Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39371879
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2227820 characters in sequence are not A, C, G, or T
File 24 of 103
Found at i:8822518 original size:16 final size:13
Alignment explanation
Indices: 8822489--8822537 Score: 62
Period size: 13 Copynumber: 3.5 Consensus size: 13
8822479 ATAAAAAGTT
8822489 AAAAAAATTAAAA
1 AAAAAAATTAAAA
8822502 AAAAATAATTATGAAA
1 AAAAA-AATTA--AAA
8822518 ATAAAAAATTAAAA
1 A-AAAAAATTAAAA
8822532 AAAAAA
1 AAAAAA
8822538 CAGAATTTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
13 10 0.31
14 9 0.28
16 9 0.28
17 4 0.12
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.18
Consensus pattern (13 bp):
AAAAAAATTAAAA
Found at i:8829717 original size:27 final size:28
Alignment explanation
Indices: 8829664--8829717 Score: 65
Period size: 27 Copynumber: 1.9 Consensus size: 28
8829654 CAAAGAAAAT
* *
8829664 CAAAATGGTGATGATTTTCACGATAGGGG
1 CAAAATGGTCAT-ATTTTCACCATAGGGG
*
8829693 CAAAATGGTCAT-TTTTCACCTTAGG
1 CAAAATGGTCATATTTTCACCATAGG
8829718 TCAAAATTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 11 0.50
29 11 0.50
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (28 bp):
CAAAATGGTCATATTTTCACCATAGGGG
Found at i:8829932 original size:3 final size:3
Alignment explanation
Indices: 8829924--8829961 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
8829914 CCAACAGCTT
8829924 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
8829962 TTTCACATTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:8830671 original size:2 final size:2
Alignment explanation
Indices: 8830664--8830698 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
8830654 CATTATGTTG
8830664 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8830699 AATAATGTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8835613 original size:2 final size:2
Alignment explanation
Indices: 8835606--8835656 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
8835596 GAATCAACAT
8835606 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
8835648 TC TC TC TC T
1 TC TC TC TC T
8835657 TTCTTATTTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:8846170 original size:34 final size:34
Alignment explanation
Indices: 8846132--8846325 Score: 104
Period size: 34 Copynumber: 5.4 Consensus size: 34
8846122 ATCATTAGTT
8846132 TGTGCACTCACACAACACACCATTATCACCGTCA
1 TGTGCACTCACACAACACACCATTATCACCGTCA
* * * * * *
8846166 TGTGCACTCCTACCCTGCACATAGCATATATCATCAGT-G
1 TGTGCACT-C-ACAC--AACACACCAT-TATCA-CCGTCA
* * *
8846205 TGTTCACTCACACAGCACACCACTATCACCGTCA
1 TGTGCACTCACACAACACACCATTATCACCGTCA
* * * *
8846239 TGTGCACTCCTACACTACACATAGCATATATCATCAGT-G
1 TGTGCACT-C-ACAC-A-ACACACCAT-TATCA-CCGTCA
* * * *
8846278 TGTACACTCACATAGCACACCACTATCACCGTCA
1 TGTGCACTCACACAACACACCATTATCACCGTCA
*
8846312 TGTGCACTCCCACA
1 TGTGCACTCACACA
8846326 CCGCACACAC
Statistics
Matches: 113, Mismatches: 33, Indels: 28
0.65 0.19 0.16
Matches are distributed among these distances:
33 6 0.05
34 36 0.32
35 12 0.11
36 8 0.07
37 7 0.06
38 14 0.12
39 24 0.21
40 6 0.05
ACGTcount: A:0.29, C:0.36, G:0.11, T:0.24
Consensus pattern (34 bp):
TGTGCACTCACACAACACACCATTATCACCGTCA
Found at i:8846186 original size:73 final size:73
Alignment explanation
Indices: 8846093--8846332 Score: 356
Period size: 73 Copynumber: 3.3 Consensus size: 73
8846083 ATCATCATCG
* * * * * *
8846093 TGTGCACTCCCACA-TCGCACATAGCATATATCATTAGTTTGTGCACTCACACAACACACCATTA
1 TGTGCACTCCTACACT-GCACATAGCATATATCATCAGTGTGTACACTCACACAGCACACCACTA
8846157 TCACCGTCA
65 TCACCGTCA
* *
8846166 TGTGCACTCCTACCCTGCACATAGCATATATCATCAGTGTGTTCACTCACACAGCACACCACTAT
1 TGTGCACTCCTACACTGCACATAGCATATATCATCAGTGTGTACACTCACACAGCACACCACTAT
8846231 CACCGTCA
66 CACCGTCA
* *
8846239 TGTGCACTCCTACACTACACATAGCATATATCATCAGTGTGTACACTCACATAGCACACCACTAT
1 TGTGCACTCCTACACTGCACATAGCATATATCATCAGTGTGTACACTCACACAGCACACCACTAT
8846304 CACCGTCA
66 CACCGTCA
* *
8846312 TGTGCACTCCCACACCGCACA
1 TGTGCACTCCTACACTGCACA
8846333 CACACGGTTA
Statistics
Matches: 152, Mismatches: 14, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
73 151 0.99
74 1 0.01
ACGTcount: A:0.29, C:0.35, G:0.12, T:0.24
Consensus pattern (73 bp):
TGTGCACTCCTACACTGCACATAGCATATATCATCAGTGTGTACACTCACACAGCACACCACTAT
CACCGTCA
Found at i:8846213 original size:39 final size:38
Alignment explanation
Indices: 8846059--8846286 Score: 103
Period size: 39 Copynumber: 6.1 Consensus size: 38
8846049 TCATCCTATG
* *
8846059 CACTCCCACACTGCA-AAAGGCA-ATATCATCA-TCGTGT
1 CACTCCTACACTGCACATA-GCATATATCATCAGT-GTGT
* * *
8846096 GCACTCCCACA-TCGCACATAGCATATATCATTAGTTTGT
1 -CACTCCTACACT-GCACATAGCATATATCATCAGTGTGT
* * *
8846135 GCACT-C-ACAC--AACACACCAT-TATCACCGTCA-TGTG-
1 -CACTCCTACACTGCACATAGCATATATCA---TCAGTGTGT
*
8846170 CACTCCTACCCTGCACATAGCATATATCATCAGTGTGTT
1 CACTCCTACACTGCACATAGCATATATCATCAGTGTG-T
* * * *
8846209 CACT-C-ACACAGCAC--ACCACTATCACCGTCA-TGTG-
1 CACTCCTACACTGCACATAGCA-TAT-ATCATCAGTGTGT
*
8846243 CACTCCTACACTACACATAGCATATATCATCAGTGTGT
1 CACTCCTACACTGCACATAGCATATATCATCAGTGTGT
8846281 ACACTC
1 -CACTC
8846287 ACATAGCACA
Statistics
Matches: 143, Mismatches: 22, Indels: 49
0.67 0.10 0.23
Matches are distributed among these distances:
34 13 0.09
35 12 0.08
36 28 0.20
37 29 0.20
38 28 0.20
39 32 0.22
40 1 0.01
ACGTcount: A:0.30, C:0.33, G:0.12, T:0.25
Consensus pattern (38 bp):
CACTCCTACACTGCACATAGCATATATCATCAGTGTGT
Found at i:8846944 original size:2 final size:2
Alignment explanation
Indices: 8846937--8846966 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
8846927 TATAGAAAAC
*
8846937 CT CT CT CT CT GT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
8846967 AAAATGTCTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.47, G:0.03, T:0.50
Consensus pattern (2 bp):
CT
Found at i:8852471 original size:2 final size:2
Alignment explanation
Indices: 8852464--8852508 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
8852454 NNNNNNNNNN
8852464 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8852506 TA T
1 TA T
8852509 GTTGTGTACT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8852583 original size:42 final size:42
Alignment explanation
Indices: 8852524--8852611 Score: 140
Period size: 42 Copynumber: 2.1 Consensus size: 42
8852514 GTACTGATAT
*
8852524 TGACTCGGCTATGTGCGAGTAGGAGTGCGCATAAGCCGATGA
1 TGACTCGACTATGTGCGAGTAGGAGTGCGCATAAGCCGATGA
* * *
8852566 TGACTCGACTATGTGCGAGTGGGAGTGTGTATAAGCCGATGA
1 TGACTCGACTATGTGCGAGTAGGAGTGCGCATAAGCCGATGA
8852608 TGAC
1 TGAC
8852612 CCAGCCATGT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.24, C:0.17, G:0.35, T:0.24
Consensus pattern (42 bp):
TGACTCGACTATGTGCGAGTAGGAGTGCGCATAAGCCGATGA
Found at i:8852622 original size:42 final size:42
Alignment explanation
Indices: 8852534--8852653 Score: 134
Period size: 42 Copynumber: 2.8 Consensus size: 42
8852524 TGACTCGGCT
* * * *
8852534 ATGTGCGAGTAGGAGTGCGCATAAGCCGATGATGACTCGACT
1 ATGTGCGAGTGGGAGTGCGTATAAGCCGATGATGACCCGACC
*
8852576 ATGTGCGAGTGGGAGTGTGTATAAGCCGATGATGACCC-AGCC
1 ATGTGCGAGTGGGAGTGCGTATAAGCCGATGATGACCCGA-CC
* * * *
8852618 ATGTGCTAGTGGGGAGTGCATATGAGCTGATGATGA
1 ATGTGCGAGT-GGGAGTGCGTATAAGCCGATGATGA
8852654 TGGGAGGGTG
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
41 1 0.02
42 44 0.67
43 21 0.32
ACGTcount: A:0.25, C:0.16, G:0.36, T:0.23
Consensus pattern (42 bp):
ATGTGCGAGTGGGAGTGCGTATAAGCCGATGATGACCCGACC
Found at i:8852877 original size:21 final size:21
Alignment explanation
Indices: 8852844--8852901 Score: 98
Period size: 21 Copynumber: 2.8 Consensus size: 21
8852834 AATGCTCTGT
* *
8852844 TTTTTGCTGCAGCGAGTTTCA
1 TTTTCGCTACAGCGAGTTTCA
8852865 TTTTCGCTACAGCGAGTTTCA
1 TTTTCGCTACAGCGAGTTTCA
8852886 TTTTCGCTACAGCGAG
1 TTTTCGCTACAGCGAG
8852902 AAACTCTCAG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.38
Consensus pattern (21 bp):
TTTTCGCTACAGCGAGTTTCA
Found at i:8856504 original size:25 final size:25
Alignment explanation
Indices: 8856454--8856504 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
8856444 AATAAAAAAT
*
8856454 ATAAATATATTATACTTACATTTTA
1 ATAAATATATTATACTTACATATTA
* * *
8856479 ATAAATATATTTTATTTATATATTA
1 ATAAATATATTATACTTACATATTA
8856504 A
1 A
8856505 AATATTATAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (25 bp):
ATAAATATATTATACTTACATATTA
Found at i:8860272 original size:30 final size:30
Alignment explanation
Indices: 8860236--8860303 Score: 100
Period size: 30 Copynumber: 2.3 Consensus size: 30
8860226 TTCAATTTCC
* * *
8860236 TCTTTATATTTTTATTTTGAGTTAAATAAG
1 TCTTTATATTTTTATTGTGAGTCAAATAAA
*
8860266 TTTTTATATTTTTATTGTGAGTCAAATAAA
1 TCTTTATATTTTTATTGTGAGTCAAATAAA
8860296 TCTTTATA
1 TCTTTATA
8860304 ACTAATTATT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.31, C:0.04, G:0.09, T:0.56
Consensus pattern (30 bp):
TCTTTATATTTTTATTGTGAGTCAAATAAA
Found at i:8863426 original size:2 final size:2
Alignment explanation
Indices: 8863419--8863514 Score: 104
Period size: 2 Copynumber: 48.5 Consensus size: 2
8863409 GAAAATTACA
*
8863419 TC TC TC TC TC TC TC TC TC TC TC TC TT TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
** ** * * * *
8863461 NA AA T- TA AC TA TC TC TC TC TC TC TC TC TC TC TC TC TT TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
8863502 TC TC TC TC TC TC T
1 TC TC TC TC TC TC T
8863515 TTATGTATAT
Statistics
Matches: 80, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
1 1 0.01
2 79 0.99
ACGTcount: A:0.06, C:0.43, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:8877906 original size:35 final size:35
Alignment explanation
Indices: 8877861--8877930 Score: 113
Period size: 35 Copynumber: 2.0 Consensus size: 35
8877851 ATAAAATATT
* *
8877861 ACTCTGATATTATTTGTTTCTTCTTAAAATTGATA
1 ACTCTAATATTACTTGTTTCTTCTTAAAATTGATA
*
8877896 ACTCTAATATTACTTGTTTCTTCTTAAAGTTGATA
1 ACTCTAATATTACTTGTTTCTTCTTAAAATTGATA
8877931 TCTCCTTAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.29, C:0.13, G:0.09, T:0.50
Consensus pattern (35 bp):
ACTCTAATATTACTTGTTTCTTCTTAAAATTGATA
Found at i:8878168 original size:25 final size:26
Alignment explanation
Indices: 8878121--8878169 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
8878111 CGTCATGAAT
*
8878121 AATAATAATTCATAATTCAATAATTA
1 AATAATAATTCATAAATCAATAATTA
8878147 AATAAT-ATTCATATAATC-ATAAT
1 AATAATAATTCATA-AATCAATAAT
8878170 AGAAAATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 12 0.57
26 9 0.43
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.39
Consensus pattern (26 bp):
AATAATAATTCATAAATCAATAATTA
Found at i:8889803 original size:16 final size:16
Alignment explanation
Indices: 8889778--8889808 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8889768 ATGTAACAGA
8889778 AAATAAAACCACATAC
1 AAATAAAACCACATAC
*
8889794 AAATACAACCACATA
1 AAATAAAACCACATA
8889809 GAATAAGGGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.26, G:0.00, T:0.13
Consensus pattern (16 bp):
AAATAAAACCACATAC
Found at i:8912091 original size:27 final size:27
Alignment explanation
Indices: 8912061--8912115 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
8912051 CATGGTGGTC
* *
8912061 AATGTGTGTCTGTGGTGATACTAGACA
1 AATGTGTGCCTATGGTGATACTAGACA
*
8912088 AATGTGTGCCTATGGTGATATTAGACA
1 AATGTGTGCCTATGGTGATACTAGACA
8912115 A
1 A
8912116 GAGATCAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.29, C:0.11, G:0.27, T:0.33
Consensus pattern (27 bp):
AATGTGTGCCTATGGTGATACTAGACA
Found at i:8913704 original size:5 final size:5
Alignment explanation
Indices: 8913696--8913720 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
8913686 CTTACCTTAC
8913696 CTTTT CTTTT CTTTT CTTTT CTTTT
1 CTTTT CTTTT CTTTT CTTTT CTTTT
8913721 TTTATTTCGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
CTTTT
Found at i:8919984 original size:12 final size:12
Alignment explanation
Indices: 8919952--8919985 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
8919942 GGAAAATTTT
8919952 TTTTAATTATTA
1 TTTTAATTATTA
* *
8919964 TTATCATTATTA
1 TTTTAATTATTA
8919976 TTTTAATTAT
1 TTTTAATTAT
8919986 GATACTACTC
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (12 bp):
TTTTAATTATTA
Found at i:8920394 original size:25 final size:26
Alignment explanation
Indices: 8920366--8920417 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
8920356 TTTATCCAAA
8920366 ATTTAATTATAAA-TATTAATTATTG
1 ATTTAATTATAAACTATTAATTATTG
* * *
8920391 ATTTAATTTTAAACTTTTAATTTTTG
1 ATTTAATTATAAACTATTAATTATTG
8920417 A
1 A
8920418 ACCTAAACAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.56
Consensus pattern (26 bp):
ATTTAATTATAAACTATTAATTATTG
Found at i:8923270 original size:2 final size:2
Alignment explanation
Indices: 8923263--8923298 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
8923253 GTTCAACGAA
8923263 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8923299 TTGTCATTGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8924034 original size:21 final size:20
Alignment explanation
Indices: 8924002--8924040 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
8923992 ACATTATAAT
8924002 TATTATTATCGTACGATACA
1 TATTATTATCGTACGATACA
8924022 TATTATGTATCGTACGATA
1 TATTAT-TATCGTACGATA
8924041 TGACACGATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.41
Consensus pattern (20 bp):
TATTATTATCGTACGATACA
Found at i:8970452 original size:28 final size:28
Alignment explanation
Indices: 8970393--8970565 Score: 159
Period size: 28 Copynumber: 6.0 Consensus size: 28
8970383 TTAAGACAAC
* * *
8970393 TCTTGTCTTTAATTAAGACAAAAATATTTTT
1 TCTTGTC-TAAATTAAGAC--AAACATGTTT
* *
8970424 TCTTGTCTAAATTGAGACAAATATGTTT
1 TCTTGTCTAAATTAAGACAAACATGTTT
* * *
8970452 TCTTGTCTAGATTAAGACAAAAAATATTTT
1 TCTTGTCTAAATTAAGAC-AAACAT-GTTT
* * *
8970482 TCATATCTTAAATTAAGACAAACATATTT
1 TCTTGTC-TAAATTAAGACAAACATGTTT
8970511 TCTTGTCTAAATTAAGACCAAACATGTTT
1 TCTTGTCTAAATTAAGA-CAAACATGTTT
* *
8970540 TCTTATC-AAATTAAGACGAACATGTT
1 TCTTGTCTAAATTAAGACAAACATGTT
8970566 AAAGCTGCCA
Statistics
Matches: 121, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
27 9 0.07
28 44 0.36
29 29 0.24
30 22 0.18
31 17 0.14
ACGTcount: A:0.38, C:0.13, G:0.09, T:0.40
Consensus pattern (28 bp):
TCTTGTCTAAATTAAGACAAACATGTTT
Found at i:8970494 original size:59 final size:58
Alignment explanation
Indices: 8970393--8970562 Score: 184
Period size: 59 Copynumber: 2.9 Consensus size: 58
8970383 TTAAGACAAC
* * * * * *
8970393 TCTTGTCTTTAATTAAGACAAAAATATTTTTTCTTGTCTAAATTGAGACAAATATGTTT
1 TCTTGTC-TAAATTAAGACAAAAATATTTTTTCATATCTAAATTAAGACAAACATATTT
*
8970452 TCTTGTCTAGATTAAGACAAAAA-ATATTTTTCATATCTTAAATTAAGACAAACATATTT
1 TCTTGTCTAAATTAAGACAAAAATAT-TTTTTCATATC-TAAATTAAGACAAACATATTT
* * * * *
8970511 TCTTGTCTAAATTAAGAC-CAAACATGTTTTCTTATC-AAATTAAGACGAACAT
1 TCTTGTCTAAATTAAGACAAAAATATTTTTTCATATCTAAATTAAGACAAACAT
8970563 GTTAAAGCTG
Statistics
Matches: 96, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
56 15 0.16
57 2 0.02
58 35 0.36
59 44 0.46
ACGTcount: A:0.38, C:0.13, G:0.09, T:0.40
Consensus pattern (58 bp):
TCTTGTCTAAATTAAGACAAAAATATTTTTTCATATCTAAATTAAGACAAACATATTT
Found at i:8973160 original size:36 final size:36
Alignment explanation
Indices: 8973115--8973257 Score: 135
Period size: 37 Copynumber: 3.7 Consensus size: 36
8973105 TAGCCAGAGT
*
8973115 CATCGTGTGCACCCCCACATCGTGCACAACTAATGC
1 CATCATGTGCACCCCCACATCGTGCACAACTAATGC
* * *
8973151 CATCATGTGCTCCCCCCACATCGCGCACATGGCATATAT-C
1 CATCATGTGC-ACCCCCACATCGTGCACA--AC-TA-ATGC
8973191 ATCATCATCTTGTGCACCCCCACATCGTGCACAACTAATGC
1 --CATCA---TGTGCACCCCCACATCGTGCACAACTAATGC
*
8973232 CATCATGTGCTCCTCCCACATCGTGC
1 CATCATGTGCACC-CCCACATCGTGC
8973258 CCATAGGCAA
Statistics
Matches: 87, Mismatches: 8, Indels: 23
0.74 0.07 0.19
Matches are distributed among these distances:
36 16 0.18
37 28 0.32
39 6 0.07
40 5 0.06
41 5 0.06
42 6 0.07
44 16 0.18
45 5 0.06
ACGTcount: A:0.23, C:0.39, G:0.15, T:0.23
Consensus pattern (36 bp):
CATCATGTGCACCCCCACATCGTGCACAACTAATGC
Found at i:8973207 original size:81 final size:81
Alignment explanation
Indices: 8973114--8973277 Score: 267
Period size: 81 Copynumber: 2.0 Consensus size: 81
8973104 ATAGCCAGAG
8973114 TCATCGTGTGCACCCCCACATCGTGCACAACTAATGCCATCATGTGCTCCCCCCACATCGCGCAC
1 TCATCGTGTGCACCCCCACATCGTGCACAACTAATGCCATCATGTGCTCCCCCCACATCGCGCAC
8973179 AT-GGCATATATCATCA
66 ATAGGCA-ATATCATCA
* * * *
8973195 TCATCTTGTGCACCCCCACATCGTGCACAACTAATGCCATCATGTGCTCCTCCCACATCGTGCCC
1 TCATCGTGTGCACCCCCACATCGTGCACAACTAATGCCATCATGTGCTCCCCCCACATCGCGCAC
*
8973260 ATAGGCAATCTCATCA
66 ATAGGCAATATCATCA
8973276 TC
1 TC
8973278 CACACTCCCT
Statistics
Matches: 77, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
81 73 0.95
82 4 0.05
ACGTcount: A:0.24, C:0.38, G:0.14, T:0.24
Consensus pattern (81 bp):
TCATCGTGTGCACCCCCACATCGTGCACAACTAATGCCATCATGTGCTCCCCCCACATCGCGCAC
ATAGGCAATATCATCA
Found at i:8985745 original size:27 final size:30
Alignment explanation
Indices: 8985715--8985773 Score: 79
Period size: 27 Copynumber: 2.1 Consensus size: 30
8985705 ATTTTCTAGT
* *
8985715 TTTCCTTTGT-TTT-CTTTCTT-TTCTTCC
1 TTTCCTCTGTATTTCCTCTCTTGTTCTTCC
8985742 TTTCCTCTGTATTTCCTCTCTTGTTCTTCC
1 TTTCCTCTGTATTTCCTCTCTTGTTCTTCC
8985772 TT
1 TT
8985774 ATGGCTGGCC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
27 9 0.33
28 3 0.11
29 6 0.22
30 9 0.33
ACGTcount: A:0.02, C:0.29, G:0.05, T:0.64
Consensus pattern (30 bp):
TTTCCTCTGTATTTCCTCTCTTGTTCTTCC
Found at i:8990452 original size:28 final size:27
Alignment explanation
Indices: 8990416--8990468 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
8990406 ATATCCTGGT
*
8990416 GGTGGAAAATTACAATTTTGCCCCTGA
1 GGTGGAAAATTACAATTTTACCCCTGA
*
8990443 GGTGGCAAAATTACCATTTTACCCCT
1 GGTGG-AAAATTACAATTTTACCCCT
8990469 ATACTCCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 5 0.22
28 18 0.78
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (27 bp):
GGTGGAAAATTACAATTTTACCCCTGA
Found at i:8990536 original size:20 final size:20
Alignment explanation
Indices: 8990513--8990558 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
8990503 CTTCTAAACC
8990513 TCAAATCATACT-TCAATAAG
1 TCAAATCATACTCT-AATAAG
*
8990533 TCAAATTATACTCTAATAAG
1 TCAAATCATACTCTAATAAG
8990553 TCAAAT
1 TCAAAT
8990559 GGGGTCAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 23 0.96
21 1 0.04
ACGTcount: A:0.46, C:0.17, G:0.04, T:0.33
Consensus pattern (20 bp):
TCAAATCATACTCTAATAAG
Found at i:8997764 original size:20 final size:20
Alignment explanation
Indices: 8997739--8997784 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
8997729 TTTTTATACC
8997739 TCAAATCATACTCCAATAAG
1 TCAAATCATACTCCAATAAG
* *
8997759 TCAAATTATACTCTAATAAG
1 TCAAATCATACTCCAATAAG
8997779 TCAAAT
1 TCAAAT
8997785 GGGGTAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.46, C:0.20, G:0.04, T:0.30
Consensus pattern (20 bp):
TCAAATCATACTCCAATAAG
Found at i:9000589 original size:20 final size:21
Alignment explanation
Indices: 9000559--9000603 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 21
9000549 TAGACCAAAT
* *
9000559 ATATCATTTTGGAATGTATCG
1 ATATCATTTTGAAAAGTATCG
*
9000580 ATAT-ATTTTGAAAAGTATCT
1 ATATCATTTTGAAAAGTATCG
9000600 ATAT
1 ATAT
9000604 GTCACGACTG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.36, C:0.07, G:0.13, T:0.44
Consensus pattern (21 bp):
ATATCATTTTGAAAAGTATCG
Found at i:9010791 original size:42 final size:42
Alignment explanation
Indices: 9010732--9010888 Score: 215
Period size: 42 Copynumber: 3.7 Consensus size: 42
9010722 ATATTAACCT
* *
9010732 GGCTATGTGCGAGTAGGAGTGCACATAAGCTGTTGTTGACTC
1 GGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGTTGACCC
9010774 GGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGTTGACCC
1 GGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGTTGACCC
** * ** *
9010816 CACTATGTGCGAGTGGGAGTGCACATAAGCCGTTACTAACCC
1 GGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGTTGACCC
* * *
9010858 GGCAATGTGCGAGTGGGAGTGCGCATAAGCC
1 GGCTATGTGCGAGTAGGAGTGCACATAAGCC
9010889 ATTGCATACG
Statistics
Matches: 103, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 103 1.00
ACGTcount: A:0.23, C:0.21, G:0.33, T:0.23
Consensus pattern (42 bp):
GGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGTTGACCC
Found at i:9013800 original size:21 final size:21
Alignment explanation
Indices: 9013775--9013866 Score: 98
Period size: 21 Copynumber: 4.4 Consensus size: 21
9013765 TGCAAGGGAG
* *
9013775 GTTTAAAAATAATTTAAGCAA
1 GTTTAAAAATCATTCAAGCAA
9013796 GTTTAAAAA-CTATTCAAAG-AA
1 GTTTAAAAATC-ATTC-AAGCAA
*
9013817 GTTCAAAAATCATTCAAGCAA
1 GTTTAAAAATCATTCAAGCAA
* *
9013838 TTTTAAAACTCATTCAAGCAA
1 GTTTAAAAATCATTCAAGCAA
*
9013859 TTTTAAAA
1 GTTTAAAA
9013867 CTTTTCACAT
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
20 3 0.05
21 54 0.89
22 4 0.07
ACGTcount: A:0.49, C:0.12, G:0.08, T:0.32
Consensus pattern (21 bp):
GTTTAAAAATCATTCAAGCAA
Found at i:9013935 original size:21 final size:21
Alignment explanation
Indices: 9013911--9013993 Score: 96
Period size: 21 Copynumber: 3.9 Consensus size: 21
9013901 TTAATTAGAT
* *
9013911 AAGTTTAAAAATTATTCAAAC
1 AAGTTCAAAAATCATTCAAAC
9013932 AAGTTCAAAAATGCACTT-AAAC
1 AAGTTCAAAAAT-CA-TTCAAAC
* *
9013954 AACTTAAAAAATCATTCAAAC
1 AAGTTCAAAAATCATTCAAAC
*
9013975 AAGTTCAAAGATCATTCAA
1 AAGTTCAAAAATCATTCAA
9013994 GTAATTTTAA
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
20 2 0.04
21 33 0.63
22 15 0.29
23 2 0.04
ACGTcount: A:0.52, C:0.16, G:0.06, T:0.27
Consensus pattern (21 bp):
AAGTTCAAAAATCATTCAAAC
Found at i:9019847 original size:18 final size:18
Alignment explanation
Indices: 9019804--9019840 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
9019794 CTTAATCTTT
*
9019804 TTATCGTGTTTAATCGTG
1 TTATCGTGTTTAAACGTG
9019822 TTATCGTGTTTAAACGTG
1 TTATCGTGTTTAAACGTG
9019840 T
1 T
9019841 ATACGTGACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.19, C:0.11, G:0.22, T:0.49
Consensus pattern (18 bp):
TTATCGTGTTTAAACGTG
Found at i:9020104 original size:20 final size:20
Alignment explanation
Indices: 9020017--9020107 Score: 68
Period size: 20 Copynumber: 4.8 Consensus size: 20
9020007 ATGTTATTAT
* * *
9020017 TATTTTTGTTTTATTATAAT
1 TATTTTTATTTAATTATAAA
9020037 TATTTTTA--TAATTAT--A
1 TATTTTTATTTAATTATAAA
* *
9020053 TATTTTAAATTTAAATAATAAA
1 TATTTT-TATTT-AATTATAAA
*
9020075 -A-TTATATTTAATTATAAA
1 TATTTTTATTTAATTATAAA
9020093 TATTTTTATTTAATT
1 TATTTTTATTTAATT
9020108 GTGTTAAACG
Statistics
Matches: 54, Mismatches: 9, Indels: 16
0.68 0.11 0.20
Matches are distributed among these distances:
16 6 0.11
17 1 0.02
18 14 0.26
19 6 0.11
20 25 0.46
21 1 0.02
22 1 0.02
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.59
Consensus pattern (20 bp):
TATTTTTATTTAATTATAAA
Found at i:9020120 original size:9 final size:9
Alignment explanation
Indices: 9020108--9020149 Score: 57
Period size: 9 Copynumber: 4.7 Consensus size: 9
9020098 TTATTTAATT
9020108 GTGTTAAAC
1 GTGTTAAAC
*
9020117 GTGTTAATC
1 GTGTTAAAC
*
9020126 GTATTAAAC
1 GTGTTAAAC
*
9020135 GTGTTAATC
1 GTGTTAAAC
9020144 GTGTTA
1 GTGTTA
9020150 CTAATCGTGT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (9 bp):
GTGTTAAAC
Found at i:9020132 original size:18 final size:18
Alignment explanation
Indices: 9020111--9020145 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
9020101 TTTAATTGTG
9020111 TTAAACGTGTTAATCGTA
1 TTAAACGTGTTAATCGTA
9020129 TTAAACGTGTTAATCGT
1 TTAAACGTGTTAATCGT
9020146 GTTACTAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.11, G:0.17, T:0.40
Consensus pattern (18 bp):
TTAAACGTGTTAATCGTA
Found at i:9030700 original size:27 final size:28
Alignment explanation
Indices: 9030643--9030701 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
9030633 TTGGGTGTGT
* * *
9030643 AAAATTACAATTTTTCCCCTAGGGTGGC
1 AAAATTACAATTTTACCCCTAGGCTGCC
* *
9030671 AAAATTACCATTTTACCCCTATGCT-CC
1 AAAATTACAATTTTACCCCTAGGCTGCC
9030698 AAAA
1 AAAA
9030702 AATACCAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
27 5 0.19
28 21 0.81
ACGTcount: A:0.34, C:0.25, G:0.10, T:0.31
Consensus pattern (28 bp):
AAAATTACAATTTTACCCCTAGGCTGCC
Found at i:9040390 original size:70 final size:71
Alignment explanation
Indices: 9040236--9040393 Score: 183
Period size: 70 Copynumber: 2.2 Consensus size: 71
9040226 GCTCTCAAAC
* * * *
9040236 AAAAGTATTGAGACTTAGTTAATAAGTCTCGAGACTTCTCAACCCGAGAGCAAAGATTGAGCTTC
1 AAAAGTATTGAGACTTAGTTAATAAGTCTCGAGACTTCTCAACCCGAGAGAAAAAATTAAGATTC
*
9040301 AGAGGT
66 AGAGGA
* * * * * * *
9040307 AATAGTATCGAGACTTAGTTCATAA-TTTTGAGACTTCTCAACTCGAGAGAAAAAATTAAGATTT
1 AAAAGTATTGAGACTTAGTTAATAAGTCTCGAGACTTCTCAACCCGAGAGAAAAAATTAAGATTC
*
9040371 AGGGGA
66 AGAGGA
*
9040377 AAAATTATTGAGACTTA
1 AAAAGTATTGAGACTTA
9040394 AGGAAAGAGT
Statistics
Matches: 71, Mismatches: 16, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
70 49 0.69
71 22 0.31
ACGTcount: A:0.38, C:0.13, G:0.20, T:0.28
Consensus pattern (71 bp):
AAAAGTATTGAGACTTAGTTAATAAGTCTCGAGACTTCTCAACCCGAGAGAAAAAATTAAGATTC
AGAGGA
Found at i:9040398 original size:21 final size:21
Alignment explanation
Indices: 9040374--9040413 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
9040364 AAGATTTAGG
*
9040374 GGAAAAATTATTGAGACTTAA
1 GGAAAAAGTATTGAGACTTAA
*
9040395 GGAAAGAGTATTGAGACTT
1 GGAAAAAGTATTGAGACTT
9040414 TTGAAATAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.42, C:0.05, G:0.25, T:0.28
Consensus pattern (21 bp):
GGAAAAAGTATTGAGACTTAA
Found at i:9041552 original size:42 final size:42
Alignment explanation
Indices: 9041506--9041590 Score: 134
Period size: 42 Copynumber: 2.0 Consensus size: 42
9041496 TAGCCAGGTT
* *
9041506 AGCACAGCTCATGTGCACTCATACACCGTACATGGCTGGGTC
1 AGCACAGCTCATGTGCACTCAGACACCGCACATGGCTGGGTC
* *
9041548 AGCACAGCTCATGTGCACTCCGACACCGCACATGGTTGGGTC
1 AGCACAGCTCATGTGCACTCAGACACCGCACATGGCTGGGTC
9041590 A
1 A
9041591 TAATTATCAC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.24, C:0.32, G:0.25, T:0.20
Consensus pattern (42 bp):
AGCACAGCTCATGTGCACTCAGACACCGCACATGGCTGGGTC
Found at i:9048103 original size:38 final size:36
Alignment explanation
Indices: 9048002--9048105 Score: 113
Period size: 38 Copynumber: 2.9 Consensus size: 36
9047992 ATAAAGTTAC
* **
9048002 AAGTGTCTCTTCAT-TAAGGACACAACCTTTCATTG
1 AAGTGTCTCTTTATCTTTGGACACAACCTTTCATTG
* * *
9048037 AAGTCTCTCTTTGTCTTTCGG-CATAACCTTCTCAATTG
1 AAGTGTCTCTTTATCTTT-GGACACAACCTT-TC-ATTG
9048075 AAGTGTCTCTTTATCTTTGGACACAACCTTT
1 AAGTGTCTCTTTATCTTTGGACACAACCTTT
9048106 AATCTTATAA
Statistics
Matches: 55, Mismatches: 9, Indels: 8
0.76 0.12 0.11
Matches are distributed among these distances:
35 11 0.20
36 9 0.16
37 7 0.13
38 28 0.51
ACGTcount: A:0.23, C:0.24, G:0.13, T:0.39
Consensus pattern (36 bp):
AAGTGTCTCTTTATCTTTGGACACAACCTTTCATTG
Found at i:9050237 original size:13 final size:13
Alignment explanation
Indices: 9050219--9050243 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9050209 GGAAAATGAG
9050219 ATTTTATAAAATA
1 ATTTTATAAAATA
9050232 ATTTTATAAAAT
1 ATTTTATAAAAT
9050244 TTTTGAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
ATTTTATAAAATA
Found at i:9052638 original size:26 final size:27
Alignment explanation
Indices: 9052595--9052649 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 27
9052585 AATTCTAAGA
* *
9052595 ATAATTTTACCATTAG-AAGTGGATGG
1 ATAATTTTACCATCAGAAAATGGATGG
*
9052621 ATAATTTTAGCATCAGAAAATGGATGG
1 ATAATTTTACCATCAGAAAATGGATGG
9052648 AT
1 AT
9052650 GCCTTAATCC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.38, C:0.07, G:0.22, T:0.33
Consensus pattern (27 bp):
ATAATTTTACCATCAGAAAATGGATGG
Found at i:9052731 original size:18 final size:18
Alignment explanation
Indices: 9052662--9052734 Score: 67
Period size: 18 Copynumber: 4.1 Consensus size: 18
9052652 CTTAATCCAC
*
9052662 TAACCC-ACTAAAAATGGA
1 TAACCCAAC-AAAAGTGGA
* *
9052680 TAATCCACCAAAAGTGGA
1 TAACCCAACAAAAGTGGA
* **
9052698 TAACCCATCATTAGTGGA
1 TAACCCAACAAAAGTGGA
*
9052716 TCACCCAACAAAAGTGGA
1 TAACCCAACAAAAGTGGA
9052734 T
1 T
9052735 GGATACTTGT
Statistics
Matches: 43, Mismatches: 11, Indels: 2
0.77 0.20 0.04
Matches are distributed among these distances:
18 42 0.98
19 1 0.02
ACGTcount: A:0.42, C:0.23, G:0.15, T:0.19
Consensus pattern (18 bp):
TAACCCAACAAAAGTGGA
Found at i:9056172 original size:17 final size:16
Alignment explanation
Indices: 9056150--9056184 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
9056140 GAGATGAAAG
9056150 AGAGAAAAGAAAAAAAA
1 AGAG-AAAGAAAAAAAA
*
9056167 AGAGAAAGAAAAGAAA
1 AGAGAAAGAAAAAAAA
9056183 AG
1 AG
9056185 TCATAGCTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (16 bp):
AGAGAAAGAAAAAAAA
Found at i:9062357 original size:28 final size:28
Alignment explanation
Indices: 9062309--9062363 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
9062299 CAAGTGTTGG
*
9062309 GGCAAAAAATTTACCGATTTGCCCCTAA
1 GGCAAAAAAATTACCGATTTGCCCCTAA
*
9062337 GGCAAAAAAATTA-TGATTTTGCCCCTA
1 GGCAAAAAAATTACCGA-TTTGCCCCTA
9062364 TACTCCGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.08
28 22 0.92
ACGTcount: A:0.36, C:0.22, G:0.15, T:0.27
Consensus pattern (28 bp):
GGCAAAAAAATTACCGATTTGCCCCTAA
Found at i:9063806 original size:42 final size:42
Alignment explanation
Indices: 9063759--9063875 Score: 162
Period size: 42 Copynumber: 2.8 Consensus size: 42
9063749 CATATCATAT
* * * **
9063759 GCAACGGCTTATGCGCACTCCCACTCTCACATAGTTGGGTCA
1 GCAACGGCTTATGTGCATTCCCACTCGCACATAGCCGGGTCA
*
9063801 GCAACGGCTTATGTGTATTCCCACTCGCACATAGCCGGGTCA
1 GCAACGGCTTATGTGCATTCCCACTCGCACATAGCCGGGTCA
* *
9063843 GCAACAGCTTATGTGCATTCCTACTCGCACATA
1 GCAACGGCTTATGTGCATTCCCACTCGCACATA
9063876 ACCAAGTCAA
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 66 1.00
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.25
Consensus pattern (42 bp):
GCAACGGCTTATGTGCATTCCCACTCGCACATAGCCGGGTCA
Found at i:9064699 original size:19 final size:19
Alignment explanation
Indices: 9064656--9064699 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
9064646 AAGAACAAGA
*
9064656 AGAAGAAGCTGCTGGAAAT
1 AGAAGAAGCTGCTGGAAAG
** *
9064675 TCAAGAAGCTGCTGGAAGG
1 AGAAGAAGCTGCTGGAAAG
9064694 AGAAGA
1 AGAAGA
9064700 TATTTATAGC
Statistics
Matches: 19, Mismatches: 6, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.41, C:0.11, G:0.34, T:0.14
Consensus pattern (19 bp):
AGAAGAAGCTGCTGGAAAG
Found at i:9067493 original size:14 final size:14
Alignment explanation
Indices: 9067470--9067505 Score: 51
Period size: 12 Copynumber: 2.8 Consensus size: 14
9067460 ATATTTGATG
9067470 TTAT-ATTATTTTT
1 TTATAATTATTTTT
9067483 TTATAATTA--TTT
1 TTATAATTATTTTT
9067495 TTATAATTATT
1 TTATAATTATT
9067506 GATTTTAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
12 12 0.60
13 4 0.20
14 4 0.20
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (14 bp):
TTATAATTATTTTT
Found at i:9067495 original size:12 final size:12
Alignment explanation
Indices: 9067480--9067505 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
9067470 TTATATTATT
9067480 TTTTTATAATTA
1 TTTTTATAATTA
9067492 TTTTTATAATTA
1 TTTTTATAATTA
9067504 TT
1 TT
9067506 GATTTTAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (12 bp):
TTTTTATAATTA
Found at i:9068445 original size:34 final size:34
Alignment explanation
Indices: 9068399--9068465 Score: 116
Period size: 34 Copynumber: 2.0 Consensus size: 34
9068389 ATAGCTAACA
*
9068399 TTGAAGCAAACAATGCCTTCGTTGAAATGACTCG
1 TTGAAGCAAACAATGCCTTCATTGAAATGACTCG
*
9068433 TTGAAGCTAACAATGCCTTCATTGAAATGACTC
1 TTGAAGCAAACAATGCCTTCATTGAAATGACTC
9068466 TAATTGCTCC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (34 bp):
TTGAAGCAAACAATGCCTTCATTGAAATGACTCG
Found at i:9071603 original size:21 final size:21
Alignment explanation
Indices: 9071552--9071605 Score: 90
Period size: 21 Copynumber: 2.6 Consensus size: 21
9071542 CATCATCTGT
*
9071552 ACGAGGGTTCCTCTCAACTGC
1 ACGAGGGTTTCTCTCAACTGC
*
9071573 ACAAGGGTTTCTCTCAACTGC
1 ACGAGGGTTTCTCTCAACTGC
9071594 ACGAGGGTTTCT
1 ACGAGGGTTTCT
9071606 TGTTAAAACC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.20, C:0.28, G:0.24, T:0.28
Consensus pattern (21 bp):
ACGAGGGTTTCTCTCAACTGC
Found at i:9087504 original size:16 final size:17
Alignment explanation
Indices: 9087472--9087505 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
9087462 ATTTAGGTAA
*
9087472 AATATGAAAATATTTTT
1 AATAAGAAAATATTTTT
9087489 AATAAGAAAA-ATTTTT
1 AATAAGAAAATATTTTT
9087505 A
1 A
9087506 TTGATGCTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (17 bp):
AATAAGAAAATATTTTT
Found at i:9088001 original size:3 final size:3
Alignment explanation
Indices: 9087993--9088053 Score: 122
Period size: 3 Copynumber: 20.3 Consensus size: 3
9087983 TGCTGGAGTC
9087993 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
9088041 TAT TAT TAT TAT T
1 TAT TAT TAT TAT T
9088054 TCTTTTGCTT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 58 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:9088542 original size:25 final size:25
Alignment explanation
Indices: 9088489--9088542 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
9088479 AATTTTTAAA
* *
9088489 AAATTTACTATTTACTATTTTTTGG
1 AAATTTACTATTTACTATTTTATCG
*
9088514 AAATTTACTATTTACT-TTTGTATCT
1 AAATTTACTATTTACTATTT-TATCG
9088539 AAAT
1 AAAT
9088543 ATTTTTTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 3 0.12
25 22 0.88
ACGTcount: A:0.31, C:0.09, G:0.06, T:0.54
Consensus pattern (25 bp):
AAATTTACTATTTACTATTTTATCG
Found at i:9096619 original size:25 final size:26
Alignment explanation
Indices: 9096591--9096644 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 26
9096581 ATGGGCTCTC
9096591 CCCAATT-TCTTCCTATTGGGCCATG
1 CCCAATTCTCTTCCTATTGGGCCATG
* *
9096616 CCC-ATTCTTTTCTTATTGGGCCATG
1 CCCAATTCTCTTCCTATTGGGCCATG
9096641 CCCA
1 CCCA
9096645 CTCTTTTTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 3 0.12
25 22 0.88
ACGTcount: A:0.15, C:0.33, G:0.15, T:0.37
Consensus pattern (26 bp):
CCCAATTCTCTTCCTATTGGGCCATG
Found at i:9096649 original size:25 final size:25
Alignment explanation
Indices: 9096604--9096651 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
9096594 AATTTCTTCC
*
9096604 TATTGGGCCATGCCCATTCTTTTCT
1 TATTGGGCCATGCCCACTCTTTTCT
9096629 TATTGGGCCATGCCCACTCTTTT
1 TATTGGGCCATGCCCACTCTTTT
9096652 TCTTTCTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.12, C:0.29, G:0.17, T:0.42
Consensus pattern (25 bp):
TATTGGGCCATGCCCACTCTTTTCT
Found at i:9096661 original size:10 final size:10
Alignment explanation
Indices: 9096646--9096688 Score: 50
Period size: 10 Copynumber: 4.0 Consensus size: 10
9096636 CCATGCCCAC
9096646 TCTTTTTCTT
1 TCTTTTTCTT
9096656 TCTTTTTCTT
1 TCTTTTTCTT
*
9096666 TTTCTTTTCTTT
1 TCT-TTTTC-TT
9096678 TCTTTCTTCTT
1 TCTTT-TTCTT
9096689 CCTCTTCTCC
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
10 12 0.43
11 9 0.32
12 7 0.25
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (10 bp):
TCTTTTTCTT
Found at i:9096667 original size:16 final size:16
Alignment explanation
Indices: 9096646--9096688 Score: 61
Period size: 16 Copynumber: 2.6 Consensus size: 16
9096636 CCATGCCCAC
9096646 TCTTTTTC-TTTCTTTT
1 TCTTTTTCTTTTC-TTT
9096662 TCTTTTTCTTTTCTTT
1 TCTTTTTCTTTTCTTT
9096678 TCTTTCTTCTT
1 TCTTT-TTCTT
9096689 CCTCTTCTCC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
16 16 0.64
17 9 0.36
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (16 bp):
TCTTTTTCTTTTCTTT
Found at i:9096696 original size:16 final size:14
Alignment explanation
Indices: 9096651--9096696 Score: 51
Period size: 12 Copynumber: 3.3 Consensus size: 14
9096641 CCCACTCTTT
9096651 TTCTTTCTTTT-TC
1 TTCTTTCTTTTCTC
*
9096664 TT-TTTCTTTTCTT
1 TTCTTTCTTTTCTC
9096677 TTCTTTCTTCTTCCTC
1 TTCTTTCTT-TT-CTC
9096693 TTCT
1 TTCT
9096697 CCTCCCGTCG
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
12 8 0.30
13 5 0.19
14 6 0.22
15 2 0.07
16 6 0.22
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (14 bp):
TTCTTTCTTTTCTC
Found at i:9096717 original size:30 final size:30
Alignment explanation
Indices: 9096683--9096821 Score: 104
Period size: 30 Copynumber: 5.0 Consensus size: 30
9096673 TCTTTTCTTT
9096683 CTTCTTCCTCTTCTCCTCCCGTCGGCCTTC
1 CTTCTTCCTCTTCTCCTCCCGTCGGCCTTC
*
9096713 CTTCTCTCC-CTTCTCCTCCCGTCCGCCTT-
1 CTTCT-TCCTCTTCTCCTCCCGTCGGCCTTC
* * *** *
9096742 -TT-TT-CTC-TC-CTTTCC-TTTTCCTTT
1 CTTCTTCCTCTTCTCCTCCCGTCGGCCTTC
*
9096766 CTTCTTTCTC-T-TC-TCCCGTCGGCCTTC
1 CTTCTTCCTCTTCTCCTCCCGTCGGCCTTC
9096793 CTTCTCTCCT-TTCTCCTCCCGTCGGCCTT
1 CTTCT-TCCTCTTCTCCTCCCGTCGGCCTT
9096822 TTTTCTCTCC
Statistics
Matches: 85, Mismatches: 12, Indels: 24
0.70 0.10 0.20
Matches are distributed among these distances:
23 5 0.06
24 4 0.05
25 5 0.06
26 7 0.08
27 16 0.19
28 6 0.07
29 2 0.02
30 37 0.44
31 3 0.04
ACGTcount: A:0.00, C:0.47, G:0.08, T:0.45
Consensus pattern (30 bp):
CTTCTTCCTCTTCTCCTCCCGTCGGCCTTC
Found at i:9096797 original size:80 final size:80
Alignment explanation
Indices: 9096669--9096877 Score: 330
Period size: 80 Copynumber: 2.6 Consensus size: 80
9096659 TTTTCTTTTT
* *
9096669 CTTTTCTTTT-CTTTCTTCTTCCTCTTCTCCTCCCGTCGGCCTTCCTTCTCTCCCTTCTCCTCCC
1 CTTTCCTTTTCCTTTCTTCTT--TC-TCTTCTCCCGTCGGCCTTCCTTCTCTCCCTTCTCCTCCC
9096733 GTCCGCCTTTTTTCTCTC
63 GTCCGCCTTTTTTCTCTC
*
9096751 CTTTCCTTTTCCTTTCTTCTTTCTCTTCTCCCGTCGGCCTTCCTTCTCTCCTTTCTCCTCCCGTC
1 CTTTCCTTTTCCTTTCTTCTTTCTCTTCTCCCGTCGGCCTTCCTTCTCTCCCTTCTCCTCCCGTC
*
9096816 GGCCTTTTTTCTCTC
66 CGCCTTTTTTCTCTC
* *
9096831 CTTTCCTTTTCCTTTCTTCTTTCTCTTCTCCCATCGACCTTCCTTCT
1 CTTTCCTTTTCCTTTCTTCTTTCTCTTCTCCCGTCGGCCTTCCTTCT
9096878 ATCTCATTTC
Statistics
Matches: 120, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
80 99 0.82
81 2 0.02
82 9 0.08
83 10 0.08
ACGTcount: A:0.01, C:0.43, G:0.06, T:0.50
Consensus pattern (80 bp):
CTTTCCTTTTCCTTTCTTCTTTCTCTTCTCCCGTCGGCCTTCCTTCTCTCCCTTCTCCTCCCGTC
CGCCTTTTTTCTCTC
Found at i:9096828 original size:30 final size:31
Alignment explanation
Indices: 9096759--9096835 Score: 104
Period size: 30 Copynumber: 2.5 Consensus size: 31
9096749 TCCTTTCCTT
*
9096759 TTCCTT-TCTTCTTTCTCTTCTCCCGTCGGCC
1 TTCCTTCTCTCCTTTCTC-TCTCCCGTCGGCC
9096790 TTCCTTCTCTCCTTTCTC-CTCCCGTCGGCC
1 TTCCTTCTCTCCTTTCTCTCTCCCGTCGGCC
**
9096820 TTTTTTCTCTCCTTTC
1 TTCCTTCTCTCCTTTC
9096836 CTTTTCCTTT
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
30 26 0.62
31 6 0.14
32 10 0.24
ACGTcount: A:0.00, C:0.43, G:0.08, T:0.49
Consensus pattern (31 bp):
TTCCTTCTCTCCTTTCTCTCTCCCGTCGGCC
Found at i:9096950 original size:59 final size:56
Alignment explanation
Indices: 9096829--9096956 Score: 168
Period size: 59 Copynumber: 2.2 Consensus size: 56
9096819 CTTTTTTCTC
*
9096829 TCCTTTCCTTTTCCTTTCTTCTTTCTCTTCTCCCATCGACCTTCCTTCTATCTCATT
1 TCCTTTCC-TTTCCTTTCTTCTTTCCCTTCTCCCATCGACCTTCCTTCTATCTCATT
* * *
9096886 TCCTTTCCTTTCCTTTCTTTTTTCCCTTCTCCTCCAATC-AGCCTTCCTTCTCTCTCCTT
1 TCCTTTCCTTTCCTTTCTTCTTTCCCTTCT-C-CC-ATCGA-CCTTCCTTCTATCTCATT
9096945 TCCTTTCCTTTC
1 TCCTTTCCTTTC
9096957 TTCTTTCTCT
Statistics
Matches: 63, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
56 20 0.32
57 9 0.14
58 3 0.05
59 31 0.49
ACGTcount: A:0.05, C:0.41, G:0.02, T:0.52
Consensus pattern (56 bp):
TCCTTTCCTTTCCTTTCTTCTTTCCCTTCTCCCATCGACCTTCCTTCTATCTCATT
Found at i:9097072 original size:10 final size:10
Alignment explanation
Indices: 9097059--9097130 Score: 53
Period size: 10 Copynumber: 7.3 Consensus size: 10
9097049 CCGTCACCTT
9097059 TCTTTTCTTC
1 TCTTTTCTTC
9097069 TC-TTTCTT-
1 TCTTTTCTTC
*
9097077 T-TTTTTTTC
1 TCTTTTCTTC
*
9097086 TTTTTTCTTC
1 TCTTTTCTTC
*
9097096 TCTCTTCTTC
1 TCTTTTCTTC
*
9097106 T-TCTTTCTTT
1 TCT-TTTCTTC
9097116 TCTTCTTCTTTC
1 TCTT-TTC-TTC
9097128 TCT
1 TCT
9097131 GGTCGACACT
Statistics
Matches: 48, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
8 6 0.12
9 8 0.17
10 25 0.52
11 4 0.08
12 5 0.10
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (10 bp):
TCTTTTCTTC
Found at i:9097088 original size:25 final size:25
Alignment explanation
Indices: 9097056--9097128 Score: 85
Period size: 27 Copynumber: 2.8 Consensus size: 25
9097046 CGCCCGTCAC
*
9097056 CTTTCTTTTCTTCTCTTTCTTTTTT
1 CTTTCTTTTCTTCTCTTTCTTTCTT
*
9097081 TTTTCTTTTTTCTTCTCTCTTC-TTCTT
1 CTTTC--TTTTCTTCTCT-TTCTTTCTT
9097108 CTTTCTTTTCTTCTTCTTTCT
1 CTTTCTTTTCTTC-TCTTTCT
9097129 CTGGTCGACA
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
25 15 0.38
26 3 0.08
27 19 0.47
28 3 0.08
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (25 bp):
CTTTCTTTTCTTCTCTTTCTTTCTT
Found at i:9097330 original size:16 final size:15
Alignment explanation
Indices: 9097296--9097339 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 15
9097286 ATTTTTATAT
9097296 TTATTTATTATTATTA
1 TTATTTATT-TTATTA
9097312 TTATTTATTTTATTAA
1 TTATTTATTTTATT-A
*
9097328 TTATTTCTTTTA
1 TTATTTATTTTA
9097340 CTTCCTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
15 5 0.19
16 21 0.81
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.70
Consensus pattern (15 bp):
TTATTTATTTTATTA
Found at i:9097720 original size:19 final size:18
Alignment explanation
Indices: 9097698--9097740 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 18
9097688 TTAATATTTT
9097698 AATATTATTTTATTCATAA
1 AATATTATTTTATTC-TAA
*
9097717 AATAATATTTTATTCTAA
1 AATATTATTTTATTCTAA
9097735 AATATT
1 AATATT
9097741 CTTCTCACCT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 8 0.36
19 14 0.64
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (18 bp):
AATATTATTTTATTCTAA
Found at i:9098849 original size:30 final size:29
Alignment explanation
Indices: 9098794--9098893 Score: 103
Period size: 30 Copynumber: 3.2 Consensus size: 29
9098784 ATGATTGAGT
*
9098794 ATGAAGAAGATGACAT-GCAGAGAGATGAA
1 ATGAAGAAGATGACATGGAAG-GAGATGAA
*
9098823 GATGAAAAAGATGACATGGAAGGAGATGAAA
1 -ATGAAGAAGATGACATGGAAGGAGATG-AA
*
9098854 ATTAAGGTGAAGATGACATGGAAGGAGATGGAA
1 ATGAA---GAAGATGACATGGAAGGAGAT-GAA
9098887 ATGAAGA
1 ATGAAGA
9098894 TGAAGACTGT
Statistics
Matches: 59, Mismatches: 5, Indels: 12
0.78 0.07 0.16
Matches are distributed among these distances:
30 27 0.46
31 5 0.08
33 26 0.44
34 1 0.02
ACGTcount: A:0.48, C:0.04, G:0.33, T:0.15
Consensus pattern (29 bp):
ATGAAGAAGATGACATGGAAGGAGATGAA
Found at i:9098870 original size:33 final size:33
Alignment explanation
Indices: 9098799--9098899 Score: 120
Period size: 33 Copynumber: 3.2 Consensus size: 33
9098789 TGAGTATGAA
* *
9098799 GAAGATGACAT-GCAGAGAGATGAAGATGAA-A-
1 GAAGATGACATGGAAG-GAGATGAAAATGAAGAT
* *
9098830 -AAGATGACATGGAAGGAGATGAAAATTAAGGT
1 GAAGATGACATGGAAGGAGATGAAAATGAAGAT
*
9098862 GAAGATGACATGGAAGGAGATGGAAATGAAGAT
1 GAAGATGACATGGAAGGAGATGAAAATGAAGAT
9098895 GAAGA
1 GAAGA
9098900 CTGTCAAGCC
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
30 22 0.37
31 3 0.05
33 34 0.58
ACGTcount: A:0.48, C:0.04, G:0.34, T:0.15
Consensus pattern (33 bp):
GAAGATGACATGGAAGGAGATGAAAATGAAGAT
Found at i:9104153 original size:20 final size:20
Alignment explanation
Indices: 9104128--9104168 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
9104118 ATAAGCCTTG
9104128 TTGATTT-TGATGAAATAAAA
1 TTGATTTAT-ATGAAATAAAA
*
9104148 TTGATTTATATGAAATGAAA
1 TTGATTTATATGAAATAAAA
9104168 T
1 T
9104169 GAGATTTGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 18 0.95
21 1 0.05
ACGTcount: A:0.44, C:0.00, G:0.15, T:0.41
Consensus pattern (20 bp):
TTGATTTATATGAAATAAAA
Found at i:9111103 original size:22 final size:22
Alignment explanation
Indices: 9111059--9111161 Score: 118
Period size: 22 Copynumber: 4.7 Consensus size: 22
9111049 GTGTGACTAG
* * *
9111059 TTTTTAGGCATTACGTTACTAA
1 TTTTTAGACATTACGTGATTAA
*
9111081 TTTTTAGACATTGCGTGATTAA
1 TTTTTAGACATTACGTGATTAA
9111103 TTTTT-GAACATTACGTGATTAA
1 TTTTTAG-ACATTACGTGATTAA
* * *
9111125 TTTTTGGACATTGCGTGATTAG
1 TTTTTAGACATTACGTGATTAA
*
9111147 TTTTTAGATATTACG
1 TTTTTAGACATTACG
9111162 AAACTGGTTG
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
21 1 0.01
22 67 0.97
23 1 0.01
ACGTcount: A:0.26, C:0.10, G:0.17, T:0.47
Consensus pattern (22 bp):
TTTTTAGACATTACGTGATTAA
Found at i:9111160 original size:44 final size:44
Alignment explanation
Indices: 9111037--9111161 Score: 144
Period size: 44 Copynumber: 2.8 Consensus size: 44
9111027 GTATAATCGG
** * * * *
9111037 TTTTTGGGTATTGTGTGACTAGTTTTTAGGCATTACGTTACTAA
1 TTTTTGGACATTGCGTGATTAGTTTTTAGACATTACGTGACTAA
* * *
9111081 TTTTTAGACATTGCGTGATTAATTTTT-GAACATTACGTGATTAA
1 TTTTTGGACATTGCGTGATTAGTTTTTAG-ACATTACGTGACTAA
*
9111125 TTTTTGGACATTGCGTGATTAGTTTTTAGATATTACG
1 TTTTTGGACATTGCGTGATTAGTTTTTAGACATTACG
9111162 AAACTGGTTG
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
43 1 0.01
44 65 0.97
45 1 0.01
ACGTcount: A:0.24, C:0.09, G:0.20, T:0.47
Consensus pattern (44 bp):
TTTTTGGACATTGCGTGATTAGTTTTTAGACATTACGTGACTAA
Found at i:9111228 original size:23 final size:23
Alignment explanation
Indices: 9111201--9111250 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
9111191 GTTGATAGAT
* *
9111201 ATTGCATGATTGGTTAGTAAGGC
1 ATTGCATGACTAGTTAGTAAGGC
*
9111224 ATTGCGTGACTAGTTAGTAAGGC
1 ATTGCATGACTAGTTAGTAAGGC
9111247 ATTG
1 ATTG
9111251 TGTGACTTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.26, C:0.10, G:0.30, T:0.34
Consensus pattern (23 bp):
ATTGCATGACTAGTTAGTAAGGC
Found at i:9111255 original size:23 final size:23
Alignment explanation
Indices: 9111213--9111257 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
9111203 TGCATGATTG
9111213 GTTAGTAAGGCATTGCGTGACTA
1 GTTAGTAAGGCATTGCGTGACTA
*
9111236 GTTAGTAAGGCATTGTGTGACT
1 GTTAGTAAGGCATTGCGTGACT
9111258 TAGGCGTTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.24, C:0.11, G:0.31, T:0.33
Consensus pattern (23 bp):
GTTAGTAAGGCATTGCGTGACTA
Found at i:9111301 original size:22 final size:22
Alignment explanation
Indices: 9111271--9111353 Score: 96
Period size: 22 Copynumber: 3.8 Consensus size: 22
9111261 GCGTTGTTTC
* * *
9111271 AAAATCAATCATACAATGTCTA
1 AAAACCAATCACACAATGCCTA
*
9111293 AAAACCAATCACGCAATGCCT-
1 AAAACCAATCACACAATGCCTA
* *
9111314 AAAACCAGTCACACAATACCTA
1 AAAACCAATCACACAATGCCTA
*
9111336 AAAACCAATCACGCAATG
1 AAAACCAATCACACAATG
9111354 ATTAAGTCAC
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
21 18 0.36
22 32 0.64
ACGTcount: A:0.48, C:0.28, G:0.07, T:0.17
Consensus pattern (22 bp):
AAAACCAATCACACAATGCCTA
Found at i:9111319 original size:21 final size:22
Alignment explanation
Indices: 9111284--9111353 Score: 97
Period size: 22 Copynumber: 3.2 Consensus size: 22
9111274 ATCAATCATA
*
9111284 CAATGTCTAAAAACCAATCACG
1 CAATGCCTAAAAACCAATCACG
* *
9111306 CAATGCCT-AAAACCAGTCACA
1 CAATGCCTAAAAACCAATCACG
*
9111327 CAATACCTAAAAACCAATCACG
1 CAATGCCTAAAAACCAATCACG
9111349 CAATG
1 CAATG
9111354 ATTAAGTCAC
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
21 18 0.45
22 22 0.55
ACGTcount: A:0.46, C:0.30, G:0.09, T:0.16
Consensus pattern (22 bp):
CAATGCCTAAAAACCAATCACG
Found at i:9113136 original size:3 final size:3
Alignment explanation
Indices: 9113128--9113173 Score: 74
Period size: 3 Copynumber: 15.3 Consensus size: 3
9113118 AAACATTCCA
* *
9113128 TAT TAT TAT TAT TAT TAT TAC TAT TAT TAT AAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
9113174 TTGTTTCAGA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:9116610 original size:40 final size:41
Alignment explanation
Indices: 9116562--9116660 Score: 155
Period size: 40 Copynumber: 2.4 Consensus size: 41
9116552 AAATATCTTA
* *
9116562 AACATAAACTTAAATAACTATACACAAATATCCAAAT-AAC
1 AACATAAACTTAAATAACTAAACACAAAGATCCAAATAAAC
* *
9116602 AATATAAACTTAAATAACTAAACACAACGATCCAAATAAAC
1 AACATAAACTTAAATAACTAAACACAAAGATCCAAATAAAC
9116643 AACATAAACTTAAATAAC
1 AACATAAACTTAAATAAC
9116661 CAAATATTAT
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
40 33 0.62
41 20 0.38
ACGTcount: A:0.59, C:0.19, G:0.01, T:0.21
Consensus pattern (41 bp):
AACATAAACTTAAATAACTAAACACAAAGATCCAAATAAAC
Found at i:9128181 original size:32 final size:32
Alignment explanation
Indices: 9128136--9128200 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
9128126 TGTAATCAGC
9128136 AATTCCCTAAAGATTTATTGAGCAAAAAAAAA
1 AATTCCCTAAAGATTTATTGAGCAAAAAAAAA
* *
9128168 AATTCCCTTAAGATTTATTGAGCAAAAACAAA
1 AATTCCCTAAAGATTTATTGAGCAAAAAAAAA
9128200 A
1 A
9128201 TCCATTAAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.51, C:0.14, G:0.09, T:0.26
Consensus pattern (32 bp):
AATTCCCTAAAGATTTATTGAGCAAAAAAAAA
Found at i:9128209 original size:30 final size:32
Alignment explanation
Indices: 9128136--9128211 Score: 102
Period size: 32 Copynumber: 2.4 Consensus size: 32
9128126 TGTAATCAGC
* *
9128136 AATTCCCTAAAGATTTATTGAGCAAAAAAAAA
1 AATTCCATTAAGATTTATTGAGCAAAAAAAAA
* *
9128168 AATTCCCTTAAGATTTATTGAGC-AAAAACAA
1 AATTCCATTAAGATTTATTGAGCAAAAAAAAA
9128199 AA-TCCATTAAGAT
1 AATTCCATTAAGAT
9128212 AGCACAAAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
30 10 0.24
31 9 0.22
32 22 0.54
ACGTcount: A:0.49, C:0.14, G:0.09, T:0.28
Consensus pattern (32 bp):
AATTCCATTAAGATTTATTGAGCAAAAAAAAA
Found at i:9131541 original size:16 final size:17
Alignment explanation
Indices: 9131498--9131541 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
9131488 AGATATGAAA
*
9131498 CTGATTTTGTATGATAT
1 CTGATTTTGTATAATAT
* *
9131515 TTGACTTTGTATAATAT
1 CTGATTTTGTATAATAT
9131532 CT-ATTTTGTA
1 CTGATTTTGTA
9131542 ACAAGTGAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
16 7 0.32
17 15 0.68
ACGTcount: A:0.25, C:0.07, G:0.14, T:0.55
Consensus pattern (17 bp):
CTGATTTTGTATAATAT
Found at i:9131823 original size:27 final size:27
Alignment explanation
Indices: 9131770--9131833 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 27
9131760 TAATAATAAG
*
9131770 AATACCTTTACCTACTAGAAGTGGATA
1 AATACCTTTACCTACTAGAAGTAGATA
* * *
9131797 GATACCTTTACC-CCTCAGGAGTAGATA
1 AATACCTTTACCTACT-AGAAGTAGATA
*
9131824 AATAACTTTA
1 AATACCTTTA
9131834 ATCACTAGAA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
26 2 0.07
27 28 0.93
ACGTcount: A:0.36, C:0.20, G:0.14, T:0.30
Consensus pattern (27 bp):
AATACCTTTACCTACTAGAAGTAGATA
Found at i:9135995 original size:19 final size:20
Alignment explanation
Indices: 9135971--9136013 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
9135961 TCAAAGATTA
*
9135971 CTTTTGCTTCTTTTCTT-TT
1 CTTTTGCTTCTTCTCTTCTT
*
9135990 CTTTTGTTTCTTCTCTTCTT
1 CTTTTGCTTCTTCTCTTCTT
9136010 CTTT
1 CTTT
9136014 CTAGGCCTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.00, C:0.23, G:0.05, T:0.72
Consensus pattern (20 bp):
CTTTTGCTTCTTCTCTTCTT
Found at i:9136338 original size:20 final size:20
Alignment explanation
Indices: 9136300--9136338 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
9136290 GAATTTTGAG
*
9136300 CAATTGAATTTGCTATTTGC
1 CAATTCAATTTGCTATTTGC
9136320 CAATTCAATGTTGCT-TTTG
1 CAATTCAAT-TTGCTATTTG
9136339 TTGCACTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.23, C:0.15, G:0.15, T:0.46
Consensus pattern (20 bp):
CAATTCAATTTGCTATTTGC
Found at i:9140559 original size:3 final size:3
Alignment explanation
Indices: 9140553--9140582 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
9140543 TAGAGAGTAG
*
9140553 TAA TAA TAA TAA TAA TAA TAA CAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
9140583 GGAGGAGGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:9145364 original size:2 final size:2
Alignment explanation
Indices: 9145359--9145385 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
9145349 GGAAAAAAAA
9145359 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A
9145386 ATATTCAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:9160872 original size:2 final size:2
Alignment explanation
Indices: 9160865--9160980 Score: 123
Period size: 2 Copynumber: 58.5 Consensus size: 2
9160855 TACATGGGAT
* **
9160865 TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA TA TA TA TA NA GGG
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA
* * *
9160907 T- TA CCA TG GA TA TA TA TA TA TA TA TA TA TA TA TA TA TA GTA -A
1 TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA
9160949 TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
9160981 CTTGCTGTTT
Statistics
Matches: 97, Mismatches: 10, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
1 4 0.04
2 90 0.93
3 3 0.03
ACGTcount: A:0.46, C:0.02, G:0.05, T:0.47
Consensus pattern (2 bp):
TA
Found at i:9165694 original size:2 final size:2
Alignment explanation
Indices: 9165687--9165720 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
9165677 TCAAATCATG
9165687 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
9165721 ATACAAATGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:9168124 original size:23 final size:23
Alignment explanation
Indices: 9168097--9168181 Score: 134
Period size: 23 Copynumber: 3.7 Consensus size: 23
9168087 AGCAATGTCT
9168097 AAGTCACACAATGCCTTACTAAC
1 AAGTCACACAATGCCTTACTAAC
* *
9168120 TAGTCACACAATACCTTACTAAC
1 AAGTCACACAATGCCTTACTAAC
9168143 AAGTCACACAATGCCTTACTAAC
1 AAGTCACACAATGCCTTACTAAC
**
9168166 AAGTCATGCAATGCCT
1 AAGTCACACAATGCCT
9168182 ATCAACTAGT
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 56 1.00
ACGTcount: A:0.38, C:0.29, G:0.09, T:0.24
Consensus pattern (23 bp):
AAGTCACACAATGCCTTACTAAC
Found at i:9168214 original size:26 final size:25
Alignment explanation
Indices: 9168098--9168445 Score: 231
Period size: 26 Copynumber: 14.6 Consensus size: 25
9168088 GCAATGTCTA
* *
9168098 AGTCACACAATGCCTTA-C-TAACT
1 AGTCACGCAATGCCTTATCAAAACT
* * * *
9168121 AGTCACACAATACCTTA-C-TAACA
1 AGTCACGCAATGCCTTATCAAAACT
* * *
9168144 AGTCACACAATGCCTTA-C-TAACA
1 AGTCACGCAATGCCTTATCAAAACT
*
9168167 AGTCATGCAATGCC-TATC--AACT
1 AGTCACGCAATGCCTTATCAAAACT
*
9168189 AGTCATGCAATGCCTTATCAGAAACT
1 AGTCACGCAATGCCTTATCA-AAACT
*
9168215 AGTCATGCAATGCCTTATCAAAAACT
1 AGTCACGCAATGCCTTATC-AAAACT
**
9168241 AGTCACGCAATGCC----CAAAGTT
1 AGTCACGCAATGCCTTATCAAAACT
9168262 AGTCACGCAATGCC-TATC--AACT
1 AGTCACGCAATGCCTTATCAAAACT
* * *
9168284 AATCTCGTAATGCCTTATCAGAAACT
1 AGTCACGCAATGCCTTATCA-AAACT
*
9168310 AGTCACGCAATACCTTATCAAAAACT
1 AGTCACGCAATGCCTTATC-AAAACT
* *
9168336 AGTCACGCAATACC----C-AAATT
1 AGTCACGCAATGCCTTATCAAAACT
* *
9168356 CAGTCACGTAATGCC-TAT--TAACT
1 -AGTCACGCAATGCCTTATCAAAACT
*
9168379 AGTCATGCAATGCCTTATCAGAAACT
1 AGTCACGCAATGCCTTATCA-AAACT
*
9168405 AGTCACGCAAATGCCTTATCAAAAAT
1 AGTCACGC-AATGCCTTATCAAAACT
*
9168431 CAGTCACGTAATGCC
1 -AGTCACGCAATGCC
9168446 CAAATTCAGT
Statistics
Matches: 272, Mismatches: 29, Indels: 45
0.79 0.08 0.13
Matches are distributed among these distances:
20 4 0.01
21 30 0.11
22 46 0.17
23 70 0.26
24 1 0.00
26 100 0.37
27 21 0.08
ACGTcount: A:0.36, C:0.27, G:0.12, T:0.25
Consensus pattern (25 bp):
AGTCACGCAATGCCTTATCAAAACT
Found at i:9168277 original size:95 final size:95
Alignment explanation
Indices: 9168167--9168463 Score: 447
Period size: 95 Copynumber: 3.1 Consensus size: 95
9168157 CTTACTAACA
* *
9168167 AGTCATGCAATGCCTATCAACTAGTCATGCAATGCCTTATCAGAAACTAGTCATGCAATGCCTTA
1 AGTCACGCAATGCCTATCAACTAGTCATGCAATGCCTTATCAGAAACTAGTCACGCAATGCCTTA
9168232 TCAAAAACTAGTCACGCAATGCCCAAAGTT-
66 TCAAAAACTAGTCACGCAATGCCCAAA-TTC
* * *
9168262 AGTCACGCAATGCCTATCAACTAATC-TCGTAATGCCTTATCAGAAACTAGTCACGCAATACCTT
1 AGTCACGCAATGCCTATCAACTAGTCAT-GCAATGCCTTATCAGAAACTAGTCACGCAATGCCTT
*
9168326 ATCAAAAACTAGTCACGCAATACCCAAATTC
65 ATCAAAAACTAGTCACGCAATGCCCAAATTC
* *
9168357 AGTCACGTAATGCCTATTAACTAGTCATGCAATGCCTTATCAGAAACTAGTCACGCAAATGCCTT
1 AGTCACGCAATGCCTATCAACTAGTCATGCAATGCCTTATCAGAAACTAGTCACGC-AATGCCTT
*
9168422 ATCAAAAA-TCAGTCACGTAATGCCCAAATTC
65 ATCAAAAACT-AGTCACGCAATGCCCAAATTC
*
9168453 AGTCATGCAAT
1 AGTCACGCAAT
9168464 ATCTAAAGTC
Statistics
Matches: 182, Mismatches: 15, Indels: 9
0.88 0.07 0.04
Matches are distributed among these distances:
94 3 0.02
95 135 0.74
96 44 0.24
ACGTcount: A:0.36, C:0.26, G:0.13, T:0.25
Consensus pattern (95 bp):
AGTCACGCAATGCCTATCAACTAGTCATGCAATGCCTTATCAGAAACTAGTCACGCAATGCCTTA
TCAAAAACTAGTCACGCAATGCCCAAATTC
Found at i:9168490 original size:21 final size:21
Alignment explanation
Indices: 9168430--9168491 Score: 70
Period size: 21 Copynumber: 3.0 Consensus size: 21
9168420 TTATCAAAAA
* * *
9168430 TCAGTCACGTAATGCCCAAAT
1 TCAGTCACGCAATGCCTAAAG
* **
9168451 TCAGTCATGCAATATCTAAAG
1 TCAGTCACGCAATGCCTAAAG
9168472 TCAGTCACGCAATGCCTAAA
1 TCAGTCACGCAATGCCTAAA
9168492 AACTAGTCAC
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.24
Consensus pattern (21 bp):
TCAGTCACGCAATGCCTAAAG
Found at i:9172328 original size:21 final size:20
Alignment explanation
Indices: 9172296--9172339 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 20
9172286 TAACTATTCT
9172296 TAAAGTAAATTAAA-TCAAAA
1 TAAAGTAAATTAAACT-AAAA
9172316 TAAAGTAAAATTAAACTAAAA
1 TAAAGT-AAATTAAACTAAAA
9172337 TAA
1 TAA
9172340 CTTCGATTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 6 0.27
21 15 0.68
22 1 0.05
ACGTcount: A:0.66, C:0.05, G:0.05, T:0.25
Consensus pattern (20 bp):
TAAAGTAAATTAAACTAAAA
Found at i:9177831 original size:20 final size:20
Alignment explanation
Indices: 9177806--9177851 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
9177796 TTTTAGCCCC
* *
9177806 ATTTGACTTATTGGAGTATA
1 ATTTGACTAATTGAAGTATA
* *
9177826 ATTTGAGTAATTGAAGTATG
1 ATTTGACTAATTGAAGTATA
9177846 ATTTGA
1 ATTTGA
9177852 GGTTTAGAAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.33, C:0.02, G:0.22, T:0.43
Consensus pattern (20 bp):
ATTTGACTAATTGAAGTATA
Found at i:9177852 original size:20 final size:20
Alignment explanation
Indices: 9177815--9177852 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
9177805 CATTTGACTT
*
9177815 ATTGGAGTATAATTTGAGTA
1 ATTGAAGTATAATTTGAGTA
*
9177835 ATTGAAGTATGATTTGAG
1 ATTGAAGTATAATTTGAG
9177853 GTTTAGAAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.00, G:0.26, T:0.39
Consensus pattern (20 bp):
ATTGAAGTATAATTTGAGTA
Found at i:9184584 original size:13 final size:13
Alignment explanation
Indices: 9184566--9184591 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
9184556 AGTCACTAGG
9184566 GAAAAAAAACAAA
1 GAAAAAAAACAAA
9184579 GAAAAAAAACAAA
1 GAAAAAAAACAAA
9184592 ATTGAGCAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.08, G:0.08, T:0.00
Consensus pattern (13 bp):
GAAAAAAAACAAA
Found at i:9188098 original size:20 final size:20
Alignment explanation
Indices: 9188081--9188118 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
9188071 CCTCAAATCT
9188081 TACTCCAATAAGTCAAATTA
1 TACTCCAATAAGTCAAATTA
9188101 TACTCCAATAAGTCAAAT
1 TACTCCAATAAGTCAAAT
9188119 GGGGCCAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.45, C:0.21, G:0.05, T:0.29
Consensus pattern (20 bp):
TACTCCAATAAGTCAAATTA
Found at i:9191555 original size:11 final size:11
Alignment explanation
Indices: 9191523--9191567 Score: 54
Period size: 11 Copynumber: 4.1 Consensus size: 11
9191513 CAATTATCTA
9191523 TTTTATTATTT
1 TTTTATTATTT
* *
9191534 TTTTGTCATTT
1 TTTTATTATTT
9191545 TTTTATTATTT
1 TTTTATTATTT
**
9191556 AATTATTATTT
1 TTTTATTATTT
9191567 T
1 T
9191568 CATTTTTGTC
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (11 bp):
TTTTATTATTT
Found at i:9191555 original size:30 final size:29
Alignment explanation
Indices: 9191516--9191574 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
9191506 GCTAATGCAA
* *
9191516 TTATCTATTTTATTATTTTTTTGTCATTTTT
1 TTATCTATTTAATTA-TTATTT-TCATTTTT
9191547 TTAT-TATTTAATTATTATTTTCATTTTT
1 TTATCTATTTAATTATTATTTTCATTTTT
9191575 GTCATAATCC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 8 0.31
29 5 0.19
30 9 0.35
31 4 0.15
ACGTcount: A:0.20, C:0.05, G:0.02, T:0.73
Consensus pattern (29 bp):
TTATCTATTTAATTATTATTTTCATTTTT
Found at i:9191909 original size:38 final size:38
Alignment explanation
Indices: 9191776--9192377 Score: 685
Period size: 38 Copynumber: 15.8 Consensus size: 38
9191766 TTTTTTTTTT
* * *
9191776 AATGAGACTCCTCAAAGCTGAGGCGACGAAAC-TTTAAA
1 AATGA-ACTCCTCAAAACTGAGGCAATGAAACTTTTAAA
* * * * **
9191814 AATGAACTCCTTAAAATTGAGGCTACGAAACCTTTTTTTTTTTA
1 AATGAACTCCTCAAAACTGAGGCAATGAAA-C-----TTTTAAA
* * * *
9191858 AATGAAACTCCTCAAAGCTAAGGTAATGAAACTTCTAAA
1 AATG-AACTCCTCAAAACTGAGGCAATGAAACTTTTAAA
* * *
9191897 AATGAACTCCTCAAAGCTAAGGCAACGAAACTTTTAAA
1 AATGAACTCCTCAAAACTGAGGCAATGAAACTTTTAAA
** * * *
9191935 AATGAACTCCTCAAGGCTGAGGTAACGAAACTTCT-AA
1 AATGAACTCCTCAAAACTGAGGCAATGAAACTTTTAAA
* * * *
9191972 AATAAACTCTTCAAAA-TGAGGCAATGAGATTTTTAAA
1 AATGAACTCCTCAAAACTGAGGCAATGAAACTTTTAAA
*
9192009 AATGAACTCCTCAAAACTGAGGCAATGAAACTTTTTAA
1 AATGAACTCCTCAAAACTGAGGCAATGAAACTTTTAAA
*
9192047 AATGAACTCCTCAAAACTGAGGCAATGACACTTTTAAA
1 AATGAACTCCTCAAAACTGAGGCAATGAAACTTTTAAA
* * *
9192085 AATGAACTCCTCAAAGCTGAGGCAACGAAACTTCT-AA
1 AATGAACTCCTCAAAACTGAGGCAATGAAACTTTTAAA
* * *
9192122 AATAAACTCCTCAAAAATGAGGCAATGAGACTTTTAAA
1 AATGAACTCCTCAAAACTGAGGCAATGAAACTTTTAAA
* * *
9192160 AATGAACTCTTCAAAACTGAGGCAACGAAACTTTAAAA
1 AATGAACTCCTCAAAACTGAGGCAATGAAACTTTTAAA
**
9192198 AATGAACTCCTCAAAACTGAGGCAACAAAACTTTTAAA
1 AATGAACTCCTCAAAACTGAGGCAATGAAACTTTTAAA
* *
9192236 AATAAACTCCTCAAAACTGAGGCAATGACACTTTTAAA
1 AATGAACTCCTCAAAACTGAGGCAATGAAACTTTTAAA
*
9192274 AATGAACTTCTCAAAACTGAGGCAATG-AACTTTT-AA
1 AATGAACTCCTCAAAACTGAGGCAATGAAACTTTTAAA
* * *
9192310 AATAAACTCCTCAAAAATGAGGCAATGAGACTTTTAAA
1 AATGAACTCCTCAAAACTGAGGCAATGAAACTTTTAAA
*
9192348 AATGAACTCCTCAAAACTGAGGCAACGAAA
1 AATGAACTCCTCAAAACTGAGGCAATGAAA
9192378 NGGTTAGTTT
Statistics
Matches: 478, Mismatches: 73, Indels: 26
0.83 0.13 0.05
Matches are distributed among these distances:
36 39 0.08
37 94 0.20
38 309 0.65
39 8 0.02
44 9 0.02
45 19 0.04
ACGTcount: A:0.43, C:0.19, G:0.14, T:0.24
Consensus pattern (38 bp):
AATGAACTCCTCAAAACTGAGGCAATGAAACTTTTAAA
Found at i:9192061 original size:150 final size:150
Alignment explanation
Indices: 9191857--9192377 Score: 742
Period size: 150 Copynumber: 3.5 Consensus size: 150
9191847 TTTTTTTTTT
* * * * * *
9191857 AAATGAAACTCCTCAAAGCTAAGGTAATGAAACTTCTAAAAATGAACTCCTCAAAGCTAAGGCAA
1 AAATG-AACTCCTCAAAACTGAGGCAATGAAACTTTTAAAAATGAACTCCTCAAAACTGAGGCAA
* *
9191922 CGAAACTTTTAAAAATGAACTCCTCAAGGCTGAGGTAACGAAACTTCTAAAATAAACTCTTCAAA
65 CGAAACTTTTAAAAATGAACTCCTCAAAGCTGAGGCAACGAAACTTCTAAAATAAACTCTTCAAA
*
9191987 ATGAGGCAATGAGATTTTTAA
130 ATGAGGCAATGAGACTTTTAA
* *
9192008 AAATGAACTCCTCAAAACTGAGGCAATGAAACTTTTTAAAATGAACTCCTCAAAACTGAGGCAAT
1 AAATGAACTCCTCAAAACTGAGGCAATGAAACTTTTAAAAATGAACTCCTCAAAACTGAGGCAAC
* *
9192073 GACACTTTTAAAAATGAACTCCTCAAAGCTGAGGCAACGAAACTTCTAAAATAAACTCCTCAAAA
66 GAAACTTTTAAAAATGAACTCCTCAAAGCTGAGGCAACGAAACTTCTAAAATAAACTCTTC-AAA
9192138 ATGAGGCAATGAGACTTTTAA
130 ATGAGGCAATGAGACTTTTAA
* * *
9192159 AAATGAACTCTTCAAAACTGAGGCAACGAAACTTTAAAAAATGAACTCCTCAAAACTGAGGCAAC
1 AAATGAACTCCTCAAAACTGAGGCAATGAAACTTTTAAAAATGAACTCCTCAAAACTGAGGCAAC
* * * * * * *
9192224 AAAACTTTTAAAAATAAACTCCTCAAAACTGAGGCAATGACACTTTTAAAAATGAACT-TCTCAA
66 GAAACTTTTAAAAATGAACTCCTCAAAGCTGAGGCAACGAAACTTCT-AAAATAAACTCT-TCAA
9192288 AACTGAGGCAATGA-ACTTTT-A
129 AA-TGAGGCAATGAGACTTTTAA
* * *
9192309 AAATAAACTCCTCAAAAATGAGGCAATGAGACTTTTAAAAATGAACTCCTCAAAACTGAGGCAAC
1 AAATGAACTCCTCAAAACTGAGGCAATGAAACTTTTAAAAATGAACTCCTCAAAACTGAGGCAAC
9192374 GAAA
66 GAAA
9192378 NGGTTAGTTT
Statistics
Matches: 332, Mismatches: 34, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
150 172 0.52
151 138 0.42
152 22 0.07
ACGTcount: A:0.45, C:0.19, G:0.14, T:0.23
Consensus pattern (150 bp):
AAATGAACTCCTCAAAACTGAGGCAATGAAACTTTTAAAAATGAACTCCTCAAAACTGAGGCAAC
GAAACTTTTAAAAATGAACTCCTCAAAGCTGAGGCAACGAAACTTCTAAAATAAACTCTTCAAAA
TGAGGCAATGAGACTTTTAA
Found at i:9192395 original size:1 final size:1
Alignment explanation
Indices: 9192389--9192461 Score: 56
Period size: 1 Copynumber: 73.0 Consensus size: 1
9192379 GGTTAGTTTA
* * * * * * * * * *
9192389 TTTTTTTTGTTTTTCTTATTTTTTGTTTTTTTTTGTTTTTGTTTTTGTTTTTTTGTTTTTCTGTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
9192454 TTTTTTTT
1 TTTTTTTT
9192462 GTTTAAATGA
Statistics
Matches: 52, Mismatches: 20, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
1 52 1.00
ACGTcount: A:0.01, C:0.03, G:0.10, T:0.86
Consensus pattern (1 bp):
T
Found at i:9192412 original size:16 final size:14
Alignment explanation
Indices: 9192389--9192458 Score: 77
Period size: 16 Copynumber: 4.6 Consensus size: 14
9192379 GGTTAGTTTA
9192389 TTTTTTTTGTTTTT
1 TTTTTTTTGTTTTT
9192403 CTTATTTTTTGTTTTTT
1 -TT-TTTTTTG-TTTTT
9192420 TTTGTTTTTGTTTTT
1 TTT-TTTTTGTTTTT
*
9192435 GTTTTTTTGTTTTT
1 TTTTTTTTGTTTTT
9192449 CTGTTTTTTT
1 -T-TTTTTTT
9192459 TTTGTTTAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 9
0.81 0.03 0.15
Matches are distributed among these distances:
14 11 0.23
15 10 0.21
16 22 0.46
17 5 0.10
ACGTcount: A:0.01, C:0.03, G:0.10, T:0.86
Consensus pattern (14 bp):
TTTTTTTTGTTTTT
Found at i:9192417 original size:6 final size:6
Alignment explanation
Indices: 9192392--9192465 Score: 64
Period size: 6 Copynumber: 12.5 Consensus size: 6
9192382 TAGTTTATTT
* * *
9192392 TTTTTG TTTTTC TTATTTT TTGTTTT TTTTTG TTTTTG TTTTTG TTTTT-
1 TTTTTG TTTTTG TT-TTTG TT-TTTG TTTTTG TTTTTG TTTTTG TTTTTG
* *
9192441 TTGTT- TTTCTG TTTTT- TTTTTG TTT
1 TTTTTG TTTTTG TTTTTG TTTTTG TTT
9192466 AAATGAAACT
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
5 12 0.21
6 34 0.60
7 11 0.19
ACGTcount: A:0.01, C:0.03, G:0.11, T:0.85
Consensus pattern (6 bp):
TTTTTG
Found at i:9192437 original size:38 final size:39
Alignment explanation
Indices: 9192392--9192465 Score: 116
Period size: 38 Copynumber: 1.9 Consensus size: 39
9192382 TAGTTTATTT
9192392 TTTTTGTTTTTCTTATTTTT-TG-TTTTTTTTTGTTTTTG
1 TTTTTGTTTTT-TTATTTTTCTGTTTTTTTTTTGTTTTTG
*
9192430 TTTTTGTTTTTTTGTTTTTCTGTTTTTTTTTTGTTT
1 TTTTTGTTTTTTTATTTTTCTGTTTTTTTTTTGTTT
9192466 AAATGAAACT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
37 7 0.21
38 13 0.39
39 13 0.39
ACGTcount: A:0.01, C:0.03, G:0.11, T:0.85
Consensus pattern (39 bp):
TTTTTGTTTTTTTATTTTTCTGTTTTTTTTTTGTTTTTG
Found at i:9192540 original size:38 final size:38
Alignment explanation
Indices: 9192466--9192693 Score: 266
Period size: 38 Copynumber: 6.1 Consensus size: 38
9192456 TTTTTTGTTT
* * *
9192466 AAATGAAACTCCTCAAAGCTGAGGCAA-CAAAATTTTAA
1 AAATG-AACTCCTCAAAACTGAGGCAATGAAACTTTTAA
* *
9192504 AAATGAACTCCTCAAAACTGAGGTAATGAGACTTTTAA
1 AAATGAACTCCTCAAAACTGAGGCAATGAAACTTTTAA
* * *
9192542 AAATGAACTCTTCAAAACTGAGGTAACGAAACTTTTAA
1 AAATGAACTCCTCAAAACTGAGGCAATGAAACTTTTAA
* * *
9192580 CAATGAACTCCTCAAAGCTGAGGCAATGACACTTTTAA
1 AAATGAACTCCTCAAAACTGAGGCAATGAAACTTTTAA
*
9192618 AAATGAACTCCTTAAAACTGAGGCAACT-AAA-TTTT-A
1 AAATGAACTCCTCAAAACTGAGGCAA-TGAAACTTTTAA
* * * *
9192654 AAATAAATTCCTCAAAACTGAGGGAATGAGACTTTTAA
1 AAATGAACTCCTCAAAACTGAGGCAATGAAACTTTTAA
9192692 AA
1 AA
9192694 GTCTTGAAAC
Statistics
Matches: 162, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
35 1 0.01
36 25 0.15
37 27 0.17
38 108 0.67
39 1 0.01
ACGTcount: A:0.44, C:0.17, G:0.14, T:0.25
Consensus pattern (38 bp):
AAATGAACTCCTCAAAACTGAGGCAATGAAACTTTTAA
Found at i:9192592 original size:76 final size:73
Alignment explanation
Indices: 9192466--9192693 Score: 296
Period size: 76 Copynumber: 3.0 Consensus size: 73
9192456 TTTTTTGTTT
* * *
9192466 AAATGAAACTCCTCAAAGCTGAGGCAACAAAATTTTAAAAATGAACTCCTCAAAACTGAGGTAAT
1 AAATG-AACTCTTCAAAACTGAGGCAAC-AAATTTT-AAAATGAACTCCTCAAAACTGAGGCAAT
9192531 GAGACTTTTAA
63 GAGACTTTTAA
* *
9192542 AAATGAACTCTTCAAAACTGAGGTAACGAAACTTTTAACAATGAACTCCTCAAAGCTGAGGCAAT
1 AAATGAACTCTTCAAAACTGAGGCAAC-AAA-TTTTAA-AATGAACTCCTCAAAACTGAGGCAAT
*
9192607 GACACTTTTAA
63 GAGACTTTTAA
* * *
9192618 AAATGAACTCCTT-AAAACTGAGGCAACTAAATTTTAAAATAAATTCCTCAAAACTGAGGGAATG
1 AAATGAACT-CTTCAAAACTGAGGCAAC-AAATTTTAAAATGAACTCCTCAAAACTGAGGCAATG
9192682 AGACTTTTAA
64 AGACTTTTAA
9192692 AA
1 AA
9192694 GTCTTGAAAC
Statistics
Matches: 135, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
74 34 0.25
75 30 0.22
76 68 0.50
77 3 0.02
ACGTcount: A:0.44, C:0.17, G:0.14, T:0.25
Consensus pattern (73 bp):
AAATGAACTCTTCAAAACTGAGGCAACAAATTTTAAAATGAACTCCTCAAAACTGAGGCAATGAG
ACTTTTAA
Found at i:9197225 original size:19 final size:19
Alignment explanation
Indices: 9197198--9197244 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
9197188 TACCAAGGAG
*
9197198 ATAAGATAAAATTTTCA-GA
1 ATAAAATAAAATTTT-ATGA
* *
9197217 ATAAAATAATATTTTATTA
1 ATAAAATAAAATTTTATGA
9197236 ATAAAATAA
1 ATAAAATAA
9197245 TATTAAAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 1 0.04
19 23 0.96
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.36
Consensus pattern (19 bp):
ATAAAATAAAATTTTATGA
Found at i:9197694 original size:20 final size:20
Alignment explanation
Indices: 9197649--9197686 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
9197639 TTTTGGCCCC
9197649 ATTTGACTTATTGGAGTATA
1 ATTTGACTTATTGGAGTATA
9197669 ATTTGACTTATTGGAGTA
1 ATTTGACTTATTGGAGTA
9197687 AGATTTGAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.29, C:0.05, G:0.21, T:0.45
Consensus pattern (20 bp):
ATTTGACTTATTGGAGTATA
Found at i:9198825 original size:13 final size:13
Alignment explanation
Indices: 9198807--9198831 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9198797 GAAGAAATTG
9198807 TGATTTTATAAAA
1 TGATTTTATAAAA
9198820 TGATTTTATAAA
1 TGATTTTATAAA
9198832 TTTTTTGGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:9211033 original size:11 final size:11
Alignment explanation
Indices: 9211011--9211075 Score: 62
Period size: 11 Copynumber: 5.9 Consensus size: 11
9211001 TGCTAATGCA
9211011 ATTATCTATTTT
1 ATTAT-TATTTT
9211023 ATTATTATTTT
1 ATTATTATTTT
* * *
9211034 TTTGTCATTTT
1 ATTATTATTTT
*
9211045 -TTATTATTTA
1 ATTATTATTTT
9211055 ATTATTATTTT
1 ATTATTATTTT
9211066 CATT-TTATTT
1 -ATTATTATTT
9211076 CATTCTTTAT
Statistics
Matches: 44, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
10 7 0.16
11 29 0.66
12 8 0.18
ACGTcount: A:0.23, C:0.05, G:0.02, T:0.71
Consensus pattern (11 bp):
ATTATTATTTT
Found at i:9211398 original size:4 final size:4
Alignment explanation
Indices: 9211378--9211423 Score: 55
Period size: 4 Copynumber: 12.2 Consensus size: 4
9211368 GTTGCTTTAG
9211378 ATTT -TTT A-TT A-TT ATTT ATTT ATTT ATTT ATTT -TTCT ATTT ATTT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATT-T ATTT ATTT
9211423 A
1 A
9211424 ATGTCGTGTA
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
3 11 0.29
4 25 0.66
5 2 0.05
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (4 bp):
ATTT
Found at i:9211534 original size:17 final size:18
Alignment explanation
Indices: 9211498--9211537 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
9211488 TTTTATCATC
*
9211498 ATTTTTTTATCTATTGTT
1 ATTTATTTATCTATTGTT
*
9211516 ATTTATTTAT-TATTTTT
1 ATTTATTTATCTATTGTT
9211533 ATTTA
1 ATTTA
9211538 GTGTTTTTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.72
Consensus pattern (18 bp):
ATTTATTTATCTATTGTT
Found at i:9211544 original size:13 final size:13
Alignment explanation
Indices: 9211501--9211545 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
9211491 TATCATCATT
*
9211501 TTTTTATCTATTG
1 TTTTTATTTATTG
*
9211514 TTATTTATTTATTA
1 TT-TTTATTTATTG
*
9211528 TTTTTATTTAGTG
1 TTTTTATTTATTG
9211541 TTTTT
1 TTTTT
9211546 GTACAGTAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
13 16 0.59
14 11 0.41
ACGTcount: A:0.18, C:0.02, G:0.07, T:0.73
Consensus pattern (13 bp):
TTTTTATTTATTG
Done.