Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39371879
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2227820 characters in sequence are not A, C, G, or T
File 38 of 103
Found at i:14302057 original size:28 final size:28
Alignment explanation
Indices: 14301999--14302057 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
14301989 CGGTTGTGAC
* * **
14301999 TTTTCTTTTTTTTCTCTTTTTATTTCTT
1 TTTTATTTCTTTTCTCTTTTTAACTCTT
14302027 TTTTATTTCTTTTCTCTCTTTTAACTCTT
1 TTTTATTTCTTTTCTCT-TTTTAACTCTT
14302056 TT
1 TT
14302058 GGCTCCTTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
28 15 0.58
29 11 0.42
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.76
Consensus pattern (28 bp):
TTTTATTTCTTTTCTCTTTTTAACTCTT
Found at i:14302336 original size:21 final size:20
Alignment explanation
Indices: 14302311--14302352 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
14302301 CTTTCTTCCC
*
14302311 ATATATTTATATTATTATATT
1 ATATATATATATT-TTATATT
*
14302332 ATATATATATATTTTTTATT
1 ATATATATATATTTTATATT
14302352 A
1 A
14302353 ACTTCAATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
ATATATATATATTTTATATT
Found at i:14302733 original size:19 final size:18
Alignment explanation
Indices: 14302706--14302743 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
14302696 TTAATATTTT
*
14302706 AATATTATTTTATTCATAA
1 AATAATATTTTATTC-TAA
14302725 AATAATATTTTATTCTAA
1 AATAATATTTTATTCTAA
14302743 A
1 A
14302744 TTATTTTTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (18 bp):
AATAATATTTTATTCTAA
Found at i:14310945 original size:29 final size:28
Alignment explanation
Indices: 14310900--14311041 Score: 176
Period size: 28 Copynumber: 4.9 Consensus size: 28
14310890 GGCAGCTTTG
*
14310900 ACATGTTTGTCTTAATTTAGAGAAGAAA
1 ACATGTTTGTCTTAATTTAGACAAGAAA
14310928 ACATGTTTGGTCTTAATTTAGACAAGAAA
1 ACATGTTT-GTCTTAATTTAGACAAGAAA
*
14310957 ATATGTTTGTCTTAATTTAGGACAAGAAAA
1 ACATGTTTGTCTTAATTTA-GACAAG-AAA
* * * *
14310987 ATATTTTTTGTCTTAACTTAGTCAAGAAA
1 ACA-TGTTTGTCTTAATTTAGACAAGAAA
* *
14311016 ACATATTTGTCTCAATTTAGACAAGA
1 ACATGTTTGTCTTAATTTAGACAAGA
14311042 TAAAATATAT
Statistics
Matches: 100, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
28 38 0.38
29 37 0.37
30 11 0.11
31 14 0.14
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.37
Consensus pattern (28 bp):
ACATGTTTGTCTTAATTTAGACAAGAAA
Found at i:14311025 original size:59 final size:58
Alignment explanation
Indices: 14310900--14311055 Score: 197
Period size: 59 Copynumber: 2.7 Consensus size: 58
14310890 GGCAGCTTTG
* * * * *
14310900 ACATGTTTGTCTTAATTTAGAGAAG-AAAACATGTTTGGTCTTAATTTAGACAAGAAA
1 ACATGTTTGTCTTAATTTAGACAAGAAAAATATTTTTTGTCTTAACTTAGACAAGAAA
* *
14310957 ATATGTTTGTCTTAATTTAGGACAAGAAAAATATTTTTTGTCTTAACTTAGTCAAGAAA
1 ACATGTTTGTCTTAATTTA-GACAAGAAAAATATTTTTTGTCTTAACTTAGACAAGAAA
* *
14311016 ACATATTTGTCTCAATTTAGACAAGATAAAATATATTTTT
1 ACATGTTTGTCTTAATTTAGACAAGA-AAAATAT-TTTTT
14311056 TATCTTAATT
Statistics
Matches: 85, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
57 18 0.21
58 12 0.14
59 50 0.59
60 5 0.06
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.39
Consensus pattern (58 bp):
ACATGTTTGTCTTAATTTAGACAAGAAAAATATTTTTTGTCTTAACTTAGACAAGAAA
Found at i:14311239 original size:17 final size:17
Alignment explanation
Indices: 14311217--14311249 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
14311207 ATAATAATAA
14311217 AATAA-GAGTTATTATTC
1 AATAAGGAGTT-TTATTC
14311234 AATAAGGAGTTTTATT
1 AATAAGGAGTTTTATT
14311250 TTATCAAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.39, C:0.03, G:0.15, T:0.42
Consensus pattern (17 bp):
AATAAGGAGTTTTATTC
Found at i:14313149 original size:20 final size:20
Alignment explanation
Indices: 14313124--14313161 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
14313114 AAAGCTCAGC
*
14313124 GCTTTAATTGATGAAAGTTG
1 GCTTTAATCGATGAAAGTTG
*
14313144 GCTTTAATCGATTAAAGT
1 GCTTTAATCGATGAAAGT
14313162 GAATTTAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (20 bp):
GCTTTAATCGATGAAAGTTG
Found at i:14315180 original size:40 final size:42
Alignment explanation
Indices: 14315105--14315214 Score: 120
Period size: 40 Copynumber: 2.6 Consensus size: 42
14315095 TCATTCATTG
* *
14315105 TCATGTGCACTCTCTACTCACACAT--TTCAACGTCATCA-GT
1 TCATGTGCACTCCCTACTCACACATAGTT-AACGTCATCACGC
**
14315145 TCATGTGCACTCCCTACTCACACATAGTT-GGGTCATCATCGGC
1 TCATGTGCACTCCCTACTCACACATAGTTAACGTCATCA-C-GC
*
14315188 TCATGTGTACTCCCTACTCACACATAG
1 TCATGTGCACTCCCTACTCACACATAG
14315215 CCGNNNNNNN
Statistics
Matches: 60, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
40 31 0.52
42 2 0.03
43 27 0.45
ACGTcount: A:0.24, C:0.33, G:0.14, T:0.30
Consensus pattern (42 bp):
TCATGTGCACTCCCTACTCACACATAGTTAACGTCATCACGC
Found at i:14319712 original size:21 final size:22
Alignment explanation
Indices: 14319686--14319727 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
14319676 ACCCTAGGTG
*
14319686 GAAAATTTAAGGGAA-AAGTGT
1 GAAAATTCAAGGGAACAAGTGT
14319707 GAAAATTCAAGGGAACAAGTG
1 GAAAATTCAAGGGAACAAGTG
14319728 AAAAAGGTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.48, C:0.05, G:0.29, T:0.19
Consensus pattern (22 bp):
GAAAATTCAAGGGAACAAGTGT
Found at i:14319730 original size:20 final size:20
Alignment explanation
Indices: 14319681--14319731 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
14319671 ACAAAACCCT
*
14319681 AGGTGGAAAATTTAAGGGAAA
1 AGGT-GAAAATTCAAGGGAAA
14319702 AGTGTGAAAATTCAAGGGAACA
1 AG-GTGAAAATTCAAGGGAA-A
14319724 A-GTGAAAA
1 AGGTGAAAA
14319732 AGGTAAGATT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
20 7 0.26
21 16 0.59
22 4 0.15
ACGTcount: A:0.49, C:0.04, G:0.29, T:0.18
Consensus pattern (20 bp):
AGGTGAAAATTCAAGGGAAA
Found at i:14322530 original size:15 final size:14
Alignment explanation
Indices: 14322510--14322541 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
14322500 AAACCAAGCT
14322510 TTTTCTTTCTTTCTC
1 TTTTCTTTCTTTC-C
14322525 TTTTCTTTCTTTCC
1 TTTTCTTTCTTTCC
14322539 TTT
1 TTT
14322542 CTCCTTCCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (14 bp):
TTTTCTTTCTTTCC
Found at i:14332242 original size:59 final size:59
Alignment explanation
Indices: 14332176--14332289 Score: 192
Period size: 59 Copynumber: 1.9 Consensus size: 59
14332166 AGAAAATATC
*
14332176 TTGTGGCTGGAGATAAGAACTAGCCATGGGACAAGAATGAAGAGTCAAAGCTTCCAAAT
1 TTGTGGCTGGAGATAAGAACCAGCCATGGGACAAGAATGAAGAGTCAAAGCTTCCAAAT
* * *
14332235 TTGTGGCTGGATATAAGAACCATCCATGGGATAAGAATGAAGAGTCAAAGCTTCC
1 TTGTGGCTGGAGATAAGAACCAGCCATGGGACAAGAATGAAGAGTCAAAGCTTCC
14332290 TTTGGAAGCT
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
59 51 1.00
ACGTcount: A:0.36, C:0.16, G:0.26, T:0.22
Consensus pattern (59 bp):
TTGTGGCTGGAGATAAGAACCAGCCATGGGACAAGAATGAAGAGTCAAAGCTTCCAAAT
Found at i:14346414 original size:21 final size:19
Alignment explanation
Indices: 14346388--14346428 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
14346378 AATTTAAAAC
14346388 AAAATAACATAAAATTTAACT
1 AAAATAA-ATAAAA-TTAACT
*
14346409 AAAATAAATTAAATTAACT
1 AAAATAAATAAAATTAACT
14346428 A
1 A
14346429 CTCAACATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 7 0.37
20 5 0.26
21 7 0.37
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.29
Consensus pattern (19 bp):
AAAATAAATAAAATTAACT
Found at i:14351820 original size:67 final size:67
Alignment explanation
Indices: 14351749--14351912 Score: 170
Period size: 67 Copynumber: 2.4 Consensus size: 67
14351739 TTGTTGTTGT
* * ** *
14351749 AGGTTCTAACTTAGCTTA-GAAAAGTTAGTTTTGGGTTTTTGTTGATCCC-AGAAAAATCCATTG
1 AGGTTCTAACTGAGCCTATGAAAAGCCA-TTTTGGGTTTTGGTTGATCCCGAGAAAAAT-CATTG
14351812 TTAA
64 TTAA
* ** *
14351816 AGGTTGTTGCTGAGCCTATGAAAAGCCATTTTGGGTTTTGGTTGATCCCGTGAAAAATCATTGTT
1 AGGTTCTAACTGAGCCTATGAAAAGCCATTTTGGGTTTTGGTTGATCCCGAGAAAAATCATTGTT
14351881 AA
66 AA
* ** * *
14351883 AGGTTGTGGCTGAGCTTGTGAAAAGCCATT
1 AGGTTCTAACTGAGCCTATGAAAAGCCATT
14351913 GTAAAAGCTT
Statistics
Matches: 83, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
67 69 0.83
68 14 0.17
ACGTcount: A:0.27, C:0.13, G:0.24, T:0.36
Consensus pattern (67 bp):
AGGTTCTAACTGAGCCTATGAAAAGCCATTTTGGGTTTTGGTTGATCCCGAGAAAAATCATTGTT
AA
Found at i:14351913 original size:35 final size:35
Alignment explanation
Indices: 14351801--14351919 Score: 109
Period size: 35 Copynumber: 3.5 Consensus size: 35
14351791 TGATCCCAGA
* * *
14351801 AAAATCCATTGTTAAAGGTTGTTGCTGAGCCTATG
1 AAAAGCCATTGTTAAAGGTTGTGGCTGAGCCTGTG
* * * * *
14351836 AAAAGCCATT-TT--GGGTTTTGGTTGATCCCGTG
1 AAAAGCCATTGTTAAAGGTTGTGGCTGAGCCTGTG
** *
14351868 AAAAATCATTGTTAAAGGTTGTGGCTGAGCTTGTG
1 AAAAGCCATTGTTAAAGGTTGTGGCTGAGCCTGTG
*
14351903 AAAAGCCATTGTAAAAG
1 AAAAGCCATTGTTAAAG
14351920 CTTGGTGGAA
Statistics
Matches: 62, Mismatches: 19, Indels: 6
0.71 0.22 0.07
Matches are distributed among these distances:
32 21 0.34
33 2 0.03
34 2 0.03
35 37 0.60
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (35 bp):
AAAAGCCATTGTTAAAGGTTGTGGCTGAGCCTGTG
Found at i:14353222 original size:68 final size:68
Alignment explanation
Indices: 14353127--14353383 Score: 245
Period size: 68 Copynumber: 3.8 Consensus size: 68
14353117 TACAAGCTTA
* * *
14353127 CTCATA-GGTATATGGAAAACACATCATATACATAATCTCATGGCACTCATCATGCTTTCACAAT
1 CTCATATGGTATATGGAATATACATCATATACATAATCTCATGGCATTCATCATGCTTTCACAAT
14353191 CAT
66 CAT
* * * * **
14353194 CTCATATAGTATATGGAATATACATCATATACATAATCTCATGGCATTTATCATGCATACTTAAT
1 CTCATATGGTATATGGAATATACATCATATACATAATCTCATGGCATTCATCATGCTTTCACAAT
14353259 CA-
66 CAT
* * * * * ** * *
14353261 CTTCATATGGTACATGGAATTTACTTCATATACATAATCTTATAGTGTACATCATG-TAT-ACTT
1 C-TCATATGGTATATGGAATATACATCATATACATAATCTCATGGCATTCATCATGCTTTCAC--
14353324 AATCAT
63 AATCAT
* * * *
14353330 CTTATATGGTATATGGAAT-TGGCATCATATACACAATCTTATGGCATTCATCAT
1 CTCATATGGTATATGGAATAT-ACATCATATACATAATCTCATGGCATTCATCAT
14353384 ACTAAACATG
Statistics
Matches: 151, Mismatches: 33, Indels: 11
0.77 0.17 0.06
Matches are distributed among these distances:
67 8 0.05
68 142 0.94
69 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.36
Consensus pattern (68 bp):
CTCATATGGTATATGGAATATACATCATATACATAATCTCATGGCATTCATCATGCTTTCACAAT
CAT
Found at i:14354842 original size:37 final size:37
Alignment explanation
Indices: 14354801--14354912 Score: 125
Period size: 37 Copynumber: 3.0 Consensus size: 37
14354791 AAATAATGTT
* **
14354801 ATATGATGATAATGAGGTGTGCGAGTAGGGAGTGCAC
1 ATATGATGATATTGAAATGTGCGAGTAGGGAGTGCAC
* *
14354838 ATATGATGACATTGAAATGTGCGAGTAGGAAGTGCAC
1 ATATGATGATATTGAAATGTGCGAGTAGGGAGTGCAC
* * *** *
14354875 ATATGGTGGTATTGCCTTGTGCGTGTAGGGAGTGCAC
1 ATATGATGATATTGAAATGTGCGAGTAGGGAGTGCAC
14354912 A
1 A
14354913 AGAGCTAAGG
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.28, C:0.11, G:0.35, T:0.27
Consensus pattern (37 bp):
ATATGATGATATTGAAATGTGCGAGTAGGGAGTGCAC
Found at i:14356650 original size:17 final size:17
Alignment explanation
Indices: 14356628--14356669 Score: 84
Period size: 17 Copynumber: 2.5 Consensus size: 17
14356618 AACTCAGTTT
14356628 TAGCTAAACTAATCTTC
1 TAGCTAAACTAATCTTC
14356645 TAGCTAAACTAATCTTC
1 TAGCTAAACTAATCTTC
14356662 TAGCTAAA
1 TAGCTAAA
14356670 ACCCATGCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.38, C:0.21, G:0.07, T:0.33
Consensus pattern (17 bp):
TAGCTAAACTAATCTTC
Found at i:14360650 original size:11 final size:11
Alignment explanation
Indices: 14360631--14360661 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
14360621 CACGCGAGAG
*
14360631 AATATTAATTA
1 AATAATAATTA
14360642 AATAATAATTA
1 AATAATAATTA
14360653 AATAATAAT
1 AATAATAAT
14360662 ATTTTATCGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (11 bp):
AATAATAATTA
Found at i:14364247 original size:49 final size:49
Alignment explanation
Indices: 14364175--14364333 Score: 264
Period size: 49 Copynumber: 3.2 Consensus size: 49
14364165 ATTCATCATT
*
14364175 ATAGCCGGGTCATCATCATCATCGGCTTATGCGCACTCCCTACTCTCAC
1 ATAGCCGGGTCATCATCATCATCGGCTTATGCGCACTCCCTACTCGCAC
* *
14364224 ATAGCCAGGTCATCATCATCATCGGCTTATGCACACTCCCTACTCGCAC
1 ATAGCCGGGTCATCATCATCATCGGCTTATGCGCACTCCCTACTCGCAC
* **
14364273 ATAGCCGGGTCATTATCATCATCGGCTTATGCGTGCTCCCTACTCGCAC
1 ATAGCCGGGTCATCATCATCATCGGCTTATGCGCACTCCCTACTCGCAC
14364322 ATAGCCGGGTCA
1 ATAGCCGGGTCA
14364334 ATATTATCAC
Statistics
Matches: 102, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 102 1.00
ACGTcount: A:0.21, C:0.35, G:0.18, T:0.26
Consensus pattern (49 bp):
ATAGCCGGGTCATCATCATCATCGGCTTATGCGCACTCCCTACTCGCAC
Found at i:14366270 original size:25 final size:25
Alignment explanation
Indices: 14366236--14366295 Score: 84
Period size: 25 Copynumber: 2.4 Consensus size: 25
14366226 GGTCTGTGAT
*
14366236 ATATACGTGGCAAGGCCATGGGTTG
1 ATATACGTGGCAAGGCCATAGGTTG
* * *
14366261 ATATATGTGGCTAGGCTATAGGTTG
1 ATATACGTGGCAAGGCCATAGGTTG
14366286 ATATACGTGG
1 ATATACGTGG
14366296 TTGCGACCAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.25, C:0.12, G:0.33, T:0.30
Consensus pattern (25 bp):
ATATACGTGGCAAGGCCATAGGTTG
Found at i:14378578 original size:383 final size:383
Alignment explanation
Indices: 14377865--14378623 Score: 1331
Period size: 383 Copynumber: 2.0 Consensus size: 383
14377855 CATGGTGGGT
14377865 CCCATTACCTTTCCACCATCCAATCATTTCATTTTTCTTTTAAAACCATGAGCTAACTTCATTTA
1 CCCATTACCTTTCCACCATCCAATCATTTCATTTTTCTTTTAAAACCATGAGCTAACTTCATTTA
*
14377930 ATCCATGGTTTTCCTTTCATCCATCCATCCATGCTTGCATTTGCATTTCATTTAACCTTCATTTC
66 ATCCATGGTTTTCCTTTCATCCATCCATCCATGCTTGCATTTGAATTTCATTTAACCTTCATTTC
* * *
14377995 ATTTTCATTTCAATGCATTTAACAGGCATTGCTCTCATTTTCCTTTAAGTCCTTCAACTTTTCTT
131 ATTTTCATTGCAATGCATCTAACAGGCATTGCTCTCATTTTCCTTTAAGTCCTTAAACTTTTCTT
* *
14378060 TATTTTCATTTCAACCTTCCAAACTTTTCCTTCTTTTCAAATCGGTCCTTCCACCAATATTTTGA
196 TATTTTCAATTCAACCTTCCAAACTTTTCCTTCTTTTCAAATAGGTCCTTCCACCAATATTTTGA
* * *
14378125 CTTCAATTATGTTTTATTTTTGTCCTGTTACTCATACACTTGCAAAATATCCATTTTGCATTCCA
261 CTTCAATTATCTTTTATTTTTGTCCCGTGACTCATACACTTGCAAAATATCCATTTTGCATTCCA
*
14378190 CCAATATATCACAATAATATTTAAATATATAAATACTCTTTTGTACTTTATATTGATA
326 CCAATATATCACAATAATATTTAAATATATAAATACCCTTTTGTACTTTATATTGATA
*
14378248 CCCATTACCTTTCCACCATCCCGA-CATTTCATTTTTCTTTTAAAACCATGAGCTAACTTCATTT
1 CCCATTACCTTTCCACCAT-CCAATCATTTCATTTTTCTTTTAAAACCATGAGCTAACTTCATTT
* *
14378312 AATGCATGGTTTTCCTTTCATCCATCCATCCATGCTTGCATTTGAATTTCATTTAACCTTTATTT
65 AATCCATGGTTTTCCTTTCATCCATCCATCCATGCTTGCATTTGAATTTCATTTAACCTTCATTT
*
14378377 CATTTTCATTGCAATGCATCTAATAGGCATTGCTCTCATTTTCCTTTAAGTCCTTAAACTTTTCT
130 CATTTTCATTGCAATGCATCTAACAGGCATTGCTCTCATTTTCCTTTAAGTCCTTAAACTTTTCT
*
14378442 TTATTTTCAATTCAACCTTCCAAACTTTTCCTTCTTTTCAAGTAGGTCCTTCCACCAATATTTTG
195 TTATTTTCAATTCAACCTTCCAAACTTTTCCTTCTTTTCAAATAGGTCCTTCCACCAATATTTTG
*
14378507 ACTTCAATTATCTTTTATTTTTGTCCCGTGACTCATACACTTGCAAAATATCCATTTTGCATTCG
260 ACTTCAATTATCTTTTATTTTTGTCCCGTGACTCATACACTTGCAAAATATCCATTTTGCATTCC
* * *
14378572 ACCAATATATCATAATAATGTTTAAATATATAGATACCCTTTTGTACTTTAT
325 ACCAATATATCACAATAATATTTAAATATATAAATACCCTTTTGTACTTTAT
14378624 TTAATGAAGG
Statistics
Matches: 356, Mismatches: 19, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
383 353 0.99
384 3 0.01
ACGTcount: A:0.26, C:0.24, G:0.07, T:0.44
Consensus pattern (383 bp):
CCCATTACCTTTCCACCATCCAATCATTTCATTTTTCTTTTAAAACCATGAGCTAACTTCATTTA
ATCCATGGTTTTCCTTTCATCCATCCATCCATGCTTGCATTTGAATTTCATTTAACCTTCATTTC
ATTTTCATTGCAATGCATCTAACAGGCATTGCTCTCATTTTCCTTTAAGTCCTTAAACTTTTCTT
TATTTTCAATTCAACCTTCCAAACTTTTCCTTCTTTTCAAATAGGTCCTTCCACCAATATTTTGA
CTTCAATTATCTTTTATTTTTGTCCCGTGACTCATACACTTGCAAAATATCCATTTTGCATTCCA
CCAATATATCACAATAATATTTAAATATATAAATACCCTTTTGTACTTTATATTGATA
Found at i:14379821 original size:54 final size:54
Alignment explanation
Indices: 14379664--14379828 Score: 249
Period size: 54 Copynumber: 3.1 Consensus size: 54
14379654 TTTCCAGCAA
*
14379664 ACATCCCATCTCACCCAGCTCATGTGCATCCCACCACATCGTGCACATAACCGG
1 ACATCCCATCTCACCCAGCTCATGTGCATCCCACCACATCGTGCACATAGCCGG
** * * *
14379718 ATGTCCCATCTCACCCAACTCATATGCAGCCCACCACATCGTGCACATAGCCGG
1 ACATCCCATCTCACCCAGCTCATGTGCATCCCACCACATCGTGCACATAGCCGG
* * *
14379772 ACATCCCATCTCACCTAGCTCATGTGCATCGCACCACATCGTGCACATAGCAGG
1 ACATCCCATCTCACCCAGCTCATGTGCATCCCACCACATCGTGCACATAGCCGG
14379826 ACA
1 ACA
14379829 GTATCACCAT
Statistics
Matches: 97, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 97 1.00
ACGTcount: A:0.27, C:0.40, G:0.15, T:0.19
Consensus pattern (54 bp):
ACATCCCATCTCACCCAGCTCATGTGCATCCCACCACATCGTGCACATAGCCGG
Found at i:14384562 original size:42 final size:42
Alignment explanation
Indices: 14384450--14384570 Score: 161
Period size: 42 Copynumber: 2.9 Consensus size: 42
14384440 ACTCTGTCTC
* * * * * *
14384450 AGCTTATGTGCACTACAACACCACACATAGCCAGGTCAGCAT
1 AGCTCATGTGCACTCCTACACCGCACATGGCTAGGTCAGCAT
*
14384492 AGCTCATGTGCACTCATACACCGCACATGGCTAGGTCAGCAT
1 AGCTCATGTGCACTCCTACACCGCACATGGCTAGGTCAGCAT
* *
14384534 AGTTCATGTGCACTCCTACACCGCACATGGCTGGGTC
1 AGCTCATGTGCACTCCTACACCGCACATGGCTAGGTC
14384571 GTAATTATCA
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 69 1.00
ACGTcount: A:0.26, C:0.31, G:0.21, T:0.21
Consensus pattern (42 bp):
AGCTCATGTGCACTCCTACACCGCACATGGCTAGGTCAGCAT
Found at i:14385466 original size:23 final size:23
Alignment explanation
Indices: 14385420--14385467 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
14385410 TTTCTCAATA
* *
14385420 ATTTCCACCCAAATCCATCTTAT
1 ATTTCCACACAAATCCATCATAT
14385443 ATTTCCACACATAATCCA-CATAT
1 ATTTCCACACA-AATCCATCATAT
14385466 AT
1 AT
14385468 GGCAGCAACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 16 0.73
24 6 0.27
ACGTcount: A:0.35, C:0.31, G:0.00, T:0.33
Consensus pattern (23 bp):
ATTTCCACACAAATCCATCATAT
Found at i:14385931 original size:18 final size:18
Alignment explanation
Indices: 14385908--14385944 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
14385898 CAAAACCAAG
14385908 CTTTTTCTTCCTTCCTCT
1 CTTTTTCTTCCTTCCTCT
* *
14385926 CTTTTTCTTTCTTCTTCT
1 CTTTTTCTTCCTTCCTCT
14385944 C
1 C
14385945 CTAGAGTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (18 bp):
CTTTTTCTTCCTTCCTCT
Found at i:14390331 original size:54 final size:54
Alignment explanation
Indices: 14390249--14390411 Score: 272
Period size: 54 Copynumber: 3.0 Consensus size: 54
14390239 TTTCCAGCAA
* * * *
14390249 ACATCCCATTTCACCAAGCTCATGTGCATCCCACCACATTGTGCACATAGTCGG
1 ACATCCCATCTCACCCAGCTCATGTGCATCCCACCACATCGTGCACATAGCCGG
*
14390303 ACATCCTATCTCACCCAGCTCATGTGCATCCCACCACATCGTGCACATAGCCGG
1 ACATCCCATCTCACCCAGCTCATGTGCATCCCACCACATCGTGCACATAGCCGG
*
14390357 ACATCCCATCTCACCCAGCTCATGTGCATCCCACCACATCATGCACATAGCCGG
1 ACATCCCATCTCACCCAGCTCATGTGCATCCCACCACATCGTGCACATAGCCGG
14390411 A
1 A
14390412 TAGTATCACC
Statistics
Matches: 102, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 102 1.00
ACGTcount: A:0.26, C:0.39, G:0.14, T:0.21
Consensus pattern (54 bp):
ACATCCCATCTCACCCAGCTCATGTGCATCCCACCACATCGTGCACATAGCCGG
Found at i:14390386 original size:25 final size:25
Alignment explanation
Indices: 14390304--14390389 Score: 64
Period size: 25 Copynumber: 3.3 Consensus size: 25
14390294 CATAGTCGGA
*
14390304 CATCCTATCTCACCCAGCTCATGTG
1 CATCCCATCTCACCCAGCTCATGTG
* * * ** * *
14390329 CATCCCACCACATCGTGCACATAGCCGG
1 CATCCCATCTCACCCAGCTCAT-G--TG
14390357 ACATCCCATCTCACCCAGCTCATGTG
1 -CATCCCATCTCACCCAGCTCATGTG
14390383 CATCCCA
1 CATCCCA
14390390 CCACATCATG
Statistics
Matches: 42, Mismatches: 15, Indels: 8
0.65 0.23 0.12
Matches are distributed among these distances:
25 22 0.52
26 2 0.05
28 2 0.05
29 16 0.38
ACGTcount: A:0.23, C:0.43, G:0.13, T:0.21
Consensus pattern (25 bp):
CATCCCATCTCACCCAGCTCATGTG
Found at i:14395797 original size:20 final size:20
Alignment explanation
Indices: 14395772--14395817 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
14395762 CCTAAAAAAC
*
14395772 ATCTATCGATAGATGAGC-AG
1 ATCTATCCATAGATG-GCTAG
*
14395792 ATCTATCCATGGATGGCTAG
1 ATCTATCCATAGATGGCTAG
14395812 ATCTAT
1 ATCTAT
14395818 TAGTAGATAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 2 0.09
20 21 0.91
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.30
Consensus pattern (20 bp):
ATCTATCCATAGATGGCTAG
Found at i:14406404 original size:42 final size:42
Alignment explanation
Indices: 14406340--14406455 Score: 135
Period size: 42 Copynumber: 2.7 Consensus size: 42
14406330 TCATCAGCTC
* *
14406340 ATGTGCCCTCCCCACTAGCACATGGCTGGGTCATCACCGGCTT
1 ATGTGCACT-CCCACTCGCACATGGCTGGGTCATCACCGGCTT
* *
14406383 ATGTGCACTCCCACTCGCACATAG-TCGGGTCATCATCGGCTT
1 ATGTGCACTCCCACTCGCACATGGCT-GGGTCATCACCGGCTT
* * * *
14406425 ATGTACACTCCTACTCTCACATGGCCGGGTC
1 ATGTGCACTCCCACTCGCACATGGCTGGGTC
14406456 CACATCAACA
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
41 1 0.02
42 53 0.85
43 8 0.13
ACGTcount: A:0.18, C:0.35, G:0.22, T:0.25
Consensus pattern (42 bp):
ATGTGCACTCCCACTCGCACATGGCTGGGTCATCACCGGCTT
Found at i:14411087 original size:202 final size:201
Alignment explanation
Indices: 14410741--14411143 Score: 788
Period size: 202 Copynumber: 2.0 Consensus size: 201
14410731 TATATCTCAC
14410741 AAGTCTCACCATACGTATAATGCCTCCCAATCTTTAAGACAAACACGATTGCTACCAACTCCAAA
1 AAGTCTCACCATACGTATAATGCCTCCCAATCTTTAAGACAAACACGATTGCTACCAACTCCAAA
14410806 TCATGTGCGGGGTATTTTTGCTCATGCCTTTTAAGTTGCCTTGATGCATACGCAATCACCTTCCC
66 TCATGTGCGGGGTATTTTTGCTCATGCCTTTTAAGTTGCCTTGATGCATACGCAATCACCTTCCC
*
14410871 ATGCTACATTAATACACACCCTAAACTAACCCGTGATGTATCACAAAATACCGTATAACCCCTTG
131 ATGCTACATTAATACACACCCTAAACTAACCCGTGATGTATCACAAAATACCGTATAACCCCGTG
14410936 TGCCTT
196 TGCCTT
14410942 NAAGTCTCACCATACGTATAATGCCTCCCAATCTTTAAGACAAACACGATTGCTACCAACTCCAA
1 -AAGTCTCACCATACGTATAATGCCTCCCAATCTTTAAGACAAACACGATTGCTACCAACTCCAA
14411007 ATCATGTGCGGGGTATTTTTGCTCATGCCTTTTAAGTTGCCTTGATGCATACGCAATCACCTTCC
65 ATCATGTGCGGGGTATTTTTGCTCATGCCTTTTAAGTTGCCTTGATGCATACGCAATCACCTTCC
14411072 CATGCTACATTAATACACACCCTAAACTAACCCGTGATGTATCACAAAATACCGTATAACCCCGT
130 CATGCTACATTAATACACACCCTAAACTAACCCGTGATGTATCACAAAATACCGTATAACCCCGT
14411137 GTGCCTT
195 GTGCCTT
14411144 GCGGTAGGCT
Statistics
Matches: 200, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
202 200 1.00
ACGTcount: A:0.29, C:0.29, G:0.13, T:0.29
Consensus pattern (201 bp):
AAGTCTCACCATACGTATAATGCCTCCCAATCTTTAAGACAAACACGATTGCTACCAACTCCAAA
TCATGTGCGGGGTATTTTTGCTCATGCCTTTTAAGTTGCCTTGATGCATACGCAATCACCTTCCC
ATGCTACATTAATACACACCCTAAACTAACCCGTGATGTATCACAAAATACCGTATAACCCCGTG
TGCCTT
Found at i:14412143 original size:20 final size:21
Alignment explanation
Indices: 14412120--14412159 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
14412110 TAGTGAGTTA
14412120 TTTTAATTT-TATATTATTTC
1 TTTTAATTTGTATATTATTTC
*
14412140 TTTTAATTTGTTTATTATTT
1 TTTTAATTTGTATATTATTT
14412160 ATTAGTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.72
Consensus pattern (21 bp):
TTTTAATTTGTATATTATTTC
Found at i:14415919 original size:2 final size:2
Alignment explanation
Indices: 14415912--14415955 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
14415902 TATTCGCATG
14415912 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14415954 TA
1 TA
14415956 CTACCACAAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:14417146 original size:76 final size:76
Alignment explanation
Indices: 14417014--14417162 Score: 203
Period size: 76 Copynumber: 2.0 Consensus size: 76
14417004 GCATGTGCAT
* ** *
14417014 TGCCCACTCTGCACATGCACAGTTGTAAGTGTCACAACATCGTCATTTGACTGACATATGCACTG
1 TGCCCACTCCGCACATGCACAGTTGTAAGTGTCACAACATCGTCATTCAACTGACATATGCACCG
14417079 CCCACTCCACA
66 CCCACTCCACA
* **
14417090 TGCCCACTCCGCATATGCATGGTTGT-AGTTGTCACAACATCGTCATTCAA-TCGACATATGCAC
1 TGCCCACTCCGCACATGCACAGTTGTAAG-TGTCACAACATCGTCATTCAACT-GACATATGCAC
14417153 CGCCCACTCC
64 CGCCCACTCC
14417163 GCACATGCAC
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
75 3 0.05
76 61 0.95
ACGTcount: A:0.25, C:0.34, G:0.16, T:0.26
Consensus pattern (76 bp):
TGCCCACTCCGCACATGCACAGTTGTAAGTGTCACAACATCGTCATTCAACTGACATATGCACCG
CCCACTCCACA
Found at i:14429934 original size:37 final size:37
Alignment explanation
Indices: 14429827--14429966 Score: 169
Period size: 37 Copynumber: 3.9 Consensus size: 37
14429817 TACACAGCTT
* ***
14429827 ATGTGCACTCCCTACACACATAAGGCAATA--TCATC
1 ATGTGCACTCCCTACACACACATTTCAATATCTCATC
* *
14429862 CTGTGCACTCCCTACA-ACACATTTCAATATATCATC
1 ATGTGCACTCCCTACACACACATTTCAATATCTCATC
*
14429898 ATGTGCACTCCCTACACGCACATTTCAATATCTCATC
1 ATGTGCACTCCCTACACACACATTTCAATATCTCATC
* * *
14429935 ATGTGCACTCCCCAAACGCACATTTCAATATC
1 ATGTGCACTCCCTACACACACATTTCAATATC
14429967 ATCACACACA
Statistics
Matches: 92, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
34 9 0.10
35 15 0.16
36 20 0.22
37 48 0.52
ACGTcount: A:0.31, C:0.34, G:0.09, T:0.27
Consensus pattern (37 bp):
ATGTGCACTCCCTACACACACATTTCAATATCTCATC
Found at i:14429979 original size:35 final size:36
Alignment explanation
Indices: 14429879--14429981 Score: 102
Period size: 37 Copynumber: 2.8 Consensus size: 36
14429869 CTCCCTACAA
* ** * *
14429879 CACATTTCAATATATCATCATGTGCACTCCCTACACG
1 CACATTTCAATATCTCATCA-GCACACTCCCCAAACG
**
14429916 CACATTTCAATATCTCATCATGTGCACTCCCCAAACG
1 CACATTTCAATATCTCATCA-GCACACTCCCCAAACG
14429953 CACATTTCAATATCATCA-CA-CACACTCCC
1 CACATTTCAATATC-TCATCAGCACACTCCC
14429982 ACCCACATCA
Statistics
Matches: 60, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
35 7 0.12
37 50 0.83
38 3 0.05
ACGTcount: A:0.31, C:0.36, G:0.06, T:0.27
Consensus pattern (36 bp):
CACATTTCAATATCTCATCAGCACACTCCCCAAACG
Found at i:14431157 original size:20 final size:20
Alignment explanation
Indices: 14431129--14431179 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
14431119 TCTTTTTCTT
14431129 TCTCCTTTCTTTCTTTCCTC
1 TCTCCTTTCTTTCTTTCCTC
* *
14431149 TCTCTTTTCTTTCTTTCCTT
1 TCTCCTTTCTTTCTTTCCTC
14431169 TCTCCTTTCTT
1 TCTCCTTTCTT
14431180 CTAATTGATC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (20 bp):
TCTCCTTTCTTTCTTTCCTC
Found at i:14431365 original size:28 final size:28
Alignment explanation
Indices: 14431333--14431388 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
14431323 GAACCAGCCA
14431333 TGGGATAAGGATGAAGAGTCAAAGCTTC
1 TGGGATAAGGATGAAGAGTCAAAGCTTC
14431361 TGGGATAAGGATGAAGAGTCAAAGCTTC
1 TGGGATAAGGATGAAGAGTCAAAGCTTC
14431389 CTTTGGAAGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.11, G:0.32, T:0.21
Consensus pattern (28 bp):
TGGGATAAGGATGAAGAGTCAAAGCTTC
Found at i:14432994 original size:22 final size:20
Alignment explanation
Indices: 14432956--14432998 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 20
14432946 AAAGGTGATA
14432956 TTTACAAGCTTTCACCAAGC
1 TTTACAAGCTTTCACCAAGC
*
14432976 TTTACAATGGCTTTTACCAAGC
1 TTTACAA--GCTTTCACCAAGC
14432998 T
1 T
14432999 CAGCCAAAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 7 0.35
22 13 0.65
ACGTcount: A:0.28, C:0.26, G:0.12, T:0.35
Consensus pattern (20 bp):
TTTACAAGCTTTCACCAAGC
Found at i:14435994 original size:31 final size:31
Alignment explanation
Indices: 14435956--14436041 Score: 100
Period size: 31 Copynumber: 2.8 Consensus size: 31
14435946 GAAAAAGAAA
* *
14435956 AAGAAGGAGAGAAGGAGCAACGGCAGAGGAG
1 AAGAAGGAGAGAAGGAGCAACGACAGAAGAG
* * *
14435987 AATAAGGAGAGAAGGAGTAGCGACAGAAGAG
1 AAGAAGGAGAGAAGGAGCAACGACAGAAGAG
* * *
14436018 AAGAAAGAGAGAGGGAACAACGAC
1 AAGAAGGAGAGAAGGAGCAACGAC
14436042 GATGCTAGAG
Statistics
Matches: 44, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.49, C:0.09, G:0.40, T:0.02
Consensus pattern (31 bp):
AAGAAGGAGAGAAGGAGCAACGACAGAAGAG
Found at i:14436840 original size:61 final size:61
Alignment explanation
Indices: 14436758--14437047 Score: 368
Period size: 61 Copynumber: 4.8 Consensus size: 61
14436748 GGGAGACTTG
*
14436758 AAGCCCCGATTTATATTGGGTGGCGTGGGCAATTCCCACAAGTAGGTAAAAGGGGGACCTA
1 AAGCCCCGATTTATATTGGGTGGCGTGGGCAATTCCCACGAGTAGGTAAAAGGGGGACCTA
* * * *
14436819 AAGCTCCGATTTATATTGGGTGGTGTGGGCAGTTCCCACGAGTAAGTAAAAGGGGGACCTA
1 AAGCCCCGATTTATATTGGGTGGCGTGGGCAATTCCCACGAGTAGGTAAAAGGGGGACCTA
* * ** * *
14436880 AAGCCTCGATTTATATTGGGTGGCGTGGGCAATTCCCACGAGTAGGTAAAAAGAAGACTTG
1 AAGCCCCGATTTATATTGGGTGGCGTGGGCAATTCCCACGAGTAGGTAAAAGGGGGACCTA
* * *
14436941 AAGCCCCGATTTATATTGGGTGGCATGGGTAGA-TCCCACGAGTAGGT-AAAGGGGGACCGA
1 AAGCCCCGATTTATATTGGGTGGCGTGGGCA-ATTCCCACGAGTAGGTAAAAGGGGGACCTA
* * **** *
14437001 AAGCGCTGATTTATATACAATGGCGTAGGCAATTCCCACGAGTAGGT
1 AAGCCCCGATTTATATTGGGTGGCGTGGGCAATTCCCACGAGTAGGT
14437048 TGTAACACCT
Statistics
Matches: 194, Mismatches: 33, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
59 1 0.01
60 43 0.22
61 149 0.77
62 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (61 bp):
AAGCCCCGATTTATATTGGGTGGCGTGGGCAATTCCCACGAGTAGGTAAAAGGGGGACCTA
Found at i:14437177 original size:18 final size:19
Alignment explanation
Indices: 14437152--14437194 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
14437142 AGGTGAGAAG
*
14437152 AATATTTTA-AGATAAAAT
1 AATATTTTATAAATAAAAT
*
14437170 ATTATTTTATAAATAAAAT
1 AATATTTTATAAATAAAAT
14437189 AATATT
1 AATATT
14437195 AAAATATTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (19 bp):
AATATTTTATAAATAAAAT
Found at i:14448846 original size:20 final size:20
Alignment explanation
Indices: 14448821--14448862 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
14448811 TATTTTGAGT
14448821 AAATAAATAA-ATAAATAATA
1 AAATAAATAATA-AAATAATA
*
14448841 AAATAAATGATAAAATAATA
1 AAATAAATAATAAAATAATA
14448861 AA
1 AA
14448863 GAAATAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 19 0.95
21 1 0.05
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.24
Consensus pattern (20 bp):
AAATAAATAATAAAATAATA
Found at i:14448855 original size:12 final size:12
Alignment explanation
Indices: 14448820--14448870 Score: 54
Period size: 12 Copynumber: 4.3 Consensus size: 12
14448810 TTATTTTGAG
14448820 TAAATAA-ATAAA
1 TAAATAATA-AAA
14448832 TAAATAATAAAA
1 TAAATAATAAAA
*
14448844 TAAATGATAAAA
1 TAAATAATAAAA
14448856 T-AATAA-AGAAA
1 TAAATAATA-AAA
14448867 TAAA
1 TAAA
14448871 AAGAGTTGGG
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
10 1 0.03
11 8 0.24
12 24 0.71
13 1 0.03
ACGTcount: A:0.73, C:0.00, G:0.04, T:0.24
Consensus pattern (12 bp):
TAAATAATAAAA
Found at i:14449272 original size:13 final size:13
Alignment explanation
Indices: 14449249--14449298 Score: 56
Period size: 11 Copynumber: 4.2 Consensus size: 13
14449239 AGTGTCGGCC
14449249 AAAGAAGAAGAAGA
1 AAAG-AGAAGAAGA
14449263 AAAGAGAAGAAG-
1 AAAGAGAAGAAGA
14449275 AAAGA-AAG-AGA
1 AAAGAGAAGAAGA
14449286 AAA-AGAA-AAGA
1 AAAGAGAAGAAGA
14449297 AA
1 AA
14449299 GAAGTCAGCT
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
10 3 0.09
11 13 0.39
12 5 0.15
13 8 0.24
14 4 0.12
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (13 bp):
AAAGAGAAGAAGA
Found at i:14449272 original size:16 final size:16
Alignment explanation
Indices: 14449251--14449302 Score: 60
Period size: 16 Copynumber: 3.5 Consensus size: 16
14449241 TGTCGGCCAA
14449251 AGAAGAAGAAGAAAAG
1 AGAAGAAGAAGAAAAG
14449267 AGAAGAAGAA-AGAAAG
1 AGAAGAAGAAGA-AAAG
14449283 AG-A-AA-AAGAAAAG
1 AGAAGAAGAAGAAAAG
14449296 A-AAGAAG
1 AGAAGAAG
14449303 TCAGCTTTGA
Statistics
Matches: 31, Mismatches: 0, Indels: 11
0.74 0.00 0.26
Matches are distributed among these distances:
13 8 0.26
14 5 0.16
15 2 0.06
16 16 0.52
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (16 bp):
AGAAGAAGAAGAAAAG
Found at i:14469153 original size:27 final size:27
Alignment explanation
Indices: 14469076--14469167 Score: 123
Period size: 26 Copynumber: 3.4 Consensus size: 27
14469066 AAAAGAAAGT
**
14469076 AACAAGAAAGAAAAAATGGGTATAACCC
1 AACAAGAAAG-AAAAATGGGTATGGCCC
14469104 AACAAGAAAG-AAAATGGGTATGGCCC
1 AACAAGAAAGAAAAATGGGTATGGCCC
*
14469130 AACAAGAAAGAAAAATGGGCATGGCCC
1 AACAAGAAAGAAAAATGGGTATGGCCC
**
14469157 AATTAGAAAGA
1 AACAAGAAAGA
14469168 GATGGGAAGA
Statistics
Matches: 58, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
26 24 0.41
27 24 0.41
28 10 0.17
ACGTcount: A:0.52, C:0.14, G:0.23, T:0.11
Consensus pattern (27 bp):
AACAAGAAAGAAAAATGGGTATGGCCC
Found at i:14498764 original size:19 final size:19
Alignment explanation
Indices: 14498740--14498838 Score: 74
Period size: 19 Copynumber: 5.1 Consensus size: 19
14498730 TGCCCGTGTG
14498740 CACGATGTGGGGGGATGTA
1 CACGATGTGGGGGGATGTA
**** *
14498759 CACGATG-GCCTTGATTGTG
1 CACGATGTGGGGGGA-TGTA
*
14498778 CACGATGTGGGGGGATGCA
1 CACGATGTGGGGGGATGTA
* ** *
14498797 CACGATGGTGCCGGCTATGTG
1 CACGAT-GTG-GGGGGATGTA
14498818 CACGATGTGGGGGGATGTA
1 CACGATGTGGGGGGATGTA
14498837 CA
1 CA
14498839 TGAGCCGGGT
Statistics
Matches: 56, Mismatches: 20, Indels: 8
0.67 0.24 0.10
Matches are distributed among these distances:
18 3 0.05
19 33 0.59
20 9 0.16
21 11 0.20
ACGTcount: A:0.19, C:0.17, G:0.41, T:0.22
Consensus pattern (19 bp):
CACGATGTGGGGGGATGTA
Found at i:14498778 original size:38 final size:40
Alignment explanation
Indices: 14498736--14498838 Score: 149
Period size: 38 Copynumber: 2.6 Consensus size: 40
14498726 ATAGTGCCCG
*
14498736 TGTGCACGATGTGGGGGGATGTACACGAT-G-GCCTTGAT-
1 TGTGCACGATGTGGGGGGATGTACACGATGGTGCC-GGATA
* *
14498774 TGTGCACGATGTGGGGGGATGCACACGATGGTGCCGGCTA
1 TGTGCACGATGTGGGGGGATGTACACGATGGTGCCGGATA
14498814 TGTGCACGATGTGGGGGGATGTACA
1 TGTGCACGATGTGGGGGGATGTACA
14498839 TGAGCCGGGT
Statistics
Matches: 58, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
38 28 0.48
39 3 0.05
40 27 0.47
ACGTcount: A:0.18, C:0.17, G:0.42, T:0.23
Consensus pattern (40 bp):
TGTGCACGATGTGGGGGGATGTACACGATGGTGCCGGATA
Found at i:14507588 original size:134 final size:134
Alignment explanation
Indices: 14507325--14507575 Score: 337
Period size: 134 Copynumber: 1.9 Consensus size: 134
14507315 TTTAATTCCA
14507325 ATAAAATTTATCCTAATAGATAACTCATAGAAATATTCCAAAATAAATTTTCAGGATTTTAAGAG
1 ATAAAATTTATCCTAATAGATAACTCATAGAAATATTCCAAAATAAATTTTCAGGATTTTAAGAG
** * *
14507390 GTGATTTGGCTATTCAAAAAATTCAAAAATAGTGACCTTTATCTGTAGGAGGCAGAATTGGTTTT
66 GTGATTTGGCTATAAAAAAAATTCAAAAATAGTGACCTTTATCTGCAGAAGGCAGAATTGGTTTT
14507455 TGAG
131 TGAG
* * * * * * *
14507459 ATAAAATTTATCTTGATATATAACTCATGGAACTATTCCAGAATAAATTTTCAGGATTTTAGGAG
1 ATAAAATTTATCCTAATAGATAACTCATAGAAATATTCCAAAATAAATTTTCAGGATTTTAAGAG
* *
14507524 GTGTATTTGGCCGTA-AAAAAAAATTC-AAAATCGTGATCTTTATCTGCA-AAGG
66 GTG-ATTTGG-C-TATAAAAAAAATTCAAAAATAGTGACCTTTATCTGCAGAAGG
14507576 TAGTTTCGGT
Statistics
Matches: 101, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
134 64 0.63
135 25 0.25
136 10 0.10
137 2 0.02
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.34
Consensus pattern (134 bp):
ATAAAATTTATCCTAATAGATAACTCATAGAAATATTCCAAAATAAATTTTCAGGATTTTAAGAG
GTGATTTGGCTATAAAAAAAATTCAAAAATAGTGACCTTTATCTGCAGAAGGCAGAATTGGTTTT
TGAG
Found at i:14509371 original size:43 final size:43
Alignment explanation
Indices: 14509308--14509418 Score: 141
Period size: 43 Copynumber: 2.6 Consensus size: 43
14509298 ATTGACTCAG
** **
14509308 CCATGTGCGAGTAGGGAGTGCGCATAAGTCGAGGATGACACGG
1 CCATGTGCGAGTAGGGAGTGCGCATAACCCGAGGATGACACAA
** * * *
14509351 TTATGTGAGAGTAGGGAGTGCGCATAACCCGATGATGACCCAA
1 CCATGTGCGAGTAGGGAGTGCGCATAACCCGAGGATGACACAA
14509394 CCATGTGCGAGTAGGGAGTGCGCAT
1 CCATGTGCGAGTAGGGAGTGCGCAT
14509419 GAGCTGGGGA
Statistics
Matches: 56, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 56 1.00
ACGTcount: A:0.26, C:0.19, G:0.36, T:0.19
Consensus pattern (43 bp):
CCATGTGCGAGTAGGGAGTGCGCATAACCCGAGGATGACACAA
Found at i:14509431 original size:43 final size:43
Alignment explanation
Indices: 14509308--14509431 Score: 133
Period size: 43 Copynumber: 2.9 Consensus size: 43
14509298 ATTGACTCAG
**
14509308 CCATGTGCGAGTAGGGAGTGCGCATAAG-TCGAGGATGACACGG
1 CCATGTGCGAGTAGGGAGTGCGCATAAGCT-GAGGATGACACAA
** * * * * *
14509351 TTATGTGAGAGTAGGGAGTGCGCATAACCCGATGATGACCCAA
1 CCATGTGCGAGTAGGGAGTGCGCATAAGCTGAGGATGACACAA
* *
14509394 CCATGTGCGAGTAGGGAGTGCGCATGAGCTGGGGATGA
1 CCATGTGCGAGTAGGGAGTGCGCATAAGCTGAGGATGA
14509432 TGATGATGGG
Statistics
Matches: 63, Mismatches: 17, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
43 63 1.00
ACGTcount: A:0.26, C:0.18, G:0.38, T:0.19
Consensus pattern (43 bp):
CCATGTGCGAGTAGGGAGTGCGCATAAGCTGAGGATGACACAA
Found at i:14524839 original size:21 final size:21
Alignment explanation
Indices: 14524808--14524860 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
14524798 TCTAGACCCA
14524808 ATCTATCGATAAATGTTATTC
1 ATCTATCGATAAATGTTATTC
* * *
14524829 GTCTATTGATAAATGTTCTTC
1 ATCTATCGATAAATGTTATTC
14524850 ATCTATCGATA
1 ATCTATCGATA
14524861 GATCCAATCT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.30, C:0.15, G:0.11, T:0.43
Consensus pattern (21 bp):
ATCTATCGATAAATGTTATTC
Found at i:14524936 original size:20 final size:20
Alignment explanation
Indices: 14524911--14524949 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
14524901 ACATTTATGG
14524911 ATAGATGAA-CAGATCTATCC
1 ATAGAT-AACCAGATCTATCC
14524931 ATAGATAACCAGATCTATC
1 ATAGATAACCAGATCTATC
14524950 GATAAATGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.11
20 16 0.89
ACGTcount: A:0.41, C:0.21, G:0.13, T:0.26
Consensus pattern (20 bp):
ATAGATAACCAGATCTATCC
Found at i:14526829 original size:20 final size:19
Alignment explanation
Indices: 14526792--14526844 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
14526782 TAATTCTTGA
* *
14526792 GTTTTATCTTTTTTATTTTT
1 GTTTTAT-TTTTTAATTTGT
14526812 GTTTTATTTTCTTAATTTGT
1 GTTTTATTTT-TTAATTTGT
*
14526832 -TTTTATTATTTAA
1 GTTTTATTTTTTAA
14526845 ACTTAATTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 4 0.14
19 11 0.38
20 14 0.48
ACGTcount: A:0.17, C:0.04, G:0.06, T:0.74
Consensus pattern (19 bp):
GTTTTATTTTTTAATTTGT
Found at i:14529303 original size:19 final size:19
Alignment explanation
Indices: 14529260--14529305 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
14529250 AAAATCTTGG
** *
14529260 AATAAAATAATATTTTATT
1 AATAAAATAATATTAAAAT
14529279 AATAAAATAATATTAAAAT
1 AATAAAATAATATTAAAAT
*
14529298 ATTAAAAT
1 AATAAAAT
14529306 TTTATTTGAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
AATAAAATAATATTAAAAT
Found at i:14529877 original size:8 final size:8
Alignment explanation
Indices: 14529864--14529904 Score: 57
Period size: 8 Copynumber: 5.1 Consensus size: 8
14529854 CTTAGGAGAG
14529864 AGAAAGGA
1 AGAAAGGA
14529872 AGAAA-GA
1 AGAAAGGA
14529879 AGAAAGGAA
1 AGAAAGG-A
*
14529888 AGAAAGAA
1 AGAAAGGA
14529896 AGAAAGGA
1 AGAAAGGA
14529904 A
1 A
14529905 AAACAAAGAG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
7 7 0.24
8 15 0.52
9 7 0.24
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (8 bp):
AGAAAGGA
Found at i:14529878 original size:4 final size:4
Alignment explanation
Indices: 14529864--14529901 Score: 51
Period size: 4 Copynumber: 9.5 Consensus size: 4
14529854 CTTAGGAGAG
*
14529864 AGAA AGGA AGAA AG-A AGAA AGGAA AGAA AGAA AGAA AG
1 AGAA AGAA AGAA AGAA AGAA A-GAA AGAA AGAA AGAA AG
14529902 GAAAAACAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
3 3 0.10
4 23 0.77
5 4 0.13
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:14532174 original size:59 final size:59
Alignment explanation
Indices: 14532047--14532202 Score: 146
Period size: 59 Copynumber: 2.7 Consensus size: 59
14532037 CAAGATAGGA
* * *
14532047 GACC-AAAACAGAAAGTTT-TTCGCTGCAGCGAGATTC-ATCTCGCTGCAGCGAAATTGT
1 GACCAAAAACAGAAGGTTTCTT-GCTGCAGCGAGATTCTTTCTCGCTGCAGCAAAATTGT
* *
14532104 GACCCAAAAACAGAAGGTTTCTTGCTGCAGCGA-ATTCTTTCTCGCTGTAGCAAAATTTT
1 GA-CCAAAAACAGAAGGTTTCTTGCTGCAGCGAGATTCTTTCTCGCTGCAGCAAAATTGT
* * *
14532163 G-CTAATGAAACAG-AGAG-TTCTCGCTGCAGTGAGATTCTTT
1 GACCAA--AAACAGAAG-GTTTCTTGCTGCAGCGAGATTCTTT
14532203 TTCATTGCAG
Statistics
Matches: 83, Mismatches: 8, Indels: 14
0.79 0.08 0.13
Matches are distributed among these distances:
57 5 0.06
58 21 0.25
59 55 0.66
60 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (59 bp):
GACCAAAAACAGAAGGTTTCTTGCTGCAGCGAGATTCTTTCTCGCTGCAGCAAAATTGT
Found at i:14532285 original size:21 final size:21
Alignment explanation
Indices: 14532243--14532285 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
14532233 CTCGCCACAA
**
14532243 CAAGATTCATTCTTGCTACAG
1 CAAGATTCATTCTCACTACAG
*
14532264 CAAGATTCATTCTCACTGCAG
1 CAAGATTCATTCTCACTACAG
14532285 C
1 C
14532286 GAGAACCAGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.30
Consensus pattern (21 bp):
CAAGATTCATTCTCACTACAG
Found at i:14532587 original size:23 final size:23
Alignment explanation
Indices: 14532557--14532616 Score: 84
Period size: 23 Copynumber: 2.6 Consensus size: 23
14532547 TAGACGTATA
* * *
14532557 CCCATCATTATCATGCACATCAT
1 CCCATCATCATCATACACACCAT
14532580 CCCATCATCATCATACACACCAT
1 CCCATCATCATCATACACACCAT
*
14532603 CACATCATCATCAT
1 CCCATCATCATCAT
14532617 CATCAACTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.33, C:0.38, G:0.02, T:0.27
Consensus pattern (23 bp):
CCCATCATCATCATACACACCAT
Found at i:14532588 original size:3 final size:3
Alignment explanation
Indices: 14532559--14532621 Score: 53
Period size: 3 Copynumber: 21.7 Consensus size: 3
14532549 GACGTATACC
* * *
14532559 CAT CAT TAT CAT GCA- CAT CAT C-C CAT CAT CAT CAT ACA- CAC CAT
1 CAT CAT CAT CAT -CAT CAT CAT CAT CAT CAT CAT CAT -CAT CAT CAT
14532603 CA- CAT CAT CAT CAT CAT CA
1 CAT CAT CAT CAT CAT CAT CA
14532622 ACTTATGCGC
Statistics
Matches: 49, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
2 7 0.14
3 38 0.78
4 4 0.08
ACGTcount: A:0.35, C:0.37, G:0.02, T:0.27
Consensus pattern (3 bp):
CAT
Found at i:14534768 original size:20 final size:19
Alignment explanation
Indices: 14534745--14534798 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 19
14534735 TAAATATAAA
14534745 TAACATAAAACT-AACATTAT
1 TAACATAAAA-TAAACATT-T
*
14534765 TAACTTAAAATAAACATTT
1 TAACATAAAATAAACATTT
* *
14534784 AAACATAAATTAAAC
1 TAACATAAAATAAAC
14534799 TAAACTAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
19 14 0.48
20 15 0.52
ACGTcount: A:0.57, C:0.13, G:0.00, T:0.30
Consensus pattern (19 bp):
TAACATAAAATAAACATTT
Found at i:14535659 original size:16 final size:16
Alignment explanation
Indices: 14535638--14535669 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
14535628 TGAGGGTTGC
14535638 AAAATTAGAATTTTGT
1 AAAATTAGAATTTTGT
*
14535654 AAAATTGGAATTTTGT
1 AAAATTAGAATTTTGT
14535670 TTTAAGGCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.16, T:0.44
Consensus pattern (16 bp):
AAAATTAGAATTTTGT
Found at i:14538980 original size:20 final size:19
Alignment explanation
Indices: 14538957--14539009 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
14538947 TAAATATAAA
14538957 TAACATAAAACT-AACATTAT
1 TAACATAAAA-TAAACATT-T
*
14538977 TAACTTAAAATAAACATTT
1 TAACATAAAATAAACATTT
* *
14538996 AAACATAAATTAAA
1 TAACATAAAATAAA
14539010 TTAAACTAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
19 13 0.46
20 15 0.54
ACGTcount: A:0.58, C:0.11, G:0.00, T:0.30
Consensus pattern (19 bp):
TAACATAAAATAAACATTT
Found at i:14539492 original size:39 final size:39
Alignment explanation
Indices: 14539442--14539618 Score: 191
Period size: 39 Copynumber: 4.6 Consensus size: 39
14539432 GTGCCGGTAG
* *
14539442 TGTGTAGTGTGGGAGAGCACA-CATCGATGATATATGCCA
1 TGTGTGGTGTGGGAGAGCACATGAT-GATGATATATGCCA
* **
14539481 TGTGTGGTGTGGGAGAGCATATGATGATGATATATGTTA
1 TGTGTGGTGTGGGAGAGCACATGATGATGATATATGCCA
*
14539520 TGTGCGGTGTGGGAGAGCACATGATGATGATATATGCCA
1 TGTGTGGTGTGGGAGAGCACATGATGATGATATATGCCA
*** * * *
14539559 TGTGCAATGTGGGAGTGCACATGAGGAT-AT-TA-GCTA
1 TGTGTGGTGTGGGAGAGCACATGATGATGATATATGCCA
* *
14539595 TGTGCGGTGTGGGAGTGCACATGA
1 TGTGTGGTGTGGGAGAGCACATGA
14539619 GCTGAGTTGA
Statistics
Matches: 121, Mismatches: 16, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
36 25 0.21
37 2 0.02
38 2 0.02
39 90 0.74
40 2 0.02
ACGTcount: A:0.25, C:0.11, G:0.36, T:0.28
Consensus pattern (39 bp):
TGTGTGGTGTGGGAGAGCACATGATGATGATATATGCCA
Found at i:14539540 original size:78 final size:75
Alignment explanation
Indices: 14539448--14539616 Score: 214
Period size: 78 Copynumber: 2.2 Consensus size: 75
14539438 GTAGTGTGTA
*** * *
14539448 GTGTGGGAGAGCACA-CATCGATGATATATGCCATGTGTGGTGTGGGAGAGCATATGATGATGAT
1 GTGTGGGAGAGCACATCAT-GATGATATATGCCATGTGCAATGTGGGAGAGCACATGAGGAT-AT
*
14539512 ATATGTTATGTGCG
64 -TA-GCTATGTGCG
* *
14539526 GTGTGGGAGAGCACATGATGATGATATATGCCATGTGCAATGTGGGAGTGCACATGAGGATATTA
1 GTGTGGGAGAGCACATCATGATGATATATGCCATGTGCAATGTGGGAGAGCACATGAGGATATTA
14539591 GCTATGTGCG
66 GCTATGTGCG
*
14539601 GTGTGGGAGTGCACAT
1 GTGTGGGAGAGCACAT
14539617 GAGCTGAGTT
Statistics
Matches: 81, Mismatches: 9, Indels: 5
0.85 0.09 0.05
Matches are distributed among these distances:
75 24 0.30
76 2 0.02
77 2 0.02
78 51 0.63
79 2 0.02
ACGTcount: A:0.25, C:0.11, G:0.36, T:0.28
Consensus pattern (75 bp):
GTGTGGGAGAGCACATCATGATGATATATGCCATGTGCAATGTGGGAGAGCACATGAGGATATTA
GCTATGTGCG
Found at i:14565269 original size:61 final size:61
Alignment explanation
Indices: 14565130--14565370 Score: 283
Period size: 61 Copynumber: 4.0 Consensus size: 61
14565120 AGACATCATC
** * * *
14565130 ACCTACTTGTGGGAACTGCCTACGCCA-CCATATATAAATTGAGGCTTTAGGT--CCCTTTT
1 ACCTACTCATGGGAACTGCCCACGCCACCCA-ATATAAATCGAGGCTTCAGGTCCCCCTTTT
* * * *
14565189 ACCTACTCATGGGATCTGCCCACACCATCCAATATAAATCGAGGCTTCAGGTCCCTCTTTT
1 ACCTACTCATGGGAACTGCCCACGCCACCCAATATAAATCGAGGCTTCAGGTCCCCCTTTT
* * *
14565250 ACCTACTCGTAGGAACTGCCCACGCCACCCAATATAGATTCG-GGCTTCAGGTCCCCCTTTT
1 ACCTACTCATGGGAACTGCCCACGCCACCCAATATA-AATCGAGGCTTCAGGTCCCCCTTTT
* * ** *
14565311 ACCTACTCATGGAAACTGCCCATGCCACCCACCATAAATCGGGGCTTCAGGTCCCCCTTT
1 ACCTACTCATGGGAACTGCCCACGCCACCCAATATAAATCGAGGCTTCAGGTCCCCCTTT
14565371 ACAATCAAAT
Statistics
Matches: 155, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
59 41 0.26
60 7 0.05
61 103 0.66
62 4 0.03
ACGTcount: A:0.23, C:0.33, G:0.17, T:0.27
Consensus pattern (61 bp):
ACCTACTCATGGGAACTGCCCACGCCACCCAATATAAATCGAGGCTTCAGGTCCCCCTTTT
Found at i:14566009 original size:12 final size:12
Alignment explanation
Indices: 14565961--14566024 Score: 58
Period size: 12 Copynumber: 5.2 Consensus size: 12
14565951 TTTCCCTCTC
*
14565961 CTTCTTTTCCTT
1 CTTCTTTTTCTT
* *
14565973 CATCGTTGTTCCTT
1 CTTC-TT-TTTCTT
*
14565987 C-TCTCTTTCTT
1 CTTCTTTTTCTT
14565998 CTTCTTTTTCTT
1 CTTCTTTTTCTT
*
14566010 TTTCTTTTTCTT
1 CTTCTTTTTCTT
14566022 CTT
1 CTT
14566025 TCTTCCCTCT
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
11 6 0.14
12 26 0.60
13 4 0.09
14 7 0.16
ACGTcount: A:0.02, C:0.28, G:0.03, T:0.67
Consensus pattern (12 bp):
CTTCTTTTTCTT
Found at i:14566012 original size:7 final size:6
Alignment explanation
Indices: 14565992--14566028 Score: 56
Period size: 6 Copynumber: 6.0 Consensus size: 6
14565982 TCCTTCTCTC
*
14565992 TTTCTT CTTCTT TTTCTT TTTCTT TTTCTT CTTTCTT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT -TTTCTT
14566029 CCCTCTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
6 22 0.79
7 6 0.21
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (6 bp):
TTTCTT
Found at i:14566054 original size:75 final size:72
Alignment explanation
Indices: 14565974--14566156 Score: 201
Period size: 69 Copynumber: 2.5 Consensus size: 72
14565964 CTTTTCCTTC
* * *
14565974 ATCGTTGTTCCTTCTCTCTTTCTTCTTCTTTTTCTTTTTCTTTTTCTTCTTTCTTCCCTCTTTTT
1 ATCGTTGCTCCTTCTCTC-TTCTTCTTCTTTTT-TTTTCCTTTTT-TTCTTTCTTCCCTCTCTTT
* *
14566039 CTTCTTTTCT
63 CTTCATCTCT
* * *
14566049 GTCGTTGCTCCTTATCTC--CTTCTTC-TTTTTTTTCCTTTTTTTCTTTTTTCCCTCTCTTTCTT
1 ATCGTTGCTCCTTCTCTCTTCTTCTTCTTTTTTTTTCCTTTTTTTCTTTCTTCCCTCTCTTTCTT
14566111 CATCTCT
66 CATCTCT
* * * *
14566118 ATCGCTGCTCTTTCTCTGATTCTTCTTCTTTTTTCTTCC
1 ATCGTTGCTCCTTCTCT-CTTCTTCTTCTTTTTTTTTCC
14566157 CTCTCTTTCT
Statistics
Matches: 90, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
69 38 0.42
70 10 0.11
71 4 0.04
72 14 0.16
73 9 0.10
75 15 0.17
ACGTcount: A:0.03, C:0.30, G:0.04, T:0.63
Consensus pattern (72 bp):
ATCGTTGCTCCTTCTCTCTTCTTCTTCTTTTTTTTTCCTTTTTTTCTTTCTTCCCTCTCTTTCTT
CATCTCT
Found at i:14566254 original size:13 final size:13
Alignment explanation
Indices: 14566236--14566278 Score: 59
Period size: 13 Copynumber: 3.3 Consensus size: 13
14566226 ACCCTTTTTT
14566236 TTCTTTTTCTTTC
1 TTCTTTTTCTTTC
*
14566249 TTCTTTTTTTTTC
1 TTCTTTTTCTTTC
* *
14566262 TTCTCTTTCTTTT
1 TTCTTTTTCTTTC
14566275 TTCT
1 TTCT
14566279 CCTCTTTTTG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (13 bp):
TTCTTTTTCTTTC
Found at i:14566257 original size:22 final size:22
Alignment explanation
Indices: 14566230--14566276 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
14566220 TCCCCCACCC
*
14566230 TTTTTTTTCTTTTTCTTTCTTCT
1 TTTTTTTTC-TTCTCTTTCTTCT
14566253 TTTTTTTTCTTCTCTTTCTT-T
1 TTTTTTTTCTTCTCTTTCTTCT
14566274 TTT
1 TTT
14566277 CTCCTCTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 4 0.17
22 10 0.43
23 9 0.39
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (22 bp):
TTTTTTTTCTTCTCTTTCTTCT
Found at i:14566265 original size:16 final size:15
Alignment explanation
Indices: 14566234--14566287 Score: 63
Period size: 16 Copynumber: 3.3 Consensus size: 15
14566224 CCACCCTTTT
14566234 TTTTCTTTTTCTTTCTTC
1 TTTT-TTTTTC-TTC-TC
14566252 TTTTTTTTTCTTCTC
1 TTTTTTTTTCTTCTC
*
14566267 TTTCTTTTTTCTCCTC
1 TTT-TTTTTTCTTCTC
14566283 TTTTT
1 TTTTT
14566288 GGCCGGGCCT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
15 7 0.21
16 17 0.50
17 6 0.18
18 4 0.12
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTTTTTTTCTTCTC
Found at i:14566270 original size:26 final size:25
Alignment explanation
Indices: 14566230--14566278 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
14566220 TCCCCCACCC
*
14566230 TTTTTTTTCTTTTTCTTTCTTCTTT
1 TTTTTTTTCTCTTTCTTTCTTCTTT
*
14566255 TTTTTTCTTCTCTTTCTTTTTTCT
1 TTTTTT-TTCTCTTTCTTTCTTCT
14566279 CCTCTTTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 6 0.29
26 15 0.71
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (25 bp):
TTTTTTTTCTCTTTCTTTCTTCTTT
Found at i:14566279 original size:13 final size:13
Alignment explanation
Indices: 14566232--14566279 Score: 53
Period size: 13 Copynumber: 3.7 Consensus size: 13
14566222 CCCCACCCTT
*
14566232 TTTTTTCTTTTTC
1 TTTTTTCTCTTTC
* *
14566245 TTTCTTCT-TTTT
1 TTTTTTCTCTTTC
14566257 TTTTCTTCTCTTTC
1 TTTT-TTCTCTTTC
14566271 TTTTTTCTC
1 TTTTTTCTC
14566280 CTCTTTTTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
12 6 0.21
13 16 0.55
14 7 0.24
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTTTTCTCTTTC
Found at i:14568862 original size:21 final size:21
Alignment explanation
Indices: 14568836--14568879 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
14568826 AGAAAGACGA
*
14568836 CTACAAATATATCTAGGTATG
1 CTACAAATATATCCAGGTATG
14568857 CTACAAATATATCCAGGTATG
1 CTACAAATATATCCAGGTATG
14568878 CT
1 CT
14568880 TAGAACACCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32
Consensus pattern (21 bp):
CTACAAATATATCCAGGTATG
Found at i:14572109 original size:61 final size:61
Alignment explanation
Indices: 14571984--14572218 Score: 246
Period size: 61 Copynumber: 3.9 Consensus size: 61
14571974 CACCAACTGG
* * * * *
14571984 TGGGAACTGACCATGCCACC-ATATATAAATCGGGGCTTCAAGT-CCCCTTTTACCTACTTA
1 TGGGAACTGCCCACGACACCTA-ATATAAATCGAGGCTTCAAGTCCCCCTTTTACCTACTCA
* *
14572044 TGGGATA-TGCCCACGACATCC-AATATAAATCGAGGCTCCAAGTCCCCCTTTTACCTACTCG
1 TGGGA-ACTGCCCACGACA-CCTAATATAAATCGAGGCTTCAAGTCCCCCTTTTACCTACTCA
* * * * * * *
14572105 TGGGAATTACCCACGTCGCCTAATATAAATTGAGGCTTTAGGTCCCCCTTTTACCTACTCA
1 TGGGAACTGCCCACGACACCTAATATAAATCGAGGCTTCAAGTCCCCCTTTTACCTACTCA
* * * *
14572166 TGGGAACTGCCCACGCCACCTAATATAAATCGGGGCTTGAGGT-CCCCTTTTAC
1 TGGGAACTGCCCACGACACCTAATATAAATCGAGGCTTCAAGTCCCCCTTTTAC
14572219 AATCAAATAT
Statistics
Matches: 148, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
60 45 0.30
61 103 0.70
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (61 bp):
TGGGAACTGCCCACGACACCTAATATAAATCGAGGCTTCAAGTCCCCCTTTTACCTACTCA
Found at i:14572877 original size:23 final size:25
Alignment explanation
Indices: 14572851--14572916 Score: 73
Period size: 26 Copynumber: 2.6 Consensus size: 25
14572841 TCTCTCCCTC
14572851 TCTT-TCTTTTTCTTTTTC-TTCTT
1 TCTTCTCTTTTTCTTTTTCTTTCTT
*
14572874 TCTTCCCTCTCTTTCTTTTTCTTTCTT
1 TCTT--CTCTTTTTCTTTTTCTTTCTT
*
14572901 CCTTCTCTTTCTTCTT
1 TCTTCTCTTT-TTCTT
14572917 CTCTGTAGCT
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
23 4 0.11
25 5 0.14
26 18 0.51
27 8 0.23
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (25 bp):
TCTTCTCTTTTTCTTTTTCTTTCTT
Found at i:14572881 original size:32 final size:35
Alignment explanation
Indices: 14572840--14572906 Score: 113
Period size: 32 Copynumber: 2.0 Consensus size: 35
14572830 TTGCTACTCC
14572840 TTCTCTCCCTCTCTTTCTTTTTCTTT-TT-CTTCT
1 TTCTCTCCCTCTCTTTCTTTTTCTTTCTTCCTTCT
14572873 TTCT-TCCCTCTCTTTCTTTTTCTTTCTTCCTTCT
1 TTCTCTCCCTCTCTTTCTTTTTCTTTCTTCCTTCT
14572907 CTTTCTTCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
32 21 0.66
33 6 0.19
34 5 0.16
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (35 bp):
TTCTCTCCCTCTCTTTCTTTTTCTTTCTTCCTTCT
Found at i:14572918 original size:23 final size:23
Alignment explanation
Indices: 14572861--14572918 Score: 91
Period size: 23 Copynumber: 2.6 Consensus size: 23
14572851 TCTTTCTTTT
14572861 TCTTT-TTCTTCTTTCTTCCCTC
1 TCTTTCTTCTTCTTTCTTCCCTC
* *
14572883 TCTTTCTTTTTCTTTCTTCCTTC
1 TCTTTCTTCTTCTTTCTTCCCTC
14572906 TCTTTCTTCTTCT
1 TCTTTCTTCTTCT
14572919 CTGTAGCTGC
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
22 5 0.16
23 27 0.84
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (23 bp):
TCTTTCTTCTTCTTTCTTCCCTC
Found at i:14572953 original size:92 final size:90
Alignment explanation
Indices: 14572807--14572982 Score: 237
Period size: 92 Copynumber: 1.9 Consensus size: 90
14572797 AGCTATTTTT
* *
14572807 TTCCCTCTCCTTCTTCTCCTCTGTTGCTACTCCTTCTCTCCCTCTCTTTCTTTTTCTTTTTCTTC
1 TTCCCTCTCCTTCTTCTCCTCTGTAGCTACTCCTTCTATCCCTCTCTTTCTTTTTCTTTTTCTTC
14572872 TTTCTTCCCTCTCTTTCTTTTTCTTTC
66 TTTCTTCCCTCT-TTT-TTTTTCTTTC
* * * * * * *
14572899 TTCCTTCTCTTTCTTCTTCTCTGTAGCTGCTCGTTCTATCCTTTTTCTTT-TTTTTCTTTTTCTT
1 TTCCCTCTCCTTCTTCTCCTCTGTAGCTACTCCTTCTATCC-CTCTCTTTCTTTTTCTTTTTCTT
14572963 CTTTCTTCCCTCTTTTTTTT
65 CTTTCTTCCCTCTTTTTTTT
14572983 CTCCTCTGCA
Statistics
Matches: 74, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
90 4 0.05
91 3 0.04
92 61 0.82
93 6 0.08
ACGTcount: A:0.02, C:0.33, G:0.03, T:0.62
Consensus pattern (90 bp):
TTCCCTCTCCTTCTTCTCCTCTGTAGCTACTCCTTCTATCCCTCTCTTTCTTTTTCTTTTTCTTC
TTTCTTCCCTCTTTTTTTTTCTTTC
Found at i:14572961 original size:66 final size:65
Alignment explanation
Indices: 14572885--14573053 Score: 159
Period size: 66 Copynumber: 2.6 Consensus size: 65
14572875 CTTCCCTCTC
* * *
14572885 TTTCTTTTTCTTTCTTCCTTCTCTTTCTTCTTCTCTGTAGCTGCTCGTTCTATC-CTTTTTCTTT
1 TTTCTTTTTCTTTCTTCCTTCTCTTTCTTCTTCTCTGT-GCAGC-AGTTCTATCTCTCTTTCTTT
14572949 TT
64 TT
* * * *
14572951 TTTCTTTTTC-TTCTTTCTTCCCTCTTT-TTTTTCTCCTCTGCAGCAGTTCTTTCTCTCTTTCTT
1 TTTCTTTTTCTTTCTTCCTT--CTCTTTCTTCTTCT-CTGTGCAGCAGTTCTATCTCTCTTTCTT
14573014 TTT
63 TTT
* *
14573017 TTT-TTCCTTCTTTCTTCCCTT-TCTTTCTTCTCCTCTG
1 TTTCTT-TTTCTTTCTT-CCTTCTCTTTCTTCTTCTCTG
14573054 CCACTACTCC
Statistics
Matches: 83, Mismatches: 12, Indels: 17
0.74 0.11 0.15
Matches are distributed among these distances:
65 24 0.29
66 42 0.51
67 14 0.17
68 3 0.04
ACGTcount: A:0.02, C:0.30, G:0.05, T:0.63
Consensus pattern (65 bp):
TTTCTTTTTCTTTCTTCCTTCTCTTTCTTCTTCTCTGTGCAGCAGTTCTATCTCTCTTTCTTTTT
Found at i:14573076 original size:63 final size:60
Alignment explanation
Indices: 14572940--14573094 Score: 163
Period size: 63 Copynumber: 2.5 Consensus size: 60
14572930 CGTTCTATCC
* * * *
14572940 TTTTTCTTTTTTTTCTTTTTCTTCTTTCTTCCCTCTTTTTTTTCTCCTCTGCAGCAGTTCT
1 TTTTTCTTCTTTTT-TTTTTCTTCTTTCTTCCCTCTTTTTCTTCTCCTCTGCAGCACTCCT
*
14573001 TTCTCTCTTTCTTTTTTTTTTCCTTCTTTCTTCCCT-TTCTTTCTTCTCCTCTGCCA-CTACTCC
1 TT-TTTC-TTCTTTTTTTTTT-CTTCTTTCTTCCCTCTT-TTTCTTCTCCTCTG-CAGC-ACTCC
14573064 T
60 T
14573065 TCTTTTCTTCTTTTTCTTTTTCTT-TTTCTT
1 T-TTTTCTTCTTTTT-TTTTTCTTCTTTCTT
14573095 TTTTCTTCCC
Statistics
Matches: 80, Mismatches: 6, Indels: 15
0.79 0.06 0.15
Matches are distributed among these distances:
61 2 0.03
62 16 0.20
63 46 0.57
64 15 0.19
65 1 0.01
ACGTcount: A:0.03, C:0.29, G:0.03, T:0.66
Consensus pattern (60 bp):
TTTTTCTTCTTTTTTTTTTCTTCTTTCTTCCCTCTTTTTCTTCTCCTCTGCAGCACTCCT
Found at i:14573083 original size:6 final size:6
Alignment explanation
Indices: 14573072--14573097 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
14573062 CCTTCTTTTC
14573072 TTCTTT TTCTTT TTCTTT TTCTTT TT
1 TTCTTT TTCTTT TTCTTT TTCTTT TT
14573098 TCTTCCCTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTCTTT
Found at i:14573097 original size:13 final size:13
Alignment explanation
Indices: 14573064--14573101 Score: 60
Period size: 13 Copynumber: 2.9 Consensus size: 13
14573054 CCACTACTCC
14573064 TTCTTTTCTTCTTT
1 TTCTTTT-TTCTTT
14573078 TTC-TTTTTCTTT
1 TTCTTTTTTCTTT
14573090 TTCTTTTTTCTT
1 TTCTTTTTTCTT
14573102 CCCTCTCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 9 0.39
13 11 0.48
14 3 0.13
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (13 bp):
TTCTTTTTTCTTT
Found at i:14573105 original size:69 final size:63
Alignment explanation
Indices: 14572944--14573118 Score: 196
Period size: 69 Copynumber: 2.7 Consensus size: 63
14572934 CTATCCTTTT
*
14572944 TCTTT-TTTTTCTTTTTCTTCTTTCTTCCCTCTT-TTTTTTCTCCTCTGCAGCAGTTCTTTCTC
1 TCTTTCTTTTTCTTTTTCTTCTTTCTTCCCT-TTCTTTTTTCTCCTCTGCAGCACTTCTTTCTC
*
14573006 TCTTTCTTTTT-TTTTTCCTTCTTTCTTCCCTTTCTTTCTTCTCCTCTGCCA-CTACTCCTTCTT
1 TCTTTCTTTTTCTTTTT-CTTCTTTCTTCCCTTTCTTTTTTCTCCTCTG-CAGC-A---CTTC-T
14573069 TTCTTC
59 TTC-TC
* * *
14573075 TTTTTCTTTTTCTTTTTCTTTTTTCTTCCCTCTCTTTTTTCTCC
1 TCTTTCTTTTTCTTTTTCTTCTTTCTTCCCTTTCTTTTTTCTCC
14573119 CCGAGACGCC
Statistics
Matches: 96, Mismatches: 6, Indels: 15
0.82 0.05 0.13
Matches are distributed among these distances:
62 12 0.12
63 33 0.34
64 3 0.03
67 3 0.03
68 4 0.04
69 36 0.38
70 5 0.05
ACGTcount: A:0.02, C:0.31, G:0.02, T:0.65
Consensus pattern (63 bp):
TCTTTCTTTTTCTTTTTCTTCTTTCTTCCCTTTCTTTTTTCTCCTCTGCAGCACTTCTTTCTC
Found at i:14573135 original size:73 final size:69
Alignment explanation
Indices: 14572949--14573169 Score: 172
Period size: 69 Copynumber: 3.2 Consensus size: 69
14572939 CTTTTTCTTT
* * * * *
14572949 TTTTTCTTTTTCTTCTTTCTTCCCTCTTTTTTTTCTCCTCTG-CAGC-AGT---TC-TTTC-TCT
1 TTTTTCTTTTTCTTCTTTCTTCCCTCTCTTTCTTCTCCCCCGCCA-CTACTCCCTCTTTTCTTCT
*
14573007 CTTTC
65 TTTTC
* * * *
14573012 TTTTT-TTTTTCCTTCTTTCTTCCCTTTCTTTCTTCTCCTCTGCCACTACTCCTTCTTTTCTTCT
1 TTTTTCTTTTT-CTTCTTTCTTCCCTCTCTTTCTTCTCCCCCGCCACTACTCCCTCTTTTCTTCT
14573076 TTTTC
65 TTTTC
* * *
14573081 TTTTTCTTTTTCTTTTTTCTTCCCTCTCTTTTTTCTCCCCGAGACGCCACTACTCCCTCTTTCCT
1 TTTTTCTTTTTCTTCTTTCTTCCCTCTCTTTCTTCTCCCC----CGCCACTACTCCCTCTTTTCT
14573146 T-TTCTTTCC
62 TCTT-TTT-C
*
14573155 TTTCTCTTTTCTCTT
1 TTTTTCTTTT-TCTT
14573170 AGTCGGGTCC
Statistics
Matches: 129, Mismatches: 13, Indels: 20
0.80 0.08 0.12
Matches are distributed among these distances:
62 5 0.04
63 34 0.26
64 4 0.03
67 2 0.02
68 4 0.03
69 37 0.29
70 5 0.04
72 2 0.02
73 22 0.17
74 10 0.08
75 4 0.03
ACGTcount: A:0.04, C:0.33, G:0.03, T:0.60
Consensus pattern (69 bp):
TTTTTCTTTTTCTTCTTTCTTCCCTCTCTTTCTTCTCCCCCGCCACTACTCCCTCTTTTCTTCTT
TTTC
Found at i:14573141 original size:132 final size:131
Alignment explanation
Indices: 14572885--14573156 Score: 281
Period size: 132 Copynumber: 2.1 Consensus size: 131
14572875 CTTCCCTCTC
* * * *
14572885 TTTCTTT--TTCTTTCTTCCTTCTCTTTCTTCTTCTCTGTAGCTGCTCGTTCTATCCTTTTTCTT
1 TTTCTTTCCTTCTTTCTTCCTTCTCTTTCTTCTCCTCTGCAGCTACTCCTTCTATCCTTTTTCTT
* * * ** * *
14572948 TTTTTTCTTTTTCTTCTTTCTTCCCTCTTTTTTTTCTCCTCTGCAGCAGTTCTTTCTCTCTTTCT
66 CTTTTTCTTTTTCTTCTTTCTTCCCTCTCTTTTTTCTCCTCCGCAGCAGCACTCTCCCTCTTTC-
*
14573013 TT
130 CT
* * *
14573015 TTTTTTTCCTTCTTTCTTCCCTT-TCTTTCTTCTCCTCTGCCA-CTACTCCTTCTTTTCTTCTTT
1 TTTCTTTCCTTCTTTCTT-CCTTCTCTTTCTTCTCCTCTG-CAGCTACTCCTTCTATCCTT-TTT
*
14573078 -TTCTTTTTCTTTTTCTTTTTTCTTCCCTCTCTTTTTTCTCC-CCG-AG-ACGCCACTACTCCCT
63 CTTCTTTTTCTTTTTCTTCTTTCTTCCCTCTCTTTTTTCTCCTCCGCAGCA-G-CACT-CTCCCT
14573139 CTTTCCT
125 CTTTCCT
14573146 TTTCTTTCCTT
1 TTTCTTTCCTT
14573157 TCTCTTTTCT
Statistics
Matches: 117, Mismatches: 17, Indels: 15
0.79 0.11 0.10
Matches are distributed among these distances:
129 1 0.01
130 9 0.08
131 15 0.13
132 84 0.72
133 8 0.07
ACGTcount: A:0.04, C:0.32, G:0.04, T:0.60
Consensus pattern (131 bp):
TTTCTTTCCTTCTTTCTTCCTTCTCTTTCTTCTCCTCTGCAGCTACTCCTTCTATCCTTTTTCTT
CTTTTTCTTTTTCTTCTTTCTTCCCTCTCTTTTTTCTCCTCCGCAGCAGCACTCTCCCTCTTTCC
T
Found at i:14573206 original size:15 final size:15
Alignment explanation
Indices: 14573186--14573218 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
14573176 GTCCCTCACC
14573186 CTTTTTTTTCTCTTT
1 CTTTTTTTTCTCTTT
*
14573201 CTTTTTTTTTTCTTT
1 CTTTTTTTTCTCTTT
14573216 CTT
1 CTT
14573219 CTCCCTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (15 bp):
CTTTTTTTTCTCTTT
Found at i:14578387 original size:38 final size:40
Alignment explanation
Indices: 14578336--14578436 Score: 143
Period size: 38 Copynumber: 2.6 Consensus size: 40
14578326 AGTGCCCTTA
*
14578336 TGCACGATGTGGGGGGATGTACACAATGGCA-CTGAT-TG
1 TGCACGATGTGGGGGGATGTACACAATGGCACCAGATATG
* * *
14578374 TGCACGATGTGGGGGGATGCACACGATGGCACCAGCTATG
1 TGCACGATGTGGGGGGATGTACACAATGGCACCAGATATG
*
14578414 TGCACGATGTGGGGGAATGTACA
1 TGCACGATGTGGGGGGATGTACA
14578437 TGAGCCGGGT
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
38 29 0.53
39 3 0.05
40 23 0.42
ACGTcount: A:0.24, C:0.18, G:0.38, T:0.21
Consensus pattern (40 bp):
TGCACGATGTGGGGGGATGTACACAATGGCACCAGATATG
Found at i:14579402 original size:19 final size:19
Alignment explanation
Indices: 14579378--14579415 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
14579368 CCATTTGACT
14579378 TATTGGAGTATGATTTGAG
1 TATTGGAGTATGATTTGAG
14579397 TATTGGAGTATGATTTGAG
1 TATTGGAGTATGATTTGAG
14579416 GTTTAGAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.00, G:0.32, T:0.42
Consensus pattern (19 bp):
TATTGGAGTATGATTTGAG
Found at i:14593835 original size:25 final size:24
Alignment explanation
Indices: 14593781--14593841 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
14593771 TGTGGTCGCA
*
14593781 ACCACGTATATCAACTCATGACCT
1 ACCACGTATATCAACCCATGACCT
* * *
14593805 AGCCACATATATCAACCCGTGGCCT
1 A-CCACGTATATCAACCCATGACCT
14593830 CACCACGTATAT
1 -ACCACGTATAT
14593842 ATTACAGACC
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
24 1 0.03
25 28 0.93
26 1 0.03
ACGTcount: A:0.31, C:0.34, G:0.11, T:0.23
Consensus pattern (24 bp):
ACCACGTATATCAACCCATGACCT
Found at i:14594954 original size:38 final size:36
Alignment explanation
Indices: 14594925--14595026 Score: 123
Period size: 38 Copynumber: 2.7 Consensus size: 36
14594915 GTGATATTGC
* *
14594925 CTGTGCATGATATGGGGGGATGCACACGGTAGCATTAG
1 CTGTGCACGATGTGGGGGGATGCACACGGT-G-ATTAG
* *
14594963 CTGTGCACGATGTGGAGGGATGCACACGATGACTCTAG
1 CTGTGCACGATGTGGGGGGATGCACACGGTGA-T-TAG
*
14595001 CTGTGCACGATGTGAGGGGATGCACA
1 CTGTGCACGATGTGGGGGGATGCACA
14595027 TGAGCTAGGT
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
36 1 0.02
37 2 0.04
38 53 0.95
ACGTcount: A:0.24, C:0.19, G:0.36, T:0.22
Consensus pattern (36 bp):
CTGTGCACGATGTGGGGGGATGCACACGGTGATTAG
Found at i:14595287 original size:17 final size:16
Alignment explanation
Indices: 14595265--14595297 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
14595255 AGCGAGAAAC
14595265 ATTCTGTTTGGCTTGCT
1 ATTCTGTTTGG-TTGCT
14595282 ATTCTGTTTGGTTGCT
1 ATTCTGTTTGGTTGCT
14595298 GACCCCCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.06, C:0.15, G:0.24, T:0.55
Consensus pattern (16 bp):
ATTCTGTTTGGTTGCT
Found at i:14598462 original size:30 final size:31
Alignment explanation
Indices: 14598408--14598467 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 31
14598398 TTTTCATCCT
* *
14598408 TTACAATTTGGTCTTTCAAACTTTTCATAAA
1 TTACAAATTGATCTTTCAAACTTTTCATAAA
* *
14598439 TTACAAATTGATCTTT-TAACTTTTGATAA
1 TTACAAATTGATCTTTCAAACTTTTCATAA
14598468 TTATAACTTC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 11 0.44
31 14 0.56
ACGTcount: A:0.33, C:0.13, G:0.07, T:0.47
Consensus pattern (31 bp):
TTACAAATTGATCTTTCAAACTTTTCATAAA
Found at i:14605038 original size:170 final size:169
Alignment explanation
Indices: 14604721--14609878 Score: 4157
Period size: 170 Copynumber: 30.3 Consensus size: 169
14604711 NNNAACTTCT
* * * * * * *
14604721 ATTTAAAATCATTTATAA-AGTATAAAACCACTTAAAGCGAGTAACAAGCCTGTTAAAGGTATGA
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGA
* * * ** *
14604785 GTGACTATAAATGGACTTTTCTTGTCAATGGATGCCTTTCACTTCACGTTTCTTGAGGCAAACAT
66 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAATGCAAACAT
* * *
14604850 GC-AATTATAATCTGTTTTAGCCAAAAAGGAAAACAATTCA
131 -CAAATTATGATCTGTTTTAACCAAAAATGAAAA-AATTCA
* * * * *
14604890 ACTTAAAATCATTTATAAGATTTTAAAACCATTTACAGCGAGTAATTTGGCTTTTGAAGGCATGA
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGA
* * * ** * *
14604955 GTGAGTAGAAATGGACTTTTATTGTCAATGGATGGCTTTCGCTTCACATTTCTCAATACGAACAT
66 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAATGCAAACAT
* *** *
14605020 CAAATTATGATATGTTTTAATGGAAAGTGGAAAAAAAATT-A
131 CAAATTATGATCTGTTTTAACCAAAAAT-G--AAAAAATTCA
** * *
14605061 ATTTAAAATCATTTATAA-ATTTATAAAACCATTTAAAATGAGTTACTAGGCTTTTGAAGGCTTG
1 ATTTAAAATCATTTATAAGA-TTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATG
* * ** * * * * * ** *
14605125 AATGACTATAAATGGACTTTTCTTATCAGGGGGTGGGTTTCACTTCACGTTTTTTTATGCAAATA
65 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAATGCAAACA
* * * * *
14605190 TCAAATTATGTTCTGTTTGAACTAAAAATAAAAAAATTTA
130 TCAAATTATGATCTGTTTTAACCAAAAATGAAAAAATTCA
* * * ** * *
14605230 ATGTAAAATCATTTATAAGATTATAAAGCCATTTAAAGTGAGTAACTAGGCTTTCCAAGCCATAA
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGA
** * * * * ** * * *
14605295 GTGACTATAAATAAACTTTTCTTATCAATGGATAGATTTCACTTCACATTTC-CTGATGCAGATA
66 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTC-AATGCAAACA
* * * * *
14605359 TCCAATTATGATTTGTTTTAACTAGAAATGGAAAAATTTTCA
130 TCAAATTATGATCTGTTTTAACCAAAAAT-GAAAAA-ATTCA
* * * * * * *
14605401 ATTTAAAATCATTTGTAAGATTATAAAATCGTTTAAAGCAACTAACTAGGCTTTTGAAGGTACGA
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGA
* * ** * * **
14605466 GGGACTACAAAAAGACTTTTCTTGTGAATGGATGGCTTTTGCTTCATGTTTC-CAGATGCATGCA
66 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCA-ATGCAAACA
** * *
14605530 TCAAAAAATGATCTATTTTAACCAAAAATGAAAAAAATTTTA
130 TCAAATTATGATCTGTTTTAACCAAAAATG-AAAAAA-TTCA
* * * * *
14605572 ATTTAAAATCATTAATAA-AGTTACAAAACCATTT-AAGTGAGTAACAAGGCTTTCGAAGGCATG
1 ATTTAAAATCATTTATAAGA-TTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATG
* *
14605635 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGG-TTGTCGCTTCATGTTTCTCGAGGCAAAC
65 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTT-TCGCTTCATGTTTCTCAATGCAAAC
* * * *
14605699 ATCCAAGTAAGATTTG-TTTAACCAAAAATGAAAAACAAATTCA
129 ATCAAATTATGATCTGTTTTAACCAAAAATG--AAA-AAATTCA
* * * * * * ** *
14605742 A-CTCAAATCATTTATGAGATTATAAAACCATTTAGAGTGGGTAACTAGGCTTTCAAAGGCATTA
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGA
* * * * * * * *
14605806 GTGATTACAAATGGACTTTTCTTATTAATCGATGGCTTTTGCTTCATATTTCCCAATGCAAACAT
66 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAATGCAAACAT
* ** *
14605871 CAAATTATGATATGTTTTTAATGAAAAATAAAAGAAATTCA
131 CAAATTATGATCTG-TTTTAACCAAAAATGAAA-AAATTCA
* * * * *
14605912 ATTTAAAATCATTTATAA-AGTTATGAAACCACTTAAAGCGAGTAACAAGGCTATTAAAGGCATG
1 ATTTAAAATCATTTATAAGA-TTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATG
* * * ** *
14605976 AGTGACTATAAATGGACTTTTCTTGTTAATGGATGCCTTTCACTTCATGTTTCTTGAGGCAAACA
65 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAATGCAAACA
* * *
14606041 TGC-AATTATAATCTGTTTTAGCCAAAAAGGAAAAAAATTCA
130 T-CAAATTATGATCTGTTTTAACCAAAAATG-AAAAAATTCA
* * * * * * * *
14606082 ACTTAAAATCATTTACAAGATTTTACAACCATTTACAGCGAGTAATTTGGCTTTTGAAGGCATTA
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGA
* * * ** *
14606147 GTGAGTATAAATGGACTTTTCTTGTCACTTGATGGCTTTCGCTTCACATTTCTCAATACAAACAT
66 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAATGCAAACAT
* *** *
14606212 CAAATTATGATATGTTTTAATGGAAAATGGAAAAAATTTA
131 CAAATTATGATCTGTTTTAACCAAAAAT-GAAAAAATTCA
* * * * *
14606252 ATTTAAAATCATTTATAA-ATTTATAAAACCACTTAAAGTGGGTTACTAGGCTTTTGAAGGCTTG
1 ATTTAAAATCATTTATAAGA-TTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATG
* * * * * * **
14606316 AATGACTATAAAAGGACTTTTCTTGTCAGTAGG-TGGGTTTCACTTCATGTTTTTTGATGCAAAC
65 AGTGACTATAAATGGACTTTTCTTGTCAAT-GGATGGCTTTCGCTTCATGTTTCTCAATGCAAAC
* * * * *
14606380 ATCAAATTATGTTCGGTTTGAACTAAAAATAAAAAAAAATT-A
129 ATCAAATTATGATCTGTTTTAACCAAAAAT--GAAAAAATTCA
* * ** *
14606422 ATGTAAAATCATTTATAAGATTATAAAGCCATTTAAAGCGAGTAACTAGGCTTTCCAAGCCATGA
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGA
* * * * * ** ** *
14606487 GTGACTATAAATGAACTTTGT-TTATCAATGGATAGATTTCACTTCACATTTCTTGATGCAAATA
66 GTGACTATAAATGGACTTT-TCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAATGCAAACA
* * * * *
14606551 TCCAATTATGATTTGTTTTAACTAGAAATGGAAAAATTTTCA
130 TCAAATTATGATCTGTTTTAACCAAAAAT-GAAAAA-ATTCA
* * * * *
14606593 ATTTAAAATCATTTGTAAGATTATAAAACCGTTTAAAGCAACTAACTAGGCTTTTGAAGGCACGA
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGA
* * * * * * **
14606658 GGGACTACAAAAGGACTTTTCTTGTCAATTGATGGCTTTTGCTTCATGTGTC-CAGATGCATGCA
66 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCA-ATGCAAACA
** * *
14606722 T-AAAAAACTGATATGTTTTAACCAAAAATGAAAACAAAATTTA
130 TCAAATTA-TGATCTGTTTTAACCAAAAATG--AA-AAAATTCA
* * * * * * * *
14606765 ATTTAAAATCATTAATAAGGTTACAAAACCATTTAACGTGAGTAACAAGGCTTTCGAAGGTATGA
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGA
** * *
14606830 GTGACTATAAATGGACTTTTCTTGTCAATGGATAACTTTTGCTTCATGTTTC-CTAAGGCAAACA
66 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTC-AATGCAAACA
* * * * * *
14606894 TCAAATTATTATTTGTTTTAACCTAAGATTAGAAAAATTTA
130 TCAAATTATGATCTGTTTTAACCAAAAATGA-AAAAATTCA
* * * * * *
14606935 ATTTAAAATCATTTA-AAAAGTAATAAAACCTTTTAAAGTGTGTAACAAGGC-TTTGAAGGCATG
1 ATTTAAAATCATTTATAAGA-TTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATG
* * * *
14606998 AATGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCTCTTCATGTTTC-CAGAGGCAAAT
65 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCA-ATGCAAAC
* * * *
14607062 ATCCAATTAAGATCTATTGTAACCAAAAATGACAAAAAATTCA
129 ATCAAATTATGATCTGTTTTAACCAAAAATG--AAAAAATTCA
* * * *
14607105 ACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGCAAGTAACTAGGCTTTTAAAGGCAT-A
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGA
* * * * * *
14607169 CGTGAATATAAATGGAGTTTTCTTGTTAATGGATAGCTTTTGCTTCATGTTTC-CTGATGCAAAC
66 -GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTC-AATGCAAAC
* *
14607233 ATCAAATTATGATTTGTTTTAACTAAAAATGAGAAAAATTCA
129 ATCAAATTATGATCTGTTTTAACCAAAAATGA-AAAAATTCA
* * * * * * *
14607275 ATTTTAAACTCATATATAAGATTATAAAACAATTTAAAACGAGTAACAAGGCTTTCGAAGGCATA
1 A-TTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATG
* ** * * **
14607340 AGTGACTATAAATGGACTCTTCTTGTCAATGGATAACTTTTGCTCCATGTTTCTTGATGCAAACA
65 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAATGCAAACA
* ** * * * *
14607405 TCAATTTATTTTCTGTTTTACCCTAAAATTAAAAAATTTA
130 TCAAATTATGATCTGTTTTAACCAAAAATGAAAAAATTCA
* * * * *
14607445 ATTGAAAATCATTTATAA-AGTTATAAAACC-TCTTTAAGCGAGTAACAAGGCTTTCGAAGCCAT
1 ATTTAAAATCATTTATAAGA-TTATAAAACCAT-TTAAAGCGAGTAACTAGGCTTTTGAAGGCAT
* ** * * *
14607508 GAGTGACTATAAATGGACTTTTCTTGGCAATGGATATCTGTT-GCTTCATGTTTGTCGAGGCAAA
64 GAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCT-TTCGCTTCATGTTTCTCAATGCAAA
* * * * *
14607572 CAACCAATTAAGATCT-ATTTAACCAAAAATAAAAAACAAATTCA
128 CATCAAATTATGATCTGTTTTAACCAAAAAT--GAAA-AAATTCA
* * * * ** *
14607616 ACTTAAACTCATTTTTGAGATTATAAAACCATTTAAAGTAAGTAACTAGGCTTTT-AAAGCAGTG
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCA-TG
* * ** ** *
14607680 -GTGACTACAAATGGACTTTTCTTGTTAATGGATGGCTTTTACTTCGCGTTT-TCTAGTGCAAAC
65 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTC-AATGCAAAC
* *
14607743 ATCAAATTATGATCTATTTTAATCAAAAATGAGAAAAATTCA
129 ATCAAATTATGATCTGTTTTAACCAAAAATGA-AAAAATTCA
* * * * *
14607785 ATTTTAAAATCATATATAAGATTATAAAACTATTTAAAGTGAGTAACAAGGCTTTTGTAGGCATG
1 A-TTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATG
** * * * *
14607850 AGTGACTATAAATGGAGATTTCTTGTCAATGGATGGCTTTTGTTTGACAT-TTT-TCAAGGTAAA
65 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTT--CATGTTTCTCAATGCAAA
* *
14607913 CATCCAATTATGATATGTTTTTAACCAAAAATGAAAAAAAGTTCA
128 CATCAAATTATGATCTG-TTTTAACCAAAAATG-AAAAAA-TTCA
* * * * *
14607958 A-CTAAAATCCATTTATAAGATTATAAAATCATTTAAAGCAAGTAATTAGGCTTTTGAAGGTATG
1 ATTTAAAAT-CATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATG
* * * *
14608022 AGTCACTATAAATGGACTCTTCTTATCAATGGATGGCTTTCGCTTTATGTTTCT-AATGCAAACA
65 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAATGCAAACA
* * * *
14608086 TCAAAATATGATTTGTTTTAACAAAAAATTAAAACAATTCA
130 TCAAATTATGATCTGTTTTAACCAAAAATGAAAA-AATTCA
* * * * * * * * * * *
14608127 GTATGAAATCATTTACAA-AGTTATAAAATCACTTAAAGTGAGTGACAAGGCTATCGAAGGCATG
1 ATTTAAAATCATTTATAAGA-TTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATG
* * * * * * *
14608191 TGTGAGTATAAATGGACTTTTATTGTCAATAGATGGCTTTTGCTTCACGTTT-TCTGATGCAAAC
65 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTC-AATGCAAAC
** * * **
14608255 ATCGCATTATAATATGTTTTAATGAAAAATGAGAACAAAATTCA
129 ATCAAATTATGATCTGTTTTAACCAAAAAT--GAA-AAAATTCA
* * * * * * * * ** * *
14608299 ACTTGAAATCATTAATAATATTATAAAACCACTTAAAGTGAGTAATTGGGCTTTCAAAGGTATAA
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGA
* *
14608364 GTGACTATAAATGGACTTTTCTTGTCAGTGGATGGCTTTCGCTTCATGTTTCTCAAGGCAAACAT
66 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAATGCAAACAT
* **
14608429 CAAATTATGATATGTTTTAAAGAAAAATGAAAAAAATTCA
131 CAAATTATGATCTGTTTTAACCAAAAATG-AAAAAATTCA
* * * * **
14608469 ATTTAAAATCATTTATAA-AGTTATAAAACCATGTAAAGTGAGTAACAAGACTTTCAAAGGCATG
1 ATTTAAAATCATTTATAAGA-TTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATG
* * * * * * * *
14608533 AGTGACTATAAATGGACTTTCCTTGTCAATAGATGACTGTCCCTTCATGTTT-TCCGAGGCAAAT
65 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCT-CAATGCAAAC
* * * ***** *
14608597 GTCCAATTATGATATGTTTTAAATGGGAATGAAAAAGAATTTA
129 ATCAAATTATGATCTGTTTTAACCAAAAATG-AAAA-AATTCA
* * ** * *
14608640 ACTTAAAATCATTTATAAGGTTATAAAATTATTTAAAGCAAGTAACTTA-GTTTTTGAAGGCATG
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAAC-TAGGCTTTTGAAGGCATG
* * * * **
14608704 AGTGACTATAAATGGACTTTTATTATCAATGGATGGCTTTCGCTTCAAGTTTCCCAATGTGAACA
65 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAATGCAAACA
*
14608769 TCAAATTATGATTTCT-TTTTAACAAAAAATGAAAGTAAATTCA
130 TCAAATTATGA--TCTGTTTTAACCAAAAATGAAA--AAATTCA
* ** * *
14608812 ATTTAAAGTCATTTATAA-AGTTATAAAACCACGTAAAGCGAGTAACTAGGCCTTTAAAGGCATG
1 ATTTAAAATCATTTATAAGA-TTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATG
* * * ** * * *
14608876 AGTGAATATAAATGGACTGTTCTTGCCAATGGACAGCTTTCACTGCACGTTTC-CTAATGCAAAC
65 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTC-AATGCAAAC
* ** *
14608940 ATCAAATTATGGTCTGTTTTAAAGAAAATTGAAACAAAAAATTCA
129 ATCAAATTATGATCTGTTTTAACCAAAAATG----AAAAAATTCA
* * * ** * * * * * *
14608985 GTTTTAAATCATTTATAA-AGTTATAAAGCCACGTAAAACGTGTAACAAGGCCTTCGAAGGTATG
1 ATTTAAAATCATTTATAAGA-TTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATG
* * * * * *
14609049 AGTGACTATAAATGGATTTTTCTTGTTAATGGATGGCTGTCGCTTCACGTTTCTCGACGCAAACA
65 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAATGCAAACA
* *
14609114 TCCAATTATGATCTG-TTTAACTAAAAATGAAAAACAAATTCA
130 TCAAATTATGATCTGTTTTAACCAAAAATG--AAA-AAATTCA
* * * * * * **
14609156 ACTCAAAATCGTTTATGAGATTATAAAACCATTTAAAG-TAGATAACTAAGCTTACGAAGGCACT
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAG-TAACTAGGCTTTTGAAGGCA-T
* * * ** * * *
14609220 -AGTGACTACAAATGAACTTTTGTTGTCAA-GAGACAGCTTTTGCTTCACGTTTC-CTGATGCAA
64 GAGTGACTATAAATGGACTTTTCTTGTCAATG-GATGGCTTTCGCTTCATGTTTCTC-AATGCAA
* * *
14609282 ACATTAAATTTTGATATGTTTTAACCAAAAATGAGAAAAATTCA
127 ACATCAAATTATGATCTGTTTTAACCAAAAATGA-AAAAATTCA
* * * *** * *
14609326 ATTTTAAAATCATATATAAGATTATAAAACTATCTAAAATAAGTAACAAGGCTTTTGAAGGTATG
1 A-TTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATG
* * * * *
14609391 AATGACTAAAAAT-GAATTTTCTTGTCAATGGATGGCTTTCGCTTCATATTT-TCCAAGGCAAAC
65 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCT-CAATGCAAAC
* * ** *
14609454 ATCCACTTACAATCTGTTTTATCCAAAAATGTTAAAAAATTCA
129 ATCAAATTATGATCTGTTTTAACCAAAAATG--AAAAAATTCA
* * * * * * ** * *
14609497 ACTTACAATCATTTATAAGATAATAAAACCATATAAAGCAAGTAATTAGGCTTTCAAAGGTATCC
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCAT-G
* ** * * * * *
14609562 A-TGACAATAAATATACTTTT-TTGTCAATGGATCGCTTTTGTTTTACGTTTCTCAATGCAAACA
65 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAATGCAAACA
* * * ** *
14609625 TTATATTATGATCTGTTTTCAGAAAAAATGAAAACAACTCA
130 TCAAATTATGATCTGTTTTAACCAAAAATGAAAA-AATTCA
* * * * * *
14609666 ATTTAAAATCATTTATAAAATTATAAAACTACTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGA
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGA
* * * * * * *
14609731 ATGACTATATATGGACATTTT-TTGTCAATGGAAGGCTTTTAG-TTCATGTGTCTTAAGGCAAAC
66 GTGACTATAAATGGAC-TTTTCTTGTCAATGGATGGC-TTTCGCTTCATGTTTCTCAATGCAAAC
* * * *
14609794 AACCAATT-TGATATGTTTTAAACAAAAATGAAAAACCATTCA
129 ATCAAATTATGATCTGTTTTAACCAAAAATGAAAAA--ATTCA
* * * * ** * *
14609836 AGTAAAAATAATATATGGGATTATAAAATCATTTAAAGTGAGT
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGT
14609879 CAATGGATGA
Statistics
Matches: 3960, Mismatches: 890, Indels: 277
0.77 0.17 0.05
Matches are distributed among these distances:
168 30 0.01
169 598 0.15
170 1401 0.35
171 1231 0.31
172 544 0.14
173 152 0.04
174 1 0.00
175 3 0.00
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (169 bp):
ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGA
GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAATGCAAACAT
CAAATTATGATCTGTTTTAACCAAAAATGAAAAAATTCA
Found at i:14605715 original size:341 final size:340
Alignment explanation
Indices: 14604721--14609878 Score: 4069
Period size: 341 Copynumber: 15.1 Consensus size: 340
14604711 NNNAACTTCT
* * * * * *
14604721 ATTTAAAATCATTTATAA-AGTATAAAACCACTTAAAGCGAGTAACAAGCCTGTT-AAAGGTATG
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCT-TTCGAAGGCATG
* ** ** *
14604784 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGCCTTTCACTTCACGTTTCTTGAGGCAAACA
65 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCAGATGCAAACA
* * * * * *
14604849 TGC-AATTATAATCTGTTTTAGCCAAAAAGGAAAACAATTCAACTTAAAATCATTTAT-AAGATT
130 T-CAAATTATGATATGTTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAG-TT
* * * * * * * *
14604912 TTAAAACCATTTACAGCGAGTAATTTGGCTTTTGAAGGCATGAGTGAGTAGAAATGGACTTTTAT
193 ATAAAACCATTTA-AGTGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCT
** * * * * *
14604977 TGTCAATGGATGGCTTTCGCTTCACATTTCTCAATACGAACATCAAATTATGATATGTTTTAA-T
257 TGTCAATGGATGGCTTTCGCTTCATGTTTCTCGATGCAAACATCCAATTATGATTTGTTTTAACT
* *
14605041 GGAAAGTGGAAAAAAAATT-A
322 -AAAAATGG-AAAAAAATTCA
** * * *
14605061 ATTTAAAATCATTTATAA-ATTTATAAAACCATTTAAAATGAGTTACTAGGCTTTTGAAGGCTTG
1 ATTTAAAATCATTTATAAGA-TTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATG
* * ** * * ** **** *
14605125 AATGACTATAAATGGACTTTTCTTATCAGGGGGTGGGTTTCACTTCACGTTTTTTTATGCAAATA
65 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCAGATGCAAACA
* * * * * *
14605190 TCAAATTATGTTCTGTTTGAACTAAAAAT-AAAAAAATTTAATGTAAAATCATTTAT-AAGATTA
130 TCAAATTATGATATGTTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAG-TTA
* * * * **
14605253 TAAAGCCATTTAAAGTGAGTAACTAGGCTTTCCAAGCCATAAGTGACTATAAATAAACTTTTCTT
194 TAAAACCATTT-AAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTT
* * * * ** * *
14605318 ATCAATGGATAGATTTCACTTCACATTTC-CTGATGCAGATATCCAATTATGATTTGTTTTAACT
258 GTCAATGGATGGCTTTCGCTTCATGTTTCTC-GATGCAAACATCCAATTATGATTTGTTTTAACT
* **
14605382 AGAAATGGAAAAATTTTCA
322 AAAAATGGAAAAAAATTCA
* * * * * * * *
14605401 ATTTAAAATCATTTGTAAGATTATAAAATCGTTTAAAGCAACTAACTAGGCTTTTGAAGGTACGA
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGA
* * ** * * **
14605466 GGGACTACAAAAAGACTTTTCTTGTGAATGGATGGCTTTTGCTTCATGTTTCCAGATGCATGCAT
66 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCAGATGCAAACAT
** * * * * *
14605531 CAAAAAATGATCTATTTTAACCAAAAATGAAAAAAATTTTAATTTAAAATCATTAATAAAGTTAC
131 CAAATTATGATATGTTTTAACCAAAAATGAAAAAAA-TTCAATTTAAAATCATTTATAAAGTTAT
*
14605596 AAAACCATTTAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGT
195 AAAACCATTTAAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGT
* * * *
14605661 CAATGGATGG-TTGTCGCTTCATGTTTCTCGAGGCAAACATCCAAGTAAGATTTG-TTTAACCAA
260 CAATGGATGGCTT-TCGCTTCATGTTTCTCGATGCAAACATCCAATTATGATTTGTTTTAACTAA
*
14605724 AAATGAAAAACAAATTCA
324 AAATGGAAAA-AAATTCA
* * * * * * * *
14605742 A-CTCAAATCATTTATGAGATTATAAAACCATTTAGAGTGGGTAACTAGGCTTTCAAAGGCATTA
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGA
* * * * * **
14605806 GTGATTACAAATGGACTTTTCTTATTAATCGATGGCTTTTGCTTCATATTTCCCA-ATGCAAACA
66 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTT-CCAGATGCAAACA
**
14605870 TCAAATTATGATATGTTTTTAATGAAAAAT-AAAAGAAATTCAATTTAAAATCATTTATAAAGTT
130 TCAAATTATGATATG-TTTTAACCAAAAATGAAAA-AAATTCAATTTAAAATCATTTATAAAGTT
* * * * *
14605934 ATGAAACCACTTAAAGCGAGTAACAAGGCTATT-AAAGGCATGAGTGACTATAAATGGACTTTTC
193 ATAAAACCA-TTTAAGTGAGTAACTAGGCT-TTCGAAGGCATGAGTGACTATAAATGGACTTTTC
* * * * * * * * *
14605998 TTGTTAATGGATGCCTTTCACTTCATGTTTCTTGAGGCAAACATGCAATTATAATCTGTTTTAGC
256 TTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGATGCAAACATCCAATTATGATTTGTTTTAAC
*
14606063 CAAAAA-GGAAAAAAATTCA
321 TAAAAATGGAAAAAAATTCA
* * * * * * * * *
14606082 ACTTAAAATCATTTACAAGATTTTACAACCATTTACAGCGAGTAATTTGGCTTTTGAAGGCATTA
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGA
* * * * * *
14606147 GTGAGTATAAATGGACTTTTCTTGTCACTTGATGGCTTTCGCTTCACATTTCTCA-ATACAAACA
66 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTC-CAGATGCAAACA
*** * * *
14606211 TCAAATTATGATATGTTTTAATGGAAAATGGAAAAAATTTAATTTAAAATCATTTATAAATTTAT
130 TCAAATTATGATATGTTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTAT
* * * * * * *
14606276 AAAACCACTTAAAGTGGGTTACTAGGCTTTTGAAGGCTTGAATGACTATAAAAGGACTTTTCTTG
195 AAAACCA-TTTAAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTG
* * * * * * * *
14606341 TCAGTAGG-TGGGTTTCACTTCATGTTTTTTGATGCAAACATCAAATTATG-TTCGGTTTGAACT
259 TCAAT-GGATGGCTTTCGCTTCATGTTTCTCGATGCAAACATCCAATTATGATT-TGTTTTAACT
**
14606404 AAAAATAAAAAAAAATT-A
322 AAAAATGGAAAAAAATTCA
* * * *
14606422 ATGTAAAATCATTTATAAGATTATAAAGCCATTTAAAGCGAGTAACTAGGCTTTCCAAGCCATGA
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGA
* * * * ** * ** *
14606487 GTGACTATAAATGAACTTTGT-TTATCAATGGATAGATTTCACTTCACATTTCTTGATGCAAATA
66 GTGACTATAAATGGACTTT-TCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCAGATGCAAACA
* * * * ** *
14606551 TCCAATTATGATTTGTTTTAACTAGAAATGGAAAAATTTTCAATTTAAAATCATTTGT-AAGATT
130 TCAAATTATGATATGTTTTAACCAAAAAT-GAAAAAAATTCAATTTAAAATCATTTATAAAG-TT
* ** * * * * * *
14606615 ATAAAACCGTTTAAAGCAACTAACTAGGCTTTTGAAGGCACGAGGGACTACAAAAGGACTTTTCT
193 ATAAAACCATTT-AAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCT
* * * ** * ** *
14606680 TGTCAATTGATGGCTTTTGCTTCATGTGTC-CAGATGCATGCAT-AAAAAACTGATATGTTTTAA
257 TGTCAATGGATGGCTTTCGCTTCATGTTTCTC-GATGCAAACATCCAATTA-TGATTTGTTTTAA
* * *
14606743 CCAAAAATGAAAACAAAATTTA
320 CTAAAAATGGAAA-AAAATTCA
* * * * * * *
14606765 ATTTAAAATCATTAATAAGGTTACAAAACCATTTAACGTGAGTAACAAGGCTTTCGAAGGTATGA
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGA
** * *
14606830 GTGACTATAAATGGACTTTTCTTGTCAATGGATAACTTTTGCTTCATGTTTCCTA-AGGCAAACA
66 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCC-AGATGCAAACA
* * * * * * * * *
14606894 TCAAATTATTATTTGTTTTAACCTAAGATTAGAAAAATTTAATTTAAAATCATTTAAAAAGTAAT
130 TCAAATTATGATATGTTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTAT
* * * *
14606959 AAAACCTTTTAAAGTGTGTAACAAGGCTTT-GAAGGCATGAATGACTATAAATGGACTTTTCTTG
195 AAAACCATTT-AAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTG
* * * * * * * *
14607023 TCAATGGATGGCTTTCTCTTCATGTTTC-CAGAGGCAAATATCCAATTAAGATCTATTGTAACCA
259 TCAATGGATGGCTTTCGCTTCATGTTTCTC-GATGCAAACATCCAATTATGATTTGTTTTAACTA
14607087 AAAAT-GACAAAAAATTCA
323 AAAATGGA-AAAAAATTCA
* * * **
14607105 ACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGCAAGTAACTAGGCTTTTAAAGGCAT-A
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGA
* * * * * *
14607169 CGTGAATATAAATGGAGTTTTCTTGTTAATGGATAGCTTTTGCTTCATGTTTCCTGATGCAAACA
66 -GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCAGATGCAAACA
* * * * *
14607234 TCAAATTATGATTTGTTTTAACTAAAAATGAGAAAAATTCAATTTTAAACTCATATAT-AAGATT
130 TCAAATTATGATATGTTTTAACCAAAAATGAAAAAAATTCAA-TTTAAAATCATTTATAAAG-TT
* ** * * *
14607298 ATAAAACAATTTAAAACGAGTAACAAGGCTTTCGAAGGCATAAGTGACTATAAATGGACTCTTCT
193 ATAAAACCATTT-AAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCT
** * * * *
14607363 TGTCAATGGATAACTTTTGCTCCATGTTTCTTGATGCAAACAT-CAATTTAT-TTTCTGTTTTAC
257 TGTCAATGGATGGCTTTCGCTTCATGTTTCTCGATGCAAACATCCAA-TTATGATT-TGTTTTA-
* * *
14607426 CCT-AAAAT--TAAAAAATTTA
319 ACTAAAAATGGAAAAAAATTCA
* * * *
14607445 ATTGAAAATCATTTATAA-AGTTATAAAACC-TCTTTAAGCGAGTAACAAGGCTTTCGAAGCCAT
1 ATTTAAAATCATTTATAAGA-TTATAAAACCAT-TTAAAGCGAGTAACTAGGCTTTCGAAGGCAT
* ** * * * *
14607508 GAGTGACTATAAATGGACTTTTCTTGGCAATGGATATCTGTTGCTTCATGTTTGTC-GAGGCAAA
64 GAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTT-CCAGATGCAAA
* * * * * * * * **
14607572 CAACCAATTAAGATCT-ATTTAACCAAAAATAAAAAACAAATTCAACTTAAACTCATTT-TTGAG
128 CATCAAATTATGATATGTTTTAACCAAAAAT-GAAAA-AAATTCAATTTAAAATCATTTATAAAG
* * * *
14607635 ATTATAAAACCATTTAAAGTAAGTAACTAGGCTTT-TAAAGCAGTG-GTGACTACAAATGGACTT
191 -TTATAAAACCATTT-AAGTGAGTAACTAGGCTTTCGAAGGCA-TGAGTGACTATAAATGGACTT
* ** ** * * * *
14607698 TTCTTGTTAATGGATGGCTTTTACTTCGCGTTT-TCTAGTGCAAACATCAAATTATGATCTATTT
253 TTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGA-TGCAAACATCCAATTATGATTTGTTT
*
14607762 TAA-TCAAAAAT-GAGAAAAATTCA
317 TAACT-AAAAATGGAAAAAAATTCA
* * * * * *
14607785 ATTTTAAAATCATATATAAGATTATAAAACTATTTAAAGTGAGTAACAAGGCTTTTGTAGGCATG
1 A-TTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATG
** * * * * * *
14607850 AGTGACTATAAATGGAGATTTCTTGTCAATGGATGGCTTTTGTTTGACATTTTTCA-AGGTAAAC
65 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCAC-GTTTCCAGATGCAAAC
* *
14607914 ATCCAATTATGATATGTTTTTAACCAAAAATGAAAAAAAGTTCAA-CTAAAATCCATTTAT-AAG
129 ATCAAATTATGATATG-TTTTAACCAAAAATGAAAAAAA-TTCAATTTAAAAT-CATTTATAAAG
* ** * * * * *
14607977 ATTATAAAATCATTTAAAGCAAGTAATTAGGCTTTTGAAGGTATGAGTCACTATAAATGGACTCT
191 -TTATAAAACCATTT-AAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTT
* * * * *
14608042 TCTTATCAATGGATGGCTTTCGCTTTATGTTTCT-AATGCAAACATCAAAATATGATTTGTTTTA
254 TCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGATGCAAACATCCAATTATGATTTGTTTTA
* * *
14608106 ACAAAAAAT-TAAAACAATTCA
319 ACTAAAAATGGAAAAAAATTCA
* * * * * * * * * *
14608127 GTATGAAATCATTTACAA-AGTTATAAAATCACTTAAAGTGAGTGACAAGGCTATCGAAGGCATG
1 ATTTAAAATCATTTATAAGA-TTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATG
* * * * * *
14608191 TGTGAGTATAAATGGACTTTTATTGTCAATAGATGGCTTTTGCTTCACGTTTTCTGATGCAAACA
65 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCAGATGCAAACA
** * ** * * *
14608256 TCGCATTATAATATGTTTTAATGAAAAATGAGAACAAAATTCAACTTGAAATCATTAATAATA-T
130 TCAAATTATGATATGTTTTAACCAAAAATGA-AA-AAAATTCAATTTAAAATCATTTATAA-AGT
* * * * * *
14608320 TATAAAACCACTTAAAGTGAGTAATTGGGCTTTCAAAGGTATAAGTGACTATAAATGGACTTTTC
192 TATAAAACCA-TTTAAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTC
* * * * * *
14608385 TTGTCAGTGGATGGCTTTCGCTTCATGTTTCTCAAGGCAAACATCAAATTATGATATGTTTTAAA
256 TTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGATGCAAACATCCAATTATGATTTGTTTTAAC
*
14608450 GAAAAAT-GAAAAAAATTCA
321 TAAAAATGGAAAAAAATTCA
* * * * *
14608469 ATTTAAAATCATTTATAA-AGTTATAAAACCATGTAAAGTGAGTAACAAGACTTTCAAAGGCATG
1 ATTTAAAATCATTTATAAGA-TTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATG
* * * * ** * * *
14608533 AGTGACTATAAATGGACTTTCCTTGTCAATAGATGACTGTCCCTTCATGTTTTCC-GAGGCAAAT
65 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACG-TTTCCAGATGCAAAC
* * ***** * * *
14608597 GTCCAATTATGATATGTTTTAAATGGGAATGAAAAAGAATTTAACTTAAAATCATTTATAAGGTT
129 ATCAAATTATGATATGTTTTAACCAAAAATGAAAAA-AATTCAATTTAAAATCATTTATAAAGTT
** ** * * *
14608662 ATAAAATTATTTAAAGCAAGTAACTTA-GTTTTTGAAGGCATGAGTGACTATAAATGGACTTTTA
193 ATAAAACCATTT-AAGTGAGTAAC-TAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTC
* * * * ** * *
14608726 TTATCAATGGATGGCTTTCGCTTCAAGTTTCCCAATGTGAACATCAAATTATGATTTCTTTTTAA
256 TTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGATGCAAACATCCAATTATGATTT-GTTTTAA
* *
14608791 CAAAAAAT-GAAAGTAAATTCA
320 CTAAAAATGGAAA-AAAATTCA
* ** *
14608812 ATTTAAAGTCATTTATAA-AGTTATAAAACCACGTAAAGCGAGTAACTAGGCCTTT-AAAGGCAT
1 ATTTAAAATCATTTATAAGA-TTATAAAACCATTTAAAGCGAGTAACTAGG-CTTTCGAAGGCAT
* * * ** ** *
14608875 GAGTGAATATAAATGGACTGTTCTTGCCAATGGACAGCTTTCACTGCACGTTTCCTA-ATGCAAA
64 GAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCC-AGATGCAAA
* * ** * * *
14608939 CATCAAATTATGGTCTGTTTTAAAGAAAATTGAAACAAAAAATTCAGTTTTAAATCATTTATAAA
128 CATCAAATTATGATATGTTTTAACCAAAAATG--A-AAAAAATTCAATTTAAAATCATTTATAAA
* * * ** * * * * *
14609004 GTTATAAAGCCACGTAAAACGTGTAACAAGGCCTTCGAAGGTATGAGTGACTATAAATGGATTTT
190 GTTATAAAACCA-TTTAAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTT
* * * * *
14609069 TCTTGTTAATGGATGGCTGTCGCTTCACGTTTCTCGACGCAAACATCCAATTATGATCTG-TTTA
254 TCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGATGCAAACATCCAATTATGATTTGTTTTA
*
14609133 ACTAAAAATGAAAAACAAATTCA
319 ACTAAAAATGGAAAA-AAATTCA
* * * * * * *
14609156 ACTCAAAATCGTTTATGAGATTATAAAACCATTTAAAG-TAGATAACTAAGCTTACGAAGGCACT
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAG-TAACTAGGCTTTCGAAGGCA-T
* * * ** *
14609220 -AGTGACTACAAATGAACTTTTGTTGTCAA-GAGACAGCTTTTGCTTCACGTTTCCTGATGCAAA
64 GAGTGACTATAAATGGACTTTTCTTGTCAATG-GATGGCTTTTGCTTCACGTTTCCAGATGCAAA
* * * *
14609283 CATTAAATTTTGATATGTTTTAACCAAAAATGAGAAAAATTCAATTTTAAAATCATATAT-AAGA
128 CATCAAATTATGATATGTTTTAACCAAAAATGAAAAAAATTCAA-TTTAAAATCATTTATAAAG-
* * * * * * * * * *
14609347 TTATAAAACTATCTAAAATAAGTAACAAGGCTTTTGAAGGTATGAATGACTAAAAAT-GAATTTT
191 TTATAAAACCAT-TTAAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTT
* * * * ** *
14609411 CTTGTCAATGGATGGCTTTCGCTTCATATTT-TCCAAGGCAAACATCCACTTACAATCTGTTTTA
255 CTTGTCAATGGATGGCTTTCGCTTCATGTTTCT-CGATGCAAACATCCAATTATGATTTGTTTTA
* * **
14609475 TCCAAAAATGTTAAAAAATTCA
319 ACTAAAAATGGAAAAAAATTCA
* * * * * * * * *
14609497 ACTTACAATCATTTATAAGATAATAAAACCATATAAAGCAAGTAATTAGGCTTTCAAAGGTATCC
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCAT-G
* ** * * *
14609562 A-TGACAATAAATATACTTTT-TTGTCAATGGATCGCTTTTGTTTTACGTTTCTCA-ATGCAAAC
65 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTC-CAGATGCAAAC
* * * * ** * * *
14609624 ATTATATTATGATCTGTTTTCAGAAAAAATGAAAACAACTCAATTTAAAATCATTTATAAAATTA
129 ATCAAATTATGATATGTTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTA
* * * * *
14609689 TAAAACTACTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAATGACTATATATGGACATTTT-T
194 TAAAACCA-TTTAAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGAC-TTTTCT
* * * ** * * *
14609753 TGTCAATGGAAGGCTTTTAG-TTCATGTGTCTTAAGGCAAACAACCAATT-TGATATGTTTTAAA
257 TGTCAATGGATGGC-TTTCGCTTCATGTTTCTCGATGCAAACATCCAATTATGATTTGTTTT-AA
*
14609816 C-AAAAAT-GAAAAACCATTCA
320 CTAAAAATGGAAAAA-AATTCA
* * * * ** * *
14609836 AGTAAAAATAATATATGGGATTATAAAATCATTTAAAGTGAGT
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGT
14609879 CAATGGATGA
Statistics
Matches: 3875, Mismatches: 812, Indels: 263
0.78 0.16 0.05
Matches are distributed among these distances:
337 1 0.00
338 6 0.00
339 211 0.05
340 1195 0.31
341 1308 0.34
342 556 0.14
343 343 0.09
344 133 0.03
345 117 0.03
346 5 0.00
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (340 bp):
ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGA
GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCAGATGCAAACAT
CAAATTATGATATGTTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATA
AAACCATTTAAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTC
AATGGATGGCTTTCGCTTCATGTTTCTCGATGCAAACATCCAATTATGATTTGTTTTAACTAAAA
ATGGAAAAAAATTCA
Found at i:14605764 original size:511 final size:512
Alignment explanation
Indices: 14604721--14609878 Score: 4322
Period size: 511 Copynumber: 10.1 Consensus size: 512
14604711 NNNAACTTCT
* * * * * * * *
14604721 ATTTAAAATCATTTATAA-AGTATAAAACCACTTAAAGCGAGTAACAAGCCTGTT-AAAGGTATG
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACTAGGCT-TTCGAAGGCATA
* * * * *
14604784 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGCCTTTCACTTCACGTTTCTTGAGGCAAACA
65 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAGGCAAACA
* * * * * * *
14604849 TGC-AATTATAATCTGTTTTAGCCAAAAAGGAAAACAATTCAACTTAAAATCATTTATAAGA-TT
130 T-CAAATTATGATTTGTTTTAACTAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAGAGTT
* * * * * * *
14604912 TTAAAACCATTTACAGCGAGTAATTTGGCTTTTGAAGGCATGAGTGAGTAGAAATGGACTTTTAT
194 ATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCT
** * * * *
14604977 TGTCAATGGATGGCTTTCGCTTCACATTTCTCA-ATACGAACATCAAATTATGATATGTTTTAAT
259 TGTCAATGGATGGCTTTCGCTTCATGTTTC-CAGATGCAAACATCAAATTATGATCTGTTTTAAC
** * * *
14605041 GGAAAGTGGAAAAAAAATT-AATTTAAAATCATTTATAAA-TTTATAAAACCATTTAAAATGAGT
323 CAAAAAT-G-AAAAAAATTCAATTTAAAATCATTTATAAAGATTATAAAACCATTTAAAGTGAGT
* * * * ** * * **
14605104 TACTAGGCTTTTGAAGGCTTGAATGACTATAAATGGACTTTTCTTATCAGGGGGTGGGTTTCACT
386 AACTAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCT
* ** * * * *
14605169 TCACGTTTTTTTATGCAAATATCAAATTATG-TTCTGTTTGAACTAAAAAT-AAAAAAATTTA
451 TCACGTTTCTCGATGCAAACATCAAATTATGATT-TGTTTTAACCAAAAATGAAAAAAATTCA
* * * *
14605230 ATGTAAAATCATTTATAAGATTATAAAGCCATTTAAAGTGAGTAACTAGGCTTTCCAAGCCATAA
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACTAGGCTTTCGAAGGCATAA
** * * * * ** * * * *
14605295 GTGACTATAAATAAACTTTTCTTATCAATGGATAGATTTCACTTCACATTTCCTGATGCAGATAT
66 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAGGCAAACAT
* * ** *
14605360 CCAATTATGATTTGTTTTAACTAGAAATGGAAAAATTTTCAATTTAAAATCATTTGTAAGA-TTA
131 CAAATTATGATTTGTTTTAACTAAAAAT-GAAAAAAATTCAATTTAAAATCATTTATAAGAGTTA
* * * * * * * * **
14605424 TAAAATCGTTTAAAGCAACTAACTAGGCTTTTGAAGGTACGAGGGACTACAAAAAGACTTTTCTT
195 TAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTT
* * ** ** *
14605489 GTGAATGGATGGCTTTTGCTTCATGTTTCCAGATGCATGCATCAAAAAATGATCTATTTTAACCA
260 GTCAATGGATGGCTTTCGCTTCATGTTTCCAGATGCAAACATCAAATTATGATCTGTTTTAACCA
* * *
14605554 AAAATGAAAAAAATTTTAATTTAAAATCATTAATAAAG-TTACAAAACCATTT-AAGTGAGTAAC
325 AAAATGAAAAAAA-TTCAATTTAAAATCATTTATAAAGATTATAAAACCATTTAAAGTGAGTAAC
* * *
14605617 AAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGG-TTGTCGCTTC
389 TAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTT-TTGCTTC
* * * * *
14605681 ATGTTTCTCGAGGCAAACATCCAAGTAAGATTTG-TTTAACCAAAAATGAAAAACAAATTCA
453 ACGTTTCTCGATGCAAACATCAAATTATGATTTGTTTTAACCAAAAATG-AAAA-AAATTCA
* * * * * * *
14605742 A-CTCAAATCATTTATGAGATTATAAAACCATTTAGAGTGGGTAACTAGGCTTTCAAAGGCATTA
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACTAGGCTTTCGAAGGCATAA
* * * * * * * * *
14605806 GTGATTACAAATGGACTTTTCTTATTAATCGATGGCTTTTGCTTCATATTTCCCAATGCAAACAT
66 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAGGCAAACAT
*
14605871 CAAATTATGATATGTTTTTAA-TGAAAAAT-AAAAGAAATTCAATTTAAAATCATTTATAA-AGT
131 CAAATTATGATTTG-TTTTAACT-AAAAATGAAAA-AAATTCAATTTAAAATCATTTATAAGAGT
* * * * *
14605933 TATGAAACCACTTAAAGCGAGTAACAAGGCTATTAAAGGCATGAGTGACTATAAATGGACTTTTC
193 TATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTC
* * * ** * * *
14605998 TTGTTAATGGATGCCTTTCACTTCATGTTTCTTGAGGCAAACATGC-AATTATAATCTGTTTTAG
258 TTGTCAATGGATGGCTTTCGCTTCATGTTTCCAGATGCAAACAT-CAAATTATGATCTGTTTTAA
* * * * * * *
14606062 CCAAAAAGGAAAAAAATTCAACTTAAAATCATTTA-CAAGATTTTACAACCATTTACAGCGAGTA
322 CCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGATTATAAAACCATTTAAAGTGAGTA
* * * * * * *
14606126 ATTTGGCTTTTGAAGGCATTAGTGAGTATAAATGGACTTTTCTTGTCACTTGATGGCTTTCGCTT
387 ACTAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTT
* * * * *** * *
14606191 CACATTTCTCAATACAAACATCAAATTATGATATGTTTTAATGGAAAATGGAAAAAATTTA
452 CACGTTTCTCGATGCAAACATCAAATTATGATTTGTTTTAACCAAAAATGAAAAAAATTCA
* * * * *
14606252 ATTTAAAATCATTTATAA-ATTTATAAAACCACTTAAAGTGGGTTACTAGGCTTTTGAAGGCTTG
1 ATTTAAAATCATTTATAAGA-TTATAAAACCATTTAAAGTGAGTAACTAGGCTTTCGAAGGCAT-
* * * * ** * *
14606316 AA-TGACTATAAAAGGACTTTTCTTGTCAGTAGG-TGGGTTTCACTTCATGTTTTTTGATGCAAA
64 AAGTGACTATAAATGGACTTTTCTTGTCAAT-GGATGGCTTTCGCTTCATGTTTCCTAAGGCAAA
* * * *
14606379 CATCAAATTATG-TTCGGTTTGAACTAAAAATAAAAAAAAATT-AATGTAAAATCATTTATAAGA
128 CATCAAATTATGATT-TGTTTTAACTAAAAAT-GAAAAAAATTCAATTTAAAATCATTTATAAGA
* ** * *
14606442 -TTATAAAGCCATTTAAAGCGAGTAACTAGGCTTTCCAAGCCATGAGTGACTATAAATGAACTTT
191 GTTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTT
* * * * ** ** * * *
14606506 GT-TTATCAATGGATAGATTTCACTTCACATTTCTTGATGCAAATATCCAATTATGATTTGTTTT
256 -TCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCAGATGCAAACATCAAATTATGATCTGTTTT
* * ** * * **
14606570 AACTAGAAATGGAAAAATTTTCAATTTAAAATCATTTGT-AAGATTATAAAACCGTTTAAAGCAA
320 AACCAAAAAT-GAAAAAAATTCAATTTAAAATCATTTATAAAGATTATAAAACCATTTAAAGTGA
* * * * * *
14606634 CTAACTAGGCTTTTGAAGGCACGAGGGACTACAAAAGGACTTTTCTTGTCAATTGATGGCTTTTG
384 GTAACTAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTG
* * ** ** *
14606699 CTTCATGTGTC-CAGATGCATGCAT-AAAAAACTGATATGTTTTAACCAAAAATGAAAACAAAAT
449 CTTCACGTTTCTC-GATGCAAACATCAAATTA-TGATTTGTTTTAACCAAAAATG-AAA-AAAAT
*
14606762 TTA
510 TCA
* * * * * * *
14606765 ATTTAAAATCATTAATAAGGTTACAAAACCATTTAACGTGAGTAACAAGGCTTTCGAAGGTATGA
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACTAGGCTTTCGAAGGCATAA
** *
14606830 GTGACTATAAATGGACTTTTCTTGTCAATGGATAACTTTTGCTTCATGTTTCCTAAGGCAAACAT
66 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAGGCAAACAT
* * * * * * *
14606895 CAAATTATTATTTGTTTTAACCT-AAGATTAGAAAAATTTAATTTAAAATCATTTA-AAAAGTAA
131 CAAATTATGATTTGTTTTAA-CTAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAGAGTTA
* * * * *
14606958 TAAAACCTTTTAAAGTGTGTAACAAGGC-TTTGAAGGCATGAATGACTATAAATGGACTTTTCTT
195 TAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTT
* * * * * * *
14607022 GTCAATGGATGGCTTTCTCTTCATGTTTCCAGAGGCAAATATCCAATTAAGATCTATTGTAACCA
260 GTCAATGGATGGCTTTCGCTTCATGTTTCCAGATGCAAACATCAAATTATGATCTGTTTTAACCA
* * **
14607087 AAAATGACAAAAAATTCAACTTAAAATCATTTAT-GAGATTATAAAACCATTTAAAGCAAGTAAC
325 AAAATGA-AAAAAATTCAATTTAAAATCATTTATAAAGATTATAAAACCATTTAAAGTGAGTAAC
* * * * *
14607151 TAGGCTTTTAAAGGCAT-ACGTGAATATAAATGGAGTTTTCTTGTTAATGGATAGCTTTTGCTTC
389 TAGGCTTTTGAAGGCATGA-GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTC
* * *
14607215 ATGTTTC-CTGATGCAAACATCAAATTATGATTTGTTTTAACTAAAAATGAGAAAAATTCA
453 ACGTTTCTC-GATGCAAACATCAAATTATGATTTGTTTTAACCAAAAATGAAAAAAATTCA
* * * ** *
14607275 ATTTTAAACTCATATATAAGATTATAAAACAATTTAAAACGAGTAACAAGGCTTTCGAAGGCATA
1 A-TTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACTAGGCTTTCGAAGGCATA
* ** * * * * *
14607340 AGTGACTATAAATGGACTCTTCTTGTCAATGGATAACTTTTGCTCCATGTTTCTTGATGCAAACA
65 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAGGCAAACA
* * * * * *
14607405 TCAATTTAT-TTTCTGTTTTACCCT-AAAAT-TAAAAAATTTAATTGAAAATCATTTATAA-AGT
130 TCAAATTATGATT-TGTTTTA-ACTAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAGAGT
* * * *
14607466 TATAAAACC-TCTTTAAGCGAGTAACAAGGCTTTCGAAGCCATGAGTGACTATAAATGGACTTTT
193 TATAAAACCAT-TTAAAGCGAGTAACTAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTT
* ** * * * * * *
14607530 CTTGGCAATGGATATCTGTT-GCTTCATGTTTGTC-GAGGCAAACAACCAATTAAGATCT-ATTT
257 CTTGTCAATGGATGGCT-TTCGCTTCATGTTT-CCAGATGCAAACATCAAATTATGATCTGTTTT
* * * ** *
14607592 AACCAAAAATAAAAAACAAATTCAACTTAAACTCATTT-TTGAGATTATAAAACCATTTAAAGTA
320 AACCAAAAAT-GAAAA-AAATTCAATTTAAAATCATTTATAAAGATTATAAAACCATTTAAAGTG
* * *
14607656 AGTAACTAGGCTTTT-AAAGCAGTG-GTGACTACAAATGGACTTTTCTTGTTAATGGATGGCTTT
383 AGTAACTAGGCTTTTGAAGGCA-TGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTT
* * * * * * *
14607719 TACTTCGCGTTT-TCTAGTGCAAACATCAAATTATGATCTATTTTAATCAAAAATGAGAAAAATT
447 TGCTTCACGTTTCTCGA-TGCAAACATCAAATTATGATTTGTTTTAACCAAAAATGAAAAAAATT
14607783 CA
511 CA
* * * * * *
14607785 ATTTTAAAATCATATATAAGATTATAAAACTATTTAAAGTGAGTAACAAGGCTTTTGTAGGCATG
1 A-TTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACTAGGCTTTCGAAGGCATA
** * * * *
14607850 AGTGACTATAAATGGAGATTTCTTGTCAATGGATGGCTTTTGTTTGACAT-TTTTC-AAGGTAAA
65 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTT--CATGTTTCCTAAGGCAAA
* * * *
14607913 CATCCAATTATGATATGTTTTTAACCAAAAATGAAAAAAAGTTCAA-CTAAAATCCATTTATAAG
128 CATCAAATTATGATTTG-TTTTAACTAAAAATGAAAAAAA-TTCAATTTAAAAT-CATTTATAAG
* * * * * *
14607977 A-TTATAAAATCATTTAAAGCAAGTAATTAGGCTTTTGAAGGTATGAGTCACTATAAATGGACTC
190 AGTTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTT
* * * * *
14608041 TTCTTATCAATGGATGGCTTTCGCTTTATGTTTCTA-ATGCAAACATCAAAATATGATTTGTTTT
255 TTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCAGATGCAAACATCAAATTATGATCTGTTTT
* * * * * * * * *
14608105 AACAAAAAATTAAAACAATTCAGTATGAAATCATTTACAAAG-TTATAAAATCACTTAAAGTGAG
320 AACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGATTATAAAACCATTTAAAGTGAG
* * * * * * * *
14608169 TGACAAGGCTATCGAAGGCATGTGTGAGTATAAATGGACTTTTATTGTCAATAGATGGCTTTTGC
385 TAACTAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGC
** * * **
14608234 TTCACGTTT-TCTGATGCAAACATCGCATTATAATATGTTTTAATGAAAAATGAGAACAAAATTC
450 TTCACGTTTCTC-GATGCAAACATCAAATTATGATTTGTTTTAACCAAAAATGA-AA-AAAATTC
14608298 A
512 A
* * * * * * * * *
14608299 ACTTGAAATCATTAATAATATTATAAAACCACTTAAAGTGAGTAATTGGGCTTTCAAAGGTATAA
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACTAGGCTTTCGAAGGCATAA
*
14608364 GTGACTATAAATGGACTTTTCTTGTCAGTGGATGGCTTTCGCTTCATGTTT-CTCAAGGCAAACA
66 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCT-AAGGCAAACA
* **
14608428 TCAAATTATGATATGTTTTAAAGAAAAATGAAAAAAATTCAATTTAAAATCATTTATAA-AGTTA
130 TCAAATTATGATTTGTTTTAACTAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAGAGTTA
* * * * ** *
14608492 TAAAACCATGTAAAGTGAGTAACAAGACTTTCAAAGGCATGAGTGACTATAAATGGACTTTCCTT
195 TAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTT
* * * * * ** * * **
14608557 GTCAATAGATGACTGTCCCTTCATGTTTTCC-GAGGCAAATGTCCAATTATGATATGTTTTAAAT
260 GTCAATGGATGGCTTTCGCTTCATG-TTTCCAGATGCAAACATCAAATTATGATCTGTTTTAACC
*** * * * ** **
14608621 GGGAATGAAAAAGAATTTAACTTAAAATCATTTAT-AAGGTTATAAAATTATTTAAAGCAAGTAA
324 AAAAATGAAAAA-AATTCAATTTAAAATCATTTATAAAGATTATAAAACCATTTAAAGTGAGTAA
* * * *
14608685 CTTA-GTTTTTGAAGGCATGAGTGACTATAAATGGACTTTTATTATCAATGGATGGCTTTCGCTT
388 C-TAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTT
* * * ** * * *
14608749 CAAGTTTCCCAATGTGAACATCAAATTATGATTTCTTTTTAACAAAAAATGAAAGTAAATTCA
452 CACGTTTCTCGATGCAAACATCAAATTATGATTT-GTTTTAACCAAAAATGAAA-AAAATTCA
* ** * *
14608812 ATTTAAAGTCATTTATAA-AGTTATAAAACCACGTAAAGCGAGTAACTAGGCCTTT-AAAGGCAT
1 ATTTAAAATCATTTATAAGA-TTATAAAACCATTTAAAGTGAGTAACTAGG-CTTTCGAAGGCAT
* * * * ** * * * *
14608875 GAGTGAATATAAATGGACTGTTCTTGCCAATGGACAGCTTTCACTGCACGTTTCCTAATGCAAAC
64 AAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAGGCAAAC
* * ** * * *
14608940 ATCAAATTATGGTCTGTTTTAAAGAAAATTGAAACAAAAAATTCAGTTTTAAATCATTTATAA-A
129 ATCAAATTATGATTTGTTTTAACTAAAAATG--A-AAAAAATTCAATTTAAAATCATTTATAAGA
* ** * * * * * * *
14609004 GTTATAAAGCCACGTAAAACGTGTAACAAGGCCTTCGAAGGTATGAGTGACTATAAATGGATTTT
191 GTTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTT
* * * * *
14609069 TCTTGTTAATGGATGGCTGTCGCTTCACGTTTCTC-GACGCAAACATCCAATTATGATCTG-TTT
256 TCTTGTCAATGGATGGCTTTCGCTTCATGTTTC-CAGATGCAAACATCAAATTATGATCTGTTTT
* * * * *
14609132 AACTAAAAATGAAAAACAAATTCAACTCAAAATCGTTTAT-GAGATTATAAAACCATTTAAAGT-
320 AACCAAAAATG-AAAA-AAATTCAATTTAAAATCATTTATAAAGATTATAAAACCATTTAAAGTG
* ** * * * **
14609195 AGATAACTAAGCTTACGAAGGCACT-AGTGACTACAAATGAACTTTTGTTGTCAA-GAGACAGCT
383 AG-TAACTAGGCTTTTGAAGGCA-TGAGTGACTATAAATGGACTTTTCTTGTCAATG-GATGGCT
* * * *
14609258 TTTGCTTCACGTTTC-CTGATGCAAACATTAAATTTTGATATGTTTTAACCAAAAATGAGAAAAA
445 TTTGCTTCACGTTTCTC-GATGCAAACATCAAATTATGATTTGTTTTAACCAAAAATGAAAAAAA
14609322 TTCA
509 TTCA
* * * * * * * *
14609326 ATTTTAAAATCATATATAAGATTATAAAACTATCTAAAATAAGTAACAAGGCTTTTGAAGGTATG
1 A-TTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACTAGGCTTTCGAAGGCAT-
* * *
14609391 AA-TGACTAAAAAT-GAATTTTCTTGTCAATGGATGGCTTTCGCTTCATATTTTCC-AAGGCAAA
64 AAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCAT-GTTTCCTAAGGCAAA
* * ** * * * * * *
14609453 CATCCACTTACAATCTGTTTTATCCAAAAATGTTAAAAAATTCAACTTACAATCATTTATAAGA-
128 CATCAAATTATGATTTGTTTTAACTAAAAATG-AAAAAAATTCAATTTAAAATCATTTATAAGAG
* * * * ** * * * **
14609517 TAATAAAACCATATAAAGCAAGTAATTAGGCTTTCAAAGGTATCCA-TGACAATAAATATACTTT
192 TTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCAT-GAGTGACTATAAATGGACTTT
* * * * * * *
14609581 T-TTGTCAATGGATCGCTTTTGTTTTACGTTTCTCA-ATGCAAACATTATATTATGATCTGTTTT
256 TCTTGTCAATGGATGGCTTTCGCTTCATGTTTC-CAGATGCAAACATCAAATTATGATCTGTTTT
* ** * * * *
14609644 CAGAAAAAATGAAAACAACTCAATTTAAAATCATTTATAAA-ATTATAAAACTACTTAAAGTGAG
320 AACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGATTATAAAACCATTTAAAGTGAG
* * * * *
14609708 TAACAAGGCTTTCGAAGGCATGAATGACTATATATGGACATTTT-TTGTCAATGGAAGGCTTTTA
385 TAACTAGGCTTTTGAAGGCATGAGTGACTATAAATGGAC-TTTTCTTGTCAATGGATGGCTTTT-
* * ** * * * * * *
14609772 G-TTCATGTGTCTTAAGGCAAACAACCAATT-TGATATGTTTTAAACAAAAATGAAAAACCATTC
448 GCTTCACGTTTCTCGATGCAAACATCAAATTATGATTTGTTTTAACCAAAAATGAAAAA-AATTC
14609835 A
512 A
* * * * ** *
14609836 AGTAAAAATAATATATGGGATTATAAAATCATTTAAAGTGAGT
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGT
14609879 CAATGGATGA
Statistics
Matches: 3753, Mismatches: 769, Indels: 254
0.79 0.16 0.05
Matches are distributed among these distances:
509 104 0.03
510 772 0.21
511 1245 0.33
512 551 0.15
513 634 0.17
514 105 0.03
515 95 0.03
516 245 0.07
517 2 0.00
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (512 bp):
ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACTAGGCTTTCGAAGGCATAA
GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAGGCAAACAT
CAAATTATGATTTGTTTTAACTAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAGAGTTAT
AAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTG
TCAATGGATGGCTTTCGCTTCATGTTTCCAGATGCAAACATCAAATTATGATCTGTTTTAACCAA
AAATGAAAAAAATTCAATTTAAAATCATTTATAAAGATTATAAAACCATTTAAAGTGAGTAACTA
GGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACG
TTTCTCGATGCAAACATCAAATTATGATTTGTTTTAACCAAAAATGAAAAAAATTCA
Found at i:14610223 original size:171 final size:171
Alignment explanation
Indices: 14609939--14610627 Score: 588
Period size: 171 Copynumber: 4.0 Consensus size: 171
14609929 TCTATTTTAG
* * * * * *
14609939 TGAAAAACAATTCAATTTAAAATCATTTATAA-AGCTATAAAGCCACTTAAAGCAAGTAAC-AAG
1 TGAAAAAAAATTTAACTTAAAATCATTTATAAGA-TTATAAAACCATTTAAAGCAAGTAACTAAG
* * * * * * *
14610002 CGTCCAAAGGTATGAGTGACTATAAATGGACATTTCTTGTTAACGGATGGCTTTCACTTCACGTT
65 CTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTT
* *
14610067 TCCTTATATAAACATCCAATTATGATATGTTTTAACCAAAAA
130 TCCTAATACAAACATCCAATTATGATATGTTTTAACCAAAAA
** ** * * * * *
14610109 TGAAAATCAATTTTGCTTTAAATCATTTTTGAGATTATAAAACCTTTTAAAGCAAGTAACTAGGC
1 TGAAAAAAAATTTAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACTAAGC
* * *
14610174 TTTTAAAGGCATGAGTGACTATAAATGGACTTTTGTTGTCAATGGATGGCTTTCGCTTCATGTTT
66 TTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTT
* ** * * **
14610239 -TTCAAGGCAAACTTCCAATTATGATATGTATTAACCTGAAA
131 CCT-AATACAAACATCCAATTATGATATGTTTTAACCAAAAA
* * * * ** **
14610280 TGAAAAAAAATTCAACTCAAAATCATTTATAAGATTATACAACCATTAAAAAAAAGTAACTTGGC
1 TGAAAAAAAATTTAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACTAAGC
* * * ** * * * * *
14610345 TTGCGAAGGTATGAGTGACTA-AAATAAACTTTTCTTATTAGTGGATGGCTTTTGTTTCACGTTT
66 TTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTT
* * * * *
14610409 CCCAATGCAAACAAT--AAGTTATCATTTGTTTTAACGAAAAA
131 CCTAATACAAAC-ATCCAA-TTATGATATGTTTTAACCAAAAA
* * * * * * * *
14610450 TGAAAAAAAAATTAACTTAAAATCATTTATAAAAATATAAAATCACTTAAAGCGAGCAA-TACAA
1 TGAAAAAAAATTTAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACTA-AG
* * * *
14610514 CTTTCAAAGGCATGAGTGACTATAAATTGACTTTTCTTGTCAATGGATGACTTTTGCTTCATGTT
65 CTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACG-T
* * * *
14610579 TTCC-AAGGA-AAACATCCATTTATGATCTATTTTAACCAAAAA
129 TTCCTAA-TACAAACATCCAATTATGATATGTTTTAACCAAAAA
14610621 T-AAAAAA
1 TGAAAAAA
14610628 TACTTCTGTG
Statistics
Matches: 403, Mismatches: 104, Indels: 24
0.76 0.20 0.05
Matches are distributed among these distances:
169 3 0.01
170 179 0.44
171 215 0.53
172 6 0.01
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.33
Consensus pattern (171 bp):
TGAAAAAAAATTTAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACTAAGC
TTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTT
CCTAATACAAACATCCAATTATGATATGTTTTAACCAAAAA
Found at i:14611968 original size:43 final size:43
Alignment explanation
Indices: 14611849--14611970 Score: 145
Period size: 43 Copynumber: 2.8 Consensus size: 43
14611839 GGATTCAGCT
* * * ****
14611849 ATGTGCAAGTAGGGAGTGCGCATAAGCCGATGATGACCCGGTT
1 ATGTGCGAGTAGGGAGTGTGCATAAGCCGGTGATGACCCAACC
* *
14611892 ATGTGCGAGTAGGGAGTGTGCATAAACCAGTGATGACCCAACC
1 ATGTGCGAGTAGGGAGTGTGCATAAGCCGGTGATGACCCAACC
* *
14611935 ATGTGCGAGTAGGGAGTGTGCATGAGCTGGTGATGA
1 ATGTGCGAGTAGGGAGTGTGCATAAGCCGGTGATGA
14611971 TGGGTATATG
Statistics
Matches: 66, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 66 1.00
ACGTcount: A:0.26, C:0.16, G:0.36, T:0.21
Consensus pattern (43 bp):
ATGTGCGAGTAGGGAGTGTGCATAAGCCGGTGATGACCCAACC
Found at i:14622201 original size:2 final size:2
Alignment explanation
Indices: 14622194--14622228 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
14622184 TATGACATAG
14622194 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14622229 CAACAATATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:14628545 original size:30 final size:30
Alignment explanation
Indices: 14628511--14628570 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
14628501 CCATCATAGC
14628511 AAGTTTCTCGCTGCAGCGAGAAATAGTCTT
1 AAGTTTCTCGCTGCAGCGAGAAATAGTCTT
14628541 AAGTTTCTCGCTGCAGCGAGAAATAGTCTT
1 AAGTTTCTCGCTGCAGCGAGAAATAGTCTT
14628571 GGTTTGCATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (30 bp):
AAGTTTCTCGCTGCAGCGAGAAATAGTCTT
Found at i:14628824 original size:22 final size:22
Alignment explanation
Indices: 14628774--14628829 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
14628764 GAGTTTCTCG
**
14628774 CTGCAGCGAGAATCCATTTTTG
1 CTGCAGCGAGAATCCATTTTCA
* *
14628796 TTTCAGCGAGAATCCATTTTCA
1 CTGCAGCGAGAATCCATTTTCA
14628818 CTGCAGCGAGAA
1 CTGCAGCGAGAA
14628830 ATAGGGCTGG
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (22 bp):
CTGCAGCGAGAATCCATTTTCA
Found at i:14629198 original size:38 final size:38
Alignment explanation
Indices: 14629149--14629280 Score: 237
Period size: 38 Copynumber: 3.5 Consensus size: 38
14629139 CATGTGCATC
*
14629149 CCCCCCACATCATGCACAGTTAATACCATCGTTTACAT
1 CCCCCCACATCATGCACAGTTAATACCATCGTGTACAT
*
14629187 CCCCCCACATCATGCACAGTTAATACCATTGTGTACAT
1 CCCCCCACATCATGCACAGTTAATACCATCGTGTACAT
14629225 CCCCCCACATCATGCACAGTTAATACCATCGTGTACAT
1 CCCCCCACATCATGCACAGTTAATACCATCGTGTACAT
*
14629263 CCCCCCACATCGTGCACA
1 CCCCCCACATCATGCACA
14629281 CAGGCAATAT
Statistics
Matches: 90, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
38 90 1.00
ACGTcount: A:0.28, C:0.39, G:0.10, T:0.23
Consensus pattern (38 bp):
CCCCCCACATCATGCACAGTTAATACCATCGTGTACAT
Found at i:14631959 original size:26 final size:26
Alignment explanation
Indices: 14631903--14631961 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
14631893 GGCCGGCCAT
* *
14631903 AAGGAAAGAACAAGAGAGAAAATAGA
1 AAGGAAAGAACAAAAGAGAAAATACA
* *
14631929 GAGGAAAGGAAGAAAAGAGAAAA-ACA
1 AAGGAAA-GAACAAAAGAGAAAATACA
14631955 AAGGAAA
1 AAGGAAA
14631962 ACTAGAAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
26 14 0.52
27 13 0.48
ACGTcount: A:0.66, C:0.03, G:0.29, T:0.02
Consensus pattern (26 bp):
AAGGAAAGAACAAAAGAGAAAATACA
Found at i:14637862 original size:19 final size:19
Alignment explanation
Indices: 14637838--14637884 Score: 51
Period size: 21 Copynumber: 2.4 Consensus size: 19
14637828 TCTCAAACCT
*
14637838 GAGAATTTCTCGCTGCAGC
1 GAGAATTTCTAGCTGCAGC
*
14637857 GAGAATGATTCTAGCTGTAGC
1 GAGAAT--TTCTAGCTGCAGC
14637878 GA-AATTT
1 GAGAATTT
14637885 AGGGCACCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
18 2 0.08
19 6 0.25
20 3 0.12
21 13 0.54
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (19 bp):
GAGAATTTCTAGCTGCAGC
Found at i:14638107 original size:23 final size:23
Alignment explanation
Indices: 14638077--14638136 Score: 84
Period size: 23 Copynumber: 2.6 Consensus size: 23
14638067 TATACGTATA
* * *
14638077 CCCATCATTATCATGCACATCAT
1 CCCATCATCATCATACACACCAT
14638100 CCCATCATCATCATACACACCAT
1 CCCATCATCATCATACACACCAT
*
14638123 CACATCATCATCAT
1 CCCATCATCATCAT
14638137 CACCAGCTCA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.33, C:0.38, G:0.02, T:0.27
Consensus pattern (23 bp):
CCCATCATCATCATACACACCAT
Found at i:14638220 original size:43 final size:44
Alignment explanation
Indices: 14638133--14638264 Score: 121
Period size: 43 Copynumber: 3.1 Consensus size: 44
14638123 CACATCATCA
* * *
14638133 TCATCACC-AGCTCATGCACACTCCCTACTCGCACAT-GGCTGGG
1 TCATCACCGAG-TTATGCGCACTCCCTACTCGCACATAAGCTGGG
* *
14638176 TCATCACCGAGTTATGCGCACTCCTTACTCGCACATAATC-GGG
1 TCATCACCGAGTTATGCGCACTCCCTACTCGCACATAAGCTGGG
* * * * *
14638219 TCATC-CTCGACTTACGTGCACTCCCTACTCGTACAT-AGCTGAG
1 TCATCAC-CGAGTTATGCGCACTCCCTACTCGCACATAAGCTGGG
14638262 TCA
1 TCA
14638265 ATATAATTAC
Statistics
Matches: 73, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
42 3 0.04
43 67 0.92
44 3 0.04
ACGTcount: A:0.22, C:0.36, G:0.17, T:0.25
Consensus pattern (44 bp):
TCATCACCGAGTTATGCGCACTCCCTACTCGCACATAAGCTGGG
Found at i:14641850 original size:75 final size:76
Alignment explanation
Indices: 14641761--14641942 Score: 206
Period size: 78 Copynumber: 2.4 Consensus size: 76
14641751 TATAACCGTG
* * ** * *
14641761 CATGTGCGGTGTGGGAGTGCACATGATGGTGCCAGTA-G-TGTTTGGTTTGGGAGAGCACACCCC
1 CATGTGCGGTGTGGGAGTGCACATGATGATGACA-TATGCTGTGCGGTGTGGGAGAGCACACCAC
14641824 GATGATATATGC
65 GATGATATATGC
* * **
14641836 CATGTGCGGTGTGGGAGAGCACATGATGATGATATATGCCATGTGCGGTGTGGGAGAGCACATGA
1 CATGTGCGGTGTGGGAGTGCACATGATGATGACATATG-C-TGTGCGGTGTGGGAGAGCACACCA
* *
14641901 TGATGATATTTGC
64 CGATGATATATGC
*
14641914 TATGTGCGGTGTGGGAGTGCACATGATGA
1 CATGTGCGGTGTGGGAGTGCACATGATGA
14641943 GGATATTAGC
Statistics
Matches: 89, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
74 2 0.02
75 31 0.35
78 56 0.63
ACGTcount: A:0.22, C:0.14, G:0.37, T:0.27
Consensus pattern (76 bp):
CATGTGCGGTGTGGGAGTGCACATGATGATGACATATGCTGTGCGGTGTGGGAGAGCACACCACG
ATGATATATGC
Found at i:14641851 original size:39 final size:39
Alignment explanation
Indices: 14641824--14641978 Score: 215
Period size: 39 Copynumber: 4.0 Consensus size: 39
14641814 AGCACACCCC
14641824 GATGATATATGCCATGTGCGGTGTGGGAGAGCACATGAT
1 GATGATATATGCCATGTGCGGTGTGGGAGAGCACATGAT
14641863 GATGATATATGCCATGTGCGGTGTGGGAGAGCACATGAT
1 GATGATATATGCCATGTGCGGTGTGGGAGAGCACATGAT
* * *
14641902 GATGATATTTGCTATGTGCGGTGTGGGAGTGCACATGAT
1 GATGATATATGCCATGTGCGGTGTGGGAGAGCACATGAT
* * * *
14641941 GAGGATAT-TAGCTATGTGCAGTGCGGGAGTA-CACATGA
1 GATGATATAT-GCCATGTGCGGTGTGGGAG-AGCACATGA
14641979 GTTGAGTTAA
Statistics
Matches: 107, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
38 1 0.01
39 106 0.99
ACGTcount: A:0.25, C:0.12, G:0.35, T:0.27
Consensus pattern (39 bp):
GATGATATATGCCATGTGCGGTGTGGGAGAGCACATGAT
Found at i:14649106 original size:38 final size:39
Alignment explanation
Indices: 14649063--14649168 Score: 142
Period size: 38 Copynumber: 2.7 Consensus size: 39
14649053 ATAGTGCCCG
* * *
14649063 TGTGCACGATGTGGGGGGATGTACATGATGGCACTGAC-
1 TGTGCACGATGTGGGGGGATGCACATGATGACACCGACA
* * *
14649101 TGTGCACGATGTGGGGGGATGCACACGATGACTCCGGCTA
1 TGTGCACGATGTGGGGGGATGCACATGATGACACCGAC-A
14649141 TGTGCACGATGTGGGGGGATGCACATGA
1 TGTGCACGATGTGGGGGGATGCACATGA
14649169 GCTAGGTGAG
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
38 32 0.54
40 27 0.46
ACGTcount: A:0.21, C:0.18, G:0.40, T:0.22
Consensus pattern (39 bp):
TGTGCACGATGTGGGGGGATGCACATGATGACACCGACA
Found at i:14653178 original size:16 final size:16
Alignment explanation
Indices: 14653157--14653188 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
14653147 TCTCTTCTTT
*
14653157 TCTTACTTTTTTATTC
1 TCTTACCTTTTTATTC
14653173 TCTTACCTTTTTATTC
1 TCTTACCTTTTTATTC
14653189 ACCCAACCCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.12, C:0.22, G:0.00, T:0.66
Consensus pattern (16 bp):
TCTTACCTTTTTATTC
Found at i:14654475 original size:39 final size:39
Alignment explanation
Indices: 14654430--14654598 Score: 180
Period size: 39 Copynumber: 4.3 Consensus size: 39
14654420 GTGCGATGTT
** **
14654430 GGAGAGCACATGCCGATGATATATGCTTTGTCCGGTGTG
1 GGAGAGCACATGATGATGATATATGCCATGTCCGGTGTG
*
14654469 GGAGAGCACATGATGATGATAAATGCCATGTGCC-GTGTG
1 GGAGAGCACATGATGATGATATATGCCATGT-CCGGTGTG
* *
14654508 GGAGAGCACATGATGATGATATTTGCCATGTGCGGTGTG
1 GGAGAGCACATGATGATGATATATGCCATGTCCGGTGTG
** * * * *
14654547 AAAGTGCACATGATGAGGATAT-TAGCTATGTGCGGTGTG
1 GGAGAGCACATGATGATGATATAT-GCCATGTCCGGTGTG
*
14654586 GGAGTGCACATGA
1 GGAGAGCACATGA
14654599 GCTGAGTTGA
Statistics
Matches: 112, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
38 2 0.02
39 108 0.96
40 2 0.02
ACGTcount: A:0.25, C:0.14, G:0.34, T:0.26
Consensus pattern (39 bp):
GGAGAGCACATGATGATGATATATGCCATGTCCGGTGTG
Found at i:14669489 original size:20 final size:19
Alignment explanation
Indices: 14669461--14669499 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
14669451 ACCTAGCTTG
*
14669461 TTTCCTTGATTTCTTCACTT
1 TTTCCTTGAATT-TTCACTT
*
14669481 TTTCTTTGAATTTTCACTT
1 TTTCCTTGAATTTTCACTT
14669500 AGGTTTTCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.13, C:0.21, G:0.05, T:0.62
Consensus pattern (19 bp):
TTTCCTTGAATTTTCACTT
Found at i:14669878 original size:20 final size:20
Alignment explanation
Indices: 14669861--14669898 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
14669851 CCTCAAATCT
14669861 TACTCCAATAAGTCAAATTA
1 TACTCCAATAAGTCAAATTA
14669881 TACTCCAATAAGTCAAAT
1 TACTCCAATAAGTCAAAT
14669899 GGGGCCAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.45, C:0.21, G:0.05, T:0.29
Consensus pattern (20 bp):
TACTCCAATAAGTCAAATTA
Found at i:14674350 original size:77 final size:76
Alignment explanation
Indices: 14674166--14674342 Score: 241
Period size: 77 Copynumber: 2.3 Consensus size: 76
14674156 AATGTCATCT
** * *
14674166 ATTTTAATTTTGGGTGATTCATAAAGAATAGGAAATTGTTTCTTACTTTAAAAGCAATTCCTAAA
1 ATTTTAA-TTTGGGAAATTCATAAAGAATAGGAAATTGTTTCCTACTTAAAAAGCAATTCCTAAA
14674231 ATTAAGGATAGA
65 ATTAAGGATAGA
*
14674243 ATTTTAATTT-TGAATGATTCATAAAGAATAGGAAATTGTTTCCTACTTCAAAAAG-AGATTCCT
1 ATTTTAATTTGGGAA--ATTCATAAAGAATAGGAAATTGTTTCCTACTT-AAAAAGCA-ATTCCT
*
14674306 AAAATTAAGGATAGC
62 AAAATTAAGGATAGA
14674321 ATTTTAATTTGGGAAATTCATA
1 ATTTTAATTTGGGAAATTCATA
14674343 GGAAATAGTT
Statistics
Matches: 88, Mismatches: 7, Indels: 10
0.84 0.07 0.10
Matches are distributed among these distances:
75 1 0.01
76 3 0.03
77 46 0.52
78 35 0.40
79 3 0.03
ACGTcount: A:0.40, C:0.08, G:0.15, T:0.37
Consensus pattern (76 bp):
ATTTTAATTTGGGAAATTCATAAAGAATAGGAAATTGTTTCCTACTTAAAAAGCAATTCCTAAAA
TTAAGGATAGA
Found at i:14674905 original size:19 final size:19
Alignment explanation
Indices: 14674881--14674921 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
14674871 TATCTCTTTC
*
14674881 TTCCAGTAGCTTCTTGAAT
1 TTCCAGCAGCTTCTTGAAT
14674900 TTCCAGCAGCTTCTTGAAT
1 TTCCAGCAGCTTCTTGAAT
14674919 TTC
1 TTC
14674922 TTCTCTTCCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (19 bp):
TTCCAGCAGCTTCTTGAAT
Found at i:14675788 original size:70 final size:70
Alignment explanation
Indices: 14675714--14675882 Score: 284
Period size: 70 Copynumber: 2.4 Consensus size: 70
14675704 TGTAATCATG
*
14675714 TGTGTGCATGATGTGGGGGATGTACATGCCGATGATGATGGTGGCGTGAGAGATGGATGATGATA
1 TGTGTGCACGATGTGGGGGATGTACATGCCGATGATGATGGTGGCGTGAGAGATGGATGATGATA
*
14675779 GTGTC
66 GTGCC
* *
14675784 TGTGTGCACGATGTGGGGGATGCACATGCCGGTGATGATGGTGGCGTGAGAGATGGATGATGATA
1 TGTGTGCACGATGTGGGGGATGTACATGCCGATGATGATGGTGGCGTGAGAGATGGATGATGATA
14675849 GTGCC
66 GTGCC
*
14675854 CGTGTGCACGATGTGGGGGGATGTACATG
1 TGTGTGCACGATGT-GGGGGATGTACATG
14675883 ATGGCACTGA
Statistics
Matches: 92, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
70 79 0.86
71 13 0.14
ACGTcount: A:0.20, C:0.11, G:0.43, T:0.26
Consensus pattern (70 bp):
TGTGTGCACGATGTGGGGGATGTACATGCCGATGATGATGGTGGCGTGAGAGATGGATGATGATA
GTGCC
Found at i:14675899 original size:38 final size:39
Alignment explanation
Indices: 14675854--14675961 Score: 146
Period size: 38 Copynumber: 2.8 Consensus size: 39
14675844 TGATAGTGCC
*
14675854 CGTGTGCACGATGTGGGGGGATGTACATGATGGCACTGA
1 CGTGTGCACGATGTGGGGGGATGTACATGATGGCACTAA
** * * *
14675893 C-TGTGCACGATGTAAGGGGATGGACACGATGGCGCTAA
1 CGTGTGCACGATGTGGGGGGATGTACATGATGGCACTAA
14675931 CTGTGTGCACGATGTGGGGGGATGTACATGA
1 C-GTGTGCACGATGTGGGGGGATGTACATGA
14675962 GCTGGGTGTG
Statistics
Matches: 57, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
38 32 0.56
39 1 0.02
40 24 0.42
ACGTcount: A:0.22, C:0.16, G:0.40, T:0.22
Consensus pattern (39 bp):
CGTGTGCACGATGTGGGGGGATGTACATGATGGCACTAA
Done.