Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39371879
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2227820 characters in sequence are not A, C, G, or T
File 33 of 103
Found at i:12400645 original size:2 final size:2
Alignment explanation
Indices: 12400638--12400662 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
12400628 ATTATGTGAT
12400638 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
12400663 GTATGATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:12404065 original size:42 final size:42
Alignment explanation
Indices: 12403967--12404065 Score: 144
Period size: 42 Copynumber: 2.4 Consensus size: 42
12403957 GTGATAATTA
*
12403967 TGACCCAGCCATGTGCGGTGTAAGAGTGCACATGAGCTATGC
1 TGACCCAGCCATGTGCGATGTAAGAGTGCACATGAGCTATGC
* * *
12404009 TGATCCAGCCATGTGCGATGTATGAGTGCACATGAGCTGTGC
1 TGACCCAGCCATGTGCGATGTAAGAGTGCACATGAGCTATGC
* *
12404051 TGACCCGGCTATGTG
1 TGACCCAGCCATGTG
12404066 TTGTGTGGTA
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.21, C:0.23, G:0.31, T:0.24
Consensus pattern (42 bp):
TGACCCAGCCATGTGCGATGTAAGAGTGCACATGAGCTATGC
Found at i:12413427 original size:40 final size:39
Alignment explanation
Indices: 12413383--12413461 Score: 122
Period size: 40 Copynumber: 2.0 Consensus size: 39
12413373 TTTCATGGTG
*
12413383 AATTCATGGCTGGTTAAAATAGGCATGGAGAGAGAATGA
1 AATTCATGGCTGGTCAAAATAGGCATGGAGAGAGAATGA
* *
12413422 NAATTCATGGCTGGTCAAAATGGGTATGGAGAGAGAATGA
1 -AATTCATGGCTGGTCAAAATAGGCATGGAGAGAGAATGA
12413462 TCTTGGATTG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.37, C:0.08, G:0.32, T:0.23
Consensus pattern (39 bp):
AATTCATGGCTGGTCAAAATAGGCATGGAGAGAGAATGA
Found at i:12420026 original size:26 final size:24
Alignment explanation
Indices: 12419992--12420053 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
12419982 GGCAACAAAT
12419992 ATGAGGAAAAGAAAGAAAATAAGAAA
1 ATGAGGAAAA-AAAGAAAA-AAGAAA
*
12420018 ATGAGGAAAAAAAGAAAAATGAAA
1 ATGAGGAAAAAAAGAAAAAAGAAA
* *
12420042 ATAAAGAAAAAA
1 ATGAGGAAAAAA
12420054 TACAAAGAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 15 0.45
25 8 0.24
26 10 0.30
ACGTcount: A:0.73, C:0.00, G:0.19, T:0.08
Consensus pattern (24 bp):
ATGAGGAAAAAAAGAAAAAAGAAA
Found at i:12420049 original size:16 final size:16
Alignment explanation
Indices: 12420006--12420052 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
12419996 GGAAAAGAAA
12420006 GAAAAT-AAG-AAAAT
1 GAAAATAAAGAAAAAT
*
12420020 GAGGAAAAAAAGAAAAAT
1 GA--AAATAAAGAAAAAT
12420038 GAAAATAAAGAAAAA
1 GAAAATAAAGAAAAA
12420053 ATACAAAGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
14 2 0.07
16 15 0.56
17 3 0.11
18 7 0.26
ACGTcount: A:0.74, C:0.00, G:0.17, T:0.09
Consensus pattern (16 bp):
GAAAATAAAGAAAAAT
Found at i:12420158 original size:24 final size:24
Alignment explanation
Indices: 12420109--12420159 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
12420099 ATTATTAAAT
** *
12420109 TATAAAAAATTCAAATAGAGAACA
1 TATAAAAAATAAAAATAGAAAACA
12420133 TATAAAAAATAAAAATA-AAAATCA
1 TATAAAAAATAAAAATAGAAAA-CA
12420157 TAT
1 TAT
12420160 CAATAATTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 3 0.13
24 20 0.87
ACGTcount: A:0.67, C:0.06, G:0.04, T:0.24
Consensus pattern (24 bp):
TATAAAAAATAAAAATAGAAAACA
Found at i:12422443 original size:90 final size:89
Alignment explanation
Indices: 12422279--12422471 Score: 239
Period size: 90 Copynumber: 2.1 Consensus size: 89
12422269 TCTAATCCTC
* * * *
12422279 AAGTTTTGGTATTATTTTGTTTTCACATTGTCAAGCTTCAAAAGGATTTCAATAATTAGGTTTTG
1 AAGTGTTGATATTATTTTGTTTTCACATTGCCAAGCTTCAAAAGGATTTCAATAATTAGGTTTTA
*
12422344 ATCTTTAGTTTTAGCAAATCAGGT
66 ATCTTTAGTTGTAGCAAATCAGGT
* * *
12422368 AAGTGTTGATATTATTTTGTTTTCATCATCT-CCAGGCTTTAAAAGGATTTCAATAGTT-GGTCT
1 AAGTGTTGATATTATTTTGTTTTCA-CAT-TGCCAAGCTTCAAAAGGATTTCAATAATTAGGT-T
12422431 TTAAT-TTCTAGTTGTAGCAAATCAGGT
63 TTAATCTT-TAGTTGTAGCAAATCAGGT
12422458 AAGTGACTTGATAT
1 AAGTG--TTGATAT
12422472 CTCTTTAGTG
Statistics
Matches: 90, Mismatches: 8, Indels: 9
0.84 0.07 0.08
Matches are distributed among these distances:
89 28 0.31
90 54 0.60
91 1 0.01
92 7 0.08
ACGTcount: A:0.28, C:0.11, G:0.18, T:0.44
Consensus pattern (89 bp):
AAGTGTTGATATTATTTTGTTTTCACATTGCCAAGCTTCAAAAGGATTTCAATAATTAGGTTTTA
ATCTTTAGTTGTAGCAAATCAGGT
Found at i:12422767 original size:59 final size:60
Alignment explanation
Indices: 12422650--12422768 Score: 161
Period size: 59 Copynumber: 2.0 Consensus size: 60
12422640 TAATAAAAAA
* **
12422650 TCATGAATCCGACCATGCCCTGAAGTAAAATGGAACATCATTTAACAATTATGGTCATGG
1 TCATGAATCCGACCATGCCCTGAAGTAAAATGCAACATCATTTAACAATTATAATCATGG
* * *
12422710 TCATGAATCC-ATCCATTCCCTGAAGT-GAATGCAACATCATTTAATAATTATAATCATGG
1 TCATGAATCCGA-CCATGCCCTGAAGTAAAATGCAACATCATTTAACAATTATAATCATGG
12422769 ACATAGAAGA
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
59 29 0.56
60 23 0.44
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.29
Consensus pattern (60 bp):
TCATGAATCCGACCATGCCCTGAAGTAAAATGCAACATCATTTAACAATTATAATCATGG
Found at i:12422858 original size:26 final size:26
Alignment explanation
Indices: 12422822--12422898 Score: 127
Period size: 26 Copynumber: 3.0 Consensus size: 26
12422812 AATTCTAAGA
* *
12422822 ATAATTTTACCACCAAAAGTGGATGG
1 ATAATTTTACCACCAGAAGTGGATAG
12422848 ATAATTTTACCACCAGAAGTGGATAG
1 ATAATTTTACCACCAGAAGTGGATAG
*
12422874 ATAATTTTACTACCAGAAGTGGATA
1 ATAATTTTACCACCAGAAGTGGATA
12422899 ACCCATCAGA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (26 bp):
ATAATTTTACCACCAGAAGTGGATAG
Found at i:12422910 original size:18 final size:18
Alignment explanation
Indices: 12422885--12422935 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
12422875 TAATTTTACT
12422885 ACCAGAAGTGGATAACCC
1 ACCAGAAGTGGATAACCC
* *
12422903 ATCAGAAGTGAATAACCC
1 ACCAGAAGTGGATAACCC
*
12422921 ACCAAGATGTGGATA
1 ACC-AGAAGTGGATA
12422936 GATATTTGTA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
18 18 0.67
19 9 0.33
ACGTcount: A:0.41, C:0.22, G:0.22, T:0.16
Consensus pattern (18 bp):
ACCAGAAGTGGATAACCC
Found at i:12422985 original size:28 final size:28
Alignment explanation
Indices: 12422915--12422995 Score: 81
Period size: 28 Copynumber: 2.9 Consensus size: 28
12422905 CAGAAGTGAA
* * * *
12422915 TAACCCACCAAGATGTGGATAGATATTTG
1 TAACCCACCAA-AAGTGAATAAATACTTG
* *
12422944 TAACCCACCAAAAGTTAATGAATACTTG
1 TAACCCACCAAAAGTGAATAAATACTTG
* *
12422972 TAACCCATCGAAAGTGAATAAATA
1 TAACCCACCAAAAGTGAATAAATA
12422996 ATGAAAAGAC
Statistics
Matches: 42, Mismatches: 10, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 31 0.74
29 11 0.26
ACGTcount: A:0.42, C:0.19, G:0.15, T:0.25
Consensus pattern (28 bp):
TAACCCACCAAAAGTGAATAAATACTTG
Found at i:12430822 original size:2 final size:2
Alignment explanation
Indices: 12430815--12430844 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
12430805 AGAACAAAAT
12430815 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
12430845 AATTTTAACC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:12437031 original size:18 final size:18
Alignment explanation
Indices: 12437004--12437038 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
12436994 ATTACTAGTC
* *
12437004 ATTAGCATAAACTAAAAT
1 ATTAGAATAAAATAAAAT
12437022 ATTAGAATAAAATAAAA
1 ATTAGAATAAAATAAAA
12437039 CATGATCTTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.63, C:0.06, G:0.06, T:0.26
Consensus pattern (18 bp):
ATTAGAATAAAATAAAAT
Found at i:12441601 original size:49 final size:49
Alignment explanation
Indices: 12441548--12441649 Score: 125
Period size: 49 Copynumber: 2.1 Consensus size: 49
12441538 GAGCTGTTCA
* * * * * *
12441548 TGGATGATTTTGGACAATGTTATGATGTTG-ATTATGTATGTTTCGTCCG
1 TGGATGATTCTAGACAATGATATGAAG-TGAAATATGTATGTTCCGTCCG
*
12441597 TGGATGGTTCTAGACAATGATATGAAGTGAAATATGTATGTTCCGTCCG
1 TGGATGATTCTAGACAATGATATGAAGTGAAATATGTATGTTCCGTCCG
12441646 TGGA
1 TGGA
12441650 GGAATTTCGG
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
48 2 0.04
49 43 0.96
ACGTcount: A:0.25, C:0.10, G:0.27, T:0.38
Consensus pattern (49 bp):
TGGATGATTCTAGACAATGATATGAAGTGAAATATGTATGTTCCGTCCG
Found at i:12441892 original size:81 final size:81
Alignment explanation
Indices: 12441707--12441945 Score: 252
Period size: 81 Copynumber: 3.0 Consensus size: 81
12441697 TGTGACTATG
* * * ** *
12441707 TATGATGCCGGCAGGGATGGTGGTAGGTAGTGATGGTGG-TTTGTCTTGCCTGCGATTCCTGCCT
1 TATGATGCCGGCAGGGATGGTGGTAAGTAGGGATGGTGGTTTTGTCTCGCCTTTGATTCCTGCTT
** * *
12441771 ACTGTGCGATGATGAT
66 GTTGTGTGATGATAAT
* * *
12441787 TATGATGCCGGCAGGGTTGGTGGTAAGTAGGGATGGTGGTTTTGTCTCGCCTTTGTTTCTTGCTT
1 TATGATGCCGGCAGGGATGGTGGTAAGTAGGGATGGTGGTTTTGTCTCGCCTTTGATTCCTGCTT
12441852 GTTGTGTGATGATAAT
66 GTTGTGTGATGATAAT
* * * * * *
12441868 TATGATGCCGACAAGGATGATGGTAA-AATGGGATGGAGGTTTTGTC-C-CACTTGTGATTCCCG
1 TATGATGCCGGCAGGGATGGTGGTAAGTA-GGGATGGTGGTTTTGTCTCGC-CTT-TGATTCCTG
12441930 CTTGTTGTGTGATGAT
63 CTTGTTGTGTGATGAT
12441946 GACTATGTCC
Statistics
Matches: 133, Mismatches: 22, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
79 1 0.01
80 41 0.31
81 91 0.68
ACGTcount: A:0.17, C:0.14, G:0.34, T:0.36
Consensus pattern (81 bp):
TATGATGCCGGCAGGGATGGTGGTAAGTAGGGATGGTGGTTTTGTCTCGCCTTTGATTCCTGCTT
GTTGTGTGATGATAAT
Found at i:12444109 original size:38 final size:38
Alignment explanation
Indices: 12444066--12444175 Score: 127
Period size: 38 Copynumber: 2.9 Consensus size: 38
12444056 ATAGTGCCCG
* *
12444066 TGTGCACGATGTGGGGGGATGTACATGATGGC-ACTGAT
1 TGTGCACGATGTGGGGGGATGTACATGACGCCGACT-AT
*
12444104 TGTGCACGATATGGGGGGATGCATACGATGACGCCGACTAT
1 TGTGCACGATGTGGGGGGATG--TAC-ATGACGCCGACTAT
*
12444145 T-TGCACGATGTGGGGAGATGTACATGA-GCCG
1 TGTGCACGATGTGGGGGGATGTACATGACGCCG
12444176 GGTGTGATTA
Statistics
Matches: 63, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
36 4 0.06
37 4 0.06
38 23 0.37
40 20 0.32
41 9 0.14
42 3 0.05
ACGTcount: A:0.23, C:0.16, G:0.37, T:0.24
Consensus pattern (38 bp):
TGTGCACGATGTGGGGGGATGTACATGACGCCGACTAT
Found at i:12450631 original size:20 final size:20
Alignment explanation
Indices: 12450606--12450646 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
12450596 TGACTTGTCT
12450606 TATATG-TATACATACTATGA
1 TATATGATATACATAC-ATGA
*
12450626 TATATGATATGCATACATGA
1 TATATGATATACATACATGA
12450646 T
1 T
12450647 TAGAGGATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (20 bp):
TATATGATATACATACATGA
Found at i:12455254 original size:21 final size:20
Alignment explanation
Indices: 12455219--12455259 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
12455209 TTCAGCCAGC
12455219 CATGAATTCACCAT-GAAAA
1 CATGAATTCACCATGGAAAA
12455238 CATGAAATTCAACCATGGAAAA
1 CATG-AATTC-ACCATGGAAAA
12455260 TAAGGAGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 5 0.26
21 5 0.26
22 5 0.26
ACGTcount: A:0.49, C:0.20, G:0.12, T:0.20
Consensus pattern (20 bp):
CATGAATTCACCATGGAAAA
Found at i:12455346 original size:22 final size:24
Alignment explanation
Indices: 12455321--12455367 Score: 64
Period size: 22 Copynumber: 2.0 Consensus size: 24
12455311 TACCTTTTGT
12455321 CACTTGTTTC-CTTG-AATT-TTCA
1 CACTT-TTTCTCTTGAAATTCTTCA
12455343 CACTTTTTCTCTTGAAATTCTTCA
1 CACTTTTTCTCTTGAAATTCTTCA
12455367 C
1 C
12455368 CTAGGGTTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 4 0.18
22 9 0.41
23 4 0.18
24 5 0.23
ACGTcount: A:0.19, C:0.26, G:0.06, T:0.49
Consensus pattern (24 bp):
CACTTTTTCTCTTGAAATTCTTCA
Found at i:12463224 original size:21 final size:20
Alignment explanation
Indices: 12463189--12463229 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
12463179 TTCAGCCAGC
12463189 CATGAATTCACCAT-GAAAA
1 CATGAATTCACCATGGAAAA
12463208 CATGAAATTCAACCATGGAAAA
1 CATG-AATTC-ACCATGGAAAA
12463230 TAATGAGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 5 0.26
21 5 0.26
22 5 0.26
ACGTcount: A:0.49, C:0.20, G:0.12, T:0.20
Consensus pattern (20 bp):
CATGAATTCACCATGGAAAA
Found at i:12463316 original size:22 final size:24
Alignment explanation
Indices: 12463291--12463337 Score: 64
Period size: 22 Copynumber: 2.0 Consensus size: 24
12463281 TACCTTTTGT
12463291 CACTTGTTT-CCTTG-AATT-TTCA
1 CACTT-TTTCCCTTGAAATTCTTCA
12463313 CACTTTTTCCCTTGAAATTCTTCA
1 CACTTTTTCCCTTGAAATTCTTCA
12463337 C
1 C
12463338 CTAGGGTTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 3 0.14
22 10 0.45
23 4 0.18
24 5 0.23
ACGTcount: A:0.19, C:0.28, G:0.06, T:0.47
Consensus pattern (24 bp):
CACTTTTTCCCTTGAAATTCTTCA
Found at i:12470744 original size:43 final size:43
Alignment explanation
Indices: 12470656--12470774 Score: 123
Period size: 43 Copynumber: 2.8 Consensus size: 43
12470646 GTAATGACAT
* **
12470656 TGACTCGGCTATGTGCGAGTAGGGAGTGCGCATAAGTCGAGGA
1 TGACTCGGCTATGTGCGAGTAGAGAGTGCGCATAACCCGAGGA
* *
12470699 TGACTTGGTTATGTGCGAGTAGAGAGTGCGCATAACCCG-GTGA
1 TGACTCGGCTATGTGCGAGTAGAGAGTGCGCATAACCCGAG-GA
* * * ** *
12470742 TGACCCAGCCATGTGTAAGTAGGGAGTGCGCAT
1 TGACTCGGCTATGTGCGAGTAGAGAGTGCGCAT
12470775 GAGCTGGTGA
Statistics
Matches: 62, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
42 1 0.02
43 61 0.98
ACGTcount: A:0.24, C:0.18, G:0.36, T:0.23
Consensus pattern (43 bp):
TGACTCGGCTATGTGCGAGTAGAGAGTGCGCATAACCCGAGGA
Found at i:12471239 original size:60 final size:60
Alignment explanation
Indices: 12471144--12471274 Score: 174
Period size: 60 Copynumber: 2.2 Consensus size: 60
12471134 CTGCAGCTTA
* *** * **
12471144 TCGCTGCAGTGAAATTCATTCTCGCTGCTGTGAGAAACTTAT-TGTTTCTGGGTTGTAATT
1 TCGCTGCAGCGAAATTCATTCTCGCTGCAACGAGAAACTT-TCTATTTCTGGGTTACAATT
12471204 TCGCTGCAGCGAAATTCATTCTCGCTGCAACGAGAAACTTTCTATTTCTGGGTTACAATT
1 TCGCTGCAGCGAAATTCATTCTCGCTGCAACGAGAAACTTTCTATTTCTGGGTTACAATT
*
12471264 TCGTTGCAGCG
1 TCGCTGCAGCG
12471275 GAAAACCTTC
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
59 1 0.02
60 61 0.98
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.36
Consensus pattern (60 bp):
TCGCTGCAGCGAAATTCATTCTCGCTGCAACGAGAAACTTTCTATTTCTGGGTTACAATT
Found at i:12472739 original size:11 final size:11
Alignment explanation
Indices: 12472723--12472750 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
12472713 CACTGTAAAT
12472723 TTTAAAACAAC
1 TTTAAAACAAC
12472734 TTTAAAACAAC
1 TTTAAAACAAC
12472745 TTTAAA
1 TTTAAA
12472751 CCCAAAAGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.54, C:0.14, G:0.00, T:0.32
Consensus pattern (11 bp):
TTTAAAACAAC
Found at i:12482665 original size:21 final size:20
Alignment explanation
Indices: 12482641--12482686 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
12482631 TCAATGATAC
*
12482641 GCAAGCAAGTCAAATATGGTA
1 GCAAG-AAGTCAAATAAGGTA
*
12482662 GCAAAGAAGTGAAATAAGGTA
1 GC-AAGAAGTCAAATAAGGTA
12482683 GCAA
1 GCAA
12482687 TTGGACAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 2 0.09
21 17 0.77
22 3 0.14
ACGTcount: A:0.48, C:0.11, G:0.26, T:0.15
Consensus pattern (20 bp):
GCAAGAAGTCAAATAAGGTA
Found at i:12483064 original size:3 final size:3
Alignment explanation
Indices: 12483056--12483118 Score: 53
Period size: 3 Copynumber: 21.7 Consensus size: 3
12483046 TACGTATACC
* * *
12483056 CAT CAT CAT CAT GCA- CAC CAT C-C CAT CAT CAT CAT ACA- CAC CAT
1 CAT CAT CAT CAT -CAT CAT CAT CAT CAT CAT CAT CAT -CAT CAT CAT
12483100 CA- CAT CAT CAT CAT CAT CA
1 CAT CAT CAT CAT CAT CAT CA
12483119 CCAGCTCATA
Statistics
Matches: 50, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
2 7 0.14
3 39 0.78
4 4 0.08
ACGTcount: A:0.35, C:0.40, G:0.02, T:0.24
Consensus pattern (3 bp):
CAT
Found at i:12483108 original size:26 final size:23
Alignment explanation
Indices: 12483054--12483121 Score: 102
Period size: 23 Copynumber: 3.0 Consensus size: 23
12483044 TATACGTATA
*
12483054 CCCATCATCATCATGCACACCAT
1 CCCATCATCATCATACACACCAT
12483077 CCCATCATCATCATACACACCAT
1 CCCATCATCATCATACACACCAT
*
12483100 CACATCATCATCAT-CATCACCA
1 CCCATCATCATCATACA-CACCA
12483122 GCTCATACGC
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
22 2 0.05
23 40 0.95
ACGTcount: A:0.34, C:0.43, G:0.01, T:0.22
Consensus pattern (23 bp):
CCCATCATCATCATACACACCAT
Found at i:12483176 original size:43 final size:43
Alignment explanation
Indices: 12483113--12483244 Score: 138
Period size: 43 Copynumber: 3.1 Consensus size: 43
12483103 ATCATCATCA
* * * * * ** *
12483113 TCATCACCAGCTCATACGCACTGCCTACTCTCACATGGCTGGG
1 TCATCATCAGCTTATGCGCACTCCCTACTCGCACATAACCGGG
* *
12483156 TCATCATCGGGTTATGCGCACTCCCTACTCGCACATAACCGGG
1 TCATCATCAGCTTATGCGCACTCCCTACTCGCACATAACCGGG
* * * *
12483199 TCATCCTCAGCTTATGCGCACTCCCTACTCGTACATAGCCGAG
1 TCATCATCAGCTTATGCGCACTCCCTACTCGCACATAACCGGG
12483242 TCA
1 TCA
12483245 ATATAATTAC
Statistics
Matches: 73, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 73 1.00
ACGTcount: A:0.21, C:0.36, G:0.18, T:0.24
Consensus pattern (43 bp):
TCATCATCAGCTTATGCGCACTCCCTACTCGCACATAACCGGG
Found at i:12487626 original size:20 final size:20
Alignment explanation
Indices: 12487569--12487631 Score: 101
Period size: 20 Copynumber: 3.2 Consensus size: 20
12487559 TATATACCCA
*
12487569 TCATCATCATC-TCACCAAC
1 TCATCATCATCATCACCAGC
*
12487588 CCATCATCATCATCACCAGC
1 TCATCATCATCATCACCAGC
12487608 TCATCATCATCATCACCAGC
1 TCATCATCATCATCACCAGC
12487628 TCAT
1 TCAT
12487632 GCGCACTCCC
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
19 10 0.25
20 30 0.75
ACGTcount: A:0.30, C:0.41, G:0.03, T:0.25
Consensus pattern (20 bp):
TCATCATCATCATCACCAGC
Found at i:12492416 original size:20 final size:20
Alignment explanation
Indices: 12492391--12492440 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
12492381 AAGAGGGAGT
*
12492391 AGAATGGGTGCAAGAACTAG
1 AGAATGGGTGCAAGAACCAG
12492411 AGAATGGGTGCAAGAACCAG
1 AGAATGGGTGCAAGAACCAG
*
12492431 ATAATGGGTG
1 AGAATGGGTG
12492441 TAGGAATTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.38, C:0.10, G:0.36, T:0.16
Consensus pattern (20 bp):
AGAATGGGTGCAAGAACCAG
Found at i:12493130 original size:138 final size:137
Alignment explanation
Indices: 12492880--12493156 Score: 527
Period size: 138 Copynumber: 2.0 Consensus size: 137
12492870 GTAGACAAAA
12492880 TCTGAAATCAATAAATTGTTGACAGCTGTTGGAACATTTATGAAAATCTATCAACACTTACTGCT
1 TCTGAAATCAATAAATTGTTGACAGCTGTTGGAACATTTATGAAAATCTATCAACACTTACTGCT
*
12492945 GAAAGTTTAATGATGATCTGCTAATACTTACTTGCTGCAAATCACTCCATATTGCTGCACATATG
66 GAAAGTTTAATGATGATCTGCTAATACTTACTTGCTACAAATCACTCCATATTGCTGCACATATG
12493010 TACAATG
131 TACAATG
12493017 TCNTGAAATCAATAAATTGTTGACAGCTGTTGGAACATTTATGAAAATCTATCAACACTTACTGC
1 TC-TGAAATCAATAAATTGTTGACAGCTGTTGGAACATTTATGAAAATCTATCAACACTTACTGC
*
12493082 TGAAAGTTTAATGATGATCTGCTAATACTTACTTGCTATAAATCACTCCATATTGCTGCACATAT
65 TGAAAGTTTAATGATGATCTGCTAATACTTACTTGCTACAAATCACTCCATATTGCTGCACATAT
12493147 GTACAATG
130 GTACAATG
12493155 TC
1 TC
12493157 ATTTTCTATA
Statistics
Matches: 137, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
137 2 0.01
138 135 0.99
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.34
Consensus pattern (137 bp):
TCTGAAATCAATAAATTGTTGACAGCTGTTGGAACATTTATGAAAATCTATCAACACTTACTGCT
GAAAGTTTAATGATGATCTGCTAATACTTACTTGCTACAAATCACTCCATATTGCTGCACATATG
TACAATG
Found at i:12495964 original size:13 final size:13
Alignment explanation
Indices: 12495946--12495971 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
12495936 CTATAAGAAT
12495946 TTATGTATATATA
1 TTATGTATATATA
12495959 TTATGTATATATA
1 TTATGTATATATA
12495972 CATATATATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (13 bp):
TTATGTATATATA
Found at i:12496152 original size:36 final size:36
Alignment explanation
Indices: 12496072--12496215 Score: 186
Period size: 36 Copynumber: 4.1 Consensus size: 36
12496062 TTAACTCAGC
* *
12496072 TCATGTGCACTCCCACACCATACATGG-A-AAAT-A
1 TCATGTGCACTCCCACACCACACATGGCATATATCA
*
12496105 TCATGTGCACTCCCACACCGCACATGGCATATATCA
1 TCATGTGCACTCCCACACCACACATGGCATATATCA
* * ***
12496141 TCATGTTCACTCCTACACTGTACATGGCATATATCA
1 TCATGTGCACTCCCACACCACACATGGCATATATCA
*
12496177 TTATGTGCACTCCCACACCACACATGGCATATATCA
1 TCATGTGCACTCCCACACCACACATGGCATATATCA
12496213 TCA
1 TCA
12496216 GCGTGTGCAC
Statistics
Matches: 94, Mismatches: 14, Indels: 3
0.85 0.13 0.03
Matches are distributed among these distances:
33 25 0.27
34 1 0.01
35 3 0.03
36 65 0.69
ACGTcount: A:0.31, C:0.32, G:0.12, T:0.26
Consensus pattern (36 bp):
TCATGTGCACTCCCACACCACACATGGCATATATCA
Found at i:12496259 original size:36 final size:36
Alignment explanation
Indices: 12496219--12496312 Score: 116
Period size: 36 Copynumber: 2.6 Consensus size: 36
12496209 ATCATCAGCG
* * * *
12496219 TGTGCACTATCACATAGCACACCACCATCATCGTCA
1 TGTGCACTACCACACAGCACACCACCATCACCATCA
* *
12496255 TGTGCACTCCCACACCGCACACCACCATCACCATCA
1 TGTGCACTACCACACAGCACACCACCATCACCATCA
* *
12496291 TGTGCACTCCCACACCGCACAC
1 TGTGCACTACCACACAGCACAC
12496313 ACATGGTTAT
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 52 1.00
ACGTcount: A:0.28, C:0.45, G:0.11, T:0.17
Consensus pattern (36 bp):
TGTGCACTACCACACAGCACACCACCATCACCATCA
Found at i:12509148 original size:40 final size:39
Alignment explanation
Indices: 12509092--12509194 Score: 127
Period size: 38 Copynumber: 2.6 Consensus size: 39
12509082 ACCCAGCTCA
* * ** *
12509092 TGTGCATCCCCTCACATTGTGCACATAGTTGGAGTCATCG
1 TGTGCATCCCCCCACATCGTGCACA-AGTCAGAGCCATCG
*
12509132 TGTGCATCCCCCCACATCGTGCAC-AGTCAGTGCCATCG
1 TGTGCATCCCCCCACATCGTGCACAAGTCAGAGCCATCG
*
12509170 TGTACATCCCCCCACATCGTGCACA
1 TGTGCATCCCCCCACATCGTGCACA
12509195 CGGGCACTAT
Statistics
Matches: 55, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
38 33 0.60
40 22 0.40
ACGTcount: A:0.20, C:0.36, G:0.19, T:0.24
Consensus pattern (39 bp):
TGTGCATCCCCCCACATCGTGCACAAGTCAGAGCCATCG
Found at i:12509187 original size:19 final size:19
Alignment explanation
Indices: 12509127--12509190 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
12509117 TAGTTGGAGT
*
12509127 CATCGTGTGCATCCCCCCA
1 CATCGTGTACATCCCCCCA
* ****
12509146 CATCGTGCACAGTCAGTGC-
1 CATCGTGTACA-TCCCCCCA
12509165 CATCGTGTACATCCCCCCA
1 CATCGTGTACATCCCCCCA
12509184 CATCGTG
1 CATCGTG
12509191 CACACGGGCA
Statistics
Matches: 32, Mismatches: 11, Indels: 4
0.68 0.23 0.09
Matches are distributed among these distances:
18 3 0.09
19 26 0.81
20 3 0.09
ACGTcount: A:0.19, C:0.41, G:0.19, T:0.22
Consensus pattern (19 bp):
CATCGTGTACATCCCCCCA
Found at i:12509318 original size:2 final size:2
Alignment explanation
Indices: 12509311--12509343 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
12509301 AATGCATAAC
12509311 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
12509344 CACATAATGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:12513788 original size:77 final size:77
Alignment explanation
Indices: 12513661--12513824 Score: 269
Period size: 77 Copynumber: 2.1 Consensus size: 77
12513651 TATGCCATCT
*
12513661 ATTTTAATTTTGGATGATTCATAAAAAATAGAAAATTGTTTCCTACTTTAAATAG-AATTCCTAA
1 ATTTTAATTTTGGATGATTCATAAAAAATACAAAATTGTTTCCTACTTTAAA-AGAAATTCCTAA
12513725 AATTAAGGATTAA-
65 AATTAAGGA-TAAC
* *
12513738 ATTTTAATTTTGGGTGATTCATAAAGAATACAAAATTGTTTCCTACTTTAAAAGAAATTCCTAAA
1 ATTTTAATTTTGGATGATTCATAAAAAATACAAAATTGTTTCCTACTTTAAAAGAAATTCCTAAA
12513803 ATTAAGGATAAC
66 ATTAAGGATAAC
12513815 ATTTTAATTT
1 ATTTTAATTT
12513825 GAGAAATTCA
Statistics
Matches: 82, Mismatches: 3, Indels: 4
0.92 0.03 0.04
Matches are distributed among these distances:
76 5 0.06
77 77 0.94
ACGTcount: A:0.41, C:0.09, G:0.10, T:0.40
Consensus pattern (77 bp):
ATTTTAATTTTGGATGATTCATAAAAAATACAAAATTGTTTCCTACTTTAAAAGAAATTCCTAAA
ATTAAGGATAAC
Found at i:12514059 original size:22 final size:22
Alignment explanation
Indices: 12514034--12514077 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
12514024 ATATTTTAGT
12514034 AAGTCTACCTAAAATAAAGAGG
1 AAGTCTACCTAAAATAAAGAGG
*
12514056 AAGTTTACCTAAAATAAAGAGG
1 AAGTCTACCTAAAATAAAGAGG
12514078 TTTCTAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.50, C:0.11, G:0.18, T:0.20
Consensus pattern (22 bp):
AAGTCTACCTAAAATAAAGAGG
Found at i:12518477 original size:28 final size:29
Alignment explanation
Indices: 12518436--12518495 Score: 68
Period size: 30 Copynumber: 2.1 Consensus size: 29
12518426 GTCTATGGGC
* *
12518436 AATTTTTCAGTTTT-TGGGGCAAAAATGT
1 AATTTTTCACTTTTAGGGGGCAAAAATGT
* *
12518464 AATTTTTGACTTTTACGGGGGCAAAAGTGT
1 AATTTTTCACTTTTA-GGGGGCAAAAATGT
12518494 AA
1 AA
12518496 ATTTCAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 12 0.46
30 14 0.54
ACGTcount: A:0.30, C:0.08, G:0.23, T:0.38
Consensus pattern (29 bp):
AATTTTTCACTTTTAGGGGGCAAAAATGT
Found at i:12528083 original size:29 final size:29
Alignment explanation
Indices: 12528037--12528092 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
12528027 CAACCATCGC
*
12528037 GACGTCCCTATAGGCACTCATTACCCCGT
1 GACGTCCCTATAGACACTCATTACCCCGT
12528066 GACGTCCCTATAGACACTCATTACCCC
1 GACGTCCCTATAGACACTCATTACCCC
12528093 AAATGCCGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.23, C:0.39, G:0.14, T:0.23
Consensus pattern (29 bp):
GACGTCCCTATAGACACTCATTACCCCGT
Found at i:12529283 original size:10 final size:10
Alignment explanation
Indices: 12529255--12529283 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
12529245 TAAATCCATT
12529255 TTTCATAAAA
1 TTTCATAAAA
12529265 TTT-ATAAAA
1 TTTCATAAAA
12529274 TTTCATAAAA
1 TTTCATAAAA
12529284 ACTACCTTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (10 bp):
TTTCATAAAA
Found at i:12534760 original size:5 final size:5
Alignment explanation
Indices: 12534753--12534792 Score: 71
Period size: 5 Copynumber: 8.0 Consensus size: 5
12534743 CTATTCAATC
*
12534753 TAACC TAACT TAACT TAACT TAACT TAACT TAACT TAACT
1 TAACT TAACT TAACT TAACT TAACT TAACT TAACT TAACT
12534793 GGACTTGGGG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 34 1.00
ACGTcount: A:0.40, C:0.23, G:0.00, T:0.38
Consensus pattern (5 bp):
TAACT
Found at i:12534798 original size:15 final size:15
Alignment explanation
Indices: 12534753--12534798 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
12534743 CTATTCAATC
* *
12534753 TAACCTAACTTAACT
1 TAACTTAACTGAACT
*
12534768 TAACTTAACTTAACT
1 TAACTTAACTGAACT
*
12534783 TAACTTAACTGGACT
1 TAACTTAACTGAACT
12534798 T
1 T
12534799 GGGGCCACGC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.37, C:0.22, G:0.04, T:0.37
Consensus pattern (15 bp):
TAACTTAACTGAACT
Found at i:12534854 original size:15 final size:15
Alignment explanation
Indices: 12534834--12534879 Score: 74
Period size: 15 Copynumber: 3.1 Consensus size: 15
12534824 TTCTTAAAAC
12534834 AACTTTAAAATCAAA
1 AACTTTAAAATCAAA
*
12534849 AACTTTAAAATCCAA
1 AACTTTAAAATCAAA
*
12534864 AGCTTTAAAATCAAA
1 AACTTTAAAATCAAA
12534879 A
1 A
12534880 TATCTGATCT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.57, C:0.15, G:0.02, T:0.26
Consensus pattern (15 bp):
AACTTTAAAATCAAA
Found at i:12536288 original size:13 final size:13
Alignment explanation
Indices: 12536270--12536294 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
12536260 TTCCAGAAAA
12536270 TTTATAAAATCAT
1 TTTATAAAATCAT
12536283 TTTATAAAATCA
1 TTTATAAAATCA
12536295 CAATTTCTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTATAAAATCAT
Found at i:12538579 original size:36 final size:36
Alignment explanation
Indices: 12538519--12538630 Score: 111
Period size: 39 Copynumber: 3.0 Consensus size: 36
12538509 CTCAACTCAG
** *
12538519 CTCATGTGCACTTCCACATTGCACA-GAGCTAATATC-
1 CTCATGTGCAC-TCCACACCGCACATG-GCAAATATCA
12538555 CTCATGTGCACTCGCACACCGCACATGGCAAATATCA
1 CTCATGTGCACTC-CACACCGCACATGGCAAATATCA
* *
12538592 TCATCATGTGCTCTCCCACACCGCACATGGCATATATCA
1 -C-TCATGTGCACT-CCACACCGCACATGGCAAATATCA
12538631 TCGGCATGTG
Statistics
Matches: 65, Mismatches: 5, Indels: 9
0.82 0.06 0.11
Matches are distributed among these distances:
35 2 0.03
36 28 0.43
37 1 0.02
38 1 0.02
39 32 0.49
40 1 0.02
ACGTcount: A:0.28, C:0.34, G:0.14, T:0.24
Consensus pattern (36 bp):
CTCATGTGCACTCCACACCGCACATGGCAAATATCA
Found at i:12538612 original size:39 final size:39
Alignment explanation
Indices: 12538556--12538651 Score: 138
Period size: 39 Copynumber: 2.5 Consensus size: 39
12538546 GCTAATATCC
* *
12538556 TCATGTGCACTCGCACACCGCACATGGCAAATATCATCA
1 TCATGTGCTCTCCCACACCGCACATGGCAAATATCATCA
* *
12538595 TCATGTGCTCTCCCACACCGCACATGGCATATATCATCG
1 TCATGTGCTCTCCCACACCGCACATGGCAAATATCATCA
* *
12538634 GCATGTGCTCTTCCACAC
1 TCATGTGCTCTCCCACAC
12538652 TGTACACTAC
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 51 1.00
ACGTcount: A:0.25, C:0.35, G:0.16, T:0.24
Consensus pattern (39 bp):
TCATGTGCTCTCCCACACCGCACATGGCAAATATCATCA
Found at i:12539580 original size:19 final size:20
Alignment explanation
Indices: 12539540--12539582 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
12539530 TGAAGAATCT
**
12539540 AAAG-AAGAAAGAAAAGGGA
1 AAAGAAAGAAAGAAAAGAAA
12539559 AAAGAAAGAAAGAAAA-AAA
1 AAAGAAAGAAAGAAAAGAAA
12539578 AAAGA
1 AAAGA
12539583 GATCGATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 10 0.48
20 11 0.52
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (20 bp):
AAAGAAAGAAAGAAAAGAAA
Found at i:12542880 original size:35 final size:34
Alignment explanation
Indices: 12542836--12542945 Score: 89
Period size: 35 Copynumber: 3.2 Consensus size: 34
12542826 GTTAATTTTT
* *
12542836 GGTTTTGGTTGATCTTGGGAAAAACCATTATTAAA
1 GGTTGTGGTTGATCTTGTGAAAAACCATT-TTAAA
* * * * *
12542871 GGTTGTGGTTAAGCTTGTGATAATCCATTTT--G
1 GGTTGTGGTTGATCTTGTGAAAAACCATTTTAAA
* * **
12542903 GGTTTTGGTTGATCTTGTAAAAAACTGTTGTTAAA
1 GGTTGTGGTTGATCTTGTGAAAAACCATT-TTAAA
12542938 GGTTGTGG
1 GGTTGTGG
12542946 CTGTGAAATG
Statistics
Matches: 55, Mismatches: 17, Indels: 6
0.71 0.22 0.08
Matches are distributed among these distances:
32 21 0.38
33 2 0.04
34 2 0.04
35 30 0.55
ACGTcount: A:0.25, C:0.07, G:0.27, T:0.41
Consensus pattern (34 bp):
GGTTGTGGTTGATCTTGTGAAAAACCATTTTAAA
Found at i:12543235 original size:11 final size:11
Alignment explanation
Indices: 12543215--12543244 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
12543205 AATATTATTT
12543215 TATTAATAAAA
1 TATTAATAAAA
*
12543226 TATTATTAAAA
1 TATTAATAAAA
12543237 TATTAATA
1 TATTAATA
12543245 TTTAGCAGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (11 bp):
TATTAATAAAA
Found at i:12546346 original size:11 final size:11
Alignment explanation
Indices: 12546330--12546370 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
12546320 AGAGTTTTTG
*
12546330 GGTTTAAAGCT
1 GGTTTAAAGTT
12546341 GGTTTAAAGTT
1 GGTTTAAAGTT
*
12546352 GTTTTAAAGTT
1 GGTTTAAAGTT
*
12546363 GTTTTAAA
1 GGTTTAAA
12546371 ATTTACAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.29, C:0.02, G:0.22, T:0.46
Consensus pattern (11 bp):
GGTTTAAAGTT
Found at i:12546443 original size:5 final size:5
Alignment explanation
Indices: 12546400--12546439 Score: 62
Period size: 5 Copynumber: 8.0 Consensus size: 5
12546390 CCCTAAGTCC
* *
12546400 AGTTA AGTTA AGATA AGTTA AGTTA AGTTA AGTTA GGTTA
1 AGTTA AGTTA AGTTA AGTTA AGTTA AGTTA AGTTA AGTTA
12546440 GGTTGAATAG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.40, C:0.00, G:0.23, T:0.38
Consensus pattern (5 bp):
AGTTA
Found at i:12556554 original size:19 final size:17
Alignment explanation
Indices: 12556523--12556566 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 17
12556513 TTTCCACCCG
12556523 AGAAGAAGAAGAAAAAGAA
1 AGAA-AAGAAG-AAAAGAA
12556542 AGAAAAGAGAGAAAAGAA
1 AGAAAAGA-AGAAAAGAA
*
12556560 AGGAAAG
1 AGAAAAG
12556567 GCACGGGTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 17 0.74
19 6 0.26
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (17 bp):
AGAAAAGAAGAAAAGAA
Found at i:12557820 original size:2 final size:2
Alignment explanation
Indices: 12557813--12557849 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
12557803 TATGACATAG
*
12557813 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
12557850 CAACATTATA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:12560644 original size:21 final size:21
Alignment explanation
Indices: 12560617--12560690 Score: 130
Period size: 21 Copynumber: 3.5 Consensus size: 21
12560607 TCATCTGTAT
*
12560617 GAGGGTTTCTCTCAACTGCAC
1 GAGGGTTTCTCTCAATTGCAC
*
12560638 AAGGGTTTCTCTCAATTGCAC
1 GAGGGTTTCTCTCAATTGCAC
12560659 GAGGGTTTCTCTCAATTGCAC
1 GAGGGTTTCTCTCAATTGCAC
12560680 GAGGGTTTCTC
1 GAGGGTTTCTC
12560691 ATTAAAACCT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 50 1.00
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.32
Consensus pattern (21 bp):
GAGGGTTTCTCTCAATTGCAC
Found at i:12561700 original size:21 final size:21
Alignment explanation
Indices: 12561670--12561712 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
12561660 GGCAGCAAGT
*
12561670 TTCTCACTGCAGCGAGATTCA
1 TTCTCACTGCAGAGAGATTCA
*
12561691 TTCTCGCTGCAGAGAGATTCA
1 TTCTCACTGCAGAGAGATTCA
12561712 T
1 T
12561713 GCAGCTAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (21 bp):
TTCTCACTGCAGAGAGATTCA
Found at i:12562292 original size:40 final size:39
Alignment explanation
Indices: 12562235--12562340 Score: 135
Period size: 38 Copynumber: 2.7 Consensus size: 39
12562225 CTCACCCAGC
*
12562235 TCATGTGCATCCCCCCACATCGTGCACATAGCCAG-AGTCA
1 TCATGTGCATCCCCCCACATCGTGCACA-AGCCAGTA-CCA
* *
12562275 TCATGTGCATCCTCCCACATCGTGCAC-AGTCAGTACCA
1 TCATGTGCATCCCCCCACATCGTGCACAAGCCAGTACCA
* *
12562313 TCGTGTACATCCCCCCACATCGTGCACA
1 TCATGTGCATCCCCCCACATCGTGCACA
12562341 CAGGCACTAT
Statistics
Matches: 58, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
38 31 0.53
39 1 0.02
40 26 0.45
ACGTcount: A:0.24, C:0.39, G:0.16, T:0.22
Consensus pattern (39 bp):
TCATGTGCATCCCCCCACATCGTGCACAAGCCAGTACCA
Found at i:12564007 original size:26 final size:25
Alignment explanation
Indices: 12563977--12564030 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 25
12563967 TCAATTCACA
12563977 TAAAT-ATAGTTCTA-TACGTTATCTCC
1 TAAATCAT-GTTCTACTA-GTTAT-TCC
12564003 TAAATCATGTTCTACTAGTTATTCC
1 TAAATCATGTTCTACTAGTTATTCC
12564028 TAA
1 TAA
12564031 CTAGTTTCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
25 6 0.23
26 16 0.62
27 4 0.15
ACGTcount: A:0.31, C:0.19, G:0.07, T:0.43
Consensus pattern (25 bp):
TAAATCATGTTCTACTAGTTATTCC
Found at i:12570627 original size:21 final size:21
Alignment explanation
Indices: 12570579--12570633 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
12570569 CATCAATTGT
*
12570579 ACGAGGGTTCCTCTCAACTGC
1 ACGAGGGTTTCTCTCAACTGC
*
12570600 ACAAGGGTTTCTCTCAACTGC
1 ACGAGGGTTTCTCTCAACTGC
*
12570621 ATGAGGGTTTCTC
1 ACGAGGGTTTCTC
12570634 ATTAAAACCT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.20, C:0.27, G:0.24, T:0.29
Consensus pattern (21 bp):
ACGAGGGTTTCTCTCAACTGC
Found at i:12573088 original size:54 final size:54
Alignment explanation
Indices: 12573026--12573138 Score: 190
Period size: 54 Copynumber: 2.1 Consensus size: 54
12573016 TGAGGAAGAT
**
12573026 AGATGGGATGTCCGTCTATGTGCACGATGTGGTGGGATGCACATGAGCTGGGTG
1 AGATGGGATGTCCAACTATGTGCACGATGTGGTGGGATGCACATGAGCTGGGTG
* *
12573080 AGATGGGATGTCCAACTATGTGCATGATGTGGTGGGATGCACATGAGTTGGGTG
1 AGATGGGATGTCCAACTATGTGCACGATGTGGTGGGATGCACATGAGCTGGGTG
12573134 AGATG
1 AGATG
12573139 CACATAATGA
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.21, C:0.12, G:0.40, T:0.27
Consensus pattern (54 bp):
AGATGGGATGTCCAACTATGTGCACGATGTGGTGGGATGCACATGAGCTGGGTG
Found at i:12573996 original size:62 final size:62
Alignment explanation
Indices: 12573926--12574051 Score: 207
Period size: 62 Copynumber: 2.0 Consensus size: 62
12573916 AATTTCAATA
* * * *
12573926 CTCACCTTGCTAGTTTTGTGATTGGATTCCTCTTCAAGAATTCCCAAACTGTTATAGAGAGT
1 CTCACCTTGCTAGATTTGTAATTGGATTCCTCCTCAAGAATTCCCAAACTATTATAGAGAGT
*
12573988 CTCACCTTGCTAGATTTGTAATTGGATTCCTCCTCAAGAATTCCCAAACTATTATAGAGGGT
1 CTCACCTTGCTAGATTTGTAATTGGATTCCTCCTCAAGAATTCCCAAACTATTATAGAGAGT
12574050 CT
1 CT
12574052 TTCTTTCTCT
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (62 bp):
CTCACCTTGCTAGATTTGTAATTGGATTCCTCCTCAAGAATTCCCAAACTATTATAGAGAGT
Found at i:12587408 original size:35 final size:35
Alignment explanation
Indices: 12587371--12587488 Score: 145
Period size: 35 Copynumber: 3.5 Consensus size: 35
12587361 AATCCTAAGA
12587371 AAAAG-CATTGTTAAAGGTTGTGGTTGAGCCTGTG
1 AAAAGCCATTGTTAAAGGTTGTGGTTGAGCCTGTG
* * *
12587405 AAAAGCCATT-TT--GGGTTTTGGTTGATCCTGTG
1 AAAAGCCATTGTTAAAGGTTGTGGTTGAGCCTGTG
* **
12587437 AAAAGCCATTATTAAAGGTTGTGGTTGAGTTTGTG
1 AAAAGCCATTGTTAAAGGTTGTGGTTGAGCCTGTG
*
12587472 AAAAGCCATTGTAAAAG
1 AAAAGCCATTGTTAAAG
12587489 CTTGGTGGAA
Statistics
Matches: 70, Mismatches: 10, Indels: 7
0.80 0.11 0.08
Matches are distributed among these distances:
32 27 0.39
33 2 0.03
34 7 0.10
35 34 0.49
ACGTcount: A:0.29, C:0.09, G:0.28, T:0.34
Consensus pattern (35 bp):
AAAAGCCATTGTTAAAGGTTGTGGTTGAGCCTGTG
Found at i:12587416 original size:67 final size:67
Alignment explanation
Indices: 12587345--12587481 Score: 204
Period size: 67 Copynumber: 2.0 Consensus size: 67
12587335 TAGAAAGTTA
*
12587345 ATTTTGGGTTTTGGTTAATCCTAAGAAAAAG-CATTGTTAAAGGTTGTGGTTGAGCCTGTGAAAA
1 ATTTTGGGTTTTGGTTAATCCTAAG-AAAAGCCATTATTAAAGGTTGTGGTTGAGCCTGTGAAAA
12587409 GCC
65 GCC
* ** **
12587412 ATTTTGGGTTTTGGTTGATCCTGTGAAAAGCCATTATTAAAGGTTGTGGTTGAGTTTGTGAAAAG
1 ATTTTGGGTTTTGGTTAATCCTAAGAAAAGCCATTATTAAAGGTTGTGGTTGAGCCTGTGAAAAG
12587477 CC
66 CC
12587479 ATT
1 ATT
12587482 GTAAAAGCTT
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
66 5 0.08
67 58 0.92
ACGTcount: A:0.26, C:0.09, G:0.27, T:0.37
Consensus pattern (67 bp):
ATTTTGGGTTTTGGTTAATCCTAAGAAAAGCCATTATTAAAGGTTGTGGTTGAGCCTGTGAAAAG
CC
Found at i:12598028 original size:77 final size:77
Alignment explanation
Indices: 12597892--12598068 Score: 227
Period size: 77 Copynumber: 2.3 Consensus size: 77
12597882 TATGTCATCT
* * *
12597892 ATTTTATTTTTGGCTAATTCATAAAATATAGGAAATTGTTTCCTACTTTAAAGTGAATTCCTAAA
1 ATTTTAATTTTGGCTAATTCATAAAATATAGGAAATTATTTCCTACTTTAAAGTAAATTCCTAAA
12597957 ATTAAGGATAGA-
66 ATTAAGGATA-AC
* * *
12597969 ATTTTAATTTTGGGTGATTCATAAAGA-GTAGGAAATTATTTCCTACTTTCAAAG-AAATTCCTA
1 ATTTTAATTTTGGCTAATTCATAAA-ATATAGGAAATTATTTCCTACTTT-AAAGTAAATTCCTA
12598032 AAATTAAGGATAAC
64 AAATTAAGGATAAC
**
12598046 ATTTTAA-TTTGGAAAATTCATAA
1 ATTTTAATTTTGGCTAATTCATAA
12598069 GAAATAGTTT
Statistics
Matches: 88, Mismatches: 9, Indels: 7
0.85 0.09 0.07
Matches are distributed among these distances:
76 14 0.16
77 69 0.78
78 5 0.06
ACGTcount: A:0.39, C:0.09, G:0.13, T:0.39
Consensus pattern (77 bp):
ATTTTAATTTTGGCTAATTCATAAAATATAGGAAATTATTTCCTACTTTAAAGTAAATTCCTAAA
ATTAAGGATAAC
Found at i:12603620 original size:42 final size:42
Alignment explanation
Indices: 12603561--12603651 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
12603551 TACCATCCCA
12603561 TCATCATCAGCTCATGTGCACTCCCACACT-CACATAGCTGGG
1 TCATCATCAGCTCATGTGCACTCCCACA-TGCACATAGCTGGG
12603603 TCATCATCAGCTCATGTGCACTCCCACATGCACATAGCTGGG
1 TCATCATCAGCTCATGTGCACTCCCACATGCACATAGCTGGG
12603645 TCATCAT
1 TCATCAT
12603652 TATCACATAA
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
41 1 0.02
42 47 0.98
ACGTcount: A:0.24, C:0.34, G:0.16, T:0.25
Consensus pattern (42 bp):
TCATCATCAGCTCATGTGCACTCCCACATGCACATAGCTGGG
Found at i:12605761 original size:35 final size:35
Alignment explanation
Indices: 12605715--12605853 Score: 161
Period size: 35 Copynumber: 4.0 Consensus size: 35
12605705 CAGTGCGTGT
** *
12605715 GATGATATTGAAGTGTGCAAGTAGAAAATGCACAC
1 GATGATATTGAAGTGTGCAAGTAGGGAGTGCACAC
12605750 GATGATATTGAAGTGTGCAAGTAGGGAGTGCACAC
1 GATGATATTGAAGTGTGCAAGTAGGGAGTGCACAC
** * * *
12605785 GATGATATAAAAATGTGCGAGTAGGGAGTGCACAT
1 GATGATATTGAAGTGTGCAAGTAGGGAGTGCACAC
*** **
12605820 GATGATATTGCCTTGTGCGTGTAGGGAGTGCACA
1 GATGATATTGAAGTGTGCAAGTAGGGAGTGCACA
12605854 TTGGCTGAGT
Statistics
Matches: 90, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 90 1.00
ACGTcount: A:0.32, C:0.12, G:0.32, T:0.24
Consensus pattern (35 bp):
GATGATATTGAAGTGTGCAAGTAGGGAGTGCACAC
Found at i:12618602 original size:19 final size:19
Alignment explanation
Indices: 12618578--12618615 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
12618568 CCATTTGACT
*
12618578 TATTGGAGTATGATTTGAG
1 TATTGGAGTATAATTTGAG
12618597 TATTGGAGTATAATTTGAG
1 TATTGGAGTATAATTTGAG
12618616 GGTTCGGCAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.42
Consensus pattern (19 bp):
TATTGGAGTATAATTTGAG
Found at i:12629200 original size:19 final size:19
Alignment explanation
Indices: 12629176--12629213 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
12629166 CCATTTGATA
12629176 TATTGGAGTATAATTTGAG
1 TATTGGAGTATAATTTGAG
12629195 TATTGGAGTATAATTTGAG
1 TATTGGAGTATAATTTGAG
12629214 GGTTTGGCAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.26, T:0.42
Consensus pattern (19 bp):
TATTGGAGTATAATTTGAG
Found at i:12635311 original size:54 final size:53
Alignment explanation
Indices: 12635225--12635374 Score: 210
Period size: 54 Copynumber: 2.8 Consensus size: 53
12635215 TCATCATGTG
* * * *
12635225 CATCTCACCTAGTTCATGTGCATCCCACCACATCATGCACATAGCCGAACATCC
1 CATCTCACCCAG-TAATGTGCATCCCACCACATCGTGCACATAGCCGAACAACC
* *
12635279 CATCTCACCCAGCTAATGTGCATCCCAGCACATTGTGCACATAGCCGAACAACC
1 CATCTCACCCAG-TAATGTGCATCCCACCACATCGTGCACATAGCCGAACAACC
*
12635333 CATCTCACCCAGAACATGTGCATCCCACCACATCGTGCACAT
1 CATCTCACCCAGTA-ATGTGCATCCCACCACATCGTGCACAT
12635375 GGCTGGACAG
Statistics
Matches: 85, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
53 1 0.01
54 84 0.99
ACGTcount: A:0.29, C:0.39, G:0.13, T:0.20
Consensus pattern (53 bp):
CATCTCACCCAGTAATGTGCATCCCACCACATCGTGCACATAGCCGAACAACC
Found at i:12635496 original size:2 final size:2
Alignment explanation
Indices: 12635489--12635513 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
12635479 TATGACATAG
12635489 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
12635514 CAACATTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:12635610 original size:88 final size:87
Alignment explanation
Indices: 12635490--12635666 Score: 329
Period size: 88 Copynumber: 2.0 Consensus size: 87
12635480 ATGACATAGT
12635490 ATATATATATATATATATATATATCAACATTATA-ACAAAACATATGGATTCATCTTCTTACACA
1 ATATATATATATATATATATATATCAACATTATACA-AAAACATATGGATTCATCTTCTTACACA
12635554 TTTCACATTTCACAACTTCAAAC
65 TTTCACATTTCACAACTTCAAAC
12635577 ANTATATATATATATATATATATATCAACATTATACAAAAACATATGGATTCATCTTCTTACACA
1 A-TATATATATATATATATATATATCAACATTATACAAAAACATATGGATTCATCTTCTTACACA
12635642 TTTCACATTTCACAACTTCAAAC
65 TTTCACATTTCACAACTTCAAAC
12635665 AT
1 AT
12635667 TTTAGCAAGG
Statistics
Matches: 88, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
87 2 0.02
88 85 0.97
89 1 0.01
ACGTcount: A:0.42, C:0.18, G:0.02, T:0.37
Consensus pattern (87 bp):
ATATATATATATATATATATATATCAACATTATACAAAAACATATGGATTCATCTTCTTACACAT
TTCACATTTCACAACTTCAAAC
Found at i:12655078 original size:19 final size:19
Alignment explanation
Indices: 12655054--12655091 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
12655044 CTGCCAAACC
*
12655054 CTCAAATTATACTCCAATA
1 CTCAAATCATACTCCAATA
12655073 CTCAAATCATACTCCAATA
1 CTCAAATCATACTCCAATA
12655092 AGTCAAATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.29, G:0.00, T:0.29
Consensus pattern (19 bp):
CTCAAATCATACTCCAATA
Found at i:12666072 original size:54 final size:54
Alignment explanation
Indices: 12665990--12666202 Score: 320
Period size: 54 Copynumber: 3.9 Consensus size: 54
12665980 TCATCATGTG
12665990 CATCTCA-CTCAGCTCATGTGCATCCCACCACATCGTGCACATAGCCGGACATCC
1 CATCTCACCT-AGCTCATGTGCATCCCACCACATCGTGCACATAGCCGGACATCC
* **
12666044 CATCTCACCTAGCTAATGTGCATCCCACCACATCGTGCACATAGCCAAACATCC
1 CATCTCACCTAGCTCATGTGCATCCCACCACATCGTGCACATAGCCGGACATCC
* * * *
12666098 CATCTCACCCAACTCATGTCCATCCCACCACATCGTGCACATAGCCGGACGTCC
1 CATCTCACCTAGCTCATGTGCATCCCACCACATCGTGCACATAGCCGGACATCC
* * *
12666152 CATTTGACCTAGCTCATGTGCATCCCACCACATCATGCACATAGCCGGACA
1 CATCTCACCTAGCTCATGTGCATCCCACCACATCGTGCACATAGCCGGACA
12666203 GTATCACCAT
Statistics
Matches: 141, Mismatches: 17, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
54 139 0.99
55 2 0.01
ACGTcount: A:0.26, C:0.40, G:0.14, T:0.20
Consensus pattern (54 bp):
CATCTCACCTAGCTCATGTGCATCCCACCACATCGTGCACATAGCCGGACATCC
Found at i:12680215 original size:22 final size:22
Alignment explanation
Indices: 12680190--12680232 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
12680180 AGTTAAAAGA
*
12680190 ATTCTTGTTACAATGAAAATCC
1 ATTCTTGCTACAATGAAAATCC
*
12680212 ATTCTTGCTGCAATGAAAATC
1 ATTCTTGCTACAATGAAAATC
12680233 AATTTAGAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.35
Consensus pattern (22 bp):
ATTCTTGCTACAATGAAAATCC
Found at i:12680386 original size:36 final size:36
Alignment explanation
Indices: 12680346--12680475 Score: 127
Period size: 36 Copynumber: 3.6 Consensus size: 36
12680336 GCTCACCAGC
* * *
12680346 TCATGTGCACTCCTACATCACACATAGCTAAAACCA
1 TCATGTGCACTCCCACACCACACATAGCCAAAACCA
* * **
12680382 TCATGTGCACTCCCACACCGCACATAGCCAACACTG
1 TCATGTGCACTCCCACACCACACATAGCCAAAACCA
** * *
12680418 TCATGTGCACTCCCACACTGCACGT-GGCAAATACCA
1 TCATGTGCACTCCCACACCACACATAGCCAAA-ACCA
* *
12680454 TCATGTACACTCTCACACCACA
1 TCATGTGCACTCCCACACCACA
12680476 TCATCATCGG
Statistics
Matches: 76, Mismatches: 17, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
35 4 0.05
36 72 0.95
ACGTcount: A:0.31, C:0.38, G:0.12, T:0.20
Consensus pattern (36 bp):
TCATGTGCACTCCCACACCACACATAGCCAAAACCA
Found at i:12682049 original size:40 final size:41
Alignment explanation
Indices: 12682003--12682108 Score: 137
Period size: 40 Copynumber: 2.6 Consensus size: 41
12681993 AGCATGTTGG
*
12682003 ACAGAAAGTTTCTCGCTGCAGCGAGATT-CAGGTAGCCA-AA
1 ACAGAAAGTTTCTTGCTGCAGCGAGATTGCAGGTAG-CAGAA
* *
12682043 ACAGAAAGTTTCTTGCTGCAACGAG-TTGTAGGTAGCAGAA
1 ACAGAAAGTTTCTTGCTGCAGCGAGATTGCAGGTAGCAGAA
* *
12682083 ACAGAATGTTTCTTGCTGCAGTGAGA
1 ACAGAAAGTTTCTTGCTGCAGCGAGA
12682109 ATCAAGCCAA
Statistics
Matches: 57, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
39 4 0.07
40 53 0.93
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (41 bp):
ACAGAAAGTTTCTTGCTGCAGCGAGATTGCAGGTAGCAGAA
Found at i:12682456 original size:42 final size:42
Alignment explanation
Indices: 12682368--12682540 Score: 213
Period size: 42 Copynumber: 4.1 Consensus size: 42
12682358 ACCATCCCAC
*** * *
12682368 CATCATCAGCTCATGTGCACTTCCCACTTGCACATAGCTGGGT
1 CATCATCAGCTCATGTGCAC-TCCCACACACACATAGTTAGGT
** *
12682411 CATCATCAGCTCATGCACACT-CCACACCGCACATAGTTAGGT
1 CATCATCAGCTCATGTGCACTCCCACA-CACACATAGTTAGGT
* *
12682453 CATCATCACCTCATGTGCACTCCCACACACACATAGTTGGGT
1 CATCATCAGCTCATGTGCACTCCCACACACACATAGTTAGGT
* *
12682495 CATCATCAGCTTATGTGCACTCTCACACACACATAGTTAGGT
1 CATCATCAGCTCATGTGCACTCCCACACACACATAGTTAGGT
12682537 CATC
1 CATC
12682541 TTTATCTCAT
Statistics
Matches: 113, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
41 4 0.04
42 86 0.76
43 23 0.20
ACGTcount: A:0.26, C:0.34, G:0.15, T:0.25
Consensus pattern (42 bp):
CATCATCAGCTCATGTGCACTCCCACACACACATAGTTAGGT
Found at i:12682550 original size:84 final size:85
Alignment explanation
Indices: 12682368--12682540 Score: 242
Period size: 84 Copynumber: 2.0 Consensus size: 85
12682358 ACCATCCCAC
* ***
12682368 CATCATCAGCTCATGTGCACTTCCCACTTGCACATAGCTGGGTCATCATCAGCTCATGCACACTC
1 CATCATCACCTCATGTGCACTTCCCACACACACATAGCTGGGTCATCATCAGCTCATGCACACTC
*
12682433 CACACCGCACATAGTTAGGT
66 CACACCACACATAGTTAGGT
* * **
12682453 CATCATCACCTCATGTGCAC-TCCCACACACACATAGTTGGGTCATCATCAGCTTATGTGCACTC
1 CATCATCACCTCATGTGCACTTCCCACACACACATAGCTGGGTCATCATCAGCTCATGCACACTC
12682517 TCACA-CACACATAGTTAGGT
66 -CACACCACACATAGTTAGGT
12682537 CATC
1 CATC
12682541 TTTATCTCAT
Statistics
Matches: 78, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
84 55 0.71
85 23 0.29
ACGTcount: A:0.26, C:0.34, G:0.15, T:0.25
Consensus pattern (85 bp):
CATCATCACCTCATGTGCACTTCCCACACACACATAGCTGGGTCATCATCAGCTCATGCACACTC
CACACCACACATAGTTAGGT
Found at i:12699404 original size:4 final size:4
Alignment explanation
Indices: 12699379--12699470 Score: 59
Period size: 4 Copynumber: 23.8 Consensus size: 4
12699369 AAACCAAGTT
* * *
12699379 TTTC TTCC TTTC TTT- ATT- TTTC TTTC -TCC TTTC TTTC TTTCC TTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTT-C TTTC
* * * * *
12699425 -TCC TTTA TTTC TTTC CTTC TTTCC TTTC -TCC TTTA TTTC TTTC TTT
1 TTTC TTTC TTTC TTTC TTTC TTT-C TTTC TTTC TTTC TTTC TTTC TTT
12699471 TCTCCTTTCT
Statistics
Matches: 66, Mismatches: 16, Indels: 12
0.70 0.17 0.13
Matches are distributed among these distances:
3 10 0.15
4 48 0.73
5 8 0.12
ACGTcount: A:0.03, C:0.28, G:0.00, T:0.68
Consensus pattern (4 bp):
TTTC
Found at i:12699425 original size:20 final size:20
Alignment explanation
Indices: 12699379--12699453 Score: 87
Period size: 20 Copynumber: 3.6 Consensus size: 20
12699369 AAACCAAGTT
* *
12699379 TTTCTTCCTTTCTTTATTTTTC
1 TTTC-TCCTTTCTTT-CTTTCC
12699401 TTTCTCCTTTCTTTCTTTCC
1 TTTCTCCTTTCTTTCTTTCC
*
12699421 TTTCTCCTTTATTTCTTTCC
1 TTTCTCCTTTCTTTCTTTCC
*
12699441 TTCTTTCCTTTCT
1 TT-TCTCCTTTCT
12699454 CCTTTATTTC
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
20 25 0.53
21 18 0.38
22 4 0.09
ACGTcount: A:0.03, C:0.29, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTCTCCTTTCTTTCTTTCC
Found at i:12699444 original size:28 final size:28
Alignment explanation
Indices: 12699407--12699480 Score: 116
Period size: 28 Copynumber: 2.7 Consensus size: 28
12699397 TTTCTTTCTC
*
12699407 CTTTCTTTCTTTCCTTTCTCCTTTATTT
1 CTTTCCTTCTTTCCTTTCTCCTTTATTT
12699435 CTTTCCTTCTTTCCTTTCTCCTTTATTT
1 CTTTCCTTCTTTCCTTTCTCCTTTATTT
12699463 CTTT-CTT-TTCTCCTTTCT
1 CTTTCCTTCTT-TCCTTTCT
12699481 TCCAACTGAT
Statistics
Matches: 44, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
26 2 0.05
27 11 0.25
28 31 0.70
ACGTcount: A:0.03, C:0.31, G:0.00, T:0.66
Consensus pattern (28 bp):
CTTTCCTTCTTTCCTTTCTCCTTTATTT
Found at i:12699458 original size:20 final size:20
Alignment explanation
Indices: 12699435--12699479 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
12699425 TCCTTTATTT
12699435 CTTTCCTTCTTTCCTTTCTC
1 CTTTCCTTCTTTCCTTTCTC
** *
12699455 CTTTATTTCTTTCTTTTCTC
1 CTTTCCTTCTTTCCTTTCTC
12699475 CTTTC
1 CTTTC
12699480 TTCCAACTGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.02, C:0.33, G:0.00, T:0.64
Consensus pattern (20 bp):
CTTTCCTTCTTTCCTTTCTC
Found at i:12699828 original size:20 final size:20
Alignment explanation
Indices: 12699803--12699844 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
12699793 TCTTCCCTAA
12699803 CACTTGTATCAATAAAATAT
1 CACTTGTATCAATAAAATAT
12699823 CACTTGTATCAATAAAATAT
1 CACTTGTATCAATAAAATAT
12699843 CA
1 CA
12699845 AGTTTATACT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.45, C:0.17, G:0.05, T:0.33
Consensus pattern (20 bp):
CACTTGTATCAATAAAATAT
Found at i:12703980 original size:22 final size:21
Alignment explanation
Indices: 12703952--12703994 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 21
12703942 AGTTACCGGC
12703952 TGCCTCGTCATCTGAAAACAT
1 TGCCTCGTCATCTGAAAACAT
*
12703973 NTGCCTCGTGATCTGAAAACAT
1 -TGCCTCGTCATCTGAAAACAT
12703995 GAATTTGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.28
Consensus pattern (21 bp):
TGCCTCGTCATCTGAAAACAT
Found at i:12704835 original size:8 final size:8
Alignment explanation
Indices: 12704822--12704863 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
12704812 CCTATAACAC
*
12704822 ACATATTT
1 ACATATAT
12704830 ACATATAT
1 ACATATAT
*
12704838 ATATATAT
1 ACATATAT
*
12704846 ATATATAT
1 ACATATAT
12704854 ACATATAT
1 ACATATAT
12704862 AC
1 AC
12704864 CCATTATCAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 31 1.00
ACGTcount: A:0.48, C:0.10, G:0.00, T:0.43
Consensus pattern (8 bp):
ACATATAT
Found at i:12704837 original size:2 final size:2
Alignment explanation
Indices: 12704832--12704862 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
12704822 ACATATTTAC
*
12704832 AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
12704863 CCCATTATCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:12704982 original size:43 final size:43
Alignment explanation
Indices: 12704908--12705017 Score: 107
Period size: 43 Copynumber: 2.6 Consensus size: 43
12704898 TCACCAGCTC
* * * ** * *
12704908 ATGCGCACTCCTTACTCACACATGGCTGGGTCATCAC-CGGGTT
1 ATGCGTACTCCCTACTCGCACATAACCGGGTCATC-CTCGGCTT
12704951 ATGCGTACTCCCTACTCGCACATAACCGGGTCATCCTCGGCTT
1 ATGCGTACTCCCTACTCGCACATAACCGGGTCATCCTCGGCTT
* *
12704994 ATGCGCT-CCCCCTACTCGTACATA
1 ATGCG-TACTCCCTACTCGCACATA
12705018 GCTGAGTCAA
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
42 1 0.02
43 54 0.96
44 1 0.02
ACGTcount: A:0.19, C:0.36, G:0.19, T:0.25
Consensus pattern (43 bp):
ATGCGTACTCCCTACTCGCACATAACCGGGTCATCCTCGGCTT
Found at i:12705847 original size:19 final size:20
Alignment explanation
Indices: 12705813--12705850 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
12705803 AAAGAAGACC
12705813 AGCTGCTAGAAAATTCAAGA
1 AGCTGCTAGAAAATTCAAGA
*
12705833 AGCTGCT-GGAAATTCAAG
1 AGCTGCTAGAAAATTCAAG
12705851 GTATTTATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.39, C:0.16, G:0.24, T:0.21
Consensus pattern (20 bp):
AGCTGCTAGAAAATTCAAGA
Found at i:12706362 original size:39 final size:38
Alignment explanation
Indices: 12706248--12706385 Score: 105
Period size: 34 Copynumber: 3.8 Consensus size: 38
12706238 GGGGTCTCAC
* *
12706248 ATATATGCCTTGTGCGGTGTGGAAGTGCACATGATGGTG
1 ATATATGCC-TGTGCGGTGTGGGAGTGCACATGACGGTG
* * * * *
12706287 ATA-GTGGC-GTGC--TGTGTGAGTGCACA-CACTGATG
1 ATATATGCCTGTGCGGTGTGGGAGTGCACATGAC-GGTG
12706321 ATATATGCCATGTGCGGTGTGGGAGTGCACATGACGGTG
1 ATATATGCC-TGTGCGGTGTGGGAGTGCACATGACGGTG
* *
12706360 ATA-ATG-GTGTGC--TGTGTGAGTGCACA
1 ATATATGCCTGTGCGGTGTGGGAGTGCACA
12706386 CACTAATGAT
Statistics
Matches: 78, Mismatches: 14, Indels: 19
0.70 0.13 0.17
Matches are distributed among these distances:
33 1 0.01
34 31 0.40
35 3 0.04
36 9 0.12
37 4 0.05
38 6 0.08
39 22 0.28
40 2 0.03
ACGTcount: A:0.21, C:0.14, G:0.36, T:0.28
Consensus pattern (38 bp):
ATATATGCCTGTGCGGTGTGGGAGTGCACATGACGGTG
Found at i:12706372 original size:73 final size:73
Alignment explanation
Indices: 12706248--12706425 Score: 266
Period size: 73 Copynumber: 2.4 Consensus size: 73
12706238 GGGGTCTCAC
* * *
12706248 ATATATGCCTTGTGCGGTGTGGAAGTGCACATGATGGTGATAGTGGCGTGCTGTGTGAGTGCACA
1 ATATATGCCTTGTGCGGTGTGGGAGTGCACATGACGGTGATAATGGCGTGCTGTGTGAGTGCACA
*
12706313 CACTGATG
66 CACTAATG
* *
12706321 ATATATGCCATGTGCGGTGTGGGAGTGCACATGACGGTGATAATGGTGTGCTGTGTGAGTGCACA
1 ATATATGCCTTGTGCGGTGTGGGAGTGCACATGACGGTGATAATGGCGTGCTGTGTGAGTGCACA
12706386 CACTAATG
66 CACTAATG
* **
12706394 ATATATTACCTTGTGTAGTGTGGGAGTGCACA
1 ATATA-TGCCTTGTGCGGTGTGGGAGTGCACA
12706426 GGATGATTCT
Statistics
Matches: 94, Mismatches: 10, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
73 72 0.77
74 22 0.23
ACGTcount: A:0.22, C:0.15, G:0.34, T:0.29
Consensus pattern (73 bp):
ATATATGCCTTGTGCGGTGTGGGAGTGCACATGACGGTGATAATGGCGTGCTGTGTGAGTGCACA
CACTAATG
Found at i:12711961 original size:40 final size:40
Alignment explanation
Indices: 12711917--12712000 Score: 116
Period size: 40 Copynumber: 2.1 Consensus size: 40
12711907 AGCAGAAAGT
12711917 CATTCTCGCTGCGGTC-AAATTTCTCGCTGCAGCAAGATTG
1 CATTCTCGCTGCGG-CAAAATTTCTCGCTGCAGCAAGATTG
* * * *
12711957 CATTCTTGTTGCGGCAAAATTTCTCGTTGCAGCGAGATTG
1 CATTCTCGCTGCGGCAAAATTTCTCGCTGCAGCAAGATTG
12711997 CATT
1 CATT
12712001 ATCACCGTAT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
39 1 0.03
40 38 0.97
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.33
Consensus pattern (40 bp):
CATTCTCGCTGCGGCAAAATTTCTCGCTGCAGCAAGATTG
Found at i:12712430 original size:38 final size:38
Alignment explanation
Indices: 12712340--12712430 Score: 119
Period size: 38 Copynumber: 2.4 Consensus size: 38
12712330 ACGCACAAGG
* *
12712340 CAATATCATCATTATGTGCTCTCCTTACTCGCACATTT
1 CAATATCATCATCATGTGCTCTCCCTACTCGCACATTT
* * * *
12712378 CCACATTATCATCATGTGCTCTCCCTACTCTCACATTT
1 CAATATCATCATCATGTGCTCTCCCTACTCGCACATTT
*
12712416 CAATATCATTATCAT
1 CAATATCATCATCAT
12712431 CATCACAATG
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
38 43 1.00
ACGTcount: A:0.25, C:0.31, G:0.05, T:0.38
Consensus pattern (38 bp):
CAATATCATCATCATGTGCTCTCCCTACTCGCACATTT
Found at i:12716559 original size:37 final size:37
Alignment explanation
Indices: 12716509--12716628 Score: 172
Period size: 37 Copynumber: 3.2 Consensus size: 37
12716499 AATGCAATAT
*
12716509 CATCATCATGTGTGCACTCCCTATTCGCACAC-TCTAA
1 CATCATCACGTGTGCACTCCCTATTCGCACACTTC-AA
*
12716546 CATCATCACGTGTGCACTCCCTACTCGCACACTTCAA
1 CATCATCACGTGTGCACTCCCTATTCGCACACTTCAA
* *
12716583 CATCATCATGTGTGCACTCCTTATTTC-CACACTTCAA
1 CATCATCACGTGTGCACTCCCTA-TTCGCACACTTCAA
12716620 CATCATCAC
1 CATCATCAC
12716629 ACAATATTAT
Statistics
Matches: 75, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
37 71 0.95
38 4 0.05
ACGTcount: A:0.25, C:0.37, G:0.09, T:0.29
Consensus pattern (37 bp):
CATCATCACGTGTGCACTCCCTATTCGCACACTTCAA
Found at i:12718635 original size:42 final size:42
Alignment explanation
Indices: 12718540--12718635 Score: 95
Period size: 42 Copynumber: 2.3 Consensus size: 42
12718530 GCACATGGCT
* * * * *
12718540 GGGTCAACATCGGCTTATGCGCACTCTTACTCGCACATAACC
1 GGGTCCACATCAGCGTATGCGCACACCTACTCGCACATAACC
* * **
12718582 TGAT-CATCATCAGCGTATGCGCACACCTACTCGCACATAGTC
1 GGGTCCA-CATCAGCGTATGCGCACACCTACTCGCACATAACC
12718624 GGGTCCACATCA
1 GGGTCCACATCA
12718636 ACATATGAAA
Statistics
Matches: 41, Mismatches: 11, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
41 1 0.02
42 38 0.93
43 2 0.05
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (42 bp):
GGGTCCACATCAGCGTATGCGCACACCTACTCGCACATAACC
Found at i:12723400 original size:83 final size:83
Alignment explanation
Indices: 12723304--12723485 Score: 301
Period size: 83 Copynumber: 2.2 Consensus size: 83
12723294 GGTAGTGTAC
** *
12723304 AGTGTGGGAGTGCACACGTCGAAGATTTATTTCATGGACGGTGTGGGAGAGCACATGATGCTGAT
1 AGTGTGGGAGTGCACACGTCGAAGATTTATGCCATGGACGATGTGGGAGAGCACATGATGCTGAT
12723369 GATGATATTGTAATGTGT
66 GATGATATTGTAATGTGT
* * * *
12723387 AGTGTGGGAGTGCACACGTCTATGATTTATGCCATGGGCGATGTGGGATAGCACATGATGCTGAT
1 AGTGTGGGAGTGCACACGTCGAAGATTTATGCCATGGACGATGTGGGAGAGCACATGATGCTGAT
12723452 GATGATATTGTAATGTGT
66 GATGATATTGTAATGTGT
12723470 AGTGTGGGAGTGCACA
1 AGTGTGGGAGTGCACA
12723486 TGATGACCTA
Statistics
Matches: 92, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
83 92 1.00
ACGTcount: A:0.25, C:0.12, G:0.34, T:0.30
Consensus pattern (83 bp):
AGTGTGGGAGTGCACACGTCGAAGATTTATGCCATGGACGATGTGGGAGAGCACATGATGCTGAT
GATGATATTGTAATGTGT
Found at i:12723476 original size:44 final size:44
Alignment explanation
Indices: 12723344--12723490 Score: 164
Period size: 44 Copynumber: 3.5 Consensus size: 44
12723334 TTCATGGACG
*
12723344 GTGTGGGAGAGCACATGATGCTGATGATGATATTGTAATGTGTA
1 GTGTGGGAGTGCACATGATGCTGATGATGATATTGTAATGTGTA
* * ** **
12723388 GTGTGGGAGTGCACACG-T-CT-ATGAT-TTA-TGCCATG-GGC
1 GTGTGGGAGTGCACATGATGCTGATGATGATATTGTAATGTGTA
12723426 GATGTGGGA-TAGCACATGATGCTGATGATGATATTGTAATGTGTA
1 G-TGTGGGAGT-GCACATGATGCTGATGATGATATTGTAATGTGTA
12723471 GTGTGGGAGTGCACATGATG
1 GTGTGGGAGTGCACATGATG
12723491 ACCTAGCTAT
Statistics
Matches: 81, Mismatches: 13, Indels: 18
0.72 0.12 0.16
Matches are distributed among these distances:
38 3 0.04
39 18 0.22
40 3 0.04
41 7 0.09
42 7 0.09
43 3 0.04
44 37 0.46
45 3 0.04
ACGTcount: A:0.24, C:0.10, G:0.35, T:0.31
Consensus pattern (44 bp):
GTGTGGGAGTGCACATGATGCTGATGATGATATTGTAATGTGTA
Found at i:12724921 original size:23 final size:23
Alignment explanation
Indices: 12724894--12724938 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
12724884 ATGGCATGAT
12724894 AAAAAGAAAATGCCAGAAGTTAC
1 AAAAAGAAAATGCCAGAAGTTAC
12724917 AAAAAGAAAATGCCAGAAGTTA
1 AAAAAGAAAATGCCAGAAGTTA
12724939 GGCACCTTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.58, C:0.11, G:0.18, T:0.13
Consensus pattern (23 bp):
AAAAAGAAAATGCCAGAAGTTAC
Found at i:12739872 original size:35 final size:34
Alignment explanation
Indices: 12739833--12739942 Score: 111
Period size: 35 Copynumber: 3.2 Consensus size: 34
12739823 CTAGGCTTGG
12739833 CCAAAACCTTTCACAATGGTTTTTACTGGGATCAA
1 CCAAAACCTTTCACAATGGTTTTT-CTGGGATCAA
***
12739868 CCAAAACC---CA-AAGTGGTTTTTCAAAGACTCAA
1 CCAAAACCTTTCACAA-TGGTTTTTCTGGGA-TCAA
* *
12739900 CCACAACCTTTCACAATGGTTTTTCATGGGCTCAA
1 CCAAAACCTTTCACAATGGTTTTTC-TGGGATCAA
12739935 CCAAAACC
1 CCAAAACC
12739943 AAAAGTGGTT
Statistics
Matches: 59, Mismatches: 9, Indels: 14
0.72 0.11 0.17
Matches are distributed among these distances:
31 5 0.08
32 21 0.36
35 30 0.51
36 3 0.05
ACGTcount: A:0.34, C:0.27, G:0.13, T:0.26
Consensus pattern (34 bp):
CCAAAACCTTTCACAATGGTTTTTCTGGGATCAA
Found at i:12739921 original size:67 final size:67
Alignment explanation
Indices: 12739837--12740012 Score: 259
Period size: 67 Copynumber: 2.6 Consensus size: 67
12739827 GCTTGGCCAA
12739837 AACCTTTCACAATGGTTTTTACTGGGATCAACCAAAACCCAAAGTGGTTTTTCAAAGACTCAACC
1 AACCTTTCACAATGGTTTTTACTGGGATCAACCAAAACCCAAAGTGGTTTTTCAAAGACTCAACC
12739902 AC
66 AC
* * *
12739904 AACCTTTCACAATGGTTTTT-CATGGGCTCAACCAAAACCAAAAGTGGTTTTTCAAAGGCTCAAC
1 AACCTTTCACAATGGTTTTTAC-TGGGATCAACCAAAACCCAAAGTGGTTTTTCAAAGACTCAAC
12739968 CAC
65 CAC
* *
12739971 AACC-TACAATAATGGTTTTTCAC-GGGATCAACCAAAACCCAA
1 AACCTTTC-ACAATGGTTTTT-ACTGGGATCAACCAAAACCCAA
12740013 CAACTAACTT
Statistics
Matches: 98, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
66 3 0.03
67 94 0.96
69 1 0.01
ACGTcount: A:0.35, C:0.26, G:0.14, T:0.26
Consensus pattern (67 bp):
AACCTTTCACAATGGTTTTTACTGGGATCAACCAAAACCCAAAGTGGTTTTTCAAAGACTCAACC
AC
Found at i:12739987 original size:35 final size:34
Alignment explanation
Indices: 12739864--12739992 Score: 131
Period size: 32 Copynumber: 3.9 Consensus size: 34
12739854 TTTACTGGGA
* * *
12739864 TCAACCAAAACC--CAAAGTGGTTTTTCAAAGAC
1 TCAACCACAACCTACAAAATGGTTTTTCAAAGGC
* * **
12739896 TCAACCACAACCTTTCACAATGGTTTTTCATGGGC
1 TCAACCACAACC-TACAAAATGGTTTTTCAAAGGC
* *
12739931 TCAACCAAAACC-A-AAAGTGGTTTTTCAAAGGC
1 TCAACCACAACCTACAAAATGGTTTTTCAAAGGC
12739963 TCAACCACAACCTACAATAATGGTTTTTCA
1 TCAACCACAACCTACAA-AATGGTTTTTCA
12739993 CGGGATCAAC
Statistics
Matches: 77, Mismatches: 14, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
32 37 0.48
33 1 0.01
34 2 0.03
35 37 0.48
ACGTcount: A:0.36, C:0.26, G:0.12, T:0.26
Consensus pattern (34 bp):
TCAACCACAACCTACAAAATGGTTTTTCAAAGGC
Found at i:12740002 original size:35 final size:33
Alignment explanation
Indices: 12739847--12740009 Score: 127
Period size: 35 Copynumber: 4.9 Consensus size: 33
12739837 AACCTTTCAC
12739847 AATGGTTTTT-ACTGGGATCAACCAAAACC-CAA
1 AATGGTTTTTCAC-GGGATCAACCAAAACCACAA
* ** * * *
12739879 AGTGGTTTTTCA-AAGACTCAACCACAACCTTTCAC
1 AATGGTTTTTCACGGGA-TCAACCAAAACC--ACAA
* *
12739914 AATGGTTTTTCATGGGCTCAACCAAAACCA-AA
1 AATGGTTTTTCACGGGATCAACCAAAACCACAA
* ** * *
12739946 AGTGGTTTTTCAAAGGCTCAACCACAACCTACAA
1 AATGGTTTTTCACGGGATCAACCAAAACC-ACAA
12739980 TAATGGTTTTTCACGGGATCAACCAAAACC
1 -AATGGTTTTTCACGGGATCAACCAAAACC
12740010 CAACAACTAA
Statistics
Matches: 101, Mismatches: 21, Indels: 15
0.74 0.15 0.11
Matches are distributed among these distances:
31 2 0.02
32 46 0.46
33 2 0.02
34 2 0.02
35 48 0.48
36 1 0.01
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.26
Consensus pattern (33 bp):
AATGGTTTTTCACGGGATCAACCAAAACCACAA
Found at i:12741033 original size:14 final size:14
Alignment explanation
Indices: 12741014--12741041 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
12741004 TGCATAAATG
12741014 TAAAGTGATTTACA
1 TAAAGTGATTTACA
12741028 TAAAGTGATTTACA
1 TAAAGTGATTTACA
12741042 GCAGGTGAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.14, T:0.36
Consensus pattern (14 bp):
TAAAGTGATTTACA
Found at i:12748141 original size:19 final size:20
Alignment explanation
Indices: 12748113--12748153 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
12748103 TTAATGAGAC
*
12748113 AAAATGCTC-TTAGTTGACT
1 AAAATGCTCTTTAGTCGACT
*
12748132 AAAATTCTCTTTAGTCGACT
1 AAAATGCTCTTTAGTCGACT
12748152 AA
1 AA
12748154 GTGCTTTCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.34, C:0.17, G:0.12, T:0.37
Consensus pattern (20 bp):
AAAATGCTCTTTAGTCGACT
Found at i:12753857 original size:32 final size:32
Alignment explanation
Indices: 12753820--12753929 Score: 134
Period size: 31 Copynumber: 3.4 Consensus size: 32
12753810 TTTACCGATA
12753820 TCAACCAAAACCCAAAGTGGTTTTTCAAAGGC
1 TCAACCAAAACCCAAAGTGGTTTTTCAAAGGC
* **
12753852 TCAACCACAACCTTTCACAA-TGGTTTTTCACGGGC
1 TCAACCAAAACC---CA-AAGTGGTTTTTCAAAGGC
12753887 TCAA-CAAAACCCAAAGTGGTTTTTCAAAGGC
1 TCAACCAAAACCCAAAGTGGTTTTTCAAAGGC
*
12753918 TCAACCACAACC
1 TCAACCAAAACC
12753930 TATAATAATG
Statistics
Matches: 65, Mismatches: 7, Indels: 12
0.77 0.08 0.14
Matches are distributed among these distances:
30 2 0.03
31 19 0.29
32 17 0.26
34 6 0.09
35 19 0.29
36 2 0.03
ACGTcount: A:0.35, C:0.29, G:0.14, T:0.23
Consensus pattern (32 bp):
TCAACCAAAACCCAAAGTGGTTTTTCAAAGGC
Found at i:12753914 original size:66 final size:67
Alignment explanation
Indices: 12753819--12753967 Score: 246
Period size: 66 Copynumber: 2.2 Consensus size: 67
12753809 TTTTACCGAT
* * *
12753819 ATCAACCAAAACCCAAAGTGGTTTTTCAAAGGCTCAACCACAACCTTTCACAATGGTTTTTCACG
1 ATCAACCAAAACCCAAAGTGGTTTTTCAAAGGCTCAACCACAACCTATAACAATGGTTTCTCACG
12753884 GG
66 GG
* *
12753886 CTCAA-CAAAACCCAAAGTGGTTTTTCAAAGGCTCAACCACAACCTATAATAATGGTTTCTCACG
1 ATCAACCAAAACCCAAAGTGGTTTTTCAAAGGCTCAACCACAACCTATAACAATGGTTTCTCACG
12753950 GG
66 GG
12753952 ATCAACCAAAACCCAA
1 ATCAACCAAAACCCAA
12753968 CAACTAACTT
Statistics
Matches: 75, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
66 61 0.81
67 14 0.19
ACGTcount: A:0.36, C:0.28, G:0.13, T:0.23
Consensus pattern (67 bp):
ATCAACCAAAACCCAAAGTGGTTTTTCAAAGGCTCAACCACAACCTATAACAATGGTTTCTCACG
GG
Found at i:12759958 original size:17 final size:17
Alignment explanation
Indices: 12759928--12759966 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
12759918 CAAGCCAAAG
*
12759928 ATAAAAAATTTGAATAT
1 ATAAAAAATATGAATAT
12759945 -TAAAAACATATGAATAT
1 ATAAAAA-ATATGAATAT
12759962 ATAAA
1 ATAAA
12759967 CCATTTAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
16 6 0.32
17 9 0.47
18 4 0.21
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.31
Consensus pattern (17 bp):
ATAAAAAATATGAATAT
Found at i:12760471 original size:25 final size:25
Alignment explanation
Indices: 12760438--12760497 Score: 86
Period size: 25 Copynumber: 2.4 Consensus size: 25
12760428 GTGGTCACAA
12760438 CCACGTATATCAACTTGTGG-CTTAG
1 CCACGTATATCAACTTGTGGCCTT-G
* *
12760463 CCACATATATCATCTTGTGGCCTTG
1 CCACGTATATCAACTTGTGGCCTTG
12760488 CCACGTATAT
1 CCACGTATAT
12760498 ATATCACAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
25 28 0.90
26 3 0.10
ACGTcount: A:0.23, C:0.27, G:0.17, T:0.33
Consensus pattern (25 bp):
CCACGTATATCAACTTGTGGCCTTG
Found at i:12770271 original size:27 final size:28
Alignment explanation
Indices: 12770214--12770271 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
12770204 GAAAAAATGT
*
12770214 CCTGGTGGTGGAAAATTACAATTTTGTC
1 CCTGGTGGTGGAAAATTACAATTTTGAC
*
12770242 CCTGG-GGTGGCAAAATTACCATTTT-AC
1 CCTGGTGGTGG-AAAATTACAATTTTGAC
12770269 CCT
1 CCT
12770272 TTTACTCTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
27 9 0.33
28 18 0.67
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.33
Consensus pattern (28 bp):
CCTGGTGGTGGAAAATTACAATTTTGAC
Found at i:12770342 original size:20 final size:20
Alignment explanation
Indices: 12770325--12770362 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
12770315 CCTCAAATCT
12770325 TACTCCAATAAGTCAAATTA
1 TACTCCAATAAGTCAAATTA
12770345 TACTCCAATAAGTCAAAT
1 TACTCCAATAAGTCAAAT
12770363 GGGGCCAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.45, C:0.21, G:0.05, T:0.29
Consensus pattern (20 bp):
TACTCCAATAAGTCAAATTA
Found at i:12787623 original size:20 final size:20
Alignment explanation
Indices: 12787598--12787643 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
12787588 TTTTGACCCC
12787598 ATTTGACTTATTGGAGTATA
1 ATTTGACTTATTGGAGTATA
*
12787618 ATTTGACTTATTGGAGTATG
1 ATTTGACTTATTGGAGTATA
12787638 ATTTGA
1 ATTTGA
12787644 GGTTTAGATG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.28, C:0.04, G:0.22, T:0.46
Consensus pattern (20 bp):
ATTTGACTTATTGGAGTATA
Found at i:12792888 original size:19 final size:19
Alignment explanation
Indices: 12792864--12792900 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
12792854 CCATTTGACT
12792864 TATTGGAGTATGATTTGAG
1 TATTGGAGTATGATTTGAG
12792883 TATTGGAGTATGATTTGA
1 TATTGGAGTATGATTTGA
12792901 AGTTTAGAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.27, C:0.00, G:0.30, T:0.43
Consensus pattern (19 bp):
TATTGGAGTATGATTTGAG
Found at i:12800482 original size:31 final size:33
Alignment explanation
Indices: 12800430--12800495 Score: 100
Period size: 31 Copynumber: 2.1 Consensus size: 33
12800420 CTTCTCCATT
*
12800430 TTTCCTATTTGGGCTAAGCCCATTTATTTT-TA
1 TTTCCTATTTGGGCCAAGCCCATTTATTTTCTA
*
12800462 TTTCCTA-TTGGGCCATGCCCATTTATTTTCTA
1 TTTCCTATTTGGGCCAAGCCCATTTATTTTCTA
12800494 TT
1 TT
12800496 GGGTCATGCC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
31 20 0.65
32 11 0.35
ACGTcount: A:0.17, C:0.21, G:0.12, T:0.50
Consensus pattern (33 bp):
TTTCCTATTTGGGCCAAGCCCATTTATTTTCTA
Found at i:12800515 original size:25 final size:25
Alignment explanation
Indices: 12800458--12800517 Score: 102
Period size: 25 Copynumber: 2.4 Consensus size: 25
12800448 CCCATTTATT
*
12800458 TTTATTTCCTATTGGGCCATGCCCA
1 TTTATTTTCTATTGGGCCATGCCCA
*
12800483 TTTATTTTCTATTGGGTCATGCCCA
1 TTTATTTTCTATTGGGCCATGCCCA
12800508 TTTATTTTCT
1 TTTATTTTCT
12800518 TTTTCTCTCT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.15, C:0.22, G:0.13, T:0.50
Consensus pattern (25 bp):
TTTATTTTCTATTGGGCCATGCCCA
Found at i:12800522 original size:31 final size:30
Alignment explanation
Indices: 12800428--12800523 Score: 85
Period size: 31 Copynumber: 3.3 Consensus size: 30
12800418 GGCTTCTCCA
* * *
12800428 TTTTTCCTATTTGGGCTAAGCCCATTTATTT
1 TTTTTTCTA-TTGGGCCATGCCCATTTATTT
*
12800459 TTATTTCCTATTGGGCCATGCCCATTTA---
1 TT-TTTTCTATTGGGCCATGCCCATTTATTT
*
12800487 --TTTTCTATTGGGTCATGCCCATTTATTT
1 TTTTTTCTATTGGGCCATGCCCATTTATTT
12800515 TCTTTTTCT
1 T-TTTTTCT
12800524 CTCTTCCATG
Statistics
Matches: 54, Mismatches: 4, Indels: 14
0.75 0.06 0.19
Matches are distributed among these distances:
25 23 0.43
31 24 0.44
32 7 0.13
ACGTcount: A:0.15, C:0.21, G:0.12, T:0.52
Consensus pattern (30 bp):
TTTTTTCTATTGGGCCATGCCCATTTATTT
Found at i:12800763 original size:34 final size:33
Alignment explanation
Indices: 12800725--12800801 Score: 82
Period size: 34 Copynumber: 2.3 Consensus size: 33
12800715 CACAAGGCTG
12800725 TCCAATTTTCCTCCACAAACTACTAGCAAACAGC
1 TCCAATTTT-CTCCACAAACTACTAGCAAACAGC
* * * * *
12800759 TCCAAGTTTTTTGCACGAATTAGTAGCAAACAGC
1 TCCAA-TTTTCTCCACAAACTACTAGCAAACAGC
*
12800793 TCAAATTTT
1 TCCAATTTT
12800802 TAGCAGCCAA
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
33 4 0.11
34 28 0.78
35 4 0.11
ACGTcount: A:0.34, C:0.26, G:0.10, T:0.30
Consensus pattern (33 bp):
TCCAATTTTCTCCACAAACTACTAGCAAACAGC
Found at i:12812204 original size:22 final size:23
Alignment explanation
Indices: 12812170--12812213 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
12812160 TTACCTTTTT
*
12812170 CACTTGTTTCCTTGAATTTTTCA
1 CACTTGTTCCCTTGAATTTTTCA
*
12812193 CACTT-TTCCCTTGACTTTTTC
1 CACTTGTTCCCTTGAATTTTTC
12812214 TACCTAGGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.14, C:0.27, G:0.07, T:0.52
Consensus pattern (23 bp):
CACTTGTTCCCTTGAATTTTTCA
Found at i:12834005 original size:39 final size:39
Alignment explanation
Indices: 12833915--12834096 Score: 129
Period size: 39 Copynumber: 4.6 Consensus size: 39
12833905 TTAACTTAAT
* * * * *
12833915 TCATGTGCACTCCCACACCGCACATAGC-TA-AT-ATCG
1 TCATGTGCTCCCCCACACCACACATGGCATATATCATCA
* * * * *
12833951 TCATGTTCACTCCCACACCACACATGGCAAACATCATCA
1 TCATGTGCTCCCCCACACCACACATGGCATATATCATCA
12833990 TCATGTGCTCCCCCACA-CAGCACATGGCATATATCATCA
1 TCATGTGCTCCCCCACACCA-CACATGGCATATATCATCA
* * *
12834029 TTATATGCTCTTCTCTCCCACACCGCACATGGCATATATCATCA
1 TCATGTG--C-TC-C-CCCACACCACACATGGCATATATCATCA
* * * *
12834073 GCGTGTGCTCTCCCACACCGCACA
1 TCATGTGCTCCCCCACACCACACA
12834097 CTACCAGCGC
Statistics
Matches: 118, Mismatches: 18, Indels: 17
0.77 0.12 0.11
Matches are distributed among these distances:
36 25 0.21
37 1 0.01
38 4 0.03
39 52 0.44
41 3 0.03
42 3 0.03
43 1 0.01
44 28 0.24
45 1 0.01
ACGTcount: A:0.27, C:0.37, G:0.12, T:0.24
Consensus pattern (39 bp):
TCATGTGCTCCCCCACACCACACATGGCATATATCATCA
Found at i:12834082 original size:44 final size:43
Alignment explanation
Indices: 12833960--12834083 Score: 139
Period size: 44 Copynumber: 3.0 Consensus size: 43
12833950 GTCATGTTCA
* * *
12833960 CTCCCACACCACACATGGCAAACATCATCATCATGTG--C-TC
1 CTCCCACACCGCACATGGCATATATCATCATCATGTGCTCTTC
* * *
12834000 C-CCCACACAGCACATGGCATATATCATCATTATATGCTCTTC
1 CTCCCACACCGCACATGGCATATATCATCATCATGTGCTCTTC
* *
12834042 TCTCCCACACCGCACATGGCATATATCATCAGCGTGTGCTCT
1 -CTCCCACACCGCACATGGCATATATCATCATCATGTGCTCT
12834084 CCCACACCGC
Statistics
Matches: 68, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
39 29 0.43
40 1 0.01
41 1 0.01
42 2 0.03
43 1 0.01
44 34 0.50
ACGTcount: A:0.27, C:0.36, G:0.12, T:0.25
Consensus pattern (43 bp):
CTCCCACACCGCACATGGCATATATCATCATCATGTGCTCTTC
Found at i:12835031 original size:19 final size:21
Alignment explanation
Indices: 12834991--12835036 Score: 69
Period size: 20 Copynumber: 2.3 Consensus size: 21
12834981 ATCAAGAATC
*
12834991 AAGAGAAGAAAGAAAAGGGAA
1 AAGAGAAGAAAGAAAAGAGAA
12835012 AAGA-AAGAAAGAAAA-AGAA
1 AAGAGAAGAAAGAAAAGAGAA
12835031 AAGAGA
1 AAGAGA
12835037 TCGGCTTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 7 0.30
20 12 0.52
21 4 0.17
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (21 bp):
AAGAGAAGAAAGAAAAGAGAA
Done.