCACCACCATACT
* * *
24976586 ATTACAAGTCCCCACCCCCACC
1 ACTACAAATCCCCACCACCACC
24976608 TTCCCCATCA
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
27 18 0.43
28 1 0.02
29 1 0.02
30 22 0.52
ACGTcount: A:0.30, C:0.52, G:0.01, T:0.16
Consensus pattern (27 bp):
ACTACAAATCCCCACCACCACCATACT
Found at i:24976640 original size:48 final size:48
Alignment explanation
Indices: 24976570--24976697 Score: 168
Period size: 48 Copynumber: 2.7 Consensus size: 48
24976560 CAACTCTCCC
*
24976570 CCACCACC-CCCATATTATTACAAGTCCCCACCCCCACCTTCCCCATCA
1 CCACCACCTCCC-TACTATTACAAGTCCCCACCCCCACCTTCCCCATCA
* * * *
24976618 CCACCACCTCCCTACTACTACAAGTCTCCACCTCCACCTTCCCCGTCA
1 CCACCACCTCCCTACTATTACAAGTCCCCACCCCCACCTTCCCCATCA
* * *
24976666 CCACCACATCCTTACTATTACAAATCCCCACC
1 CCACCACCTCCCTACTATTACAAGTCCCCACC
24976698 TCCTCCCTCA
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
48 66 0.96
49 3 0.04
ACGTcount: A:0.25, C:0.52, G:0.02, T:0.20
Consensus pattern (48 bp):
CCACCACCTCCCTACTATTACAAGTCCCCACCCCCACCTTCCCCATCA
Found at i:24976715 original size:48 final size:48
Alignment explanation
Indices: 24976585--24976700 Score: 169
Period size: 48 Copynumber: 2.4 Consensus size: 48
24976575 ACCCCCATAT
* *
24976585 TATTACAAGTCCCCACCCCCACCTTCCCCATCACCACCACCTCCCTAC
1 TATTACAAGTCCCCACCTCCACCTTCCCCATCACCACCACATCCCTAC
* * * *
24976633 TACTACAAGTCTCCACCTCCACCTTCCCCGTCACCACCACATCCTTAC
1 TATTACAAGTCCCCACCTCCACCTTCCCCATCACCACCACATCCCTAC
*
24976681 TATTACAAATCCCCACCTCC
1 TATTACAAGTCCCCACCTCC
24976701 TCCCTCACCC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 59 1.00
ACGTcount: A:0.24, C:0.52, G:0.03, T:0.22
Consensus pattern (48 bp):
TATTACAAGTCCCCACCTCCACCTTCCCCATCACCACCACATCCCTAC
Found at i:24985692 original size:76 final size:74
Alignment explanation
Indices: 24985553--24985815 Score: 233
Period size: 76 Copynumber: 3.6 Consensus size: 74
24985543 ATATTAACAT
24985553 ATCATAATAAATGATAATGTGACATAACATTAATATTTTTACTCTTCACATGAGTGACATGTTAG
1 ATCATAATAAATGATAATGTGACATAACATTAATATTTTTACTCTTCACATGAGTGACATGTTAG
* *
24985618 TATTATATG
66 TATCATATC
* * * * * * *
24985627 ATTATAATAAATGATGATGTGATATAACGATATGATATTTTTACTCTTTATATGAGTGTCATGTT
1 ATCATAATAAATGATAATGTGACATAAC-AT-TAATATTTTTACTCTTCACATGAGTGACATGTT
*
24985692 AGTATCATGTC
64 AGTATCATATC
* ** * *
24985703 ATCATAAT-AA--AT-A----AC--AATA-TGGTATTTTTACTCTTCATATGAGTGTCATGTTAG
1 ATCATAATAAATGATAATGTGACATAACATTAATATTTTTACTCTTCACATGAGTGACATGTTAG
* *
24985757 TATCATGTG
66 TATCATATC
* * *
24985766 ATCATAATAAATGATGATGTGACATAATGATATGATATTTTTACTCTTCA
1 ATCATAATAAATGATAATGTGACATAA-CAT-TAATATTTTTACTCTTCA
24985816 TATTAGTGCT
Statistics
Matches: 156, Mismatches: 18, Indels: 28
0.77 0.09 0.14
Matches are distributed among these distances:
63 49 0.31
64 2 0.01
65 1 0.01
66 4 0.03
67 1 0.01
68 1 0.01
71 2 0.01
72 1 0.01
73 4 0.03
74 26 0.17
75 4 0.03
76 61 0.39
ACGTcount: A:0.35, C:0.10, G:0.14, T:0.41
Consensus pattern (74 bp):
ATCATAATAAATGATAATGTGACATAACATTAATATTTTTACTCTTCACATGAGTGACATGTTAG
TATCATATC
Found at i:24985749 original size:63 final size:63
Alignment explanation
Indices: 24985650--24985777 Score: 220
Period size: 63 Copynumber: 2.0 Consensus size: 63
24985640 ATGATGTGAT
* *
24985650 ATAACGATATGATATTTTTACTCTTTATATGAGTGTCATGTTAGTATCATGTCATCATAATAA
1 ATAACAATATGATATTTTTACTCTTCATATGAGTGTCATGTTAGTATCATGTCATCATAATAA
* *
24985713 ATAACAATATGGTATTTTTACTCTTCATATGAGTGTCATGTTAGTATCATGTGATCATAATAA
1 ATAACAATATGATATTTTTACTCTTCATATGAGTGTCATGTTAGTATCATGTCATCATAATAA
24985776 AT
1 AT
24985778 GATGATGTGA
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.34, C:0.11, G:0.13, T:0.42
Consensus pattern (63 bp):
ATAACAATATGATATTTTTACTCTTCATATGAGTGTCATGTTAGTATCATGTCATCATAATAA
Found at i:24985753 original size:139 final size:139
Alignment explanation
Indices: 24985586--24985840 Score: 395
Period size: 139 Copynumber: 1.8 Consensus size: 139
24985576 ATAACATTAA
* * *
24985586 TATTTTTACTCTTCACATGAGTGACATGTTAGTATTATATGATTATAATAAATGATGATGTGATA
1 TATTTTTACTCTTCACATGAGTGACATGTTAGTATCATATGATCATAATAAATGATGATGTGACA
*
24985651 TAACGATATGATATTTTTACTCTTTATATGAGTG-TCATGTTAGTATCATGTCATCATAATAAAT
66 TAACGATATGATATTTTTACTCTTCATATGAGTGCT-ATGTTAGTATCATGTCATCATAATAAAT
24985715 AACAATATGG
130 AACAATATGG
* * *
24985725 TATTTTTACTCTTCATATGAGTGTCATGTTAGTATCATGTGATCATAATAAATGATGATGTGACA
1 TATTTTTACTCTTCACATGAGTGACATGTTAGTATCATATGATCATAATAAATGATGATGTGACA
* * * *
24985790 TAATGATATGATATTTTTACTCTTCATATTAGTGCTGTGTTAGTATTATGT
66 TAACGATATGATATTTTTACTCTTCATATGAGTGCTATGTTAGTATCATGT
24985841 GATCTAAAAT
Statistics
Matches: 104, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
139 103 0.99
140 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.15, T:0.44
Consensus pattern (139 bp):
TATTTTTACTCTTCACATGAGTGACATGTTAGTATCATATGATCATAATAAATGATGATGTGACA
TAACGATATGATATTTTTACTCTTCATATGAGTGCTATGTTAGTATCATGTCATCATAATAAATA
ACAATATGG
Found at i:24994087 original size:2 final size:2
Alignment explanation
Indices: 24994082--24994111 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
24994072 CCCCCCCATC
24994082 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
24994112 TACCCCTCTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:24994624 original size:33 final size:33
Alignment explanation
Indices: 24994587--24994682 Score: 86
Period size: 33 Copynumber: 2.9 Consensus size: 33
24994577 AGTTGCTACA
*
24994587 TATGGCCAATCAACACAGCCAGGTGCTAATATC
1 TATGGCCAATCAGCACAGCCAGGTGCTAATATC
* * **
24994620 TATGGTC-AGCAGGCACAATCAGGTGCTAATATC
1 TATGGCCAATCA-GCACAGCCAGGTGCTAATATC
** * * *
24994653 TACAGCCAATCCGGACAGCCAAGTGCTAAT
1 TATGGCCAATCAGCACAGCCAGGTGCTAAT
24994683 CCTTATGTTC
Statistics
Matches: 47, Mismatches: 14, Indels: 4
0.72 0.22 0.06
Matches are distributed among these distances:
32 3 0.06
33 42 0.89
34 2 0.04
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (33 bp):
TATGGCCAATCAGCACAGCCAGGTGCTAATATC
Found at i:24994874 original size:33 final size:33
Alignment explanation
Indices: 24994667--24994861 Score: 219
Period size: 33 Copynumber: 5.9 Consensus size: 33
24994657 GCCAATCCGG
* ** * *
24994667 ACAGCCAAGTGCTAATCCTTATGTTCAACCCGG
1 ACAGCCAAGTGCTAATCCATATGGCCAACCTGC
* **
24994700 ACAGCCAAGTGCTAATCCTTATGGCCAACAGGC
1 ACAGCCAAGTGCTAATCCATATGGCCAACCTGC
* * *
24994733 ACAGCCAAGCGCTAATCCATATGGCCAATCTGT
1 ACAGCCAAGTGCTAATCCATATGGCCAACCTGC
* * * *
24994766 GCAGCCAAGCGTTAATCCATATGGCCAATCTGC
1 ACAGCCAAGTGCTAATCCATATGGCCAACCTGC
* *
24994799 ACAGCCAAGCGCTAATCCATATGGCCAACCTTC
1 ACAGCCAAGTGCTAATCCATATGGCCAACCTGC
* *
24994832 ACAACCAAGTGCTAATCCTTATGGCCAACC
1 ACAGCCAAGTGCTAATCCATATGGCCAACC
24994862 CACACAACCA
Statistics
Matches: 141, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 141 1.00
ACGTcount: A:0.30, C:0.32, G:0.18, T:0.21
Consensus pattern (33 bp):
ACAGCCAAGTGCTAATCCATATGGCCAACCTGC
Found at i:24995668 original size:6 final size:6
Alignment explanation
Indices: 24995621--24995664 Score: 61
Period size: 6 Copynumber: 7.3 Consensus size: 6
24995611 GATGGGTTCT
* * *
24995621 GGCATG GGCATG GGCATG GGTATG GGCATG GGGATG GGAATG GG
1 GGCATG GGCATG GGCATG GGCATG GGCATG GGCATG GGCATG GG
24995665 AATGAGCGGC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.18, C:0.09, G:0.55, T:0.18
Consensus pattern (6 bp):
GGCATG
Found at i:25022089 original size:25 final size:23
Alignment explanation
Indices: 25022060--25022111 Score: 59
Period size: 25 Copynumber: 2.2 Consensus size: 23
25022050 AATTTAANAA
25022060 AATATTATAAAAATAAAAATTATAT
1 AATATTATAAAAAT-AAAATTAT-T
* **
25022085 AATATTTTAATGATAAAATTATT
1 AATATTATAAAAATAAAATTATT
25022108 AATA
1 AATA
25022112 ATTTAATACT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 5 0.21
24 8 0.33
25 11 0.46
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (23 bp):
AATATTATAAAAATAAAATTATT
Found at i:25038257 original size:18 final size:19
Alignment explanation
Indices: 25038234--25038269 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
25038224 ACATTTAAAC
*
25038234 TTATAATT-GAAAAATAAG
1 TTATAATTACAAAAATAAG
25038252 TTATAATTACAAAAATAA
1 TTATAATTACAAAAATAA
25038270 CAAGCATGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.58, C:0.03, G:0.06, T:0.33
Consensus pattern (19 bp):
TTATAATTACAAAAATAAG
Done.