Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39371879
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2227820 characters in sequence are not A, C, G, or T
File 100 of 103
Found at i:37241473 original size:24 final size:23
Alignment explanation
Indices: 37241446--37241503 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 23
37241436 ATTATATCAT
37241446 AAATATGTAAAAGTAAAAATTTAA
1 AAATAT-TAAAAGTAAAAATTTAA
* * *
37241470 AAATTATTTAAAGTAAATATTTTA
1 AAA-TATTAAAAGTAAAAATTTAA
*
37241494 AAATAATAAA
1 AAATATTAAA
37241504 TACATATTTT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
23 5 0.18
24 20 0.71
25 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.34
Consensus pattern (23 bp):
AAATATTAAAAGTAAAAATTTAA
Found at i:37241804 original size:14 final size:14
Alignment explanation
Indices: 37241771--37241813 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
37241761 AAGGGAGATA
* *
37241771 AATTGTAAAAGAAT
1 AATTATAAAATAAT
37241785 -ATTATAAAATAAT
1 AATTATAAAATAAT
37241798 AATTATAAAATAAT
1 AATTATAAAATAAT
37241812 AA
1 AA
37241814 ATGAAATATC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
13 11 0.42
14 15 0.58
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.33
Consensus pattern (14 bp):
AATTATAAAATAAT
Found at i:37254320 original size:19 final size:19
Alignment explanation
Indices: 37254296--37254336 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
37254286 AACATTTAAC
37254296 TCATTGATTAGTATATGAT
1 TCATTGATTAGTATATGAT
37254315 TCATTGATTAGTATATGAT
1 TCATTGATTAGTATATGAT
37254334 TCA
1 TCA
37254337 CTGCTTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.32, C:0.07, G:0.15, T:0.46
Consensus pattern (19 bp):
TCATTGATTAGTATATGAT
Found at i:37270204 original size:19 final size:19
Alignment explanation
Indices: 37270182--37270221 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
37270172 TTTGACTTAC
* *
37270182 AATAAAAAATTAAAAATTT
1 AATAAAAAATAAAAAAATT
37270201 AATAAAAAATAAAAAAATT
1 AATAAAAAATAAAAAAATT
37270220 AA
1 AA
37270222 AGTTTTGATC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (19 bp):
AATAAAAAATAAAAAAATT
Found at i:37290294 original size:40 final size:40
Alignment explanation
Indices: 37290249--37290336 Score: 158
Period size: 40 Copynumber: 2.2 Consensus size: 40
37290239 TATCATCAAC
*
37290249 ATAAACAATAAGTAATGTGATCTTACCATTATAGTGTTTA
1 ATAAACAATAAGTAATGTGATCTTACCATTACAGTGTTTA
37290289 ATAAACAATAAGTAATGTGATCTTACCATTACAGTGTTTA
1 ATAAACAATAAGTAATGTGATCTTACCATTACAGTGTTTA
*
37290329 CTAAACAA
1 ATAAACAA
37290337 CGTATGATCA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 46 1.00
ACGTcount: A:0.42, C:0.12, G:0.11, T:0.34
Consensus pattern (40 bp):
ATAAACAATAAGTAATGTGATCTTACCATTACAGTGTTTA
Found at i:37296179 original size:72 final size:72
Alignment explanation
Indices: 37296062--37296225 Score: 267
Period size: 72 Copynumber: 2.3 Consensus size: 72
37296052 TGAGGGTAAG
* * *
37296062 TGGAACAGGCCCTCAAGTCCTGAGAAATGGCGGAGGCCTTCCAGTCCGGTTCGCTATCATGTCGA
1 TGGAATAGGCCCTCAAGTCCGGAGAAATGGCGGAGGCCTTCCAGTCCGGTTCGCTATCATATCGA
37296127 AGAGAAA
66 AGAGAAA
37296134 TGGAATAGGCTCC-CAAGTCCGGAGAAATGGCGGAGGCCTTCCAGTCCGGTTCGCTATCATATCG
1 TGGAATAGGC-CCTCAAGTCCGGAGAAATGGCGGAGGCCTTCCAGTCCGGTTCGCTATCATATCG
37296198 AAGAGAAA
65 AAGAGAAA
* *
37296206 TGGAATAGGCCTTCGAGTCC
1 TGGAATAGGCCCTCAAGTCC
37296226 AGTTCACGAG
Statistics
Matches: 85, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
71 1 0.01
72 82 0.96
73 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (72 bp):
TGGAATAGGCCCTCAAGTCCGGAGAAATGGCGGAGGCCTTCCAGTCCGGTTCGCTATCATATCGA
AGAGAAA
Found at i:37300994 original size:25 final size:25
Alignment explanation
Indices: 37300959--37301013 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
37300949 AAGAAAATTT
*
37300959 ATTTAATTAAA-AATAAAATATAAAA
1 ATTTAAGTAAATAATAAAA-ATAAAA
* *
37300984 ATTTAAGTAAATAATAATAATAATA
1 ATTTAAGTAAATAATAAAAATAAAA
37301009 ATTTA
1 ATTTA
37301014 TTTTAATTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 20 0.77
26 6 0.23
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (25 bp):
ATTTAAGTAAATAATAAAAATAAAA
Found at i:37301002 original size:29 final size:30
Alignment explanation
Indices: 37300952--37301008 Score: 71
Period size: 29 Copynumber: 1.9 Consensus size: 30
37300942 TATTAATAAG
** *
37300952 AAAATTTATTTAATTAAAAATAA-AATATA
1 AAAATTTAAGTAAATAAAAATAATAATATA
*
37300981 AAAATTTAAGTAAATAATAATAATAATA
1 AAAATTTAAGTAAATAAAAATAATAATA
37301009 ATTTATTTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
29 19 0.83
30 4 0.17
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (30 bp):
AAAATTTAAGTAAATAAAAATAATAATATA
Found at i:37301016 original size:29 final size:29
Alignment explanation
Indices: 37300920--37301021 Score: 88
Period size: 28 Copynumber: 3.7 Consensus size: 29
37300910 AAATGATATA
* * * *
37300920 AATAATATTTTAATTAATTAATTATTAAT
1 AATAATAATTTATTTAATTAAATAATAAT
*
37300949 AAGAA-AATTTATTTAATTAAA-AATAA-
1 AATAATAATTTATTTAATTAAATAATAAT
** *
37300975 AAT-ATAA-AAATTTAAGTAAATAATAAT
1 AATAATAATTTATTTAATTAAATAATAAT
37301002 AATAATAATTTATTTTAATT
1 AATAATAATTTA-TTTAATT
37301022 TTTTAAAAAT
Statistics
Matches: 55, Mismatches: 12, Indels: 11
0.71 0.15 0.14
Matches are distributed among these distances:
25 11 0.20
26 9 0.16
27 7 0.13
28 17 0.31
29 5 0.09
30 6 0.11
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (29 bp):
AATAATAATTTATTTAATTAAATAATAAT
Found at i:37307601 original size:48 final size:49
Alignment explanation
Indices: 37307524--37307622 Score: 173
Period size: 48 Copynumber: 2.0 Consensus size: 49
37307514 GATGAAAGCC
37307524 ATAAAAGATGTAAAATGAGTTAAGCATTCTCATAAAGCTAATCCTTGGA
1 ATAAAAGATGTAAAATGAGTTAAGCATTCTCATAAAGCTAATCCTTGGA
* *
37307573 ATAAAAGATGT-AAATGAGTTAAGGATTCTCATAAAGCTAATCCTTTGA
1 ATAAAAGATGTAAAATGAGTTAAGCATTCTCATAAAGCTAATCCTTGGA
37307621 AT
1 AT
37307623 TGTAAGAGAT
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
48 37 0.77
49 11 0.23
ACGTcount: A:0.42, C:0.11, G:0.16, T:0.30
Consensus pattern (49 bp):
ATAAAAGATGTAAAATGAGTTAAGCATTCTCATAAAGCTAATCCTTGGA
Found at i:37309263 original size:12 final size:12
Alignment explanation
Indices: 37309242--37309276 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
37309232 CTGCCACTGA
37309242 AGAA-AAGAAAG
1 AGAAGAAGAAAG
*
37309253 AGAAGAAGAAAA
1 AGAAGAAGAAAG
37309265 AGAAGAAGAAAG
1 AGAAGAAGAAAG
37309277 CTGATCAGGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 4 0.19
12 17 0.81
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (12 bp):
AGAAGAAGAAAG
Found at i:37313063 original size:2 final size:2
Alignment explanation
Indices: 37313044--37313084 Score: 59
Period size: 2 Copynumber: 21.5 Consensus size: 2
37313034 CTTGAAGAAA
*
37313044 TC TC TC T- TC TA TC T- TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
37313084 T
1 T
37313085 TCTTCAGATT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
1 2 0.06
2 33 0.94
ACGTcount: A:0.02, C:0.44, G:0.00, T:0.54
Consensus pattern (2 bp):
TC
Found at i:37313063 original size:14 final size:14
Alignment explanation
Indices: 37313044--37313089 Score: 58
Period size: 16 Copynumber: 3.1 Consensus size: 14
37313034 CTTGAAGAAA
37313044 TCTCTCT-TCTATCT
1 TCTCTCTCTCT-TCT
37313058 TCTCTCTCTCTCTCT
1 TCTCTCTCTCT-TCT
37313073 CTCTCTCTCTCTTCT
1 -TCTCTCTCTCTTCT
37313088 TC
1 TC
37313090 AGATTCAACC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
14 9 0.31
15 9 0.31
16 11 0.38
ACGTcount: A:0.02, C:0.43, G:0.00, T:0.54
Consensus pattern (14 bp):
TCTCTCTCTCTTCT
Found at i:37319970 original size:2 final size:2
Alignment explanation
Indices: 37319963--37319996 Score: 52
Period size: 2 Copynumber: 17.0 Consensus size: 2
37319953 TGAATCCGTA
37319963 CT CT CT CT -T GCT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT -CT CT CT CT CT CT CT CT CT CT CT CT
37319997 TTGTCACCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 1 0.03
2 28 0.93
3 1 0.03
ACGTcount: A:0.00, C:0.47, G:0.03, T:0.50
Consensus pattern (2 bp):
CT
Found at i:37346299 original size:22 final size:23
Alignment explanation
Indices: 37346271--37346418 Score: 82
Period size: 22 Copynumber: 6.6 Consensus size: 23
37346261 ATAAATAACA
37346271 TATTAATATTTAAATT-ATCAAT
1 TATTAATATTTAAATTAATCAAT
37346293 TATTAATATTTTAAA--AAT-AA-
1 TATTAATA-TTTAAATTAATCAAT
* * **
37346313 -AATAAAATAAAAATTAATC-A-
1 TATTAATATTTAAATTAATCAAT
* *
37346333 TAATAATATTTAAATTAAAT-AAA
1 TATTAATATTTAAATT-AATCAAT
* * *
37346356 TGTTAATATTTAAA-TGATTAAT
1 TATTAATATTTAAATTAATCAAT
*
37346378 TATTAATATTTTAATTAAATTCTAGAT
1 TATTAATATTTAAATT-AA-TC-A-AT
37346405 TATTAATATTTAAA
1 TATTAATATTTAAA
37346419 AAATCTAATA
Statistics
Matches: 95, Mismatches: 16, Indels: 25
0.70 0.12 0.18
Matches are distributed among these distances:
18 4 0.04
19 5 0.05
20 4 0.04
21 16 0.17
22 29 0.31
23 19 0.20
24 1 0.01
25 1 0.01
26 1 0.01
27 15 0.16
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (23 bp):
TATTAATATTTAAATTAATCAAT
Found at i:37346301 original size:47 final size:46
Alignment explanation
Indices: 37346246--37346387 Score: 122
Period size: 44 Copynumber: 3.2 Consensus size: 46
37346236 TTAATAAAAA
37346246 TATTAATATTAAATTATAAATAACATATTAATATTTAAATTATCAAT
1 TATTAATATTAAATTATAAATAA-ATATTAATATTTAAATTATCAAT
* * **
37346293 TATTAATATT---TTAAAAATAAA-A-TAAAATAAAAATTAATC-A-
1 TATTAATATTAAATTATAAATAAATATTAATATTTAAATT-ATCAAT
* * * *
37346333 TAATAATATTTAAA-T-TAAATAAATGTTAATATTTAAATGATTAAT
1 TATTAATA-TTAAATTATAAATAAATATTAATATTTAAATTATCAAT
37346378 TATTAATATT
1 TATTAATATT
37346388 TTAATTAAAT
Statistics
Matches: 73, Mismatches: 13, Indels: 21
0.68 0.12 0.20
Matches are distributed among these distances:
40 7 0.10
41 13 0.18
42 11 0.15
43 4 0.05
44 21 0.29
45 7 0.10
47 10 0.14
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.43
Consensus pattern (46 bp):
TATTAATATTAAATTATAAATAAATATTAATATTTAAATTATCAAT
Found at i:37346362 original size:23 final size:23
Alignment explanation
Indices: 37346243--37346397 Score: 96
Period size: 22 Copynumber: 7.0 Consensus size: 23
37346233 TTTTTAATAA
37346243 AAATATTAATA-TTAAATTATAAAT
1 AAATATTAATATTTAAA-T-TAAAT
37346267 AACATATTAATATTTAAATT--AT
1 AA-ATATTAATATTTAAATTAAAT
* *
37346289 CAATTATTAATATTTTAA--AAAT
1 -AAATATTAATATTTAAATTAAAT
* **
37346311 AAA-A-TAAAATAAAAATT-AAT
1 AAATATTAATATTTAAATTAAAT
* *
37346331 -CATAATAATATTTAAATTAAAT
1 AAATATTAATATTTAAATTAAAT
* * *
37346353 AAATGTTAATATTTAAA-TGATT
1 AAATATTAATATTTAAATTAAAT
* *
37346375 AATTATTAATATTTTAATTAAAT
1 AAATATTAATATTTAAATTAAAT
37346398 TCTAGATTAT
Statistics
Matches: 98, Mismatches: 21, Indels: 25
0.68 0.15 0.17
Matches are distributed among these distances:
19 8 0.08
20 5 0.05
21 12 0.12
22 37 0.38
23 18 0.18
24 3 0.03
25 10 0.10
26 5 0.05
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.43
Consensus pattern (23 bp):
AAATATTAATATTTAAATTAAAT
Found at i:37352633 original size:2 final size:2
Alignment explanation
Indices: 37352628--37352667 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
37352618 CCAAACTTTA
37352628 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
37352668 GTGTGTTTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:37372541 original size:21 final size:21
Alignment explanation
Indices: 37372491--37372555 Score: 87
Period size: 21 Copynumber: 3.1 Consensus size: 21
37372481 AGGGCACACT
37372491 CAAGAAAAATCAATTTCTTTA
1 CAAGAAAAATCAATTTCTTTA
* * *
37372512 CAA-ACAAAAACAAATCCTTTA
1 CAAGA-AAAATCAATTTCTTTA
37372533 CAAGAAAAATCAATTTCTTTA
1 CAAGAAAAATCAATTTCTTTA
37372554 CA
1 CA
37372556 CTCTTTTCAA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
20 1 0.03
21 34 0.94
22 1 0.03
ACGTcount: A:0.51, C:0.18, G:0.03, T:0.28
Consensus pattern (21 bp):
CAAGAAAAATCAATTTCTTTA
Found at i:37383812 original size:25 final size:23
Alignment explanation
Indices: 37383710--37383818 Score: 75
Period size: 24 Copynumber: 4.7 Consensus size: 23
37383700 ATAATCAATG
*
37383710 TATAATATTTATATAATTACAAAA-
1 TATAATATTTAT-TTATTA-AAAAT
* *
37383734 TATTATATCATATTTA-T-AAAAT
1 TATAATAT-TTATTTATTAAAAAT
37383756 TATAATAATTTATTT-TTAAAAAT
1 TATAAT-ATTTATTTATTAAAAAT
*
37383779 TTTAA-ATTTATTTATTAACAAAAT
1 TATAATATTTATTTATT-A-AAAAT
*
37383803 AATAATATTTGATTTA
1 TATAATATTT-ATTTA
37383819 CTAATAATAT
Statistics
Matches: 67, Mismatches: 8, Indels: 18
0.72 0.09 0.19
Matches are distributed among these distances:
21 12 0.18
22 13 0.19
23 13 0.19
24 17 0.25
25 7 0.10
26 5 0.07
ACGTcount: A:0.48, C:0.03, G:0.01, T:0.49
Consensus pattern (23 bp):
TATAATATTTATTTATTAAAAAT
Found at i:37396076 original size:45 final size:45
Alignment explanation
Indices: 37396025--37396114 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
37396015 TATTTCCACC
37396025 AGCAAAAGCAGCAGAGTTTCATACAGTGTATGGGAAGTCTCCTAG
1 AGCAAAAGCAGCAGAGTTTCATACAGTGTATGGGAAGTCTCCTAG
37396070 AGCAAAAGCAGCAGAGTTTCATACAGTGTATGGGAAGTCTCCTAG
1 AGCAAAAGCAGCAGAGTTTCATACAGTGTATGGGAAGTCTCCTAG
37396115 CTAACAAGTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.33, C:0.18, G:0.27, T:0.22
Consensus pattern (45 bp):
AGCAAAAGCAGCAGAGTTTCATACAGTGTATGGGAAGTCTCCTAG
Found at i:37412327 original size:22 final size:22
Alignment explanation
Indices: 37412283--37412327 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
37412273 TTAATGAACC
* *
37412283 TAAATATTGTTGTTTGTTATTG
1 TAAATATTGATGTTTATTATTG
37412305 TAAATGATTGATGTTTATT-TTG
1 TAAAT-ATTGATGTTTATTATTG
37412327 T
1 T
37412328 TCGAGACTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.24, C:0.00, G:0.18, T:0.58
Consensus pattern (22 bp):
TAAATATTGATGTTTATTATTG
Found at i:37433322 original size:13 final size:13
Alignment explanation
Indices: 37433304--37433330 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
37433294 GAAATACATG
37433304 TTACAGATGATGC
1 TTACAGATGATGC
37433317 TTACAGATGATGC
1 TTACAGATGATGC
37433330 T
1 T
37433331 ATGACAGCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (13 bp):
TTACAGATGATGC
Found at i:37454595 original size:39 final size:39
Alignment explanation
Indices: 37454522--37454616 Score: 127
Period size: 39 Copynumber: 2.4 Consensus size: 39
37454512 AAAATAATAA
*
37454522 GAATCCTCTCCTCTTTCTGCAAGGGCTCTGCAATTTCGG
1 GAATCCTCTCCTCTTTCTGCAAGGACTCTGCAATTTCGG
* * * * *
37454561 GAGTCCTCTCCTCTTTCTTCAATGACTTTTCAATTTCGG
1 GAATCCTCTCCTCTTTCTGCAAGGACTCTGCAATTTCGG
*
37454600 GAATCCTCTTCTCTTTC
1 GAATCCTCTCCTCTTTC
37454617 CTGAACCTTC
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 48 1.00
ACGTcount: A:0.15, C:0.31, G:0.15, T:0.40
Consensus pattern (39 bp):
GAATCCTCTCCTCTTTCTGCAAGGACTCTGCAATTTCGG
Found at i:37459421 original size:15 final size:14
Alignment explanation
Indices: 37459384--37459433 Score: 59
Period size: 14 Copynumber: 3.6 Consensus size: 14
37459374 AATAATTGAT
*
37459384 TATTTAAATATTAA
1 TATTTAATTATTAA
*
37459398 TATTT--TTATTTA
1 TATTTAATTATTAA
37459410 TAATTTAATTATTAA
1 T-ATTTAATTATTAA
37459425 TATTTAATT
1 TATTTAATT
37459434 TATAATTTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
12 6 0.20
13 4 0.13
14 13 0.43
15 7 0.23
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (14 bp):
TATTTAATTATTAA
Found at i:37459441 original size:26 final size:27
Alignment explanation
Indices: 37459376--37459457 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 27
37459366 AAAATATTAA
* *
37459376 TAATTGATTATTTAAATATTAATATTT
1 TAATTTATAATTTAAATATTAATATTT
* *
37459403 TTATTTATAATTTAATTATTAATA-TT
1 TAATTTATAATTTAAATATTAATATTT
*
37459429 TAATTTATAATTTAAATATTAATTTTT
1 TAATTTATAATTTAAATATTAATATTT
37459456 TA
1 TA
37459458 TAATATATAA
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 23 0.49
27 24 0.51
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.59
Consensus pattern (27 bp):
TAATTTATAATTTAAATATTAATATTT
Found at i:37473732 original size:20 final size:21
Alignment explanation
Indices: 37473707--37473747 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
37473697 TTTAACTATT
37473707 AATAATT-TATTTAAAATATC
1 AATAATTATATTTAAAATATC
*
37473727 AATAATTGATATTTTAAATAT
1 AATAATT-ATATTTAAAATAT
37473748 TAATTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
22 11 0.61
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.46
Consensus pattern (21 bp):
AATAATTATATTTAAAATATC
Found at i:37473799 original size:11 final size:10
Alignment explanation
Indices: 37473785--37473818 Score: 50
Period size: 11 Copynumber: 3.2 Consensus size: 10
37473775 ATTATGATTA
37473785 AATTATTAATT
1 AATT-TTAATT
37473796 AATTTTAGATT
1 AATTTTA-ATT
37473807 AATTTTAATT
1 AATTTTAATT
37473817 AA
1 AA
37473819 AATTATTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 8 0.36
11 14 0.64
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (10 bp):
AATTTTAATT
Found at i:37473900 original size:18 final size:19
Alignment explanation
Indices: 37473878--37473927 Score: 52
Period size: 17 Copynumber: 2.8 Consensus size: 19
37473868 TATTATTATG
*
37473878 ATTAAAATATTAATT-AAT
1 ATTAAAATATTAATTAAAA
* *
37473896 TTTAAATTATT--TTAAAA
1 ATTAAAATATTAATTAAAA
37473913 ATTAAAATATTAATT
1 ATTAAAATATTAATT
37473928 GTTTATCATA
Statistics
Matches: 24, Mismatches: 5, Indels: 5
0.71 0.15 0.15
Matches are distributed among these distances:
16 2 0.08
17 11 0.46
18 9 0.38
19 2 0.08
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
ATTAAAATATTAATTAAAA
Found at i:37473946 original size:97 final size:99
Alignment explanation
Indices: 37473743--37473943 Score: 257
Period size: 97 Copynumber: 2.0 Consensus size: 99
37473733 TGATATTTTA
* * * *
37473743 AATATTAATTTTTTTATTTATAATTTAATATTATTATGATTAAATTATTAATTAATTTTAGATTA
1 AATATTAATTTTTTAATTTATAATTAAATATTATTATGATTAAAATATTAATTAATTTTAAATTA
*****
37473808 ATTTTAATTAAAATTATTAATTGTTTNNNNNATT
66 ATTTTAATTAAAATTATTAATTGTTTATCATATT
37473842 AATATTAA-TTTTTAATTTATAA-TAAATATTATTATGATTAAAATATTAATTAATTTTAAATT-
1 AATATTAATTTTTTAATTTATAATTAAATATTATTATGATTAAAATATTAATTAATTTTAAATTA
37473904 ATTTTAAAAATTAAAA-TATTAATTGTTTATCATATGT
66 ATTTT---AATTAAAATTATTAATTGTTTATCATAT-T
37473941 AAT
1 AAT
37473944 TAAAATCTTA
Statistics
Matches: 89, Mismatches: 9, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
96 5 0.06
97 37 0.42
98 27 0.30
99 20 0.22
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.52
Consensus pattern (99 bp):
AATATTAATTTTTTAATTTATAATTAAATATTATTATGATTAAAATATTAATTAATTTTAAATTA
ATTTTAATTAAAATTATTAATTGTTTATCATATT
Found at i:37482408 original size:19 final size:19
Alignment explanation
Indices: 37482384--37482441 Score: 64
Period size: 21 Copynumber: 2.9 Consensus size: 19
37482374 TTTCTTCTAA
37482384 CATTTGGTTAAGAAATACT
1 CATTTGGTTAAGAAATACT
* *
37482403 CATTTGG-CAATCTGTAATACT
1 CATTTGGTTAA---GAAATACT
37482424 CATTTGGTTAAGAAATAC
1 CATTTGGTTAAGAAATAC
37482442 CATGCTCTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
18 2 0.06
19 13 0.42
21 14 0.45
22 2 0.06
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36
Consensus pattern (19 bp):
CATTTGGTTAAGAAATACT
Found at i:37490219 original size:73 final size:70
Alignment explanation
Indices: 37490094--37490252 Score: 212
Period size: 73 Copynumber: 2.2 Consensus size: 70
37490084 GAAGAGAAGG
37490094 AAACAACAGAGCAAGCGAAAAACAAAGAAAGGAAGAAAGATAACAGTCATGAGTTGAGCAGAAAA
1 AAACAACAGAGCAAGCGAAAAACAAAGAAAGGAAGAAAGATAACAGTCATGAGTTGAGCAGAAAA
37490159 GTTGTATT
66 G-T-T-TT
* * * * * *
37490167 AAACAACAGAGGAAGCGAAAAA-ACAGGAAAGGAAGAACGATAATAGTGATGAGTTGGGCAGAAA
1 AAACAACAGAGCAAGCGAAAAACA-AAGAAAGGAAGAAAGATAACAGTCATGAGTTGAGCAGAAA
*
37490231 CGTTTT
65 AGTTTT
37490237 AAACAACAGAGCAAGC
1 AAACAACAGAGCAAGC
37490253 TTAATAGATA
Statistics
Matches: 77, Mismatches: 8, Indels: 5
0.86 0.09 0.06
Matches are distributed among these distances:
70 17 0.22
71 1 0.01
72 2 0.03
73 57 0.74
ACGTcount: A:0.50, C:0.12, G:0.25, T:0.13
Consensus pattern (70 bp):
AAACAACAGAGCAAGCGAAAAACAAAGAAAGGAAGAAAGATAACAGTCATGAGTTGAGCAGAAAA
GTTTT
Found at i:37501893 original size:22 final size:22
Alignment explanation
Indices: 37501863--37501904 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
37501853 AAAAAACTAA
*
37501863 AATATTATAAAAATTATAAACT
1 AATAATATAAAAATTATAAACT
**
37501885 AATAATATAATTATTATAAA
1 AATAATATAAAAATTATAAA
37501905 AATATGTGAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (22 bp):
AATAATATAAAAATTATAAACT
Found at i:37539167 original size:18 final size:18
Alignment explanation
Indices: 37539146--37539184 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
37539136 TTTGATCTTG
37539146 ATTTGAATTGATTCTTTA
1 ATTTGAATTGATTCTTTA
*
37539164 ATTTGAGTTGATTCTTTA
1 ATTTGAATTGATTCTTTA
37539182 ATT
1 ATT
37539185 AGATTGTATG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.26, C:0.05, G:0.13, T:0.56
Consensus pattern (18 bp):
ATTTGAATTGATTCTTTA
Found at i:37542713 original size:2 final size:2
Alignment explanation
Indices: 37542706--37542745 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
37542696 AAAAGCCAAC
37542706 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
37542746 TTATTCATGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:37543271 original size:20 final size:20
Alignment explanation
Indices: 37543220--37543271 Score: 52
Period size: 20 Copynumber: 2.6 Consensus size: 20
37543210 TTGAAACCAC
*
37543220 AAAAAAGGAAAACAGCAAAA
1 AAAAAAAGAAAACAGCAAAA
* **
37543240 AAGAAACCAAAATCA-CAAAA
1 AAAAAAAGAAAA-CAGCAAAA
37543260 AAAAAAAGAAAA
1 AAAAAAAGAAAA
37543272 AGAAAAAGCC
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
20 23 0.92
21 2 0.08
ACGTcount: A:0.77, C:0.12, G:0.10, T:0.02
Consensus pattern (20 bp):
AAAAAAAGAAAACAGCAAAA
Found at i:37544341 original size:30 final size:30
Alignment explanation
Indices: 37544307--37544370 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
37544297 ATAATGAATG
* * * *
37544307 AAAATAACTTAATGAATTAATTAGAAACAA
1 AAAATAACTGAAGGAAATAATTAAAAACAA
*
37544337 AAAATAACTGAAGGAAATAATTAAAAATAA
1 AAAATAACTGAAGGAAATAATTAAAAACAA
37544367 AAAA
1 AAAA
37544371 CTTTTATTAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.66, C:0.05, G:0.08, T:0.22
Consensus pattern (30 bp):
AAAATAACTGAAGGAAATAATTAAAAACAA
Found at i:37552807 original size:6 final size:6
Alignment explanation
Indices: 37552796--37552845 Score: 82
Period size: 6 Copynumber: 8.3 Consensus size: 6
37552786 GCTCCACATG
* *
37552796 ATCTTC ATCTTC ATCTTC ATATTC ATCTTC ATCTTC ATCATC ATCTTC
1 ATCTTC ATCTTC ATCTTC ATCTTC ATCTTC ATCTTC ATCTTC ATCTTC
37552844 AT
1 AT
37552846 TATCTTCTCC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 40 1.00
ACGTcount: A:0.22, C:0.30, G:0.00, T:0.48
Consensus pattern (6 bp):
ATCTTC
Found at i:37568982 original size:31 final size:31
Alignment explanation
Indices: 37568947--37569006 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
37568937 CTCTTAATAA
*
37568947 TTAGAAAAAAAAAGGTCAATCATTAGCTTTT
1 TTAGAAAAAAAAAGGTCAACCATTAGCTTTT
* * *
37568978 TTAGAGAAAAAAGGGTCAACCATTGGCTT
1 TTAGAAAAAAAAAGGTCAACCATTAGCTT
37569007 CTAACAACTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.42, C:0.12, G:0.18, T:0.28
Consensus pattern (31 bp):
TTAGAAAAAAAAAGGTCAACCATTAGCTTTT
Found at i:37584132 original size:54 final size:54
Alignment explanation
Indices: 37584050--37584157 Score: 216
Period size: 54 Copynumber: 2.0 Consensus size: 54
37584040 GAATAAGAGA
37584050 TTGTGATTCATTAGAAGAAATATTTGAACATGAAGCGCTCAATACCAACGACTT
1 TTGTGATTCATTAGAAGAAATATTTGAACATGAAGCGCTCAATACCAACGACTT
37584104 TTGTGATTCATTAGAAGAAATATTTGAACATGAAGCGCTCAATACCAACGACTT
1 TTGTGATTCATTAGAAGAAATATTTGAACATGAAGCGCTCAATACCAACGACTT
37584158 ACATTCAGTG
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.30
Consensus pattern (54 bp):
TTGTGATTCATTAGAAGAAATATTTGAACATGAAGCGCTCAATACCAACGACTT
Found at i:37601230 original size:42 final size:42
Alignment explanation
Indices: 37601178--37601258 Score: 126
Period size: 42 Copynumber: 1.9 Consensus size: 42
37601168 AAACCTTAAG
* *
37601178 TATCCATATGAATTTAGTCTAATGTTACATTGAAACTTTGGA
1 TATCAATATGAATTTAATCTAATGTTACATTGAAACTTTGGA
* *
37601220 TATCAATATGAATTTAATCTAATTTTATATTGAAACTTT
1 TATCAATATGAATTTAATCTAATGTTACATTGAAACTTT
37601259 AGTAAAGCTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.36, C:0.10, G:0.10, T:0.44
Consensus pattern (42 bp):
TATCAATATGAATTTAATCTAATGTTACATTGAAACTTTGGA
Found at i:37601747 original size:2 final size:2
Alignment explanation
Indices: 37601740--37601772 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
37601730 AAAGAATCAC
37601740 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
37601773 GAGCTATTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:37630600 original size:21 final size:21
Alignment explanation
Indices: 37630562--37630601 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
37630552 TTGCTCATTT
* *
37630562 TTCTCCATCTCAATCCCTTTC
1 TTCTCCATCACAACCCCTTTC
*
37630583 TTCTCCCTCACAACCCCTT
1 TTCTCCATCACAACCCCTT
37630602 CGATTTCTCT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.15, C:0.47, G:0.00, T:0.38
Consensus pattern (21 bp):
TTCTCCATCACAACCCCTTTC
Found at i:37631783 original size:17 final size:17
Alignment explanation
Indices: 37631761--37631802 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
37631751 TTAAATTTTA
*
37631761 AATTTAT-TTATTATGAT
1 AATTTATATT-TTAAGAT
37631778 AATTTATATTTTAAGAT
1 AATTTATATTTTAAGAT
37631795 ATATTTAT
1 A-ATTTAT
37631803 GATAAATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 14 0.64
18 8 0.36
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (17 bp):
AATTTATATTTTAAGAT
Found at i:37631816 original size:32 final size:31
Alignment explanation
Indices: 37631743--37631816 Score: 82
Period size: 31 Copynumber: 2.5 Consensus size: 31
37631733 GACATTAGGA
* *
37631743 GATAAA-AA-TTAAATTTTAAATTTATTTAT
1 GATAAATAATTTATATTTTAAATATATTTAT
* *
37631772 TAT-GATAATTTATATTTTAAGATATATTTAT
1 GATAAATAATTTATATTTTAA-ATATATTTAT
37631803 GATAAATAATTTAT
1 GATAAATAATTTAT
37631817 GTTTATCATT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
28 1 0.03
29 4 0.11
30 10 0.29
31 11 0.31
32 9 0.26
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (31 bp):
GATAAATAATTTATATTTTAAATATATTTAT
Found at i:37641559 original size:12 final size:12
Alignment explanation
Indices: 37641542--37641576 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
37641532 TTTCTATGAC
37641542 CATAGTGGAACA
1 CATAGTGGAACA
*
37641554 CATAGTGGGACA
1 CATAGTGGAACA
*
37641566 CAAAGTGGAAC
1 CATAGTGGAAC
37641577 CCCGATCTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.40, C:0.17, G:0.29, T:0.14
Consensus pattern (12 bp):
CATAGTGGAACA
Found at i:37674936 original size:10 final size:10
Alignment explanation
Indices: 37674918--37674975 Score: 59
Period size: 10 Copynumber: 5.9 Consensus size: 10
37674908 TATAATTAAT
37674918 TATATTAAAAA
1 TATA-TAAAAA
37674929 TATATAAAAA
1 TATATAAAAA
37674939 T-TA-AAAAA
1 TATATAAAAA
*
37674947 AATATAAAAA
1 TATATAAAAA
*
37674957 TAAATAATAAA
1 TATATAA-AAA
37674968 TA-ATAAAA
1 TATATAAAA
37674976 TTATTTGTTC
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
8 5 0.12
9 6 0.15
10 21 0.51
11 9 0.22
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (10 bp):
TATATAAAAA
Found at i:37674943 original size:17 final size:17
Alignment explanation
Indices: 37674921--37674970 Score: 57
Period size: 18 Copynumber: 2.9 Consensus size: 17
37674911 AATTAATTAT
37674921 ATTAAAAATATATAAAA
1 ATTAAAAATATATAAAA
*
37674938 ATTAAAAAAAATATAAAA
1 ATT-AAAAATATATAAAA
*
37674956 A-TAAATAATAAATAA
1 ATTAAA-AATATATAA
37674971 TAAAATTATT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
16 3 0.11
17 11 0.39
18 14 0.50
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (17 bp):
ATTAAAAATATATAAAA
Found at i:37678822 original size:133 final size:134
Alignment explanation
Indices: 37678523--37678792 Score: 339
Period size: 134 Copynumber: 2.0 Consensus size: 134
37678513 ATAAATTATT
* * * *
37678523 TGTATCATATTAATAAATTATCAGTACGTGGAGCCCCTAAGAAAAAATCTGTCAAACAATTTTAG
1 TGTATCATATTAATAAATCAACAGGACATGGAGCCCCTAAGAAAAAATCTGTCAAACAATTTTAG
* * * *
37678588 TCAATGTAAACAGAAACTTCTGTTTTGATTTAGAGAAACGAGCTATGGGGGCCAGAGGAATAAAT
66 TCAATGTAAACAGAAACTTCTGTTGTGATTTAGAGAAACGAGCTATGGGGGCCAGAAGAAGAAAG
**
37678653 TATT
131 TAAC
* * * ** *
37678657 TGTATCATATTAATAAATTACCAGTAGGTGGAGTCCCTAAGAAAAAATCTGTCAAA-AATTTTAG
1 TGTATCATATTAATAAATCAACAGGACATGGAGCCCCTAAGAAAAAATCTGTCAAACAATTTTAG
*
37678721 TCAATGTGAACAGAAACTTCTGTTGTGATTTAGAGAAACGAGCTAT-GGGG-CAGCAAAGAAGAG
66 TCAATGTAAACAGAAACTTCTGTTGTGATTTAGAGAAACGAGCTATGGGGGCCAG--AAGAAGA-
37678784 AAGTAAC
128 AAGTAAC
37678791 TG
1 TG
37678793 AGTCTTTGCT
Statistics
Matches: 123, Mismatches: 10, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
131 3 0.02
132 4 0.03
133 57 0.46
134 59 0.48
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.28
Consensus pattern (134 bp):
TGTATCATATTAATAAATCAACAGGACATGGAGCCCCTAAGAAAAAATCTGTCAAACAATTTTAG
TCAATGTAAACAGAAACTTCTGTTGTGATTTAGAGAAACGAGCTATGGGGGCCAGAAGAAGAAAG
TAAC
Found at i:37704920 original size:20 final size:21
Alignment explanation
Indices: 37704869--37704917 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
37704859 CTGCACAGCA
37704869 AAAGAAAATGAGTTCATGATC
1 AAAGAAAATGAGTTCATGATC
*
37704890 AAAGAAAATGAGTTCATGTTC
1 AAAGAAAATGAGTTCATGATC
37704911 AAAGAAA
1 AAAGAAA
37704918 TGATAAAAGC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.51, C:0.08, G:0.18, T:0.22
Consensus pattern (21 bp):
AAAGAAAATGAGTTCATGATC
Found at i:37707455 original size:25 final size:25
Alignment explanation
Indices: 37707420--37707471 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 25
37707410 ATTTCCATCA
**
37707420 CAATTTCAGTGGATCCGAGGAAGTT
1 CAATTTCAGTGGATCAAAGGAAGTT
*
37707445 CAATTTTAGTGGATCAAAGGAAGTT
1 CAATTTCAGTGGATCAAAGGAAGTT
37707470 CA
1 CA
37707472 GTGTGTTGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.29
Consensus pattern (25 bp):
CAATTTCAGTGGATCAAAGGAAGTT
Found at i:37716533 original size:2 final size:2
Alignment explanation
Indices: 37716526--37716561 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
37716516 TTTCTCTTAC
37716526 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
37716562 ATTAGTTGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:37716646 original size:2 final size:2
Alignment explanation
Indices: 37716639--37716675 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
37716629 CTTGNCTTAC
37716639 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
37716676 ATTAGTTGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:37716698 original size:114 final size:112
Alignment explanation
Indices: 37716521--37716746 Score: 434
Period size: 114 Copynumber: 2.0 Consensus size: 112
37716511 AATTCTTTCT
37716521 CTTACATATATATATATATATATATATATATATATATTATAATTAGTTGAAAAATGAGAGATAAA
1 CTTACATATATATATATATATATATATATATATATATTATAATTAGTTGAAAAATGAGAGATAAA
37716586 GACCAGTCAAATCTCTCTGAAATAAAGGGTTTTTGCATATCCCCTTG
66 GACCAGTCAAATCTCTCTGAAATAAAGGGTTTTTGCATATCCCCTTG
37716633 NCTTACTATATATATATATATATATATATATATATATATTATAATTAGTTGAAAAATGAGAGATA
1 -CTTAC-ATATATATATATATATATATATATATATATATTATAATTAGTTGAAAAATGAGAGATA
37716698 AAGACCAGTCAAATCTCTCTGAAATAAAGGGTTTTTGCATATCCCCTTG
64 AAGACCAGTCAAATCTCTCTGAAATAAAGGGTTTTTGCATATCCCCTTG
37716747 GCCTCACAGT
Statistics
Matches: 112, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
113 5 0.04
114 107 0.96
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.37
Consensus pattern (112 bp):
CTTACATATATATATATATATATATATATATATATATTATAATTAGTTGAAAAATGAGAGATAAA
GACCAGTCAAATCTCTCTGAAATAAAGGGTTTTTGCATATCCCCTTG
Found at i:37717970 original size:3 final size:3
Alignment explanation
Indices: 37717962--37717992 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
37717952 TATTGTATGT
37717962 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
37717993 TTGAACACCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:37719400 original size:2 final size:2
Alignment explanation
Indices: 37719393--37719417 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
37719383 TTGTATTTAA
37719393 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
37719418 ATCGATCCGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:37721838 original size:28 final size:29
Alignment explanation
Indices: 37721798--37721853 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 29
37721788 AAAAAAGCAG
*
37721798 TGGTTTGATTCTCAAACTGAATT-CAAAA
1 TGGTTAGATTCTCAAACTGAATTACAAAA
*
37721826 TGGTTAGATTCTCACACTGAATTACAAA
1 TGGTTAGATTCTCAAACTGAATTACAAA
37721854 TGCTCAAGTC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 21 0.84
29 4 0.16
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (29 bp):
TGGTTAGATTCTCAAACTGAATTACAAAA
Found at i:37723746 original size:24 final size:24
Alignment explanation
Indices: 37723718--37723767 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
37723708 AAGAAAAAGA
37723718 AAGGTAATTATGAACTCTACAGGT
1 AAGGTAATTATGAACTCTACAGGT
37723742 AAGGTAATTATGAACTCTACAGGT
1 AAGGTAATTATGAACTCTACAGGT
37723766 AA
1 AA
37723768 CGTTTCTGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.40, C:0.12, G:0.20, T:0.28
Consensus pattern (24 bp):
AAGGTAATTATGAACTCTACAGGT
Found at i:37740553 original size:18 final size:18
Alignment explanation
Indices: 37740526--37740571 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
37740516 TGTCACGTAT
* *
37740526 ACACGTTTAAACGCGATA
1 ACACGATTAAACACGATA
*
37740544 ACACGATTAAATACGATA
1 ACACGATTAAACACGATA
*
37740562 ACAAGATTAA
1 ACACGATTAA
37740572 GTAAACATGT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.48, C:0.17, G:0.13, T:0.22
Consensus pattern (18 bp):
ACACGATTAAACACGATA
Found at i:37740597 original size:11 final size:11
Alignment explanation
Indices: 37740581--37740615 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
37740571 AGTAAACATG
37740581 TTTAAATGTGT
1 TTTAAATGTGT
37740592 TTTAAATGTGT
1 TTTAAATGTGT
* *
37740603 TTGAAACGTGT
1 TTTAAATGTGT
37740614 TT
1 TT
37740616 GTTGTGTCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.26, C:0.03, G:0.20, T:0.51
Consensus pattern (11 bp):
TTTAAATGTGT
Found at i:37740597 original size:21 final size:22
Alignment explanation
Indices: 37740573--37740615 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
37740563 CAAGATTAAG
*
37740573 TAAACATGTTT-AAATGTGTTT
1 TAAACATGTTTGAAACGTGTTT
**
37740594 TAAATGTGTTTGAAACGTGTTT
1 TAAACATGTTTGAAACGTGTTT
37740616 GTTGTGTCTA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.30, C:0.05, G:0.19, T:0.47
Consensus pattern (22 bp):
TAAACATGTTTGAAACGTGTTT
Found at i:37745243 original size:78 final size:78
Alignment explanation
Indices: 37745130--37745358 Score: 404
Period size: 78 Copynumber: 2.9 Consensus size: 78
37745120 TGAGCAGGCA
* *
37745130 TTTTATGATCATGGGCTGGATCTGGCTCTACTTTGTCCTGCAAATTTGCATCTTCGAATGGTATT
1 TTTTATGATCATGGGCTGGATCTGGCTCTACTTTGTCCTGCAAACTTGCATCTTCAAATGGTATT
37745195 TCTTGAGCAACTT
66 TCTTGAGCAACTT
*
37745208 TTTTATGATCATGGGCTGGATCTGGCTCTACTTTGTCCAGCAAACTTGCATCTTCAAATGGTATT
1 TTTTATGATCATGGGCTGGATCTGGCTCTACTTTGTCCTGCAAACTTGCATCTTCAAATGGTATT
37745273 TCTTGAGCAACTT
66 TCTTGAGCAACTT
* *
37745286 TTTTATGATCATGGGCTGGATCTGGCTCTACTTTGTCCTGCAAACTTGCAACTTCAAATGGTGTT
1 TTTTATGATCATGGGCTGGATCTGGCTCTACTTTGTCCTGCAAACTTGCATCTTCAAATGGTATT
*
37745351 TCCTGAGC
66 TCTTGAGC
37745359 TGAAGCCTGA
Statistics
Matches: 144, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
78 144 1.00
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.39
Consensus pattern (78 bp):
TTTTATGATCATGGGCTGGATCTGGCTCTACTTTGTCCTGCAAACTTGCATCTTCAAATGGTATT
TCTTGAGCAACTT
Found at i:37758410 original size:50 final size:50
Alignment explanation
Indices: 37758330--37758428 Score: 189
Period size: 50 Copynumber: 2.0 Consensus size: 50
37758320 TACCAGTTCC
37758330 TGGAAGACCATATAACAGATAACCGCGTTTCCAAGCCTTGCCAATCTTAA
1 TGGAAGACCATATAACAGATAACCGCGTTTCCAAGCCTTGCCAATCTTAA
*
37758380 TGGAGGACCATATAACAGATAACCGCGTTTCCAAGCCTTGCCAATCTTA
1 TGGAAGACCATATAACAGATAACCGCGTTTCCAAGCCTTGCCAATCTTA
37758429 GAGTAATATT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.24
Consensus pattern (50 bp):
TGGAAGACCATATAACAGATAACCGCGTTTCCAAGCCTTGCCAATCTTAA
Found at i:37768928 original size:179 final size:182
Alignment explanation
Indices: 37768625--37769082 Score: 742
Period size: 179 Copynumber: 2.5 Consensus size: 182
37768615 TTACGCCTTC
* * *
37768625 AAAAAAAAAAAAGCCAACATCCAAGAATATATGATATCTAACATATCCAACCTCTATTTTCTGAA
1 AAAAAAAAAAAAGCCAACATCCAAGAATGTATGATATCTAACATATCCATCCTCTGTTTTCTGAA
* *
37768690 GAAACAAGAATCCAATTTATAGAAAACTATTCCACCATTAGAAGAAGCACAATATTCTCCTCACT
66 GAAACAAGAATCCAATTTATAGAAAACTATTCCACCATTAGAAGAAGCACAAGATTCTCCTCACA
* *
37768755 CTATTCCAGAGGTGAATGTTTTTTGTT-CCCT-ACATGAAATTTCTCA-AAA
131 CTATTCCAGAGGTGAATGATTTTTGTTCCCCTCACATGAAATATCTCAGAAA
* * *
37768804 AAAAAAAAAAAAGCCAACATCCAAGAATGTATGATATCGAACACATCCATCTTCTGTTTTCTGAA
1 AAAAAAAAAAAAGCCAACATCCAAGAATGTATGATATCTAACATATCCATCCTCTGTTTTCTGAA
*
37768869 GAAACAAGAATCCAATTTATAGAAAACTATTCCACCGTTAGAAGAAGCACAAGATTCTCCTCACA
66 GAAACAAGAATCCAATTTATAGAAAACTATTCCACCATTAGAAGAAGCACAAGATTCTCCTCACA
* *
37768934 CTATTTCAGATGTGAATGATTTTTGTTCCCCTGCACATGAAATATCTCAGAAA
131 CTATTCCAGAGGTGAATGATTTTTGTTCCCCT-CACATGAAATATCTCAGAAA
*
37768987 AAGAAAAAAAAAAGCCAACATCCAAGAATGTATGATATCTAACATATCCATCCTCTGTTTTTTGA
1 AA-AAAAAAAAAAGCCAACATCCAAGAATGTATGATATCTAACATATCCATCCTCTGTTTTCTGA
*
37769052 AGCAACAAGAATCCAATTTATAGAAAACTAT
65 AGAAACAAGAATCCAATTTATAGAAAACTAT
37769083 GAGGTGAACG
Statistics
Matches: 256, Mismatches: 18, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
179 145 0.57
180 4 0.02
182 14 0.05
183 5 0.02
184 88 0.34
ACGTcount: A:0.42, C:0.20, G:0.11, T:0.27
Consensus pattern (182 bp):
AAAAAAAAAAAAGCCAACATCCAAGAATGTATGATATCTAACATATCCATCCTCTGTTTTCTGAA
GAAACAAGAATCCAATTTATAGAAAACTATTCCACCATTAGAAGAAGCACAAGATTCTCCTCACA
CTATTCCAGAGGTGAATGATTTTTGTTCCCCTCACATGAAATATCTCAGAAA
Found at i:37792783 original size:31 final size:31
Alignment explanation
Indices: 37792747--37792805 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
37792737 TATTTTTTTT
37792747 CAATTTAATTTTTGT-ATATTAAAAATTAAAA
1 CAATTTAATTTTT-TAATATTAAAAATTAAAA
*
37792778 CAATTTAATTTTTTAATTTTAAAAATTA
1 CAATTTAATTTTTTAATATTAAAAATTA
37792806 TTTTAATTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 1 0.04
31 25 0.96
ACGTcount: A:0.46, C:0.03, G:0.02, T:0.49
Consensus pattern (31 bp):
CAATTTAATTTTTTAATATTAAAAATTAAAA
Found at i:37792814 original size:31 final size:31
Alignment explanation
Indices: 37792743--37792819 Score: 84
Period size: 31 Copynumber: 2.5 Consensus size: 31
37792733 TATATATTTT
37792743 TTTTCAATTTAATTTTTGTATATTAAAAATTA
1 TTTT-AATTTAATTTTTGTATATTAAAAATTA
**** *
37792775 AAACAATTTAATTTTT-TAATTTTAAAAATTA
1 TTTTAATTTAATTTTTGT-ATATTAAAAATTA
37792806 TTTTAATTTAATTT
1 TTTTAATTTAATTT
37792820 CTTTTTTTAA
Statistics
Matches: 35, Mismatches: 9, Indels: 3
0.74 0.19 0.06
Matches are distributed among these distances:
30 1 0.03
31 34 0.97
ACGTcount: A:0.40, C:0.03, G:0.01, T:0.56
Consensus pattern (31 bp):
TTTTAATTTAATTTTTGTATATTAAAAATTA
Found at i:37812453 original size:18 final size:16
Alignment explanation
Indices: 37812414--37812470 Score: 60
Period size: 18 Copynumber: 3.3 Consensus size: 16
37812404 AAATCTTTGT
*
37812414 TTTTCAAAAATTTTAAA
1 TTTT-AAAAATTTTTAA
*
37812431 TTTTTAAAATATGTTTTTA
1 -TTTTAAAA-AT-TTTTAA
37812450 TTTTAAAAATTTTTAA
1 TTTTAAAAATTTTTAA
37812466 TTTTA
1 TTTTA
37812471 TCTTTATAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
16 10 0.29
17 6 0.18
18 14 0.41
19 4 0.12
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.58
Consensus pattern (16 bp):
TTTTAAAAATTTTTAA
Found at i:37818818 original size:27 final size:27
Alignment explanation
Indices: 37818744--37818811 Score: 127
Period size: 27 Copynumber: 2.5 Consensus size: 27
37818734 GGAGGATAAT
37818744 TTTTGCATGGCATGGAGAATTTCTAAC
1 TTTTGCATGGCATGGAGAATTTCTAAC
*
37818771 TTTTGCATGGCATGAAGAATTTCTAAC
1 TTTTGCATGGCATGGAGAATTTCTAAC
37818798 TTTTGCATGGCATG
1 TTTTGCATGGCATG
37818812 TGAAATTGGT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.25, C:0.15, G:0.22, T:0.38
Consensus pattern (27 bp):
TTTTGCATGGCATGGAGAATTTCTAAC
Found at i:37821674 original size:14 final size:14
Alignment explanation
Indices: 37821648--37821700 Score: 63
Period size: 14 Copynumber: 3.8 Consensus size: 14
37821638 NNNNNNNNNN
37821648 TTTCCTCTTTTTATT
1 TTTCCT-TTTTTATT
37821663 TTTCCTTTTTTATT
1 TTTCCTTTTTTATT
* **
37821677 TTTCCATTCCT-TT
1 TTTCCTTTTTTATT
37821690 TTTCCTTTTTT
1 TTTCCTTTTTT
37821701 TTCCTTTTTT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
13 10 0.31
14 16 0.50
15 6 0.19
ACGTcount: A:0.06, C:0.21, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTCCTTTTTTATT
Found at i:37821713 original size:11 final size:10
Alignment explanation
Indices: 37821687--37821712 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
37821677 TTTCCATTCC
37821687 TTTTTTCCTT
1 TTTTTTCCTT
37821697 TTTTTTCCTT
1 TTTTTTCCTT
37821707 TTTTTT
1 TTTTTT
37821713 TAAATATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (10 bp):
TTTTTTCCTT
Found at i:37822305 original size:15 final size:15
Alignment explanation
Indices: 37822287--37822353 Score: 70
Period size: 14 Copynumber: 4.7 Consensus size: 15
37822277 AATTTTTTAC
37822287 CTTTTTTCTTTTTCT
1 CTTTTTTCTTTTTCT
37822302 C-TTTTTC-TTTTCT
1 CTTTTTTCTTTTTCT
* * *
37822315 -TTCTTTGTTTCT-T
1 CTTTTTTCTTTTTCT
*
37822328 CTTTTTTCCTTTTCT
1 CTTTTTTCTTTTTCT
37822343 CTTTTTTCTTT
1 CTTTTTTCTTT
37822354 CAATTTTTTT
Statistics
Matches: 40, Mismatches: 8, Indels: 8
0.71 0.14 0.14
Matches are distributed among these distances:
13 11 0.28
14 17 0.43
15 12 0.30
ACGTcount: A:0.00, C:0.21, G:0.01, T:0.78
Consensus pattern (15 bp):
CTTTTTTCTTTTTCT
Found at i:37822376 original size:42 final size:41
Alignment explanation
Indices: 37822287--37822373 Score: 117
Period size: 41 Copynumber: 2.2 Consensus size: 41
37822277 AATTTTTTAC
*
37822287 CTTTTTTCTTTTTCTCTTTTTCTTTTCTTTCTTTGTTTCTT
1 CTTTTTTCCTTTTCTCTTTTTCTTTTCTTTCTTTGTTTCTT
**
37822328 CTTTTTTCCTTTTCTCTTTTT-TCTTTCAAT-TTT-TTTCTT
1 CTTTTTTCCTTTTCTCTTTTTCT-TTTCTTTCTTTGTTTCTT
37822367 CTTTTTT
1 CTTTTTT
37822374 TTTTCTAAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
39 13 0.31
40 4 0.10
41 25 0.60
ACGTcount: A:0.02, C:0.20, G:0.01, T:0.77
Consensus pattern (41 bp):
CTTTTTTCCTTTTCTCTTTTTCTTTTCTTTCTTTGTTTCTT
Found at i:37822379 original size:14 final size:13
Alignment explanation
Indices: 37822287--37822377 Score: 65
Period size: 13 Copynumber: 6.8 Consensus size: 13
37822277 AATTTTTTAC
*
37822287 CTTTTTTCTTTTT
1 CTTTTTTTTTTTT
* *
37822300 CTCTTTTTCTTTT
1 CTTTTTTTTTTTT
*
37822313 CTTTCTTTGTTTCTT
1 CTTT-TTT-TTTTTT
**
37822328 CTTTTTTCCTTTT
1 CTTTTTTTTTTTT
* *
37822341 CTCTTTTTTCTTT
1 CTTTTTTTTTTTT
** *
37822354 CAATTTTTTTCTT
1 CTTTTTTTTTTTT
37822367 CTTTTTTTTTT
1 CTTTTTTTTTT
37822378 CTAAAACTTA
Statistics
Matches: 56, Mismatches: 20, Indels: 4
0.70 0.25 0.05
Matches are distributed among these distances:
13 42 0.75
14 6 0.11
15 8 0.14
ACGTcount: A:0.02, C:0.19, G:0.01, T:0.78
Consensus pattern (13 bp):
CTTTTTTTTTTTT
Found at i:37831335 original size:13 final size:13
Alignment explanation
Indices: 37831317--37831341 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37831307 ACTTTTTAAT
37831317 CATCTTTCAATAA
1 CATCTTTCAATAA
37831330 CATCTTTCAATA
1 CATCTTTCAATA
37831342 TCTTTTTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.24, G:0.00, T:0.40
Consensus pattern (13 bp):
CATCTTTCAATAA
Found at i:37835420 original size:989 final size:985
Alignment explanation
Indices: 37833456--37835432 Score: 3447
Period size: 988 Copynumber: 2.0 Consensus size: 985
37833446 TCAGTGTTCA
*
37833456 CATAAAATATTGGATCCCTTTTTTATTTATCTTAAATTAAATAACACAACAAAAGATAAACATAT
1 CATAAAATATTGGATCCCTTTTTTATTTATCATAAATTAAATAACACAACAAAAGATAAACATAT
* *
37833521 TTCTGAAAGAAAGACAGGATTGGATCAAACCTGTGTGTAACTCTGAATCAAAAAACCCAACTTAG
66 TTCTGAAAAAAAGACAGGATTGGATCAAACCTGTGTGTAACTCTGAATCAAAAAACACAACTTAG
37833586 ATGAGATGCTTGGGGACCAGCTTCGGACATTTTCAAGGATATGGCAAAGAGCCACGTGATGCATG
131 ATGAGATGCTTGGGGACCAGCTTCGGACATTTTCAAGGATATGGCAAAGAGCCACGTGATGCATG
37833651 TGTTCTCTGACCATATTCTAGCAGTGTGATCAAAATTAAGCCATTAATTTTTCCTCTTAGTGCAG
196 TGTTCTCTGACCATATTCTAGCAGTGTGATCAAAATTAAGCCATTAATTTTTCCTCTTAGTGCAG
* * *
37833716 CAATGGTCAAAAGATAGTGAAGCCTCTCCCATTCCTGATCAGTGTTGTGGGTTAACTGTCAGATA
261 CAATGGTCAAAAGATAGTGAAGCCCCTCCCATTCCTGATCAGTGTCGTGGGTTAACTGTCAAATA
* *
37833781 TGTTGTTGTATTTAGAAGGTTAGGAATTTTGCTTTTTATTTTGTTTTGGGTCATAAAGTCTCCCA
326 TGATGTTGTATTTAGAAGGTTAGGAATTTTGCTTTTTATTTTGTTTTGGGTCATAAAGTCTCCAA
* *
37833846 CTCTTGATCCGGAAGACTTTCATATTTCTCTGCAAGTACTACTGGAACCTTGCTTTTTGTTATTC
391 CTCTTGATCCGGAAGACTTTCATATTTCTCTGCAAGTACTACTGGAACCTTACTTTTTATTATTC
37833911 TCTTTTGTGAGAAATTATGAATAATAATATTTTTATCTTTCAAAAAAAAAAAAATTCTGATCAGT
456 TCTTTTGTGAGAAATTATGAATAATAATATTTTTATCTTTC---AAAAAAAAAATTCTGATCAGT
*
37833976 GTGGAAGGGAGGATAATTTTTGCATGGCACGGAGAATTTCTAACTTCGGTATGGCATATGAAATT
518 GTGGAAGAGAGGATAATTTTTGCATGGCACGGAGAATTTCTAACTTCGGTATGGCATATGAAATT
*
37834041 GGGGTTCAAGACTGACAATTGAGAGTGACTCCTCTTGATAGTGTGAAGGAGACCAGCTCAATTTC
583 GGGGTTCAAGACTGACAATTGAGAGCGACTCCTCTTGATAGTGTGAAGGAGACCAGCTCAATTTC
37834106 AAGCAAATACTCCAAAAAAATTTTCTCCTCATTAATTATTTGCCGGTAGTCAAGTGTGTTGCACA
648 AAGCAAATACTCCAAAAAAATTTTCTCCTCATTAATTATTTGCCGGTAGTCAAGTGTGTTGCACA
*
37834171 TTCAATCTGTCCATATGTATAAGTCCATGTCTCGAATAATTGTTGAATTCAATTTTTCATATGTG
713 TTCAATCTGTCCATATGTATAAGTCCATGTCTCGAATAATTGTTGAATTCAATTTTTCATACGTG
* * *
37834236 TAAGGAGAAATCAAGATATCAAGATGACTAGATAAATGGTGTGTATTTAATAAACGTGATTGATT
778 TAAGGAGAAATCAAGATATCAAGATGACTAGATAAATGGTATATATTTAATAAAAGTGATTGATT
*
37834301 TTTTGCATATTTTCAAAGAATCAATTAATGTCTTCATAAGTTTTTTAATTAGATGTCTAACTTTT
843 TTTTGCATATTTTCAAAAAATCAATTAATGTCTTCATAAGTTTTTTAATTAGATGTCTAACTTTT
* *
37834366 GCATGACATATGCAGTGGAATTAATTTCCAAGACTTTACAACATGATAGCGACTCCTCTTGGTAG
908 GCATGACATATGCAATGGAATTAATTTCCAAGACTTTAAAACATGATAGCGACTCCTCTTGGTAG
37834431 TGTTAAGACCTAC
973 TGTTAAGACCTAC
*
37834444 CATAAAATATTGGATCCTTTTTTTATTTATCATAAATTAAATAACACAACAAAAGATAAACATAT
1 CATAAAATATTGGATCCCTTTTTTATTTATCATAAATTAAATAACACAACAAAAGATAAACATAT
* *
37834509 TTCTGAAAAAAAGACAGGATTGGATC-AACCTGTGTGTAACTGTGAATCAAAAAACACAATTTAG
66 TTCTGAAAAAAAGACAGGATTGGATCAAACCTGTGTGTAACTCTGAATCAAAAAACACAACTTAG
* *
37834573 ATGAGATGCTTGGGGACCAGCTTGGGACATTTTCGAGGATATGGCAAAGAGCCACGTGATGCATG
131 ATGAGATGCTTGGGGACCAGCTTCGGACATTTTCAAGGATATGGCAAAGAGCCACGTGATGCATG
* * *
37834638 TGTTCTCTGACCATTTTCTAGCAGTGTGATCGAAATTAAGCC-TTCACTTTTTCCTCTTAGTGCA
196 TGTTCTCTGACCATATTCTAGCAGTGTGATCAAAATTAAGCCATT-AATTTTTCCTCTTAGTGCA
* *
37834702 GCAATGGTCAAAAGATAGTGGAAGCCCCTCTCATTCCTGATTAGTGTCGTGGGTTAACTGTCAAA
260 GCAATGGTCAAAAGATAGT-GAAGCCCCTCCCATTCCTGATCAGTGTCGTGGGTTAACTGTCAAA
37834767 TATGATGTTGTATTTAGAAGGTTAGGAATTTTGCTTTTTATTTTGTTTTGGGTCATAAAGTCTCC
324 TATGATGTTGTATTTAGAAGGTTAGGAATTTTGCTTTTTATTTTGTTTTGGGTCATAAAGTCTCC
** * *
37834832 AACTCTTGATCTTGAAGACTTTCATATTTTTCTGCAAGTACTACTGGAACCTTATTTTTTATTAT
389 AACTCTTGATCCGGAAGACTTTCATATTTCTCTGCAAGTACTACTGGAACCTTACTTTTTATTAT
*
37834897 TCTTTTTTGTGAGAAATTATGAATAATAATATTTTTATCTTTC-AAAAAAAAATTCTGATCAGTG
454 TCTCTTTTGTGAGAAATTATGAATAATAATATTTTTATCTTTCAAAAAAAAAATTCTGATCAGTG
* **
37834961 TGGAAGAGAGGATAATTTTTGCATGGCATGGAGAATTTCTAACTTTTGTATGGCATATGAAATTG
519 TGGAAGAGAGGATAATTTTTGCATGGCACGGAGAATTTCTAACTTCGGTATGGCATATGAAATTG
37835026 GGGTTCAAGACTGACAATTGAGAGCGACTCCTCTTGATAGTGTGAAGGAGACCAGCTCAATTTCA
584 GGGTTCAAGACTGACAATTGAGAGCGACTCCTCTTGATAGTGTGAAGGAGACCAGCTCAATTTCA
* **
37835091 AGCAAATACTCCAAAACAATTTTCTCCTCATTAATTATTTTTTTTTTCGGTAGTCAAGTGTGTTG
649 AGCAAATACTCCAAAAAAATTTTCTCCTCATTAATTA-----TTTGCCGGTAGTCAAGTGTGTTG
37835156 CACATTCAATCTGTCCATATGTATAAGTCCATGTCTCGAATAATTGTTGAATTCAATTTTTCATA
709 CACATTCAATCTGTCCATATGTATAAGTCCATGTCTCGAATAATTGTTGAATTCAATTTTTCATA
*
37835221 CGTGTAAGGAGAAATCAAGATATCAAGATGCCTAGATAAATGGTATATATTTAATAAAAGTGATT
774 CGTGTAAGGAGAAATCAAGATATCAAGATGACTAGATAAATGGTATATATTTAATAAAAGTGATT
* *
37835286 GGTTTTTTGCATATTTTCAAAAAATCAATTAATGTCTTCATCAGTTTTTTAATTAGATGTCTAAC
839 GATTTTTTGCATATTTTCAAAAAATCAATTAATGTCTTCATAAGTTTTTTAATTAGATGTCTAAC
*
37835351 TTTTGCATGACATATGCAATGGAATTAATTTCCAAGACTTTAAAACATGATAGTGACTCCTCTTG
904 TTTTGCATGACATATGCAATGGAATTAATTTCCAAGACTTTAAAACATGATAGCGACTCCTCTTG
37835416 GTAGTGTTAAGACCTAC
969 GTAGTGTTAAGACCTAC
37835433 TTAATTACTA
Statistics
Matches: 938, Mismatches: 44, Indels: 13
0.94 0.04 0.01
Matches are distributed among these distances:
984 182 0.19
986 2 0.00
987 175 0.19
988 292 0.31
989 287 0.31
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (985 bp):
CATAAAATATTGGATCCCTTTTTTATTTATCATAAATTAAATAACACAACAAAAGATAAACATAT
TTCTGAAAAAAAGACAGGATTGGATCAAACCTGTGTGTAACTCTGAATCAAAAAACACAACTTAG
ATGAGATGCTTGGGGACCAGCTTCGGACATTTTCAAGGATATGGCAAAGAGCCACGTGATGCATG
TGTTCTCTGACCATATTCTAGCAGTGTGATCAAAATTAAGCCATTAATTTTTCCTCTTAGTGCAG
CAATGGTCAAAAGATAGTGAAGCCCCTCCCATTCCTGATCAGTGTCGTGGGTTAACTGTCAAATA
TGATGTTGTATTTAGAAGGTTAGGAATTTTGCTTTTTATTTTGTTTTGGGTCATAAAGTCTCCAA
CTCTTGATCCGGAAGACTTTCATATTTCTCTGCAAGTACTACTGGAACCTTACTTTTTATTATTC
TCTTTTGTGAGAAATTATGAATAATAATATTTTTATCTTTCAAAAAAAAAATTCTGATCAGTGTG
GAAGAGAGGATAATTTTTGCATGGCACGGAGAATTTCTAACTTCGGTATGGCATATGAAATTGGG
GTTCAAGACTGACAATTGAGAGCGACTCCTCTTGATAGTGTGAAGGAGACCAGCTCAATTTCAAG
CAAATACTCCAAAAAAATTTTCTCCTCATTAATTATTTGCCGGTAGTCAAGTGTGTTGCACATTC
AATCTGTCCATATGTATAAGTCCATGTCTCGAATAATTGTTGAATTCAATTTTTCATACGTGTAA
GGAGAAATCAAGATATCAAGATGACTAGATAAATGGTATATATTTAATAAAAGTGATTGATTTTT
TGCATATTTTCAAAAAATCAATTAATGTCTTCATAAGTTTTTTAATTAGATGTCTAACTTTTGCA
TGACATATGCAATGGAATTAATTTCCAAGACTTTAAAACATGATAGCGACTCCTCTTGGTAGTGT
TAAGACCTAC
Found at i:37837022 original size:170 final size:170
Alignment explanation
Indices: 37836727--37837060 Score: 411
Period size: 170 Copynumber: 2.0 Consensus size: 170
37836717 AATATACACA
* * * *
37836727 AATTAAAAGGATGAAAGCAAGTCAAAACTTACTCTGATATCACTATTAGGAGGTGGGCTTACAAT
1 AATTAAAAGGATGAAAGCAAGCCAAAACCTACTCTGATAACACTATTAGGAGATGGGCTTACAAT
* * ** * *
37836792 TTCAGATAAATATTTTACTCTCTTTTTTATCGAAAGAAGTTTGTCTTACAATCTTCTTTCGTATA
66 TTCAGATAAATATTTTACTCACTTTTTTATAGAAAGAAACTTGTCTTACAATCCTCTTTCGTACA
* * *
37836857 TACAATAATCTCTTCGCTCTCATTATTATGGAGCATCTAC
131 CAAAATAATCTCTTCGCTCTCATTATTATAGAGCATCTAC
* * * * * * ***
37836897 AATTAAGATGATGAAAGCAAGCCAAAACCTACTTTGATAACATTGTTGGGAGATGGGCTTATTTT
1 AATTAAAAGGATGAAAGCAAGCCAAAACCTACTCTGATAACACTATTAGGAGATGGGCTTACAAT
*
37836962 TTTAGATAAATATTTCT-CTCACTTTTTTATAGAAA-AAACTTGTCTTACAAATCCTCTTTCGTA
66 TTCAGATAAATATTT-TACTCACTTTTTTATAGAAAGAAACTTGTCTTAC-AATCCTCTTTCGTA
* *
37837025 CACAAAATGATCTCTTTGCTCTCATTATTATAGAGC
129 CACAAAATAATCTCTTCGCTCTCATTATTATAGAGC
37837061 GGATATTAGA
Statistics
Matches: 137, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
169 11 0.08
170 125 0.91
171 1 0.01
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.37
Consensus pattern (170 bp):
AATTAAAAGGATGAAAGCAAGCCAAAACCTACTCTGATAACACTATTAGGAGATGGGCTTACAAT
TTCAGATAAATATTTTACTCACTTTTTTATAGAAAGAAACTTGTCTTACAATCCTCTTTCGTACA
CAAAATAATCTCTTCGCTCTCATTATTATAGAGCATCTAC
Found at i:37837273 original size:15 final size:16
Alignment explanation
Indices: 37837253--37837287 Score: 63
Period size: 15 Copynumber: 2.2 Consensus size: 16
37837243 GATATTATTT
37837253 TTAAATTTAAACA-AA
1 TTAAATTTAAACATAA
37837268 TTAAATTTAAACATAA
1 TTAAATTTAAACATAA
37837284 TTAA
1 TTAA
37837288 TCCTTATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 13 0.68
16 6 0.32
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (16 bp):
TTAAATTTAAACATAA
Found at i:37837276 original size:21 final size:21
Alignment explanation
Indices: 37837252--37837321 Score: 63
Period size: 21 Copynumber: 3.3 Consensus size: 21
37837242 AGATATTATT
37837252 TTTAAATTTAAACAAATTAAA
1 TTTAAATTTAAACAAATTAAA
** ** *
37837273 TTTAAACAT-AATTAATCCT-TA
1 TTTAAATTTAAACAAAT--TAAA
37837294 TTTAAATTTAAACAAATTAAA
1 TTTAAATTTAAACAAATTAAA
37837315 TTTAAAT
1 TTTAAAT
37837322 ATAATAGATA
Statistics
Matches: 35, Mismatches: 10, Indels: 8
0.66 0.19 0.15
Matches are distributed among these distances:
20 6 0.17
21 23 0.66
22 6 0.17
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.41
Consensus pattern (21 bp):
TTTAAATTTAAACAAATTAAA
Found at i:37837494 original size:15 final size:16
Alignment explanation
Indices: 37837474--37837508 Score: 63
Period size: 15 Copynumber: 2.2 Consensus size: 16
37837464 AATATTATTT
37837474 TTAAATTTAAACA-AA
1 TTAAATTTAAACATAA
37837489 TTAAATTTAAACATAA
1 TTAAATTTAAACATAA
37837505 TTAA
1 TTAA
37837509 TCCTTATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 13 0.68
16 6 0.32
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (16 bp):
TTAAATTTAAACATAA
Found at i:37837497 original size:21 final size:21
Alignment explanation
Indices: 37837473--37837542 Score: 63
Period size: 21 Copynumber: 3.3 Consensus size: 21
37837463 TAATATTATT
37837473 TTTAAATTTAAACAAATTAAA
1 TTTAAATTTAAACAAATTAAA
** ** *
37837494 TTTAAACAT-AATTAATCCT-TA
1 TTTAAATTTAAACAAAT--TAAA
37837515 TTTAAATTTAAACAAATTAAA
1 TTTAAATTTAAACAAATTAAA
37837536 TTTAAAT
1 TTTAAAT
37837543 ATAACGAATA
Statistics
Matches: 35, Mismatches: 10, Indels: 8
0.66 0.19 0.15
Matches are distributed among these distances:
20 6 0.17
21 23 0.66
22 6 0.17
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.41
Consensus pattern (21 bp):
TTTAAATTTAAACAAATTAAA
Found at i:37838797 original size:14 final size:14
Alignment explanation
Indices: 37838778--37838804 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
37838768 ACCAAAATAT
37838778 TGATTATTCATTAA
1 TGATTATTCATTAA
37838792 TGATTATTCATTA
1 TGATTATTCATTA
37838805 CGTGTCAATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.52
Consensus pattern (14 bp):
TGATTATTCATTAA
Found at i:37839414 original size:50 final size:50
Alignment explanation
Indices: 37839339--37839436 Score: 196
Period size: 50 Copynumber: 2.0 Consensus size: 50
37839329 GGGAAAACCT
37839339 ATATGTGTTGTTTGTGAATCATTTAATAAAGAACAAAAGTAACCCTACTA
1 ATATGTGTTGTTTGTGAATCATTTAATAAAGAACAAAAGTAACCCTACTA
37839389 ATATGTGTTGTTTGTGAATCATTTAATAAAGAACAAAAGTAACCCTAC
1 ATATGTGTTGTTTGTGAATCATTTAATAAAGAACAAAAGTAACCCTAC
37839437 ATTAGTATCT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.34
Consensus pattern (50 bp):
ATATGTGTTGTTTGTGAATCATTTAATAAAGAACAAAAGTAACCCTACTA
Found at i:37839886 original size:18 final size:18
Alignment explanation
Indices: 37839863--37839898 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
37839853 ACAGGATTGG
*
37839863 ATCAACCTCTGTGTAACT
1 ATCAACCTCTGTGCAACT
*
37839881 ATCAACCTGTGTGCAACT
1 ATCAACCTCTGTGCAACT
37839899 GTGAATCAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.31
Consensus pattern (18 bp):
ATCAACCTCTGTGCAACT
Found at i:37840884 original size:2 final size:2
Alignment explanation
Indices: 37840879--37840903 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
37840869 ATATATATAT
37840879 AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC A
37840904 TTCACGAGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:37841940 original size:21 final size:21
Alignment explanation
Indices: 37841916--37841985 Score: 79
Period size: 21 Copynumber: 3.3 Consensus size: 21
37841906 GGATATTACT
37841916 TTTAAATTTAAAAAAATTAAA
1 TTTAAATTTAAAAAAATTAAA
* ** *
37841937 TTTAAATGT-AATTAATCTTAA
1 TTTAAATTTAAAAAAAT-TAAA
*
37841958 TTTAAATTTAAACAAATTAAA
1 TTTAAATTTAAAAAAATTAAA
37841979 TTTAAAT
1 TTTAAAT
37841986 ATAATGGATA
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
20 5 0.13
21 29 0.74
22 5 0.13
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (21 bp):
TTTAAATTTAAAAAAATTAAA
Found at i:37853045 original size:22 final size:22
Alignment explanation
Indices: 37853019--37853066 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
37853009 CTAATGCATT
37853019 ATTCAGATCAAGAAGCCACCGC
1 ATTCAGATCAAGAAGCCACCGC
37853041 ATTCAGATCAAGAAGCCACCGC
1 ATTCAGATCAAGAAGCCACCGC
37853063 -TTCA
1 ATTCA
37853067 AACCGAAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 4 0.15
22 22 0.85
ACGTcount: A:0.35, C:0.31, G:0.17, T:0.17
Consensus pattern (22 bp):
ATTCAGATCAAGAAGCCACCGC
Found at i:37855937 original size:19 final size:18
Alignment explanation
Indices: 37855889--37855937 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
37855879 ACCAACACGA
37855889 TTCTTCAATTTCTCATCC
1 TTCTTCAATTTCTCATCC
* * *
37855907 GTGTTCATATTTTTCATCTC
1 TTCTTCA-ATTTCTCATC-C
37855927 TTCTTCAATTT
1 TTCTTCAATTT
37855938 GAACAAGTCT
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
18 5 0.21
19 13 0.54
20 6 0.25
ACGTcount: A:0.16, C:0.24, G:0.04, T:0.55
Consensus pattern (18 bp):
TTCTTCAATTTCTCATCC
Found at i:37859752 original size:17 final size:19
Alignment explanation
Indices: 37859722--37859758 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
37859712 ATTTCCCTAC
37859722 ACTATACAAAAAAAA-AAA
1 ACTATACAAAAAAAACAAA
*
37859740 ACTA-ACAACAAAAACAAA
1 ACTATACAAAAAAAACAAA
37859758 A
1 A
37859759 GCCTTAACCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.76, C:0.16, G:0.00, T:0.08
Consensus pattern (19 bp):
ACTATACAAAAAAAACAAA
Found at i:37859752 original size:18 final size:19
Alignment explanation
Indices: 37859722--37859758 Score: 51
Period size: 18 Copynumber: 2.0 Consensus size: 19
37859712 ATTTCCCTAC
37859722 ACTATACAAAAAAA-AAAA
1 ACTATACAAAAAAACAAAA
37859740 ACTA-ACAACAAAAACAAAA
1 ACTATACAA-AAAAACAAAA
37859759 GCCTTAACCT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
17 4 0.24
18 9 0.53
19 4 0.24
ACGTcount: A:0.76, C:0.16, G:0.00, T:0.08
Consensus pattern (19 bp):
ACTATACAAAAAAACAAAA
Found at i:37861046 original size:25 final size:26
Alignment explanation
Indices: 37861016--37861071 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 26
37861006 TGCGCAATCA
*
37861016 ATGCTTACATATCCCACATCTAATG-
1 ATGCTTACATATCCCACATATAATGC
* *
37861041 ATGCTTACGTATCCCATATATAATGC
1 ATGCTTACATATCCCACATATAATGC
37861067 ATGCT
1 ATGCT
37861072 CTTTATTCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 22 0.81
26 5 0.19
ACGTcount: A:0.30, C:0.25, G:0.11, T:0.34
Consensus pattern (26 bp):
ATGCTTACATATCCCACATATAATGC
Found at i:37862638 original size:17 final size:17
Alignment explanation
Indices: 37862596--37862630 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
37862586 CTTCTTCTTT
37862596 CTATTTATATTATTTAA
1 CTATTTATATTATTTAA
37862613 CTATTTATA-TATTTAA
1 CTATTTATATTATTTAA
37862629 CT
1 CT
37862631 GTTGTATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.34, C:0.09, G:0.00, T:0.57
Consensus pattern (17 bp):
CTATTTATATTATTTAA
Found at i:37862676 original size:7 final size:7
Alignment explanation
Indices: 37862664--37862708 Score: 54
Period size: 7 Copynumber: 6.3 Consensus size: 7
37862654 TATTTAACTA
37862664 TTTATAT
1 TTTATAT
37862671 TTTATAT
1 TTTATAT
*
37862678 ATTATATT
1 TTTATA-T
37862686 TTTATAT
1 TTTATAT
*
37862693 TTAATAT
1 TTTATAT
*
37862700 TTTAAAT
1 TTTATAT
37862707 TT
1 TT
37862709 AAATAGAAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
7 26 0.81
8 6 0.19
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (7 bp):
TTTATAT
Found at i:37862682 original size:14 final size:15
Alignment explanation
Indices: 37862662--37862703 Score: 61
Period size: 14 Copynumber: 2.9 Consensus size: 15
37862652 CGTATTTAAC
37862662 TATTTATATTTTATA
1 TATTTATATTTTATA
37862677 TA-TTATATTTT-TA
1 TATTTATATTTTATA
37862690 TATTTAATATTTTA
1 TATTT-ATATTTTA
37862704 AATTTAAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 4 0.17
14 11 0.46
15 9 0.38
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
TATTTATATTTTATA
Found at i:37862685 original size:28 final size:29
Alignment explanation
Indices: 37862645--37862703 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 29
37862635 TATAAAATCC
*
37862645 TATATATCGTA-TTTAACTATTT-ATATTT
1 TATATATCATATTTTAA-TATTTAATATTT
* *
37862673 TATATATTATATTTTTATATTTAATATTT
1 TATATATCATATTTTAATATTTAATATTT
37862702 TA
1 TA
37862704 AATTTAAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
28 14 0.54
29 12 0.46
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.61
Consensus pattern (29 bp):
TATATATCATATTTTAATATTTAATATTT
Found at i:37862690 original size:22 final size:22
Alignment explanation
Indices: 37862664--37862708 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
37862654 TATTTAACTA
* *
37862664 TTTATATTTTATATATTATATT
1 TTTATATTTAATATATTAAATT
*
37862686 TTTATATTTAATATTTTAAATT
1 TTTATATTTAATATATTAAATT
37862708 T
1 T
37862709 AAATAGAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (22 bp):
TTTATATTTAATATATTAAATT
Found at i:37862710 original size:14 final size:13
Alignment explanation
Indices: 37862662--37862709 Score: 60
Period size: 14 Copynumber: 3.5 Consensus size: 13
37862652 CGTATTTAAC
37862662 TATTTATATTTTA
1 TATTTATATTTTA
37862675 TATATTATATTTTTA
1 TAT-TTATA-TTTTA
37862690 TATTTAATATTTTA
1 TATTT-ATATTTTA
*
37862704 AATTTA
1 TATTTA
37862710 AATAGAAATA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
13 4 0.13
14 16 0.52
15 11 0.35
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (13 bp):
TATTTATATTTTA
Found at i:37862713 original size:15 final size:15
Alignment explanation
Indices: 37862667--37862713 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
37862657 TTAACTATTT
*
37862667 ATATTTTATATATTAT
1 ATATTTTATAT-TTAA
37862683 AT-TTTTATATTT-A
1 ATATTTTATATTTAA
*
37862696 ATATTTTAAATTTAA
1 ATATTTTATATTTAA
37862711 ATA
1 ATA
37862714 GAAATAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
13 2 0.07
14 11 0.41
15 12 0.44
16 2 0.07
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (15 bp):
ATATTTTATATTTAA
Found at i:37869328 original size:21 final size:21
Alignment explanation
Indices: 37869304--37869343 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
37869294 TACAAAATTA
*
37869304 TCAACCATAGTTACAAAAAGG
1 TCAACCATACTTACAAAAAGG
**
37869325 TCAACTTTACTTACAAAAA
1 TCAACCATACTTACAAAAA
37869344 TATAAACTTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.47, C:0.20, G:0.07, T:0.25
Consensus pattern (21 bp):
TCAACCATACTTACAAAAAGG
Found at i:37871195 original size:25 final size:24
Alignment explanation
Indices: 37871167--37871222 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 24
37871157 ATAATAAGTT
37871167 TAAATCTTACTAATAATTATAA-TAA
1 TAAATCTT-C-AATAATTATAAGTAA
* *
37871192 TAAATATTCAATAATTGTAATGTAA
1 TAAATCTTCAATAATTATAA-GTAA
37871217 TAAATC
1 TAAATC
37871223 ATATTTATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 10 0.38
24 1 0.04
25 15 0.58
ACGTcount: A:0.50, C:0.07, G:0.04, T:0.39
Consensus pattern (24 bp):
TAAATCTTCAATAATTATAAGTAA
Found at i:37873531 original size:31 final size:31
Alignment explanation
Indices: 37873495--37873556 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
37873485 AATATATATT
* * *
37873495 GTAGCATTGTATTATTGTTTGTTGCTTAAAA
1 GTAGCATTGCATTATTGATTATTGCTTAAAA
37873526 GTAGCATTGCATTATTGATTATTGCTTAAAA
1 GTAGCATTGCATTATTGATTATTGCTTAAAA
37873557 TTGCACCAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.29, C:0.08, G:0.18, T:0.45
Consensus pattern (31 bp):
GTAGCATTGCATTATTGATTATTGCTTAAAA
Found at i:37878729 original size:18 final size:18
Alignment explanation
Indices: 37878708--37878742 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
37878698 ATACATATAT
37878708 ATATATATATGCTCGTAC
1 ATATATATATGCTCGTAC
37878726 ATATATATATGCTCGTA
1 ATATATATATGCTCGTA
37878743 AAATCAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.34, C:0.14, G:0.11, T:0.40
Consensus pattern (18 bp):
ATATATATATGCTCGTAC
Found at i:37883271 original size:2 final size:2
Alignment explanation
Indices: 37883256--37883290 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
37883246 ATGAGAGAGA
* *
37883256 AT AT AC AT AA AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
37883291 CACGTGGCTA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (2 bp):
AT
Found at i:37883643 original size:18 final size:18
Alignment explanation
Indices: 37883605--37883644 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
37883595 ATTAATTATG
*
37883605 TTAATTGTGTTATCATGT
1 TTAATTGTGTTATCATAT
*
37883623 TTAATTGTGTTATCGTAT
1 TTAATTGTGTTATCATAT
37883641 TTAA
1 TTAA
37883645 ATATGTATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.25, C:0.05, G:0.15, T:0.55
Consensus pattern (18 bp):
TTAATTGTGTTATCATAT
Found at i:37883837 original size:17 final size:17
Alignment explanation
Indices: 37883805--37883837 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
37883795 TATTAAATTT
37883805 TGTTTTGTTATATTTGA
1 TGTTTTGTTATATTTGA
37883822 TGTTCTTGTTAT-TTTG
1 TGTT-TTGTTATATTTG
37883838 TTTTGTTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.12, C:0.03, G:0.18, T:0.67
Consensus pattern (17 bp):
TGTTTTGTTATATTTGA
Found at i:37891142 original size:25 final size:27
Alignment explanation
Indices: 37891087--37891144 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 27
37891077 ACATGAATTC
37891087 GAATTATGTAAGTAGACATACGTCACTTT
1 GAATTATGTAAGTAGACATA--TCACTTT
*
37891116 GAATTATGTAAGTATACAT-TCAC-TT
1 GAATTATGTAAGTAGACATATCACTTT
37891141 GAAT
1 GAAT
37891145 ACATTTAGTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 6 0.21
26 4 0.14
29 18 0.64
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (27 bp):
GAATTATGTAAGTAGACATATCACTTT
Found at i:37904053 original size:21 final size:21
Alignment explanation
Indices: 37904027--37904073 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
37904017 AACTGCCAAG
* *
37904027 GAAGAGAGGGTCCAGGAGGAA
1 GAAGAGAAGGTACAGGAGGAA
37904048 GAAGAGAAGGTACAGGAGGAA
1 GAAGAGAAGGTACAGGAGGAA
37904069 GAAGA
1 GAAGA
37904074 AAATCCTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.45, C:0.06, G:0.45, T:0.04
Consensus pattern (21 bp):
GAAGAGAAGGTACAGGAGGAA
Found at i:37908774 original size:2 final size:2
Alignment explanation
Indices: 37908769--37908797 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
37908759 ACCCCCACCA
37908769 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
37908798 AGACAACTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:37914011 original size:12 final size:14
Alignment explanation
Indices: 37913991--37914027 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
37913981 TATTTAATTT
37913991 TTTATTATTTTTA-A
1 TTTA-TATTTTTATA
37914005 -TTATATTTTTATA
1 TTTATATTTTTATA
37914018 TTTATATTTT
1 TTTATATTTT
37914028 CAATCAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 8 0.38
13 4 0.19
14 9 0.43
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (14 bp):
TTTATATTTTTATA
Found at i:37919051 original size:3 final size:3
Alignment explanation
Indices: 37919043--37919074 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
37919033 TGTTGAAACG
*
37919043 ATA ATA ATA ATA ATA ATA ATA TTA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
37919075 TTTCTTTTAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
ATA
Found at i:37919846 original size:14 final size:14
Alignment explanation
Indices: 37919827--37919854 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
37919817 ATATTCATAG
37919827 TAATAATTAAAAAA
1 TAATAATTAAAAAA
37919841 TAATAATTAAAAAA
1 TAATAATTAAAAAA
37919855 CAGAAGGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (14 bp):
TAATAATTAAAAAA
Found at i:37925492 original size:2 final size:2
Alignment explanation
Indices: 37925485--37925521 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
37925475 TTCCTTATCC
37925485 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C- CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
37925522 TAACTCCTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:37931230 original size:27 final size:27
Alignment explanation
Indices: 37931178--37931230 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
37931168 TCAGCAAAAG
* *
37931178 GGAATTACTTCAAATTCATAGCCTCAT
1 GGAATTACTTCAAACTCATAACCTCAT
*
37931205 GGAATTACTTCAAACTCATAATCTCA
1 GGAATTACTTCAAACTCATAACCTCA
37931231 AGAGCCAAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.36, C:0.23, G:0.09, T:0.32
Consensus pattern (27 bp):
GGAATTACTTCAAACTCATAACCTCAT
Found at i:37932203 original size:2 final size:2
Alignment explanation
Indices: 37932196--37932227 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
37932186 ATCAAAATCT
37932196 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
37932228 GATGAAATCG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:37941644 original size:95 final size:95
Alignment explanation
Indices: 37941530--37941720 Score: 346
Period size: 95 Copynumber: 2.0 Consensus size: 95
37941520 TTTCAAAATG
37941530 AAAAATTAACATATCTATTTACAAAGAATTTAGCAAACATGAAATAAATGTGATACTTGTTTTGA
1 AAAAATTAACATATCTATTTACAAAGAATTTAGCAAACATGAAATAAATGTGATACTTGTTTTGA
37941595 TGAGATTGTGAACTTATATACACCAAAGAT
66 TGAGATTGTGAACTTATATACACCAAAGAT
* *
37941625 AAAAATTAACATATCTATTTACAAAGAATTTATCAAACATGAAATAAATGTGATATTTGTTTTGA
1 AAAAATTAACATATCTATTTACAAAGAATTTAGCAAACATGAAATAAATGTGATACTTGTTTTGA
* *
37941690 TGGGATTGTGAACTTATATACGCCAAAGAT
66 TGAGATTGTGAACTTATATACACCAAAGAT
37941720 A
1 A
37941721 GCATAAATAA
Statistics
Matches: 92, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
95 92 1.00
ACGTcount: A:0.43, C:0.10, G:0.13, T:0.34
Consensus pattern (95 bp):
AAAAATTAACATATCTATTTACAAAGAATTTAGCAAACATGAAATAAATGTGATACTTGTTTTGA
TGAGATTGTGAACTTATATACACCAAAGAT
Found at i:37942456 original size:21 final size:22
Alignment explanation
Indices: 37942419--37942461 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
37942409 ATTTTATGAT
*
37942419 TTAATTTATAAATTAAA-ATTA
1 TTAATTTATAAAGTAAAGATTA
37942440 TTAATTTGAT-AAGTAAAGATTA
1 TTAATTT-ATAAAGTAAAGATTA
37942462 AACACATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (22 bp):
TTAATTTATAAAGTAAAGATTA
Found at i:37942541 original size:22 final size:22
Alignment explanation
Indices: 37942498--37942549 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
37942488 AATATTATTG
**
37942498 ATAATTAAATTATTAATCTTAT
1 ATAATTAAATTATTAAAATTAT
37942520 ATAATTAAA-TATATAAAATTAT
1 ATAATTAAATTAT-TAAAATTAT
37942542 -TAAATTAA
1 AT-AATTAA
37942550 TTAAAATTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
21 4 0.15
22 22 0.85
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (22 bp):
ATAATTAAATTATTAAAATTAT
Found at i:37945515 original size:24 final size:23
Alignment explanation
Indices: 37945471--37945517 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
37945461 TTTTTATTTT
*
37945471 ATTTTATCTTTTAAATGTTAATA
1 ATTTTATCTTTTAAATATTAATA
*
37945494 ATTTATATTTTTTAAATATTAATA
1 ATTT-TATCTTTTAAATATTAATA
37945518 GTTGATTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 4 0.19
24 17 0.81
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (23 bp):
ATTTTATCTTTTAAATATTAATA
Found at i:37945677 original size:20 final size:20
Alignment explanation
Indices: 37945632--37945686 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
37945622 TTTATTTTTT
*
37945632 AAATATTAATAATTTATATA
1 AAATATTAATAATTGATATA
* *
37945652 ATATATTTATAATTGAT-TGA
1 AAATATTAATAATTGATAT-A
37945672 AAATATTAATAATTG
1 AAATATTAATAATTG
37945687 GTAATTTAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
19 1 0.03
20 28 0.97
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.45
Consensus pattern (20 bp):
AAATATTAATAATTGATATA
Found at i:37945761 original size:51 final size:51
Alignment explanation
Indices: 37945665--37945767 Score: 122
Period size: 51 Copynumber: 2.0 Consensus size: 51
37945655 TATTTATAAT
* *
37945665 TGATTGAAAATATTAATAATTGGTAATTTAATTTATAATTTAAATATTATTA
1 TGATTGAAAATATTAATAATTGGTAATTTAATTTAAAATTAAAATATT-TTA
* *
37945717 TGATT-AAAATATTAATACTT-TTAA-TTAATTTTAAAATTCAAAATATTTTA
1 TGATTGAAAATATTAATAATTGGTAATTTAA-TTTAAAATT-AAAATATTTTA
37945767 T
1 T
37945768 AATATATAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
49 4 0.09
50 15 0.33
51 21 0.47
52 5 0.11
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.49
Consensus pattern (51 bp):
TGATTGAAAATATTAATAATTGGTAATTTAATTTAAAATTAAAATATTTTA
Found at i:37945788 original size:29 final size:29
Alignment explanation
Indices: 37945747--37945804 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
37945737 TTAATTAATT
37945747 TTAAAATTCAAAA-TATTTTATAATATATAA
1 TTAAAATTCAAAACT-TTTTATAATA-ATAA
*
37945777 TTAAAATT-AAAACTTTTTATTATAATAA
1 TTAAAATTCAAAACTTTTTATAATAATAA
37945805 GATTTATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
28 4 0.15
29 13 0.50
30 9 0.35
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (29 bp):
TTAAAATTCAAAACTTTTTATAATAATAA
Done.