Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39371879
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2227820 characters in sequence are not A, C, G, or T
File 22 of 103
Found at i:8145412 original size:18 final size:17
Alignment explanation
Indices: 8145386--8145427 Score: 66
Period size: 18 Copynumber: 2.4 Consensus size: 17
8145376 TTAACTATTT
*
8145386 TTATCATTATTATTTTAA
1 TTATTATTATTATTTT-A
8145404 TTATTATTATTATTTTA
1 TTATTATTATTATTTTA
8145421 TTATTAT
1 TTATTAT
8145428 ATCCTTTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 8 0.35
18 15 0.65
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (17 bp):
TTATTATTATTATTTTA
Found at i:8145596 original size:5 final size:5
Alignment explanation
Indices: 8145582--8145647 Score: 75
Period size: 5 Copynumber: 13.4 Consensus size: 5
8145572 GTGAACAAAA
* *
8145582 ATTTT A-TTT ATTTT ATTTT CTTATT -TTAT ATTTT ATTTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATT-TT ATTTT ATTTT A-TTTT ATTTT ATTTT
8145632 ATTTT ATTTT -TTTT AT
1 ATTTT ATTTT ATTTT AT
8145648 AAACAATCTT
Statistics
Matches: 53, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
4 9 0.17
5 37 0.70
6 7 0.13
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.79
Consensus pattern (5 bp):
ATTTT
Found at i:8145978 original size:8 final size:8
Alignment explanation
Indices: 8145962--8146055 Score: 50
Period size: 8 Copynumber: 11.6 Consensus size: 8
8145952 ATGCCATATC
*
8145962 TATTGTTT
1 TATTTTTT
8145970 TATTTTTT
1 TATTTTTT
8145978 TATTATTGTT
1 TATT-TT-TT
*
8145988 T-TATTATT
1 TAT-TTTTT
8145996 TATTTATTT
1 TATTT-TTT
**
8146005 T-TAATTT
1 TATTTTTT
**
8146012 TATTTCAT
1 TATTTTTT
*
8146020 TATTGTTT
1 TATTTTTT
8146028 TATTTTTT
1 TATTTTTT
*
8146036 TA-TTTGT
1 TATTTTTT
8146043 TATTTTTT
1 TATTTTTT
*
8146051 AATTT
1 TATTT
8146056 ATTGTATAAT
Statistics
Matches: 63, Mismatches: 16, Indels: 14
0.68 0.17 0.15
Matches are distributed among these distances:
7 10 0.16
8 41 0.65
9 8 0.13
10 4 0.06
ACGTcount: A:0.19, C:0.01, G:0.04, T:0.76
Consensus pattern (8 bp):
TATTTTTT
Found at i:8146271 original size:13 final size:13
Alignment explanation
Indices: 8146245--8146293 Score: 55
Period size: 13 Copynumber: 3.7 Consensus size: 13
8146235 AGTGTCATGG
*
8146245 TATA-TTATTATT
1 TATATTTATTTTT
8146257 TATATTTATTTTT
1 TATATTTATTTTT
8146270 TATATTTTTATTTTT
1 TATA--TTTATTTTT
*
8146285 TATTTTTAT
1 TATATTTAT
8146294 ATATTTTTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
12 4 0.12
13 16 0.50
15 12 0.38
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (13 bp):
TATATTTATTTTT
Found at i:8146279 original size:8 final size:7
Alignment explanation
Indices: 8146261--8146302 Score: 57
Period size: 7 Copynumber: 5.6 Consensus size: 7
8146251 ATTATTTATA
8146261 TTTATTT
1 TTTATTT
8146268 TTTATATT
1 TTTAT-TT
8146276 TTTATTT
1 TTTATTT
8146283 TTTATTT
1 TTTATTT
8146290 TTATATATT
1 TT-TAT-TT
8146299 TTTA
1 TTTA
8146303 AGAGTTACTT
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
7 16 0.50
8 12 0.38
9 4 0.12
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (7 bp):
TTTATTT
Found at i:8146281 original size:15 final size:15
Alignment explanation
Indices: 8146249--8146302 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
8146239 TCATGGTATA
*
8146249 TTATTATTTATA--T
1 TTATTTTTTATATTT
8146262 TTATTTTTTATATTT
1 TTATTTTTTATATTT
8146277 TTATTTTTTAT-TTT
1 TTATTTTTTATATTT
8146291 TATATATTTTTA
1 T-TAT-TTTTTA
8146303 AGAGTTACTT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
13 11 0.31
14 4 0.11
15 15 0.42
16 6 0.17
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (15 bp):
TTATTTTTTATATTT
Found at i:8161426 original size:12 final size:12
Alignment explanation
Indices: 8161406--8161437 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
8161396 TTTTTTTAAC
8161406 CCAAAACCGAAA
1 CCAAAACCGAAA
*
8161418 CCGAAACCGAAA
1 CCAAAACCGAAA
8161430 CCAAAACC
1 CCAAAACC
8161438 AAAATCCCGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.53, C:0.38, G:0.09, T:0.00
Consensus pattern (12 bp):
CCAAAACCGAAA
Found at i:8164903 original size:6 final size:6
Alignment explanation
Indices: 8164892--8164917 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
8164882 CCTTCATCAT
8164892 GAGCCA GAGCCA GAGCCA GAGCCA GA
1 GAGCCA GAGCCA GAGCCA GAGCCA GA
8164918 CCTGAGAACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.31, G:0.35, T:0.00
Consensus pattern (6 bp):
GAGCCA
Found at i:8170600 original size:5 final size:6
Alignment explanation
Indices: 8170573--8170597 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
8170563 GACGATTACG
8170573 TTATTT TTATTT TTATTT TTATTT T
1 TTATTT TTATTT TTATTT TTATTT T
8170598 ATTCGGGATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTATTT
Found at i:8170994 original size:2 final size:2
Alignment explanation
Indices: 8170982--8171031 Score: 91
Period size: 2 Copynumber: 25.0 Consensus size: 2
8170972 GGGAGTTTGG
*
8170982 AT AT CT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8171024 AT AT AT AT
1 AT AT AT AT
8171032 GTATTTAACA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8180576 original size:18 final size:18
Alignment explanation
Indices: 8180555--8180618 Score: 67
Period size: 18 Copynumber: 3.6 Consensus size: 18
8180545 ATATACACAT
8180555 TTAAACACGATAACACGA
1 TTAAACACGATAACACGA
* * * * *
8180573 TTAAACATGTTTATACGT
1 TTAAACACGATAACACGA
*
8180591 TTAAATACGATAACACGA
1 TTAAACACGATAACACGA
8180609 TT-AACACGAT
1 TTAAACACGAT
8180619 TAATTAAACG
Statistics
Matches: 34, Mismatches: 12, Indels: 1
0.72 0.26 0.02
Matches are distributed among these distances:
17 7 0.21
18 27 0.79
ACGTcount: A:0.44, C:0.17, G:0.11, T:0.28
Consensus pattern (18 bp):
TTAAACACGATAACACGA
Found at i:8184981 original size:6 final size:6
Alignment explanation
Indices: 8184970--8184994 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
8184960 TACGTCTATA
8184970 TATGTG TATGTG TATGTG TATGTG T
1 TATGTG TATGTG TATGTG TATGTG T
8184995 TCCTTATCGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.32, T:0.52
Consensus pattern (6 bp):
TATGTG
Found at i:8194653 original size:2 final size:2
Alignment explanation
Indices: 8194646--8194675 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
8194636 GACCAAGAAG
8194646 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
8194676 AAACAAACCC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:8197911 original size:46 final size:46
Alignment explanation
Indices: 8197861--8197959 Score: 119
Period size: 46 Copynumber: 2.2 Consensus size: 46
8197851 CATTCTCCAC
*
8197861 CAATTAGAAG-AAATACTTGCTTCCAATTAATAATTTACTCCCTAAT
1 CAATTAGAAGTAAAT-CTTGCTTCCAATTAATAATTCACTCCCTAAT
* * * * *
8197907 CAATTAGGAGTAGATGTTGCTTCCAATTGATAATTCACTCCTTAAT
1 CAATTAGAAGTAAATCTTGCTTCCAATTAATAATTCACTCCCTAAT
*
8197953 CACTTAG
1 CAATTAG
8197960 TAGATCAAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
46 42 0.93
47 3 0.07
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.35
Consensus pattern (46 bp):
CAATTAGAAGTAAATCTTGCTTCCAATTAATAATTCACTCCCTAAT
Found at i:8198509 original size:26 final size:28
Alignment explanation
Indices: 8198473--8198533 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
8198463 CTACTGCTTA
8198473 GCTTCTTTCC-AACTACAA-TTTTTTTG
1 GCTTCTTTCCAAACTACAATTTTTTTTG
* **
8198499 GCTTCTTTCCAAATTGTAATTTTTTTTG
1 GCTTCTTTCCAAACTACAATTTTTTTTG
8198527 GCTTCTT
1 GCTTCTT
8198534 ATTGCAATCT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 5 0.17
28 15 0.50
ACGTcount: A:0.16, C:0.20, G:0.10, T:0.54
Consensus pattern (28 bp):
GCTTCTTTCCAAACTACAATTTTTTTTG
Found at i:8202668 original size:10 final size:9
Alignment explanation
Indices: 8202655--8202850 Score: 81
Period size: 9 Copynumber: 20.3 Consensus size: 9
8202645 AATAAAAAAT
*
8202655 AAAAAAGGA
1 AAAAAAAGA
8202664 AAAAAAAG-
1 AAAAAAAGA
*
8202672 AAAAAATGA
1 AAAAAAAGA
8202681 GAAAAAAAGA
1 -AAAAAAAGA
8202691 AAAAAAAGA
1 AAAAAAAGA
*
8202700 AAAAGAAGAA
1 AAAAAAAG-A
8202710 AAAGGAAAAGA
1 AAA--AAAAGA
* * *
8202721 GAAAGAGGA
1 AAAAAAAGA
*
8202730 ACAAAAAGA
1 AAAAAAAGA
*
8202739 AAAAGATAGA
1 AAAA-AAAGA
*
8202749 TAAAAAAGA
1 AAAAAAAGA
* *
8202758 GAGAAAAATA
1 -AAAAAAAGA
8202768 AAAGAAAAGGGA
1 AAA-AAAA--GA
8202780 AAAGATAAA-A
1 AAA-A-AAAGA
* *
8202790 AAGAAAGGAA
1 AAAAAAAG-A
8202800 AAAATAAAGA
1 AAAA-AAAGA
* **
8202810 AACAAATTA
1 AAAAAAAGA
*
8202819 AAAAAAGAAA
1 AAAAAA-AGA
8202829 AAAAATAAGA
1 AAAAA-AAGA
*
8202839 AAGAAAAGA
1 AAAAAAAGA
8202848 AAA
1 AAA
8202851 TCTTGTGTTT
Statistics
Matches: 137, Mismatches: 34, Indels: 32
0.67 0.17 0.16
Matches are distributed among these distances:
8 9 0.07
9 56 0.41
10 52 0.38
11 7 0.05
12 10 0.07
13 3 0.02
ACGTcount: A:0.77, C:0.01, G:0.18, T:0.05
Consensus pattern (9 bp):
AAAAAAAGA
Found at i:8202668 original size:17 final size:16
Alignment explanation
Indices: 8202648--8202803 Score: 75
Period size: 19 Copynumber: 9.3 Consensus size: 16
8202638 AAGAAATAAT
*
8202648 AAAAAATAAAAAAGGA
1 AAAAAAAAAAAAAGGA
8202664 AAAAAAAGAAAAAATGAGA
1 AAAAAAA-AAAAAA-G-GA
*
8202683 AAAAAAGAAAAAAAAGA
1 AAAAAA-AAAAAAAGGA
* *
8202700 AAAAGAAGAAAAAGG-
1 AAAAAAAAAAAAAGGA
* * *
8202715 -AAAAGAGAAAGAGGA
1 AAAAAAAAAAAAAGGA
* *
8202730 ACAAAAAGAAAAA-GA
1 AAAAAAAAAAAAAGGA
* * * *
8202745 TAGATAAAAAAGAGAGA
1 AAAAAAAAAAAAAG-GA
*
8202762 AAAATAAAAGAAAAGGGA
1 AAAA-AAAA-AAAAAGGA
8202780 AAAGATAAAAAAGAAAGGA
1 AAA-A-AAAAAA-AAAGGA
8202799 AAAAA
1 AAAAA
8202804 TAAAGAAACA
Statistics
Matches: 105, Mismatches: 23, Indels: 23
0.70 0.15 0.15
Matches are distributed among these distances:
14 11 0.10
15 9 0.09
16 22 0.21
17 18 0.17
18 12 0.11
19 32 0.30
20 1 0.01
ACGTcount: A:0.76, C:0.01, G:0.19, T:0.04
Consensus pattern (16 bp):
AAAAAAAAAAAAAGGA
Found at i:8202693 original size:23 final size:23
Alignment explanation
Indices: 8202663--8202741 Score: 65
Period size: 23 Copynumber: 3.4 Consensus size: 23
8202653 ATAAAAAAGG
8202663 AAAA-AAAAGAAAAAATGAGAA-A
1 AAAAGAAAAGAAAAAA-GAGAACA
* * *
8202685 AAAAGAAAAAAAAGAAAAAGAAGA
1 AAAAGAAAAGAAA-AAAGAGAACA
*
8202709 AAAAGGAAAAG-AGAAAGAGGAACA
1 AAAA-GAAAAGAAAAAAGA-GAACA
8202733 AAAAGAAAA
1 AAAAGAAAA
8202742 AGATAGATAA
Statistics
Matches: 46, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
22 4 0.09
23 20 0.43
24 17 0.37
25 5 0.11
ACGTcount: A:0.78, C:0.01, G:0.19, T:0.01
Consensus pattern (23 bp):
AAAAGAAAAGAAAAAAGAGAACA
Found at i:8202729 original size:14 final size:15
Alignment explanation
Indices: 8202685--8202743 Score: 66
Period size: 15 Copynumber: 3.9 Consensus size: 15
8202675 AAATGAGAAA
* *
8202685 AAAAGAAAAAAAAGA
1 AAAAGAAGAAAAAGG
8202700 AAAAGAAGAAAAAGG
1 AAAAGAAGAAAAAGG
*
8202715 AAAAG-AGAAAGAGG
1 AAAAGAAGAAAAAGG
*
8202729 AACAAAAAGAAAAAG
1 AA-AAGAAGAAAAAG
8202744 ATAGATAAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
14 10 0.27
15 20 0.54
16 7 0.19
ACGTcount: A:0.76, C:0.02, G:0.22, T:0.00
Consensus pattern (15 bp):
AAAAGAAGAAAAAGG
Found at i:8202849 original size:9 final size:8
Alignment explanation
Indices: 8202648--8202845 Score: 82
Period size: 8 Copynumber: 23.4 Consensus size: 8
8202638 AAGAAATAAT
*
8202648 AAAAAATA
1 AAAAAAGA
*
8202656 AAAAAGGAA
1 AAAAAAG-A
8202665 AAAAAAGA
1 AAAAAAGA
8202673 AAAAATGAGA
1 AAAAA--AGA
8202683 AAAAAAGA
1 AAAAAAGA
8202691 AAAAAA-A
1 AAAAAAGA
*
8202698 GAAAAAGA
1 AAAAAAGA
*
8202706 AGAAAAAGG
1 A-AAAAAGA
*
8202715 AAAAGAG-
1 AAAAAAGA
* *
8202722 AAAGAGGA
1 AAAAAAGA
8202730 ACAAAAAGA
1 A-AAAAAGA
8202739 AAAAGATAGA
1 AAAA-A-AGA
8202749 TAAAAAAGA
1 -AAAAAAGA
*
8202758 GAGAAAAATA
1 -A-AAAAAGA
8202768 AAAGAAA-A
1 AAA-AAAGA
**
8202776 GGGAAAAGA
1 -AAAAAAGA
8202785 TAAAAAAGA
1 -AAAAAAGA
*
8202794 AAGGAAA-A
1 AA-AAAAGA
*
8202802 AATAAAGA
1 AAAAAAGA
**
8202810 AACAAATTA
1 AA-AAAAGA
8202819 AAAAAAGA
1 AAAAAAGA
8202827 AAAAAA-A
1 AAAAAAGA
*
8202834 TAAGAAAGA
1 -AAAAAAGA
8202843 AAA
1 AAA
8202846 GAAAATCTTG
Statistics
Matches: 143, Mismatches: 28, Indels: 38
0.68 0.13 0.18
Matches are distributed among these distances:
7 14 0.10
8 61 0.43
9 46 0.32
10 18 0.13
11 4 0.03
ACGTcount: A:0.77, C:0.01, G:0.17, T:0.05
Consensus pattern (8 bp):
AAAAAAGA
Found at i:8205892 original size:71 final size:70
Alignment explanation
Indices: 8205794--8205967 Score: 188
Period size: 71 Copynumber: 2.4 Consensus size: 70
8205784 TTAATTGTTT
* * * * * *
8205794 ATTTAATTAATTAAGCCAAATATCTTAATTAAAC-AATTCAATTAATTAAGCCTAACAATTTATT
1 ATTTAATTAATTAGGCCCAATA-CTTAATTAAACAAATTCAATCAATTAAGCCCAACAACTTAAT
8205858 TAAACA
65 TAAACA
* * * **
8205864 ATTTTAATCAATTAGGCCCAATGACTTAATTAAACAAATTTAATCAATTAGGCCCAATGACTTAA
1 A-TTTAATTAATTAGGCCCAAT-ACTTAATTAAACAAATTCAATCAATTAAGCCCAACAACTTAA
*
8205929 TTAAATA
64 TTAAACA
*
8205936 ATTTAATTAATTAGGCCCAATAATTTAATTAA
1 ATTTAATTAATTAGGCCCAAT-ACTTAATTAA
8205968 TTAGGCACAA
Statistics
Matches: 86, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
70 1 0.01
71 56 0.65
72 29 0.34
ACGTcount: A:0.45, C:0.13, G:0.06, T:0.36
Consensus pattern (70 bp):
ATTTAATTAATTAGGCCCAATACTTAATTAAACAAATTCAATCAATTAAGCCCAACAACTTAATT
AAACA
Found at i:8205897 original size:36 final size:35
Alignment explanation
Indices: 8205794--8205967 Score: 195
Period size: 35 Copynumber: 4.9 Consensus size: 35
8205784 TTAATTGTTT
* * *
8205794 ATTTAATTAATTAAGCCAAATATCTTAATTAAACA
1 ATTTAATTAATTAGGCCCAATAACTTAATTAAACA
* * * * * *
8205829 ATTCAATTAATTAAGCCTAACAATTTATTTAAACA
1 ATTTAATTAATTAGGCCCAATAACTTAATTAAACA
* *
8205864 ATTTTAATCAATTAGGCCCAATGACTTAATTAAACAA
1 A-TTTAATTAATTAGGCCCAATAACTTAATTAAAC-A
* * *
8205901 ATTTAATCAATTAGGCCCAATGACTTAATTAAATA
1 ATTTAATTAATTAGGCCCAATAACTTAATTAAACA
*
8205936 ATTTAATTAATTAGGCCCAATAATTTAATTAA
1 ATTTAATTAATTAGGCCCAATAACTTAATTAA
8205968 TTAGGCACAA
Statistics
Matches: 119, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
35 60 0.50
36 57 0.48
37 2 0.02
ACGTcount: A:0.45, C:0.13, G:0.06, T:0.36
Consensus pattern (35 bp):
ATTTAATTAATTAGGCCCAATAACTTAATTAAACA
Found at i:8205960 original size:22 final size:22
Alignment explanation
Indices: 8205932--8205973 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
8205922 GACTTAATTA
8205932 AATAATTTAATTAATTAGGCCC
1 AATAATTTAATTAATTAGGCCC
8205954 AATAATTTAATTAATTAGGC
1 AATAATTTAATTAATTAGGC
8205974 ACAACTTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.43, C:0.10, G:0.10, T:0.38
Consensus pattern (22 bp):
AATAATTTAATTAATTAGGCCC
Found at i:8207505 original size:20 final size:20
Alignment explanation
Indices: 8207480--8207518 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
8207470 TCAAAAACTG
8207480 ATACTTGCAATAGTTGGCTA
1 ATACTTGCAATAGTTGGCTA
8207500 ATACTTGCAATAGTTGGCT
1 ATACTTGCAATAGTTGGCT
8207519 CATTTACTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.36
Consensus pattern (20 bp):
ATACTTGCAATAGTTGGCTA
Found at i:8210904 original size:12 final size:13
Alignment explanation
Indices: 8210874--8210909 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
8210864 ATATTTGAGG
*
8210874 TTATTATTATTTA
1 TTATAATTATTTA
8210887 TTATAATTATTT-
1 TTATAATTATTTA
8210899 TTATAATTATT
1 TTATAATTATT
8210910 GATTTTAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (13 bp):
TTATAATTATTTA
Found at i:8211095 original size:25 final size:24
Alignment explanation
Indices: 8211067--8211117 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
8211057 CGTGTTAGTT
8211067 GTATCATGT-TACATAGTTATTAAAC
1 GTATCA-GTATACATA-TTATTAAAC
* *
8211092 GTATTAGTATACATATTTTTAAAC
1 GTATCAGTATACATATTATTAAAC
8211116 GT
1 GT
8211118 TGACATAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 12 0.52
25 11 0.48
ACGTcount: A:0.35, C:0.10, G:0.12, T:0.43
Consensus pattern (24 bp):
GTATCAGTATACATATTATTAAAC
Found at i:8215672 original size:37 final size:37
Alignment explanation
Indices: 8215604--8215675 Score: 108
Period size: 37 Copynumber: 1.9 Consensus size: 37
8215594 AAGCATTTGG
* * **
8215604 TGGAGGTTCAAATCACTCACAGTGTTGAAGCAACTAA
1 TGGAGGTTCAAATCACGCACAATGTCAAAGCAACTAA
8215641 TGGAGGTTCAAATCACGCACAATGTCAAAGCAACT
1 TGGAGGTTCAAATCACGCACAATGTCAAAGCAACT
8215676 GGCGAAAGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.22
Consensus pattern (37 bp):
TGGAGGTTCAAATCACGCACAATGTCAAAGCAACTAA
Found at i:8215687 original size:37 final size:37
Alignment explanation
Indices: 8215537--8215695 Score: 106
Period size: 37 Copynumber: 4.3 Consensus size: 37
8215527 TGATGGAGAG
* * *
8215537 TCAAATCACGCATAGTGCCAAAGCAACTGGC-AAAGGT
1 TCAAATCACGCACAATGTCAAAGCAACTGGCGAAA-GT
* * * ** * * *
8215574 TCTAATCAAGCACGGA-GTCAAAGCATTTGGTGGAGGT
1 TCAAATCACGCAC-AATGTCAAAGCAACTGGCGAAAGT
* * ** *** * *
8215611 TCAAATCACTCACAGTGTTGAAGCAACTAATGGAGGT
1 TCAAATCACGCACAATGTCAAAGCAACTGGCGAAAGT
8215648 TCAAATCACGCACAATGTCAAAGCAACTGGCGAAAGT
1 TCAAATCACGCACAATGTCAAAGCAACTGGCGAAAGT
8215685 TCAAATCACGC
1 TCAAATCACGC
8215696 TTAGTACCAA
Statistics
Matches: 88, Mismatches: 31, Indels: 6
0.70 0.25 0.05
Matches are distributed among these distances:
37 87 0.99
38 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (37 bp):
TCAAATCACGCACAATGTCAAAGCAACTGGCGAAAGT
Found at i:8239064 original size:35 final size:34
Alignment explanation
Indices: 8239000--8239149 Score: 160
Period size: 35 Copynumber: 4.3 Consensus size: 34
8238990 TTAATTGTTT
*
8239000 AATTTAATCAATTAGGCCCAATAACTTAATTAAAT
1 AATTTAATCAATTAGG-CCAATAACTTAATTAAAC
* * * *
8239035 AATTTAATTAATTAAGCCTAACAATTTAATTAAAC
1 AATTTAATCAATTAGGCC-AATAACTTAATTAAAC
* *
8239070 AATTTTAATCGATTAGGGCCAATGACTTAATTAAAC
1 AA-TTTAATCAATTA-GGCCAATAACTTAATTAAAC
* *
8239106 AATTTAATTAATTTGG-C-ATAACTTAATTAAAC
1 AATTTAATCAATTAGGCCAATAACTTAATTAAAC
8239138 AATTTTAATCAA
1 AA-TTTAATCAA
8239150 GTGCTTGAGA
Statistics
Matches: 95, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
32 16 0.17
33 9 0.09
34 4 0.04
35 38 0.40
36 25 0.26
37 3 0.03
ACGTcount: A:0.45, C:0.12, G:0.07, T:0.37
Consensus pattern (34 bp):
AATTTAATCAATTAGGCCAATAACTTAATTAAAC
Found at i:8239077 original size:71 final size:68
Alignment explanation
Indices: 8239002--8239149 Score: 206
Period size: 71 Copynumber: 2.1 Consensus size: 68
8238992 AATTGTTTAA
* *
8239002 TTTAATCAATTAGGCCCAATAACTTAATTAAATAATTTAATTAATTAAGCCTAACAATTTAATTA
1 TTTAATCAATTAGGCCCAATAACTTAATTAAACAATTTAATTAATTAAGCATAAC---TTAATTA
8239067 AACAAT
63 AACAAT
* * * **
8239073 TTTAATCGATTAGGGCCAATGACTTAATTAAACAATTTAATTAATTTGGCATAACTTAATTAAAC
1 TTTAATCAATTAGGCCCAATAACTTAATTAAACAATTTAATTAATTAAGCATAACTTAATTAAAC
8239138 AAT
66 AAT
8239141 TTTAATCAA
1 TTTAATCAA
8239150 GTGCTTGAGA
Statistics
Matches: 69, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
68 21 0.30
71 48 0.70
ACGTcount: A:0.44, C:0.12, G:0.07, T:0.37
Consensus pattern (68 bp):
TTTAATCAATTAGGCCCAATAACTTAATTAAACAATTTAATTAATTAAGCATAACTTAATTAAAC
AAT
Found at i:8249119 original size:2 final size:2
Alignment explanation
Indices: 8249112--8249154 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
8249102 NNNNNNNNNN
8249112 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8249154 T
1 T
8249155 GGTTTGAATT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8250551 original size:78 final size:78
Alignment explanation
Indices: 8250417--8250579 Score: 211
Period size: 78 Copynumber: 2.1 Consensus size: 78
8250407 TCGTGACAAT
* *
8250417 GGTATAATGATGTCAATATATAAATACAATCATGGTCCATGTGATAGGTGGACATGTGACATTCC
1 GGTATAATGATCTCAATATATAAATACAATCAAGGTCCATGTGATAGGTGGACATGTGACATTCC
* *
8250482 TATTTTACATTAA
66 TATTATACATGAA
* * * ***
8250495 GGTATAATGATACT-AATATGTAAATACCATCAAGGTCCATGTGATAGGTGGGCATGTGGTGTTC
1 GGTATAATGAT-CTCAATATATAAATACAATCAAGGTCCATGTGATAGGTGGACATGTGACATTC
*
8250559 TTATTATACATGAA
65 CTATTATACATGAA
8250573 GGTATAA
1 GGTATAA
8250580 CGACGTGATA
Statistics
Matches: 73, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
78 72 0.99
79 1 0.01
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.34
Consensus pattern (78 bp):
GGTATAATGATCTCAATATATAAATACAATCAAGGTCCATGTGATAGGTGGACATGTGACATTCC
TATTATACATGAA
Found at i:8251998 original size:6 final size:6
Alignment explanation
Indices: 8251987--8252012 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
8251977 AGTTTATTAG
8251987 TTTTAA TTTTAA TTTTAA TTTTAA TT
1 TTTTAA TTTTAA TTTTAA TTTTAA TT
8252013 GTTTGGATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (6 bp):
TTTTAA
Found at i:8254700 original size:13 final size:13
Alignment explanation
Indices: 8254682--8254706 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8254672 ATTTTCAAAA
8254682 ATTTTATAAAATT
1 ATTTTATAAAATT
8254695 ATTTTATAAAAT
1 ATTTTATAAAAT
8254707 CCCATTTTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATTTTATAAAATT
Found at i:8255908 original size:28 final size:29
Alignment explanation
Indices: 8255860--8255923 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 29
8255850 GTAAATTTTT
** *
8255860 AAAAATTACACTTTTACCCCCGTAAAGTG
1 AAAAATTACACTTTTACCCCCAAAAACTG
**
8255889 AAAAATTACA-TTTTTGCCCCAAAAACTG
1 AAAAATTACACTTTTACCCCCAAAAACTG
8255917 AAAAATT
1 AAAAATT
8255924 GCCCATAGAC
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 20 0.67
29 10 0.33
ACGTcount: A:0.44, C:0.20, G:0.08, T:0.28
Consensus pattern (29 bp):
AAAAATTACACTTTTACCCCCAAAAACTG
Found at i:8259474 original size:13 final size:13
Alignment explanation
Indices: 8259456--8259480 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8259446 ATTTTCAAAA
8259456 ATTTTATAAAATT
1 ATTTTATAAAATT
8259469 ATTTTATAAAAT
1 ATTTTATAAAAT
8259481 CCCATTTTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATTTTATAAAATT
Found at i:8261743 original size:22 final size:24
Alignment explanation
Indices: 8261702--8261746 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 24
8261692 TTGCATAATT
*
8261702 AAAATTAAATCCAGATGATGCAAG
1 AAAATTAAATACAGATGATGCAAG
8261726 AAAA-TAAATACAG-TGATGCAA
1 AAAATTAAATACAGATGATGCAA
8261747 TTGGTAAACT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 8 0.40
23 8 0.40
24 4 0.20
ACGTcount: A:0.53, C:0.11, G:0.16, T:0.20
Consensus pattern (24 bp):
AAAATTAAATACAGATGATGCAAG
Found at i:8262735 original size:17 final size:17
Alignment explanation
Indices: 8262702--8262735 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8262692 TTATACTTGT
*
8262702 TAATATTTTAATCATAA
1 TAATATTTAAATCATAA
*
8262719 TAATATTTAAATTATAA
1 TAATATTTAAATCATAA
8262736 ATAAAATATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (17 bp):
TAATATTTAAATCATAA
Found at i:8262748 original size:43 final size:43
Alignment explanation
Indices: 8262701--8263365 Score: 164
Period size: 43 Copynumber: 15.2 Consensus size: 43
8262691 ATTATACTTG
8262701 TTAATATTTTAATCATAATAATATTTAAATTATAAATAAAATA
1 TTAATATTTTAATCATAATAATATTTAAATTATAAATAAAATA
* * * * *
8262744 TTAATATTTTAA-AATATTCATGA-TTAAATTATAAGTCAAATA
1 TTAATATTTTAATCATAATAAT-ATTTAAATTATAAATAAAATA
* ** * * * *
8262786 TTTATGCATAAATGATCAATTAGTAATATTTTAAATTA-ATTATAAATTA
1 TTAAT--AT-TTTAATC-A-TAATAATA-TTTAAATTATA-AATAAAATA
* * * * *
8262835 TTAATATTTGAA-AATAA-AATA---AAAATA-AAATTTTAAGTA
1 TTAATATTTTAATCATAATAATATTTAAATTATAAA--TAAAATA
* *
8262874 -T-ATATTATAA--A-AATAATATTTAAATTTAAAAATTAATTAAATTA
1 TTAATATTTTAATCATAATAATATTTAAA-TTATAAA-T-A--AAA-TA
*
8262918 TTAATATTTTAATCATAATAACATTTAAATTATAAATAAAATA
1 TTAATATTTTAATCATAATAATATTTAAATTATAAATAAAATA
* * ** *
8262961 TTAATATACCAATT-ATCAATTATTAATATTTTAAATTA-ATTGTAAATTA
1 TTAATAT----TTTAATC-A-TAATAATA-TTTAAATTATA-AATAAAATA
* ** * * * * *
8263010 TTAATATTTATAA-AATAA-AATAAAATACATTTTCATTATATATA
1 TTAATATTT-TAATCATAATAAT-ATTTAAATTATAAATA-AAATA
*** ** * *
8263054 TT-ATAAAATAAT-ATTTTAA-ATTTAAA-AATTAATTAAAATA
1 TTAATATTTTAATCATAATAATATTTAAATTA-TAAATAAAATA
* *
8263094 TTAATATTTTAATCATAATAACATTTAAATTATAAATAAAATC
1 TTAATATTTTAATCATAATAATATTTAAATTATAAATAAAATA
* * * *
8263137 TTAATATTTAAATTATCATTTATTAATATTTTAAATTGAT-TATAAATTA
1 TTAATATTT---TAATCA--TAATAATA-TTTAAATT-ATAAATAAAATA
** * * * * *
8263186 TTAATATTTTTAAAAATAATAAAAATAAAATT-TAAATTATATA
1 TTAATA-TTTTAATCATAATAATATTTAAATTATAAATAAAATA
* * * ** * * *
8263229 TTAGAAAATATAAT-ATTTTAA-ATGTAAA-AATTAATTAAAATTA
1 TTA-ATATTTTAATCATAATAATATTTAAATTA-TAAATAAAA-TA
*
8263272 TTAATATTTTAATCATAATAA-ATTTAAGTTATAAATAAAATA
1 TTAATATTTTAATCATAATAATATTTAAATTATAAATAAAATA
** * * *
8263314 TTAATATTTTAAAAATATTGATGA-TTAAATTGTAAATAAAATA
1 TTAATATTTTAATCATAATAAT-ATTTAAATTATAAATAAAATA
8263357 TTAATATTT
1 TTAATATTT
8263366 AAATGATCAA
Statistics
Matches: 440, Mismatches: 118, Indels: 128
0.64 0.17 0.19
Matches are distributed among these distances:
35 2 0.00
36 5 0.01
37 8 0.02
38 7 0.02
39 8 0.02
40 10 0.02
41 23 0.05
42 79 0.18
43 127 0.29
44 27 0.06
45 11 0.03
46 19 0.04
47 12 0.03
48 26 0.06
49 71 0.16
50 5 0.01
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.44
Consensus pattern (43 bp):
TTAATATTTTAATCATAATAATATTTAAATTATAAATAAAATA
Found at i:8262990 original size:175 final size:175
Alignment explanation
Indices: 8262767--8263320 Score: 778
Period size: 176 Copynumber: 3.1 Consensus size: 175
8262757 ATATTCATGA
* * * ** * * *
8262767 TTAAATTATAAGTCAAATATTTATGCATAAATGATCAATTAGTAATATTTTAAATTAATTATAAA
1 TTAAATTATAAATAAAATATTAATATACAAATTATCAATTATTAATATTTTAAATTAATTATAAA
*
8262832 TTATTAATATTTGAAAATAAAATAAAAATAAAATTTTAAGTATATATTATAAAAATAATA-TTTA
66 TTATTAATATTTTAAAATAAAATAAAAATAAAATTTTAA-TATATATTATAAAAATAATATTTTA
8262896 AATTTAAAAATTAATTAAATTATTAATATTTTAATCATAATAACAT
130 AATTTAAAAATTAATTAAATTATTAATATTTTAATCATAATAACAT
* *
8262942 TTAAATTATAAATAAAATATTAATATACCAATTATCAATTATTAATATTTTAAATTAATTGTAAA
1 TTAAATTATAAATAAAATATTAATATACAAATTATCAATTATTAATATTTTAAATTAATTATAAA
*
8263007 TTATTAATATTTATAAAATAAAAT-AAAAT-ACATTTTCATTATATATATTAT-AAAATAATATT
66 TTATTAATATTT-TAAAATAAAATAAAAATAAAATTTT-A--ATATATATTATAAAAATAATATT
*
8263069 TTAAATTTAAAAATTAATTAAAATATTAATATTTTAATCATAATAACAT
127 TTAAATTTAAAAATTAATTAAATTATTAATATTTTAATCATAATAACAT
* ** * *
8263118 TTAAATTATAAATAAAATCTTAATATTTAAATTATCATTTATTAATATTTTAAATTGATTATAAA
1 TTAAATTATAAATAAAATATTAATATACAAATTATCAATTATTAATATTTTAAATTAATTATAAA
* * *
8263183 TTATTAATATTTTTAAAA-ATAATAAAAATAAAATTTAAATTATATATTAGAAAATATAATATTT
66 TTATTAATA-TTTTAAAATAAAATAAAAATAAAATTTTAA-TATATATTATAAAA-ATAATATTT
*
8263247 TAAATGTAAAAATTAATTAAAATTATTAATATTTTAATCATAATAA-AT
128 TAAATTTAAAAATTAATT-AAATTATTAATATTTTAATCATAATAACAT
*
8263295 TTAAGTTATAAATAAAATATTAATAT
1 TTAAATTATAAATAAAATATTAATAT
8263321 TTTAAAAATA
Statistics
Matches: 339, Mismatches: 28, Indels: 22
0.87 0.07 0.06
Matches are distributed among these distances:
174 7 0.02
175 95 0.28
176 150 0.44
177 61 0.18
178 26 0.08
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.43
Consensus pattern (175 bp):
TTAAATTATAAATAAAATATTAATATACAAATTATCAATTATTAATATTTTAAATTAATTATAAA
TTATTAATATTTTAAAATAAAATAAAAATAAAATTTTAATATATATTATAAAAATAATATTTTAA
ATTTAAAAATTAATTAAATTATTAATATTTTAATCATAATAACAT
Found at i:8263033 original size:27 final size:27
Alignment explanation
Indices: 8262978--8263033 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
8262968 ACCAATTATC
* **
8262978 AATTATTAATATTTTAAATTAATTGTA
1 AATTATTAATATTTTAAAATAATAATA
8263005 AATTATTAATATTTATAAAATAA-AATA
1 AATTATTAATATTT-TAAAATAATAATA
8263032 AA
1 AA
8263034 ATACATTTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 18 0.72
28 7 0.28
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.45
Consensus pattern (27 bp):
AATTATTAATATTTTAAAATAATAATA
Found at i:8269897 original size:19 final size:19
Alignment explanation
Indices: 8269873--8269910 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
8269863 TGAGTAAGCA
*
8269873 TGCCTTTCTTTTCCTTTCT
1 TGCCTTTCTTCTCCTTTCT
*
8269892 TGCCTTTGTTCTCCTTTCT
1 TGCCTTTCTTCTCCTTTCT
8269911 AAAACCTCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.00, C:0.32, G:0.08, T:0.61
Consensus pattern (19 bp):
TGCCTTTCTTCTCCTTTCT
Found at i:8274053 original size:16 final size:16
Alignment explanation
Indices: 8274032--8274067 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
8274022 TTTACGTATG
*
8274032 TATATATATATATACA
1 TATATATATAGATACA
8274048 TATATATATAGATACA
1 TATATATATAGATACA
8274064 TATA
1 TATA
8274068 CCCATCATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.42
Consensus pattern (16 bp):
TATATATATAGATACA
Found at i:8274183 original size:43 final size:43
Alignment explanation
Indices: 8274136--8274217 Score: 110
Period size: 43 Copynumber: 1.9 Consensus size: 43
8274126 CACATGGCTG
* * *
8274136 GGTCATCACCGGTTTATGCGCACTCCCTACTCGCTCATAACCA
1 GGTCATCACCGGCTTATGAGCACTCCCTACTCGCACATAACCA
* **
8274179 GGTCATCATCGGCTTATGAGCACTCTTTACTCGCACATA
1 GGTCATCACCGGCTTATGAGCACTCCCTACTCGCACATA
8274218 GCCGAGTCCA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.22, C:0.33, G:0.17, T:0.28
Consensus pattern (43 bp):
GGTCATCACCGGCTTATGAGCACTCCCTACTCGCACATAACCA
Found at i:8281866 original size:4 final size:4
Alignment explanation
Indices: 8281857--8281901 Score: 65
Period size: 4 Copynumber: 11.2 Consensus size: 4
8281847 TAAAGTAAAG
*
8281857 AACT AACT AACT AACT AACT AA-T GACT AAACT AACT AACT AACT A
1 AACT AACT AACT AACT AACT AACT AACT -AACT AACT AACT AACT A
8281902 CCATAATAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
3 2 0.05
4 32 0.86
5 3 0.08
ACGTcount: A:0.51, C:0.22, G:0.02, T:0.24
Consensus pattern (4 bp):
AACT
Found at i:8285436 original size:14 final size:14
Alignment explanation
Indices: 8285414--8285444 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
8285404 TAACCACCCT
*
8285414 TGAATTTGAAAACG
1 TGAAGTTGAAAACG
8285428 TGAAGTTGAAAACG
1 TGAAGTTGAAAACG
8285442 TGA
1 TGA
8285445 GTATAAACTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.42, C:0.06, G:0.26, T:0.26
Consensus pattern (14 bp):
TGAAGTTGAAAACG
Found at i:8286166 original size:2 final size:2
Alignment explanation
Indices: 8286159--8286200 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
8286149 TTTCTATAAC
*
8286159 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8286201 GCATCATCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8286336 original size:43 final size:43
Alignment explanation
Indices: 8286278--8286361 Score: 150
Period size: 43 Copynumber: 2.0 Consensus size: 43
8286268 CATCATCATT
*
8286278 AGCTCATGTGCACTCCCACACCGCACATAGCTGGGTCATCACC
1 AGCTCATGTGAACTCCCACACCGCACATAGCTGGGTCATCACC
*
8286321 AGCTCATGTGAACTCCCACACCGCACATAGTTGGGTCATCA
1 AGCTCATGTGAACTCCCACACCGCACATAGCTGGGTCATCA
8286362 TTACCACACA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.25, C:0.36, G:0.19, T:0.20
Consensus pattern (43 bp):
AGCTCATGTGAACTCCCACACCGCACATAGCTGGGTCATCACC
Found at i:8287802 original size:13 final size:13
Alignment explanation
Indices: 8287784--8287877 Score: 50
Period size: 13 Copynumber: 7.1 Consensus size: 13
8287774 TTAATGTCAT
8287784 ATATTTTATTTTA
1 ATATTTTATTTTA
*
8287797 ATATTTTATTATA
1 ATATTTTATTTTA
* *
8287810 ATTATATATAGTTTTC
1 A-TAT-TTTA-TTTTA
* *
8287826 AT-TTCTTAATATA
1 ATATT-TTATTTTA
* **
8287839 ATTTTTTACATTA
1 ATATTTTATTTTA
8287852 TATATTTTATTTTA
1 -ATATTTTATTTTA
8287866 AT-TTTT-TTTTA
1 ATATTTTATTTTA
8287877 A
1 A
8287878 AAAAATAATA
Statistics
Matches: 61, Mismatches: 14, Indels: 14
0.69 0.16 0.16
Matches are distributed among these distances:
11 6 0.10
12 4 0.07
13 25 0.41
14 18 0.30
15 4 0.07
16 4 0.07
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (13 bp):
ATATTTTATTTTA
Found at i:8288256 original size:12 final size:12
Alignment explanation
Indices: 8288239--8288264 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8288229 AGATAGCTTC
8288239 TATCTTATAAGA
1 TATCTTATAAGA
8288251 TATCTTATAAGA
1 TATCTTATAAGA
8288263 TA
1 TA
8288265 GGTTAGAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (12 bp):
TATCTTATAAGA
Found at i:8290696 original size:27 final size:27
Alignment explanation
Indices: 8290658--8290711 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
8290648 TTGTGTTGAC
*
8290658 TGCCAACATGCAGTTACGATGCTCAAA
1 TGCCAACATGCAGTTACAATGCTCAAA
8290685 TGCCAACATGCAGTTACAATGCTCAAA
1 TGCCAACATGCAGTTACAATGCTCAAA
8290712 CATTTGCATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.35, C:0.26, G:0.17, T:0.22
Consensus pattern (27 bp):
TGCCAACATGCAGTTACAATGCTCAAA
Found at i:8300754 original size:12 final size:12
Alignment explanation
Indices: 8300737--8300766 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
8300727 AAGTGCCAAA
8300737 AATAAATTAATG
1 AATAAATTAATG
*
8300749 AATAAATTAGTG
1 AATAAATTAATG
8300761 AATAAA
1 AATAAA
8300767 CAATGTGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.10, T:0.30
Consensus pattern (12 bp):
AATAAATTAATG
Found at i:8301886 original size:21 final size:21
Alignment explanation
Indices: 8301862--8301911 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
8301852 TGCAAGGGAT
8301862 GTTTAAAA-CTTATTTAAACAA
1 GTTTAAAAGC-TATTTAAACAA
*
8301883 GTTTAAAAGCTATTTAAACAT
1 GTTTAAAAGCTATTTAAACAA
*
8301904 GTTCAAAA
1 GTTTAAAA
8301912 ATCATTCAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 25 0.96
22 1 0.04
ACGTcount: A:0.46, C:0.10, G:0.08, T:0.36
Consensus pattern (21 bp):
GTTTAAAAGCTATTTAAACAA
Found at i:8301929 original size:21 final size:21
Alignment explanation
Indices: 8301905--8301948 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
8301895 TTTAAACATG
8301905 TTCAAAAATCATTCAAGTAAT
1 TTCAAAAATCATTCAAGTAAT
*
8301926 TTCAAAACTCATTCAAGTAAT
1 TTCAAAAATCATTCAAGTAAT
8301947 TT
1 TT
8301949 TGAAAATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.43, C:0.16, G:0.05, T:0.36
Consensus pattern (21 bp):
TTCAAAAATCATTCAAGTAAT
Found at i:8302164 original size:21 final size:21
Alignment explanation
Indices: 8302121--8302176 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
8302111 TTTAAAACCA
*
8302121 CATTCAAACAACTTCAAAAAT
1 CATTCAAACAAGTTCAAAAAT
**
8302142 CATTCAAACAAGTTCAACGAT
1 CATTCAAACAAGTTCAAAAAT
* *
8302163 CACTCAAATAAGTT
1 CATTCAAACAAGTT
8302177 TATAGAATTG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.46, C:0.23, G:0.05, T:0.25
Consensus pattern (21 bp):
CATTCAAACAAGTTCAAAAAT
Found at i:8302503 original size:21 final size:21
Alignment explanation
Indices: 8302477--8302516 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
8302467 GTTTTGGAAC
8302477 AAAGTATCAATACTTTCAATA
1 AAAGTATCAATACTTTCAATA
**
8302498 AAAGTATTGATACTTTCAA
1 AAAGTATCAATACTTTCAA
8302517 CATAGAATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.45, C:0.12, G:0.07, T:0.35
Consensus pattern (21 bp):
AAAGTATCAATACTTTCAATA
Found at i:8305209 original size:2 final size:2
Alignment explanation
Indices: 8305202--8305240 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
8305192 AAAGTAAGAT
8305202 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
8305241 TATATATATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:8305259 original size:2 final size:2
Alignment explanation
Indices: 8305254--8305286 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
8305244 ATATATATAT
8305254 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
8305287 NATCATGGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:8305393 original size:2 final size:2
Alignment explanation
Indices: 8305386--8305422 Score: 53
Period size: 2 Copynumber: 20.0 Consensus size: 2
8305376 AATTATTAAT
8305386 TA TA TA TA TA T- TA TA TA TA -A TA T- TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8305423 CACACACATA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
1 3 0.09
2 29 0.91
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8305532 original size:28 final size:28
Alignment explanation
Indices: 8305501--8305555 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
8305491 TGTATATAGG
* * *
8305501 TATATATGTATATCTGTGTGTGTGTGTA
1 TATACATGTATATATATGTGTGTGTGTA
8305529 TATACATGTATATATATGTGTGTGTGT
1 TATACATGTATATATATGTGTGTGTGT
8305556 TTGTGCTTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.24, C:0.04, G:0.24, T:0.49
Consensus pattern (28 bp):
TATACATGTATATATATGTGTGTGTGTA
Found at i:8312366 original size:2 final size:2
Alignment explanation
Indices: 8312359--8312391 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
8312349 AAACAAAACA
*
8312359 AC AC AC AC AC AC AC AC AC AT AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
8312392 TATAAGCACA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.45, G:0.00, T:0.03
Consensus pattern (2 bp):
AC
Found at i:8325112 original size:43 final size:42
Alignment explanation
Indices: 8324964--8325104 Score: 212
Period size: 42 Copynumber: 3.3 Consensus size: 42
8324954 GTGCGTGTGG
* * *
8324964 GAGTGCACATGAGCTGATGATGACCCAGCTATGTG-CGTGTGG
1 GAGTGCACATGAGCTAATGATGACCCAACTATGTGTGGTG-GG
* *
8325006 GAATGCACATGAGCTAATGATGACCCAACTATGTGTGGTGTG
1 GAGTGCACATGAGCTAATGATGACCCAACTATGTGTGGTGGG
8325048 GAGTGCACATGAGCTAATGATGACCCAACTATGTGTGAGTGGG
1 GAGTGCACATGAGCTAATGATGACCCAACTATGTGTG-GTGGG
8325091 GAGTGCACATGAGC
1 GAGTGCACATGAGC
8325105 CGATGATGGT
Statistics
Matches: 90, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
42 69 0.77
43 21 0.23
ACGTcount: A:0.26, C:0.18, G:0.33, T:0.23
Consensus pattern (42 bp):
GAGTGCACATGAGCTAATGATGACCCAACTATGTGTGGTGGG
Found at i:8325145 original size:2 final size:2
Alignment explanation
Indices: 8325138--8325171 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
8325128 TGATGATGTG
8325138 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8325172 NNNNNNNNNN
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8328674 original size:47 final size:45
Alignment explanation
Indices: 8328595--8328720 Score: 155
Period size: 47 Copynumber: 2.8 Consensus size: 45
8328585 GTTGTGATTG
* * *
8328595 TGAAGATTGGTTCAACTGCTTATTCTTGGTTGATTGTAATGACTA
1 TGAAGATTGATTCAACTGCTTATCCTTGGTTGATTGTAATAACTA
* * * *
8328640 TGAAGATTGTTTCAGTTACT-CTTTTCCTTGGTTGATTGTGATAACTG
1 TGAAGATTGATTCA---ACTGCTTATCCTTGGTTGATTGTAATAACTA
8328687 TGAAGATTGATTCAACTGCTTATCCTTGGTTGAT
1 TGAAGATTGATTCAACTGCTTATCCTTGGTTGAT
8328721 AATGATGACT
Statistics
Matches: 69, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
44 3 0.04
45 28 0.41
47 35 0.51
48 3 0.04
ACGTcount: A:0.22, C:0.13, G:0.21, T:0.44
Consensus pattern (45 bp):
TGAAGATTGATTCAACTGCTTATCCTTGGTTGATTGTAATAACTA
Found at i:8329751 original size:20 final size:20
Alignment explanation
Indices: 8329726--8329765 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
8329716 CTATAAATAT
8329726 CTCATTTCTCCAGCAACTTC
1 CTCATTTCTCCAGCAACTTC
* *
8329746 CTCATTTTTCCAGCAGCTTC
1 CTCATTTCTCCAGCAACTTC
8329766 TTGTTCTTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.17, C:0.38, G:0.07, T:0.38
Consensus pattern (20 bp):
CTCATTTCTCCAGCAACTTC
Found at i:8330682 original size:52 final size:52
Alignment explanation
Indices: 8330620--8330721 Score: 195
Period size: 52 Copynumber: 2.0 Consensus size: 52
8330610 TGAAGTGTAC
*
8330620 GAGTAGGGAGTGCACACATGATGATGTTGAAGTGTGCGAGTAGGGAGTGCTT
1 GAGTAAGGAGTGCACACATGATGATGTTGAAGTGTGCGAGTAGGGAGTGCTT
8330672 GAGTAAGGAGTGCACACATGATGATGTTGAAGTGTGCGAGTAGGGAGTGC
1 GAGTAAGGAGTGCACACATGATGATGTTGAAGTGTGCGAGTAGGGAGTGC
8330722 ACACATGATA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.26, C:0.10, G:0.40, T:0.24
Consensus pattern (52 bp):
GAGTAAGGAGTGCACACATGATGATGTTGAAGTGTGCGAGTAGGGAGTGCTT
Found at i:8336478 original size:40 final size:37
Alignment explanation
Indices: 8336395--8336476 Score: 155
Period size: 37 Copynumber: 2.2 Consensus size: 37
8336385 TAATGTTATG
8336395 TGATGATGTTGAAGTGTGTGAGTAGGGAGTGCACACA
1 TGATGATGTTGAAGTGTGTGAGTAGGGAGTGCACACA
*
8336432 TGATGATGTTGGAGTGTGTGAGTAGGGAGTGCACACA
1 TGATGATGTTGAAGTGTGTGAGTAGGGAGTGCACACA
8336469 TGATGATG
1 TGATGATG
8336477 ATATTGCATT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 44 1.00
ACGTcount: A:0.26, C:0.07, G:0.39, T:0.28
Consensus pattern (37 bp):
TGATGATGTTGAAGTGTGTGAGTAGGGAGTGCACACA
Found at i:8336533 original size:2 final size:2
Alignment explanation
Indices: 8336526--8336550 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8336516 ATGATGTATG
8336526 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
8336551 GTGTGTGTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8336555 original size:2 final size:2
Alignment explanation
Indices: 8336550--8336580 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
8336540 TATATATATA
8336550 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
8336581 TATAAGTAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:8336610 original size:157 final size:153
Alignment explanation
Indices: 8336449--8336755 Score: 578
Period size: 157 Copynumber: 2.0 Consensus size: 153
8336439 GTTGGAGTGT
8336449 GTGAGTAGGGAGTGCACACATGATGATGATATTGCATTGAGTTGAGTGTTGCAGGATGGTATGCA
1 GTGAGTAGGGAGTGCACACATGATGATGATATTGCATTGAGTTGAGTGTTGCAGGATGGTATGCA
8336514 TGATGATGTATGTATATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGT
66 TGATGATGTATGTATATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGT
8336579 GTTATAAGTAAAGTTTAATAAAATTA
131 GTTAT-AG-AAAGTTT-ATAAAATTA
8336605 NGTGAGTAGGGAGTGCACACATGATGATGATATTGCATTGAGTTGAGTGTTGCAGGATGGTATGC
1 -GTGAGTAGGGAGTGCACACATGATGATGATATTGCATTGAGTTGAGTGTTGCAGGATGGTATGC
8336670 ATGATGATGTATGTATATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTG
65 ATGATGATGTATGTATATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTG
8336735 TGTTATAGAAAGTTTATAAAA
130 TGTTATAGAAAGTTTATAAAA
8336756 ATATTTGTGA
Statistics
Matches: 150, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
154 6 0.04
155 7 0.05
156 2 0.01
157 135 0.90
ACGTcount: A:0.28, C:0.04, G:0.29, T:0.39
Consensus pattern (153 bp):
GTGAGTAGGGAGTGCACACATGATGATGATATTGCATTGAGTTGAGTGTTGCAGGATGGTATGCA
TGATGATGTATGTATATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTTATAGAAAGTTTATAAAATTA
Found at i:8336690 original size:2 final size:2
Alignment explanation
Indices: 8336683--8336707 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8336673 ATGATGTATG
8336683 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
8336708 GTGTGTGTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8336712 original size:2 final size:2
Alignment explanation
Indices: 8336707--8336737 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
8336697 TATATATATA
8336707 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
8336738 TATAGAAAGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:8339441 original size:30 final size:30
Alignment explanation
Indices: 8339401--8339463 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
8339391 ATGTGAATTT
*
8339401 TAACCATAGAGTAATAAGAAAAATATAACC
1 TAACCATAGAGTAACAAGAAAAATATAACC
* *
8339431 TAACCGTAGAGTAACAAGAAAAATATAAGC
1 TAACCATAGAGTAACAAGAAAAATATAACC
8339461 TAA
1 TAA
8339464 GGAAGAAGAC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.56, C:0.13, G:0.13, T:0.19
Consensus pattern (30 bp):
TAACCATAGAGTAACAAGAAAAATATAACC
Found at i:8339961 original size:21 final size:20
Alignment explanation
Indices: 8339932--8339971 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
8339922 TTAAAACTAA
8339932 TAAAAAATAGAGAAATTAAAG
1 TAAAAAATAGA-AAATTAAAG
* *
8339953 TAAATAATATAAAATTAAA
1 TAAAAAATAGAAAATTAAA
8339972 ATAACTCAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.68, C:0.00, G:0.07, T:0.25
Consensus pattern (20 bp):
TAAAAAATAGAAAATTAAAG
Found at i:8352249 original size:42 final size:42
Alignment explanation
Indices: 8352141--8352264 Score: 126
Period size: 42 Copynumber: 2.9 Consensus size: 42
8352131 TGTGATTATA
* * * * *
8352141 AAGATTGGTTTTGCTAATTATTCTTGGTCGATTATGATAACTATG
1 AAGATTGATTTAGCTACTTATCCTTGGTTGATTATG---ACTATG
* *
8352186 AAGATT-ATTTCA-ATTCTTTATCCTTGGTTGATTATGACTATG
1 AAGATTGATTT-AGCTAC-TTATCCTTGGTTGATTATGACTATG
8352228 AAGATTGATTTAGCTACTTATCCTTGGTTGATTATGA
1 AAGATTGATTTAGCTACTTATCCTTGGTTGATTATGA
8352265 TGACTTCAAG
Statistics
Matches: 66, Mismatches: 9, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
42 33 0.50
43 6 0.09
44 4 0.06
45 23 0.35
ACGTcount: A:0.27, C:0.10, G:0.18, T:0.45
Consensus pattern (42 bp):
AAGATTGATTTAGCTACTTATCCTTGGTTGATTATGACTATG
Found at i:8362948 original size:17 final size:17
Alignment explanation
Indices: 8362926--8362958 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8362916 AAATATGCAC
*
8362926 ATACTTAGGGGGAGCAT
1 ATACTTAAGGGGAGCAT
8362943 ATACTTAAGGGGAGCA
1 ATACTTAAGGGGAGCA
8362959 ATCCTTATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.12, G:0.33, T:0.21
Consensus pattern (17 bp):
ATACTTAAGGGGAGCAT
Found at i:8369817 original size:35 final size:35
Alignment explanation
Indices: 8369744--8369819 Score: 93
Period size: 35 Copynumber: 2.2 Consensus size: 35
8369734 AAGGTCAGAA
* *
8369744 TAACCTTTACAACATGCTTTTCGTAAGATTAGGAG
1 TAACCTCTACAACATGCTTTTCGTAAGATCAGGAG
*
8369779 TAACCTCTACAACATGCCTTTT-GCT-AGATCAGGTG
1 TAACCTCTACAACATG-CTTTTCG-TAAGATCAGGAG
8369814 TAACCT
1 TAACCT
8369820 TTATCAAGAC
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
35 30 0.83
36 6 0.17
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (35 bp):
TAACCTCTACAACATGCTTTTCGTAAGATCAGGAG
Found at i:8370760 original size:21 final size:21
Alignment explanation
Indices: 8370734--8370775 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
8370724 GGACAGAAAG
*
8370734 TTTCTCACTGCAGCGAGATTC
1 TTTCTCACTACAGCGAGATTC
* *
8370755 TTTCTCTCTACAGTGAGATTC
1 TTTCTCACTACAGCGAGATTC
8370776 AGTTGGCCAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.19, C:0.26, G:0.17, T:0.38
Consensus pattern (21 bp):
TTTCTCACTACAGCGAGATTC
Found at i:8375579 original size:19 final size:19
Alignment explanation
Indices: 8375555--8375592 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
8375545 CTGCCAAACC
*
8375555 CTCAAATTATACTCCAATA
1 CTCAAATCATACTCCAATA
8375574 CTCAAATCATACTCCAATA
1 CTCAAATCATACTCCAATA
8375593 AGTTAAATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.29, G:0.00, T:0.29
Consensus pattern (19 bp):
CTCAAATCATACTCCAATA
Found at i:8376301 original size:20 final size:20
Alignment explanation
Indices: 8376271--8376308 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
8376261 TTTGAATTTT
8376271 GAAAATAAGAGAT-TTTTGA
1 GAAAATAAGAGATATTTTGA
8376290 GAAAATTAAGAGATATTTT
1 GAAAA-TAAGAGATATTTT
8376309 TTTAAGTTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 5 0.29
20 8 0.47
21 4 0.24
ACGTcount: A:0.47, C:0.00, G:0.18, T:0.34
Consensus pattern (20 bp):
GAAAATAAGAGATATTTTGA
Found at i:8377695 original size:15 final size:15
Alignment explanation
Indices: 8377660--8377702 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
8377650 AAATAGTAAA
*
8377660 TAAAATATTAATATTTT
1 TAAAATATT-A-ATGTT
8377677 TAAAATATTAATGTT
1 TAAAATATTAATGTT
*
8377692 TAAATTATTAA
1 TAAAATATTAA
8377703 GTGAAAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 14 0.58
16 1 0.04
17 9 0.38
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (15 bp):
TAAAATATTAATGTT
Found at i:8378129 original size:26 final size:26
Alignment explanation
Indices: 8378099--8378169 Score: 119
Period size: 26 Copynumber: 2.8 Consensus size: 26
8378089 TACTATTTAG
8378099 ATTA-TAATTATTTTAAAAATTTATAA
1 ATTATTAA-TATTTTAAAAATTTATAA
8378125 ATTATTAATATTTTAAAAATTTATAA
1 ATTATTAATATTTTAAAAATTTATAA
8378151 ATTATTAATA-TTTAAAAAT
1 ATTATTAATATTTTAAAAAT
8378170 AAAATAAATA
Statistics
Matches: 44, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
25 9 0.20
26 32 0.73
27 3 0.07
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (26 bp):
ATTATTAATATTTTAAAAATTTATAA
Found at i:8378186 original size:26 final size:26
Alignment explanation
Indices: 8378099--8378178 Score: 92
Period size: 26 Copynumber: 3.1 Consensus size: 26
8378089 TACTATTTAG
**
8378099 ATTA-TAATTATTTTAAAAATTTATAA
1 ATTATTAA-TATTTTAAAAATAAATAA
**
8378125 ATTATTAATATTTTAAAAATTTATAA
1 ATTATTAATATTTTAAAAATAAATAA
8378151 ATTATTAATA-TTTAAAAATAAAATAA
1 ATTATTAATATTTTAAAAAT-AAATAA
8378177 AT
1 AT
8378179 AATAAATAAT
Statistics
Matches: 50, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
25 9 0.18
26 38 0.76
27 3 0.06
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (26 bp):
ATTATTAATATTTTAAAAATAAATAA
Found at i:8388568 original size:20 final size:20
Alignment explanation
Indices: 8388543--8388594 Score: 97
Period size: 20 Copynumber: 2.6 Consensus size: 20
8388533 CGCCCTTAAG
8388543 ATGAATATTCATGGTGGAGC
1 ATGAATATTCATGGTGGAGC
8388563 ATGAATATTCATGGTGGAGC
1 ATGAATATTCATGGTGGAGC
8388583 ATGAATA-TCATG
1 ATGAATATTCATG
8388595 AATATTCATC
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
19 5 0.16
20 27 0.84
ACGTcount: A:0.33, C:0.10, G:0.27, T:0.31
Consensus pattern (20 bp):
ATGAATATTCATGGTGGAGC
Found at i:8391166 original size:54 final size:54
Alignment explanation
Indices: 8391103--8391208 Score: 203
Period size: 54 Copynumber: 2.0 Consensus size: 54
8391093 GGCAGTATGC
8391103 AAGATACATCTAATTTGTTTCTTAGCAAAAATATCCATGTAAAACGTGAACAAT
1 AAGATACATCTAATTTGTTTCTTAGCAAAAATATCCATGTAAAACGTGAACAAT
*
8391157 AAGATACATCTAATTTGTTTCTTAGCAAGAATATCCATGTAAAACGTGAACA
1 AAGATACATCTAATTTGTTTCTTAGCAAAAATATCCATGTAAAACGTGAACA
8391209 GTCATCTACC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.31
Consensus pattern (54 bp):
AAGATACATCTAATTTGTTTCTTAGCAAAAATATCCATGTAAAACGTGAACAAT
Found at i:8396326 original size:22 final size:22
Alignment explanation
Indices: 8396275--8396326 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
8396265 TTGTTTTTCT
*
8396275 AATT-AAATTATATATAATTTT
1 AATTAAAATTATATATAATTTG
*
8396296 AA-TATAATTCATATATAA-TTG
1 AATTAAAATT-ATATATAATTTG
8396317 AATTAAAATT
1 AATTAAAATT
8396327 TAACCTAATC
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
20 1 0.04
21 10 0.40
22 14 0.56
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (22 bp):
AATTAAAATTATATATAATTTG
Found at i:8398822 original size:34 final size:34
Alignment explanation
Indices: 8398784--8399002 Score: 174
Period size: 34 Copynumber: 6.8 Consensus size: 34
8398774 TTTGATGCTA
*
8398784 AAGCTTTGGCCTTGGCATGTAACATCCGGTGTTG
1 AAGCTTTGGCCTTGGCATGTAACATCTGGTGTTG
* ** * * *
8398818 AAGCTTTGGCTTTGGTGTGTAACATCTAGTGCTA
1 AAGCTTTGGCCTTGGCATGTAACATCTGGTGTTG
** *
8398852 AAGCTTTGATCTTGGCATGTAACATCTGGTATTG
1 AAGCTTTGGCCTTGGCATGTAACATCTGGTGTTG
* ** * *
8398886 AAGCTTTGACCTTGGTGTGTAACATCTGCTATTG
1 AAGCTTTGGCCTTGGCATGTAACATCTGGTGTTG
* *
8398920 AAGTTTTGG---T-G--TGTAACATCT--T-CT-
1 AAGCTTTGGCCTTGGCATGTAACATCTGGTGTTG
* *
8398944 --GCTTTGGCCTTGGCGTGTAACATCTGGTGCTG
1 AAGCTTTGGCCTTGGCATGTAACATCTGGTGTTG
*
8398976 AAGCTTTGACCTTGGCATGTAACATCT
1 AAGCTTTGGCCTTGGCATGTAACATCT
8399003 ACTCCTAAAG
Statistics
Matches: 147, Mismatches: 26, Indels: 24
0.75 0.13 0.12
Matches are distributed among these distances:
22 6 0.04
25 2 0.01
26 2 0.01
28 20 0.14
30 2 0.01
31 3 0.02
34 112 0.76
ACGTcount: A:0.20, C:0.18, G:0.26, T:0.37
Consensus pattern (34 bp):
AAGCTTTGGCCTTGGCATGTAACATCTGGTGTTG
Found at i:8398838 original size:68 final size:68
Alignment explanation
Indices: 8398779--8398912 Score: 214
Period size: 68 Copynumber: 2.0 Consensus size: 68
8398769 TAATATTTGA
* *
8398779 TGCTAAAGCTTTGGCCTTGGCATGTAACATCCGGTGTTGAAGCTTTGGCTTTGGTGTGTAACATC
1 TGCTAAAGCTTTGACCTTGGCATGTAACATCCGGTATTGAAGCTTTGGCTTTGGTGTGTAACATC
8398844 TAG
66 TAG
* * * *
8398847 TGCTAAAGCTTTGATCTTGGCATGTAACATCTGGTATTGAAGCTTTGACCTTGGTGTGTAACATC
1 TGCTAAAGCTTTGACCTTGGCATGTAACATCCGGTATTGAAGCTTTGGCTTTGGTGTGTAACATC
8398912 T
66 T
8398913 GCTATTGAAG
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
68 60 1.00
ACGTcount: A:0.21, C:0.17, G:0.25, T:0.37
Consensus pattern (68 bp):
TGCTAAAGCTTTGACCTTGGCATGTAACATCCGGTATTGAAGCTTTGGCTTTGGTGTGTAACATC
TAG
Found at i:8401055 original size:2 final size:2
Alignment explanation
Indices: 8401050--8401086 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
8401040 GAAGCCACCA
8401050 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8401087 GAGAGAGAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8409523 original size:13 final size:13
Alignment explanation
Indices: 8409505--8409529 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8409495 GGAAAATGGG
8409505 ATTTTATAAAATA
1 ATTTTATAAAATA
8409518 ATTTTATAAAAT
1 ATTTTATAAAAT
8409530 TTTTGAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
ATTTTATAAAATA
Found at i:8415225 original size:15 final size:16
Alignment explanation
Indices: 8415205--8415236 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
8415195 TGTTATTATG
8415205 ATTA-TTTATTTTTAA
1 ATTATTTTATTTTTAA
8415220 ATTATTTTATTTTTAA
1 ATTATTTTATTTTTAA
8415236 A
1 A
8415237 CATTAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (16 bp):
ATTATTTTATTTTTAA
Found at i:8415311 original size:118 final size:116
Alignment explanation
Indices: 8415166--8415531 Score: 348
Period size: 118 Copynumber: 3.0 Consensus size: 116
8415156 TAATATTAAA
* * * *
8415166 AAATACTAATATTTTGTTCATAATTTAAATGTTATTATGATTATTTATTTTTAAATTATTTTATT
1 AAATATTAATATTTTATTTATAATTTAAAT-TTATTATGATTATTTATTTTTAATTTATTTTATT
* * *
8415231 TTTAAACATTAAAAATGTATAATTTATTTAAAAATATTAAAAATTGAT-AGTTT
65 TTTAAAAATTAAAAATTTATAATTTATTT-AAAATATTAATAATTGATCA-TTT
8415284 AAATATTAATATTTTATTTATACTTTAATCATTAATATTAAATGTTATTATGATTATTTATTTTT
1 AAATATT-A-A---TATTT-TA--TT--T-A-TAAT-TTAAAT-TTATTATGATTATTTATTTTT
* * * * * *
8415349 -ATTTCAATTTATTTTTTAAATATTAATAATTTATATTTTATTTATAATATTAATAATTTATCAT
52 AATTT-ATTTTA-TTTTTAAAAATTAAAAATTTATAATTTATTTAAAATATTAATAATTGATCAT
8415413 TT
115 TT
8415415 AAATATTAATATTTTATTTATAATTTAAATTTTATTATGATTATTTATTTTT-ATTTAATTTTAT
1 AAATATTAATATTTTATTTATAATTTAAA-TTTATTATGATTATTTATTTTTAATTT-ATTTTAT
* * *
8415479 CTTTTAAATATTAATAATTTAT-ATTT-TTT-AAATATTAATAATTGATTATTT
64 -TTTTAAAAATTAAAAATTTATAATTTATTTAAAATATTAATAATTGATCATTT
8415530 AA
1 AA
8415532 GTNNNNNNNN
Statistics
Matches: 212, Mismatches: 18, Indels: 39
0.79 0.07 0.14
Matches are distributed among these distances:
115 21 0.10
116 3 0.01
117 4 0.02
118 62 0.29
119 6 0.03
120 2 0.01
121 1 0.00
123 7 0.03
124 1 0.00
125 2 0.01
126 7 0.03
129 2 0.01
130 8 0.04
131 58 0.27
132 28 0.13
ACGTcount: A:0.39, C:0.02, G:0.03, T:0.56
Consensus pattern (116 bp):
AAATATTAATATTTTATTTATAATTTAAATTTATTATGATTATTTATTTTTAATTTATTTTATTT
TTAAAAATTAAAAATTTATAATTTATTTAAAATATTAATAATTGATCATTT
Found at i:8415334 original size:131 final size:130
Alignment explanation
Indices: 8415186--8415442 Score: 367
Period size: 131 Copynumber: 2.0 Consensus size: 130
8415176 ATTTTGTTCA
*
8415186 TAATTTAAATGTTATTATGATTATTTATTTTTAAATT-ATTTTA-TTTTTAAACATTAAAAATGT
1 TAATTTAAATGTTATTATGATTATTTATTTTT-AATTCAATTTATTTTTTAAACATTAAAAATGT
*
8415249 ATAATTTATTTAAAAATATTAAAAATTGAT-AGTTTAAATATTAATATTTTATTTATACTTTAAT
65 ATAATTTATTT-AAAATATTAAAAATTGATCA-TTTAAATATTAATATTTTATTTATAATTTAAT
8415313 CAT
128 CAT
* * * *
8415316 TAATATTAAATGTTATTATGATTATTTATTTTTATTTCAATTTATTTTTTAAATATTAATAATTT
1 TAAT-TTAAATGTTATTATGATTATTTATTTTTAATTCAATTTATTTTTTAAACATTAAAAATGT
* * * *
8415381 ATATTTTATTTATAATATTAATAATTTATCATTTAAATATTAATATTTTATTTATAATTTAA
65 ATAATTTATTTAAAATATTAAAAATTGATCATTTAAATATTAATATTTTATTTATAATTTAA
8415443 ATTTTATTAT
Statistics
Matches: 113, Mismatches: 10, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
130 7 0.06
131 78 0.69
132 28 0.25
ACGTcount: A:0.40, C:0.02, G:0.03, T:0.55
Consensus pattern (130 bp):
TAATTTAAATGTTATTATGATTATTTATTTTTAATTCAATTTATTTTTTAAACATTAAAAATGTA
TAATTTATTTAAAATATTAAAAATTGATCATTTAAATATTAATATTTTATTTATAATTTAATCAT
Found at i:8415470 original size:42 final size:42
Alignment explanation
Indices: 8415368--8415475 Score: 94
Period size: 42 Copynumber: 2.6 Consensus size: 42
8415358 TATTTTTTAA
* * * * *
8415368 ATATTAATAATTTATATTTTATTTATAATATTAATAATTTATC
1 ATATTATTTATTTATATTTAATTTATAATATTAA-ATTTTATT
** * *
8415411 AT-TTAAATATTAATATTTTATTTATAAT-TTAAATTTTATT
1 ATATTATTTATTTATATTTAATTTATAATATTAAATTTTATT
*
8415451 ATGATTATTTATTTTTATTTAATTT
1 AT-ATTATTTATTTATATTTAATTT
8415476 TATCTTTTAA
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
40 8 0.15
41 4 0.08
42 39 0.74
43 2 0.04
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.60
Consensus pattern (42 bp):
ATATTATTTATTTATATTTAATTTATAATATTAAATTTTATT
Found at i:8415525 original size:69 final size:72
Alignment explanation
Indices: 8415358--8415530 Score: 198
Period size: 69 Copynumber: 2.4 Consensus size: 72
8415348 TATTTCAATT
*
8415358 TATTTTTTAAATATTAATAATTTA-TATTTTATTTATAATATTAATAATTTATCATTTAAATATT
1 TATTTTTTAAATATTAATAATTGATTA-TTTATTTATAATATTAAT-ATTTATCATTTAAATATT
*
8415422 AATATTTTA
64 AATAATTTA
* * * *
8415431 T-TTATAATTTAAAT-TTTATTA-TGATTATTTATTT-TTAT-TTAAT-TTTATCTTTTAAATAT
1 TATT-T--TTTAAATATTAATAATTGATTATTTATTTATAATATTAATATTTATCATTTAAATAT
8415490 TAATAATTTA
63 TAATAATTTA
8415500 TATTTTTTAAATATTAATAATTGATTATTTA
1 TATTTTTTAAATATTAATAATTGATTATTTA
8415531 AGTNNNNNNN
Statistics
Matches: 85, Mismatches: 8, Indels: 18
0.77 0.07 0.16
Matches are distributed among these distances:
67 7 0.08
68 5 0.06
69 36 0.42
70 2 0.02
71 5 0.06
72 5 0.06
73 11 0.13
74 7 0.08
75 7 0.08
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.60
Consensus pattern (72 bp):
TATTTTTTAAATATTAATAATTGATTATTTATTTATAATATTAATATTTATCATTTAAATATTAA
TAATTTA
Found at i:8420751 original size:55 final size:54
Alignment explanation
Indices: 8420667--8420775 Score: 200
Period size: 55 Copynumber: 2.0 Consensus size: 54
8420657 ATATGTATCA
8420667 TTAGGTAGTTGTTGTGCACAAATCCTTTGGATCAAGCAACAATTAAAAGACTAT
1 TTAGGTAGTTGTTGTGCACAAATCCTTTGGATCAAGCAACAATTAAAAGACTAT
*
8420721 NTTAGGTAGTTGTTGTGTACAAATCCTTTGGATCAAGCAACAATTAAAAGACTAT
1 -TTAGGTAGTTGTTGTGCACAAATCCTTTGGATCAAGCAACAATTAAAAGACTAT
8420776 GGAATAATTA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.32
Consensus pattern (54 bp):
TTAGGTAGTTGTTGTGCACAAATCCTTTGGATCAAGCAACAATTAAAAGACTAT
Found at i:8428385 original size:18 final size:18
Alignment explanation
Indices: 8428358--8428394 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
8428348 CCTATTAAAA
*
8428358 ATTAATTACCCTAACCCT
1 ATTAACTACCCTAACCCT
8428376 ATTAACTACCCTAACCCT
1 ATTAACTACCCTAACCCT
8428394 A
1 A
8428395 ACCCTAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.35, C:0.35, G:0.00, T:0.30
Consensus pattern (18 bp):
ATTAACTACCCTAACCCT
Found at i:8434644 original size:22 final size:22
Alignment explanation
Indices: 8434619--8434685 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 22
8434609 TAGCTTTTAA
* *
8434619 GCATTGCGTGATTGGGTTGTAG
1 GCATTGCGTGACTGGGTTATAG
* * * * *
8434641 GCATAGTGTGACTAGTTTTTAG
1 GCATTGCGTGACTGGGTTATAG
*
8434663 GTATTGCGTGACTGGGTTATAG
1 GCATTGCGTGACTGGGTTATAG
8434685 G
1 G
8434686 GGTTACAAGA
Statistics
Matches: 33, Mismatches: 12, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.18, C:0.09, G:0.36, T:0.37
Consensus pattern (22 bp):
GCATTGCGTGACTGGGTTATAG
Found at i:8434746 original size:22 final size:22
Alignment explanation
Indices: 8434714--8434756 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
8434704 TAGGCATTAA
* *
8434714 GTGACTGGGTTGTATGGATTGT
1 GTGACTAGGTTGTAAGGATTGT
8434736 GTGACTAGGTTGTAAGGATTG
1 GTGACTAGGTTGTAAGGATTG
8434757 CAGGACTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.19, C:0.05, G:0.40, T:0.37
Consensus pattern (22 bp):
GTGACTAGGTTGTAAGGATTGT
Found at i:8435727 original size:42 final size:42
Alignment explanation
Indices: 8435663--8435746 Score: 123
Period size: 42 Copynumber: 2.0 Consensus size: 42
8435653 TAGTACAGAA
* * * *
8435663 CATGCCACAACTGTTATGTTAGAAGATGTTTAGTGCGATGAC
1 CATGCCACAACTATTATCTTAGAAGATGTTCAATGCGATGAC
*
8435705 CATGTCACAACTATTATCTTAGAAGATGTTCAATGCGATGAC
1 CATGCCACAACTATTATCTTAGAAGATGTTCAATGCGATGAC
8435747 TTTATTTATG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (42 bp):
CATGCCACAACTATTATCTTAGAAGATGTTCAATGCGATGAC
Found at i:8437468 original size:73 final size:72
Alignment explanation
Indices: 8437284--8437477 Score: 243
Period size: 72 Copynumber: 2.7 Consensus size: 72
8437274 AAGAATATTG
*
8437284 AGAA-ATAGAACCAACTTAGTCGACCAAGATGAGAGTTAGTCGACTAAGAAGCTGCTGCCAAAAT
1 AGAAGATAGAACCAACTTAGTCGACCAAGAAGAGAGTTAGTCGACTAAGAAGCTGCTGCCAAAAT
8437348 CTGGACT
66 CTGGACT
** * * * * *
8437355 TCAAGACAGAACCAACTTAGTTGATCAAGAA-ATGAGTTAGTCGACTAA-ATA-CTCTCTGCCAG
1 AGAAGATAGAACCAACTTAGTCGACCAAGAAGA-GAGTTAGTCGACTAAGA-AGCT-GCTGCCAA
8437417 AATCTGCGACT
63 AATCTG-GACT
*
8437428 AGAAGATAGAACCAACTTAGTCGACCAAGAAGAAAGTTAGTCGACTAAGA
1 AGAAGATAGAACCAACTTAGTCGACCAAGAAGAGAGTTAGTCGACTAAGA
8437478 GCTCTCTGTC
Statistics
Matches: 102, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
71 6 0.06
72 50 0.49
73 44 0.43
74 2 0.02
ACGTcount: A:0.39, C:0.20, G:0.21, T:0.21
Consensus pattern (72 bp):
AGAAGATAGAACCAACTTAGTCGACCAAGAAGAGAGTTAGTCGACTAAGAAGCTGCTGCCAAAAT
CTGGACT
Found at i:8437483 original size:73 final size:72
Alignment explanation
Indices: 8437284--8437485 Score: 250
Period size: 73 Copynumber: 2.8 Consensus size: 72
8437274 AAGAATATTG
* *
8437284 AGAA-ATAGAACCAACTTAGTCGACCAAGATGAGAGTTAGTCGACTAAGAAGCT-GCTGCCAAAA
1 AGAAGATAGAACCAACTTAGTCGACCAAGAAGAGAGTTAGTCGACTAAG-AGCTCTCTGCCAAAA
8437347 TCTGGACT
65 TCTGGACT
** * * * * *
8437355 TCAAGACAGAACCAACTTAGTTGATCAAGAA-ATGAGTTAGTCGACTAA-ATACTCTCTGCCAGA
1 AGAAGATAGAACCAACTTAGTCGACCAAGAAGA-GAGTTAGTCGACTAAGA-GCTCTCTGCCAAA
8437418 ATCTGCGACT
64 ATCTG-GACT
*
8437428 AGAAGATAGAACCAACTTAGTCGACCAAGAAGAAAGTTAGTCGACTAAGAGCTCTCTG
1 AGAAGATAGAACCAACTTAGTCGACCAAGAAGAGAGTTAGTCGACTAAGAGCTCTCTG
8437486 TCTGCAATTT
Statistics
Matches: 108, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
70 1 0.01
71 5 0.05
72 49 0.45
73 51 0.47
74 2 0.02
ACGTcount: A:0.38, C:0.20, G:0.21, T:0.21
Consensus pattern (72 bp):
AGAAGATAGAACCAACTTAGTCGACCAAGAAGAGAGTTAGTCGACTAAGAGCTCTCTGCCAAAAT
CTGGACT
Found at i:8444803 original size:23 final size:23
Alignment explanation
Indices: 8444755--8444809 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 23
8444745 AATGCATAAG
* * *
8444755 TCACGCAAT-GCCTATCTACCAG
1 TCACGCAATGGCATATCAACCAC
*
8444777 TCACGCAATGGCATATCAACTAC
1 TCACGCAATGGCATATCAACCAC
*
8444800 TCACGTAATG
1 TCACGCAATG
8444810 ACTAAAAACC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 9 0.33
23 18 0.67
ACGTcount: A:0.31, C:0.31, G:0.15, T:0.24
Consensus pattern (23 bp):
TCACGCAATGGCATATCAACCAC
Found at i:8444811 original size:83 final size:83
Alignment explanation
Indices: 8444692--8444869 Score: 239
Period size: 83 Copynumber: 2.1 Consensus size: 83
8444682 GTAATGCCTA
* * * *
8444692 AGTCACGCAATGCCATATCAACTAGTTATGTAATGACTAAAAACCATTCACACAATGCATAAGTC
1 AGTCACGCAATGCCATATCAACTACTCACGTAATGACTAAAAACCATTCACACAATGCATAACTC
* *
8444757 ACGCAATGCCTATCTACC
66 ACACAATGCATATCTACC
* ** *
8444775 AGTCACGCAATGGCATATCAACTACTCACGTAATGACTAAAAACCATTCACGTAATGCGTAACTC
1 AGTCACGCAATGCCATATCAACTACTCACGTAATGACTAAAAACCATTCACACAATGCATAACTC
*
8444840 ACATAATGCATATCTACC
66 ACACAATGCATATCTACC
* *
8444858 AATCATGCAATG
1 AGTCACGCAATG
8444870 ACTAAAAACC
Statistics
Matches: 82, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
83 82 1.00
ACGTcount: A:0.38, C:0.26, G:0.12, T:0.24
Consensus pattern (83 bp):
AGTCACGCAATGCCATATCAACTACTCACGTAATGACTAAAAACCATTCACACAATGCATAACTC
ACACAATGCATATCTACC
Found at i:8444935 original size:23 final size:22
Alignment explanation
Indices: 8444882--8444940 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 22
8444872 TAAAAACCAT
** *
8444882 TCACACAATGCCTATTTACTAG
1 TCACACAATGCCTATCAACTAA
**
8444904 TCATGCAATGCCATATCAACTAA
1 TCACACAATGCC-TATCAACTAA
8444927 TCACACAATGCCTA
1 TCACACAATGCCTA
8444941 AAAAAATGTC
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
22 12 0.41
23 17 0.59
ACGTcount: A:0.36, C:0.29, G:0.08, T:0.27
Consensus pattern (22 bp):
TCACACAATGCCTATCAACTAA
Found at i:8446388 original size:47 final size:47
Alignment explanation
Indices: 8446320--8446422 Score: 127
Period size: 47 Copynumber: 2.2 Consensus size: 47
8446310 AAAGTAATAT
* * * * *
8446320 TGGTCGTTAAAAGCATTCCAAGTTAGTAGCACTTTAATCCCATATTA
1 TGGTCATTAAAAGCATCCCAAGTCAATAGCACTTTAAGCCCATATTA
* *
8446367 TGGTCATTAGAAA-CATCCCAAGTCAATAGCACTTTAAGCCCATGTTC
1 TGGTCATTA-AAAGCATCCCAAGTCAATAGCACTTTAAGCCCATATTA
8446414 TGGTCATTA
1 TGGTCATTA
8446423 TAATTTAGAC
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
47 45 0.94
48 3 0.06
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (47 bp):
TGGTCATTAAAAGCATCCCAAGTCAATAGCACTTTAAGCCCATATTA
Found at i:8447676 original size:33 final size:33
Alignment explanation
Indices: 8447625--8447687 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 33
8447615 AGGCCTCAGA
**
8447625 TGGAGTTGGGTTACGAGCAAGATGTGGGGCAAG
1 TGGAGTTGGACTACGAGCAAGATGTGGGGCAAG
*
8447658 TGGAGTTGGACTATGAGCAAGATGTGGGGC
1 TGGAGTTGGACTACGAGCAAGATGTGGGGC
8447688 TTTAGTTAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.24, C:0.10, G:0.44, T:0.22
Consensus pattern (33 bp):
TGGAGTTGGACTACGAGCAAGATGTGGGGCAAG
Found at i:8449777 original size:25 final size:25
Alignment explanation
Indices: 8449749--8450054 Score: 296
Period size: 25 Copynumber: 12.2 Consensus size: 25
8449739 ACAATCACAT
8449749 AATGCCATACAGATAACAGTCACGC
1 AATGCCATACAGATAACAGTCACGC
* * * * *
8449774 AATGACTTACTA-ATAACAATTATGC
1 AATGCCATAC-AGATAACAGTCACGC
* * * *
8449799 AATTCCTTAAAGATAACAATCACGC
1 AATGCCATACAGATAACAGTCACGC
* *
8449824 AATGACC-TATAGATAACAATCACGC
1 AATG-CCATACAGATAACAGTCACGC
* * * *
8449849 AATGACTTACAGATAACAATCATGC
1 AATGCCATACAGATAACAGTCACGC
* *
8449874 AATGCCATATAGATAACAGTCACAC
1 AATGCCATACAGATAACAGTCACGC
* * *
8449899 AATGACC-TACAGATAATAGACACAC
1 AATG-CCATACAGATAACAGTCACGC
*
8449924 AATGCCATACAGATAAAAGTCACGC
1 AATGCCATACAGATAACAGTCACGC
*
8449949 AATGCCATACAGATAGCAGTCACGC
1 AATGCCATACAGATAACAGTCACGC
* * *
8449974 AATGATC-TATAGATAACAGTCACGT
1 AATG-CCATACAGATAACAGTCACGC
* *
8449999 AATGCCATATAGATAATAGTCACGC
1 AATGCCATACAGATAACAGTCACGC
*
8450024 AATGCCATACAGATAACAGTCATGC
1 AATGCCATACAGATAACAGTCACGC
8450049 AATGCC
1 AATGCC
8450055 CTATCAAGTA
Statistics
Matches: 234, Mismatches: 39, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
24 5 0.02
25 223 0.95
26 6 0.03
ACGTcount: A:0.42, C:0.23, G:0.14, T:0.21
Consensus pattern (25 bp):
AATGCCATACAGATAACAGTCACGC
Found at i:8450103 original size:45 final size:45
Alignment explanation
Indices: 8450049--8450165 Score: 103
Period size: 45 Copynumber: 2.6 Consensus size: 45
8450039 ACAGTCATGC
* ** * *
8450049 AATGCCCTATCAAGTAGTCGCACAATGACT-TAAACTCAGTCACAA
1 AATGACCTATCAACAAGTCGCACAATGACTACAAAC-CAGTAACAA
* * * *
8450094 AATGACCTATGAACAAGTCGCATATTGACTACAAACCAGTAACAT
1 AATGACCTATCAACAAGTCGCACAATGACTACAAACCAGTAACAA
* *
8450139 AATGACCTACCAACCAA-TCACACAATG
1 AATGACCTATCAA-CAAGTCGCACAATG
8450166 CCAAAAACCC
Statistics
Matches: 56, Mismatches: 14, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
45 49 0.88
46 7 0.12
ACGTcount: A:0.41, C:0.26, G:0.12, T:0.21
Consensus pattern (45 bp):
AATGACCTATCAACAAGTCGCACAATGACTACAAACCAGTAACAA
Found at i:8454619 original size:21 final size:20
Alignment explanation
Indices: 8454594--8454635 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
8454584 AGAGAAAAGG
8454594 AAGA-AAAAAAGAAAAACCA
1 AAGAGAAAAAAGAAAAACCA
* *
8454613 AAGAGAAACAAGAAAATCCA
1 AAGAGAAAAAAGAAAAACCA
8454633 AAG
1 AAG
8454636 GGGAAATCAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.71, C:0.12, G:0.14, T:0.02
Consensus pattern (20 bp):
AAGAGAAAAAAGAAAAACCA
Found at i:8456810 original size:60 final size:59
Alignment explanation
Indices: 8456734--8456890 Score: 170
Period size: 60 Copynumber: 2.6 Consensus size: 59
8456724 GGTCATGAAA
* *
8456734 GAAATTCATTCTCGCTGCAGCGAGAAACTTTCTGTTTCTGGGTCCCAATTTCACTGCAAC
1 GAAATT-AATCTCGCTGCAGCGAGAAACTTTCTGTTTCTGGGTCACAATTTCACTGCAAC
* * * ** *
8456794 GAAATTAACTCTCGCTGCAACGAGAAACTTTTTGTTTCTGGGTTACAATTTCGTTGCAGC
1 GAAATTAA-TCTCGCTGCAGCGAGAAACTTTCTGTTTCTGGGTCACAATTTCACTGCAAC
* * ** *
8456854 GAGATTCAATCTTGCACCAGCGAAAAACTTTCTGTTT
1 GAAATT-AATCTCGCTGCAGCGAGAAACTTTCTGTTT
8456891 TGTCTCCTAT
Statistics
Matches: 80, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
59 1 0.01
60 77 0.96
61 2 0.03
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.33
Consensus pattern (59 bp):
GAAATTAATCTCGCTGCAGCGAGAAACTTTCTGTTTCTGGGTCACAATTTCACTGCAAC
Found at i:8461673 original size:2 final size:2
Alignment explanation
Indices: 8461666--8461698 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
8461656 CATGCACAAC
*
8461666 AT AT AT AT CT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8461699 CACCAACATA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8464352 original size:20 final size:19
Alignment explanation
Indices: 8464327--8464365 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
8464317 TAAATAAGAT
8464327 CTTTTTAATCCCTCTAAATA
1 CTTTTT-ATCCCTCTAAATA
*
8464347 CTTTTTCTCCCTCTAAATA
1 CTTTTTATCCCTCTAAATA
8464366 GTTATTCTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.26, C:0.28, G:0.00, T:0.46
Consensus pattern (19 bp):
CTTTTTATCCCTCTAAATA
Found at i:8464373 original size:19 final size:19
Alignment explanation
Indices: 8464335--8464373 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
8464325 ATCTTTTTAA
*
8464335 TCCCTCTAAATACTTTTTC
1 TCCCTCTAAATACTTATTC
*
8464354 TCCCTCTAAATAGTTATTC
1 TCCCTCTAAATACTTATTC
8464373 T
1 T
8464374 TTTAAGTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.23, C:0.28, G:0.03, T:0.46
Consensus pattern (19 bp):
TCCCTCTAAATACTTATTC
Found at i:8464679 original size:9 final size:10
Alignment explanation
Indices: 8464666--8464703 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
8464656 TATAATTAAT
8464666 TATATTAAAAA
1 TATA-TAAAAA
8464677 TATATAAAAA
1 TATATAAAAA
8464687 T-TA-AAAAA
1 TATATAAAAA
8464695 TATATAAAA
1 TATATAAAA
8464704 GTAAAAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
8 6 0.24
9 4 0.16
10 11 0.44
11 4 0.16
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (10 bp):
TATATAAAAA
Found at i:8464691 original size:17 final size:17
Alignment explanation
Indices: 8464669--8464713 Score: 63
Period size: 18 Copynumber: 2.6 Consensus size: 17
8464659 AATTAATTAT
8464669 ATTAAAAATATATAAAA
1 ATTAAAAATATATAAAA
8464686 ATTAAAAAATATATAAAA
1 ATT-AAAAATATATAAAA
* *
8464704 GTAAAAAATA
1 ATTAAAAATA
8464714 ATTAATAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 10 0.40
18 15 0.60
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (17 bp):
ATTAAAAATATATAAAA
Found at i:8464695 original size:18 final size:17
Alignment explanation
Indices: 8464672--8464713 Score: 66
Period size: 17 Copynumber: 2.4 Consensus size: 17
8464662 TAATTATATT
*
8464672 AAAAATATATAAAAATTA
1 AAAAATATAT-AAAAGTA
8464690 AAAAATATATAAAAGTA
1 AAAAATATATAAAAGTA
8464707 AAAAATA
1 AAAAATA
8464714 ATTAATAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 13 0.57
18 10 0.43
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.24
Consensus pattern (17 bp):
AAAAATATATAAAAGTA
Found at i:8465889 original size:27 final size:28
Alignment explanation
Indices: 8465843--8465915 Score: 78
Period size: 27 Copynumber: 2.6 Consensus size: 28
8465833 TTATTTTTAT
* * *
8465843 TTTATTTTTAAATATTAATAAATT-ATAA
1 TTTACTTTAAAATTTTAAT-AATTGATAA
8465871 TTTA-TTTAAAATTTTAATAATTGATAA
1 TTTACTTTAAAATTTTAATAATTGATAA
8465898 TTTAACTATTAAAATTTT
1 TTT-ACT-TTAAAATTTT
8465916 TAAATATTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
26 4 0.10
27 19 0.49
28 5 0.13
29 1 0.03
30 10 0.26
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.53
Consensus pattern (28 bp):
TTTACTTTAAAATTTTAATAATTGATAA
Found at i:8465899 original size:16 final size:15
Alignment explanation
Indices: 8465876--8465977 Score: 72
Period size: 16 Copynumber: 6.7 Consensus size: 15
8465866 TATAATTTAT
8465876 TTAAAATTTTAATAA
1 TTAAAATTTTAATAA
*
8465891 TTGATAA-TTTAACT-A
1 TT-AAAATTTTAA-TAA
8465906 TTAAAATTTTTAA-ATA
1 TTAAAA-TTTTAATA-A
8465922 TTAAAATTTTAATAA
1 TTAAAATTTTAATAA
*
8465937 TTGATAA-TTTAACT-A
1 TT-AAAATTTTAA-TAA
8465952 TTAAAATTTTTAA-ATA
1 TTAAAA-TTTTAATA-A
8465968 TTAAAATTTT
1 TTAAAATTTT
8465978 TAAATAGTAA
Statistics
Matches: 70, Mismatches: 4, Indels: 26
0.70 0.04 0.26
Matches are distributed among these distances:
14 6 0.09
15 31 0.44
16 33 0.47
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (15 bp):
TTAAAATTTTAATAA
Found at i:8465927 original size:46 final size:46
Alignment explanation
Indices: 8465876--8465977 Score: 204
Period size: 46 Copynumber: 2.2 Consensus size: 46
8465866 TATAATTTAT
8465876 TTAAAATTTTAATAATTGATAATTTAACTATTAAAATTTTTAAATA
1 TTAAAATTTTAATAATTGATAATTTAACTATTAAAATTTTTAAATA
8465922 TTAAAATTTTAATAATTGATAATTTAACTATTAAAATTTTTAAATA
1 TTAAAATTTTAATAATTGATAATTTAACTATTAAAATTTTTAAATA
8465968 TTAAAATTTT
1 TTAAAATTTT
8465978 TAAATAGTAA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 56 1.00
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (46 bp):
TTAAAATTTTAATAATTGATAATTTAACTATTAAAATTTTTAAATA
Done.