Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39371879
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2227820 characters in sequence are not A, C, G, or T
File 23 of 103
Found at i:8465978 original size:16 final size:16
Alignment explanation
Indices: 8465898--8465993 Score: 110
Period size: 16 Copynumber: 6.1 Consensus size: 16
8465888 TAATTGATAA
*
8465898 TTTAACTATTAAAATT
1 TTTAAATATTAAAATT
8465914 TTTAAATATTAAAA-T
1 TTTAAATATTAAAATT
*
8465929 TTT-AATAATTGATAA--
1 TTTAAAT-ATT-AAAATT
*
8465944 TTTAACTATTAAAATT
1 TTTAAATATTAAAATT
8465960 TTTAAATATTAAAATT
1 TTTAAATATTAAAATT
*
8465976 TTTAAATAGTAAAATT
1 TTTAAATATTAAAATT
8465992 TT
1 TT
8465994 ATTTATTATT
Statistics
Matches: 69, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
14 6 0.09
15 13 0.19
16 50 0.72
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (16 bp):
TTTAAATATTAAAATT
Found at i:8465992 original size:46 final size:46
Alignment explanation
Indices: 8465876--8465992 Score: 173
Period size: 46 Copynumber: 2.5 Consensus size: 46
8465866 TATAATTTAT
* *
8465876 TTAAAATTTTAATAATTGATAATTTAACTATTAAAATTTTTAAATA
1 TTAAAATTTTAATAATAGAAAATTTAACTATTAAAATTTTTAAATA
* *
8465922 TTAAAATTTTAATAATTGATAATTTAACTATTAAAATTTTTAAATA
1 TTAAAATTTTAATAATAGAAAATTTAACTATTAAAATTTTTAAATA
*
8465968 TTAAAATTTTTA-AATAGTAAAATTT
1 TTAAAATTTTAATAATAG-AAAATTT
8465993 TATTTATTAT
Statistics
Matches: 67, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
45 4 0.06
46 63 0.94
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.48
Consensus pattern (46 bp):
TTAAAATTTTAATAATAGAAAATTTAACTATTAAAATTTTTAAATA
Found at i:8466782 original size:22 final size:22
Alignment explanation
Indices: 8466705--8466783 Score: 60
Period size: 22 Copynumber: 3.7 Consensus size: 22
8466695 AAAATAGTAT
*
8466705 TTTAAACATAATAATT-TTAA-A
1 TTTAAAAATAA-AATTATTAATA
* *
8466726 -TTATAAATAAAA-CATTAATA
1 TTTAAAAATAAAATTATTAATA
* *
8466746 TTT-AAATTATTAATTATTAATA
1 TTTAAAAATA-AAATTATTAATA
8466768 TTTAAAAATAAAATTA
1 TTTAAAAATAAAATTA
8466784 AAAAATAGAT
Statistics
Matches: 43, Mismatches: 9, Indels: 11
0.68 0.14 0.17
Matches are distributed among these distances:
19 6 0.14
20 13 0.30
21 4 0.09
22 15 0.35
23 5 0.12
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (22 bp):
TTTAAAAATAAAATTATTAATA
Found at i:8466936 original size:16 final size:16
Alignment explanation
Indices: 8466915--8466948 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
8466905 AATTATAAAT
*
8466915 AAAATATTAATATTTA
1 AAAATATTAACATTTA
8466931 AAAATATTAACATTTA
1 AAAATATTAACATTTA
8466947 AA
1 AA
8466949 TTATAAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (16 bp):
AAAATATTAACATTTA
Found at i:8467010 original size:27 final size:27
Alignment explanation
Indices: 8466953--8467010 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
8466943 TTTAAATTAT
* * *
8466953 AAATTATTAATATTTTAAATAAATTAC
1 AAATTATTAATATTTAAAACAAAATAC
*
8466980 AAATTATTAATGTTTAAAAACAAAATA-
1 AAATTATTAATATTT-AAAACAAAATAC
8467007 AAAT
1 AAAT
8467011 AAAAATAAGT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
27 18 0.69
28 8 0.31
ACGTcount: A:0.57, C:0.03, G:0.02, T:0.38
Consensus pattern (27 bp):
AAATTATTAATATTTAAAACAAAATAC
Found at i:8467183 original size:117 final size:115
Alignment explanation
Indices: 8467060--8467272 Score: 329
Period size: 117 Copynumber: 1.8 Consensus size: 115
8467050 TTTTAATTAT
* * *
8467060 ATATTATAAAAAATTCATATTTTAAATATAAAAATTAATTATGATTATTAATGTTTTAATC-ATA
1 ATATTATAAAAAATTAATATTTTAAATATAAAAATTAATTAAGATTATTAATATTTTAA-CGATA
*
8467124 ATAATATTTAGATTATCAAAAAAAATATTAATATTTTTTAAAATAAAAATAAA
65 ATAATATTTAAATTAT-AAAAAAAA-ATTAATATTTTTTAAAATAAAAATAAA
* *
8467177 ATATTATAAAAAATTAATATTTTAAATTTAAAAATTACTTAAGATTATTAATATTTTAACGATAA
1 ATATTATAAAAAATTAATATTTTAAATATAAAAATTAATTAAGATTATTAATATTTTAACGATAA
*
8467242 TAATATTTAAATTATAAATAAAAATTAATAT
66 TAATATTTAAATTATAAAAAAAAATTAATAT
8467273 ATAAAAATGT
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
115 8 0.09
116 8 0.09
117 72 0.82
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (115 bp):
ATATTATAAAAAATTAATATTTTAAATATAAAAATTAATTAAGATTATTAATATTTTAACGATAA
TAATATTTAAATTATAAAAAAAAATTAATATTTTTTAAAATAAAAATAAA
Found at i:8467654 original size:39 final size:38
Alignment explanation
Indices: 8467587--8467681 Score: 138
Period size: 39 Copynumber: 2.5 Consensus size: 38
8467577 TATGTTCAAC
* * *
8467587 CATAACCTTTAC-AATCGTTGTCTTTTCAAGGGTAAAG
1 CATAACCTTCACAAATCATTGCCTTTTCAAGGGTAAAG
8467624 CATAACCTATCACAAATCATTGCCTTTTCAAGGGTAAAG
1 CATAACCT-TCACAAATCATTGCCTTTTCAAGGGTAAAG
8467663 CATAACCTTTCACAAATCA
1 CATAACC-TTCACAAATCA
8467682 CTATCTTTCA
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
37 8 0.15
38 3 0.06
39 40 0.77
40 1 0.02
ACGTcount: A:0.35, C:0.23, G:0.12, T:0.31
Consensus pattern (38 bp):
CATAACCTTCACAAATCATTGCCTTTTCAAGGGTAAAG
Found at i:8477121 original size:22 final size:20
Alignment explanation
Indices: 8477082--8477132 Score: 66
Period size: 22 Copynumber: 2.5 Consensus size: 20
8477072 GTTTTGCCAA
8477082 TTAGTTTTTTTAGATTTAGT
1 TTAGTTTTTTTAGATTTAGT
*
8477102 TTAGTTATTATTTAGTTTTAGT
1 TTAGTT-TT-TTTAGATTTAGT
*
8477124 TTTGTTTTT
1 TTAGTTTTT
8477133 AATTAATCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 7 0.26
21 4 0.15
22 16 0.59
ACGTcount: A:0.18, C:0.00, G:0.14, T:0.69
Consensus pattern (20 bp):
TTAGTTTTTTTAGATTTAGT
Found at i:8477130 original size:11 final size:11
Alignment explanation
Indices: 8477082--8477131 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
8477072 GTTTTGCCAA
8477082 TTAGTTTT--T
1 TTAGTTTTAGT
*
8477091 TTAGATTTAGT
1 TTAGTTTTAGT
8477102 TTAGTTATTA-T
1 TTAGTT-TTAGT
8477113 TTAGTTTTAGT
1 TTAGTTTTAGT
*
8477124 TTTGTTTT
1 TTAGTTTT
8477132 TAATTAATCA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
9 7 0.21
10 3 0.09
11 21 0.62
12 3 0.09
ACGTcount: A:0.18, C:0.00, G:0.14, T:0.68
Consensus pattern (11 bp):
TTAGTTTTAGT
Found at i:8493815 original size:3 final size:3
Alignment explanation
Indices: 8493809--8493873 Score: 60
Period size: 3 Copynumber: 22.0 Consensus size: 3
8493799 GAGGAAGAGC
* * * * *
8493809 AGA AGA AGA AAA AGA AGA AGG AGA AGG AGA AGA AGA TGA AGA TGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
* *
8493857 AGA A-A ATA AAA AGA AGA
1 AGA AGA AGA AGA AGA AGA
8493874 GTAATAGAAG
Statistics
Matches: 49, Mismatches: 12, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
2 2 0.04
3 47 0.96
ACGTcount: A:0.65, C:0.00, G:0.31, T:0.05
Consensus pattern (3 bp):
AGA
Found at i:8493849 original size:9 final size:9
Alignment explanation
Indices: 8493735--8493873 Score: 79
Period size: 9 Copynumber: 15.6 Consensus size: 9
8493725 AGGAAGAGAT
*
8493735 GAAGAAAAA
1 GAAGAAGAA
*
8493744 GAAGACGAA
1 GAAGAAGAA
8493753 GAA-AGAGAA
1 GAAGA-AGAA
*
8493762 GGAGAAGAA
1 GAAGAAGAA
** *
8493771 GTGGAAGAG
1 GAAGAAGAA
8493780 GAAGAATG-A
1 GAAGAA-GAA
*
8493789 GAAGAATAA
1 GAAGAAGAA
*
8493798 GGAGGAAG-A
1 -GAAGAAGAA
*
8493807 GCAGAAGAA
1 GAAGAAGAA
*
8493816 GAAAAAGAA
1 GAAGAAGAA
*
8493825 GAAGGAGAA
1 GAAGAAGAA
*
8493834 GGAGAAGAA
1 GAAGAAGAA
* *
8493843 GATGAAGAT
1 GAAGAAGAA
8493852 GAAGAAGAA
1 GAAGAAGAA
* *
8493861 -AATAAAAA
1 GAAGAAGAA
8493869 GAAGA
1 GAAGA
8493874 GTAATAGAAG
Statistics
Matches: 94, Mismatches: 29, Indels: 14
0.69 0.21 0.10
Matches are distributed among these distances:
8 12 0.13
9 75 0.80
10 7 0.07
ACGTcount: A:0.60, C:0.01, G:0.35, T:0.04
Consensus pattern (9 bp):
GAAGAAGAA
Found at i:8493849 original size:15 final size:13
Alignment explanation
Indices: 8493743--8493859 Score: 65
Period size: 15 Copynumber: 8.1 Consensus size: 13
8493733 ATGAAGAAAA
8493743 AGAAGACGAAGAAAG
1 AGAAGA-GAAG-AAG
8493758 AGAAGGAGAAGAAG
1 AGAA-GAGAAGAAG
*
8493772 TGGAAGAGGAAGAATG
1 -AGAAGA-GAAGAA-G
* *
8493788 AGAAGAATAAGGAG
1 AGAAG-AGAAGAAG
*
8493802 -GAAGAGCAGAAG
1 AGAAGAGAAGAAG
*
8493814 AAGAAAAAGAAGAAGG
1 -AG-AAGAGAAGAA-G
8493830 AGAAGGAGAAGAAG
1 AGAA-GAGAAGAAG
8493844 ATGAAGATGAAGAAG
1 A-GAAGA-GAAGAAG
8493859 A
1 A
8493860 AAATAAAAAG
Statistics
Matches: 80, Mismatches: 10, Indels: 24
0.70 0.09 0.21
Matches are distributed among these distances:
12 5 0.06
13 4 0.05
14 13 0.16
15 53 0.66
16 5 0.06
ACGTcount: A:0.56, C:0.02, G:0.38, T:0.04
Consensus pattern (13 bp):
AGAAGAGAAGAAG
Found at i:8494755 original size:3 final size:3
Alignment explanation
Indices: 8494738--8494832 Score: 79
Period size: 3 Copynumber: 32.3 Consensus size: 3
8494728 AACAGGCACT
* *
8494738 AAG AA- AAG GAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG GAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
* * * * * * *
8494785 AAAC AAG ATG -AG AAG AAT AAG AAG -GG AAA AAG GAG AAG GAG AAG
1 -AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
8494829 AAG A
1 AAG A
8494833 CGACTATGTG
Statistics
Matches: 70, Mismatches: 18, Indels: 8
0.73 0.19 0.08
Matches are distributed among these distances:
2 4 0.06
3 64 0.91
4 2 0.03
ACGTcount: A:0.62, C:0.01, G:0.35, T:0.02
Consensus pattern (3 bp):
AAG
Found at i:8498269 original size:21 final size:21
Alignment explanation
Indices: 8498231--8498270 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
8498221 GGATGACATA
* *
8498231 GGCAGCAGTAGTAATAGCATT
1 GGCAGCAGCAGCAATAGCATT
*
8498252 GGCAGCAGCAGCATTAGCA
1 GGCAGCAGCAGCAATAGCA
8498271 ATCAAGACGT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.33, C:0.20, G:0.30, T:0.17
Consensus pattern (21 bp):
GGCAGCAGCAGCAATAGCATT
Found at i:8500958 original size:76 final size:76
Alignment explanation
Indices: 8500826--8500987 Score: 261
Period size: 76 Copynumber: 2.1 Consensus size: 76
8500816 GATGCCATCT
* *
8500826 ATTTGAATTTTGGGTGATTCATAAAGAATAGGAAATTGCTTCCTACTTAAAATGAATTCCTAAAA
1 ATTTTAATTTTGAGTGATTCATAAAGAATAGGAAATTGCTTCCTACTTAAAATGAATTCCTAAAA
8500891 TTATGGTTAGC
66 TTATGGTTAGC
* * *
8500902 ATTTTAATTTTGAGTGATTCATAAAGAATAGGAAATTGTTTTCTACTTAAAGTGAATTCCTAAAA
1 ATTTTAATTTTGAGTGATTCATAAAGAATAGGAAATTGCTTCCTACTTAAAATGAATTCCTAAAA
*
8500967 TTATGGTTAGT
66 TTATGGTTAGC
*
8500978 ATTCTAATTT
1 ATTTTAATTT
8500988 GGGAGATTCA
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
76 79 1.00
ACGTcount: A:0.35, C:0.09, G:0.15, T:0.41
Consensus pattern (76 bp):
ATTTTAATTTTGAGTGATTCATAAAGAATAGGAAATTGCTTCCTACTTAAAATGAATTCCTAAAA
TTATGGTTAGC
Found at i:8500983 original size:37 final size:37
Alignment explanation
Indices: 8500868--8500983 Score: 85
Period size: 38 Copynumber: 3.1 Consensus size: 37
8500858 AAATTGCTTC
* *
8500868 CTACTTAAAATGAATTCCTAAAATTATGGTTAGCATT
1 CTACTTAAAGTGAATTCCTAAAATTATGGTTAGTATT
* * ** * * *
8500905 TTAATTTTGAGTG-ATTCATAAAGAATA-GGAAATT-GTTTT
1 CT-ACTTAAAGTGAATTCCTAAA-ATTATGG---TTAGTATT
8500944 CTACTTAAAGTGAATTCCTAAAATTATGGTTAGTATT
1 CTACTTAAAGTGAATTCCTAAAATTATGGTTAGTATT
8500981 CTA
1 CTA
8500984 ATTTGGGAGA
Statistics
Matches: 55, Mismatches: 16, Indels: 16
0.63 0.18 0.18
Matches are distributed among these distances:
36 2 0.04
37 18 0.33
38 19 0.35
39 14 0.25
40 2 0.04
ACGTcount: A:0.36, C:0.09, G:0.14, T:0.41
Consensus pattern (37 bp):
CTACTTAAAGTGAATTCCTAAAATTATGGTTAGTATT
Found at i:8502332 original size:12 final size:12
Alignment explanation
Indices: 8502315--8502341 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
8502305 ATATAAGATA
8502315 TAATTGGTAAAC
1 TAATTGGTAAAC
8502327 TAATTGGTAAAC
1 TAATTGGTAAAC
8502339 TAA
1 TAA
8502342 GTTACCTACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.44, C:0.07, G:0.15, T:0.33
Consensus pattern (12 bp):
TAATTGGTAAAC
Found at i:8504432 original size:16 final size:16
Alignment explanation
Indices: 8504411--8504442 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
8504401 TGCCATACAT
8504411 AGACAAATTAGAACAC
1 AGACAAATTAGAACAC
8504427 AGACAAATTAGAACAC
1 AGACAAATTAGAACAC
8504443 TACCTTAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.19, G:0.12, T:0.12
Consensus pattern (16 bp):
AGACAAATTAGAACAC
Found at i:8505433 original size:24 final size:24
Alignment explanation
Indices: 8505388--8505439 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
8505378 ATTAAAATAA
*
8505388 AAATAAAAAAAGAATCCTAATC-T
1 AAATAAAAAAAGAAACCTAATCTT
8505411 AAATAAAACAAAGAAAACC-AATCTT
1 AAATAAAA-AAAG-AAACCTAATCTT
8505436 AAAT
1 AAAT
8505440 CAACTAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
23 8 0.32
24 8 0.32
25 9 0.36
ACGTcount: A:0.63, C:0.13, G:0.04, T:0.19
Consensus pattern (24 bp):
AAATAAAAAAAGAAACCTAATCTT
Found at i:8509218 original size:29 final size:29
Alignment explanation
Indices: 8509163--8509219 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
8509153 AACAAGTTAA
* * *
8509163 GAGAAAAAGGTGTACGTGAATAGGTACAG
1 GAGAAAAAGGTGTACATGAACAAGTACAG
*
8509192 GAGAAAAAGGTGTCCATGAACAAGTACA
1 GAGAAAAAGGTGTACATGAACAAGTACA
8509220 AGAAAATAAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.44, C:0.11, G:0.30, T:0.16
Consensus pattern (29 bp):
GAGAAAAAGGTGTACATGAACAAGTACAG
Found at i:8509519 original size:35 final size:35
Alignment explanation
Indices: 8509480--8509581 Score: 123
Period size: 35 Copynumber: 2.9 Consensus size: 35
8509470 TTGTTCAGCA
* * * *
8509480 TGAAGTAGTGCTTCACTTGTTTTATTTGTTTTGTG
1 TGAAGTAATGCTTCACTTGTTCTACTTGTTTTATG
* * *
8509515 TGAAGTAATGTTTCACTTGTTCTACTTATTCTATG
1 TGAAGTAATGCTTCACTTGTTCTACTTGTTTTATG
* *
8509550 TGAAGTAATGCTTCACTAGTTCTAGTTGTTTT
1 TGAAGTAATGCTTCACTTGTTCTACTTGTTTT
8509582 CATTATTCAT
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
35 55 1.00
ACGTcount: A:0.20, C:0.12, G:0.19, T:0.50
Consensus pattern (35 bp):
TGAAGTAATGCTTCACTTGTTCTACTTGTTTTATG
Found at i:8509803 original size:15 final size:15
Alignment explanation
Indices: 8509776--8509817 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
8509766 CATTGTATCG
*
8509776 CTTT-GGCATTAACA
1 CTTTAGGCAGTAACA
8509790 CTTTAGGCAGTAACA
1 CTTTAGGCAGTAACA
* *
8509805 CCTTAGACAGTAA
1 CTTTAGGCAGTAA
8509818 TGCTTTACGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
14 4 0.17
15 20 0.83
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (15 bp):
CTTTAGGCAGTAACA
Found at i:8509831 original size:15 final size:15
Alignment explanation
Indices: 8509813--8509855 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
8509803 CACCTTAGAC
**
8509813 AGTAATGCTTTACGT
1 AGTAATGCTTTAAAT
*
8509828 AGTAACGCTTTAAAT
1 AGTAATGCTTTAAAT
8509843 AGTAATGCTTTAA
1 AGTAATGCTTTAA
8509856 CCTTAGGCAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (15 bp):
AGTAATGCTTTAAAT
Found at i:8509832 original size:30 final size:30
Alignment explanation
Indices: 8509798--8509854 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
8509788 CACTTTAGGC
*
8509798 AGTAACACCTTAGACAGTAATGCTTTACGT
1 AGTAACACCTTAAACAGTAATGCTTTACGT
* * *
8509828 AGTAACGCTTTAAATAGTAATGCTTTA
1 AGTAACACCTTAAACAGTAATGCTTTA
8509855 ACCTTAGGCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (30 bp):
AGTAACACCTTAAACAGTAATGCTTTACGT
Found at i:8512316 original size:72 final size:72
Alignment explanation
Indices: 8512174--8512389 Score: 231
Period size: 72 Copynumber: 3.0 Consensus size: 72
8512164 CAAGAAAGTG
* *
8512174 AATATGGATGGTAAAATGCCCACAAACATAGTTGTGAGAGTGGATGAGTAAGTCTCCATCGCTTA
1 AATATGGATGGTAAAATGCCCACAAACATAGTTGTGAGAGTGGATAAGTAAGTCTCCATCACTTA
8512239 ATTGTTA
66 ATTGTTA
*
8512246 AATATGGATGGTAAAATGCCCACAAACATAGTTATTG-GAGTGGATAAGTAAGTCTCCA-CTACT
1 AATATGGATGGTAAAATGCCCACAAACATAGTT-GTGAGAGTGGATAAGTAAGTCTCCATC-ACT
**
8512309 TGGTTGTTA
64 TAATTGTTA
* * * * * * ** * * * *
8512318 GATGTGGATGGTAACATG-CCATAAATATAAATTACGACAGTGGATGAGTAAGTCTCCACCACCT
1 AATATGGATGGTAAAATGCCCACAAACAT-AGTTGTGAGAGTGGATAAGTAAGTCTCCATCACTT
8512382 AATTGTTA
65 AATTGTTA
8512390 TAGGTGGATG
Statistics
Matches: 121, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
71 10 0.08
72 108 0.89
73 3 0.02
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (72 bp):
AATATGGATGGTAAAATGCCCACAAACATAGTTGTGAGAGTGGATAAGTAAGTCTCCATCACTTA
ATTGTTA
Found at i:8527421 original size:68 final size:68
Alignment explanation
Indices: 8527312--8527493 Score: 233
Period size: 68 Copynumber: 2.7 Consensus size: 68
8527302 GCATGTTGGT
* * *
8527312 ATGATGAATGCCATAAGATTATGTATACGATGTAAATTCCATATACCATATAA-GATGATCAAGT
1 ATGATTAATACCATAAGATTATGTATATGATGTAAATTCCATATACCATATAATG-TGATCAAGT
8527376 ATGC
65 ATGC
* * *
8527380 ATGATGT-ATACTATAAGATTGTGTATATGATGTAAATTCCATATACCATATAATGTGATTAAGT
1 ATGAT-TAATACCATAAGATTATGTATATGATGTAAATTCCATATACCATATAATGTGATCAAGT
8527444 ATGC
65 ATGC
* * * * *
8527448 ATGATTAATGCCATGAGAATATGAATATGATGTATATTCCATATAC
1 ATGATTAATACCATAAGATTATGTATATGATGTAAATTCCATATAC
8527494 TGTTGGCTCC
Statistics
Matches: 98, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
67 1 0.01
68 96 0.98
69 1 0.01
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (68 bp):
ATGATTAATACCATAAGATTATGTATATGATGTAAATTCCATATACCATATAATGTGATCAAGTA
TGC
Found at i:8528347 original size:67 final size:67
Alignment explanation
Indices: 8528274--8528458 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 67
8528264 TAGTTGTTGG
* * * * * *
8528274 GTTTTGGTTGATCCCTTGAAAAAGCATTGTTATAGGTTGTGGTTGAGCCTTTAAAAAACCACTTT
1 GTTTTGGTTGAGCCCATGAAAAACCATTGTGAAAAGTTGTGGTTGAGCCTTTAAAAAACCACTTT
8528339 GA
66 GA
* * *
8528341 GTTTTGGTTGAGCTCATGAAAAACCATTGTGAAAAGTTGTGGTTGAGCTTTTGAAAAACCACTTT
1 GTTTTGGTTGAGCCCATGAAAAACCATTGTGAAAAGTTGTGGTTGAGCCTTTAAAAAACCACTTT
*
8528406 GG
66 GA
* * * * * * *
8528408 GTTATAGTTAAGCCCGA-GAAAAACTAGTGT-AAAAGGTTTTGGCTGAGCCTT
1 GTTTTGGTTGAGCCC-ATGAAAAACCATTGTGAAAA-GTTGTGGTTGAGCCTT
8528459 GTCAAAGTCA
Statistics
Matches: 97, Mismatches: 19, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
66 4 0.04
67 92 0.95
68 1 0.01
ACGTcount: A:0.29, C:0.13, G:0.24, T:0.34
Consensus pattern (67 bp):
GTTTTGGTTGAGCCCATGAAAAACCATTGTGAAAAGTTGTGGTTGAGCCTTTAAAAAACCACTTT
GA
Found at i:8528860 original size:65 final size:67
Alignment explanation
Indices: 8528723--8528883 Score: 193
Period size: 65 Copynumber: 2.4 Consensus size: 67
8528713 TTGGGACCAA
** **
8528723 CATATACTACATAAGATGATTAAGTTTGCATGATTAATGCCATGAGAATATGTATATGATGTGTA
1 CATATACTACATAAGATGATTAAGCATGCATGA-TAATGCCATGAGAATATGTATATGATGTAAA
8528788 TTC
65 TTC
* *
8528791 CATATACTACATAAGGTGATTAAGCATGCAT-A-AATGCCATGAGATTATGTATATGATGTAAAT
1 CATATACTACATAAGATGATTAAGCATGCATGATAATGCCATGAGAATATGTATATGATGTAAAT
*
8528854 TT
66 TC
* * *
8528856 CATATATCT-TATGAGATGAGTAAGCATG
1 CATATA-CTACATAAGATGATTAAGCATG
8528884 TATGTGAAGG
Statistics
Matches: 81, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
65 50 0.62
66 2 0.02
67 1 0.01
68 28 0.35
ACGTcount: A:0.37, C:0.11, G:0.18, T:0.35
Consensus pattern (67 bp):
CATATACTACATAAGATGATTAAGCATGCATGATAATGCCATGAGAATATGTATATGATGTAAAT
TC
Found at i:8529069 original size:31 final size:31
Alignment explanation
Indices: 8529001--8529069 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
8528991 ATCATAAAAT
* * * *
8529001 GCCCAAGGTGCAATAGGGATATACGTTGCTA
1 GCCCAAGATGCAATAGGCATATACATTGCCA
* *
8529032 GACCAAGATGCAATAGGCATGTACATTGCCA
1 GCCCAAGATGCAATAGGCATATACATTGCCA
8529063 GCCCAAG
1 GCCCAAG
8529070 GTTGATGAGG
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.23, G:0.26, T:0.19
Consensus pattern (31 bp):
GCCCAAGATGCAATAGGCATATACATTGCCA
Found at i:8543538 original size:2 final size:2
Alignment explanation
Indices: 8543531--8543589 Score: 82
Period size: 2 Copynumber: 29.5 Consensus size: 2
8543521 ATTACTTAAC
* * *
8543531 TA TA TA TA TA TA TA TG TA TG TA TA TA TA TA TA TA TA TA TG TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
8543573 TG TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA T
8543590 GTATGTATCT
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8543544 original size:40 final size:40
Alignment explanation
Indices: 8543471--8543605 Score: 134
Period size: 44 Copynumber: 3.3 Consensus size: 40
8543461 AATAATATAT
8543471 GTATCTATCATTACCTTTAATATATATATATATATGTATG
1 GTATCTATCATTACCTTTAATATATATATATATATGTATG
8543511 NGTATCTATCATTA-C-TTAACTATATATATATATATGTAT-
1 -GTATCTATCATTACCTTTAA-TATATATATATATATGTATG
* * ** *
8543550 GTATATATATATATATATATGTATGTATATATATATATATGTAT-
1 GTATCTAT-CAT-TACCT-T-TA-ATATATATATATATATGTATG
8543594 GTATCTATCATT
1 GTATCTATCATT
8543606 GAGAGCATGG
Statistics
Matches: 80, Mismatches: 6, Indels: 15
0.79 0.06 0.15
Matches are distributed among these distances:
38 7 0.09
39 6 0.08
40 22 0.28
41 13 0.16
42 1 0.01
43 3 0.04
44 28 0.35
ACGTcount: A:0.36, C:0.07, G:0.07, T:0.48
Consensus pattern (40 bp):
GTATCTATCATTACCTTTAATATATATATATATATGTATG
Found at i:8543556 original size:20 final size:20
Alignment explanation
Indices: 8543535--8543597 Score: 108
Period size: 20 Copynumber: 3.1 Consensus size: 20
8543525 CTTAACTATA
* *
8543535 TATATATATATGTATGTATA
1 TATATATATATATATGTATG
8543555 TATATATATATATATGTATG
1 TATATATATATATATGTATG
8543575 TATATATATATATATGTATG
1 TATATATATATATATGTATG
8543595 TAT
1 TAT
8543598 CTATCATTGA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.51
Consensus pattern (20 bp):
TATATATATATATATGTATG
Found at i:8543563 original size:24 final size:24
Alignment explanation
Indices: 8543531--8543597 Score: 125
Period size: 24 Copynumber: 2.8 Consensus size: 24
8543521 ATTACTTAAC
8543531 TATATATATATATATGTATGTATA
1 TATATATATATATATGTATGTATA
8543555 TATATATATATATATGTATGTATA
1 TATATATATATATATGTATGTATA
*
8543579 TATATATATATGTATGTAT
1 TATATATATATATATGTAT
8543598 CTATCATTGA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (24 bp):
TATATATATATATATGTATGTATA
Found at i:8544147 original size:19 final size:19
Alignment explanation
Indices: 8544125--8544164 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
8544115 ATTGTCATGG
*
8544125 ATAATTATAATTATTTTAA
1 ATAATTATAATTATATTAA
*
8544144 ATAATTTTAATTATATTAA
1 ATAATTATAATTATATTAA
8544163 AT
1 AT
8544165 GAATGTACTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
ATAATTATAATTATATTAA
Found at i:8548105 original size:2 final size:2
Alignment explanation
Indices: 8548098--8548236 Score: 160
Period size: 2 Copynumber: 70.5 Consensus size: 2
8548088 ATACATTTTG
*
8548098 TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * * * *
8548140 TA TA TA TA CA NTA TA T- TT TT TGA TA AA TT TA AA AA T- TA TA TA
1 TA TA TA TA TA -TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA
8548182 TA T- TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8548222 TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA T
8548237 TCAAACATTC
Statistics
Matches: 120, Mismatches: 11, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
1 4 0.03
2 114 0.95
3 2 0.02
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8548400 original size:33 final size:35
Alignment explanation
Indices: 8548320--8548410 Score: 114
Period size: 33 Copynumber: 2.6 Consensus size: 35
8548310 TCAAGTCAAC
* * * *
8548320 TCATGTGCACTCCCACACCGCACATAGCTGATATTC
1 TCATGTGCACTCCCACACCACACATAGC-GAAAATA
8548356 TCATGTGCACTCCCACACCACACAT-G-GAAAATA
1 TCATGTGCACTCCCACACCACACATAGCGAAAATA
*
8548389 TCATGTACACTCCCACACCACA
1 TCATGTGCACTCCCACACCACA
8548411 TCATCACCGG
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
33 25 0.50
35 1 0.02
36 24 0.48
ACGTcount: A:0.31, C:0.37, G:0.11, T:0.21
Consensus pattern (35 bp):
TCATGTGCACTCCCACACCACACATAGCGAAAATA
Found at i:8548451 original size:30 final size:31
Alignment explanation
Indices: 8548390--8548452 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
8548380 TGGAAAATAT
*
8548390 CATGTACACTCCCACACCACATCATCACCGG
1 CATGTACACTCCCACACCACATCACCACCGG
*
8548421 CATGTGCACTCCCACACCACA-CACCACCGG
1 CATGTACACTCCCACACCACATCACCACCGG
8548451 CA
1 CA
8548453 CTGTCACGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 10 0.33
31 20 0.67
ACGTcount: A:0.29, C:0.48, G:0.11, T:0.13
Consensus pattern (31 bp):
CATGTACACTCCCACACCACATCACCACCGG
Found at i:8550555 original size:38 final size:40
Alignment explanation
Indices: 8550469--8550571 Score: 138
Period size: 38 Copynumber: 2.6 Consensus size: 40
8550459 ACCCGGCTCA
* *
8550469 TGTACATCCCCCCACATCGTGCGCATAGCTTGCGCCATCG
1 TGTACATCCCCCCACATCGTGCACATAGCTAGCGCCATCG
* * *
8550509 TGTGCATCCCCCCACATCGTGCACA-ATC-AGTGCCATCG
1 TGTACATCCCCCCACATCGTGCACATAGCTAGCGCCATCG
*
8550547 TGTACATCCCCCCACATTGTGCACA
1 TGTACATCCCCCCACATCGTGCACA
8550572 CGAGCACTAT
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
38 31 0.55
39 2 0.04
40 23 0.41
ACGTcount: A:0.20, C:0.40, G:0.17, T:0.22
Consensus pattern (40 bp):
TGTACATCCCCCCACATCGTGCACATAGCTAGCGCCATCG
Found at i:8550697 original size:2 final size:2
Alignment explanation
Indices: 8550690--8550726 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
8550680 TGCACAACAT
8550690 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
8550727 TATATATATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:8550731 original size:2 final size:2
Alignment explanation
Indices: 8550726--8550764 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
8550716 ACACACACAC
8550726 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8550765 NNNNNNNNNN
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8554634 original size:26 final size:26
Alignment explanation
Indices: 8554586--8554639 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 26
8554576 TAGTCTGTTG
* * *
8554586 CTTGATATTTCTTAACCATTATTTGA
1 CTTGATATTTCTTAAACACTATTGGA
* *
8554612 CTTGATATTTGTTAAACGCTATTGGA
1 CTTGATATTTCTTAAACACTATTGGA
8554638 CT
1 CT
8554640 CAACATCTTG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.15, G:0.13, T:0.46
Consensus pattern (26 bp):
CTTGATATTTCTTAAACACTATTGGA
Found at i:8555295 original size:2 final size:2
Alignment explanation
Indices: 8555288--8555336 Score: 71
Period size: 2 Copynumber: 24.5 Consensus size: 2
8555278 GCTTATGTAT
* * *
8555288 TA TA TA TA TA CA AA AA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8555330 TA TA TA T
1 TA TA TA T
8555337 TCCTTTGTGC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (2 bp):
TA
Found at i:8566147 original size:28 final size:29
Alignment explanation
Indices: 8566106--8566165 Score: 68
Period size: 30 Copynumber: 2.1 Consensus size: 29
8566096 GTCTATGGGC
*
8566106 AATTTTTCAATTTT-TGGGGCAAAAATGT
1 AATTTTTCAATTTTAGGGGGCAAAAATGT
* * *
8566134 AATTTTTGACTTTTACGGGGGCAAAAGTGT
1 AATTTTTCAATTTTA-GGGGGCAAAAATGT
8566164 AA
1 AA
8566166 ATTTCAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 12 0.46
30 14 0.54
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.38
Consensus pattern (29 bp):
AATTTTTCAATTTTAGGGGGCAAAAATGT
Found at i:8572172 original size:37 final size:38
Alignment explanation
Indices: 8572131--8572250 Score: 158
Period size: 37 Copynumber: 3.2 Consensus size: 38
8572121 ATGATGTTGT
* *
8572131 GTGATAATGTTGAAGTGTGCGAGTAGGGAGTGCATA-A
1 GTGATGATGTTGAAGTGTGCGAGTAGGGAGTGCACACA
*
8572168 GTGATGATGAT-AGAGTGTGCGAGTAGGGAGTGCACACA
1 GTGATGATGTTGA-AGTGTGCGAGTAGGGAGTGCACACA
*
8572206 -TGATGATGTTGAAGTGTGCGAGGAGGGAGTGCACACA
1 GTGATGATGTTGAAGTGTGCGAGTAGGGAGTGCACACA
*
8572243 -TAATGATG
1 GTGATGATG
8572251 ATATTGCATT
Statistics
Matches: 74, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
36 1 0.01
37 71 0.96
38 2 0.03
ACGTcount: A:0.29, C:0.08, G:0.38, T:0.24
Consensus pattern (38 bp):
GTGATGATGTTGAAGTGTGCGAGTAGGGAGTGCACACA
Found at i:8576982 original size:24 final size:24
Alignment explanation
Indices: 8576954--8577007 Score: 108
Period size: 24 Copynumber: 2.2 Consensus size: 24
8576944 CAGCTTCTAG
8576954 CTTCTTGAATCTCTCTTTGGATTT
1 CTTCTTGAATCTCTCTTTGGATTT
8576978 CTTCTTGAATCTCTCTTTGGATTT
1 CTTCTTGAATCTCTCTTTGGATTT
8577002 CTTCTT
1 CTTCTT
8577008 AATATGTTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.11, C:0.22, G:0.11, T:0.56
Consensus pattern (24 bp):
CTTCTTGAATCTCTCTTTGGATTT
Found at i:8577547 original size:20 final size:20
Alignment explanation
Indices: 8577524--8577566 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
8577514 AAATAATAAC
*
8577524 TAAA-ATAAGATAAATAAACA
1 TAAACATAACATAAA-AAACA
*
8577544 TAAACTTAACATAAAAAACA
1 TAAACATAACATAAAAAACA
8577564 TAA
1 TAA
8577567 CTTAAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.67, C:0.09, G:0.02, T:0.21
Consensus pattern (20 bp):
TAAACATAACATAAAAAACA
Found at i:8577570 original size:19 final size:21
Alignment explanation
Indices: 8577533--8577580 Score: 68
Period size: 19 Copynumber: 2.5 Consensus size: 21
8577523 CTAAAATAAG
8577533 ATAAATAAACATAAACTTAAC
1 ATAAATAAACATAAACTTAAC
8577554 ATAAA-AAACAT-AACTTAA-
1 ATAAATAAACATAAACTTAAC
8577572 A-AAATAAAC
1 ATAAATAAAC
8577581 TAATAAGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
17 3 0.12
18 5 0.19
19 7 0.27
20 6 0.23
21 5 0.19
ACGTcount: A:0.67, C:0.12, G:0.00, T:0.21
Consensus pattern (21 bp):
ATAAATAAACATAAACTTAAC
Found at i:8583181 original size:24 final size:19
Alignment explanation
Indices: 8583136--8583187 Score: 86
Period size: 19 Copynumber: 2.7 Consensus size: 19
8583126 AAAATTTTGG
8583136 AATAAAATAATATTTTATA
1 AATAAAATAATATTTTATA
*
8583155 AATAAAATAATATTTTATT
1 AATAAAATAATATTTTATA
*
8583174 AATAAAATATTATT
1 AATAAAATAATATT
8583188 AAAATATTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
AATAAAATAATATTTTATA
Found at i:8583184 original size:11 final size:11
Alignment explanation
Indices: 8583170--8583199 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
8583160 AATAATATTT
8583170 TATTAATAAAA
1 TATTAATAAAA
*
8583181 TATTATTAAAA
1 TATTAATAAAA
8583192 TATTAATA
1 TATTAATA
8583200 TTTTATTCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (11 bp):
TATTAATAAAA
Found at i:8583205 original size:19 final size:18
Alignment explanation
Indices: 8583142--8583206 Score: 57
Period size: 19 Copynumber: 3.7 Consensus size: 18
8583132 TTGGAATAAA
* *
8583142 ATAATATTTTATAAATAAA
1 ATAATATTTTATTAA-AAT
8583161 ATAATATTTTATT--AAT
1 ATAATATTTTATTAAAAT
*
8583177 A-AA-ATATTATTAAAAT
1 ATAATATTTTATTAAAAT
8583193 ATTAATATTTTATT
1 A-TAATATTTTATT
8583207 CAGTATCGAA
Statistics
Matches: 37, Mismatches: 4, Indels: 10
0.73 0.08 0.20
Matches are distributed among these distances:
14 7 0.19
15 2 0.05
16 7 0.19
18 2 0.05
19 19 0.51
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
ATAATATTTTATTAAAAT
Found at i:8591172 original size:18 final size:19
Alignment explanation
Indices: 8591133--8591179 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
8591123 AAATTAGCAT
*
8591133 AAAATAAAGTAACTTAATA
1 AAAATAAACTAACTTAATA
*
8591152 AAAATAAACTAA-TT-AGA
1 AAAATAAACTAACTTAATA
8591169 AAAAT-AACTAA
1 AAAATAAACTAA
8591180 AAATAACTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
16 6 0.23
17 7 0.27
18 2 0.08
19 11 0.42
ACGTcount: A:0.66, C:0.06, G:0.04, T:0.23
Consensus pattern (19 bp):
AAAATAAACTAACTTAATA
Found at i:8597582 original size:35 final size:35
Alignment explanation
Indices: 8597490--8597593 Score: 154
Period size: 35 Copynumber: 3.0 Consensus size: 35
8597480 TACTCAGCTC
* * ***
8597490 ATGTGCACTCCTTACACGCATAAGGCAATATCATT
1 ATGTGCACTCCCTACACGCACATTTCAATATCATT
*
8597525 ATGTGCATTCCCTACACGCACATTTCAATATCATT
1 ATGTGCACTCCCTACACGCACATTTCAATATCATT
8597560 ATGTGCACTCCCTACACGCACATTTCAATATCAT
1 ATGTGCACTCCCTACACGCACATTTCAATATCAT
8597594 CACACGCACT
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 62 1.00
ACGTcount: A:0.30, C:0.29, G:0.11, T:0.31
Consensus pattern (35 bp):
ATGTGCACTCCCTACACGCACATTTCAATATCATT
Found at i:8597603 original size:35 final size:35
Alignment explanation
Indices: 8597533--8597606 Score: 112
Period size: 35 Copynumber: 2.1 Consensus size: 35
8597523 TTATGTGCAT
* ***
8597533 TCCCTACACGCACATTTCAATATCATTATGTGCAC
1 TCCCTACACGCACATTTCAATATCATCACACGCAC
8597568 TCCCTACACGCACATTTCAATATCATCACACGCAC
1 TCCCTACACGCACATTTCAATATCATCACACGCAC
8597603 TCCC
1 TCCC
8597607 GCCCACATCA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.28, C:0.38, G:0.07, T:0.27
Consensus pattern (35 bp):
TCCCTACACGCACATTTCAATATCATCACACGCAC
Found at i:8598882 original size:19 final size:19
Alignment explanation
Indices: 8598858--8598899 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
8598848 GGTTGTAAGG
8598858 TGAAAATAGCATGGGAGCA
1 TGAAAATAGCATGGGAGCA
*
8598877 TGAAAATGGCATGGGAGCA
1 TGAAAATAGCATGGGAGCA
8598896 TGAA
1 TGAA
8598900 GAAGAAGAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.40, C:0.10, G:0.33, T:0.17
Consensus pattern (19 bp):
TGAAAATAGCATGGGAGCA
Found at i:8599328 original size:16 final size:16
Alignment explanation
Indices: 8599299--8599355 Score: 51
Period size: 17 Copynumber: 3.3 Consensus size: 16
8599289 GACATTGAAT
*
8599299 AAAATATTAATATTTTA
1 AAAATATT-TTATTTTA
*
8599316 AAAATATTTTATTAATA
1 AAAATATTTTATT-TTA
*
8599333 AAATATTATTTTATTTCA
1 AAA-A-TATTTTATTTTA
8599351 AAAAT
1 AAAAT
8599356 TTTCACTTGT
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
16 5 0.15
17 14 0.42
18 5 0.15
19 9 0.27
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (16 bp):
AAAATATTTTATTTTA
Found at i:8602428 original size:24 final size:24
Alignment explanation
Indices: 8602371--8602419 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
8602361 AAATATCATG
**
8602371 AGAATAAGTTTTCAGTACATTATC
1 AGAATAAGTTTTCAACACATTATC
8602395 AGAATAAGTTTTCAACACATTATC
1 AGAATAAGTTTTCAACACATTATC
8602419 A
1 A
8602420 ACATCAGTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.41, C:0.14, G:0.10, T:0.35
Consensus pattern (24 bp):
AGAATAAGTTTTCAACACATTATC
Found at i:8604768 original size:43 final size:43
Alignment explanation
Indices: 8604698--8604832 Score: 157
Period size: 43 Copynumber: 3.1 Consensus size: 43
8604688 GTAATTATGT
* * ** ***
8604698 TGACTCGACTATGTGCGAGTAGGGAGTGTGCATAAGTTGAG-GA
1 TGACCCGATTATGTGCGAGTAGGGAGTGCACATAACCCG-GTGA
8604741 TGACCCGATTATGTGCGAGTAGGGAGTGCACATAACCCGGTGA
1 TGACCCGATTATGTGCGAGTAGGGAGTGCACATAACCCGGTGA
* *
8604784 TGACCCTG-TTATGTGCGAGTAGGGAGTACGCATAACCCGGTGA
1 TGACCC-GATTATGTGCGAGTAGGGAGTGCACATAACCCGGTGA
8604827 TGACCC
1 TGACCC
8604833 AGCCATGTGC
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
42 1 0.01
43 79 0.98
44 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.33, T:0.23
Consensus pattern (43 bp):
TGACCCGATTATGTGCGAGTAGGGAGTGCACATAACCCGGTGA
Found at i:8604872 original size:43 final size:43
Alignment explanation
Indices: 8604751--8604859 Score: 164
Period size: 43 Copynumber: 2.5 Consensus size: 43
8604741 TGACCCGATT
* * * **
8604751 ATGTGCGAGTAGGGAGTGCACATAACCCGGTGATGACCCTGTT
1 ATGTGCGAGTAGGGAGTACGCATAACCCGGTGATGACCCAGCC
8604794 ATGTGCGAGTAGGGAGTACGCATAACCCGGTGATGACCCAGCC
1 ATGTGCGAGTAGGGAGTACGCATAACCCGGTGATGACCCAGCC
*
8604837 ATGTGCGAGTAAGGAGTACGCAT
1 ATGTGCGAGTAGGGAGTACGCAT
8604860 GAGCTGGTGA
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.21, G:0.33, T:0.20
Consensus pattern (43 bp):
ATGTGCGAGTAGGGAGTACGCATAACCCGGTGATGACCCAGCC
Found at i:8604883 original size:20 final size:20
Alignment explanation
Indices: 8604858--8604920 Score: 92
Period size: 20 Copynumber: 3.2 Consensus size: 20
8604848 AGGAGTACGC
8604858 ATGAGCTGGTGATGATGATG
1 ATGAGCTGGTGATGATGATG
*
8604878 ATGAGCTGGTCATGATGATG
1 ATGAGCTGGTGATGATGATG
* *
8604898 ATGGGTTGGTGA-GATGATG
1 ATGAGCTGGTGATGATGATG
8604917 ATGA
1 ATGA
8604921 TGGGTATATA
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
19 10 0.26
20 28 0.74
ACGTcount: A:0.25, C:0.05, G:0.40, T:0.30
Consensus pattern (20 bp):
ATGAGCTGGTGATGATGATG
Found at i:8607656 original size:21 final size:21
Alignment explanation
Indices: 8607632--8607673 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
8607622 TGACAGAATG
8607632 CTCTTAGTTGACTAAGTGCCT
1 CTCTTAGTTGACTAAGTGCCT
8607653 CTCTTAGTTGACTAAGTGCCT
1 CTCTTAGTTGACTAAGTGCCT
8607674 ACTATCTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.38
Consensus pattern (21 bp):
CTCTTAGTTGACTAAGTGCCT
Found at i:8615731 original size:20 final size:21
Alignment explanation
Indices: 8615697--8615739 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
8615687 GGCATAAATG
* *
8615697 TCAAAGTTTCTAGCAAGTTCT
1 TCAAAGTTTCCAGCAACTTCT
8615718 TCAAA-TTTCCAGCAACTTCT
1 TCAAAGTTTCCAGCAACTTCT
8615738 TC
1 TC
8615740 TTCTTCTTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.28, C:0.26, G:0.09, T:0.37
Consensus pattern (21 bp):
TCAAAGTTTCCAGCAACTTCT
Found at i:8626278 original size:75 final size:75
Alignment explanation
Indices: 8626155--8626345 Score: 238
Period size: 75 Copynumber: 2.5 Consensus size: 75
8626145 AACCAACAAC
* * * * ** * ** *
8626155 CCGAGAATTTCTCGCTACAGCGAGAATACATTTTCATTGCAGTGAAAATCTAGAGCAAAGGTTAA
1 CCGAGAGTTTCTCGCTGCAGCAAGAATGCATTTTCGCTACAGCAAAAATCCAGAGCAAAGGTTAA
*
8626220 GGCCATCCAC
66 GGCCATCCAA
* *
8626230 CCGAGAGTTTCTTGCTGCAGCAAGAATGCATTTTTGCTACAGCAAAAATCCAGAGCAAAGGTTAA
1 CCGAGAGTTTCTCGCTGCAGCAAGAATGCATTTTCGCTACAGCAAAAATCCAGAGCAAAGGTTAA
8626295 GGCCATCCAA
66 GGCCATCCAA
* **
8626305 TCGAGAGTTTCTCGCTGCAGTGAGAATGCATTTTCGCTACA
1 CCGAGAGTTTCTCGCTGCAGCAAGAATGCATTTTCGCTACA
8626346 ACGAAAACCT
Statistics
Matches: 98, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
75 98 1.00
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (75 bp):
CCGAGAGTTTCTCGCTGCAGCAAGAATGCATTTTCGCTACAGCAAAAATCCAGAGCAAAGGTTAA
GGCCATCCAA
Found at i:8626403 original size:73 final size:71
Alignment explanation
Indices: 8626306--8626439 Score: 180
Period size: 73 Copynumber: 1.9 Consensus size: 71
8626296 GCCATCCAAT
* * * * *
8626306 CGAGAGTTTCTCGCTGCAGTGAGAATGCATTTTCGCTACAACGAAAA-CCTGGGCTAGTCAAGTC
1 CGAGAGTTTCTCGCTACAGCGAGAATG-AATTTCACTACAAC-AAAACCCAGGGCTA-TCAAGTC
8626370 CCCTGCACC
63 CCCTGCACC
*
8626379 CGAGAGTTTCTCGCTACAGCGAGAATGAATTTCACTGCAACAAAACCCAGGGCTATCAAGT
1 CGAGAGTTTCTCGCTACAGCGAGAATGAATTTCACTACAACAAAACCCAGGGCTATCAAGT
8626440 TAAAGAATTC
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
71 10 0.19
72 19 0.35
73 25 0.46
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.22
Consensus pattern (71 bp):
CGAGAGTTTCTCGCTACAGCGAGAATGAATTTCACTACAACAAAACCCAGGGCTATCAAGTCCCC
TGCACC
Found at i:8626697 original size:35 final size:36
Alignment explanation
Indices: 8626603--8626712 Score: 91
Period size: 36 Copynumber: 3.1 Consensus size: 36
8626593 TCTTATCAGC
* * *
8626603 TCATGTGCACTTCCACACCACACATA-GC-TAGAATCA
1 TCATGTGCACTCCCACACCGCACA-AGGCATA-TATCA
* ** *
8626639 TCCTGTGCACTCCCTTACCGCACAAGGCA-CTATCA
1 TCATGTGCACTCCCACACCGCACAAGGCATATATCA
** *
8626674 TCATGTGCACTCCCACATTGCACATGGCATATATCA
1 TCATGTGCACTCCCACACCGCACAAGGCATATATCA
8626710 TCA
1 TCA
8626713 ATGTCTGAAC
Statistics
Matches: 57, Mismatches: 14, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
35 28 0.49
36 29 0.51
ACGTcount: A:0.28, C:0.35, G:0.13, T:0.25
Consensus pattern (36 bp):
TCATGTGCACTCCCACACCGCACAAGGCATATATCA
Found at i:8627391 original size:5 final size:5
Alignment explanation
Indices: 8627381--8627427 Score: 51
Period size: 5 Copynumber: 9.4 Consensus size: 5
8627371 AGGAAGGAGT
* * *
8627381 AAGAA AAGAA AAGGA AAGAA AAGAA AA-CA AGGAA AAGAA AATGAA AA
1 AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA AA-GAA AA
8627428 TCTTGATTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
4 2 0.06
5 27 0.79
6 5 0.15
ACGTcount: A:0.74, C:0.02, G:0.21, T:0.02
Consensus pattern (5 bp):
AAGAA
Found at i:8627417 original size:14 final size:15
Alignment explanation
Indices: 8627381--8627421 Score: 57
Period size: 14 Copynumber: 2.8 Consensus size: 15
8627371 AGGAAGGAGT
*
8627381 AAGAAAAGAAAAGGA
1 AAGAAAAGAAAAGCA
8627396 AAGAAAAGAAAA-CA
1 AAGAAAAGAAAAGCA
*
8627410 AGGAAAAGAAAA
1 AAGAAAAGAAAA
8627422 TGAAAATCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 12 0.50
15 12 0.50
ACGTcount: A:0.76, C:0.02, G:0.22, T:0.00
Consensus pattern (15 bp):
AAGAAAAGAAAAGCA
Found at i:8627419 original size:19 final size:19
Alignment explanation
Indices: 8627391--8627427 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
8627381 AAGAAAAGAA
8627391 AAGGAAAGAAAA-GAAAAC
1 AAGGAAAGAAAATGAAAAC
8627409 AAGGAAAAGAAAATGAAAA
1 AAGG-AAAGAAAATGAAAA
8627428 TCTTGATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 8 0.47
20 5 0.29
ACGTcount: A:0.73, C:0.03, G:0.22, T:0.03
Consensus pattern (19 bp):
AAGGAAAGAAAATGAAAAC
Found at i:8635012 original size:66 final size:64
Alignment explanation
Indices: 8634929--8635109 Score: 204
Period size: 66 Copynumber: 2.8 Consensus size: 64
8634919 TCTAAATGAC
*
8634929 TTTATAGCGTTTCCACACGTTGTTATGTAGAATTCCACCACATGGTGATGCTGCCAAGTATAATG
1 TTTATAGCGTTTCCACAC-TTGTTATGTAGAATTCCACCACATGGTGATGC-ACCAAGTATAATG
8634994 T
64 T
* * ** *
8634995 TTTATAACGTTTCCACACATTGTGATGTAGAATTCCACCAGGTGGTGATGGCACCTAGTATAATG
1 TTTATAGCGTTTCCACAC-TTGTTATGTAGAATTCCACCACATGGTGAT-GCACCAAGTATAATG
8635060 T
64 T
* * * *
8635061 TTTATAGTGTTTCTATA-TAGCTTAATGTAGAATTCCACC-CATGGTGATG
1 TTTATAGCGTTTCCACACTTG-TT-ATGTAGAATTCCACCACATGGTGATG
8635110 GTGTTGAAAA
Statistics
Matches: 97, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
64 3 0.03
65 8 0.08
66 84 0.87
67 2 0.02
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.36
Consensus pattern (64 bp):
TTTATAGCGTTTCCACACTTGTTATGTAGAATTCCACCACATGGTGATGCACCAAGTATAATGT
Found at i:8635658 original size:20 final size:21
Alignment explanation
Indices: 8635621--8635660 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
8635611 ACTCAACTTT
* *
8635621 ATTTTTTGTATATTTAAAAAA
1 ATTTTTGGTATATATAAAAAA
8635642 ATTTTTGGTA-ATATAAAAA
1 ATTTTTGGTATATATAAAAA
8635661 GCATTTTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.47
Consensus pattern (21 bp):
ATTTTTGGTATATATAAAAAA
Found at i:8647185 original size:26 final size:23
Alignment explanation
Indices: 8647124--8647183 Score: 102
Period size: 23 Copynumber: 2.6 Consensus size: 23
8647114 TATATGTATA
*
8647124 CCCATCATCATCATGCACACCAT
1 CCCATCATCATCATACACACCAT
8647147 CCCATCATCATCATACACACCAT
1 CCCATCATCATCATACACACCAT
*
8647170 CACATCATCATCAT
1 CCCATCATCATCAT
8647184 CACCAGCTCA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.33, C:0.42, G:0.02, T:0.23
Consensus pattern (23 bp):
CCCATCATCATCATACACACCAT
Found at i:8652232 original size:18 final size:18
Alignment explanation
Indices: 8652209--8652243 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8652199 GTTGTTGGGT
*
8652209 GGTTGTGGTGGCGGTGGA
1 GGTTGTGATGGCGGTGGA
*
8652227 GGTTGTGATGGTGGTGG
1 GGTTGTGATGGCGGTGG
8652244 TGCCGCTGGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.06, C:0.03, G:0.60, T:0.31
Consensus pattern (18 bp):
GGTTGTGATGGCGGTGGA
Found at i:8652412 original size:2 final size:2
Alignment explanation
Indices: 8652405--8652485 Score: 89
Period size: 2 Copynumber: 40.5 Consensus size: 2
8652395 GAGTAAATTA
8652405 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG -G AG -G AG TAG TAG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG -AG -AG
*
8652447 -G AG NNG AG TAG AG AG AG AG AG AG AG AG AG AG AG AG -G AG A
1 AG AG -AG AG -AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
8652486 TTGAGGATGA
Statistics
Matches: 70, Mismatches: 2, Indels: 14
0.81 0.02 0.16
Matches are distributed among these distances:
1 4 0.06
2 58 0.83
3 8 0.11
ACGTcount: A:0.44, C:0.00, G:0.49, T:0.04
Consensus pattern (2 bp):
AG
Found at i:8654176 original size:35 final size:34
Alignment explanation
Indices: 8654130--8654201 Score: 126
Period size: 35 Copynumber: 2.1 Consensus size: 34
8654120 AATGTTATGC
*
8654130 GATTAAGTATGCATTAAATGAGAATATATCCCTGT
1 GATTAAGTATGCATTAAATGAAAATATATCCCT-T
8654165 GATTAAGTATGCATTAAATGAAAATATATCCCTT
1 GATTAAGTATGCATTAAATGAAAATATATCCCTT
8654199 GAT
1 GAT
8654202 CAATCTAATT
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
34 4 0.11
35 32 0.89
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.35
Consensus pattern (34 bp):
GATTAAGTATGCATTAAATGAAAATATATCCCTT
Found at i:8658734 original size:21 final size:21
Alignment explanation
Indices: 8658710--8658750 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
8658700 TTTGATTGGT
*
8658710 ATCAGAGCTTTTGGTTTTAAG
1 ATCAGAGCTTTTAGTTTTAAG
*
8658731 ATCAGAGTTTTTAGTTTTAA
1 ATCAGAGCTTTTAGTTTTAA
8658751 AGTTTTTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.07, G:0.20, T:0.46
Consensus pattern (21 bp):
ATCAGAGCTTTTAGTTTTAAG
Found at i:8663080 original size:43 final size:43
Alignment explanation
Indices: 8663010--8663127 Score: 150
Period size: 42 Copynumber: 2.8 Consensus size: 43
8663000 GTAATTATAT
* **
8663010 TGACTCGGCTATGTGCGAGTAGGGAGTGCGCATAAGTCGAG-GA
1 TGACCCGGCTATGTGCGAGTAGGGAGTGCGCATAACCCG-GTGA
* *
8663053 TGACCCGGTTATGTGCGAGTAGGGAGTGTGCA-AACCCGGTGA
1 TGACCCGGCTATGTGCGAGTAGGGAGTGCGCATAACCCGGTGA
* *
8663095 TGACCCAGCCATGTGCGAGTAGGGAGTGCGCAT
1 TGACCCGGCTATGTGCGAGTAGGGAGTGCGCAT
8663128 GAGCTGGTGA
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
41 1 0.02
42 34 0.53
43 29 0.45
ACGTcount: A:0.22, C:0.19, G:0.38, T:0.20
Consensus pattern (43 bp):
TGACCCGGCTATGTGCGAGTAGGGAGTGCGCATAACCCGGTGA
Found at i:8670429 original size:36 final size:35
Alignment explanation
Indices: 8670360--8670431 Score: 101
Period size: 36 Copynumber: 2.0 Consensus size: 35
8670350 CTTATAATAC
* *
8670360 ATATGGAGATTGATGTGTGATTTTGCTCGAAGAGA
1 ATATGGAGATTGAAGTGTGATTTTGCTCAAAGAGA
8670395 ATATGGAGATTGAAGCTGTGATTTTG-TACAAAGAGA
1 ATATGGAGATTGAAG-TGTGATTTTGCT-CAAAGAGA
8670431 A
1 A
8670432 AGGGAAAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
35 15 0.45
36 18 0.55
ACGTcount: A:0.33, C:0.06, G:0.29, T:0.32
Consensus pattern (35 bp):
ATATGGAGATTGAAGTGTGATTTTGCTCAAAGAGA
Found at i:8672588 original size:60 final size:60
Alignment explanation
Indices: 8672435--8672791 Score: 455
Period size: 60 Copynumber: 5.9 Consensus size: 60
8672425 AAACATCATC
* * *
8672435 ACCTACTCGTGGGAACTGCCCACGCCACTATATATAAATTGGGGCTTCAAGTCCCCCTTTT
1 ACCTACTCGTGGGAACTGCCCACGCCACCATATATAAATCGGGGCTTCAGGTCCCCC-TTT
* * * *
8672496 ACCTACTCGTGAGAACTGCCCATGTCACCATATATAAATCGGGGCTTCAGGTCTCCCTTT
1 ACCTACTCGTGGGAACTGCCCACGCCACCATATATAAATCGGGGCTTCAGGTCCCCCTTT
* * ** * *
8672556 ACCTACTCGTGGGAGCTGCCCATGGTATCATATATAAATTGGGGCTTCAGGTCCCCCTTT
1 ACCTACTCGTGGGAACTGCCCACGCCACCATATATAAATCGGGGCTTCAGGTCCCCCTTT
* * * * * *
8672616 ACCTACTCGTGGGAATTACCCACGCAATCATATATAAATCGGGGCTTTAGGTCTCCCTTT
1 ACCTACTCGTGGGAACTGCCCACGCCACCATATATAAATCGGGGCTTCAGGTCCCCCTTT
* * * *
8672676 ACCTACTCGTGGGAACTACCTACGCCACCATATATAAATCGGGGCTTTAGGTCCCCTTTT
1 ACCTACTCGTGGGAACTGCCCACGCCACCATATATAAATCGGGGCTTCAGGTCCCCCTTT
* * *
8672736 TCCTACTCGTGGGAACTACCCACGCCACCCA-ATATAAATCGGAGCTTCAGGTCCCC
1 ACCTACTCGTGGGAACTGCCCACGCCA-CCATATATAAATCGGGGCTTCAGGTCCCC
8672792 ATTTTTAAAT
Statistics
Matches: 262, Mismatches: 33, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
60 209 0.80
61 53 0.20
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.27
Consensus pattern (60 bp):
ACCTACTCGTGGGAACTGCCCACGCCACCATATATAAATCGGGGCTTCAGGTCCCCCTTT
Found at i:8673999 original size:18 final size:18
Alignment explanation
Indices: 8673970--8674012 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 18
8673960 CTCTTCTTTC
8673970 TTCTTCTCTTT-TCTTCTCCT
1 TTCTTCT-TTTAT-TTCT-CT
8673990 TTCTTCTTTTATTTCTCT
1 TTCTTCTTTTATTTCTCT
8674008 TTCTT
1 TTCTT
8674013 TTCTCTTCGG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 7 0.32
19 7 0.32
20 8 0.36
ACGTcount: A:0.02, C:0.28, G:0.00, T:0.70
Consensus pattern (18 bp):
TTCTTCTTTTATTTCTCT
Found at i:8674016 original size:23 final size:22
Alignment explanation
Indices: 8673957--8674013 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 22
8673947 CTTTCCCCTT
*
8673957 TTTCTC-TTCTTTCTTCTTCTC
1 TTTCTCTTTCTTTCTTCTTCTA
*
8673978 TTT-TCTTCTCCTTTCTTCTTTTA
1 TTTCTCTT-T-CTTTCTTCTTCTA
8674001 TTTCTCTTTCTTT
1 TTTCTCTTTCTTT
8674014 TCTCTTCGGC
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
20 2 0.07
21 4 0.13
22 5 0.17
23 15 0.50
24 4 0.13
ACGTcount: A:0.02, C:0.28, G:0.00, T:0.70
Consensus pattern (22 bp):
TTTCTCTTTCTTTCTTCTTCTA
Found at i:8674131 original size:15 final size:15
Alignment explanation
Indices: 8674113--8674146 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
8674103 TCTCTCTTTC
*
8674113 TCTTTTTCCTTTCCT
1 TCTTTTTCCATTCCT
*
8674128 TCTTTTTCCATTCTT
1 TCTTTTTCCATTCCT
8674143 TCTT
1 TCTT
8674147 GTCTTTTCTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.03, C:0.29, G:0.00, T:0.68
Consensus pattern (15 bp):
TCTTTTTCCATTCCT
Found at i:8681447 original size:60 final size:60
Alignment explanation
Indices: 8681160--8681455 Score: 346
Period size: 60 Copynumber: 4.9 Consensus size: 60
8681150 AGACATCATC
* * * * *
8681160 ACCTACTCATGGGAACTACCCACGCCACTATATATAAATCCAGGCTTTAGGACCCCTTTT
1 ACCTACTCGTGGGAACTACCCACGCCACCATATATAAATCGAGGCTTTAGGTCCCCCTTT
* * * *
8681220 ACCTACTCGTGAGAACTGCCCACGCCACCATATATAAATCGATGCTTCAGGTCCCCCTTT
1 ACCTACTCGTGGGAACTACCCACGCCACCATATATAAATCGAGGCTTTAGGTCCCCCTTT
* ** * * *
8681280 ACCTACTCATGGGAACTGTCCACGCGACCATATATAAATTG-GGACTTCAGGTCCCCCTTT
1 ACCTACTCGTGGGAACTACCCACGCCACCATATATAAATCGAGG-CTTTAGGTCCCCCTTT
* * *
8681340 ACCTACTCGTGGGAACTACTCACACCACCATATATAAATCGAGGCTTTAGGTCTCCCTTT
1 ACCTACTCGTGGGAACTACCCACGCCACCATATATAAATCGAGGCTTTAGGTCCCCCTTT
* * * *
8681400 TCTTACTCGTGGGAACTACCCATGCCACCCA-ATATAAATCG-GAGCTTTAAGTCCCC
1 ACCTACTCGTGGGAACTACCCACGCCA-CCATATATAAATCGAG-GCTTTAGGTCCCC
8681456 ATTTTTAAAT
Statistics
Matches: 201, Mismatches: 31, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
59 2 0.01
60 194 0.97
61 5 0.02
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (60 bp):
ACCTACTCGTGGGAACTACCCACGCCACCATATATAAATCGAGGCTTTAGGTCCCCCTTT
Found at i:8683444 original size:17 final size:17
Alignment explanation
Indices: 8683422--8683456 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
8683412 GGAGTTTTTC
8683422 CTCCCCC-TAAGTGTGTG
1 CTCCCCCTTAA-TGTGTG
8683439 CTCCCCCTTAATGTGTG
1 CTCCCCCTTAATGTGTG
8683456 C
1 C
8683457 GTAGTTTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 14 0.82
18 3 0.18
ACGTcount: A:0.11, C:0.37, G:0.20, T:0.31
Consensus pattern (17 bp):
CTCCCCCTTAATGTGTG
Found at i:8691922 original size:28 final size:30
Alignment explanation
Indices: 8691873--8691928 Score: 71
Period size: 28 Copynumber: 1.9 Consensus size: 30
8691863 GACAAGTGTT
* *
8691873 GGGTGGTGTAAAATTACAATTTTGCCCTTG
1 GGGTGGTGTAAAATGACAATTTTACCCTTG
*
8691903 GGGTGG-G-AAAATGACTATTTTACCCT
1 GGGTGGTGTAAAATGACAATTTTACCCT
8691929 ATGCTCGATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 16 0.70
29 1 0.04
30 6 0.26
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.34
Consensus pattern (30 bp):
GGGTGGTGTAAAATGACAATTTTACCCTTG
Found at i:8693104 original size:15 final size:12
Alignment explanation
Indices: 8693071--8693095 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8693061 CAAACACAAG
8693071 TTAGCTTTTTCT
1 TTAGCTTTTTCT
8693083 TTAGCTTTTTCT
1 TTAGCTTTTTCT
8693095 T
1 T
8693096 CCTTAGCTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.08, T:0.68
Consensus pattern (12 bp):
TTAGCTTTTTCT
Found at i:8695078 original size:43 final size:43
Alignment explanation
Indices: 8695029--8695135 Score: 142
Period size: 43 Copynumber: 2.5 Consensus size: 43
8695019 ATTGACTCGG
* *
8695029 CTATGTGCGAGTAGGGAGTGCGCATAAGCCGATGATAACCCAG
1 CTATGTGCGAGTAGGGAGTGCGCATAACCCGATGATAACCCAA
* * * *
8695072 TTATGTGCAAGTAGGGAGTGCGCATAACCCGGTGATGACCCAA
1 CTATGTGCGAGTAGGGAGTGCGCATAACCCGATGATAACCCAA
* *
8695115 CCATGTGCGAGTAAGGAGTGC
1 CTATGTGCGAGTAGGGAGTGC
8695136 ACATGAGATG
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 54 1.00
ACGTcount: A:0.27, C:0.21, G:0.33, T:0.20
Consensus pattern (43 bp):
CTATGTGCGAGTAGGGAGTGCGCATAACCCGATGATAACCCAA
Found at i:8697053 original size:35 final size:34
Alignment explanation
Indices: 8697010--8697079 Score: 86
Period size: 35 Copynumber: 2.0 Consensus size: 34
8697000 TTTCACCAAG
* *
8697010 CTTTACAATGGCTTTTACCAGGCTCAACCAAAAC
1 CTTTACAATAGCTTTTACCAGGATCAACCAAAAC
* * *
8697044 CTTTCACAATAGTTTTTACCGGGATCAACTAAAAC
1 CTTT-ACAATAGCTTTTACCAGGATCAACCAAAAC
8697079 C
1 C
8697080 CAACACCTAA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
34 4 0.13
35 26 0.87
ACGTcount: A:0.33, C:0.27, G:0.11, T:0.29
Consensus pattern (34 bp):
CTTTACAATAGCTTTTACCAGGATCAACCAAAAC
Found at i:8700315 original size:77 final size:75
Alignment explanation
Indices: 8700144--8700320 Score: 203
Period size: 74 Copynumber: 2.3 Consensus size: 75
8700134 TAACTGTGCG
* * * *
8700144 TGTGTGGTGTGGGAGAGCACATGACGGTGATGGTAGTGTGCAGTGTGGGAGAGCACACGATGATG
1 TGTGTGGTGTGGGAGTGCACATGATGGGGATGGTAGTGTACAGTGTGGGAGAGCACACGATGATG
8700209 ACATTTCCCA
66 ACATTTCCCA
*** * * * *
8700219 TGTACAGTGTAGGAGTGCACATGATGGGGAT-GTGGTGTACGGTGTGGGAGTGCACACGATGATG
1 TGTGTGGTGTGGGAGTGCACATGATGGGGATGGTAGTGTACAGTGTGGGAGAGCACACGATGATG
* *
8700283 ATGATATATGCCA
66 A-CAT-T-TCCCA
8700296 TGTGTGGTGTGGGAGTGCACATGAT
1 TGTGTGGTGTGGGAGTGCACATGAT
8700321 ATATGCCATG
Statistics
Matches: 82, Mismatches: 17, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
74 30 0.37
75 26 0.32
76 1 0.01
77 25 0.30
ACGTcount: A:0.23, C:0.12, G:0.39, T:0.26
Consensus pattern (75 bp):
TGTGTGGTGTGGGAGTGCACATGATGGGGATGGTAGTGTACAGTGTGGGAGAGCACACGATGATG
ACATTTCCCA
Found at i:8700321 original size:33 final size:33
Alignment explanation
Indices: 8700283--8700421 Score: 170
Period size: 33 Copynumber: 4.1 Consensus size: 33
8700273 CACGATGATG
8700283 ATGATATATGCCATGTGTGGTGTGGGAGTGCAC
1 ATGATATATGCCATGTGTGGTGTGGGAGTGCAC
* * *
8700316 ATGATATATGCCATGTGAGGCGTGGGAGTGGAC
1 ATGATATATGCCATGTGTGGTGTGGGAGTGCAC
* * **
8700349 GTGATATTTGCCATGTGCAGTGTGGGAGTGCAC
1 ATGATATATGCCATGTGTGGTGTGGGAGTGCAC
* *
8700382 ATGAGGATATTAGCTATGTGTGGTGTGGGAGTGCAC
1 ATGA-TATA-T-GCCATGTGTGGTGTGGGAGTGCAC
8700418 ATGA
1 ATGA
8700422 GCTGAGTTGA
Statistics
Matches: 88, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
33 60 0.68
34 2 0.02
35 1 0.01
36 25 0.28
ACGTcount: A:0.22, C:0.12, G:0.37, T:0.29
Consensus pattern (33 bp):
ATGATATATGCCATGTGTGGTGTGGGAGTGCAC
Found at i:8700401 original size:36 final size:36
Alignment explanation
Indices: 8700260--8700422 Score: 115
Period size: 33 Copynumber: 4.5 Consensus size: 36
8700250 GTGGTGTACG
* **
8700260 GTGTGGGAGTGCACACGATGATGATGATATATGCCATGTGTG
1 GTGTGGGAGTG--CAC-ATGAGGAT-AT-TA-GCCATGTGCA
*
8700302 GTGTGGGAGTGCACATGA-TATA-T-GCCATGTG-A
1 GTGTGGGAGTGCACATGAGGATATTAGCCATGTGCA
* * * *
8700334 GGCGTGGGAGTGGAC--G-TGATATTTGCCATGTGCA
1 -GTGTGGGAGTGCACATGAGGATATTAGCCATGTGCA
* **
8700368 GTGTGGGAGTGCACATGAGGATATTAGCTATGTGTG
1 GTGTGGGAGTGCACATGAGGATATTAGCCATGTGCA
8700404 GTGTGGGAGTGCACATGAG
1 GTGTGGGAGTGCACATGAG
8700423 CTGAGTTGAG
Statistics
Matches: 101, Mismatches: 12, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
31 4 0.04
32 1 0.01
33 40 0.40
34 1 0.01
35 2 0.02
36 32 0.32
37 1 0.01
38 2 0.02
39 4 0.04
40 3 0.03
42 11 0.11
ACGTcount: A:0.22, C:0.12, G:0.39, T:0.28
Consensus pattern (36 bp):
GTGTGGGAGTGCACATGAGGATATTAGCCATGTGCA
Found at i:8706695 original size:42 final size:41
Alignment explanation
Indices: 8706648--8706772 Score: 178
Period size: 42 Copynumber: 3.0 Consensus size: 41
8706638 CATCTCATAT
* *
8706648 GCAACGGCTTATGCGCACTCCCACTTGCACATAGTCGGGTCA
1 GCAACGGCTTATGTGCACTCCCACTCGCACATAG-CGGGTCA
*
8706690 GCAACGACTTATGTGCACTCCCACTCGCACATAGCTGGGTCA
1 GCAACGGCTTATGTGCACTCCCACTCGCACATAGC-GGGTCA
* *
8706732 GTAATGGCTTATGTGCACTCCCACTCGCACATAGCCGGGTC
1 GCAACGGCTTATGTGCACTCCCACTCGCACATAG-CGGGTC
8706773 CACATCAACA
Statistics
Matches: 75, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
41 1 0.01
42 73 0.97
43 1 0.01
ACGTcount: A:0.22, C:0.33, G:0.23, T:0.22
Consensus pattern (41 bp):
GCAACGGCTTATGTGCACTCCCACTCGCACATAGCGGGTCA
Found at i:8708250 original size:11 final size:11
Alignment explanation
Indices: 8708236--8708265 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
8708226 ATTAATATTT
8708236 TATTAATAAAA
1 TATTAATAAAA
*
8708247 TATTATTAAAA
1 TATTAATAAAA
8708258 TATTAATA
1 TATTAATA
8708266 TCTTATCTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (11 bp):
TATTAATAAAA
Found at i:8710616 original size:17 final size:16
Alignment explanation
Indices: 8710574--8710607 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
8710564 GAACTTGAAA
*
8710574 TTAGTTGCACACTAAT
1 TTAGTTGCATACTAAT
8710590 TTAGTTGCATACTAAT
1 TTAGTTGCATACTAAT
8710606 TT
1 TT
8710608 TAGATGCATC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.29, C:0.15, G:0.12, T:0.44
Consensus pattern (16 bp):
TTAGTTGCATACTAAT
Found at i:8715950 original size:21 final size:20
Alignment explanation
Indices: 8715910--8715964 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 20
8715900 TAGTTTATGG
*
8715910 AATTGAATTAGTTAATTTAA
1 AATTGAATTAATTAATTTAA
*
8715930 AATTGAATATAATTCATTT-A
1 AATTGAAT-TAATTAATTTAA
8715950 AATT-AATTAATTAAT
1 AATTGAATTAATTAAT
8715965 AAAATTATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
18 7 0.23
19 3 0.10
20 13 0.42
21 8 0.26
ACGTcount: A:0.47, C:0.02, G:0.05, T:0.45
Consensus pattern (20 bp):
AATTGAATTAATTAATTTAA
Found at i:8717763 original size:91 final size:91
Alignment explanation
Indices: 8717608--8717821 Score: 333
Period size: 91 Copynumber: 2.4 Consensus size: 91
8717598 ATCTACCAAT
* * **
8717608 AGCCATTACAATGCTTGAAATGAGGACATTTCTTTCCTAAAGGGTCTTTCCCTTTAAAGACTTAA
1 AGCCATTACAATGTTTGAAATGAGGGCATTTCTTTCCTAAAGGGTCTTTCCCCCTAAAGACTTAA
*
8717673 CAAGTATTTCTAGAGATGTCACCATG
66 CAAGTATTTCTAGAGATGTCACCACG
*
8717699 AGCCATTACAATGTTTGAAATGAGGGCA-TTCTTTTCCTAAATGGTCTTTCCCCCTAAAGACTTA
1 AGCCATTACAATGTTTGAAATGAGGGCATTTC-TTTCCTAAAGGGTCTTTCCCCCTAAAGACTTA
*
8717763 ACAAGTATTTCTAGCGATGTCACCACG
65 ACAAGTATTTCTAGAGATGTCACCACG
8717790 AGCCATTACAATGTTTGAAATG-GGGACATTTC
1 AGCCATTACAATGTTTGAAATGAGGG-CATTTC
8717822 CCTTACAAGT
Statistics
Matches: 113, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
90 6 0.05
91 104 0.92
92 3 0.03
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (91 bp):
AGCCATTACAATGTTTGAAATGAGGGCATTTCTTTCCTAAAGGGTCTTTCCCCCTAAAGACTTAA
CAAGTATTTCTAGAGATGTCACCACG
Found at i:8721945 original size:36 final size:36
Alignment explanation
Indices: 8721900--8721993 Score: 134
Period size: 36 Copynumber: 2.6 Consensus size: 36
8721890 GAATGATGAT
*
8721900 ATTACTTGTGCGCGATGTGGGGGAGCACACAATGGC
1 ATTAGTTGTGCGCGATGTGGGGGAGCACACAATGGC
* * *
8721936 ATTAGTTGTGCGCAATGTGGGGGAGCACACGATGGT
1 ATTAGTTGTGCGCGATGTGGGGGAGCACACAATGGC
* *
8721972 ATTAGCTGTACGCGATGTGGGG
1 ATTAGTTGTGCGCGATGTGGGG
8721994 TTGCACACGA
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 51 1.00
ACGTcount: A:0.21, C:0.16, G:0.38, T:0.24
Consensus pattern (36 bp):
ATTAGTTGTGCGCGATGTGGGGGAGCACACAATGGC
Found at i:8722000 original size:36 final size:36
Alignment explanation
Indices: 8721910--8722005 Score: 129
Period size: 36 Copynumber: 2.7 Consensus size: 36
8721900 ATTACTTGTG
* * *
8721910 CGCGATGTGGGGGAGCACACAATGGCATTAGTTGTG
1 CGCGATGTGGGGGAGCACACGATGGCATTAGCTGTA
* *
8721946 CGCAATGTGGGGGAGCACACGATGGTATTAGCTGTA
1 CGCGATGTGGGGGAGCACACGATGGCATTAGCTGTA
**
8721982 CGCGATGTGGGGTTGCACACGATG
1 CGCGATGTGGGGGAGCACACGATG
8722006 ACTCCGGCTA
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 52 1.00
ACGTcount: A:0.22, C:0.18, G:0.39, T:0.22
Consensus pattern (36 bp):
CGCGATGTGGGGGAGCACACGATGGCATTAGCTGTA
Found at i:8727367 original size:12 final size:12
Alignment explanation
Indices: 8727352--8727376 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8727342 TATATATATA
8727352 TATGTGTGTGTG
1 TATGTGTGTGTG
8727364 TATGTGTGTGTG
1 TATGTGTGTGTG
8727376 T
1 T
8727377 GTATACGAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.00, G:0.40, T:0.52
Consensus pattern (12 bp):
TATGTGTGTGTG
Found at i:8727371 original size:14 final size:14
Alignment explanation
Indices: 8727354--8727380 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8727344 TATATATATA
8727354 TGTGTGTGTGTATG
1 TGTGTGTGTGTATG
8727368 TGTGTGTGTGTAT
1 TGTGTGTGTGTAT
8727381 ACGAATAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.00, G:0.41, T:0.52
Consensus pattern (14 bp):
TGTGTGTGTGTATG
Found at i:8727473 original size:42 final size:42
Alignment explanation
Indices: 8727405--8727588 Score: 251
Period size: 42 Copynumber: 4.4 Consensus size: 42
8727395 GTAATGATAT
* * *
8727405 TGACCCTGCTATGTGCGAGTAAGAGTGTGCATAAGCCGATGC
1 TGACCCAGCTATGTGCAAGTAAGAGTGCGCATAAGCCGATGC
* *** *
8727447 TGACCTAGCTATGTGCAAGGGGGAGTGTGCATAAGCCGATGC
1 TGACCCAGCTATGTGCAAGTAAGAGTGCGCATAAGCCGATGC
* *
8727489 TGACCCGGCTATGTGCGAGTAAGAGTGCGCATAAGCCGATGC
1 TGACCCAGCTATGTGCAAGTAAGAGTGCGCATAAGCCGATGC
* *
8727531 TGACCCGGCTATGTGCAAGTAAGAGTGCGCATAAGCCGATGT
1 TGACCCAGCTATGTGCAAGTAAGAGTGCGCATAAGCCGATGC
*
8727573 TGACCCAGCCATGTGC
1 TGACCCAGCTATGTGC
8727589 TAGTGGGAGT
Statistics
Matches: 125, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 125 1.00
ACGTcount: A:0.24, C:0.23, G:0.32, T:0.21
Consensus pattern (42 bp):
TGACCCAGCTATGTGCAAGTAAGAGTGCGCATAAGCCGATGC
Found at i:8728868 original size:42 final size:42
Alignment explanation
Indices: 8728814--8729022 Score: 170
Period size: 42 Copynumber: 5.0 Consensus size: 42
8728804 CATCTTATAT
* * *
8728814 GCAACGGCTTATGCATACTCCCACCCGCATATAGTCGGGTCA
1 GCAACTGCTTATGCACACTCCCACCCGCACATAGTCGGGTCA
** *
8728856 GCAA-TGACTTATGTGCACTCCCACTCGCACATAGTCGGGTCA
1 GCAACTG-CTTATGCACACTCCCACCCGCACATAGTCGGGTCA
** ** * *
8728898 GCAACTGCTTATGTGCACTCTTACTCGCACATAGCCGGGTCA
1 GCAACTGCTTATGCACACTCCCACCCGCACATAGTCGGGTCA
* ** * ** * *
8728940 GCAACGGCTTATGTGCACTCCTATTCGCACATAGCCGGGCCA
1 GCAACTGCTTATGCACACTCCCACCCGCACATAGTCGGGTCA
* * * *
8728982 GCAA-TGACTTATGTACACTCCTACTCACACATAGTCGGGTC
1 GCAACTG-CTTATGCACACTCCCACCCGCACATAGTCGGGTC
8729023 CACATCAACA
Statistics
Matches: 145, Mismatches: 19, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
41 2 0.01
42 141 0.97
43 2 0.01
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.24
Consensus pattern (42 bp):
GCAACTGCTTATGCACACTCCCACCCGCACATAGTCGGGTCA
Found at i:8728908 original size:84 final size:84
Alignment explanation
Indices: 8728814--8729022 Score: 258
Period size: 84 Copynumber: 2.5 Consensus size: 84
8728804 CATCTTATAT
* * * * * * *
8728814 GCAACGGCTTATGCATACTCCCACCCGCATATAGTCGGGTCAGCAATGACTTATGTGCACTCCCA
1 GCAACTGCTTATGTACACTCCTACTCGCACATAGTCGGGTCAGCAACGACTTATGTGCACTCCCA
* *
8728879 CTCGCACATAGTCGGGTCA
66 CTCGCACATAGCCGGGCCA
* * * * *
8728898 GCAACTGCTTATGTGCACTCTTACTCGCACATAGCCGGGTCAGCAACGGCTTATGTGCACTCCTA
1 GCAACTGCTTATGTACACTCCTACTCGCACATAGTCGGGTCAGCAACGACTTATGTGCACTCCCA
*
8728963 TTCGCACATAGCCGGGCCA
66 CTCGCACATAGCCGGGCCA
*
8728982 GCAA-TGACTTATGTACACTCCTACTCACACATAGTCGGGTC
1 GCAACTG-CTTATGTACACTCCTACTCGCACATAGTCGGGTC
8729023 CACATCAACA
Statistics
Matches: 105, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
83 2 0.02
84 103 0.98
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.24
Consensus pattern (84 bp):
GCAACTGCTTATGTACACTCCTACTCGCACATAGTCGGGTCAGCAACGACTTATGTGCACTCCCA
CTCGCACATAGCCGGGCCA
Found at i:8733693 original size:42 final size:42
Alignment explanation
Indices: 8733561--8733693 Score: 176
Period size: 42 Copynumber: 3.2 Consensus size: 42
8733551 CATCTCATAT
* * * * *
8733561 GCAATGGCTTATGCGTACTCCCACTCGCATATAGCCGGGTCA
1 GCAACGGCTTATGTGCACTCCCACTCGCACATAGCTGGGTCA
* *
8733603 GCAACGACTTATGTGCACTCCCACTCGCACATAGTTGGGTCA
1 GCAACGGCTTATGTGCACTCCCACTCGCACATAGCTGGGTCA
* * *
8733645 GTAACGGCTTATGTGCACTCACACTCACACATAGCTGGGTCA
1 GCAACGGCTTATGTGCACTCCCACTCGCACATAGCTGGGTCA
8733687 GCAACGG
1 GCAACGG
8733694 TGTGAGACCT
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 78 1.00
ACGTcount: A:0.24, C:0.30, G:0.23, T:0.23
Consensus pattern (42 bp):
GCAACGGCTTATGTGCACTCCCACTCGCACATAGCTGGGTCA
Found at i:8739427 original size:21 final size:21
Alignment explanation
Indices: 8739403--8739447 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
8739393 ACGAGGGCTC
*
8739403 CTCTCAACTGCACAAGGGTTT
1 CTCTCAACTACACAAGGGTTT
* *
8739424 CTCTCAACTACACGATGGTTT
1 CTCTCAACTACACAAGGGTTT
8739445 CTC
1 CTC
8739448 ATTAAAACCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.22, C:0.31, G:0.16, T:0.31
Consensus pattern (21 bp):
CTCTCAACTACACAAGGGTTT
Found at i:8759949 original size:36 final size:36
Alignment explanation
Indices: 8759854--8759954 Score: 139
Period size: 36 Copynumber: 2.8 Consensus size: 36
8759844 ATGATATTGC
* * *
8759854 CTGTGCGCGATGTGGGGGACCACACAATGGCATTAG
1 CTGTGCGCGATGTGGGGGAGCACACGATGGTATTAG
* *
8759890 CTGTGTGCGATGTGGGGGAGCACATGATGGTATTAG
1 CTGTGCGCGATGTGGGGGAGCACACGATGGTATTAG
* *
8759926 CTGTGCGCAATGTGGGGGTGCACACGATG
1 CTGTGCGCGATGTGGGGGAGCACACGATG
8759955 ACTCCGGCTA
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 56 1.00
ACGTcount: A:0.20, C:0.18, G:0.40, T:0.23
Consensus pattern (36 bp):
CTGTGCGCGATGTGGGGGAGCACACGATGGTATTAG
Found at i:8761394 original size:19 final size:19
Alignment explanation
Indices: 8761370--8761410 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
8761360 CAGCTAGCCG
*
8761370 AGGGTTTCTTAACTGGCTA
1 AGGGTTTCTTAACTGGCCA
8761389 AGGGTTTCTTAACTGGCCA
1 AGGGTTTCTTAACTGGCCA
8761408 AGG
1 AGG
8761411 CTCACCAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (19 bp):
AGGGTTTCTTAACTGGCCA
Found at i:8761871 original size:2 final size:2
Alignment explanation
Indices: 8761859--8761888 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
8761849 ACCATATACC
*
8761859 AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8761889 CAATCATCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8761976 original size:42 final size:42
Alignment explanation
Indices: 8761929--8762047 Score: 159
Period size: 42 Copynumber: 2.8 Consensus size: 42
8761919 CAACTCATAT
* * *
8761929 GCATCGGCTTATGTGCACTCCCACTAGCACATAGCTGGGTTA
1 GCATCGGCTTATGCGCACTCCTACTAGCACATAGCTGGGTCA
* *
8761971 GCATCGGCTTATGCGCACTCCTACTTGCACATAGTTGGGTCA
1 GCATCGGCTTATGCGCACTCCTACTAGCACATAGCTGGGTCA
* *
8762013 GCATCAGCTTATGCACACTCCTACTCA-CACATAGC
1 GCATCGGCTTATGCGCACTCCTACT-AGCACATAGC
8762048 CAAGTCAATA
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
42 67 1.00
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (42 bp):
GCATCGGCTTATGCGCACTCCTACTAGCACATAGCTGGGTCA
Found at i:8764871 original size:2 final size:2
Alignment explanation
Indices: 8764864--8764893 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
8764854 GATGATTGAC
*
8764864 AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8764894 TGTATATGGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:8771867 original size:2 final size:2
Alignment explanation
Indices: 8771860--8771899 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
8771850 CATTATGTTG
8771860 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8771900 GAATAATGTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8771987 original size:42 final size:42
Alignment explanation
Indices: 8771924--8772047 Score: 140
Period size: 42 Copynumber: 3.0 Consensus size: 42
8771914 AATGATATTG
* * * * *
8771924 ACCCGACTATGTGCGAATGGGAGTGTGCATAAGCCATTGCTG
1 ACCCGGCTATGTGAGAGTGGGAGTGCGCATAAGCCATTGCTA
* * *
8771966 ACCTGGCTATGTGAGAGTGGGAGTACGCATAAGCCGTTGCTA
1 ACCCGGCTATGTGAGAGTGGGAGTGCGCATAAGCCATTGCTA
* * * *
8772008 ACCCGGCTATGTGTGTGTAGGAGTGCACATAAGCCATTGC
1 ACCCGGCTATGTGAGAGTGGGAGTGCGCATAAGCCATTGC
8772048 ATATGAGTTG
Statistics
Matches: 67, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 67 1.00
ACGTcount: A:0.23, C:0.21, G:0.31, T:0.24
Consensus pattern (42 bp):
ACCCGGCTATGTGAGAGTGGGAGTGCGCATAAGCCATTGCTA
Found at i:8776687 original size:21 final size:20
Alignment explanation
Indices: 8776663--8776710 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 20
8776653 TCTTACCTTT
*
8776663 TTTTTCACTTGTTTCCTTGAA
1 TTTTTCACTT-TTCCCTTGAA
*
8776684 TTTTCACACTTTTCCCTTGAA
1 TTTT-TCACTTTTCCCTTGAA
8776705 TTTTTC
1 TTTTTC
8776711 CACCTAGGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 17 0.74
22 5 0.22
ACGTcount: A:0.15, C:0.23, G:0.06, T:0.56
Consensus pattern (20 bp):
TTTTTCACTTTTCCCTTGAA
Found at i:8776710 original size:22 final size:22
Alignment explanation
Indices: 8776668--8776708 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
8776658 CCTTTTTTTT
*
8776668 CACTTGTTTCCTTGAATTTTCA
1 CACTTGTTCCCTTGAATTTTCA
8776690 CACTT-TTCCCTTGAATTTT
1 CACTTGTTCCCTTGAATTTT
8776709 TCCACCTAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.17, C:0.24, G:0.07, T:0.51
Consensus pattern (22 bp):
CACTTGTTCCCTTGAATTTTCA
Found at i:8782570 original size:20 final size:18
Alignment explanation
Indices: 8782545--8782583 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
8782535 CGCGATTTCC
8782545 CCTTTGAATTTTCTCGTTTT
1 CCTTTG-ATTTTCTC-TTTT
*
8782565 CCTTTGTTTTTCTCTTTT
1 CCTTTGATTTTCTCTTTT
8782583 C
1 C
8782584 TTCCTTTCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 7 0.39
20 6 0.33
ACGTcount: A:0.05, C:0.23, G:0.08, T:0.64
Consensus pattern (18 bp):
CCTTTGATTTTCTCTTTT
Found at i:8790643 original size:28 final size:29
Alignment explanation
Indices: 8790585--8790644 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 29
8790575 TTTTTGAAAT
** *
8790585 TTACATTTTTGCCCCCGTAAAAGTGAAAAA
1 TTACATTTTTG-CCCCAAAAAACTGAAAAA
8790615 TTACATTTTTG-CCCAAAAAACTGAAAAA
1 TTACATTTTTGCCCCAAAAAACTGAAAAA
8790643 TT
1 TT
8790645 GCCCATAGAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 16 0.59
30 11 0.41
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (29 bp):
TTACATTTTTGCCCCAAAAAACTGAAAAA
Found at i:8796480 original size:14 final size:15
Alignment explanation
Indices: 8796461--8796499 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
8796451 AATATTTTCA
*
8796461 TTTTCTTTTCCTT-G
1 TTTTCTTTTCCTTCC
*
8796475 TTTTCTTTTCTTTCC
1 TTTTCTTTTCCTTCC
8796490 TTTTCTTTTC
1 TTTTCTTTTC
8796500 TTACTCATTC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 12 0.55
15 10 0.45
ACGTcount: A:0.00, C:0.23, G:0.03, T:0.74
Consensus pattern (15 bp):
TTTTCTTTTCCTTCC
Found at i:8796483 original size:5 final size:5
Alignment explanation
Indices: 8796455--8796501 Score: 51
Period size: 5 Copynumber: 9.4 Consensus size: 5
8796445 AAAATCAATA
* * *
8796455 TTTTC ATTTTC TTTTC -CTTG TTTTC TTTTC TTTCC TTTTC TTTTC TT
1 TTTTC -TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TT
8796502 ACTCATTCCT
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
4 2 0.06
5 27 0.79
6 5 0.15
ACGTcount: A:0.02, C:0.21, G:0.02, T:0.74
Consensus pattern (5 bp):
TTTTC
Found at i:8796485 original size:19 final size:19
Alignment explanation
Indices: 8796455--8796491 Score: 58
Period size: 18 Copynumber: 1.9 Consensus size: 19
8796445 AAAATCAATA
8796455 TTTTCATTTTCTTTTCCTTG
1 TTTTCATTTTC-TTTCCTTG
8796475 TTTTC-TTTTCTTTCCTT
1 TTTTCATTTTCTTTCCTT
8796492 TTCTTTTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
19 5 0.29
20 5 0.29
ACGTcount: A:0.03, C:0.22, G:0.03, T:0.73
Consensus pattern (19 bp):
TTTTCATTTTCTTTCCTTG
Found at i:8797409 original size:36 final size:36
Alignment explanation
Indices: 8797362--8797449 Score: 124
Period size: 36 Copynumber: 2.5 Consensus size: 36
8797352 GTGCACGATG
* **
8797362 TGGGGCTGCACACGATGGCATTAGCTATGCGTGATA
1 TGGGGGTGCACACGATGGCATTAGCTATGCGCAATA
* *
8797398 TGGGGGTGCACACGATGGCATTAGCTGTGTGCAATA
1 TGGGGGTGCACACGATGGCATTAGCTATGCGCAATA
8797434 TGGGGGTGCACA-GATG
1 TGGGGGTGCACACGATG
8797450 ACTTTGGCTA
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
35 4 0.09
36 43 0.91
ACGTcount: A:0.22, C:0.17, G:0.38, T:0.24
Consensus pattern (36 bp):
TGGGGGTGCACACGATGGCATTAGCTATGCGCAATA
Found at i:8817475 original size:43 final size:43
Alignment explanation
Indices: 8817415--8817593 Score: 209
Period size: 43 Copynumber: 4.2 Consensus size: 43
8817405 TTGTGTGATG
* * **
8817415 ATGATGACCC-AGGTATGTGCGATGT-GGGAGTGCACATGAGCTG
1 ATGATGACCCGA-CTATGTGCGA-GTAGGGAGTGCACATAAGCCA
*
8817458 ATGATGACCCGACTATGTGCGAGTAGGGAGTGCGCATAAGCCA
1 ATGATGACCCGACTATGTGCGAGTAGGGAGTGCACATAAGCCA
* * *
8817501 ATGATTACTCGGCTATGTGCGAGTAGGGAGTGCACATAAGCCA
1 ATGATGACCCGACTATGTGCGAGTAGGGAGTGCACATAAGCCA
* * * * *
8817544 ATGATGTCCCGACTATGTGCGAGTAAGGAGTACGCATAAGCCG
1 ATGATGACCCGACTATGTGCGAGTAGGGAGTGCACATAAGCCA
8817587 ATGATGA
1 ATGATGA
8817594 TGACCCGGCT
Statistics
Matches: 116, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
42 2 0.02
43 113 0.97
44 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.32, T:0.22
Consensus pattern (43 bp):
ATGATGACCCGACTATGTGCGAGTAGGGAGTGCACATAAGCCA
Found at i:8817560 original size:86 final size:86
Alignment explanation
Indices: 8817428--8817591 Score: 249
Period size: 86 Copynumber: 1.9 Consensus size: 86
8817418 ATGACCCAGG
* ** * *
8817428 TATGTGCGATGTGGGAGTGCACATGAGCTGATGATGACCCGACTATGTGCGAGTAGGGAGTGCGC
1 TATGTGCGATGTGGGAGTGCACATAAGCCAATGATGACCCGACTATGTGCGAGTAAGGAGTACGC
8817493 ATAAGCCAATGATTACTCGGC
66 ATAAGCCAATGATTACTCGGC
*
8817514 TATGTGCGA-GTAGGGAGTGCACATAAGCCAATGATGTCCCGACTATGTGCGAGTAAGGAGTACG
1 TATGTGCGATGT-GGGAGTGCACATAAGCCAATGATGACCCGACTATGTGCGAGTAAGGAGTACG
*
8817578 CATAAGCCGATGAT
65 CATAAGCCAATGAT
8817592 GATGACCCGG
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
85 2 0.03
86 68 0.97
ACGTcount: A:0.27, C:0.18, G:0.32, T:0.23
Consensus pattern (86 bp):
TATGTGCGATGTGGGAGTGCACATAAGCCAATGATGACCCGACTATGTGCGAGTAAGGAGTACGC
ATAAGCCAATGATTACTCGGC
Done.