Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39371879
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2227820 characters in sequence are not A, C, G, or T
File 40 of 103
Found at i:15025283 original size:22 final size:22
Alignment explanation
Indices: 15025238--15025283 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
15025228 ATTTTCGTTC
*
15025238 CAGCGAAAATGCATTCTCCCTG
1 CAGCGAAAATGCATTCTCCATG
* *
15025260 CAGCTAAAATGCATTCTCGATG
1 CAGCGAAAATGCATTCTCCATG
15025282 CA
1 CA
15025284 ACGAGAAACT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.24
Consensus pattern (22 bp):
CAGCGAAAATGCATTCTCCATG
Found at i:15025468 original size:21 final size:21
Alignment explanation
Indices: 15025444--15025505 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
15025434 AAATTGCATT
15025444 GTTTTTAAACAAGTACATCAG
1 GTTTTTAAACAAGTACATCAG
* *
15025465 GTTTTTGAA-AAG--CTTC-G
1 GTTTTTAAACAAGTACATCAG
15025482 TGTTTTTAAACAAGTACATCAG
1 -GTTTTTAAACAAGTACATCAG
15025504 GT
1 GT
15025506 ACTTGCAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 10
0.70 0.09 0.22
Matches are distributed among these distances:
17 1 0.03
18 11 0.34
19 3 0.09
20 3 0.09
21 13 0.41
22 1 0.03
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (21 bp):
GTTTTTAAACAAGTACATCAG
Found at i:15026281 original size:170 final size:170
Alignment explanation
Indices: 15025715--15027599 Score: 1629
Period size: 170 Copynumber: 11.1 Consensus size: 170
15025705 GCTGTGACAC
* ** * * * *
15025715 AAAACCATTTAAAACGAGTAACAAGGCATTT-GAAGGCATGAGTGACTATAAATAGACTTCTCTT
1 AAAACCACTTAAAGTGAGTAACAAGGC-TTTCAAAGGCATGAGTGACTACAAATGGACTTTTCTT
* * * * * *
15025779 CTCATTGGATTGCTTTCACTTCACGATTCCCGATGCAAACAACAAATTATGATTTGTTTTAATCA
65 CTCATTGGATGGCTTTCACTTCACGTTTCTCGATGCAAACAACTAGTTATGATCTGTTTTAA-CA
* * *
15025844 AAAATGAAA-AAAATTTAA-TTGAAAACCATTTATAAAGTTGT
129 AAAATGAAAGAAAATTCAACTT-AAAATCATTTATAAAGTTAT
* **
15025885 AAAACCACTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAACGA-TCACAAATGGACTTTTCTT
1 AAAACCACTTAAAGTGAGTAACAAGGCTTTCAAAGGCATGAGTGACT-ACAAATGGACTTTTCTT
* * ** * * * * * * *
15025949 GC-CAATGGATAGCTTTTGCTTCATGTTTCCCAATTC-AACAACTAGTTTTGAGCTGTTTTTTAT
65 -CTCATTGGATGGCTTTCACTTCACGTTTCTCGATGCAAACAACTAGTTATGATCTG--TTTTAA
*
15026012 CAAAAATGAAAGAAAATTCAACTTAAAATCATTTATAAAGTTAC
127 CAAAAATGAAAGAAAATTCAACTTAAAATCATTTATAAAGTTAT
* * * * *
15026056 AAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGACATGAATGACTATAAATGGACTTTTCTTC
1 AAAACCACTTAAAGTGAGTAACAAGGCTTTCAAAGGCATGAGTGACTACAAATGGACTTTTCTTC
* * * * * * *
15026121 TCATTGGATGGGTTTCACTTCACATTTCTCGGTGCAAACAACAAATTATGAGCTGTTTTAACCAA
66 TCATTGGATGGCTTTCACTTCACGTTTCTCGATGCAAACAACTAGTTATGATCTGTTTTAACAAA
* * * *
15026186 AATGAAAAAAAAATTCAA-TCT-AAACCATTTGTAAAGTTGT
131 AATG-AAAGAAAATTCAACT-TAAAATCATTTATAAAGTTAT
* * *
15026226 AAAACTACTTAAAGTGAGTAACAAGGCTTTCAAATGCATGAGTGACTACAAATGGACTTTTCTTA
1 AAAACCACTTAAAGTGAGTAACAAGGCTTTCAAAGGCATGAGTGACTACAAATGGACTTTTCTTC
* * * * * * *
15026291 TCAATGGATGGCTTTCTCTTCATGTTTCTCGATTCAAACAACTAGTTGTTATCTGTTTTTACAAA
66 TCATTGGATGGCTTTCACTTCACGTTTCTCGATGCAAACAACTAGTTATGATCTG-TTTTA-ACA
* *
15026356 AAAATGAAAGAAAATTCAACTTAAAATCATTTATAAAATGAT
129 AAAATGAAAGAAAATTCAACTTAAAATCATTTATAAAGTTAT
* * * * * *
15026398 AAAACCACTTAAACTGGGTAACAAGGCTTTTAAAGGTATGAATGA-TGACAAATGCACTTTTCTT
1 AAAACCACTTAAAGTGAGTAACAAGGCTTTCAAAGGCATGAGTGACT-ACAAATGGACTTTTCTT
* * *
15026462 CTCATTGGATGGCTTTCACTTCACGTCTC-CTGAT-CAAACAACTAGTTATGATTTGTTTTTATC
65 CTCATTGGATGGCTTTCACTTCACGTTTCTC-GATGCAAACAACTAGTTATGATCTG-TTTTAAC
* *
15026525 AAAAATGAAAGAAAATTCAACTTAAAATCATTTATAAAGGTAC
128 AAAAATGAAAGAAAATTCAACTTAAAATCATTTATAAAGTTAT
* ** * * *
15026568 AAAACCATTTAAAGCAAGTAACAAGGCTTT-AAAGGCATGAATGACTATAAATAGACTTTTCTTC
1 AAAACCACTTAAAGTGAGTAACAAGGCTTTCAAAGGCATGAGTGACTACAAATGGACTTTTCTTC
* * * ** * * *
15026632 TCATTGGATGGCTTTCGCTTCATGGTTCAAGATGCAAACAACAAATTATGATATGTTTTAACCAA
66 TCATTGGATGGCTTTCACTTCACGTTTCTCGATGCAAACAACTAGTTATGATCTGTTTTAA-CAA
* * * * *
15026697 AACTGAAA-AAAATTCAATTTAAAACCAATTATAAAGTTGT
130 AAATGAAAGAAAATTCAACTTAAAATCATTTATAAAGTTAT
* * * *
15026737 AAAACCACTTAAAGTGAGTAATAAGGCTTTCAAAGCCATGAAGTGAGTACAAATGAACTTTTCTT
1 AAAACCACTTAAAGTGAGTAACAAGGCTTTCAAAGGCATG-AGTGACTACAAATGGACTTTTCTT
* * * * *
15026802 GTCAATGGATGGCTTTCACTTCATGTTTC-CTGATTCAAACAACTAGTTATGATATCT-TTTTAT
65 CTCATTGGATGGCTTTCACTTCACGTTTCTC-GATGCAAACAACTAGTTATG--ATCTGTTTTAA
* *
15026865 CAAAAATGAAATAAAATTCAACTTAAAATTATTTATAAAGTTAT
127 CAAAAATGAAAGAAAATTCAACTTAAAATCATTTATAAAGTTAT
* * * *
15026909 AAAACCACTTAAAGT-AGGTAACAGGGTTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTT
1 AAAACCACTTAAAGTGA-GTAACAAGGCTTTCAAAGGCATGAGTGACTACAAATGGACTTTTCTT
* * * * * * * *
15026973 CTCATTGGACGG-TTATCGCTTCACGTCTCTTGGTGTAGACAAAAC-A-TTATGATTTGTTTTAA
65 CTCATTGGATGGCTT-TCACTTCACGTTTCTCGATGCA-A-ACAACTAGTTATGATCTGTTTTAA
* * *
15027035 CCAAAAATGAAACAATATTCAATTTAAAATCATTTATAAAGTTAT
127 -CAAAAATGAAAGAAAATTCAACTTAAAATCATTTATAAAGTTAT
* * * * * * * ** * *
15027080 AAAACCACTTAAAGTGACTAGCAAGGCTTTCGAAGGTATGAGTGGCCACAACTATACTTTACTTA
1 AAAACCACTTAAAGTGAGTAACAAGGCTTTCAAAGGCATGAGTGACTACAAATGGACTTTTCTTC
* * ** * * * *
15027145 TCAATAGATGG-TTTTGCTTCACGTTT-TCCTATTCAAACAACTAGTTATGATTTGTTTTGATCA
66 TCATTGGATGGCTTTCACTTCACGTTTCT-CGATGCAAACAACTAGTTATGATCTGTTTT-AACA
*
15027208 AAAATGAAGGAAAATTCAACTTAAAATCATTTATAAAGTTAT
129 AAAATGAAAGAAAATTCAACTTAAAATCATTTATAAAGTTAT
* * * * *
15027250 AAAACAACTTAAAGTGAGTAACAAGGCTTTCAAAGG-ATGACTGACTATAAATGAACTTTTCTTG
1 AAAACCACTTAAAGTGAGTAACAAGGCTTTCAAAGGCATGAGTGACTACAAATGGACTTTTCTTC
* * * ** * * * * *
15027314 TCAATGCACGATTTTTC-CCT-ACGTTTCAT-GGTACAAACAA-TAAATTACGATCTGTTTTAAC
66 TCATTGGATG-GCTTTCACTTCACGTTTC-TCGATGCAAACAACT-AGTTATGATCTGTTTTAA-
* *
15027375 CAAAAATGAAACAAAATTCAAGTTAAAATCATTTAT-AAGATTAT
127 CAAAAATGAAAGAAAATTCAACTTAAAATCATTTATAAAG-TTAT
** * ** * ** * *
15027419 AAGGCCATTTAAAACGAGTAACTAGGCTTTTGAAGGCATGAAG-GACTATAAAT-GATTATTTCT
1 AAAACCACTTAAAGTGAGTAACAAGGCTTTCAAAGGCATG-AGTGACTACAAATGGACT-TTTCT
* * * * * * ** * * *
15027482 TCTTAATGGATGACTTTCGCTTCATGTTTCTCAATGCAAATGAC-AGATTATAATCTATTTAAAC
64 TCTCATTGGATGGCTTTCACTTCACGTTTCTCGATGCAAACAACTAG-TTATGATCTGTTTTAAC
* * * *
15027546 TAAAAAT-ATAA-AAAAATCAATTTAAAATCATTTATAAAGTAAC
128 -AAAAATGA-AAGAAAATTCAACTTAAAATCATTTATAAAGTTAT
15027589 AAAACCACTTA
1 AAAACCACTTA
15027600 TGTCAAGCCC
Statistics
Matches: 1385, Mismatches: 272, Indels: 116
0.78 0.15 0.07
Matches are distributed among these distances:
168 9 0.01
169 259 0.19
170 489 0.35
171 431 0.31
172 190 0.14
173 7 0.01
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (170 bp):
AAAACCACTTAAAGTGAGTAACAAGGCTTTCAAAGGCATGAGTGACTACAAATGGACTTTTCTTC
TCATTGGATGGCTTTCACTTCACGTTTCTCGATGCAAACAACTAGTTATGATCTGTTTTAACAAA
AATGAAAGAAAATTCAACTTAAAATCATTTATAAAGTTAT
Found at i:15026502 original size:341 final size:339
Alignment explanation
Indices: 15025715--15027412 Score: 1627
Period size: 341 Copynumber: 5.0 Consensus size: 339
15025705 GCTGTGACAC
* ** * * * *
15025715 AAAACCATTTAAAACGAGTAACAAGGCATTT-GAAGGCATGAGTGACT-ATAAAT-AGACTTCTC
1 AAAACCACTTAAAGTGAGTAACAAGGC-TTTCAAAGGCATGAATGA-TGACAAATGA-ACTTTTC
* * * *
15025777 TTCTCATTGGATTGCTTTCACTTCACGATTCCCGATGCAAACAACAAATTATGATTTGTTTTAAT
63 TTCTCATTGGATGGCTTTCACTTCACG-TTCCTGAT-CAAACAACTAGTTATGATTTGTTTT-AT
* * *
15025842 CAAAAATG-AAAAAAATTTAA-TTGAAAACCATTTATAAAGTTGTAAAACCACTTAAAGTGAGTA
125 CAAAAATGAAAAAAAATTCAACTT-AAAATCATTTATAAAGTTATAAAACCACTTAAAGTGAGTA
* * * * *
15025905 ACAAGGCTTTCGAAGGCATGAACGA-TCACAAATGGACTTTTCTTGC-CAATGGATAGCTTTTGC
189 ACAAGGCTTTCAAAGGCATGAATGACT-ATAAATGGACTTTTCTT-CTCAATGGATGGCTTTCGC
* * * * * *
15025968 TTCATGTTTCCCAATTC-AACAACTAGTTTTGAGCTGTTTTTTATCAAAAATGAAAGAAAATTCA
252 TTCATGTTTCTCGATTCAAACAACTAGTTATGATCTG-TTTTAACCAAAAATGAAAGAAAATTCA
* *
15026032 ACTTAAAATCATTTATAAAGTTAC
316 ACTTAAAATCATTTATAAAGTGAT
* * * * *
15026056 AAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGACATGAATGACT-ATAAATGGACTTTTCTT
1 AAAACCACTTAAAGTGAGTAACAAGGCTTTCAAAGGCATGAATGA-TGACAAATGAACTTTTCTT
* * * * * * ** * *
15026120 CTCATTGGATGGGTTTCACTTCACATTTCTCGGTGCAAACAACAAATTATGAGCTGTTTTAACCA
65 CTCATTGGATGGCTTTCACTTCACGTTCCT-GAT-CAAACAACTAGTTATGATTTGTTTTATCAA
* * * *
15026185 AAATGAAAAAAAAATTCAA-TCT-AAACCATTTGTAAAGTTGTAAAACTACTTAAAGTGAGTAAC
128 AAATG-AAAAAAAATTCAACT-TAAAATCATTTATAAAGTTATAAAACCACTTAAAGTGAGTAAC
* * * * *
15026248 AAGGCTTTCAAATGCATGAGTGACTACAAATGGACTTTTCTTATCAATGGATGGCTTTCTCTTCA
191 AAGGCTTTCAAAGGCATGAATGACTATAAATGGACTTTTCTTCTCAATGGATGGCTTTCGCTTCA
* * * *
15026313 TGTTTCTCGATTCAAACAACTAGTTGTTATCTGTTTTTACAAAAAAATGAAAGAAAATTCAACTT
256 TGTTTCTCGATTCAAACAACTAGTTATGATCTGTTTTAAC-CAAAAATGAAAGAAAATTCAACTT
*
15026378 AAAATCATTTATAAAATGAT
320 AAAATCATTTATAAAGTGAT
* * * * *
15026398 AAAACCACTTAAACTGGGTAACAAGGCTTTTAAAGGTATGAATGATGACAAATGCACTTTTCTTC
1 AAAACCACTTAAAGTGAGTAACAAGGCTTTCAAAGGCATGAATGATGACAAATGAACTTTTCTTC
15026463 TCATTGGATGGCTTTCACTTCACGTCTCCTGATCAAACAACTAGTTATGATTTGTTTTTATCAAA
66 TCATTGGATGGCTTTCACTTCACGT-TCCTGATCAAACAACTAGTTATGATTTG-TTTTATCAAA
* * * * **
15026528 AATGAAAGAAAATTCAACTTAAAATCATTTATAAAGGTACAAAACCATTTAAAGCAAGTAACAAG
129 AATGAAAAAAAATTCAACTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGTGAGTAACAAG
* * *
15026593 GCTTT-AAAGGCATGAATGACTATAAATAGACTTTTCTTCTCATTGGATGGCTTTCGCTTCATGG
194 GCTTTCAAAGGCATGAATGACTATAAATGGACTTTTCTTCTCAATGGATGGCTTTCGCTTCATGT
** * * * * * *
15026657 TTCAAGATGCAAACAACAAATTATGATATGTTTTAACCAAAACTGAAA-AAAATTCAATTTAAAA
259 TTCTCGATTCAAACAACTAGTTATGATCTGTTTTAACCAAAAATGAAAGAAAATTCAACTTAAAA
* *
15026721 CCAATTATAAAGTTG-T
324 TCATTTATAAAG-TGAT
* *
15026737 AAAACCACTTAAAGTGAGTAATAAGGCTTTCAAAGCCATGAAGTGA-GTACAAATGAACTTTTCT
1 AAAACCACTTAAAGTGAGTAACAAGGCTTTCAAAGGCATGAA-TGATG-ACAAATGAACTTTTCT
* * *
15026801 TGTCAATGGATGGCTTTCACTTCATGTTTCCTGATTCAAACAACTAGTTATGATATCT-TTTTAT
64 TCTCATTGGATGGCTTTCACTTCACG-TTCCTGA-TCAAACAACTAGTTATGAT-T-TGTTTTAT
* *
15026865 CAAAAATGAAATAAAATTCAACTTAAAATTATTTATAAAGTTATAAAACCACTTAAAGT-AGGTA
125 CAAAAATGAAAAAAAATTCAACTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGTGA-GTA
* * * * * *
15026929 ACAGGGTTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTCTCATTGGACGG-TTATCGCT
189 ACAAGGCTTTCAAAGGCATGAATGACTATAAATGGACTTTTCTTCTCAATGGATGGCTT-TCGCT
* * * * * * * *
15026993 TCACGTCTCTTGGTGT-AGACAAAAC-A-TTATGATTTGTTTTAACCAAAAATGAAACAATATTC
253 TCATGTTTCTCGAT-TCA-A-ACAACTAGTTATGATCTGTTTTAACCAAAAATGAAAGAAAATTC
* *
15027055 AATTTAAAATCATTTATAAAGTTAT
315 AACTTAAAATCATTTATAAAGTGAT
* * * * * *** * *
15027080 AAAACCACTTAAAGTGACTAGCAAGGCTTTCGAAGGTATGAGTGGCCACAACT-ATACTTTACTT
1 AAAACCACTTAAAGTGAGTAACAAGGCTTTCAAAGGCATGAATGATGACAAATGA-ACTTTTCTT
* * * **
15027144 ATCAATAGATGG-TTTTGCTTCACGTTTTCCT-ATTCAAACAACTAGTTATGATTTGTTTTGATC
65 CTCATTGGATGGCTTTCACTTCACG--TTCCTGA-TCAAACAACTAGTTATGATTTGTTTT-ATC
** *
15027207 AAAAATGAAGGAAAATTCAACTTAAAATCATTTATAAAGTTATAAAACAACTTAAAGTGAGTAAC
126 AAAAATGAAAAAAAATTCAACTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGTGAGTAAC
* * * * * ** *
15027272 AAGGCTTTCAAAGG-ATGACTGACTATAAATGAACTTTTCTTGTCAATGCACGATTTTTC-CCT-
191 AAGGCTTTCAAAGGCATGAATGACTATAAATGGACTTTTCTTCTCAATGGATG-GCTTTCGCTTC
* * * * * * *
15027334 ACGTTTCAT-GGTACAAACAA-TAAATTACGATCTGTTTTAACCAAAAATGAAACAAAATTCAAG
255 ATGTTTC-TCGATTCAAACAACT-AGTTATGATCTGTTTTAACCAAAAATGAAAGAAAATTCAAC
15027397 TTAAAATCATTTATAA
318 TTAAAATCATTTATAA
15027413 GATTATAAGG
Statistics
Matches: 1152, Mismatches: 162, Indels: 88
0.82 0.12 0.06
Matches are distributed among these distances:
337 3 0.00
338 2 0.00
339 124 0.11
340 114 0.10
341 519 0.45
342 318 0.28
343 68 0.06
344 4 0.00
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (339 bp):
AAAACCACTTAAAGTGAGTAACAAGGCTTTCAAAGGCATGAATGATGACAAATGAACTTTTCTTC
TCATTGGATGGCTTTCACTTCACGTTCCTGATCAAACAACTAGTTATGATTTGTTTTATCAAAAA
TGAAAAAAAATTCAACTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGTGAGTAACAAGGC
TTTCAAAGGCATGAATGACTATAAATGGACTTTTCTTCTCAATGGATGGCTTTCGCTTCATGTTT
CTCGATTCAAACAACTAGTTATGATCTGTTTTAACCAAAAATGAAAGAAAATTCAACTTAAAATC
ATTTATAAAGTGAT
Found at i:15027393 original size:682 final size:680
Alignment explanation
Indices: 15025790--15027599 Score: 1768
Period size: 682 Copynumber: 2.7 Consensus size: 680
15025780 TCATTGGATT
* * * *
15025790 GCTTTCACTTCACGAT-TCCCGATGCAAACAACAAATTATGATTTGTTTTAATCAAAAATGAAAA
1 GCTTTCACTTCACG-TCTCCTGAT-CAAACAACTAGTTATGATTTGTTTTAATCAAAAATGAAGA
* * * *
15025854 AAATTTAA-TTGAAAACCATTTATAAAGTTGTAAAACCACTTAAAGTGAGTAACAAGGCTTTCGA
64 AAATTCAACTT-AAAATCATTTATAAAGTTATAAAACCACTTAAAGTGAGTAACAAGGCTTTCAA
* * * * * *
15025918 AGGCATGAAC-GA-TCACAAATGGACTTTTCTTGCCAATGGATAGCTTTTGCTTCATGTTTCCCA
128 AGGCATG-ACTGACT-ATAAATGAACTTTTCTTGTCAATGGAGA-CTTTTCCTTCATGTTT-CAA
* * * * * *
15025981 -ATTC-AACAACT-AGTTTTGAGCTGTTTTTTATCAAAAATGAAAGAAAATTCAACTTAAAATCA
189 GATACAAACAA-TAAATTATGATCTG-TTTTAACCAAAAATGAAA-AAAATTCAACTTAAAATCA
* * *
15026043 TTTATAAAGTTACAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGACATGAATGACTATAAA
251 TTTATAAAGTTACAAAACCACTTAAAGTGAGTAACAAGGCTTTCAAAGACATGAATGACTACAAA
* * * *
15026108 TGGACTTTTCTTCTCATTGGATGGGTTTCACTTCACATTTCTCGGTGCAAACAACAAATTATGAG
316 TGAACTTTTCTTCTCAATGGATGGCTTTCACTTCACATTTCTCGATGCAAACAACAAATTATGAG
* * * *
15026173 CTGTTTTAACCAAAATGAAAAAAAAATTCAATCTAAACCATTTGTAAAGTTGTAAAACTACTTAA
381 CTGTTTTAACAAAAATGAAAAAAAAATTCAATCTAAACCATTTATAAAGTTATAAAACCACTTAA
* *
15026238 AGTGAGTAACAAGGCTTTCAAATGCATGAGTGACTACAAATGGACTTTTCTTATCAATGGATGGC
446 AGTGAGTAACAAGGCTTTCAAAGGCATGAGTGACTACAAATGGACTTTTCTTATCAATGGACGGC
* * * * * * * *
15026303 TTTCTCTTCATGTTTCTCGATTCAAACAACTAGTTGTTATCTGTTTTTACAAAAAAATGAAAGAA
511 TTTCGCTTCACGTCTCTCGATTCAAAAAACTAGTTATGATCTGTTTTAACAAAAAAATGAAACAA
** *
15026368 AATTCAACTTAAAATCATTTATAAAATGATAAAACCACTTAAACTGGGTAACAAGGCTTTTAAAG
576 AATTCAACTTAAAATCATTTATAAAATGATAAAACCACTTAAACTGACTAACAAGGCTTTCAAAG
** * * * * *
15026433 GTATGAATGATGACAAATGCACTTTTCTTCTCATTGGATG
641 GTATGAATGACCACAAATACACTTTACTTATCAATAGATG
*
15026473 GCTTTCACTTCACGTCTCCTGATCAAACAACTAGTTATGATTTGTTTTTATCAAAAATGAAAGAA
1 GCTTTCACTTCACGTCTCCTGATCAAACAACTAGTTATGATTTGTTTTAATCAAAAATG-AAGAA
* * * **
15026538 AATTCAACTTAAAATCATTTATAAAGGTACAAAACCATTTAAAGCAAGTAACAAGGCTTT-AAAG
65 AATTCAACTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGTGAGTAACAAGGCTTTCAAAG
* * * * *
15026602 GCATGAATGACTATAAAT-AGACTTTTCTTCTCATTGGATGGC-TTTCGCTTCATGGTTCAAGAT
130 GCATGACTGACTATAAATGA-ACTTTTCTTGTCAATGGA-GACTTTTC-CTTCATGTTTCAAGAT
* * * * * * *
15026665 GCAAACAACAAATTATGATATGTTTTAACCAAAACTGAAAAAAATTCAATTTAAAACCAATTATA
192 ACAAACAATAAATTATGATCTGTTTTAACCAAAAATGAAAAAAATTCAACTTAAAATCATTTATA
** * * *
15026730 AAGTTGTAAAACCACTTAAAGTGAGTAATAAGGCTTTCAAAGCCATGAAGTGAGTACAAATGAAC
257 AAGTTACAAAACCACTTAAAGTGAGTAACAAGGCTTTCAAAGACATGAA-TGACTACAAATGAAC
* ** * * * *
15026795 TTTTCTTGTCAATGGATGGCTTTCACTTCATGTTTC-CTGATTCAAACAACTAGTTATGATATCT
321 TTTTCTTCTCAATGGATGGCTTTCACTTCACATTTCTC-GATGCAAACAACAAATTATG--AGCT
* * **
15026859 -TTTTATCAAAAATG-AAATAAAATTCAA-CTTAAAATTATTTATAAAGTTATAAAACCACTTAA
383 GTTTTAACAAAAATGAAAAAAAAATTCAATC-T-AAACCATTTATAAAGTTATAAAACCACTTAA
* * * * * *
15026921 AGT-AGGTAACAGGGTTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTCTCATTGGACGG
446 AGTGA-GTAACAAGGCTTTCAAAGGCATGAGTGACTACAAATGGACTTTTCTTATCAATGGACGG
* * * *
15026985 -TTATCGCTTCACGTCTCTTGGTGT-AGACAAAAC-A-TTATGATTTGTTTTAAC-CAAAAATGA
510 CTT-TCGCTTCACGTCTCTCGAT-TCA-A-AAAACTAGTTATGATCTGTTTTAACAAAAAAATGA
* * * * * *
15027045 AACAATATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGTGACTAGCAAGGCTTT
571 AACAAAATTCAACTTAAAATCATTTATAAAATGATAAAACCACTTAAACTGACTAACAAGGCTTT
* * * * *
15027110 CGAAGGTATGAGTGGCCACAACTATACTTTACTTATCAATAGATG
636 CAAAGGTATGAATGACCACAAATACACTTTACTTATCAATAGATG
** * *
15027155 G-TTTTGCTTCACGTTTTCCT-ATTCAAACAACTAGTTATGATTTGTTTTGATCAAAAATGAAGG
1 GCTTTCACTTCACG-TCTCCTGA-TCAAACAACTAGTTATGATTTGTTTTAATCAAAAATGAA-G
*
15027218 AAAATTCAACTTAAAATCATTTATAAAGTTATAAAACAACTTAAAGTGAGTAACAAGGCTTTCAA
63 AAAATTCAACTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGTGAGTAACAAGGCTTTCAA
* * * * * *
15027283 AGG-ATGACTGACTATAAATGAACTTTTCTTGTCAATGCACGATTTTTCCCT-ACGTTTCATGGT
128 AGGCATGACTGACTATAAATGAACTTTTCTTGTCAATGGA-GACTTTTCCTTCATGTTTCAAGAT
* *
15027346 ACAAACAATAAATTACGATCTGTTTTAACCAAAAATGAAACAAAATTCAAGTTAAAATCATTTAT
192 ACAAACAATAAATTATGATCTGTTTTAACCAAAAATGAAA-AAAATTCAACTTAAAATCATTTAT
* ** * ** * ** * * *
15027411 -AAGATTATAAGGCCATTTAAAACGAGTAACTAGGCTTTTGAAGGCATGAAGGACTATAAATG-A
256 AAAG-TTACAAAACCACTTAAAGTGAGTAACAAGGCTTTCAAAGACATGAATGACTACAAATGAA
* * * * ** * ** * * * *
15027474 TTATTTCTTCTTAATGGATGACTTTCGCTTCATGTTTCTCAATGCAAATGACAGATTATAATCTA
320 CT-TTTCTTCTCAATGGATGGCTTTCACTTCACATTTCTCGATGCAAACAACAAATTATGAGCTG
* * * * * *
15027539 TTTAAACTAAAAAT-ATAAAAAAA-TCAATTTAAAATCATTTATAAAGTAACAAAACCACTTA
384 TTTTAAC-AAAAATGAAAAAAAAATTCAATCT-AAACCATTTATAAAGTTATAAAACCACTTA
15027600 TGTCAAGCCC
Statistics
Matches: 921, Mismatches: 170, Indels: 75
0.79 0.15 0.06
Matches are distributed among these distances:
679 4 0.00
680 40 0.04
681 196 0.21
682 452 0.49
683 217 0.24
684 8 0.01
685 4 0.00
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (680 bp):
GCTTTCACTTCACGTCTCCTGATCAAACAACTAGTTATGATTTGTTTTAATCAAAAATGAAGAAA
ATTCAACTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGTGAGTAACAAGGCTTTCAAAGG
CATGACTGACTATAAATGAACTTTTCTTGTCAATGGAGACTTTTCCTTCATGTTTCAAGATACAA
ACAATAAATTATGATCTGTTTTAACCAAAAATGAAAAAAATTCAACTTAAAATCATTTATAAAGT
TACAAAACCACTTAAAGTGAGTAACAAGGCTTTCAAAGACATGAATGACTACAAATGAACTTTTC
TTCTCAATGGATGGCTTTCACTTCACATTTCTCGATGCAAACAACAAATTATGAGCTGTTTTAAC
AAAAATGAAAAAAAAATTCAATCTAAACCATTTATAAAGTTATAAAACCACTTAAAGTGAGTAAC
AAGGCTTTCAAAGGCATGAGTGACTACAAATGGACTTTTCTTATCAATGGACGGCTTTCGCTTCA
CGTCTCTCGATTCAAAAAACTAGTTATGATCTGTTTTAACAAAAAAATGAAACAAAATTCAACTT
AAAATCATTTATAAAATGATAAAACCACTTAAACTGACTAACAAGGCTTTCAAAGGTATGAATGA
CCACAAATACACTTTACTTATCAATAGATG
Found at i:15030236 original size:13 final size:13
Alignment explanation
Indices: 15030218--15030242 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15030208 TTCTAGAAAA
15030218 TTTATAAAATCAT
1 TTTATAAAATCAT
15030231 TTTATAAAATCA
1 TTTATAAAATCA
15030243 CAATTTCTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTATAAAATCAT
Found at i:15034043 original size:171 final size:170
Alignment explanation
Indices: 15033524--15038551 Score: 3880
Period size: 171 Copynumber: 29.2 Consensus size: 170
15033514 AAGGCATTAG
* * * * *
15033524 ATGGACTCTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCTAATGT-AAACATCCAATTATG
1 ATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAAT-TCAAACAACTAATTATG
* * * * *
15033588 ATATGTTTTAACCAAAAATGAAAAAAAAATTCAGTTTAAAATCATTTGTAAAGTTATAAAACCAC
65 ATCTGTTTTTACCAAAAATG--AAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCAT
* * * * * *
15033653 TTAAAGTGAGTAACATGACTTTCAAAGGCATTAGTCACTATAA
128 TTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTACAA
* * * * * * *
15033696 ATTGACTTCTCTTGTCAATGGATGGCTTTCGCTTGATGTTTCCCAATGCAAACATCAAATTATCA
1 ATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATTCAAACAACTAATTATGA
* * * * * *
15033761 TCTATTTTAACAAAAAACT-AAGAAATATTCAATTTTAAAGCTATTTATAAAGTTATAAAACCAT
66 TCTGTTTTTACCAAAAA-TGAA-AAAAATTCAATTTAAAATC-ATTTATAAAGTTATAAAACCAT
* ** *
15033825 TTAAAGCAAGTAACAAGGCTTTTGAAGGCATGAGTGACAACAA
128 TTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTACAA
* *
15033868 ATGGACTTTTCTTGTCAATGGATGGCTTTCACTTCATGTTTCCCAATTCAAACAACTAGTTATGA
1 ATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATTCAAACAACTAATTATGA
* * * *
15033933 TCTGTTTTTACAAAAAATGAAAGAAAATTCAACTTAAAGTCATTTATAAAGTTATAAAACTATTT
66 TCTGTTTTTACCAAAAATGAAA-AAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTT
* * *
15033998 AAAGCGAGTAACAAGGCTTTCAAAGGTATGAGTAACTATAA
130 AAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTACAA
* * * * * *
15034039 ATGGACTTTTCTTCTCATTGGATGGCTTTCGCTTCATG-TCCCCTAACGT-AGACAACAAATTAT
1 ATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCC-AA-TTCAAACAACTAATTAT
* * * * *
15034102 GATTTGTTTTAACCAAAAATGAAAAAATATTCAATTTAAAATCATTTATAAAGTTTTAAAACTAC
64 GATCTGTTTTTACCAAAAATGAAAAAA-ATTCAATTTAAAATCATTTATAAAGTTATAAAACCAT
* * **
15034167 TTAAAGCCACTAACAAGGCTTTCAAAGGCATTTGTGACTACAA
128 TTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTACAA
* * * * * * *
15034210 ATGAACTTTTCTTGTCAATGGACGGCTTTCGCTTTATATTTCCTAATTCAAACAACTAGTAATGA
1 ATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATTCAAACAACTAATTATGA
* * * * * * * * * *
15034275 TCTTTTTTTACTAAATATGAAAGAAAATTTAACTTAAAATTATTAATAAAGTTATAAAATCACTG
66 TCTGTTTTTACCAAAAATGAAA-AAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTT
** * *
15034340 AAAATGAGTAACAAGGCTTTCGAAGGCATGAGTGACAACAA
130 AAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTACAA
* * ** ** * * * *
15034381 ATGGACTTTTCTTGTCAATGAATGGGTTTTACTTCACATTTCCCAATACAAGCATCCAATTATGA
1 ATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATTCAAACAACTAATTATGA
* * * *
15034446 TATG-TTTTATCCAAAAAT------AATTCAATTCAAAATCACTTATAAAGTTATAAAACCACTT
66 TCTGTTTTTA-CCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTT
* * *
15034504 AAAGCAAGCAACAAGGCTTTCGAAGGCATGAGTGACTACAA
130 AAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTACAA
* * * * ** *
15034545 ATGGACTTTTCTTGTCAATGGATGGCTATCGCTTCATGTTTCCTAATTAAAAAAACTGGTTATGT
1 ATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATTCAAACAACTAATTATGA
* * * * *
15034610 TCTGTTTGTACCAAAAATGAAAGAAAATTCAACTAAAAATCATTTACAAAGTTATAAAATCATTT
66 TCTGTTTTTACCAAAAATGAAA-AAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTT
*** * * *
15034675 AAAGCGAGTAATCAA-AAATTCGAAGGCTTGAGTGACTATAA
130 AAAGCGAGTAA-CAAGGCTTTCAAAGGCATGAGTGACTACAA
** * * * * **** ** * *
15034716 ATGGACTTTTCTTCCCATTGGATAGCTTTCGTTTCACGTCTT-TTGGTGGAAACAACAAATTTTG
1 ATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGT-TTCCCAATTCAAACAACTAATTATG
* * * * * *
15034780 A-CATGCTTTAACCAAAAATGATAACAATTTCAATTTAAAATAATTTATAAAGTTATAAAACCGT
65 ATC-TGTTTTTACCAAAAATGA-AAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCAT
* * **
15034844 TTAAGGTGAGTAACAAGGCTTTTGAAGGCATGAGTGACTACAA
128 TTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTACAA
* * * ** *
15034887 ATGGACTTTTCTTGTCGATGGATGGCTTTTGCTTCATGTTTTCGGATTCAAACAACT-AGTA-GT
1 ATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATTCAAACAACTAATTATG-
* * *
15034950 ATTCTGTTTTTTACCAAAAGTGAAAGAAAATTCAACTTAAAATTATTTATAAAGTTATAAAACCA
65 A-TCTG-TTTTTACCAAAAATGAAA-AAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCA
* * * *
15035015 TTTAAAGCGAGTAACAAGACTTTCAAAGGCATAAGTGACTATAC
127 TTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTACAA
* * * * * * ** * *
15035059 ATGGGCTTTTCTTCTCATTAGATGGCTTTCACTTCACGTTTCCTGATGCAAACAACAAATTATGA
1 ATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATTCAAACAACTAATTATGA
* * * * * *
15035124 TCTGTTTTTAACCAAAAATGAAAAAGATTCAATTCAAAACCATTTATAAAGTTGTAAAATCATAT
66 TCTGTTTTT-ACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTT
* *
15035189 ACAA-CGAGTAACAAGGCTTTCGAAGGCATGAATGACTACAA
130 A-AAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTACAA
* * * *
15035230 ATAGACTTTTCTTGTCATTGGATGAG-TTTCGCTTCATGTATT--CAGATTCAAAGAACTAGTTA
1 ATGGACTTTTCTTGTCAATGGATG-GCTTTCGCTTCATGT-TTCCCA-ATTCAAACAACTAATTA
* * * * * ** * * *
15035292 TGATTTCTTTTGATCGAAAATGAAGGGAAATTCAACTTAAAATCATTTATGAAGTTATAAAACAA
63 TGATCTGTTTTTACCAAAAATGAA-AAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCA
* * **
15035357 CTTAAAGCAAGTAACAAGGCTTTCAAAGATATGAGTGA-TAACAA
127 TTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACT-ACAA
** * * * * *
15035401 ATGGACTTTTCTTGTCAATAAATGGGTTTTGCTTCATGTTTCCCAATACAAGCATGC-AATTATG
1 ATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATTCAAACA-ACTAATTATG
* * * * * *
15035465 ATATGTTTTAACCAAAAATGAAAAACAATTCAATTCAAAATCACTTATAAAGTTATTAAACCACT
65 ATCTGTTTTTACCAAAAATGAAAAA-AATTCAATTTAAAATCATTTATAAAGTTATAAAACCATT
*
15035530 TAAAGCGAGTAACAGGGCTTTCAAAGGCATGAGTGACTACAA
129 TAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTACAA
* * * * * *
15035572 ATGAACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATTAAAAAAATTAGTT-TAG
1 ATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATTCAAACAACTAATTAT-G
* * * ** * *
15035636 TTCTGTTTTGACCAAAAATAAAAGAAAATTCAA-TTATGATC-TGTT-TTAACTTGAGATGAAAA
65 ATCTGTTTTTACCAAAAATGAAA-AAAATTCAATTTAAAATCAT-TTATAAAGTT---AT-AAAA
* **** * * * * ** * *
15035698 ACATTTTGAATTTAAATAATTTATATGATTAT-AAACCCGAGTAAAGTGAGT--AA
124 CCA-TTT-AAAGCGAGTAA--CA-AGGCTT-TCAAAGGC-A-T-GAGTGACTACAA
* * * ** * *
15035751 CTAGG-CTTTTAAAGGTATGACTGACTATAAATGGACTTTTCTTGTCAATGCACGATTTTTCCTT
1 AT-GGACTTTT----CT-TG--T--CAATGGATGG-C-TTTC--G-C--T--TC-ATGTTTCC--
** ** ** * * * *
15035815 ACGTTTCCTAGTGCAA-TCAACAAATTATGATCTGTTTTAACCAAAAATGAAACAAAATTCAAGT
44 -CAATT-C-A-AACAACT-AA-TTATGAT-CTGT-TTTT-ACCAAAAATGAAA-AAAATTCAATT
** * * *
15035879 TAAAATCATTTAT-AAGATTATAAAACCATTTAAAGTAAGTAACTAGGCTTTCGAAGGTATGAAG
99 TAAAATCATTTATAAAG-TTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCAAAGGCATG-AG
*
15035943 -GACTATAA
162 TGACTACAA
* * * * * *** * ** *
15035951 AT-GAGCATTTCTTCTTAATGCATAGCTTTCGCTTCATGTTTCTTGATGCAAATGACAAATTATG
1 ATGGA-CTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATTCAAACAACTAATTATG
** * * * * * *
15036015 ATCTGTTTAAACCAAAAATGAATAAAAA-TAAATTTAAAATTATTTATAAAGTAACAAAATCACT
65 ATCTGTTTTTACCAAAAATGAA-AAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATT
* ** * *
15036079 TAAAGCAAGTAACAAGGCTTTTGAAGGCATTAGTGACTATAA
129 TAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTACAA
* ** * * * *
15036121 ATGGACTCTTCTTGTCAAAT-TTTGGCTTTCACTTCACGTTTCCTAATGT-AAACATCTAATTAT
1 ATGGACTTTTCTTGTC-AATGGATGGCTTTCGCTTCATGTTTCCCAAT-TCAAACAACTAATTAT
* * * * * * * *
15036184 GATATGTTTTAACCAAAAATAAAAAAAAATCATTTTAAAATCATTTGTAAAGTTATAAAGCCACT
64 GATCTGTTTTTACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATT
* * * * *
15036249 TAAAGCGAGTAA-TAGAGCTTCCGAAA-GCATCAGTCACTATAA
129 TAAAGCGAGTAACAAG-GCTTTC-AAAGGCATGAGTGACTACAA
* * * * * * * * *
15036291 ATGGACTTCTCTTGTCAACGGATGCCTTTCGCTTGATGCTTCCCAATGCAAACATCAAATTATCA
1 ATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATTCAAACAACTAATTATGA
* * * * * * * *
15036356 TCTATTTTAACAAAAAAGATGAGAAATATTCAGTTTTAAAA-CTATTTATAAAGTTATAAGATCA
66 TCTGTTTTTAC-CAAAA-ATGAAAAAAATTCA-ATTTAAAATC-ATTTATAAAGTTATAAAACCA
* *
15036420 TTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGACTACAA
127 TTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTACAA
* * * * * *
15036464 ATGGACTTTTCTTGTCAATGAATGGCTTTCGCTTCACGTTTCCCTATTCAAACAGCTAGTTTTGA
1 ATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATTCAAACAACTAATTATGA
* * * *
15036529 TATGTTTTTACCAAAAAT-AAAAGAAACTTCAACTTAAAGTCTTTTATAAAGTTATAAAACCATT
66 TCTGTTTTTACCAAAAATGAAAA-AAA-TTCAATTTAAAATCATTTATAAAGTTATAAAACCATT
* *
15036593 TAAAACGAGTAACAAGGCTTT-AGAAGGCATGAGTGACTATAA
129 TAAAGCGAGTAACAAGGCTTTCA-AAGGCATGAGTGACTACAA
* * * * * * *
15036635 ATGGACTTTTCTTCTCATTGGATGGCTTTCACTTCATGTCTCCCGATGT-AGACAACAAATTATG
1 ATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAAT-TCAAACAACTAATTATG
* * *
15036699 ATTTGTTTTAAACAAAAATGAAAAAAAATATTCAATTTAAAATCATTTATAAAGTTATAAAACCA
65 ATCTGTTTTTACCAAAAATG--AAAAAA-ATTCAATTTAAAATCATTTATAAAGTTATAAAACCA
* * * * *
15036764 CTTAAAGTGACTAACAACGCTTTCAAAGACATGAGTGACTACAA
127 TTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTACAA
* * *** ** * *
15036808 ATAGACTTTTCTTGTCAATGAACAACTTTCGCTTCATGTTTCCTTATTCAAACAACTAGTAATGA
1 ATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATTCAAACAACTAATTATGA
* ** * * * *
15036873 TATGTTTTTACCAATTATGAAAGAAAATTCAACTTAAAATCATTTATAAAGTTATAAAATCACTG
66 TCTGTTTTTACCAAAAATGAAA-AAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTT
* *
15036938 AAAGTGAGTAACAAGGCTTTCAAAGGCATGAGTG-GTAACAA
130 AAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACT-ACAA
* * * * * * * * * *
15036979 ATGGATTTTTCTTGTCAATGAATGGGTTTTTGCTTCACGTTTTCCAATACAAGCATCCAATTATG
1 ATGGACTTTTCTTGTCAATGGAT-GGCTTTCGCTTCATGTTTCCCAATTCAAACAACTAATTATG
* * * * * * * *
15037044 ATATGTTTTAACCCAAAAT-AAAAAAAATCAATTCAAAATCACTTATAAAGTTATAAAACAACTT
65 ATCTGTTTTTACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTT
*
15037108 AAAGTGAGCT-ACAAGGCTTTCAAAGGCATGAGTGACTACAA
130 AAAGCGAG-TAACAAGGCTTTCAAAGGCATGAGTGACTACAA
* * *** * * *** *
15037149 ATGGACTTTTTTTGTCAATGGATGGCTTTCGCTTCACGTTTCTTGATTCAAAAAATTGGCTATGT
1 ATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATTCAAACAACTAATTATGA
* * * * * * *
15037214 TCTGCTTTTACCAAAAAATGGTAGAAAATTCAACTAAAAATCATTTATAAAGTTTTAAAATCATT
66 TCTGTTTTTACC-AAAAAT-GAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATT
* * *** * * *
15037279 TAAAGCGAGCAATAAGAAATTCGAAGGC-TAAAGTGACTATAA
129 TAAAGCGAGTAACAAGGCTTTCAAAGGCAT-GAGTGACTACAA
* * * * **** ** * *
15037321 ACGGACTTTTCTTCTCATTGGATGGCTTTCGTTTCATGTTTCTTGGTGGAAACAACAAATTTTGA
1 ATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATTCAAACAACTAATTATGA
* * * ** * * * *
15037386 TATGCTTTAATTAAAAATGATAACAATTTCAATTTAAAATAATTTATAAAGTTATAAAACTATTT
66 TCTGTTTTTACCAAAAATGA-AAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTT
* **
15037451 AAGGCGAGTAACAAGGCTTTTGAAGGCATGAGTGACTACAA
130 AAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTACAA
* * *
15037492 ATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATTCAAACAACTAGTAATGA
1 ATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATTCAAACAACTAATTATGA
* *
15037557 TCTGTTTTTACCAAAAGTGAAATAAAATTCAACTTAAAATCATTTATAAAGTTATAAAACCATTT
66 TCTGTTTTTACCAAAAATGAAA-AAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTT
* *
15037622 AAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAC
130 AAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTACAA
* * * * * *
15037663 ATGGGCTTTTCTTCTCATTGAATGGCTTTCGCTTCATGTTTCCCTATGCAAACAA-TAAATTATG
1 ATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATTCAAACAACT-AATTATG
* * * * * *
15037727 ATATGTTTTTAACCAAAAATGAAAAAACTTCAATTTAAAACCATTTATAAAGTTGTAAAATCACT
65 ATCTGTTTTT-ACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATT
* *
15037792 TACAGTGAGTAACAAGGCTTTCAAAGGCATGAGTGACTACAA
129 TAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTACAA
* * * *
15037834 ATGAACTTTTATTGTCAATGGATGGCTTTCGCTTCATGTTT-TCATATTCAAACAACTAGTTATG
1 ATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCA-ATTCAAACAACTAATTATG
* ** * * * *
15037898 ATTTGTTTTTATAAAAAATGAATGAAAATTCAACTTAAAATTATTTATAAAGTTATAAAACTATT
65 ATCTGTTTTTACCAAAAATGAA-AAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATT
* *
15037963 TAAAGTGAGTAACAAGGCTTTCAAAGGCTTGAGTGACTACAA
129 TAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTACAA
* * * ** * * * *
15038005 ATGGACTTTTCTTCTCATTGGATGGTTTTCGCTTCACATTT-TCAGATGT-AGACAACAAAATAT
1 ATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCA-AT-TCAAACAACTAATTAT
* * *
15038068 GATAT-TTTTTAACCAAAAATGAAAAAAATTCAATTCAAAATCATTTATAAAGTGATAAAACCAC
64 GATCTGTTTTT-ACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCA-
* * * * *
15038132 TTCAAA-CGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAT
127 TTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTACAA
* * * * * * * *
15038175 ATGGACCTTTCTTGTCAATGGATGGGTTTTGGTTCACT-CTTCCC-ATTACAAGCATCCAATTAT
1 ATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCA-TGTTTCCCAATT-CAAACAACTAATTAT
* * * * * *
15038238 GATATGGTTTAACCAAAAACGGAAAAACAATTCAATTTAATATCATTTCTAAAGTTATAAAACCA
64 GATCTGTTTTTACCAAAAA-TGAAAAA-AATTCAATTTAAAATCATTTATAAAGTTATAAAACCA
* * *
15038303 CTTAAAGTGAGTAACAAGGCTTTCGAAA-GCATGAGTGACTATAA
127 TTTAAAGCGAGTAACAAGGCTTTC-AAAGGCATGAGTGACTACAA
* * * * * *
15038347 ATGGACATTTT-TTGTCAATGGAGGGCTTTCGCATGATGTTTCCCAATGCAAACATC-AATTATC
1 ATGGAC-TTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATTCAAACAACTAATTATG
* * * * * * *
15038410 ATATGTTTTAACCAAAAA-CAAAAAACATTCAATTTTAAAACCTTTTAT-AGGATTATAAAATCA
65 ATCTGTTTTTACCAAAAATGAAAAAA-ATTCAA-TTTAAAATCATTTATAAAG-TTATAAAACCA
* * * * * *
15038473 TTTAATGTGAGTCACTAGGCTTTCAAAGGCATG-TTGACTATAA
127 TTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTACAA
15038516 ATGGACTTTTCTTG-CTAATGGATGGCTTTCGCTTCA
1 ATGGACTTTTCTTGTC-AATGGATGGCTTTCGCTTCA
15038552 CGTTCCCCGA
Statistics
Matches: 3815, Mismatches: 866, Indels: 353
0.76 0.17 0.07
Matches are distributed among these distances:
164 127 0.03
165 4 0.00
168 7 0.00
169 105 0.03
170 565 0.15
171 1862 0.49
172 687 0.18
173 264 0.07
174 15 0.00
175 9 0.00
176 1 0.00
177 2 0.00
178 9 0.00
179 10 0.00
180 2 0.00
181 12 0.00
182 1 0.00
183 1 0.00
184 3 0.00
186 2 0.00
187 1 0.00
188 7 0.00
189 5 0.00
190 5 0.00
191 5 0.00
192 1 0.00
193 2 0.00
195 2 0.00
196 1 0.00
197 1 0.00
198 11 0.00
199 3 0.00
200 9 0.00
201 8 0.00
203 2 0.00
204 11 0.00
205 4 0.00
206 9 0.00
207 5 0.00
208 21 0.01
209 10 0.00
210 4 0.00
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34
Consensus pattern (170 bp):
ATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATTCAAACAACTAATTATGA
TCTGTTTTTACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTA
AAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTACAA
Found at i:15042947 original size:20 final size:20
Alignment explanation
Indices: 15042908--15042949 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
15042898 AGAAGAAGAA
* *
15042908 GAAGAAGCTGCTAGAGAAAT
1 GAAGAAGCTGCGAGAAAAAT
*
15042928 GAAGAAGCTGCGGGAAAAAT
1 GAAGAAGCTGCGAGAAAAAT
15042948 GA
1 GA
15042950 TATTTATAGC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.45, C:0.10, G:0.33, T:0.12
Consensus pattern (20 bp):
GAAGAAGCTGCGAGAAAAAT
Found at i:15043962 original size:17 final size:17
Alignment explanation
Indices: 15043928--15043962 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
15043918 TTGCCATGAT
**
15043928 TTATTTTTGAAAGGAAA
1 TTATTTTTGAAAAAAAA
15043945 TTATTTTTGAAAAAAAA
1 TTATTTTTGAAAAAAAA
15043962 T
1 T
15043963 GAATTAAGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.11, T:0.43
Consensus pattern (17 bp):
TTATTTTTGAAAAAAAA
Found at i:15044727 original size:342 final size:339
Alignment explanation
Indices: 15044103--15045804 Score: 1700
Period size: 342 Copynumber: 5.0 Consensus size: 339
15044093 TGACAGTTGG
* *
15044103 TTTTACCAAAAATAAAAGAAAATTCAACTTAAAATCATTTATAAAGTTATAAAACCATTTAAAGC
1 TTTTACCAAAAATGAAAGAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAAGC
* *
15044168 GAGTAACAAGGCTTTCGAAGGCATTAGTGACTATAAATGGACTTTTCTTCTCATTGGATGGCTTT
66 GAGTAACAAGGCTTTCAAAGGCATTAGTGACTATAAATGGACTTTTCTTCTCAATGGATGGCTTT
* * * * **
15044233 CGCTTCACGTCT-CTCGATGTAGACAATAAATTATGATCCGTTTTAACCAAAAATGAAAAATATT
131 CGCTTCACGTTTCCT-GATGCAAACAACAAATTATGATATGTTTT-ACCAAAAATGAAAAA-ATT
* *
15044297 CAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCAT
193 CAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACAAAGCTTTCAAAGGCAT
* * ** *
15044362 GAGTGACTACAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTGATTCAAAG
258 GAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCGATTCAAAC
* *
15044427 AACTAGTAATGATCTGT
323 AACTAATTATGATCTGT
* * *
15044444 TTTTACCAAAACTGAAAGAAAATTCAACTTAAAAATCATTTATAAAGTTACAAAACCATTTAAAG
1 TTTTACCAAAAATGAAAGAAAATTCAA-TTTAAAATCATTTATAAAGTTATAAAACCATTTAAAG
* * * *
15044509 TGAGTAACAAGGCTTTCAAAGGCATTAGTGACTATACATGGACTTTTCTTCTCATTGTATGGCTT
65 CGAGTAACAAGGCTTTCAAAGGCATTAGTGACTATAAATGGACTTTTCTTCTCAATGGATGGCTT
* * * * * **
15044574 TCGCTTCATGTTTCCTGATTCAAACAACTAGTAATGATATGTTTTTGCAAAAATGAAGGAAAATT
130 TCGCTTCACGTTTCCTGATGCAAACAACAAATTATGATATGTTTTACCAAAAATGAA--AAAATT
* * * * *
15044639 CAACTGAAAATGAGTTATAAAGTTATAAAACCATTTAAAGCGAGTAACAAAGCTTTCAAAGGCAT
193 CAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACAAAGCTTTCAAAGGCAT
* * ** ***
15044704 GAGTGACTATAAATGGACTTTTCTTCTCATTGGATGGCTTTCGCTTCACATTTCATAATGT-AAA
258 GAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCGAT-TCAAA
*
15044768 CAACAAATTATGATCT-T
322 CAACTAATTATGATCTGT
* * * * *
15044785 TTTTAACCAAAAATGAAAAAAAAAATTCAATTTAAAATCATTTATAAAGTCATAAAACTACTTCA
1 TTTT-ACCAAAAATG--AAAGAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAA
* * * * * ** *
15044850 AGCGAGTAACAAGGCTTTCAAAGGTATGAGTGACTATACATGGACGTTTATGGTCAATGGATGGG
63 AGCGAGTAACAAGGCTTTCAAAGGCATTAGTGACTATAAATGGACTTTTCTTCTCAATGGATGGC
** * * * * *
15044915 TTTTACTTCACTTTTCCT-AGTACAAGCATCCAATTATGATAT-TTATTACCCAAAAATGGAAAC
128 TTTCGCTTCACGTTTCCTGA-TGCAAACAACAAATTATGATATGTT-TTA-CCAAAAAT-GAAA-
* * * * * * *
15044978 AAATTCAATTTAAAATAATTTTTAAAGTTATAAAACTACTGAAAGCGAATAACAAGGCTTTCCAA
188 AAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACAAAGCTTTCAAA
* * * * * *
15045043 GGTATGAGTGACTATAAATGGAC-GTTGTTGTCAATGGAAGGCTTTCGCTTGATGTTTCCCGATG
253 GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCGATT
* * * *
15045107 CAAACATCAAATTATCATATGT
318 CAAACAACTAATTATGATCTGT
* * * *
15045129 TTTAACCAAAAACG--AGAAACATTCAATTTTAAAATCATTTCT-AGGATTATAAAACCATTT-A
1 TTTTACCAAAAATGAAAGAAA-ATTCAA-TTTAAAATCATTTATAAAG-TTATAAAACCATTTAA
* * **
15045190 AGGGAGTCATTAGGCTTTCAAAGGCA-T-GTTGACTATAAATGGACTTTTCTTGCT-AATGGATG
63 AGCGAGTAACAAGGCTTTCAAAGGCATTAG-TGACTATAAATGGACTTTTCTT-CTCAATGGATG
* * * * * * *
15045252 GCTTTCGCTTCACGTTCCCTGATGCAAATATCAAATTACGAT-TTTTTTGGAACAAAACTGAAAA
126 GCTTTCGCTTCACGTTTCCTGATGCAAACAACAAATTATGATATGTTTT--ACCAAAAATG-AAA
* * *
15045316 AAATTCAATTTTTAAATCATTTAT-AAGATTCTAAAACCATTTAAAGCGAGTAAC-AAGTCTTTC
188 AAATTCAA-TTTAAAATCATTTATAAAG-TTATAAAACCACTTAAAGCGAGTAACAAAG-CTTTC
* * * *
15045379 AAAGGCATAAGTGACTATAAATGGACTTTTTTTGCCAATCGATGGCTTTCGCTTCATGTTTCCCG
250 AAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCG
* **
15045444 ATGCAAACTTCTAATTATGATCTGT
315 ATTCAAACAACTAATTATGATCTGT
** * * * * * *
15045469 TTGAACAAAAAATGAAAAAAAAAATCAATTCAAAATCACTTATAAAGTTATAAAATCATTTAAAG
1 TTTTACCAAAAATG-AAAGAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAAG
* * ** * * *
15045534 TGAGTAACTAGGCTTTTGAAGGCATAAGTGACTATAAATGGACTCTTCTTGTCAATGGATGG-TT
65 CGAGTAACAAGGCTTTCAAAGGCATTAGTGACTATAAATGGACTTTTCTTCTCAATGGATGGCTT
*** * ** * *
15045598 TTTTTTCACATTTCCCAATGCAAACAACAAATTAT-AGTCTGGTTTAACCAAAAATGAAAAAAAT
130 TCGCTTCACGTTTCCTGATGCAAACAACAAATTATGA-TAT-GTTTTACCAAAAATG-AAAAAA-
* *
15045662 TTCAATTTAAAATCATTTATAAAGTGATAAAACCACTTAATA-CGAGTAAC-ACGACTTTCAAAG
191 TTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAA-AGCGAGTAACAAAG-CTTTCAAAG
* * ** *
15045725 GCATGAGTGACTACAAATGGACCTTTT-TTGTCAATGGATGGCTTTCACTTCACATTTCTCGATT
254 GCATGAGTGACTATAAATGGA-CTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCGATT
*
15045789 CAAACAACTAGTTATG
318 CAAACAACTAATTATG
15045805 TAAAGCCTGA
Statistics
Matches: 1116, Mismatches: 201, Indels: 87
0.79 0.14 0.06
Matches are distributed among these distances:
338 18 0.02
339 132 0.12
340 97 0.09
341 91 0.08
342 446 0.40
343 226 0.20
344 103 0.09
345 3 0.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (339 bp):
TTTTACCAAAAATGAAAGAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAAGC
GAGTAACAAGGCTTTCAAAGGCATTAGTGACTATAAATGGACTTTTCTTCTCAATGGATGGCTTT
CGCTTCACGTTTCCTGATGCAAACAACAAATTATGATATGTTTTACCAAAAATGAAAAAATTCAA
TTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACAAAGCTTTCAAAGGCATGAG
TGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCGATTCAAACAAC
TAATTATGATCTGT
Found at i:15045782 original size:171 final size:170
Alignment explanation
Indices: 15044102--15045796 Score: 1723
Period size: 170 Copynumber: 9.9 Consensus size: 170
15044092 GTGACAGTTG
* *
15044102 GTTTT-ACCAAAAATAAAAGAAAATTCAACTTAAAATCATTTATAAAGTTATAAAACCATTTAAA
1 GTTTTAACCAAAAATGAAA-AAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAA
* * * *
15044166 GCGAGTAACAAGGCTTTCGAAGGCATTAGTGACTATAAATGGACTTTTCTTCTCATTGGATGGCT
65 GCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCT
* * * * * *
15044231 TTCGCTTCACGTCTCTCGATGTAGACAATAAATTATGATCC
130 TTCGCTTCACGTTTCCCGATGCAAACAACAAATTATGATCT
* *
15044272 GTTTTAACCAAAAATGAAAAATATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAG
1 GTTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAAG
* *
15044337 CGAGTAACAAGGCTTTCGAAGGCATGAGTGACTACAAATGGACTTTTCTTGTCAATGGATGGCTT
66 CGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTT
* * ** * * * * *
15044402 TTGCTTCATGTTTCTTGATTCAAAGAACTAGTAATGATCT
131 TCGCTTCACGTTTCCCGATGCAAACAACAAATTATGATCT
* * * *
15044442 GTTTTTACCAAAACTGAAAGAAAATTCAACTTAAAAATCATTTATAAAGTTACAAAACCATTTAA
1 GTTTTAACCAAAAATGAAA-AAAATTCAA-TTTAAAATCATTTATAAAGTTATAAAACCATTTAA
* * * * * *
15044507 AGTGAGTAACAAGGCTTTCAAAGGCATTAGTGACTATACATGGACTTTTCTTCTCATTGTATGGC
64 AGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC
* * * * * * *
15044572 TTTCGCTTCATGTTTCCTGATTCAAACAACTAGTAATGATAT
129 TTTCGCTTCACGTTTCCCGATGCAAACAACAAATTATGATCT
** * * * * *
15044614 GTTTT-TGCAAAAATGAAGGAAAATTCAACTGAAAATGAGTTATAAAGTTATAAAACCATTTAAA
1 GTTTTAACCAAAAATGAA-AAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAA
* * *
15044678 GCGAGTAACAAAGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTCTCATTGGATGGCT
65 GCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCT
* *** *
15044743 TTCGCTTCACATTTCATAATGTAAACAACAAATTATGATCT
130 TTCGCTTCACGTTTCCCGATGCAAACAACAAATTATGATCT
* * * * *
15044784 TTTTTAACCAAAAATGAAAAAAAAAATTCAATTTAAAATCATTTATAAAGTCATAAAACTACTTC
1 GTTTTAACCAAAAATG---AAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTA
* * * * *
15044849 AAGCGAGTAACAAGGCTTTCAAAGGTATGAGTGACTATACATGGACGTTTATGGTCAATGGATGG
63 AAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGG
* ** * * * * * * *
15044914 GTTTTACTTCAC-TTTTCCTAGTACAAGCATCCAATTATGATAT
128 CTTTCGCTTCACGTTTCCCGA-TGCAAACAACAAATTATGATCT
* * * * * * *
15044957 -TTATTACCCAAAAATGGAAACAAATTCAATTTAAAATAATTTTTAAAGTTATAAAACTACTGAA
1 GTT-TTAACCAAAAAT-GAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAA
* * * * * *
15045021 AGCGAATAACAAGGCTTTCCAAGGTATGAGTGACTATAAATGGAC-GTTGTTGTCAATGGAAGGC
64 AGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC
* * * * *
15045085 TTTCGCTTGATGTTTCCCGATGCAAACATCAAATTATCATAT
129 TTTCGCTTCACGTTTCCCGATGCAAACAACAAATTATGATCT
* * * * *
15045127 GTTTTAACCAAAAACGAGAAACATTCAATTTTAAAATCATTTCT-AGGATTATAAAACCATTT-A
1 GTTTTAACCAAAAATGAAAAAAATTCAA-TTTAAAATCATTTATAAAG-TTATAAAACCATTTAA
* * ** *
15045190 AGGGAGTCATTAGGCTTTCAAAGGCATG-TTGACTATAAATGGACTTTTCTTG-CTAATGGATGG
64 AGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTC-AATGGATGG
* * *
15045253 CTTTCGCTTCACG-TTCCCTGATGCAAATATCAAATTACGAT-T
128 CTTTCGCTTCACGTTTCCC-GATGCAAACAACAAATTATGATCT
* * * *
15045295 TTTTTGGAA-CAAAACTGAAAAAAATTCAATTTTTAAATCATTTAT-AAGATTCTAAAACCATTT
1 GTTTT--AACCAAAAATGAAAAAAATTCAA-TTTAAAATCATTTATAAAG-TTATAAAACCATTT
* * * * *
15045358 AAAGCGAGTAACAAGTCTTTCAAAGGCATAAGTGACTATAAATGGACTTTTTTTGCCAATCGATG
62 AAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* ** *
15045423 GCTTTCGCTTCATGTTTCCCGATGCAAACTTCTAATTATGATCT
127 GCTTTCGCTTCACGTTTCCCGATGCAAACAACAAATTATGATCT
* * * * * *
15045467 GTTTGAACAAAAAATGAAAAAAAAAATCAATTCAAAATCACTTATAAAGTTATAAAATCATTTAA
1 GTTTTAACCAAAAATG--AAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAA
* * ** * *
15045532 AGTGAGTAACTAGGCTTTTGAAGGCATAAGTGACTATAAATGGACTCTTCTTGTCAATGGATGG-
64 AGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC
*** * *
15045596 TTTTTTTTCACATTTCCCAATGCAAACAACAAATTAT-AGTCT
129 TTTCGCTTCACGTTTCCCGATGCAAACAACAAATTATGA-TCT
* * *
15045638 GGTTTAACCAAAAATGAAAAAAATTTCAATTTAAAATCATTTATAAAGTGATAAAACCACTTAAT
1 GTTTTAACCAAAAATGAAAAAAA-TTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAA-
* * *
15045703 A-CGAGTAACACGACTTTCAAAGGCATGAGTGACTACAAATGGACCTTTT-TTGTCAATGGATGG
64 AGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATGGA-CTTTTCTTGTCAATGGATGG
* * * *
15045766 CTTTCACTTCACATTTCTCGATTCAAACAAC
128 CTTTCGCTTCACGTTTCCCGATGCAAACAAC
15045797 TAGTTATGTA
Statistics
Matches: 1268, Mismatches: 223, Indels: 67
0.81 0.14 0.04
Matches are distributed among these distances:
168 26 0.02
169 130 0.10
170 462 0.36
171 276 0.22
172 229 0.18
173 142 0.11
174 3 0.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (170 bp):
GTTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAAG
CGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTT
TCGCTTCACGTTTCCCGATGCAAACAACAAATTATGATCT
Found at i:15048893 original size:21 final size:21
Alignment explanation
Indices: 15048869--15048908 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
15048859 GTGACTTTAA
*
15048869 ATGGACTTTT-CTTCTCATTGG
1 ATGG-CTTTTGCTTCACATTGG
15048890 ATGGCTTTTGCTTCACATT
1 ATGGCTTTTGCTTCACATT
15048909 TCTTAGTGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.15, C:0.20, G:0.17, T:0.47
Consensus pattern (21 bp):
ATGGCTTTTGCTTCACATTGG
Found at i:15049544 original size:171 final size:171
Alignment explanation
Indices: 15048774--15050762 Score: 982
Period size: 171 Copynumber: 11.6 Consensus size: 171
15048764 ATCTTTTTAC
* * * * * *
15048774 CAAAAATGAAAGACAATTCAACTGAAAATCATTTACAAAGTTATAAAATTATTTAAAACGAGTAA
1 CAAAAATGAAAGAAAATTCAA-TTAAAATCATTTATAAAGTTAAAAAACTATTTAAAGCGAGTAA
*** * * * ** * * * ** **
15048839 CAAGAAATTCGAAGGCTTGAGTGACTTTAAATGGACTTTTCTTCTCATTGGATGGCTTTTGCTTC
65 CAAGGCTTTCAAAGGCATAAGTGACTACAAATGGACTTTTCCTGTCAATAAATGGCTTTCACTTC
** * * * * * *
15048904 ACATT-TCTTAGTGCAAACAACAAATTTTGATATG-CTTAAC
130 ACATTATCCCAATACAAACAACCAATTATGATATGTTTTAAT
** * * * * * * *
15048944 CAACTATGATAA-CAATTTCAACATAAAATAATTTATAAAATTATAAAACTACTTAAAGCGAGTA
1 CAAAAATGA-AAGAAAATTCAA-TTAAAATCATTTATAAAGTTAAAAAACTATTTAAAGCGAGTA
* * * * * **
15049008 ACAGGGCTTTTAAAGGCATGAGTGACTACAAATGGACTTTTCGTGTCAA-AGGATGGCTTTTGCT
64 ACAAGGCTTTCAAAGGCATAAGTGACTACAAATGGACTTTTCCTGTCAATA-AATGGCTTTCACT
* * * * * * * *
15049072 T--CA-TGTCTCATGATTCAAACAACTAGTAATGATTTGTTTTTACAAAA
128 TCACATTATCCCA--ATACAAACAACCAATTATGATATG-TTTT---AAT
* * *
15049119 AAAAAATGAAAGAAAATTCAATTGAAAATCATTTATAAAGTAAAAAAACCATTTAAAGCGAGTAA
1 CAAAAATGAAAGAAAATTCAATT-AAAATCATTTATAAAGTTAAAAAACTATTTAAAGCGAGTAA
* * * * *
15049184 CAAGGATTTTAAAGGCATGAGTGACTACAAATGGACTTTTCTTGTCAATAGATGGCTTTCACTTC
65 CAAGGCTTTCAAAGGCATAAGTGACTACAAATGGACTTTTCCTGTCAATAAATGGCTTTCACTTC
* * * * * *
15049249 ACATTATTCCGATTCAAACAACTAGTTATGATATGTTTTTAT
130 ACATTATCCCAATACAAACAACCAATTATGATATGTTTTAAT
* *
15049291 CAAAAATGAAAGAAAATTCAACTTGAAATCATTTATAAAGTTATAAAACTATTTAAAGCGAGTAA
1 CAAAAATGAAAGAAAATTCAA-TTAAAATCATTTATAAAGTTAAAAAACTATTTAAAGCGAGTAA
* * * **
15049356 CAAGACTTTCGAAGGCATAAGTGACAACAAATGGACTTTTCCTGTCAATAAATGTG-TTTTGCTT
65 CAAGGCTTTCAAAGGCATAAGTGACTACAAATGGACTTTTCCTGTCAATAAATG-GCTTTCACTT
* *
15049420 CACATT-TCCCAATACAAGCATCCAATTATGATATGTTTTAA-
129 CACATTATCCCAATACAAACAACCAATTATGATATGTTTTAAT
* * * * *** *
15049461 CTAAAAATGAAAAAAAATTCAATTCAAAATCACTTGTAAAGTTAGAAAACTGGATAAAGTGAGTA
1 C-AAAAATGAAAGAAAATTCAATT-AAAATCATTTATAAAGTTAAAAAACTATTTAAAGCGAGTA
* * ** ** * **
15049526 ACAAGGCTTTCAAAGGCATAAGTGACTATAAATGGACGTTTGTTGTCAATGGATGGCTTCCGTTT
64 ACAAGGCTTTCAAAGGCATAAGTGACTACAAATGGACTTTTCCTGTCAATAAATGGCTTTCACTT
** * * ** * *
15049591 CATGTT-TCCTAATTC-AATTACCAAATTATGTTTTGTTTTAA-
129 CACATTATCCCAATACAAACAACC-AATTATGATATGTTTTAAT
* * * * * * *
15049632 CCAAAAT-AAATGAAAATTAAAGTTAAAATCATTTATAAA-TTATAAATCCAGTTAAAGCGGGTA
1 CAAAAATGAAA-GAAAATTCAA-TTAAAATCATTTATAAAGTTAAAAAACTATTTAAAGCGAGTA
** * * * * * * ** **
15049695 ATTACGCTTTCGAAGGCATGAGTGACTATAGATGGAC-TTTCAC-GCCAATTGATGGCCTTT-GT
64 ACAAGGCTTTCAAAGGCATAAGTGACTACAAATGGACTTTTC-CTGTCAATAAATGG-CTTTCAC
** ** * * * * *
15049757 TTCATGTT-TCCTGATACAAACATCAAATTATAATTTTTTTTTGAA-
127 TTCACATTATCCCAATACAAACAACCAATTATGA-TATGTTTT-AAT
* * * * * * * *
15049802 CCAAAATGAGA-AAAATTAAATTTTAAAATCATCTAT-AAGATTATAAAACCATATAAAGTGAGT
1 CAAAAATGAAAGAAAATTCAA--TTAAAATCATTTATAAAG-TTAAAAAACTATTTAAAGCGAGT
** * * ** *
15049865 AACTGGGCTTTCGAAGGCATTAGTGACT-CTAAATGGACTTTTCCTGTCAATGGATGGCTTTCGC
63 AACAAGGCTTTCAAAGGCATAAGTGACTAC-AAATGGACTTTTCCTGTCAATAAATGGCTTTCAC
* * * *
15049929 TT-ACATT-TCCTCGATGCAAACAACAAATTATGATATGTTTTAAC
127 TTCACATTATCC-CAATACAAACAACCAATTATGATATGTTTTAAT
* * * *
15049973 CAAAAATGAAAGAAAATTCAGCTTAAAATTATTTAT-AAGATTATAAAACTATTTAAAGTGAGTA
1 CAAAAATGAAAGAAAATTCA-ATTAAAATCATTTATAAAG-TTAAAAAACTATTTAAAGCGAGTA
* * ** * * * * * **
15050037 ACTAGACTTTTGAAGGCAT-GGATGACTATAAATGAACTTTTCTTTTCAATAGCAA--GCTTTTG
64 ACAAGGCTTTCAAAGGCATAAG-TGACTACAAATGGACTTTTCCTGTCAATA--AATGGCTTTCA
** **** * * * *
15050099 CTTCATGTT-TCTTGGTGCAAACAACAAATTTTGATCA-GTTTTAAC
126 CTTCACATTATCCCAATACAAACAACCAATTATGAT-ATGTTTTAAT
* * * * * * * *
15050144 CAAAAATGATAA-CAATTTTAATTTAAAATTATTTATAAAGTTATAAAACCACTTAAAGCGAGCA
1 CAAAAATGA-AAGAAAATTCAA-TTAAAATCATTTATAAAGTTAAAAAACTATTTAAAGCGAGTA
* ** * * * ** * *
15050208 ACAAGGCTTTCGAAGGTGTGAGTAACTACAAATGGACTTTTCTTGTCAATGGATGACTTTCGCTT
64 ACAAGGCTTTCAAAGGCATAAGTGACTACAAATGGACTTTTCCTGTCAATAAATGGCTTTCACTT
* * * * *
15050273 CACATT-TCCCAATTCAAACAA-CAAGTTATGTTCTGTTTTTAC
129 CACATTATCCCAATACAAACAACCAA-TTATGATATGTTTTAAT
* * * * * * * *
15050315 CAAAAATTAAAGAAAATTCAACTGAAAATTATTTACAAAGTT-ATACATTCATTTAAAGCAAGTA
1 CAAAAATGAAAGAAAATTCAA-TTAAAATCATTTATAAAGTTAAAAAACT-ATTTAAAGCGAGTA
** * * * * * ** *
15050379 ACAAGAAATTT-GAAGG-ATTGAGTGACTATAAATGGACTTTTCTTCTC-ATGGGATGGCTTTCG
64 ACAAG-GCTTTCAAAGGCA-TAAGTGACTACAAATGGACTTTTCCTGTCAAT-AAATGGCTTTCA
* **** * * * * *
15050441 CTTCACGTT-TCTTGGTGCAAACAACAAATTTTGATATGCTTTAAC
126 CTTCACATTATCCCAATACAAACAACCAATTATGATATGTTTTAAT
* * * * * * * *
15050486 CAAAAATTATAA-CAATTTAAATTTAAAATAATTTATAAAGTTATAAAACCACTTAAAGCGAGTA
1 CAAAAATGA-AAGAAAATTCAA-TTAAAATCATTTATAAAGTTAAAAAACTATTTAAAGCGAGTA
* * * * * ** *
15050550 ATAAGGCTTTCGAAGGCATGAGTGACTACAAATTGACTTTTCTTGTCAATGGATGGCTTTCGCTT
64 ACAAGGCTTTCAAAGGCATAAGTGACTACAAATGGACTTTTCCTGTCAATAAATGGCTTTCACTT
** ** * * * * * * *
15050615 CATGTT-TCCTGATTCAAACAACTAGTAATGATCTGTTTTTAC
129 CACATTATCCCAATACAAACAACCAATTATGATATGTTTTAAT
* *
15050657 CAAAAATGAAAGAAAATTCAACTTAAAATCATTTATAAAGTTATAAAACCATTTAAAGCGAGTAA
1 CAAAAATGAAAGAAAATTCAA-TTAAAATCATTTATAAAGTTAAAAAACTATTTAAAGCGAGTAA
* ** *
15050722 CAAGGCTTTCAAAGGCATGACCGACTATAAATGGACTTTTC
65 CAAGGCTTTCAAAGGCATAAGTGACTACAAATGGACTTTTC
15050763 NNNNNNNNNN
Statistics
Matches: 1443, Mismatches: 309, Indels: 133
0.77 0.16 0.07
Matches are distributed among these distances:
167 1 0.00
168 42 0.03
169 76 0.05
170 187 0.13
171 807 0.56
172 184 0.13
173 4 0.00
174 3 0.00
175 111 0.08
176 23 0.02
177 2 0.00
178 3 0.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.33
Consensus pattern (171 bp):
CAAAAATGAAAGAAAATTCAATTAAAATCATTTATAAAGTTAAAAAACTATTTAAAGCGAGTAAC
AAGGCTTTCAAAGGCATAAGTGACTACAAATGGACTTTTCCTGTCAATAAATGGCTTTCACTTCA
CATTATCCCAATACAAACAACCAATTATGATATGTTTTAAT
Found at i:15050222 original size:342 final size:342
Alignment explanation
Indices: 15048767--15050762 Score: 1827
Period size: 342 Copynumber: 5.8 Consensus size: 342
15048757 TTATGTTATC
* * * * ** *
15048767 TTTTTACCAAAAATGAAAGAC-AATTCAACTGAAAATCATTTACAAAGTTATAAAATTATTTAAA
1 TTTTAACCAAAAATGAAA-ACAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAA
* *** * ** * *
15048831 ACGAGTAACAAGAAATTCGAAGGCTTGAGTGACTTTAAATGGACTTTTCTTCTCATTGGATGGCT
65 GCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTACAAATGGACTTTTCTTGTCAATGGATGGCT
* * * * * * ** *
15048896 TTTGCTTCACATTTCTTAG-TGCAAACAACAAATTTTGATATG-CTTAACCAACTATGATAA-CA
130 TTCGCTTCACATTTCCTCGATTCAAACAACAAATTATGATATGTTTTAACCAAAAATGA-AAGAA
* * * * * * * **
15048958 ATTTCAACATAAAATAATTTATAAAATTATAAAACTACTTAAAGCGAGTAACAGGGCTTTTAAAG
194 AATTCAACTTAAAATCATTTATAAAGTTATAAAACTATTTAAAGCGAGTAACAAGACTTTCGAAG
* * * * *
15049023 GCATGAGTGACTACAAATGGACTTTTCGTGTCAA-AGGATGGCTTTTGCTTCATGTCTCATGATT
259 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATA-GATGGCTTTTGCTTCATGTTTCCTGATA
* * * *
15049087 CAAACAACTAGTAATGATTTG
323 CAAACAACAAATTATGA-TAG
** * * * *
15049108 TTTTTACAAAAAAAAAATGAAAGA-AAATTCAATTGAAAATCATTTATAAAGTAAAAAAACCATT
1 -TTTT---AACCAAAAATGAAA-ACAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACT
* ** *
15049172 TAAAGCGAGTAACAAGGATTTTAAAGGCATGAGTGACTACAAATGGACTTTTCTTGTCAATAGAT
61 TAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTACAAATGGACTTTTCTTGTCAATGGAT
* * * * * *
15049237 GGCTTTCACTTCACATTATTC-CGATTCAAACAACTAGTTATGATATGTTTTTATCAAAAATGAA
126 GGCTTTCGCTTCACATT-TCCTCGATTCAAACAACAAATTATGATATGTTTTAACCAAAAATGAA
*
15049301 AGAAAATTCAACTTGAAATCATTTATAAAGTTATAAAACTATTTAAAGCGAGTAACAAGACTTTC
190 AGAAAATTCAACTTAAAATCATTTATAAAGTTATAAAACTATTTAAAGCGAGTAACAAGACTTTC
* * * * * ** *
15049366 GAAGGCATAAGTGACAACAAATGGACTTTTCCTGTCAATAAATGTG-TTTTGCTTCACATTTCCC
255 GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATAGATG-GCTTTTGCTTCATGTTTCCT
* * * *
15049430 AATACAAGCATCCAATTATGATATG
319 GATACAAACAACAAATTATGATA-G
* * * * * * ****
15049455 TTTTAACTAAAAATGAAAAAAAATTCAATTCAAAATCACTTGTAAAGTTAGAAAACTGGATAAAG
1 TTTTAACCAAAAATGAAAACAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAG
* * * * * *
15049520 TGAGTAACAAGGCTTTCAAAGGCATAAGTGACTATAAATGGACGTTTGTTGTCAATGGATGGCTT
66 CGAGTAACAAGGCTTTCGAAGGCATGAGTGACTACAAATGGACTTTTCTTGTCAATGGATGGCTT
* * ** * ** * * *
15049585 CCGTTTCATGTTTCCT-AATTCAATTACCAAATTATGTTTTGTTTTAACC-AAAAT-AAATGAAA
131 TCGCTTCACATTTCCTCGATTCAAACAACAAATTATGATATGTTTTAACCAAAAATGAAA-GAAA
* * * * * * * *
15049647 ATTAAAGTTAAAATCATTTATAAA-TTATAAATCCAGTTAAAGCGGGTAATTACG-CTTTCGAAG
195 ATTCAACTTAAAATCATTTATAAAGTTATAAAACTATTTAAAGCGAGTAA-CAAGACTTTCGAAG
* ** * * * *
15049710 GCATGAGTGACTATAGATGGAC-TTTCACGCCAATTGATGGCCTTTGTTTCATGTTTCCTGATAC
259 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTTTGCTTCATGTTTCCTGATAC
* * **
15049774 AAACATCAAATTATAATTTTT
324 AAACAACAAATTATGA--TAG
* * *
15049795 TTTTGAACC-AAAATGAGAA-AAATTAAATTTTAAAATCATCTAT-AAGATTATAAAACCA-TAT
1 TTTT-AACCAAAAATGAAAACAAATTCAA-TTTAAAATCATTTATAAAG-TTATAAAACCACT-T
* ** * *
15049856 AAAGTGAGTAACTGGGCTTTCGAAGGCATTAGTGACT-CTAAATGGACTTTTCCTGTCAATGGAT
62 AAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTAC-AAATGGACTTTTCTTGTCAATGGAT
*
15049920 GGCTTTCGCTT-ACATTTCCTCGATGCAAACAACAAATTATGATATGTTTTAACCAAAAATGAAA
126 GGCTTTCGCTTCACATTTCCTCGATTCAAACAACAAATTATGATATGTTTTAACCAAAAATGAAA
* * * * *
15049984 GAAAATTCAGCTTAAAATTATTTAT-AAGATTATAAAACTATTTAAAGTGAGTAACTAGACTTTT
191 GAAAATTCAACTTAAAATCATTTATAAAG-TTATAAAACTATTTAAAGCGAGTAACAAGACTTTC
* * * *
15050048 GAAGGCATG-GATGACTATAAATGAACTTTTCTTTTCAATAGCA-AGCTTTTGCTTCATGTTTCT
255 GAAGGCATGAG-TGACTATAAATGGACTTTTCTTGTCAATAG-ATGGCTTTTGCTTCATGTTTCC
* * *
15050111 TGGTGCAAACAACAAATTTTGATCAG
318 TGATACAAACAACAAATTATGAT-AG
* * * *
15050137 TTTTAACCAAAAATGATAACAATTTTAATTTAAAATTATTTATAAAGTTATAAAACCACTTAAAG
1 TTTTAACCAAAAATGAAAACAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAG
* ** * *
15050202 CGAGCAACAAGGCTTTCGAAGGTGTGAGTAACTACAAATGGACTTTTCTTGTCAATGGATGACTT
66 CGAGTAACAAGGCTTTCGAAGGCATGAGTGACTACAAATGGACTTTTCTTGTCAATGGATGGCTT
* * * * * *
15050267 TCGCTTCACATTTCC-CAATTCAAACAACAAGTTATGTTCTGTTTTTACCAAAAATTAAAGAAAA
131 TCGCTTCACATTTCCTCGATTCAAACAACAAATTATGATATGTTTTAACCAAAAATGAAAGAAAA
* * * * * * *
15050331 TTCAACTGAAAATTATTTACAAAGTTAT-ACATTCATTTAAAGCAAGTAACAAGAAATTT-GAAG
196 TTCAACTTAAAATCATTTATAAAGTTATAAAACT-ATTTAAAGCGAGTAACAAG-ACTTTCGAAG
* * * * * *
15050394 G-ATTGAGTGACTATAAATGGACTTTTCTTCTC-ATGGGATGGCTTTCGCTTCACGTTTCTTGGT
259 GCA-TGAGTGACTATAAATGGACTTTTCTTGTCAAT-AGATGGCTTTTGCTTCATGTTTCCTGAT
* *
15050457 GCAAACAACAAATTTTGATATG
322 ACAAACAACAAATTATGATA-G
* * * * * *
15050479 CTTTAACCAAAAATTATAACAATTTAAATTTAAAATAATTTATAAAGTTATAAAACCACTTAAAG
1 TTTTAACCAAAAATGAAAACAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAG
* *
15050544 CGAGTAATAAGGCTTTCGAAGGCATGAGTGACTACAAATTGACTTTTCTTGTCAATGGATGGCTT
66 CGAGTAACAAGGCTTTCGAAGGCATGAGTGACTACAAATGGACTTTTCTTGTCAATGGATGGCTT
** * * * * *
15050609 TCGCTTCATGTTTCCT-GATTCAAACAACTAGTAATGATCTGTTTTTACCAAAAATGAAAGAAAA
131 TCGCTTCACATTTCCTCGATTCAAACAACAAATTATGATATGTTTTAACCAAAAATGAAAGAAAA
* * *
15050673 TTCAACTTAAAATCATTTATAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCAAAGGC
196 TTCAACTTAAAATCATTTATAAAGTTATAAAACTATTTAAAGCGAGTAACAAGACTTTCGAAGGC
**
15050738 ATGACCGACTATAAATGGACTTTTC
261 ATGAGTGACTATAAATGGACTTTTC
15050763 NNNNNNNNNN
Statistics
Matches: 1349, Mismatches: 254, Indels: 102
0.79 0.15 0.06
Matches are distributed among these distances:
338 1 0.00
339 59 0.04
340 176 0.13
341 80 0.06
342 575 0.43
343 184 0.14
344 1 0.00
345 116 0.09
346 27 0.02
347 128 0.09
348 2 0.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.33
Consensus pattern (342 bp):
TTTTAACCAAAAATGAAAACAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAG
CGAGTAACAAGGCTTTCGAAGGCATGAGTGACTACAAATGGACTTTTCTTGTCAATGGATGGCTT
TCGCTTCACATTTCCTCGATTCAAACAACAAATTATGATATGTTTTAACCAAAAATGAAAGAAAA
TTCAACTTAAAATCATTTATAAAGTTATAAAACTATTTAAAGCGAGTAACAAGACTTTCGAAGGC
ATGAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTTTGCTTCATGTTTCCTGATACAA
ACAACAAATTATGATAG
Found at i:15050478 original size:513 final size:515
Alignment explanation
Indices: 15048752--15050762 Score: 1964
Period size: 513 Copynumber: 3.9 Consensus size: 515
15048742 CCAGGTCGTG
* *
15048752 ACAAGTTATGTTATCTTTTTACCAAAAATGAAAGACAATTCAACTGAAAATCATTTACAAAGTTA
1 ACAAGTTATGTTATGTTTTTACCAAAAATGAAAGAAAATTCAACTGAAAATCATTTACAAAGTTA
* * *
15048817 TAAAATTATTTAAAACGAGTAACAAGAAA-TTCGAAGGC-TTGAGTGACTTTAAATGGACTTTTC
66 TAAAATCATTTAAAGCGAGTAACAAGAAATTTCGAAGGCATTGAGTGACTATAAATGGACTTTTC
* * * * * * *
15048880 TTCTCATTGGATGGCTTTTGCTTCACATTTCTTAGTGCAAACAACAAATTTTGATATG-CTTAAC
131 CTCTCAATGGATGGCTTTCGCTTCACATTTCTCAATGCAAACAACAAATTATGATATGTTTTAAC
** * * * *
15048944 CAACTATGATAACAATTTCAACATAAAATAATTTATAAAATTATAAAACTACTTAAAGCGAGTAA
196 CAAAAATGATAAAAAATTCAACTTAAAATAATTTATAAGATTATAAAACTACTTAAAGCGAGTAA
* * * *
15049009 C-AGGGCTTTTAAAGGCATGAGTGACTACAAATGGACTTTTCGTGTCAAAGGATGGCTTTTGCTT
261 CTA-GGCTTTCAAAGGCATGAGTGACTACAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTT
* * * * * **
15049073 CATGTCTCATGATTCAAACAACTAGTAATGATTTGTTTTTACAAAAAAAAAATGAAAGAAAATTC
325 CATGTTTCCTGATTCAAACAACAAATAATGATCTG-TTTT---AACCAAAAATGAAAGAAAATTC
* * * * *
15049138 AATTGAAAATCATTTATAAAGTAAAAAAACCATTTAAAGCGAGTAACAAGGATTTTAAAGGCATG
386 AATTTAAAATCATTTATAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCAAAGGCATG
* * *
15049203 AGTGACTACAAATGGACTTTTCTTGTCAATAGATGGCTTTCACTTCACATTATTCCGATTCAAAC
451 AGTGACTACAAATGGACTTTTCTTGTCAATAGATGACTTTCGCTTCACATT-TCCCGATTCAAAC
15049268 A
515 A
* * * *
15049269 ACTAGTTATGATATGTTTTTATCAAAAATGAAAGAAAATTCAACTTG-AAATCATTTATAAAGTT
1 ACAAGTTATGTTATGTTTTTACCAAAAATGAAAGAAAATTCAAC-TGAAAATCATTTACAAAGTT
* * * *
15049333 ATAAAA-CTATTTAAAGCGAGTAACAAG-ACTTTCGAAGGCA-TAAGTGACAACAAATGGACTTT
65 ATAAAATC-ATTTAAAGCGAGTAACAAGAAATTTCGAAGGCATTGAGTGACTATAAATGGACTTT
* ** * * * * * *
15049395 TCCTGTCAATAAATGTG-TTTTGCTTCACATTTCCCAATACAAGCATCCAATTATGATATGTTTT
129 TCCTCTCAATGGATG-GCTTTCGCTTCACATTTCTCAATGCAAACAACAAATTATGATATGTTTT
* * * * *** *
15049459 AACTAAAAATGAAAAAAAATTCAA-TTCAAAATCACTTGTA-AAG-TTAGAAAACTGGATAAAGT
193 AACCAAAAATGATAAAAAATTCAACTT-AAAAT-AATT-TATAAGATTATAAAACTACTTAAAGC
* * * * * *
15049521 GAGTAACAAGGCTTTCAAAGGCATAAGTGACTATAAATGGACGTTTGTTGTCAATGGATGGCTTC
255 GAGTAACTAGGCTTTCAAAGGCATGAGTGACTACAAATGGACTTTTCTTGTCAATGGATGGCTTT
* * ** * * * *
15049586 CGTTTCATGTTTCCTAATTCAATTACCAAATTATGTTTTGTTTTAACC-AAAAT-AAATGAAAAT
320 CGCTTCATGTTTCCTGATTCAAACAACAAATAATGATCTGTTTTAACCAAAAATGAAA-GAAAAT
* * * * * ** * *
15049649 TAAAGTTAAAATCATTTATAAA-TTATAAATCCAGTTAAAGCGGGTAATTACGCTTTCGAAGGCA
384 TCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCAAAGGCA
* * ** * * * * ** * *
15049713 TGAGTGACTATAGATGGAC-TTTCACGCCAATTGATGGCCTTT-GTTTCATGTTTCCTGATACAA
449 TGAGTGACTACAAATGGACTTTTCTTGTCAATAGAT-GACTTTCGCTTCACATTTCCCGATTCAA
15049776 ACA
513 ACA
* * * * * * * * * *
15049779 TCAAATTATAATT-TTTTTTTGAACC-AAAATGAGA-AAAATTAAATTTTAAAATCATCTA-TAA
1 ACAAGTTAT-GTTATGTTTTT--ACCAAAAATGAAAGAAAATTCAA-CTGAAAATCATTTACAAA
* * * * *** *
15049840 GATTATAAAACCATATAAAGTGAGTAAC-TGGGCTTTCGAAGGCATT-AGTGACTCTAAATGGAC
62 G-TTATAAAATCATTTAAAGCGAGTAACAAGAAATTTCGAAGGCATTGAGTGACTATAAATGGAC
* *
15049903 TTTTCCTGTCAATGGATGGCTTTCGCTT-ACATTTCCTCGATGCAAACAACAAATTATGATATGT
126 TTTTCCTCTCAATGGATGGCTTTCGCTTCACATTT-CTCAATGCAAACAACAAATTATGATATGT
* * *
15049967 TTTAACCAAAAATGA-AAGAAAATTCAGCTTAAAATTATTTATAAGATTATAAAACTATTTAAAG
190 TTTAACCAAAAATGATAA-AAAATTCAACTTAAAATAATTTATAAGATTATAAAACTACTTAAAG
* * ** * * * * *
15050031 TGAGTAACTAGACTTTTGAAGGCATG-GATGACTATAAATGAACTTTTCTTTTCAATAGCA-AGC
254 CGAGTAACTAGGCTTTCAAAGGCATGAG-TGACTACAAATGGACTTTTCTTGTCAAT-GGATGGC
* * * * ** * *
15050094 TTTTGCTTCATGTTTCTTGGTGCAAACAACAAATTTTGATCAGTTTTAACCAAAAATGATAA-CA
317 TTTCGCTTCATGTTTCCTGATTCAAACAACAAATAATGATCTGTTTTAACCAAAAATGA-AAGAA
* * * * * *
15050158 ATTTTAATTTAAAATTATTTATAAAGTTATAAAACCACTTAAAGCGAGCAACAAGGCTTTCGAAG
381 AATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCAAAG
** * * *
15050223 GTGTGAGTAACTACAAATGGACTTTTCTTGTCAATGGATGACTTTCGCTTCACATTTCCCAATTC
446 GCATGAGTGACTACAAATGGACTTTTCTTGTCAATAGATGACTTTCGCTTCACATTTCCCGATTC
15050288 AAACA
511 AAACA
* * *
15050293 ACAAGTTATGTTCTGTTTTTACCAAAAATTAAAGAAAATTCAACTGAAAATTATTTACAAAGTTA
1 ACAAGTTATGTTATGTTTTTACCAAAAATGAAAGAAAATTCAACTGAAAATCATTTACAAAGTTA
* * *
15050358 TACATTCATTTAAAGCAAGTAACAAGAAATTT-GAAGG-ATTGAGTGACTATAAATGGACTTTTC
66 TAAAATCATTTAAAGCGAGTAACAAGAAATTTCGAAGGCATTGAGTGACTATAAATGGACTTTTC
* * *** * *
15050421 TTCTC-ATGGGATGGCTTTCGCTTCACGTTTCTTGGTGCAAACAACAAATTTTGATATGCTTTAA
131 CTCTCAAT-GGATGGCTTTCGCTTCACATTTCTCAATGCAAACAACAAATTATGATATGTTTTAA
* * * * * *
15050485 CCAAAAATTATAACAATTTAAATTTAAAATAATTTATAA-AGTTATAAAACCACTTAAAGCGAGT
195 CCAAAAATGATAAAAAATTCAACTTAAAATAATTTATAAGA-TTATAAAACTACTTAAAGCGAGT
* *
15050549 AA-TAAGGCTTTCGAAGGCATGAGTGACTACAAATTGACTTTTCTTGTCAATGGATGGCTTTCGC
259 AACT-AGGCTTTCAAAGGCATGAGTGACTACAAATGGACTTTTCTTGTCAATGGATGGCTTTCGC
* * *
15050613 TTCATGTTTCCTGATTCAAACAACTAGTAATGATCTGTTTTTACCAAAAATGAAAGAAAATTCAA
323 TTCATGTTTCCTGATTCAAACAACAAATAATGATCTGTTTTAACCAAAAATGAAAGAAAATTCAA
* *
15050678 CTTAAAATCATTTATAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAC
388 TTTAAAATCATTTATAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAG
* *
15050743 CGACTATAAATGGACTTTTC
453 TGACTACAAATGGACTTTTC
15050763 NNNNNNNNNN
Statistics
Matches: 1192, Mismatches: 253, Indels: 102
0.77 0.16 0.07
Matches are distributed among these distances:
509 2 0.00
510 51 0.04
511 255 0.21
512 105 0.09
513 419 0.35
514 70 0.06
516 1 0.00
517 156 0.13
518 125 0.10
519 6 0.01
520 2 0.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.33
Consensus pattern (515 bp):
ACAAGTTATGTTATGTTTTTACCAAAAATGAAAGAAAATTCAACTGAAAATCATTTACAAAGTTA
TAAAATCATTTAAAGCGAGTAACAAGAAATTTCGAAGGCATTGAGTGACTATAAATGGACTTTTC
CTCTCAATGGATGGCTTTCGCTTCACATTTCTCAATGCAAACAACAAATTATGATATGTTTTAAC
CAAAAATGATAAAAAATTCAACTTAAAATAATTTATAAGATTATAAAACTACTTAAAGCGAGTAA
CTAGGCTTTCAAAGGCATGAGTGACTACAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTC
ATGTTTCCTGATTCAAACAACAAATAATGATCTGTTTTAACCAAAAATGAAAGAAAATTCAATTT
AAAATCATTTATAAAGTTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGA
CTACAAATGGACTTTTCTTGTCAATAGATGACTTTCGCTTCACATTTCCCGATTCAAACA
Found at i:15065709 original size:172 final size:171
Alignment explanation
Indices: 15065272--15066592 Score: 1186
Period size: 172 Copynumber: 7.7 Consensus size: 171
15065262 NNNNNNNNNC
** * * *
15065272 TTAAAGCGAGTAAGAAGGC-TTCGAAGGCATGAGTGACTATAAATGGGCTTCTGTTATCAATGGA
1 TTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGA
*** * * * * *
15065336 TGGCTTTCGCTTCATGTTTCTTGATGCAAATAACAAATTATCATCTGTTTTAACTAAAAAAG-AG
66 TGGCTTTCGCTTCATGTTTCCCAATGCAAACAACAAATTATGATCTGTTTTAACCAAAAATGAAA
* * * *
15065400 AAACATTCAATTTTCAAACCATTTATAGGATTATAAAACCAT
131 AAAAATTCAA-TTTAAAATCATTTATAAGATTATAAAACCAT
* * ** *
15065442 TTAAAGGGAGTAACTAGGCTTTC-AGAGGCATG-CTGACTATAAACAGACTTTTCTTGTCAATGG
1 TTAAAGCGAGTAACTAGGCTTTCGA-AGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGG
* * * * * *
15065505 ATGGCTTTCG-TTCCATATTTCCTAATGCAAACAACAAATTATGGTCTCTTTTAGCGAAAAATGA
65 ATGGCTTTCGCTT-CATGTTTCCCAATGCAAACAACAAATTATGATCTGTTTTAACCAAAAATG-
* *
15065569 AAAAAAAATCTCAACTTAAAATCATTTATAAGATTATAAAGCCAT
128 AAAAAAAAT-TCAATTTAAAATCATTTATAAGATTATAAAACCAT
* * * *
15065614 TTAAAGCAAGCAGCTAGGCGTTT-GAAGCCATGAGTGACTATAAATGGACTTTTCTTATCAATGG
1 TTAAAGCGAGTAACTAGGC-TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGG
* * * * **
15065678 ATGGCTTTCGCTT-ACGTTTCCCAATGCAAACAATAAATGATTATCTGTTTTAATGAAAAATGAA
65 ATGGCTTTCGCTTCATGTTTCCCAATGCAAACAACAAATTATGATCTGTTTTAACCAAAAATGAA
* * ** * *
15065742 AGAAAACTCAATTTAAAATTGTCTCCA-AAG-TTATAAAACCAC
130 AAAAAATTCAATTTAAAATCAT-T-TATAAGATTATAAAACCAT
* * * * **
15065784 TTAAAGCTAGTAAATAGGCTTACGAAGGCATGAGTGACTACAAATGGAC-TTTCTTGCCAATGGA
1 TTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGA
** * * * * * * * *
15065848 TGGCTTTTTCTTCACGTTTCTCGATGTAAACAACTAGTTATGATCTATTTTTACCAAAAATGAAA
66 TGGCTTTCGCTTCATGTTTCCCAATGCAAACAACAAATTATGATCTGTTTTAACCAAAAATGAAA
* *
15065913 GAAAATTCAACTTAAAATCATTTATAA-AGTTATAAAACCAT
131 AAAAATTCAATTTAAAATCATTTATAAGA-TTATAAAACCAT
* * *
15065954 TTAAAGCGAGT-A-TAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCATTGG
1 TTAAAGCGAGTAACT-AGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGG
* * * * *** *
15066017 ATAGCTTTCGCATCATGTTTCCCAATGCAAACATCTAATTATGATCTGTTTTAACTTGAGATGAA
65 ATGGCTTTCGCTTCATGTTTCCCAATGCAAACAACAAATTATGATCTGTTTTAACCAAAAATGAA
* * * *
15066082 AAAAATTTTGAA-TTAAAATCATTTATAAGATTATAAACCCGT
130 AAAAA-ATTCAATTTAAAATCATTTATAAGATTATAAAACCAT
* * * * * * * * * *
15066124 CTAAAGCGAGTAACTCA-ACTTTCGAAGGCACGTGTAACTATAAATGGCCTTTTTTTCTCATTGA
1 TTAAAGCGAGTAACT-AGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGG
* * * * *
15066188 ATGGGTTTCGCTTCACGTTTCCCCATGCAGACAACAAATTATGATCTGTGTTTACCCAAAAATGA
65 ATGGCTTTCGCTTCATGTTTCCCAATGCAAACAACAAATTATGATCTGT-TTTAACCAAAAATGA
* * *
15066253 TAAAGAATTCAATTTAAAATCATTTATAA-AGTTATAAAACCAC
129 AAAAAAATTCAATTTAAAATCATTTATAAGA-TTATAAAACCAT
*** * * * *
15066296 TTAAAATAAGTAA-TAAGGCTTTCGAAGGCATAAGTGACTATAAATGAACTTTTCTCATCAGTGG
1 TTAAAGCGAGTAACT-AGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGG
* * * * * * * * * * *
15066360 ATGGCTTTTGCTTCATGTTTCCTAATCCAAGCATCCAACTATGATATGTTGTAACAAAAAATAAA
65 ATGGCTTTCGCTTCATGTTTCCCAATGCAAACAACAAATTATGATCTGTTTTAACCAAAAAT-GA
* * * *
15066425 AAAAAAATTAAATTTAAAATTATTTATAA-AGTTATAAAATCAC
129 AAAAAAATTCAATTTAAAATCATTTATAAGA-TTATAAAACCAT
* * * * * *
15066468 TTAAAGCGAGTAACAAGACTTTCAAAGGCATGAGTGACCATAAATAGACTTTTCTTATTAATGGA
1 TTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGA
* * * *
15066533 TAGCTTTTGCTTCATGTTTCCCAATGCAAACATCAAATTATCG-TATGTTTTAACCAAAAA
66 TGGCTTTCGCTTCATGTTTCCCAATGCAAACAACAAATTAT-GATCTGTTTTAACCAAAAA
15066593 CAACAACCAT
Statistics
Matches: 921, Mismatches: 200, Indels: 58
0.78 0.17 0.05
Matches are distributed among these distances:
168 2 0.00
169 62 0.07
170 330 0.36
171 124 0.13
172 355 0.39
173 46 0.05
174 2 0.00
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.33
Consensus pattern (171 bp):
TTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGA
TGGCTTTCGCTTCATGTTTCCCAATGCAAACAACAAATTATGATCTGTTTTAACCAAAAATGAAA
AAAAATTCAATTTAAAATCATTTATAAGATTATAAAACCAT
Found at i:15066739 original size:149 final size:150
Alignment explanation
Indices: 15066468--15066741 Score: 336
Period size: 149 Copynumber: 1.8 Consensus size: 150
15066458 ATAAAATCAC
* * *
15066468 TTAAAGCGAGTAACAAGACTTTCAAAGGCATGAGTGACCATAAATAGACTTTTCTTATTAATGGA
1 TTAAAGCAAGTAACAAGACTTTCAAAGGCATGAGTGACCACAAATAGACTTTTCTTATCAATGGA
** * * *
15066533 TAGCTTTTGCTTCATGTTTCCCAATGCAAACATCAAATTATCGTATGTTTTAACCAAAAACAACA
66 TAGCTTTCACTTCATGTTTCCCAATGCAAACAACAAATTATCGTATATTTCAACCAAAAACAACA
15066598 ACCATTCAATTTAAAACTAT
131 ACCATTCAATTTAAAACTAT
** * * ** * *
15066618 TTAAAGCAAGTAATTAGGCTTTCGAAGGCATGA-TGATGACAAATTGACTTTTCTTGTCAATGGA
1 TTAAAGCAAGTAACAAGACTTTCAAAGGCATGAGTGACCACAAATAGACTTTTCTTATCAATGGA
* * * * *
15066682 TGGCTTTCACTTC-TCGTTTTCCAATGCAAACAACAAATTATGGTCTATTTCAGCCAAAAA
66 TAGCTTTCACTTCAT-GTTTCCCAATGCAAACAACAAATTATCGTATATTTCAACCAAAAA
15066742 TGAAAAAAAA
Statistics
Matches: 102, Mismatches: 21, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
148 1 0.01
149 73 0.72
150 28 0.27
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.32
Consensus pattern (150 bp):
TTAAAGCAAGTAACAAGACTTTCAAAGGCATGAGTGACCACAAATAGACTTTTCTTATCAATGGA
TAGCTTTCACTTCATGTTTCCCAATGCAAACAACAAATTATCGTATATTTCAACCAAAAACAACA
ACCATTCAATTTAAAACTAT
Found at i:15067299 original size:341 final size:341
Alignment explanation
Indices: 15066609--15068283 Score: 1600
Period size: 341 Copynumber: 4.9 Consensus size: 341
15066599 CCATTCAATT
* * * **
15066609 TAAAACTATTTAAAGCAAGTAATTAGGCTTTCGAAGGCATGA-TGA-TGACAAATTG-ACTTTTC
1 TAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACT-ACAAA-TGAACTTTTC
* * * * * * * *
15066671 TTGTCAATGGATGGCTTTCACTTCTCGTTTTCC-AATGCAAACAACAAATTATGGTCT-ATTTCA
64 TTATCAATGGATGGCTTTCGCTTCACG-TTTCCTAATTCAAACAACTAATTATGATCTGTTTTTA
* * * * * * * *
15066734 GCCAAAAATGAAAAAAAAAACTCAACTTAAAATCATTTA-TAGGATTATAAAATCATTTAATG-T
128 -CCAAAAATG--AAAGAAAATTCAACTTAAAATCATTTACAAAG-TTATAAAACCACTTAAAGCA
* * * * * * * * *
15066797 GAGCAACAAGGCTTTCAAAGCCATGAGTGACTATAAATGGACTTGTC-ACGTCAATAGATGGCTG
189 GAGTAACAAGGCTTTCGAAGGCATGAGTGACTACAAATGGACTTTTCTTC-TCATTGGAT-CCT-
** * * * * *
15066861 TCACTTCATGTTTCTTGATGCAAACATCAAATTATGATTTGATTTAACAAAAAATCAAAA-AAAT
251 TTGCTTCATGTTTCTTGATGCAAACAACAAATTATGATATGTTTTAACCAAAAATGAAAACAAAT
* * * *
15066925 TCAATTTAAATTCATCTCTAAAGTAA
316 TCAATTTAAAATCATTTATAAAGTTA
* * * * * *
15066951 TAAAACCACTTAAAACTAGTAACAAGGCTTTTGAAGGGATGAGTGACTACAAAT-AGATTTTTTT
1 TAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTACAAATGA-ACTTTTCT
* * * *
15067015 TATCAATGGATGGCTTTCGCTTCACATTTCCTAATTCAAACAACTAGTTATGTTCTATTTTTACC
65 TATCAATGGATGGCTTTCGCTTCACGTTTCCTAATTCAAACAACTAATTATGATCTGTTTTTACC
* * * * *
15067080 AAAAATTAAAGAAAATTCAACTGAAAATCATTTACAAAGTTATACAATCATTTAAAGCAG-GTAA
130 AAAAATGAAAGAAAATTCAACTTAAAATCATTTACAAAGTTATAAAACCACTTAAAGCAGAGTAA
*** * * *
15067144 CAAGAAATTCGAAGGCTTGAGTGACTATAAATTGACTTTTCTTCTCATTGGATCACTGTTGCTTC
195 CAAGGCTTTCGAAGGCATGAGTGACTACAAATGGACTTTTCTTCTCATTGGATC-CT-TTGCTTC
* * * * * * *
15067209 ACGTTTCTTGGTGCAAACAACAAATTTTGATATGCTTTAACCAAAAATG-TAACAATTTAAATTT
258 ATGTTTCTTGATGCAAACAACAAATTATGATATGTTTTAACCAAAAATGAAAACAAATTCAATTT
* *
15067273 AAGATAATTTATAAAGTTA
323 AAAATCATTTATAAAGTTA
* * * * * *
15067292 TAAAACCACTTAAATCGAGCAATAAGGCTATCGAAGGCATGAGTAACTACAAATGGACTTTTCTT
1 TAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTACAAATGAACTTTTCTT
* * * * *
15067357 ATTAATGGATGGCTTTCGCTTCATGTTTCCTGATTCAAACAACTAGTAATGATCTG-TTTTACCA
66 ATCAATGGATGGCTTTCGCTTCACGTTTCCTAATTCAAACAACTAATTATGATCTGTTTTTACCA
* * *
15067421 AAAATGAAAGAAAATTCAACTTAAAATTATTTATAAAGTTATAAAACCATTTAAAGCA-AGTAAC
131 AAAATGAAAGAAAATTCAACTTAAAATCATTTACAAAGTTATAAAACCACTTAAAGCAGAGTAAC
* * * * * * *
15067485 AAGGCTTTCGAACGCTTGAGTGAGTATAAATGAACTTTTCTTCTCATTAGATGGCCTTTACTTCA
196 AAGGCTTTCGAAGGCATGAGTGACTACAAATGGACTTTTCTTCTCATTGGAT--CCTTTGCTTCA
* * * * * * *
15067550 TGTTTCTTGGTGCAAACAATAAATTTTGATATATTTTAACCTAAAATGATAACAATTTCAATTTA
259 TGTTTCTTGATGCAAACAACAAATTATGATATGTTTTAACCAAAAATGAAAACAAATTCAATTTA
* *
15067615 AAATCATTCT-TGAAGTTG
324 AAATCATT-TATAAAGTTA
* * *
15067633 TAAAATCACTTTAAGCGAGTAACAAGGCTTTCGAAAGCATGAGTGACTACAAATGAACTTTTCTT
1 TAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTACAAATGAACTTTTCTT
* * * * * * **
15067698 GTCAATGGATGGCTTTCGCTT-ATGTTTCTTAATGCAAACAA-TAAATTATGATATGTTTTAATG
66 ATCAATGGATGGCTTTCGCTTCACGTTTCCTAATTCAAACAACT-AATTATGATCTGTTTTTACC
* * * * *
15067761 AAAAATGAAAGAAAACTCAATTTAAAATCGTCT-CAAAAGTTATAAAACCACTTAAAG-TGAGTA
130 AAAAATGAAAGAAAATTCAACTTAAAATCATTTAC-AAAGTTATAAAACCACTTAAAGCAGAGTA
* *
15067824 A-ATAGGCTTTTGAAGGCATGAGTGACTACAAATGGACTTTTCTT-T-ATAATGGATGGCTTTCG
194 ACA-AGGCTTTCGAAGGCATGAGTGACTACAAATGGACTTTTCTTCTCAT--TGGAT-CCTTT-G
** * * *
15067886 CTTCATGTTTCTCAATGCAAACAATAAATTATGATCT-TTTTAACCAAAAATGAAAATAAATTCA
254 CTTCATGTTTCTTGATGCAAACAACAAATTATGATATGTTTTAACCAAAAATGAAAACAAATTCA
*
15067950 ATTTAAAATCATTTATAAATTTA
319 ATTTAAAATCATTTATAAAGTTA
* *
15067973 TAAAACCACTTAAAGCTAGTAACAAGGCTTTCGAAGGTATGAGTGACTACAAATGAACTTTTCTT
1 TAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTACAAATGAACTTTTCTT
* * * * * *
15068038 GTCAATAGATGACTTTCGCTTCACGTTTTCC-AATTCAAACAACTAAATATGATTTGTTTTTATC
66 ATCAATGGATGGCTTTCGCTTCACG-TTTCCTAATTCAAACAACTAATTATGATCTGTTTTTACC
* *
15068102 AAAAATTAAAGAAAATTCAACTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGC-GAGTAA
130 AAAAATGAAAGAAAATTCAACTTAAAATCATTTACAAAGTTATAAAACCACTTAAAGCAGAGTAA
* * * *
15068166 CAAGGCTTTCAAAGGCATGAGTGACAACAAATGGACTTTTCTTCTCATTGGATAGCTTTCGCATC
195 CAAGGCTTTCGAAGGCATGAGTGACTACAAATGGACTTTTCTTCTCATTGGAT-CCTTT-GCTTC
** *** * * * * *
15068231 ACATTTCCCAACGCAAACATCCAATTATGATCTGTTTTAACCAAGAATGAAAA
258 ATGTTTCTTGATGCAAACAACAAATTATGATATGTTTTAACCAAAAATGAAAA
15068284 AAGAATCCTG
Statistics
Matches: 1112, Mismatches: 186, Indels: 70
0.81 0.14 0.05
Matches are distributed among these distances:
339 4 0.00
340 314 0.28
341 652 0.59
342 71 0.06
343 66 0.06
344 5 0.00
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (341 bp):
TAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTACAAATGAACTTTTCTT
ATCAATGGATGGCTTTCGCTTCACGTTTCCTAATTCAAACAACTAATTATGATCTGTTTTTACCA
AAAATGAAAGAAAATTCAACTTAAAATCATTTACAAAGTTATAAAACCACTTAAAGCAGAGTAAC
AAGGCTTTCGAAGGCATGAGTGACTACAAATGGACTTTTCTTCTCATTGGATCCTTTGCTTCATG
TTTCTTGATGCAAACAACAAATTATGATATGTTTTAACCAAAAATGAAAACAAATTCAATTTAAA
ATCATTTATAAAGTTA
Found at i:15067353 original size:170 final size:171
Alignment explanation
Indices: 15066609--15068282 Score: 1486
Period size: 170 Copynumber: 9.8 Consensus size: 171
15066599 CCATTCAATT
* * * ** *
15066609 TAAAACTATTTAAAGCAAGTAATTAGGCTTTCGAAGGCATGA-TGA-TGACAAATTGACTTTTCT
1 TAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACT-ACAAATGGACTTTTCT
* * * * * * * * *
15066672 TGTCAATGGATGGCTTTCACTTC-TCGTTT-TCCAATGCAAACAACAAATTATGGTCTATTTCAG
65 TCTCATTGGATGGCTTTCGCTTCAT-GTTTCT-TAATGCAAACAACAAATTATGATATGTTTTAA
* * * *
15066735 CCAAAAATGAAAAAAAAAACTCAACTTAAAATCATTTAT-AGGATTA
128 CCAAAAATG--AAAGAAAATTCAATTTAAAATCATTTATAAAG-TTA
* * * * * * * * * *
15066781 TAAAATCATTTAATGTGAGCAACAAGGCTTTCAAAGCCATGAGTGACTATAAATGGACTTGTC-A
1 TAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTACAAATGGACTTTTCTT
* * * * * * * * *
15066845 CGTCAATAGATGGCTGTCACTTCATGTTTCTTGATGCAAACATCAAATTATGATTTGATTTAACA
66 C-TCATTGGATGGCTTTCGCTTCATGTTTCTTAATGCAAACAACAAATTATGATATGTTTTAACC
* * * * *
15066910 AAAAATCAAA-AAAATTCAATTTAAATTCATCTCTAAAGTAA
130 AAAAATGAAAGAAAATTCAATTTAAAATCATTTATAAAGTTA
* * * * * * *
15066951 TAAAACCACTTAAAACTAGTAACAAGGCTTTTGAAGGGATGAGTGACTACAAATAGATTTTTTTT
1 TAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTACAAATGGACTTTTCTT
* * ** * * * * * * * *
15067016 ATCAATGGATGGCTTTCGCTTCACATTTCCTAATTCAAACAACTAGTTATGTTCTATTTTTACCA
66 CTCATTGGATGGCTTTCGCTTCATGTTTCTTAATGCAAACAACAAATTATGATATGTTTTAACCA
* * * *
15067081 AAAATTAAAGAAAATTCAACTGAAAATCATTTACAAAGTTA
131 AAAATGAAAGAAAATTCAATTTAAAATCATTTATAAAGTTA
* * * *** * * *
15067122 TACAATCATTTAAAGC-AGGTAACAAGAAATTCGAAGGCTTGAGTGACTATAAATTGACTTTTCT
1 TAAAACCACTTAAAGCGA-GTAACAAGGCTTTCGAAGGCATGAGTGACTACAAATGGACTTTTCT
** * ** * *
15067186 TCTCATTGGATCACTGTT-GCTTCACGTTTCTTGGTGCAAACAACAAATTTTGATATGCTTTAAC
65 TCTCATTGGATGGCT-TTCGCTTCATGTTTCTTAATGCAAACAACAAATTATGATATGTTTTAAC
* * * * * *
15067250 CAAAAATGTAA-CAATTTAAATTTAAGATAATTTATAAAGTTA
129 CAAAAATGAAAGAAAATTCAATTTAAAATCATTTATAAAGTTA
* * * * *
15067292 TAAAACCACTTAAATCGAGCAATAAGGCTATCGAAGGCATGAGTAACTACAAATGGACTTTTCTT
1 TAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTACAAATGGACTTTTCTT
* * * * * * * * * *
15067357 ATTAATGGATGGCTTTCGCTTCATGTTTCCTGATTCAAACAACTAGTAATGATCTGTTTT-ACCA
66 CTCATTGGATGGCTTTCGCTTCATGTTTCTTAATGCAAACAACAAATTATGATATGTTTTAACCA
* *
15067421 AAAATGAAAGAAAATTCAACTTAAAATTATTTATAAAGTTA
131 AAAATGAAAGAAAATTCAATTTAAAATCATTTATAAAGTTA
* * * * * * *
15067462 TAAAACCATTTAAAGCAAGTAACAAGGCTTTCGAACGCTTGAGTGAGTATAAATGAACTTTTCTT
1 TAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTACAAATGGACTTTTCTT
* * ** * * *
15067527 CTCATTAGATGGCCTTT-ACTTCATGTTTCTTGGTGCAAACAATAAATTTTGATATATTTTAACC
66 CTCATTGGATGG-CTTTCGCTTCATGTTTCTTAATGCAAACAACAAATTATGATATGTTTTAACC
* * * * *
15067591 TAAAATGATAA-CAATTTCAATTTAAAATCATTCT-TGAAGTTG
130 AAAAATGA-AAGAAAATTCAATTTAAAATCATT-TATAAAGTTA
* * * *
15067633 TAAAATCACTTTAAGCGAGTAACAAGGCTTTCGAAAGCATGAGTGACTACAAATGAACTTTTCTT
1 TAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTACAAATGGACTTTTCTT
* * * **
15067698 GTCAATGGATGGCTTTCGCTT-ATGTTTCTTAATGCAAACAATAAATTATGATATGTTTTAATGA
66 CTCATTGGATGGCTTTCGCTTCATGTTTCTTAATGCAAACAACAAATTATGATATGTTTTAACCA
* * *
15067762 AAAATGAAAGAAAACTCAATTTAAAATCGTCTCA-AAAGTTA
131 AAAATGAAAGAAAATTCAATTTAAAATCAT-TTATAAAGTTA
* *
15067803 TAAAACCACTTAAAGTGAGTAA-ATAGGCTTTTGAAGGCATGAGTGACTACAAATGGACTTTTCT
1 TAAAACCACTTAAAGCGAGTAACA-AGGCTTTCGAAGGCATGAGTGACTACAAATGGACTTTTCT
* * *
15067867 T-T-ATAATGGATGGCTTTCGCTTCATGTTTCTCAATGCAAACAATAAATTATGATCT-TTTTAA
65 TCTCAT--TGGATGGCTTTCGCTTCATGTTTCTTAATGCAAACAACAAATTATGATATGTTTTAA
*
15067929 CCAAAAATGAAA-ATAAATTCAATTTAAAATCATTTATAAATTTA
128 CCAAAAATGAAAGA-AAATTCAATTTAAAATCATTTATAAAGTTA
* * *
15067973 TAAAACCACTTAAAGCTAGTAACAAGGCTTTCGAAGGTATGAGTGACTACAAATGAACTTTTCTT
1 TAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTACAAATGGACTTTTCTT
* * * * * * * * * *
15068038 GTCAATAGATGACTTTCGCTTCACGTTT-TCCAATTCAAACAACTAAA-TATGATTTGTTTTTAT
66 CTCATTGGATGGCTTTCGCTTCATGTTTCT-TAATGCAAACAAC-AAATTATGATATGTTTTAAC
* *
15068101 CAAAAATTAAAGAAAATTCAACTTAAAATCATTTATAAAGTTA
129 CAAAAATGAAAGAAAATTCAATTTAAAATCATTTATAAAGTTA
* *
15068144 TAAAACCACTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACAACAAATGGACTTTTCTT
1 TAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTACAAATGGACTTTTCTT
* * ** ** * * * *
15068209 CTCATTGGATAGCTTTCGCATCACATTTCCCAACGCAAACATCCAATTATGATCTGTTTTAACCA
66 CTCATTGGATGGCTTTCGCTTCATGTTTCTTAATGCAAACAACAAATTATGATATGTTTTAACCA
*
15068274 AGAATGAAA
131 AAAATGAAA
15068283 AAAGAATCCT
Statistics
Matches: 1197, Mismatches: 269, Indels: 73
0.78 0.17 0.05
Matches are distributed among these distances:
168 1 0.00
169 22 0.02
170 634 0.53
171 430 0.36
172 39 0.03
173 68 0.06
174 3 0.00
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (171 bp):
TAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTACAAATGGACTTTTCTT
CTCATTGGATGGCTTTCGCTTCATGTTTCTTAATGCAAACAACAAATTATGATATGTTTTAACCA
AAAATGAAAGAAAATTCAATTTAAAATCATTTATAAAGTTA
Found at i:15067785 original size:511 final size:510
Alignment explanation
Indices: 15066609--15068285 Score: 1481
Period size: 511 Copynumber: 3.3 Consensus size: 510
15066599 CCATTCAATT
* * * ** *
15066609 TAAAACTATTTAAAGCAAGTAATTAGGCTTTCGAAGGCATGA-TGA-TGACAAATTGACTTTTCT
1 TAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAAGCATGAGTGACT-ACAAA-TGACTTTTCT
* * * * * * * * * *
15066672 TGTCAATGGATGGCTTTCACTTCTCGTTT-TCCAATGCAAACAACAAATTATGGTCT-ATTTCAG
64 TCTCATTGGATAGCTTTCGCTTCACGTTTCT-TAATGCAAACAACAAATTATGATATGCTTT-AA
* * * * * * * * *
15066735 CCAAAAATGAAAAAAAAAACTCAACTTAAAATCAT-TTATAGGATTATAAAATCATTTAATGTGA
127 CCAAAAATG---AAAAAAACTAAATTTAAAATAATCTCAAAAG-TTATAAAACCACTTAAAGTGA
* * * * * * ** * * *
15066799 GCAACA-AGGCTTTCAAAGCCATGAGTGACTATAAATGGACTTGTCACGT-CAATAGATGGCTGT
188 GCAA-ATAGGCTATCGAAGGCATGAGTAACTACAAATGGACTTTTC-TTTATAATGGATGGCTTT
* ** * * *
15066862 CACTTCATGTTTCTTGATGCAAAC-ATCAAATTATGAT-TTGATTTAACAAAAAATCAAAA-AAA
251 CGCTTCATGTTTCTCAATGCAAACAAT-AAATAATGATCTT--TTTAACCAAAAATGAAAATAAA
* * * * * * * * **
15066924 TTCAATTTAAATTCATCTCTAAAGTAATAAAACCACTTAAAACTAGTAACAAGGCTTTTGAAGGG
313 TTCAACTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCAAGTAACAAGGCTTTCGAAGCT
* * * * * * * *
15066989 ATGAGTGACTACAAAT-AGATTTTTTTTATCAATGGATGGCTTTCGCTTCAC-ATTTCCTAATTC
378 ATGAGTGACTACAAATGA-ACTTTTCTTCTCAATAGATGACTTTCACTTCACGTTTTCC-AATGC
** * * * * * *
15067052 AAACAACTAGTTATGTTCTATTTTTACCAAAAATTAAAGAAAATTCAACTGAAAATCATTTACAA
441 AAACAACTAAATATGATATATTTTAACCAAAAATGAAAGAAAATTCAACTTAAAATCATTTATAA
15067117 AGTTA
506 AGTTA
* * * *** * * *
15067122 TACAATCATTTAAAGC-AGGTAACAAGAAATTCGAAGGCTTGAGTGACTATAAATTGACTTTTCT
1 TAAAACCACTTAAAGCGA-GTAACAAGGCTTTCGAAAGCATGAGTGACTACAAA-TGACTTTTCT
** *
15067186 TCTCATTGGATCA-CTGTT-GCTTCACGTTTCTTGGTGCAAACAACAAATTTTGATATGCTTTAA
64 TCTCATTGGAT-AGCT-TTCGCTTCACGTTTCTTAATGCAAACAACAAATTATGATATGCTTTAA
* * ** * *
15067249 CCAAAAATGTAACAATTTAAATTTAAGATAAT-TTATAAAGTTATAAAACCACTTAAA-TCGAGC
127 CCAAAAATGAAAAAAACTAAATTTAAAATAATCTCA-AAAGTTATAAAACCACTTAAAGT-GAGC
15067312 -AATAAGGCTATCGAAGGCATGAGTAACTACAAATGGACTTTTC-TTATTAATGGATGGCTTTCG
190 AAAT-AGGCTATCGAAGGCATGAGTAACTACAAATGGACTTTTCTTTA-TAATGGATGGCTTTCG
* * *
15067375 CTTCATGTTTC-CTGATTCAAACAACT-AGTAATGATCTGTTTT-ACCAAAAATGAAAGA-AAAT
253 CTTCATGTTTCTC-AATGCAAACAA-TAAATAATGATCT-TTTTAACCAAAAATGAAA-ATAAAT
* *
15067436 TCAACTTAAAATTATTTATAAAGTTATAAAACCATTTAAAGCAAGTAACAAGGCTTTCGAACGCT
314 TCAACTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCAAGTAACAAGGCTTTCGAA-GCT
* * * * * ***
15067501 -TGAGTGAGTATAAATGAACTTTTCTTCTCATTAGATGGCCTTT-ACTTCATG-TTTCTTGGTGC
378 ATGAGTGACTACAAATGAACTTTTCTTCTCAATAGAT-GACTTTCACTTCACGTTTTC-CAATGC
* * * * *
15067563 AAACAA-TAAATTTTGATATATTTTAACCTAAAATGATAA-CAATTTCAATTTAAAATCATTCT-
441 AAACAACTAAA-TATGATATATTTTAACCAAAAATGA-AAGAAAATTCAACTTAAAATCATT-TA
* *
15067625 TGAAGTTG
503 TAAAGTTA
* *
15067633 TAAAATCACTTTAAGCGAGTAACAAGGCTTTCGAAAGCATGAGTGACTACAAATGAACTTTTCTT
1 TAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAAGCATGAGTGACTACAAATG-ACTTTTCTT
* * * * * * **
15067698 GTCAATGGATGGCTTTCGCTT-ATGTTTCTTAATGCAAACAATAAATTATGATATGTTTTAATGA
65 CTCATTGGATAGCTTTCGCTTCACGTTTCTTAATGCAAACAACAAATTATGATATGCTTTAACCA
* ** *
15067762 AAAATGAAAGAAAACTCAATTTAAAATCGTCTCAAAAGTTATAAAACCACTTAAAGTGAGTAAAT
130 AAAATGAAA-AAAACTAAATTTAAAATAATCTCAAAAGTTATAAAACCACTTAAAGTGAGCAAAT
* * *
15067827 AGGCTTTTGAAGGCATGAGTGACTACAAATGGACTTTTCTTTATAATGGATGGCTTTCGCTTCAT
194 AGGCTATCGAAGGCATGAGTAACTACAAATGGACTTTTCTTTATAATGGATGGCTTTCGCTTCAT
* *
15067892 GTTTCTCAATGCAAACAATAAATTATGATCTTTTTAACCAAAAATGAAAATAAATTCAATTTAAA
259 GTTTCTCAATGCAAACAATAAATAATGATCTTTTTAACCAAAAATGAAAATAAATTCAACTTAAA
* * *
15067957 ATCATTTATAAATTTATAAAACCACTTAAAGCTAGTAACAAGGCTTTCGAAGGTATGAGTGACTA
324 ATCATTTATAAAGTTATAAAACCACTTAAAGCAAGTAACAAGGCTTTCGAAGCTATGAGTGACTA
* * *
15068022 CAAATGAACTTTTCTTGTCAATAGATGACTTTCGCTTCACGTTTTCCAATTCAAACAACTAAATA
389 CAAATGAACTTTTCTTCTCAATAGATGACTTTCACTTCACGTTTTCCAATGCAAACAACTAAATA
* * * * *
15068087 TGATTTGTTTTTATCAAAAATTAAAGAAAATTCAACTTAAAATCATTTATAAAGTTA
454 TGATATATTTTAACCAAAAATGAAAGAAAATTCAACTTAAAATCATTTATAAAGTTA
*
15068144 TAAAACCACTTAAAGCGAGTAACAAGGCTTTC-AAAGGCATGAGTGACAACAAATGGACTTTTCT
1 TAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAA-GCATGAGTGACTACAAAT-GACTTTTCT
* * ** * * * * *
15068208 TCTCATTGGATAGCTTTCGCATCACATTTCCCAACGCAAACATCCAATTATGATCTGTTTTAACC
64 TCTCATTGGATAGCTTTCGCTTCACGTTTCTTAATGCAAACAACAAATTATGATATGCTTTAACC
*
15068273 AAGAATGAAAAAA
129 AAAAATGAAAAAA
15068286 GAATCCTGTC
Statistics
Matches: 936, Mismatches: 179, Indels: 100
0.77 0.15 0.08
Matches are distributed among these distances:
509 2 0.00
510 81 0.09
511 671 0.72
512 75 0.08
513 33 0.04
514 67 0.07
515 7 0.01
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (510 bp):
TAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAAGCATGAGTGACTACAAATGACTTTTCTTC
TCATTGGATAGCTTTCGCTTCACGTTTCTTAATGCAAACAACAAATTATGATATGCTTTAACCAA
AAATGAAAAAAACTAAATTTAAAATAATCTCAAAAGTTATAAAACCACTTAAAGTGAGCAAATAG
GCTATCGAAGGCATGAGTAACTACAAATGGACTTTTCTTTATAATGGATGGCTTTCGCTTCATGT
TTCTCAATGCAAACAATAAATAATGATCTTTTTAACCAAAAATGAAAATAAATTCAACTTAAAAT
CATTTATAAAGTTATAAAACCACTTAAAGCAAGTAACAAGGCTTTCGAAGCTATGAGTGACTACA
AATGAACTTTTCTTCTCAATAGATGACTTTCACTTCACGTTTTCCAATGCAAACAACTAAATATG
ATATATTTTAACCAAAAATGAAAGAAAATTCAACTTAAAATCATTTATAAAGTTA
Found at i:15071101 original size:155 final size:154
Alignment explanation
Indices: 15070818--15071127 Score: 593
Period size: 155 Copynumber: 2.0 Consensus size: 154
15070808 TTTTACATTA
15070818 CAAAAATTATTTACCGATGACTCTATAAATATTGTTTTACAAGAAATTAGAATATTTTATTGAAT
1 CAAAAATTATTTACCGATGACTCTATAAATATTGTTTTACAAGAAATTAGAATATTTTATTGAAT
*
15070883 ATTTTTATTTTATTCAAATAGTTGCAATATCATTTTTAATAAATGTTTTAGACACCCAAATTTAT
66 ATTTTTATTTTATTCAAATAGTTGCAATATCATTTTTAATAAATGATTTAGACACCCAAATTTAT
*
15070948 TTTAAATCATGAAATATGTGTTTT
131 TTTAAATCATAAAATATGTGTTTT
15070972 CNAAAAATTATTTACCGATGACTCTATAAATATTGTTTTACAAGAAATTAGAATATTTTATTGAA
1 C-AAAAATTATTTACCGATGACTCTATAAATATTGTTTTACAAGAAATTAGAATATTTTATTGAA
15071037 TATTTTTATTTTATTCAAATAGTTGCAATATCATTTTTAATAAATGATTTAGACACCCAAATTTA
65 TATTTTTATTTTATTCAAATAGTTGCAATATCATTTTTAATAAATGATTTAGACACCCAAATTTA
15071102 TTTTAAATCATAAAATATGTGTTTT
130 TTTTAAATCATAAAATATGTGTTTT
15071127 C
1 C
15071128 CACTCATCTA
Statistics
Matches: 153, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
154 1 0.01
155 152 0.99
ACGTcount: A:0.38, C:0.09, G:0.08, T:0.44
Consensus pattern (154 bp):
CAAAAATTATTTACCGATGACTCTATAAATATTGTTTTACAAGAAATTAGAATATTTTATTGAAT
ATTTTTATTTTATTCAAATAGTTGCAATATCATTTTTAATAAATGATTTAGACACCCAAATTTAT
TTTAAATCATAAAATATGTGTTTT
Found at i:15073364 original size:21 final size:20
Alignment explanation
Indices: 15073329--15073369 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
15073319 TTTGGCTAGC
15073329 CATGAATTTACCAT-GAAAA
1 CATGAATTTACCATGGAAAA
15073348 CATGAAATTTAACCATGGAAAA
1 CATG-AATTT-ACCATGGAAAA
15073370 TAAGGAGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 5 0.26
21 5 0.26
22 5 0.26
ACGTcount: A:0.49, C:0.15, G:0.12, T:0.24
Consensus pattern (20 bp):
CATGAATTTACCATGGAAAA
Found at i:15074637 original size:171 final size:170
Alignment explanation
Indices: 15074340--15077134 Score: 2359
Period size: 171 Copynumber: 16.4 Consensus size: 170
15074330 GGGTCATGAG
* * * *
15074340 AAATCCAATTTAATATCATTTATAAAGTTATAAAACCACTTAAAGTGAGTAACAAGGCTTTTGAA
1 AAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAA
* * * * * * * *
15074405 GGCGTGAATGACTATATATGGGCTTTTCTTGTCAATGCATAGG-TTTTGCTTCATGTTTCCCATT
66 GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGAT-GGCTTTCGCTTCACGTTTCCCAAT
* * *
15074469 AC-AACATCCAATTATGATATGTTTTAACCAAAAATGGAAAA
130 GCAAACATCAAATTATGATCTGTTTTAACCAAAAAT-GAAAA
* *
15074510 ACAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGTGAGTAAGAAGGCTTTCGA
1 A-AATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGA
* ** **
15074575 AGGCATGAGTGACTATAAATGGACTTTTGTAATCAATGGATGGCTTTCGCTTCATATTTCCCAAT
65 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAAT
* * * *
15074640 GCAAATAACAAATTATCATCTGTTTTAACCAAAAAAGAGAAA
130 GCAAACATCAAATTATGATCTGTTTTAACCAAAAATGA-AAA
* * ** * * *
15074682 CAA-TCAATTTTTAAGCCATTTAT-AAGATTATAAAACCACTTAAAGGGAATAACTAGGCTTTCG
1 AAATTCAA-TTTAAAATCATTTATAAAG-TTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCG
* * * * *
15074745 AAGGCATG-CTGACTATAAATAGAC-TTTCTTGTCAATTGATGGCTTTCG-TTCCACATTTTCCA
64 AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTT-CACGTTTCCCA
* * * * * *
15074807 ATGCAAACAACAAATTGTGGTCTCTTTTAGCTAAAAATGAAAAA
128 ATGCAAACATCAAATTATGATCTGTTTTAACCAAAAATG-AAAA
* * * * *
15074851 AAATCTCAACTTAAAATCATTTAT-AAGATTATAAAACCATTTAAAGCGAGCAACTAGGCGTTCG
1 AAAT-TCAATTTAAAATCATTTATAAAG-TTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCG
* * * * * * ***
15074915 AAGCCATGAGTGACTATAAATAGACTTTTCATGCCAATGGATGGCTTTCGCGT-ATGTTTCTTGA
64 AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAA
* * ** *
15074979 TGCAAATAAT-AAATTCTGATCTACTTTAACGAAAAATGAAAGA
129 TGCAAA-CATCAAATTATGATCTGTTTTAACCAAAAATGAAA-A
* * * * **
15075022 AAACTCAATTTAAACT-GTCTCA-AAAGTTATAAAACCACTTAAAATGAGTAA-ATAGGCTTTCG
1 AAATTCAATTTAAAATCAT-TTATAAAGTTATAAAACCACTTAAAGCGAGTAACA-AGGCTTTCG
* * * * * *
15075084 AAGGCTTGAGTGACTACAAATGGACTTTTCTTGCCAA-CGATTGGCTTTTGCTTCACGTTTCTCA
64 AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGA-TGGCTTTCGCTTCACGTTTCCCA
* * *
15075148 ATGCAAACAACAAATTATGATGTGTTTTAATCAAAAATGAAAA
128 ATGCAAACATCAAATTATGATCTGTTTTAACCAAAAATGAAAA
* * * * * *
15075191 AAATTCAATTTAAAAACATTTGTAAATTTATAAAACAACTTAAAGAGAGTAACAAGGCTTTCAAA
1 AAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAA
** ** * *
15075256 GGCATGAGTGACTATAAATAAACTTTGGTTGTCAATGGATGGCTTTCACTTCATGTTTCCCAATG
66 GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAATG
* * * * * *
15075321 CAAATAACAAATTATCATCTATTTTAACCAAAAAAGAGAA
131 CAAACATCAAATTATGATCTGTTTTAACCAAAAATGAAAA
* * * * *
15075361 ACATTCAATTTTAAAACCATTTATAGAA-TTATAAAACCATTTAAA-CGGAGTAACTAGGCTTTT
1 AAATTCAA-TTTAAAATCATTTATA-AAGTTATAAAACCACTTAAAGC-GAGTAACAAGGCTTTC
** *
15075424 GAAGGCATGA-TGACTATAAACAGACTTTTCTTGTCAATGGATGGCTTTCG-TTCCACATTTCCC
63 GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTT-CACGTTTCCC
* * * * *
15075487 AATGCAAATAACAAATTATGGTCTCTTTTAGCCAAAAATGGAAAAAA
127 AATGCAAACATCAAATTATGATCTGTTTTAACCAAAAAT-G--AAAA
** * * * * *
15075534 AAACTT-AACCTAAAATCATTTAT-AAGATTATAAAATCATTTAAAGCGAGCAACTAGGCGTTCG
1 AAA-TTCAATTTAAAATCATTTATAAAG-TTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCG
* * * * *
15075597 AAGCCATGAGTGACTATAAATGGACTTTTCTTATTAATGGATGGCTTTTGCTT-ACGTTTCTCAA
64 AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAA
* * * *
15075661 TGCAAACAAT-AAATTATGATCTGTTATGACAAAAAATGAAAG
129 TGCAAAC-ATCAAATTATGATCTGTTTTAACCAAAAATGAAAA
* * * * *
15075703 AAA---AA-TT---GTC--TCA-AAAGTTATAAAACAACTTAAAGCAAGTAA-ATAGGCTTTCAA
1 AAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACA-AGGCTTTCGA
* * * ***
15075757 AGGCATGAGTGACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTCACTTCATGTTTCTTGAT
65 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAAT
* *
15075822 GCAAACAACAAATTATGATC-GTTTTTAACCATAAATGAAAA
130 GCAAACATCAAATTATGATCTG-TTTTAACCAAAAATGAAAA
* * * *
15075863 CAAATTCAATTTAAAACCATTTATAAATTTATAAGACCACTTAAAGCGAGTAACAAGGCTTTGGA
1 -AAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGA
* * * * * * * * ****
15075928 AGGCATAAGTGACTACAAATGAACTTTTCCTGTTAATGGATGGTTTTTGCTTCATGTTTTTTGAT
65 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAAT
* * * * * *
15075993 TCAAACAACTAGA-TATGATATGTTTTTATCAAAAATGAAAGA
130 GCAAACATC-AAATTATGATCTGTTTTAACCAAAAATGAAA-A
* * * * *
15076035 AAATACAACTTAAAATCATTTATAAAGTTATAAAACCACTTAAACCGAGTAACAAGACTTTCAAA
1 AAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAA
* * * ** * * * * *
15076100 GGCATGGGTGACAACAAATGGACTTTTCTTCCCATTGGATAGCTTTTGCATCACGTTTCCGAATG
66 GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAATG
* *** *
15076165 CAAAACATCTAATTATGATCTGTTTTAACTTTAGATGAAAA
131 C-AAACATCAAATTATGATCTGTTTTAACCAAAAATGAAAA
* * *
15076206 AACTTTTGAA-TTAAAATCATTTAT-AAGATTAT-AAACC-CGTGTAAAGCGAGTAACTAGGCTT
1 AA--ATTCAATTTAAAATCATTTATAAAG-TTATAAAACCAC-T-TAAAGCGAGTAACAAGGCTT
* * * * * * ***
15076267 TCAAAGGTATGACTGACTATAAATGAACTTTTTTTGTCAATGCACTATTTTTC-CTGTCA--TTT
61 TCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGA-TGGCTTTCGCT-TCACGTTT
*** * * * *
15076329 CCTGGTGCAAACAACAAATTATGATGTGCTTT-ACCAAAAATAAAACA
124 CCCAATGCAAACATCAAATTATGATCTGTTTTAACCAAAAATGAAA-A
* ** * * * **
15076376 AAAGTCAAGCTAAAATCATTTAT-AAGATCATAAAACCATTTAAAACGAGTAATTAGGCTTTCGA
1 AAATTCAATTTAAAATCATTTATAAAG-TTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGA
** * * *
15076440 AGGCATGAAAGACTATAAAT-AAGCATTTT-TTCTCAATGGATGGCTTTCGCCTTCACGTTTCTC
65 AGGCATGAGTGACTATAAATGGA-C-TTTTCTTGTCAATGGATGGCTTTCG-CTTCACGTTTCCC
* * *
15076503 GATGCAAATGA-CAAATTATGATCTGTTTAAACCAAAAAT-AAAA
127 AATGCAAA-CATCAAATTATGATCTGTTTTAACCAAAAATGAAAA
* * ** *
15076546 AAAATCAATTTAAAATCATTTATAAAGTAATAAAACCACTTAAAGTAAGTAACAAGGCTTTTGAA
1 AAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAA
* * * * * *
15076611 GGCATTAGTGACAATAAATGGACTCTTCTTGTCAATGGATAGCTTTCGCTTCACATTTCCTAATG
66 GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAATG
* * * * *
15076676 TAAACATCCAATTATGATATGTTTTGAA-GAAAACTGAAAAA
131 CAAACATCAAATTATGATCTGTTTT-AACCAAAAATG-AAAA
* * *
15076717 CAAATTCAGTTTAAAATCATTTGTAAAGTTACAAAACCACTTAAAGCGAGTAACAAGGCTTTCGA
1 -AAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGA
* * ** * * * * * *
15076782 AGACATTAGCCACTATAAATGGACCTTT-TTGTCAATGGATGGCTTTCGCATGATGCTTCCTAAT
65 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAAT
* * ** *
15076846 GCAAACATCAAATTATCATCTATTTTAATAAAAAATGAGAA
130 GCAAACATCAAATTATGATCTGTTTTAACCAAAAATGAAAA
* * *
15076887 ATATTCAATTTTAAAACCATTTATAAATTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGA
1 AAATTCAA-TTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGA
* *
15076952 AGGCATGAGTGACTA-AAACTGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACATTTCCCAA
65 AGGCATGAGTGACTATAAA-TGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAA
* *
15077016 TTCAAACA--AATACTTATGATCTAGTTTT-GCCAAAAATGAAAGA
129 TGCAAACATCAA-A-TTATGATCT-GTTTTAACCAAAAATGAAA-A
* * * * * **
15077059 AAATTCAACTTAAAATAATTTATAAAGTTATATAACCATTTAAAGTGAGTAATTAGGCTTTCGAA
1 AAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAA
*
15077124 GGCATGTGTGA
66 GGCATGAGTGA
15077135 GACCTCAACC
Statistics
Matches: 2107, Mismatches: 422, Indels: 191
0.77 0.16 0.07
Matches are distributed among these distances:
159 76 0.04
160 45 0.02
161 3 0.00
162 2 0.00
164 2 0.00
165 3 0.00
166 2 0.00
168 16 0.01
169 290 0.14
170 542 0.26
171 726 0.34
172 340 0.16
173 56 0.03
174 4 0.00
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.32
Consensus pattern (170 bp):
AAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAA
GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAATG
CAAACATCAAATTATGATCTGTTTTAACCAAAAATGAAAA
Found at i:15075032 original size:341 final size:339
Alignment explanation
Indices: 15074340--15077134 Score: 2181
Period size: 341 Copynumber: 8.2 Consensus size: 339
15074330 GGGTCATGAG
* * ** * *
15074340 AAATCCAATTTAATATCATTTATAA-AGTTATAAAACCACTTAAAGTGAGTAACAAGGCTTTTGA
1 AAAT-CAATTTAAAACCATTTATAAGA-TTATAAAACCACTTAAAACGAGTAACTAGGCTTTCGA
* * * * * * ** * *
15074404 AGGCGTGAATGACTATATATGGGCTTTTCTTGTCAATGCATAGG-TTTTGCTTCATGTTTCCCAT
64 AGGCATG-GTGACTATAAATGGACTTTTCTTGTCAATGGAT-GGCTTTCG-TTCACATTTTCCAA
* * * * * *
15074468 TAC-AACATCCAATTATGATATGTTTTAACCAAAAATGGAAAAACAATTCAATTTAAAATCATTT
126 TGCAAACAACAAATTATGATCTGTTTTAACTAAAAAT-GAAAAAAAATTCAATTTAAAATCATTT
* * *
15074532 ATAAAGTTATAAAACCACTTAAAGTGAGTAAGAAGGCTTTCGAAGGCATGAGTGACTATAAATGG
190 ATAAATTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGG
* ** * * * * *
15074597 ACTTTTGTAATCAATGGATGGCTTTCGCTTCATATTTCCCAATGCAAATAACAAATTATCATCTG
255 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCAAACAATAAATTATGATCTG
*
15074662 TTTTAACCAAAAAAGAGAA-A
320 TTTTAACCAAAAATGA-AAGA
* * * ** *
15074682 CAATCAATTTTTAAGCCATTTATAAGATTATAAAACCACTTAAAGGGAATAACTAGGCTTTCGAA
1 AAATCAA-TTTAAAACCATTTATAAGATTATAAAACCACTTAAAACGAGTAACTAGGCTTTCGAA
* * *
15074747 GGCATGCTGACTATAAATAGAC-TTTCTTGTCAATTGATGGCTTTCGTTCCACATTTTCCAATGC
65 GGCATGGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGTT-CACATTTTCCAATGC
* * * * *
15074811 AAACAACAAATTGTGGTCTCTTTTAGCTAAAAATGAAAAAAAATCTCAACTTAAAATCATTTATA
129 AAACAACAAATTATGATCTGTTTTAACTAAAAATGAAAAAAAAT-TCAATTTAAAATCATTTATA
* * * * * *
15074876 AGA-TTATAAAACCATTTAAAGCGAGCAACTAGGCGTTCGAAGCCATGAGTGACTATAAATAGAC
193 A-ATTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGAC
* * * * * * * **
15074940 TTTTCATGCCAATGGATGGCTTTCGCGT-ATGTTTCTTGATGCAAATAATAAATTCTGATCTACT
257 TTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCAAACAATAAATTATGATCTGTT
*
15075004 TTAACGAAAAATGAAAGA
322 TTAACCAAAAATGAAAGA
** * * * *
15075022 AAACTCAATTT-AAACTGTCTCAAAAG-TTATAAAACCACTTAAAATGAGTAAATAGGCTTTCGA
1 AAA-TCAATTTAAAACCAT-TTATAAGATTATAAAACCACTTAAAACGAGTAACTAGGCTTTCGA
* * * * * *
15075085 AGGCTTGAGTGACTACAAATGGACTTTTCTTGCCAA-CGATTGGCTTTTGCTTCAC-GTTTCTCA
64 AGGCATG-GTGACTATAAATGGACTTTTCTTGTCAATGGA-TGGCTTTCG-TTCACATTTTC-CA
* *
15075148 ATGCAAACAACAAATTATGATGTGTTTTAA-TCAAAAATG-AAAAAAATTCAATTTAAAAACATT
125 ATGCAAACAACAAATTATGATCTGTTTTAACT-AAAAATGAAAAAAAATTCAATTTAAAATCATT
* * * * *
15075211 TGTAAATTTATAAAACAACTTAAAGAGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATA
189 TATAAATTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATG
* ** * * * * *
15075276 AACTTTGGTTGTCAATGGATGGCTTTCACTTCATGTTTCCCAATGCAAATAACAAATTATCATCT
254 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCAAACAATAAATTATGATCT
* *
15075341 ATTTTAACCAAAAA--AGAGA
319 GTTTTAACCAAAAATGAAAGA
*
15075360 AACATTCAATTTTAAAACCATTTAT-AGAATTATAAAACCA-TTTAAACGGAGTAACTAGGCTTT
1 AA-A-TCAA-TTTAAAACCATTTATAAG-ATTATAAAACCACTTAAAAC-GAGTAACTAGGCTTT
* * ** *
15075423 TGAAGGCATGATGACTATAAACAGACTTTTCTTGTCAATGGATGGCTTTCGTTCCACATTTCCCA
61 CGAAGGCATGGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGTT-CACATTTTCCA
* * * * * **
15075488 ATGCAAATAACAAATTATGGTCTCTTTTAGCCAAAAATGGAAAAAAAAACTT-AACCTAAAATCA
125 ATGCAAACAACAAATTATGATCTGTTTTAACTAAAAAT-G-AAAAAAAA-TTCAATTTAAAATCA
* * * * * *
15075552 TTTATAAGA-TTATAAAATCATTTAAAGCGAGCAACTAGGCGTTCGAAGCCATGAGTGACTATAA
187 TTTATAA-ATTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAA
* * * *
15075616 ATGGACTTTTCTTATTAATGGATGGCTTTTGCTT-ACGTTT-CTCAATGCAAACAATAAATTATG
251 ATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCT-AATGCAAACAATAAATTATG
* * *
15075679 ATCTGTTATGACAAAAAATGAAAG-
315 ATCTGTTTTAACCAAAAATGAAAGA
* * * * *
15075703 AAA--AATTGT----CTCA---A-AAG-TTATAAAACAACTTAAAGCAAGTAAATAGGCTTTCAA
1 AAATCAATT-TAAAAC-CATTTATAAGATTATAAAACCACTTAAAACGAGTAACTAGGCTTTCGA
* * **
15075757 AGGCATGAGTGACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTCACTT--CATGTTTCTTG
64 AGGCATG-GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTC-GTTCACAT-TTTC-CA
* * * *
15075820 ATGCAAACAACAAATTATGATC-GTTTTTAACCATAAATGAAAACAAATTCAATTTAAAACCATT
125 ATGCAAACAACAAATTATGATCTG-TTTTAACTAAAAATGAAAAAAAATTCAATTTAAAATCATT
* * * *
15075884 TATAAATTTATAAGACCACTTAAAGCGAGTAACAAGGCTTTGGAAGGCATAAGTGACTACAAATG
189 TATAAATTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATG
* * * * * ** * * * *
15075949 AACTTTTCCTGTTAATGGATGGTTTTTGCTTCATGTTTTTTGATTCAAACAACTAGA-TATGATA
254 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCAAACAA-TAAATTATGATC
* *
15076013 TGTTTTTATCAAAAATGAAAGA
318 TGTTTTAACCAAAAATGAAAGA
* * * * * *
15076035 AAATACAACTTAAAATCATTTATAA-AGTTATAAAACCACTTAAACCGAGTAACAAGACTTTCAA
1 AAAT-CAATTTAAAACCATTTATAAGA-TTATAAAACCACTTAAAACGAGTAACTAGGCTTTCGA
* * ** * * * * *
15076099 AGGCATGGGTGACAACAAATGGACTTTTCTTCCCATTGGATAGCTTTTGCATCAC-GTTTCCGAA
64 AGGCAT-GGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCG-TTCACATTTTCC-AA
* * ** * ** *
15076163 TGCAAAACATCTAATTATGATCTGTTTTAACTTTAGATGAAAAAACTTTTGAA-TTAAAATCATT
126 TGC-AAACAACAAATTATGATCTGTTTTAACTAAAAATGAAAAAA-AATTCAATTTAAAATCATT
* * * *
15076227 TATAAGA-TTAT-AAACC-CGTGTAAAGCGAGTAACTAGGCTTTCAAAGGTATGACTGACTATAA
189 TATAA-ATTTATAAAACCAC-T-TAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAA
* * * *** ** *
15076289 ATGAACTTTTTTTGTCAATGCACTATTTTTC-CTGTCA--TTTCCTGGTGCAAACAACAAATTAT
251 ATGGACTTTTCTTGTCAATGGA-TGGCTTTCGCT-TCATGTTTCCTAATGCAAACAATAAATTAT
* * * *
15076351 GATGTGCTTT-ACCAAAAATAAAACA
314 GATCTGTTTTAACCAAAAATGAAAGA
** * * * *
15076376 AAAGTCAAGCTAAAATCATTTATAAGATCATAAAACCATTTAAAACGAGTAATTAGGCTTTCGAA
1 AAA-TCAATTTAAAACCATTTATAAGATTATAAAACCACTTAAAACGAGTAACTAGGCTTTCGAA
** * * *
15076441 GGCATGAAAGACTATAAAT-AAGCATTTT-TTCTCAATGGATGGCTTTCGCCTTCAC-GTTTCTC
65 GGCATG-GTGACTATAAATGGA-C-TTTTCTTGTCAATGGATGGCTTTCG--TTCACATTTTC-C
* ** * *
15076503 GATGCAAATGACAAATTATGATCTGTTTAAACCAAAAAT-AAAAAAAA-TCAATTTAAAATCATT
124 AATGCAAACAACAAATTATGATCTGTTTTAACTAAAAATGAAAAAAAATTCAATTTAAAATCATT
* * ** * * *
15076566 TATAAAGTAATAAAACCACTTAAAGTAAGTAACAAGGCTTTTGAAGGCATTAGTGACAATAAATG
189 TATAAATTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATG
* * ** * * *
15076631 GACTCTTCTTGTCAATGGATAGCTTTCGCTTCACATTTCCTAATGTAAAC-ATCCAATTATGATA
254 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCAAACAAT-AAATTATGATC
* * *
15076695 TGTTTTGAA-GAAAACTGAAAAA
318 TGTTTT-AACCAAAAATGAAAGA
* * * * * *
15076717 CAAATTCAGTTTAAAATCATTTGTAA-AGTTACAAAACCACTTAAAGCGAGTAACAAGGCTTTCG
1 -AAA-TCAATTTAAAACCATTTATAAGA-TTATAAAACCACTTAAAACGAGTAACTAGGCTTTCG
* * ** * * *
15076781 AAGACATTAGCCACTATAAATGGACCTTT-TTGTCAATGGATGGCTTTCG--CATGATGCTTCCT
63 AAGGCA-TGGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGTTCA-CAT-TTTCC-
* * * * * *
15076843 AATGCAAACATCAAATTATCATCTATTTTAA-TAAAAAATG-AGAAATATTCAATTTTAAAACCA
124 AATGCAAACAACAAATTATGATCTGTTTTAACT-AAAAATGAAAAAAAATTCAA-TTTAAAATCA
15076906 TTTATAAATTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTA-AAA
187 TTTATAAATTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAA
* ** * * *
15076970 CTGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACATTTCCCAATTCAAACAA-ATACTTATG
252 -TGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCAAACAATA-AATTATG
*
15077034 ATCTAGTTTT-GCCAAAAATGAAAGA
315 ATCT-GTTTTAACCAAAAATGAAAGA
* ** * * ** *
15077059 AAATTCAACTTAAAATAATTTATAA-AGTTATATAACCATTTAAAGTGAGTAATTAGGCTTTCGA
1 AAA-TCAATTTAAAACCATTTATAAGA-TTATAAAACCACTTAAAACGAGTAACTAGGCTTTCGA
15077123 AGGCATGTGTGA
64 AGGCATG-GTGA
15077135 GACCTCAACC
Statistics
Matches: 1948, Mismatches: 392, Indels: 227
0.76 0.15 0.09
Matches are distributed among these distances:
329 3 0.00
330 101 0.05
331 72 0.04
332 80 0.04
333 5 0.00
334 1 0.00
335 4 0.00
336 2 0.00
337 4 0.00
338 22 0.01
339 227 0.12
340 311 0.16
341 463 0.24
342 418 0.21
343 214 0.11
344 21 0.01
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.32
Consensus pattern (339 bp):
AAATCAATTTAAAACCATTTATAAGATTATAAAACCACTTAAAACGAGTAACTAGGCTTTCGAAG
GCATGGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGTTCACATTTTCCAATGCAA
ACAACAAATTATGATCTGTTTTAACTAAAAATGAAAAAAAATTCAATTTAAAATCATTTATAAAT
TTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTT
CTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCAAACAATAAATTATGATCTGTTTTAA
CCAAAAATGAAAGA
Found at i:15077758 original size:151 final size:150
Alignment explanation
Indices: 15077458--15077759 Score: 532
Period size: 151 Copynumber: 2.0 Consensus size: 150
15077448 AAGATTAAAG
*
15077458 GAGAATAAGTTAATTTATGAAGGGCCTTTTGGTAATTTAAGTGGAGTGGATAAGTTTGGCTATAA
1 GAGAATAAGTTAATTTATGAAGGGCATTTTGGTAATTTAAGTGGAGTGGATAAGTTTGGCTATAA
* *
15077523 AATATCTTCTCCTTCTAGCAGCTTCTTAAATTTCCAACAACTTGTCTTCTTCTTCCATCTCACAT
66 AAAATCTTCTCCTTCCAGCAGCTTCTTAAATTTCCAACAACTTGTCTTCTTCTTCCATCTCACAT
15077588 TGCTTCCAACCTCCATGGAA
131 TGCTTCCAACCTCCATGGAA
* *
15077608 GAGAATAAGTTAATTTGTGGAGGGGCATTTTGGTAATTTAAGTGGAGTGGATAAGTTTGGCTATA
1 GAGAATAAGTTAATTTAT-GAAGGGCATTTTGGTAATTTAAGTGGAGTGGATAAGTTTGGCTATA
* *
15077673 AAAAATCTTCTCCTTCCAGCCGCTTCTTAAATTTCCAACAACTTGTCTTCTTCTTCCATCTCACG
65 AAAAATCTTCTCCTTCCAGCAGCTTCTTAAATTTCCAACAACTTGTCTTCTTCTTCCATCTCACA
15077738 TTGCTTCCAACCTCCATGGAA
130 TTGCTTCCAACCTCCATGGAA
15077759 G
1 G
15077760 CTTGATATGG
Statistics
Matches: 144, Mismatches: 7, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
150 17 0.12
151 127 0.88
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (150 bp):
GAGAATAAGTTAATTTATGAAGGGCATTTTGGTAATTTAAGTGGAGTGGATAAGTTTGGCTATAA
AAAATCTTCTCCTTCCAGCAGCTTCTTAAATTTCCAACAACTTGTCTTCTTCTTCCATCTCACAT
TGCTTCCAACCTCCATGGAA
Found at i:15078585 original size:43 final size:43
Alignment explanation
Indices: 15078515--15078596 Score: 101
Period size: 43 Copynumber: 1.9 Consensus size: 43
15078505 AGGGAGTGCA
* * **
15078515 CATAAGCCGAGGATGACCCGGTTATGTGCGAGTAAGGAGCGTG
1 CATAACCCGAGGATGACCCAGCCATGTGCGAGTAAGGAGCGTG
* * *
15078558 CATAACCCGATGATGACCCAGCCATGTGCTAGTAGGGAG
1 CATAACCCGAGGATGACCCAGCCATGTGCGAGTAAGGAG
15078597 TGCGCATGAG
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 32 1.00
ACGTcount: A:0.27, C:0.22, G:0.33, T:0.18
Consensus pattern (43 bp):
CATAACCCGAGGATGACCCAGCCATGTGCGAGTAAGGAGCGTG
Found at i:15078640 original size:23 final size:23
Alignment explanation
Indices: 15078613--15078663 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
15078603 TGAGCTGGTG
* * * *
15078613 ATGATAATGATGTGATGGTGTGT
1 ATGATAATGAAGGGATGATGTGC
*
15078636 ATGATGATGAAGGGATGATGTGC
1 ATGATAATGAAGGGATGATGTGC
15078659 ATGAT
1 ATGAT
15078664 GTTGATGGGT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.29, C:0.02, G:0.35, T:0.33
Consensus pattern (23 bp):
ATGATAATGAAGGGATGATGTGC
Found at i:15080196 original size:171 final size:170
Alignment explanation
Indices: 15079895--15081860 Score: 1606
Period size: 171 Copynumber: 11.5 Consensus size: 170
15079885 GGTCGTGCAA
* * * * * * *
15079895 GCATGAGTGACTATAAGTGG-CTTTTCTTCTCATTGAATGGCTTTTGCTTCATGTATCTCGATGT
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGATGC
* * * * * * *
15079959 AGACAACAAATTATGATTTGCTTTTACAAAAAATAAAAAAAAAATTCAATTTAAAATCATTTATA
66 AAACAACAAATTATGATCTGTTTTTAC-CAAAAT-GAAAGAAAATTCAACTTAAAATCATTTATA
* * *
15080024 AAGTTATAAAACCACTTAAAGCGAGCAACAAGGGTTTTGAAG
129 AAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAG
* * * *
15080066 GCATGAGTGACTACAAATGGACTTTT-TGTGTCAACGGGTGACTTTCGCTTCATGTTTC-CTGAT
1 GCATGAGTGACTATAAATGGACTTTTCT-TGTCAATGGATGGCTTTCGCTTCATGTTTCTC-GAT
* * * * * * *
15080129 TCAAAGAACTAGTAATGATCTGTTTTTACCAAGAATTAAAGAAAATTCAACTAAAAATCATTTAT
64 GCAAACAACAAATTATGATCTGTTTTTACCAA-AATGAAAGAAAATTCAACTTAAAATCATTTAT
* * *
15080194 AAAGTTATAAAACCACATAAAGCGAGTAATAAGGCTTCCGAAG
128 AAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAG
** * * *
15080237 GCATGAGTGACTATAAATAAACTTTTGTTTTCAATGGATGGCTTTCACTTCATGTTTC-CTGATG
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTC-GATG
* * * * * * *
15080301 CAAATAACAAATTATCATCTGTTTTAACCAAAA--AATAGAAACACTCAATTTTCAAAGCATTTA
65 CAAACAACAAATTATGATCTGTTTTTACCAAAATGAA-AGAAA-ATTCAA-CTTAAAATCATTTA
* * * * *
15080364 T-AGGATTATAAAACCATTTAAAGGGAGTATCTAGGCTTTCGAAG
127 TAAAG-TTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAG
* * ** ** *
15080408 GTATG-TTGACTATAAACAGACTTTTCTTGTCAATGGATGGCTTTCG-TTCCACATTT-TGCAAT
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTT-CATGTTTCT-CGAT
* * ** *
15080470 GCAAACAAAAAATTATGGTC-ACTTTTAGCCAAAAATGAAAAAAAATCTCAACTTAAAATCATTT
64 GCAAACAACAAATTATGATCTGTTTTTA-CC-AAAATGAAAGAAAAT-TCAACTTAAAATCATTT
* * *
15080534 AT-AAGATTATAAAACCATTTAAAGCGAGCAACTAGG-TGTTCGAAG
126 ATAAAG-TTATAAAACCACTTAAAGCGAGTAACAAGGCT-TTCGAAG
* *
15080579 CCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTT-ATGTTTCTCGATGC
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGATGC
* * * * **
15080643 AAACAAGAAATTATGATCTG-TTTTACTGAAGAATGAAAGAAAACTCAATTTAAAATCGCCTTA-
66 AAACAACAAATTATGATCTGTTTTTAC-CAA-AATGAAAGAAAATTCAACTTAAAATC-ATTTAT
*
15080706 AAAGTTATAAAACAACTTAAAGCGAGTAA-ATAGGCTTTCGAAG
128 AAAGTTATAAAACCACTTAAAGCGAGTAACA-AGGCTTTCGAAG
* * *
15080749 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTCCATGC
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGATGC
* * * *
15080814 AAACAACAAATTATGAT-TTTTTTTAACCAAAAATGATAA-CAAATTCAAGTTAAAACCATTTAT
66 AAACAACAAATTATGATCTGTTTTT-ACC-AAAATGA-AAGAAAATTCAACTTAAAATCATTTAT
* * *
15080877 AAATTTATAAAACCACTTAAAGTGAGTAACACGGCTTTCGAAG
128 AAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAG
* * * * * * *
15080920 GTATGAGTGACTACAAATGAACTTTTCTTGTCAATGGATGACTTTCGCTTCACGTTTTTCGATTC
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGATGC
* * ** * *
15080985 AAACAACTAGA-TATGATTTGTTTTTGTCAAAGATGATAGAAAAGTCAACTTAAAATCATTTATA
66 AAACAAC-AAATTATGATCTGTTTTTACCAAA-ATGAAAGAAAATTCAACTTAAAATCATTTATA
* ** *
15081049 AAGTTATAAAACTACTTAAAGTAAGTAACAAGGCTTTTGAAG
129 AAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAG
* * * * *** * * *
15081091 GCATGAGTGACAATAAATGGACTTTTCTTCTCATTGGATAGCTTTCAAATCAAGTTTCGCAATGC
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGATGC
* * * ** * ** *
15081156 AAACATCCAATTATGATCTGTTTTAACTTGAGATGAAA-AACTTTTGAA-TTAAAATCATTTAT-
66 AAACAACAAATTATGATCTGTTTTTAC-CAAAATGAAAGAA-AATTCAACTTAAAATCATTTATA
* * * *
15081218 AAGATT-TTAAACC-CGTGTAAAGCGAGTAACTAGACTTTCAAAG
129 AAG-TTATAAAACCAC-T-TAAAGCGAGTAACAAGGCTTTCGAAG
* * * * * * *
15081261 GCATGATTGACTATAAATGGACTTTTCTTGGCAATGCATGG-TTTTGCCTT-ACGTTTCTTGGTG
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCG-CTTCATGTTTCTCGATG
* * * * * * *
15081324 CAAACAACAAATTATGATATGCTTTAACAAAAAATAAAACAAAATTCAAGTTAAAATCATTTAT-
65 CAAACAACAAATTATGATCTGTTTTTAC-CAAAATGAAAGAAAATTCAACTTAAAATCATTTATA
* *
15081388 AAGATTATAAAACCATTTAAAGTCG-GTAACTAGGCTTTCGAAG
129 AAG-TTATAAAACCACTTAAAG-CGAGTAACAAGGCTTTCGAAG
** * * * * *
15081431 GCATGAAAGACTATAAAT-GAGCATTTCTTCTCAATGGATAGCTTTCGCTTCACGTTTCTTGATG
1 GCATGAGTGACTATAAATGGA-CTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGATG
** * * * * * * *
15081495 CAAATGACAAATTATGATCT-ATTTAAGCAAAA-AACAAAAAAAATCAATTTAAAATCATTTATA
65 CAAACAACAAATTATGATCTGTTTTTACCAAAATGA-AAGAAAATTCAACTTAAAATCATTTATA
* * *
15081558 AAGTAATAAAACCACTTAAAGCAAGTAACAAGGCTTTTGAAG
129 AAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAG
* * * * * *
15081600 GTATTAGTGACTATAAATGGACTCTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTC-CTAATT
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTC-GATG
* * * * * * * ** *
15081664 TAAACATCCAATTATGATATGTTTTAACCAAAAATGAAAAAAAAAATCAGTTTAAAATCATTTGT
65 CAAACAACAAATTATGATCTGTTTTTACC-AAAATG-AAAGAAAATTCAACTTAAAATCATTTAT
* * * **
15081729 AAAGTTATAAGACAACTTAAAGTGAGTAACAAAACTTTCGAA-
128 AAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAG
* * * * * * * * *
15081771 GCAATTAGTCACTATAAATAGACTTTTTTTGTCAATGGATGGCTTTCGCATGATGCTTCCCAATG
1 GC-ATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGATG
** * *
15081836 CAAACATGAAATTATCATCTATTTT
65 CAAACAACAAATTATGATCTGTTTT
15081861 AACAAAAAAA
Statistics
Matches: 1444, Mismatches: 286, Indels: 129
0.78 0.15 0.07
Matches are distributed among these distances:
168 6 0.00
169 190 0.13
170 339 0.23
171 658 0.46
172 245 0.17
173 6 0.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (170 bp):
GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCGATGC
AAACAACAAATTATGATCTGTTTTTACCAAAATGAAAGAAAATTCAACTTAAAATCATTTATAAA
GTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAG
Found at i:15080940 original size:341 final size:339
Alignment explanation
Indices: 15079895--15094953 Score: 10834
Period size: 342 Copynumber: 44.3 Consensus size: 339
15079885 GGTCGTGCAA
* * * * * * * *
15079895 GCATGAGTGACTATAAGTGG-CTTTTCTTCTCATTGAATGGCTTTTGCTTCATGTATCTCGATGT
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGC
* * * * *
15079959 AGACAACAAATTATGATTTGCTTTTACAAAAAATAAAAAAAAAATTCAATTTAAAATCATTTATA
66 AAACAACAAATTATGATCTG-TTTTACCAAAAAT-GAAAGAAAATTCAATTTAAAATCATTTATA
* * * * *
15080024 AAGTTATAAAACCACTTAAAGCGAGCAACAAGGGTTTTGAAGGCATGAGTGACTACAAATGGACT
129 AAGTTATAAAACCATTTAAAGCGAGTAA-AAGGCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * * * * * * *
15080089 TTT-TGTGTCAACGGGTGACTTTCGCTTCATGTTTC-CTGATTCAAAGAACTAGTAATGATCTGT
193 TTTCT-TGTCAATGGATGGCTTTCGCTTCACGTTTCTC-GATGCAAACAACAAATTATGATCTGT
* * * * * *
15080152 TTTTACCAAGAATTAAAGAAAATTCAACTAAAAATCATTTATAAAGTTATAAAACCACATAAAGC
256 TTTAACCAAAAATGAAA-AAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGC
* *
15080217 GAGTAATAAGGCTTCCGAAG
320 GAGTAACAAGGCTTTCGAAG
** * * * *
15080237 GCATGAGTGACTATAAATAAACTTTTGTTTTCAATGGATGGCTTTCACTTCATGTTTC-CTGATG
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-GATG
* * * * * *
15080301 CAAATAACAAATTATCATCTGTTTTAACCAAAAA--ATAGAAACACTCAATTTTCAAAGCATTTA
65 CAAACAACAAATTATGATCTGTTTT-ACCAAAAATGAAAGAAA-ATTCAA-TTTAAAATCATTTA
* * ** * * **
15080364 T-AGGATTATAAAACCATTTAAAGGGAGTATCTAGGCTTTCGAAGGTATG-TTGACTATAAACAG
127 TAAAG-TTATAAAACCATTTAAAGCGAGTA-AAAGGCTTTCGAAGGCATGAGTGACTATAAATGG
* * * *
15080427 ACTTTTCTTGTCAATGGATGGCTTTCG-TTCCACATTT-TGCAATGCAAACAAAAAATTATGGTC
190 ACTTTTCTTGTCAATGGATGGCTTTCGCTT-CACGTTTCT-CGATGCAAACAACAAATTATGATC
** * * *
15080490 ACTTTTAGCCAAAAATGAAAAAAAATCTCAACTTAAAATCATTTAT-AAGATTATAAAACCATTT
253 TGTTTTAACCAAAAATG-AAAAAAAT-TCAATTTAAAATCATTTATAAAG-TTATAAAACCACTT
* *
15080554 AAAGCGAGCAACTAGG-TGTTCGAAG
315 AAAGCGAGTAACAAGGCT-TTCGAAG
* * *
15080579 CCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTT-ATGTTTCTCGATGC
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGC
* * * * **
15080643 AAACAAGAAATTATGATCTGTTTTACTGAAGAATGAAAGAAAACTCAATTTAAAATCGCCTTA-A
66 AAACAACAAATTATGATCTGTTTTAC-CAAAAATGAAAGAAAATTCAATTTAAAATC-ATTTATA
* *
15080707 AAGTTATAAAACAACTTAAAGCGAGTAAATAGGCTTTCGAAGGCATGAGTGACTATAAATGGACT
129 AAGTTATAAAACCATTTAAAGCGAGTAAA-AGGCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * *
15080772 TTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTCCATGCAAACAACAAATTATGATTTTTTT
193 TTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACAACAAATTATGATCTGTTT
* * * * *
15080837 TAACCAAAAATGATAACAAATTCAAGTTAAAACCATTTATAAATTTATAAAACCACTTAAAGTGA
258 TAACCAAAAATGA-AAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGA
*
15080902 GTAACACGGCTTTCGAAG
322 GTAACAAGGCTTTCGAAG
* * * * * *
15080920 GTATGAGTGACTACAAATGAACTTTTCTTGTCAATGGATGACTTTCGCTTCACGTTTTTCGATTC
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGC
* * ** * * * *
15080985 AAACAACTAGA-TATGATTTGTTTTTGTCAAAGATGATAGAAAAGTCAACTTAAAATCATTTATA
66 AAACAAC-AAATTATGATCTG-TTTTACCAAAAATGAAAGAAAATTCAATTTAAAATCATTTATA
* * ** * *
15081049 AAGTTATAAAACTACTTAAAGTAAGTAACAAGGCTTTTGAAGGCATGAGTGACAATAAATGGACT
129 AAGTTATAAAACCATTTAAAGCGAGTAA-AAGGCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * *** * * * * *
15081114 TTTCTTCTCATTGGATAGCTTTCAAATCAAGTTTCGCAATGCAAACATCCAATTATGATCTGTTT
193 TTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACAACAAATTATGATCTGTTT
*** * ** * *
15081179 TAACTTGAGATGAAAAACTTTTGAA-TTAAAATCATTTAT-AAGATT-TTAAACC-CGTGTAAAG
258 TAACCAAAAATGAAAAA-AATTCAATTTAAAATCATTTATAAAG-TTATAAAACCAC-T-TAAAG
* * *
15081240 CGAGTAACTAGACTTTCAAAG
319 CGAGTAACAAGGCTTTCGAAG
* * * * * *
15081261 GCATGATTGACTATAAATGGACTTTTCTTGGCAATGCATGG-TTTTGCCTT-ACGTTTCTTGGTG
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCG-CTTCACGTTTCTCGATG
* * * * * *
15081324 CAAACAACAAATTATGATATGCTTTAACAAAAAATAAAACAAAATTCAAGTTAAAATCATTTAT-
65 CAAACAACAAATTATGATCTG-TTTTACCAAAAATGAAAGAAAATTCAATTTAAAATCATTTATA
* **
15081388 AAGATTATAAAACCATTTAAAGTCG-GTAACTAGGCTTTCGAAGGCATGAAAGACTATAAAT-GA
129 AAG-TTATAAAACCATTTAAAG-CGAGTAA-AAGGCTTTCGAAGGCATGAGTGACTATAAATGGA
* * * * **
15081451 GCATTTCTTCTCAATGGATAGCTTTCGCTTCACGTTTCTTGATGCAAATGACAAATTATGATCT-
191 -CTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACAACAAATTATGATCTG
* * ** * *
15081515 ATTTAAGCAAAAAACAAAAAAAATCAATTTAAAATCATTTATAAAGTAATAAAACCACTTAAAGC
255 TTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGC
* *
15081580 AAGTAACAAGGCTTTTGAAG
320 GAGTAACAAGGCTTTCGAAG
* * * * *
15081600 GTATTAGTGACTATAAATGGACTCTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTC-CTAATT
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-GATG
* * * * * * * *
15081664 TAAACATCCAATTATGATATGTTTTAACCAAAAATGAAAAAAAAAATCAGTTTAAAATCATTTGT
65 CAAACAACAAATTATGATCTGTTTT-ACCAAAAATG-AAAGAAAATTCAATTTAAAATCATTTAT
* * * * ** * * *
15081729 AAAGTTATAAGACAACTTAAAGTGAGTAACAAAACTTTCGAA-GCAATTAGTCACTATAAATAGA
128 AAAGTTATAAAACCATTTAAAGCGAGTAA-AAGGCTTTCGAAGGC-ATGAGTGACTATAAATGGA
* * * * * * * ** * *
15081793 CTTTTTTTGTCAATGGATGGCTTTCGCATGATGCTTCCCAATGCAAACATGAAATTATCATCTAT
191 CTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACAACAAATTATGATCTGT
* * * * *
15081858 TTTAA-C----A--AAAAAAA-T-GA---GAAAT-A--T-T-GAGTTTTAAAACCACTTAAAGTG
256 TTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCG
*
15081906 AGTAATAAGGCTTTCGAAG
321 AGTAACAAGGCTTTCGAAG
* * * * * * *
15081925 GCATGAGTGACTACAAATAGACTTTTCTTATCAATGGATGGCTTTTGCTTCATGTTTCCCGATTC
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGC
* * ** * *
15081990 AAACAACTAGTTATGATCAACTTTTACCAAAAATGAAACAAAATTCAACTTAAAATCATTTATAA
66 AAACAACAAATTATGATC-TGTTTTACCAAAAATGAAAGAAAATTCAATTTAAAATCATTTATAA
* * * * * *
15082055 AGTTATAAAACTATTTAAAGTGAGTAACAAGGTTTTTGAAGCCATGAGTGACTATAAGTGGACTT
130 AGTTATAAAACCATTTAAAGCGAGTAA-AAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * * ** * * *
15082120 TTCTTCTCATTGGATGGCTTTCGTTTCACGTCCCTCGATGTAGACAACAAATTATGATTTGTTTT
194 TTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACAACAAATTATGATCTGTTTT
* *
15082185 AACCAAAAAGGAAAAAATATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCAAG
259 AACCAAAAATGAAAAAA-ATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAG
15082250 TAACAAGGCTTTCGAAG
323 TAACAAGGCTTTCGAAG
* ** * * * *
15082267 GCATGAGTGACTACAAATGGACTTTTCTTGTCAATTAACGGCTTTCGCTTCATGTTTC-CTAATT
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-GATG
* * * * * ** * *
15082331 CAAAGAACTAGTAATGATCTATTTTTATGATAAATGAAAGAAAATTCAACTTAAAAATCATTTAT
65 CAAACAACAAATTATGATCT-GTTTTACCAAAAATGAAAGAAAATTCAA-TTTAAAATCATTTAT
* * * * *
15082396 AAAGTTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCAAAGGCATGAGTGGCAATACATGGAC
128 AAAGTTATAAAACCATTTAAAGCGAGTAA-AAGGCTTTCGAAGGCATGAGTGACTATAAATGGAC
* *
15082461 TTTTCTTCTCATTGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACAACAAATTATGATCTGTT
192 TTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACAACAAATTATGATCTGTT
* * * * * *
15082526 TTACCCAAAAATGAAAAAAAAATCGATTTAAAACCATTTATAAAGTTGTAAAACCACTTACAGCG
257 TTAACCAAAAATG-AAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCG
* * *
15082591 TGTAATAAGGGTTTCGAAG
321 AGTAACAAGGCTTTCGAAG
* * * * * * * * *
15082610 GCATGTGTGAGTACAGATGAACTTTTTTTGTCAATGGATGGCTTTCACTTCATGTTTCTCGATTC
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGC
* *** * * ** *
15082675 AAACAGCTTGTTATGATCTATTTTTACAAAAAATGAAAGAAAATTCAACTGAAAAATCATTAATA
66 AAACAACAAATTATGATCT-GTTTTACCAAAAATGAAAGAAAATTCAA-TTTAAAATCATTTATA
* * * * *
15082740 AAGCTATAAAACCATTT-TAGCGAGTAACAAGGCTTTCCAAGGCATGAGTGACTGTAAATGGACG
129 AAGTTATAAAACCATTTAAAGCGAGTAA-AAGGCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * * * * *
15082804 TTTCTCGTCAATGGATGGGTTTTGGTTCACGTTTCCCGATGTAAACAACAAATTATGATCTTTTT
193 TTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACAACAAATTATGATCTGTTT
* * * * *
15082869 TAATCAAAAATGAAAAACAATTCAATTTAAAGTTATTTTTAAAGTCATAAAACCACTTAAAGCGA
258 TAACCAAAAATGAAAAA-AATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGA
*
15082934 GTAACAAGACTTTCGAAG
322 GTAACAAGGCTTTCGAAG
* * * * * * * * * *
15082952 GCATGAGTGATTATAAATGAAC-GTTGTTGTCAATGGAGGGCTTTCACTTGATGTTTTTCGGTGC
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGC
* * * *
15083016 AAACATCAAATTATCATAC-GTTTTAACCAAAAATG--AGAAACATTAAATTTTAAAACCATTTA
66 AAACAACAAATTATGAT-CTGTTTT-ACCAAAAATGAAAGAAA-ATTCAA-TTTAAAATCATTTA
* * ** * *
15083078 T-AGGATTATAAAACCATTTAAAAG-GAATCATTAGGCTTTCAAAGGCATG-TTGACTATAAATG
127 TAAAG-TTATAAAACCATTT-AAAGCGAGT-AAAAGGCTTTCGAAGGCATGAGTGACTATAAATG
* * * ** *
15083140 GACTTTTCTTG-CTAATGGATGGCTTTCGCTTCACGTTCCT-AATGCAAATATTAAATTATGATT
189 GACTTTTCTTGTC-AATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACAACAAATTATGATC
* * * * * *
15083203 TTTTTTGGAA-CAAAAATGAGAAAAATTCATTTTTGAAATCATTTAT-AAGATTCTAAAACTA-T
253 TGTTTT--AACCAAAAATGAAAAAAATTCA-ATTTAAAATCATTTATAAAG-TTATAAAACCACT
* * *
15083265 TGAAAGTGAGTAACAAGTCTTTCAAAG
314 T-AAAGCGAGTAACAAGGCTTTCGAAG
* * * *
15083292 GCATGAGTGACTATAAAATGGACTTTTTTTGCCAATCGATGGCTTTCGCTTCACGTTTC-CTAAT
1 GCATGAGTGACTAT-AAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-GAT
** * * * * * * *
15083356 GCAAACTTCTAATTATGATCTGTTTGAACAAAAACTGAAAAAAAAATTCAATTCAAAGTCACTTA
64 GCAAACAACAAATTATGATCTGTTTTACCAAAAA-TG-AAAGAAAATTCAATTTAAAATCATTTA
* * * * * *
15083421 TAAAGTTATAAAACCACTTAAAGTGAGTAACTAGGCTTTCAAATGCATGAGTGACTATAAATAGA
127 TAAAGTTATAAAACCATTTAAAGCGAGTAA-AAGGCTTTCGAAGGCATGAGTGACTATAAATGGA
* * * *
15083486 CTTTTCTTGTCAATGGATGGCTTTTGCCTCACGTTTC-CTGATGCAAAAAACAAATTATGATCAG
191 CTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-GATGCAAACAACAAATTATGATCTG
* * *
15083550 TTTTAACCAAAAATAAAAAAAATTTCAATTTAAAATCATTTGTAAAGTGATAAAACCACTTAATA
255 TTTTAACCAAAAATGAAAAAAA-TTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAA-A
*
15083615 -CGAGTAACAAGGCTTTCAAAG
318 GCGAGTAACAAGGCTTTCGAAG
* * * * *
15083636 GCATGAGTGACTACAAATGGAC-TTTCTTGTCAATGGATGGCTTTCGCTTCACATTTCCCAATTC
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGC
* * * * ** * *
15083700 AAACAACTAGTTATGTTCTGCTTTTACCAAAAACGAAAGGCAATTCAACTGAAAATCATTT-TCA
66 AAACAACAAATTATGATCTG-TTTTACCAAAAATGAAAGAAAATTCAATTTAAAATCATTTAT-A
* *** * * *
15083764 AAGTTATAAAATCATTTAAAGCGAGTAACAATAAATTT-GAAGGCTTGAGTGACTTTAAAGGGAC
129 AAGTTATAAAACCATTTAAAGCGAGTAA-AA-GGCTTTCGAAGGCATGAGTGACTATAAATGGAC
* * * * * * * * *
15083828 TTTTCTTCTCATTGGATGGCTTTCGCTTAACTTTTCT-TAGTGCAAACAACAAATTTTAATATGC
192 TTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGA-TGCAAACAACAAATTATGATCTGT
* * * * *
15083892 TTTAACCAAAAATGATAACAATTTC-ATTTAAAATAATTTATAAAATTATAAAACCACTTAAAGT
256 TTTAACCAAAAATGA-AAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGC
*
15083956 GAGTAACAAGGCTTTTGAAG
320 GAGTAACAAGGCTTTCGAAG
* * * * * *
15083976 GCATGAGTGACTACAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTCTCCCAATCC
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGC
* * * * * * * *
15084041 AAACAACTAGTAACGATATGTTTTTACAAAAAATGAAAGAGAATTCAACTTAAAATCATTTATAA
66 AAACAACAAATTATGATCTG-TTTTACCAAAAATGAAAGAAAATTCAATTTAAAATCATTTATAA
** * * * *
15084106 AGTTATAAAACCA-TTAAAGCGAGTAACAAGGCTTTTAAAGGTATGGGTGACTATAAATAGATTT
130 AGTTATAAAACCATTTAAAGCGAGTAA-AAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * * * * * *
15084170 TTTTTCTCATTAGATGGCTTTCACTTCACGTTTCTCGATGCAAACAAAAAATTATGATCTATTTT
194 TTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACAACAAATTATGATCTGTTTT
* * * *
15084235 AACTAAAATTGAAAAAATATTCAATTTAAAATCATTTATGAAGTTATAAAATCACTTAAAGCGAG
259 AACCAAAAATGAAAAAA-ATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAG
15084300 TAACAAGGCTTTCGAAG
323 TAACAAGGCTTTCGAAG
* ** * * * * *
15084317 GCATGAGTGACTACAAAAAGAC-TTTCTTGTCAATAGATGGCTTTCGCTTCACATTTCCCTAATT
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-GATG
* * * * * *
15084381 CAAACAACTAGTTATGATATGTTTTATCAAAAATGAAAGAAAATTTAACTTAAAATCATTTATAA
65 CAAACAACAAATTATGATCTGTTTTACCAAAAATGAAAGAAAATTCAATTTAAAATCATTTATAA
* * * * *
15084446 AGTTATAAAACCACTTAAAGCGAGTAAAAAGGCTTTTGAAGGTATGAGTGACAACAAATGGACTT
130 AGTTATAAAACCATTTAAAGCGAGT-AAAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * * * * * * * ** * *
15084511 TTCTTGTCAATGAATGGGTTTTGCTTCACATTTCACAATACAAGCGTCCAATTATGATATGTTTT
194 TTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACAACAAATTATGATCTGTTTT
* * * *** * *
15084576 AACCAAAAATGAAAAAAATTCAATTCAAAATTACTTATAAAGTTATAAAACTGGTTAAAGTGAGA
259 AACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGT
* *
15084641 AATAAGGCTTTCAAAG
324 AACAAGGCTTTCGAAG
* * * *
15084657 GCATGAGTGACTATAAATGGACGTTTGTTGTTAATGGATGGC-TTCTGCTTAACGTTTC-CTGAT
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTC-GCTTCACGTTTCTC-GAT
** * * * * *
15084720 GCAATTATCAAATTATCATTTGTTCTAACCAAAAAT--AAGAAACATTCAATTTTAAAACCATTT
64 GCAAACAACAAATTATGATCTGTT-TTACCAAAAATGAAAGAAA-ATTCAA-TTTAAAATCATTT
* * * ** * *
15084783 AT-AGGATTATTAAACCATTTAAAGGGAGTAACTTGGCTTTCGAATG--TGTGTTGACTATAAAT
126 ATAAAG-TTATAAAACCATTTAAAGCGAGTAA-AAGGCTTTCGAAGGCATGAG-TGACTATAAAT
* * * * * * *
15084845 GGACTTTTTTTGTAAATGAATGGCTTTCGTTTCACATTTC-CTAATGCAAACAACAAATTATGGT
188 GGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-GATGCAAACAACAAATTATGAT
*** * * * *
15084909 CTGTTTT-GGTAGAAAATGAAAAAAAAAAACTCAACTTAAAATCATATATAAAATTATAAAACCA
252 CTGTTTTAACCA-AAAATG----AAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCA
* * * * * *
15084973 TTTAAAGTGAGAAACTAGGGTTTTGAAG
312 CTTAAAGCGAGTAACAAGGCTTTCGAAG
* * *
15085001 TCATGAGTGACTATAAATGGATTTTTCTTGTCAATGGATGGCTTTCGCAT-ACGTTTCTCGATGC
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGC
* * ** * *
15085065 AAACAACAAATTATGTTCTAGTTTAATAAAAAAT-AAATGAAAATTAAAGTTAAAATCATTTATA
66 AAACAACAAATTATGATCT-GTTTTACCAAAAATGAAA-GAAAATTCAATTTAAAATCATTTATA
* * * * *
15085129 AA-TTATAAATCCAGTTAAAGCGAGTAATTACGCTTTCGAAGGCATGAGTGACTATAGATGGAC-
129 AAGTTATAAAACCATTTAAAGCGAGTAA-AAGGCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * * * * * **
15085192 CTTCATGCCAATGGATGGCTTTCGTTTCACGCTTCTTGATACAAACATTAAATTATGATCT-TTT
193 TTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACAACAAATTATGATCTGTTT
* * * *
15085256 TGAACCAAAAATGAGAAAAATTAAATTTTAAAATCATCTATAAGATTATATAAAACCA-TATAAA
258 T-AACCAAAAATGAAAAAAATTCAA-TTTAAAATCATTTATAA-AGT-TATAAAACCACT-TAAA
* *
15085320 GTGAGTAACTAGGCTTTCGAAG
318 GCGAGTAACAAGGCTTTCGAAG
* * * * *
15085342 GCATTAGTGACTATAAATGGACTTTTCCTATCAATGGATTGCTTTCGCTT-ACATTTCCTCGATG
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTT-CTCGATG
* * ** *
15085406 CAAACAACAAATTATGATATATTTTAACCAAAAATG-AA-AAAA-TCAGCTTAAAATTATTTAT-
65 CAAACAACAAATTATGATCTGTTTT-ACCAAAAATGAAAGAAAATTCAATTTAAAATCATTTATA
* * * * * * *
15085467 AAGATTATAAAACTATTTAAAGTGAGTAACTAGACTTTTGAAGGCATGGGTGACTATAAATGAAC
129 AAG-TTATAAAACCATTTAAAGCGAGTAA-AAGGCTTTCGAAGGCATGAGTGACTATAAATGGAC
* * * * * * * *
15085532 TTTTCTT-TCCAATAGCA-AGCTTTTGCTTCATGTTTCTTGGTGCAAACAACAAATTTTGATCAG
192 TTTTCTTGT-CAAT-GGATGGCTTTCGCTTCACGTTTCTCGATGCAAACAACAAATTATGATCTG
* * * *
15085595 TTTTAACCAAAAATGATAACAATTTCAATTTAAAATTATTGATAAAGTTATAAAACCACTTAAAG
255 TTTTAACCAAAAATGA-AAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAG
* * *
15085660 TGAGTAGCAAGGCTTTCGAAT
319 CGAGTAACAAGGCTTTCGAAG
* * * * * * * *
15085681 GTATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGACTTTCACTTCACATTTCCCAATTC
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGC
* * * * * * *
15085746 AAACAACAAGTTATGTTCTGTTTTTACCAAAAATTAAAGAAAATTCAACTGAAAATTATTTACAA
66 AAACAACAAATTATGATCTG-TTTTACCAAAAATGAAAGAAAATTCAATTTAAAATCATTTATAA
* ** * **
15085811 AGTTATACATTCATTTAAAGCAAGTAACAAGAAATTT-GAAGG-ATTGAGTGACTATAAATGGAC
130 AGTTATAAAACCATTTAAAGCGAGTAA-AAG-GCTTTCGAAGGCA-TGAGTGACTATAAATGGAC
* * * * * * *
15085874 TTTTCTTCTCATTGGATGGCTTTCGCTTCACGTTTCTTGGTGCAAACAACAAATTTTGATATGCT
192 TTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACAACAAATTATGATCTGTT
* * * *
15085939 TTAACCAAAAATTATAACAATTTCAATTTAAAATAATTTATAAAGTTATAAAACCACTTAAAGCG
257 TTAACCAAAAATGA-AAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCG
*
15086004 AGTAATAAGGCTTTCGAAG
321 AGTAACAAGGCTTTCGAAG
* * * * ** * * *
15086023 GCATCAATGACTACAAATCGACTTTTCTCATCAATGGATGGTTTTCGCTTCATGTTTC-CTAATG
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-GATG
* * * *
15086087 CAAACAACTAGTAATGATCTGTTTTTACCAAAAATGAAAGAAAATTCAACTTAAAATCATTTATA
65 CAAACAACAAATTATGATCTG-TTTTACCAAAAATGAAAGAAAATTCAATTTAAAATCATTTATA
* * * **
15086152 AAGTTAT-AAACCATTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGACTGAATATAAATAAACT
129 AAGTTATAAAACCATTTAAAGCGAGTAA-AAGGCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * * * *
15086216 TTTCTTCTCATTGGATGACTTTCAG-TTCACGTTTCTCAATGCAAATAATAAATTATTG-TCTGT
193 TTTCTTGTCAATGGATGGCTTTC-GCTTCACGTTTCTCGATGCAAACAACAAATTA-TGATCTGT
* * *
15086279 TTTGACCAAAAATGAAAAAAA-TCTAACTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGT
256 TTTAACCAAAAATGAAAAAAATTC-AATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGC
* *
15086343 GAGTAATAA-GCTTTTGAAG
320 GAGTAACAAGGCTTTCGAAG
* * * * * *
15086362 GCATGAATGACTATATATGGGCTTTTCTTGTCAATGGATGGGTTTTGCTTCACGTTTC-CTAT--
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGC
* * * * * * * * *
15086424 TAACATCCAATTATGATTTTTTTTAACAAAAAATGGAAA-AAAATTCAATCTAAAGTCATTTGTA
66 AAACAACAAATTATGATCTGTTTT-ACCAAAAAT-GAAAGAAAATTCAATTTAAAATCATTTATA
* * * *
15086488 AAGTTAT-AAACCACTTAAAGCGAGTAAGAAGGCTTTTGAAGGCATGAGCGACTATAAATAGACT
129 AAGTTATAAAACCATTTAAAGCGAGTAA-AAGGCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * * * * *
15086552 TTTGTTATCAATGGATGGCTTTCGCTTCATGTTTCTTGATGAAAATAACAAATTATCATCTG-TT
193 TTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACAACAAATTATGATCTGTTT
* * * * * * * *
15086616 TAACCAAAAAAGAGAAACATTCAATTTTCAAACCATTTAT-AGGATTATAAAACCATTTAAAGGG
258 TAACCAAAAATGAAAAAAATTCAA-TTTAAAATCATTTATAAAG-TTATAAAACCACTTAAAGCG
* *
15086680 AGTAACTAGGCTTTCAAAG
321 AGTAACAAGGCTTTCGAAG
* * * * *
15086699 GCATG-TTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCG-TTCCACATTTCCCAACG
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTT-CACGTTTCTCGATG
* * * *
15086762 CAAACAACAAATTATGGTCTCTTTTAGCCAAAAATGAAAAAAAATCTCAACTTAAAATCATTTAT
65 CAAACAACAAATTATGATCTGTTTTA-CCAAAAATGAAAGAAAAT-TCAATTTAAAATCATTTAT
* * * * * *
15086827 -AAGATTATAAAGCCATTTAAACCGAGCAACTAGGCGTTCGAAGCCATGAGTGACTATAAATGGA
128 AAAG-TTATAAAACCATTTAAAGCGAGTAA-AAGGCTTTCGAAGGCATGAGTGACTATAAATGGA
* * * * * * * * *
15086891 CTTTTCTTATCAATGAATGACTTTCGCTT-ATGTTTCCCAATGCAAACAATAAATTATTATCTAT
191 CTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACAACAAATTATGATCTGT
** * ** * *
15086955 TTTATTTC-AAAATGAAAGAAAACTCAATTTAAAATTGTCTCA-AAAGTTATAACACCACTTAAA
256 TTTA-ACCAAAAATGAAA-AAAATTCAATTTAAAATCAT-TTATAAAGTTATAAAACCACTTAAA
*
15087018 GCGAGTAA-ATAGGCTTTCAAAG
318 GCGAGTAACA-AGGCTTTCGAAG
* * * *
15087040 GCATGAGTGGCTACAAATGGACTTTTCTTGCCAATGGATGGCTTTCTCTTCACGTTTCTC-ATGC
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGC
** * * * * *
15087104 AAACAAGTAGTTATGATCTATTTTTACCAAAAAAGAAAGAAAATTGAACTTAAAATCATTTATAA
66 AAACAACAAATTATGATCT-GTTTTACCAAAAATGAAAGAAAATTCAATTTAAAATCATTTATAA
* * *
15087169 AGTTATAAAACTATTTAAAGCGAGTAACAAGGCTTTCGTAGGCATGAGTGACTATAAATGAACTT
130 AGTTATAAAACCATTTAAAGCGAGTAA-AAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * ** * * * * * *
15087234 TTCTTCTCATTGGATACCTTTCGCATCACGTTTCCCAATGCAAACATCTAATTATGATATGTTTT
194 TTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACAACAAATTATGATCTGTTTT
*** * * * * * *
15087299 AACTTGAGATGAAAAATATTTTGAA-TTAAAATCATTAAT-AAGATTAT-AAACCCCTTTAAAAC
259 AACCAAAAATGAAAAA-A-ATTCAATTTAAAATCATTTATAAAG-TTATAAAACCAC-TTAAAGC
** *
15087361 GAGTAACTCGACTTTCGAAG
320 GAGTAACAAGGCTTTCGAAG
* * * * * * * * * *
15087381 GCACGAGTAATTATAAATGGACTTTTCTTTTCATTGAATGGGTTTTGCTTCACGTTTCCCCATGC
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGC
* *
15087446 AAACAACAAATTATGATCTGTTTTACCCAAAAATGATAA-AGAATTCAATTTAAAATCAGTTATA
66 AAACAACAAATTATGATCTGTTTTA-CCAAAAATGA-AAGAAAATTCAATTTAAAATCATTTATA
* ** * * *
15087510 AAGTTATAAAACCACTTAAAATGAGTAATAAGGCTTTCGAAGGTATAAGTGACTATAAATGAACT
129 AAGTTATAAAACCATTTAAAGCGAGTAA-AAGGCTTTCGAAGGCATGAGTGACTATAAATGGACT
** * * * * * * * * *
15087575 TTTCTCATCAATGGATGGCTTTTGCTTCATGTTTCCCAATCCAAGCATCCAATTATGATATGTTT
193 TTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACAACAAATTATGATCTGTTT
* * *
15087640 AAACCAAAAATAAAAAAAATTCAATTTAAAATTATTTATAAAGTTATAAAACCACTTAAAGCGAG
258 TAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAG
* *
15087705 TAACAAAGCTTTCAAAG
323 TAACAAGGCTTTCGAAG
* * ** * * *
15087722 GCATGAGTGACTATAAATAGACTTTTCTTATCAATGGAAAGCTTTTGCTTCACATTTCTCAATGC
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGC
** * ** *
15087787 AAACAACAAATTATCTTCTGTTTTAACCAAAAATGACA-ACCATTCAATTTAAAATCATTTAAAG
66 AAACAACAAATTATGATCTGTTTT-ACCAAAAATGAAAGAAAATTCAATTTAAAATCATTTATA-
* ** * * * *
15087851 CAAGTTAT-TAGGC-TTTCAAATTCATGATGATGACAAATGGACTTT-----TC-T---TGTCAA
129 -AAGTTATAAAACCATTT-AAA-GC--GA-G-T-A-AAA-GG-CTTTCGAAGGCATGAGTGACTA
** * * * ** *
15087905 TGGATGG-CTTTCGCTT-T--AT-G-T---TTT--C--CA---AT-GC-AAAC-AACAA-ATTAT
183 TAAATGGACTTT-TCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACAACA-AAT
* * ***** * ** * *
15087950 GGTCT-ATTTCAGCCAA--AAATGAA--AAAAAAACTCAACCTAAAATCATTTGTAGGA-TTATA
246 --TATGATCTGTTTTAACCAAA--AATGAAAAAAATTCAATTTAAAATCATTTATA-AAGTTATA
* * *
15088009 AAACCATTTAAAGTGAGCAACAAGGCTTTCGAAG
306 AAACCACTTAAAGCGAGTAACAAGGCTTTCGAAG
* ** * * * * * *
15088043 CCATGAGTGACTATAAATGGACTTTTCACGTCAATAGATGGCTTTAGCTTTATGTTTGTTGATGC
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGC
* * * * * *
15088108 AAACATCAAATTATGATTTGTTTTAACAAAAAT-AAAAAAAATTCAATTTAAATTCATCTATAAA
66 AAACAACAAATTATGATCTGTTTTACCAAAAATGAAAGAAAATTCAATTTAAAATCATTTATAAA
* * * ** * * *
15088172 GTAATAAAACTATTTAAAGCTAGTAACAAGGCTTTTAAAGGGATGAGTGACTATAAATGGCCTCT
131 GTTATAAAACCATTTAAAGCGAGTAA-AAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTT
* * * * * * *
15088237 TCTTATCAATGGACGGC-TT--C-T---G---CTTGAT-TAAACATCAAATTATCATTTGTTTTA
195 TCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACAACAAATTATGATCTGTTTTA
* * * * *
15088291 ACCAAAATTGAAAAAAAAATCAGTTTAAAATTATTTATAAAGTTATAAAACCACTTAAAGCAAGT
260 ACCAAAAATG-AAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGT
* ** *
15088356 AATAAGGAATTCAAAG
324 AACAAGGCTTTCGAAG
* * * * * * * *
15088372 GCATTAGTCACTATAAATAGACTTTTTTTGTCAACGGATGGCTTTCGCTTGACTTTTCTTGATGC
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGC
* * * * * *
15088437 AAACATCAAATTATCATCTGTTTTAACCAAAAATGAGA-AAAATTTAATTTTAAAACCACTTAT-
66 AAACAACAAATTATGATCTGTTTT-ACCAAAAATGAAAGAAAATTCAA-TTTAAAATCATTTATA
* * * * * * * * *
15088500 AAGTTTATAAATCCATTAAAAGTGAGTAACTAGTCTTTCAAAGTCATGATTGACGATAAATGGAC
129 AAG-TTATAAAACCATTTAAAGCGAGTAA-AAGGCTTTCGAAGGCATGAGTGACTATAAATGGAC
* * * * * * * * *
15088565 TTTTCTTGTCAATTGATGGCTTTCTCTTTATGATTCCCCATGCAAACAATAAATTATGATATGTT
192 TTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACAACAAATTATGATCTGTT
* * * *
15088630 TTAACCAAAAATGAAAGAAAATTCAACTTAAAATCATTTAT-AAGATTATAAATCAATTTAAAGC
257 TTAACCAAAAATGAAA-AAAATTCAATTTAAAATCATTTATAAAG-TTATAAAACCACTTAAAGC
* * ** *
15088694 AAGCAATTAGGCTTTCAAAG
320 GAGTAACAAGGCTTTCGAAG
* ** * * *
15088714 GCATGAGTAACTATAAATAAACCTTTCTTGTCAATGGATGGCTTTCACTTCATGTTTCTCGATGC
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGC
* *
15088779 AAACAACAAATTATGATCTGTTTTAGCCAAAAAGGAAA-AATAATTCAATTTGAAATCATTTATA
66 AAACAACAAATTATGATCTGTTTTA-CCAAAAATGAAAGAA-AATTCAATTTAAAATCATTTATA
* * ** * * * *
15088843 AAGTTATAAAACCACTTAAAGTGAGTAACGTGGCTTTTGAACGCATAAGTGACTATAAAT-CAGC
129 AAGTTATAAAACCATTTAAAGCGAGTAA-AAGGCTTTCGAAGGCATGAGTGACTATAAATGGA-C
* * * * * * * * ** *
15088907 TCTTCTTATAAATTGATAGCTTTCGTTTCACGTTTC-CCATTGCAAACATCTTATTATGATTTGT
192 TTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGA-TGCAAACAACAAATTATGATCTGT
* * * * * ****
15088971 TTTATCTAGAAATGAAAAAATATT-GATTTAAAACCATTTAT-AAGATTATAAAATTGTTTAAAG
256 TTTAACCAAAAATGAAAAAA-ATTCAATTTAAAATCATTTATAAAG-TTATAAAACCACTTAAAG
* * **
15089034 TGAGTAACTAGGCTTTTAAAG
319 CGAGTAACAAGGCTTTCGAAG
* * * * *
15089055 GCATGAATGACTATAAATTGACTTTTCTTGTCAATAGAT-GCGTTTCGCTT-ATGTTTC-CTAAT
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC-TTTCGCTTCACGTTTCTC-GAT
* * *
15089117 GCAAACAACAAATTTTGATCTGTTTTAACAAAAAATGAAAGAAAATTTC-ACTTAAAATCATTTA
64 GCAAACAACAAATTATGATCTGTTTT-ACCAAAAATGAAAGAAAA-TTCAATTTAAAATCATTTA
* * **
15089181 TAATA-TTACAAAACTACGTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGG
127 TAA-AGTTATAAAACCATTTAAAGCGAGTAA-AAGGCTTTCGAAGGCATGAGTGACTATAAATGG
** * * * * * * * *
15089245 ACTTTTCTCATCAATGGATGGCTTTTGCTTCATGTTAC-CTAATGTAAGCATCCAATTATG---T
190 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-GATGCAAACAACAAATTATGATCT
* * * * *
15089306 GTTTTAACCCAAAATGAAAAAAAAATTGAATCTAAAATCATTTATAAAGCTATAAAACCACTTCA
254 GTTTTAACCAAAAATG--AAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAA
* * *
15089371 AGTGAGTAATAAGGCTTTTGAAG
317 AGCGAGTAACAAGGCTTTCGAAG
* * * * * * * *
15089394 GCATAAGTGACTATAAATAGACTTTTCTTGTCAATGGATAGTTTTTGCTTCACATTTCCCAATGC
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGC
* * * * *
15089459 AAACATCAAATTATCATCTATTTTAACCAAAAATG--AGAAACATTCAATTTTAAGACCATTTAT
66 AAACAACAAATTATGATCTGTTTT-ACCAAAAATGAAAGAAA-ATTCAA-TTTAAAATCATTTAT
* ** ** * ** ** * * *
15089522 -AGGATTACGAAATGAGTTAAAATGAGTAAGTGGGCTTTCTAAGACATGA-TAACTATAAAATGG
128 AAAG-TTATAAAACCATTTAAAGCGAGTAA-AAGGCTTTCGAAGGCATGAGTGACTAT-AAATGG
** * * * * * *
15089585 ACTTTTCTTGTCAATAAATGGCTTTTGCTTCATGTTT-TCCATTGCAATCAACAAATTATGGTAT
190 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGA-TGCAAACAACAAATTATGATCT
* * * * * *
15089649 GTTTTAGCCAAAAATGAAAAAAAACTCAAGTTAAAATCATTTAT-AAGATTGTAAAACTATTTAA
254 GTTTTAACCAAAAATG-AAAAAAATTCAATTTAAAATCATTTATAAAG-TTATAAAACCACTTAA
* *
15089713 AGTGAGCAACTAA-GCTTTCGAAG
317 AGCGAGTAAC-AAGGCTTTCGAAG
* * * * ** * *
15089736 CCA--A--GA--GTAAATGGACTTTTCTTGTCAATAGATGGCTTTTGCTTCATATTTCCCAATGC
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGC
* * * * * **
15089795 AAACATCAAATTATGATTTTTTTTAACC--AAA--AAA-AAAACTCAATTTAAATTCAACTATAA
66 AAACAACAAATTATGATCTGTTTT-ACCAAAAATGAAAGAAAATTCAATTTAAAATCATTTATAA
* * * ** ** *
15089855 AG-TAAAAAATCACTTAAAGCGAGTAATAAGGCTTTTAAAGGCATGAGTGACTATAAATATACTA
130 AGTTATAAAACCATTTAAAGCGAGTAA-AAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * * * * * * *
15089919 TTCTTGTCAATAGATGACTTTTGCTTCATGTTT-TCCAATGTAAACATCCAATTATGATCTGTTT
194 TTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCT-CGATGCAAACAACAAATTATGATCTGTTT
* * * * * * *
15089983 TTACCAAAAATGAAAAACAAATGAGTTTAAAATCATTTAGAAAGTTATAAAATCACTTAAAGAGA
258 TAACCAAAAATGAAAAA-AATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGA
* * *
15090048 GTAATAGGGCTTCCGAAG
322 GTAACAAGGCTTTCGAAG
* * * * * * *
15090066 GCATAAGTCACTCTAAATGGACTTTTCTTGTCAATGGATAGCTTTCTCTTTATGTTTC-CTGATG
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-GATG
* * * * ** * * *
15090130 CAAACATCAACTCATCATCTGTTTTTAGAAAAAATGAGA-AAAATTCAGTTTTAAAA-CTGTTTA
65 CAAACAACAAATTATGATCTG-TTTTACCAAAAATGAAAGAAAATTCA-ATTTAAAATC-ATTTA
* * ** ** * * *
15090193 T-AGGATTATAAAACCATTTAAAACGTTTAACAAGGCTTTTAAAGGCATGATTGACGATAAATTG
127 TAAAG-TTATAAAACCATTTAAAGCGAGTAA-AAGGCTTTCGAAGGCATGAGTGACTATAAATGG
* * * * * * * * * *
15090257 ACTTTTCTTGTCAATGGATGGCTTGCTCTTCATGATTCCCTATGCAAATAATAAATTATAACCTG
190 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACAACAAATTATGATCTG
* * * *
15090322 TTTTAACCAAAAATGAAAGAAAATTCAACTTAAAATCATTTAT-AAGATTATAAATCTATTTGAA
255 TTTTAACCAAAAATGAAA-AAAATTCAATTTAAAATCATTTATAAAG-TTATAAAACCACTT-AA
* *
15090386 A-TGAGTAACTAGGCTTTCGAAG
317 AGCGAGTAACAAGGCTTTCGAAG
* * * * * * *
15090408 GCGTGAATGACTATAAATGGATTTTTCTTGTCAATGGATGGTTTTCACTTCACGATTCTTGATGC
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGC
* * *
15090473 AAACAACAAATTGTGAT-TTTTTTAACTAAAAATGAAAGAAAATTCAA-TTAAAATCATTTAT-A
66 AAACAACAAATTATGATCTGTTTT-ACCAAAAATGAAAGAAAATTCAATTTAAAATCATTTATAA
* *
15090535 AGATTATAAAACCATTTAAAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAAT-GAGC
130 AG-TTATAAAACCATTTAAAGCGAGTAA-AAGGCTTTCGAAGGCATGAGTGACTATAAATGGA-C
* * * * * * * *
15090599 TTGTCTTTTCAATGGATGGCTTTCACTACATGTTTCTGGATGCAAACAACAAATTTTGATATGTT
192 TTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACAACAAATTATGATCTGTT
* * * * *
15090664 TTAACCAAAAATGATAACAATTTCAATTTAAAATAATTTATAAATTTATCAAACCACTTAAAGCG
257 TTAACCAAAAATGA-AAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCG
* *
15090729 AGTAAGAAGGTTTTCGAAG
321 AGTAACAAGGCTTTCGAAG
* * * * *
15090748 GCATGAGTGACTACAAATGGA-TTTTCTTTGTCAATGGATGGCTTTTGTTTCACGTTTCTCAATT
1 GCATGAGTGACTATAAATGGACTTTTC-TTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATG
* * *
15090812 CAAACAACTAATTATGATCTGTTTTTACCAAAAATAAAAGAAAATTCAACTTAAAATCATTTA-A
65 CAAACAACAAATTATGATCTG-TTTTACCAAAAATGAAAGAAAATTCAATTTAAAATCATTTATA
* * * * * *
15090876 AAGATTATAAATCCATTTATAGCAAGTAACTAGGCTTTCGAAGGTATGAGTGACTATAAATGCAC
129 AAG-TTATAAAACCATTTAAAGCGAGTAA-AAGGCTTTCGAAGGCATGAGTGACTATAAATGGAC
* * * * * * *
15090941 TTTTTTTGTCAATGGATAGCTTTTGCTTCATGTTTCCCAATGCAAGCAACAAATTATGATCTGTT
192 TTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACAACAAATTATGATCTGTT
* * * * **
15091006 TTAGCCAAAAAGGAAAAAAA-TCAATTTAAACTAATTTATAAAGTTATAAAACCACTTAAATTGA
257 TTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGA
** *
15091070 GTAGTAGGGCTTTCGAA-
322 GTAACAAGGCTTTCGAAG
* * * * * * * *
15091087 GCTATAAGTCACTATAAATGGACTTTTCTTGTCAATGGATGACTTTTGCTTAACATTTCCCAATG
1 GC-ATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATG
* * * * * * *
15091152 CAAACATCAAAGTATCATCTGTTTTGACAAAAAATGAGA-AAAATTCAGTTTTAAAACCATTTAT
65 CAAACAACAAATTATGATCTGTTTT-ACCAAAAATGAAAGAAAATTCA-ATTTAAAATCATTTAT
* * * *
15091216 -AGGATTATAAAACCA-TTAGAAGCAAGTAACTAGGCTTTCGAAGGCATGACTGA-TGATAAATG
128 AAAG-TTATAAAACCATTTA-AAGCGAGTAA-AAGGCTTTCGAAGGCATGAGTGACT-ATAAATG
* * * *** * * * * **
15091278 AACTTTTCTTGTCAATGGGTGGATTAATCTTCATGATTCCCAATGCAAACAGTAAATTATGATCT
189 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACAACAAATTATGATCT
* * * * * * *
15091343 CTTTTAATC-AAAATGAAAGAAAATTTAACTTAGAATCATTTAT-AAGATTATAAATCCATTTAA
254 GTTTTAACCAAAAATGAAA-AAAATTCAATTTAAAATCATTTATAAAG-TTATAAAACCACTTAA
* *
15091406 AGCAAGTAACTAGGCTTTCGAAG
317 AGCGAGTAACAAGGCTTTCGAAG
* * * * *
15091429 GCATGAGTGACTATGATTGAACTTTTTTTGTCAATGGATGGCTTTCGCTTCATGTTTC-CTGATG
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-GATG
* * *
15091493 CAAACAACAAATTATGATCTGTTTTAGCTAAAAAGGAAA-AAAATGCAATTTAAAATCATTTATA
65 CAAACAACAAATTATGATCTGTTTTA-CCAAAAATGAAAGAAAATTCAATTTAAAATCATTTATA
* * * * * * **
15091557 AAGTTATAAAACCACTTAAAGTGAGTAACATGGCTTTTGAAGGCATGAGTGAGTAGAAATCTACT
129 AAGTTATAAAACCATTTAAAGCGAGTAA-AAGGCTTTCGAAGGCATGAGTGACTATAAATGGACT
* ** * * * * *
15091622 TTTCTTGTAAATGGATAACTTTCGTTTCACGTTTC-CTAATGCAAACATCCAATTATGATTTGTT
193 TTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-GATGCAAACAACAAATTATGATCTGTT
* * * * * * *
15091686 GTAACTAGAAATGAAAAAAATTTCAATTTAAATTATGATTTGTTGTAACCAAAAGTGAAAGAAAT
257 TTAACCAAAAATGAAAAAAA-TTCAATTTAAA--ATCA----TT-T-A--TAAAGTTATA-AAA-
* * * * * * * *
15091751 TTCACTTAAAATC-ATTTATAA-GATTGT-AAAA
309 -CCACTT-AAAGCGAGTAACAAGGCTT-TCGAAG
* * * * **
15091782 CCATTTAAAGCGAGC-A-ACAA-GG-CTTTCGAATGCATGAGTGACTACAAATGGGCTTTTCCTT
1 GCA--T-GAGTGA-CTATA-AATGGACTTT----T-C-T---TG--T-C-AAT-GG--ATGGCTT
* * * * *
15091843 TCAATGGATGGCTT-TCGTTTCAC-ATTTCCCAATGCAACAAACAAATTATGGTCTGTTTTAGCC
45 TC--------GCTTCACGTTTCTCGA--T-GCAA-ACAACAAA----TTATGATCTGTTTTA-CC
* * * * * *
15091906 AAAAATGAAAAAAAAAACTCTACTTAAATTCATTTAT-GAGATTATAAAACCATTTAAAGCGAG-
93 AAAAATG--AAAGAAAATTCAATTTAAAATCATTTATAAAG-TTATAAAACCATTTAAAGCGAGT
* * * * * * * * *
15091969 AAACTAGGCTATCGTAGACATGAGTGAATATAAATTGACTTTTC-TCTCAAAAGGAAGGCTTTTG
155 AAA--AGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTC-AATGGATGGCTTTCG
* * * * * * * * ***
15092033 CTTCAC-ATTCCCAAAGCAAACAATAGATTGTTATCTGTTTT-GGTAAAATATGAAAAAAACAAT
217 CTTCACGTTTCTCGATGCAAACAACAAATTATGATCTGTTTTAACCAAAA-ATG--AAAAA-AAT
* * ** *
15092096 TCAACTTAAAATCATTTAT-AAGATTATAGAACCGTTTAAAGCGAGTAATC-AGGCTTTTGAAG
278 TCAATTTAAAATCATTTATAAAG-TTATAAAACCACTTAAAGCGAGTAA-CAAGGCTTTCGAAG
* * ** * * * *
15092158 GCATTAGTGACTATAAATGCACTTTTCTCCTCATTGGATTGATTTCACTTCACGTTTC-CTGATG
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-GATG
* * * *
15092222 CAAACAATAAATTATGATATGTTTTAACCAAAAGTGAAAAAAAAATTCAATTTAAAATCATTTAT
65 CAAACAACAAATTATGATCTGTTTT-ACCAAAAATG-AAAGAAAATTCAATTTAAAATCATTTAT
*
15092287 AAAGTTATAAAACCACTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGAC
128 AAAGTTATAAAACCATTTAAAGCGAGTAA-AAGGCTTTCGAAGGCATGAGTGACTATAAATGGAC
* * * * *
15092352 TTTTATTGTCAATGGATGGCTTGCGCTTCACGTTTC-CTGATGCAAACATCAAATTATCATCTGC
192 TTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-GATGCAAACAACAAATTATGATCTGT
** * * * * *
15092416 TTTAA-C--------AAAAAATT--A---CCAA-CA--T-TCAA-TTTTAAAACTATTTAAGGCG
256 TTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCG
* ** * *
15092462 AGTTAGTAGACTTTCAAAG
321 AGTAACAAGGCTTTCGAAG
* * * * * * *
15092481 GCATGA-TGACTATAAATGAATTTTTCTTGTGAGTGGATGGCTTTTGCTTCACATTT-TACAATG
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCT-CGATG
* * * * * * *
15092544 TAAACAACAAATTATTG-TATGTTTTGGCTAAAAAT-AAA-AAAACTCAACTTAAAATCATCTAT
65 CAAACAACAAATTA-TGATCTGTTTT-ACCAAAAATGAAAGAAAATTCAATTTAAAATCATTTAT
* * * ** * **
15092606 -AAGATTATAAAACCATTTAAAGAGAGCAACTAGGCTTTCGAAGTTATAAGTGACTGGAAATGGA
128 AAAG-TTATAAAACCATTTAAAGCGAGTAA-AAGGCTTTCGAAGGCATGAGTGACTATAAATGGA
* * * * * *
15092670 CTTTTCATGTCAATAGATAGCTTTTC-CTTCATGTTTC-CTGATGCAAACATCAAATTATGATTT
191 CTTTTCTTGTCAATGGATGGC-TTTCGCTTCACGTTTCTC-GATGCAAACAACAAATTATGATCT
* * * * * * * * *
15092733 GTTTTAACCAAAAATAAAAAAAAGTTTAATTTAAATTAATCTATAAAGTAATCAAACTAATTAAA
254 GTTTTAACCAAAAATGAAAAAAA-TTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAA
* *
15092798 GTGAGTAACAAGTCTTTCGAAG
318 GCGAGTAACAAGGCTTTCGAAG
* * * * * * *
15092820 GCATGAGTGATTATAAATAGACTCTTCTTGCCAATGGATGGC-TTCTGGTTCACGTTTC-CCA-A
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTC-GCTTCACGTTTCTCGATG
* * * **
15092882 CAAA-AACATTCAATTATGAT-TTTTTTAACCAAAAAGGAAA-AAAATTTAGCTTAAAATCATTT
65 CAAACAACA---AATTATGATCTGTTTT-ACCAAAAATGAAAGAAAATTCAATTTAAAATCATTT
* * * * * *
15092944 ATAAAGTTATAAAACCACTTAAAGCAAGTAACAGGGATTTCGAAGGCATGAGTCACTATAAATAG
126 ATAAAGTTATAAAACCATTTAAAGCGAGTAA-AAGGCTTTCGAAGGCATGAGTGACTATAAATGG
* * * * * * * *
15093009 AATGTTCTTGTCAATGGATGGCTTTCGCTTGATGTTTC-CTTATGCAAACATCAAATTATCATAT
190 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-GATGCAAACAACAAATTATGATCT
* * ** * * * * * *
15093073 ATTTTAACAAAAAATGAGTAAAATTCAGTTTTCAGA-CTATTTAT-AGGATTATAAAACTATTTA
254 GTTTTAACCAAAAATGAAAAAAATTCA-ATTTAAAATC-ATTTATAAAG-TTATAAAACCACTTA
* * * * * *
15093136 AAGCAAGCAACTAGACTTCCAAAG
316 AAGCGAGTAACAAGGCTTTCGAAG
* * * ** * *
15093160 GCATGA-TAGA-TGATAAATGGACTTCTCTTGTCAATGGATGGCTTGCTCTTCACAATTCCCAAT
1 GCATGAGT-GACT-ATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGAT
* * * **
15093223 GCAAACAATAAATTATGATCTGTTGTAACCAAAAATGAATGAAAATTCAACCTAAAATCATTTAT
64 GCAAACAACAAATTATGATCTGTT-TTACCAAAAATGAAAGAAAATTCAATTTAAAATCATTTAT
* * * *
15093288 -AAGATTATAAATCCATTTAAAGCAAGTAACTAGGCTTTTGAAGGCATGAGTGACTAT-AATGGA
128 AAAG-TTATAAAACCATTTAAAGCGAGTAA-AAGGCTTTCGAAGGCATGAGTGACTATAAATGGA
* * * * * * ** * *
15093351 CTTTTCCTGTTAATAGATGGTTTTCACTTCACGTCTCTTAATGCAAACAACAATTTATTAT-TGT
191 CTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACAACAAATTATGATCTGT
* * *
15093415 TTTAGCCTAAAA-GAAAAAAACTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCG
256 TTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCG
* *
15093479 AGTAACATGGCTTTCAAAG
321 AGTAACAAGGCTTTCGAAG
** * * * * *
15093498 GCATGAGTGACTATAAATTTACTTTTCTTGTCAATGGATAGCTTTCGCTTCATGTTTCCCAATGT
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGC
* * * * * * *
15093563 AACCATCCAATTATGATTTGTTTTAGCTAGAAATG-AA-AAAATT-GATTTAAAATCATTTAT-A
66 AAACAACAAATTATGATCTGTTTTA-CCAAAAATGAAAGAAAATTCAATTTAAAATCATTTATAA
* * * * ** *
15093624 AGATTAAAAAATCATTTAAAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGTTTATAAATTGACT
130 AG-TTATAAAACCATTTAAAGCGAGTAA-AAGGCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * * *
15093689 TTTCTTTTC-A---ATGCCTTTTGCTT-ATGTTTCTCGATGCAAACAACAAATTATGATATGTTT
193 TTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACAACAAATTATGATCTGTTT
* * *
15093749 TAACCAAAAAATGAAAGAAAATTCCACTTT-AAATCATTTATAGCA-TTATAAAACCATTTAAAG
258 TAACC-AAAAATGAAA-AAAATT-CAATTTAAAATCATTTATA-AAGTTATAAAACCACTTAAAG
* * *
15093812 CGAGCAACTAGGCTTTCAAAG
319 CGAGTAACAAGGCTTTCGAAG
* * * * * * * *
15093833 CCATCAGTAACTATAAGTGGACTTTTCTTGCCCAA-GGATGGCTTTCACTTCATGTTTC-CTAAT
1 GCATGAGTGACTATAAATGGACTTTTCTTG-TCAATGGATGGCTTTCGCTTCACGTTTCTC-GAT
* * * * *
15093896 GCAAATAACAAATTATGATTTGTTTTAGCTAAAAATGAAAAAAAATTCAACTTAAAATCATTTAT
64 GCAAACAACAAATTATGATCTGTTTTA-CCAAAAATGAAAGAAAATTCAATTTAAAATCATTTAT
* ** *
15093961 -AAGATTATAAAA-CAGTTTAAAGCGAGTAACTAGGCTTTTAAAGGCATGAGTGACTATAAATAG
128 AAAG-TTATAAAACCA-TTTAAAGCGAGTAA-AAGGCTTTCGAAGGCATGAGTGACTATAAATGG
* * * * * * *
15094024 ACTTTTTTTCTCATTGGATGGCTTTCGCTTCACGTTTC-CAAATGCAAACAATAAATTATAATAT
190 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-GATGCAAACAACAAATTATGATCT
**
15094088 GTTTTAACCAAAAATGAAAAAAATTCAAACTAAAATCATTTATAAAGTTATAAAACCACTTAAAG
254 GTTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAG
* *
15094153 TGAGTAATAAGGCTTTCGAAG
319 CGAGTAACAAGGCTTTCGAAG
* * * *
15094174 GTATGAGTGACTATAAATGGACTTTTCTTGTCGATGGATGGCTTTCGCTTCATGTTT-TCCAATG
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCT-CGATG
* * * * * * *
15094238 CAAACAACAAATCATCATCTGTTTTAGCCAAAAATGAAAAAAAAAACTCAACTCAAAATCATCTA
65 CAAACAACAAATTATGATCTGTTTTA-CCAAAAATG--AAAGAAAATTCAATTTAAAATCATTTA
* * * * * *
15094303 T-AAGATTATAAAACC-TTCAAAGCGAGCAACTAGGCTTTCGAAGCCATGAGTGACTGTAAATGA
127 TAAAG-TTATAAAACCATTTAAAGCGAGTAA-AAGGCTTTCGAAGGCATGAGTGACTATAAATGG
*
15094366 ACTTTTCTTGTCAATGGATGGC-TTCTGCTT-ACATTTCTCGAT-CTAAACAACAAATTATGATC
190 ACTTTTCTTGTCAATGGATGGCTTTC-GCTTCACGTTTCTCGATGC-AAACAACAAATTATGATC
* * * * * * *
15094428 TATTTTAACTAAAAATGAAAGAAAATTCAACTTAAAATCATTT-TGCAAGACTATAAATCCATTT
253 TGTTTTAACCAAAAATGAAA-AAAATTCAATTTAAAATCATTTAT-AAAG-TTATAAAACCACTT
* *
15094492 AAAGCGAGTAACTACGCTTTCGAAG
315 AAAGCGAGTAACAAGGCTTTCGAAG
* * * * * * * * *
15094517 CCATAAGTGACTATAACTAGACTTTTCTTGTCGATGGATGGCTTTTGCTTCACATGTC-CTAATG
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-GATG
* * * * *
15094581 AAAACAACAAATTATGATTTGTTTAACCAAAAATGAAA-AAAACTCAATTTAAAATCATGTATAA
65 CAAACAACAAATTATGATCTGTTTTACCAAAAATGAAAGAAAATTCAATTTAAAATCATTTATAA
* ** *
15094645 AG-T-T-AAA-CACTTAAATTGAGTAACAAGGCTTTCGAAGGCATCAGTGACTATAAATGGACTT
130 AGTTATAAAACCATTTAAAGCGAGTAA-AAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * * * * *
15094706 TTCTTTTCAATTGATGGCTTTCGCTT-ATGTTTC-CTAATGCAAACAATAAATTATGATTTGTTT
194 TTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-GATGCAAACAACAAATTATGATCTGTTT
* * * * * * ** * *
15094769 TAACAAAAAATGAAAGAAAACTCCA-CTAAATATAATTCAT-AAGATTATAAAATTATTTAAAGT
258 TAACCAAAAATGAAA-AAAATTCAATTTAAA-ATCATTTATAAAG-TTATAAAACCACTTAAAGC
* *
15094832 GAGTAACTAGGCTTTTGAAG
320 GAGTAACAAGGCTTTCGAAG
* * * * * *
15094852 GCATGAGTGAATATAAATTGACTTTTCTTGTCGATGGATGGCTTT-GCTTCATGTTTCCCAATGC
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGC
* * *
15094916 AAACAATAAATTGTGATTTGTTTTAGCCAAAAATGAAA
66 AAACAACAAATTATGATCTGTTTTA-CCAAAAATGAAA
15094954 AAAGAAACTC
Statistics
Matches: 11705, Mismatches: 2429, Indels: 1173
0.76 0.16 0.08
Matches are distributed among these distances:
311 4 0.00
312 3 0.00
313 3 0.00
314 1 0.00
315 1 0.00
316 1 0.00
317 1 0.00
318 10 0.00
319 134 0.01
320 50 0.00
321 134 0.01
322 74 0.01
323 47 0.00
324 129 0.01
325 120 0.01
326 13 0.00
327 13 0.00
328 15 0.00
329 136 0.01
330 172 0.01
331 130 0.01
332 32 0.00
333 13 0.00
334 53 0.00
335 330 0.03
336 508 0.04
337 65 0.01
338 241 0.02
339 628 0.05
340 2328 0.20
341 2321 0.20
342 2468 0.21
343 748 0.06
344 337 0.03
345 96 0.01
346 3 0.00
347 5 0.00
348 4 0.00
349 11 0.00
350 3 0.00
351 8 0.00
352 11 0.00
353 8 0.00
354 13 0.00
355 6 0.00
356 6 0.00
357 1 0.00
358 1 0.00
359 6 0.00
360 1 0.00
361 2 0.00
362 2 0.00
363 3 0.00
364 1 0.00
365 1 0.00
366 1 0.00
367 3 0.00
368 2 0.00
369 1 0.00
370 7 0.00
371 1 0.00
372 1 0.00
373 7 0.00
374 7 0.00
375 12 0.00
376 8 0.00
377 10 0.00
378 9 0.00
379 3 0.00
380 8 0.00
381 1 0.00
382 2 0.00
384 22 0.00
385 5 0.00
386 38 0.00
387 85 0.01
388 15 0.00
389 2 0.00
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (339 bp):
GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGC
AAACAACAAATTATGATCTGTTTTACCAAAAATGAAAGAAAATTCAATTTAAAATCATTTATAAA
GTTATAAAACCATTTAAAGCGAGTAAAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTT
CTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACAACAAATTATGATCTGTTTTAA
CCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAA
CAAGGCTTTCGAAG
Found at i:15082022 original size:153 final size:153
Alignment explanation
Indices: 15081743--15082022 Score: 346
Period size: 153 Copynumber: 1.8 Consensus size: 153
15081733 TTATAAGACA
* * * *
15081743 ACTTAAAGTGAGTAACAAAACTTTCGAAGCAATTAGTCACTATAAATAGACTTTTTTTGTCAATG
1 ACTTAAAGTGAGTAACAAAACTTTCGAAGCAATGAGTCACTACAAATAGACTTTTCTTATCAATG
* ** *
15081808 GATGGCTTTCGCATGATGCTTCCCAATGCAAACATGAAATTATCATCTATTTTAACAAAAAAAAT
66 GATGGCTTTCGCATCATGCTTCCCAATGCAAACAACAAATTATCATCAATTTTAACAAAAAAAAT
15081873 GAGAAATATTGAGTTTTAAAACC
131 GAGAAATATTGAGTTTTAAAACC
* ** *
15081896 ACTTAAAGTGAGTAATAAGGCTTTCGAAGGC-ATGAGTGACTACAAATAGACTTTTCTTATCAAT
1 ACTTAAAGTGAGTAACAAAACTTTCGAA-GCAATGAGTCACTACAAATAGACTTTTCTTATCAAT
* * * * * * * * *
15081960 GGATGGCTTTTGCTTCATGTTTCCCGATTCAAACAACTAGTTATGATCAACTTTTACCAAAAA
65 GGATGGCTTTCGCATCATGCTTCCCAATGCAAACAACAAATTATCATCAA-TTTTAACAAAAA
15082023 TGAAACAAAA
Statistics
Matches: 104, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
153 91 0.88
154 13 0.12
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33
Consensus pattern (153 bp):
ACTTAAAGTGAGTAACAAAACTTTCGAAGCAATGAGTCACTACAAATAGACTTTTCTTATCAATG
GATGGCTTTCGCATCATGCTTCCCAATGCAAACAACAAATTATCATCAATTTTAACAAAAAAAAT
GAGAAATATTGAGTTTTAAAACC
Found at i:15082192 original size:171 final size:170
Alignment explanation
Indices: 15081884--15087847 Score: 4989
Period size: 171 Copynumber: 35.0 Consensus size: 170
15081874 AGAAATATTG
* * * * *
15081884 AGTTTTAAAACCACTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTACAAATAGACTT
1 AGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * * * * * * **
15081949 TTCTTATCAATGGATGGCTTTTGCTTCATGTTTCC-CGATTCAAACAACTAGTTATGATCAACTT
66 TTCTTCTCAATGGATGGCTTTCGCTTCACG-TTCCTCAATGCAAACAACAAATTATGATC-TGTT
*
15082013 TT-ACCAAAAATGAAACAAAATTCAACTTAAAATCATTTATAA
129 TTAACCAAAAATGAAA-AAAATTCAATTTAAAATCATTTATAA
* * * * * * *
15082055 AGTTATAAAACTATTTAAAGTGAGTAACAAGGTTTTTGAAGCCATGAGTGACTATAAGTGGACTT
1 AGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * * * * * *
15082120 TTCTTCTCATTGGATGGCTTTCGTTTCACGTCCCTCGATGTAGACAACAAATTATGATTTGTTTT
66 TTCTTCTCAATGGATGGCTTTCGCTTCACGTTCCTCAATGCAAACAACAAATTATGATCTGTTTT
*
15082185 AACCAAAAAGGAAAAAATATTCAATTTAAAATCATTTATAA
131 AACCAAAAATGAAAAAA-ATTCAATTTAAAATCATTTATAA
* *
15082226 AGTTATAAAACCACTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGACTACAAATGGACTT
1 AGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* ** * * * * * * * *
15082291 TTCTTGTCAATTAACGGCTTTCGCTTCATGTTTCCT-AATTCAAAGAACTAGTAATGATCTATTT
66 TTCTTCTCAATGGATGGCTTTCGCTTCACG-TTCCTCAATGCAAACAACAAATTATGATCTGTTT
* ** * *
15082355 TTATGATAAATGAAAGAAAATTCAACTTAAAAATCATTTATAA
130 TAACCAAAAATGAAA-AAAATTCAA-TTTAAAATCATTTATAA
* * * * * *
15082398 AGTTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCAAAGGCATGAGTGGCAATACATGGACTT
1 AGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * *
15082463 TTCTTCTCATTGGATGGCTTTCGCTTCACGTTTCTCGATGCAAACAACAAATTATGATCTGTTTT
66 TTCTTCTCAATGGATGGCTTTCGCTTCACGTTCCTCAATGCAAACAACAAATTATGATCTGTTTT
* * * *
15082528 ACCCAAAAATGAAAAAAAAATCGATTTAAAACCATTTATAA
131 AACCAAAAATG-AAAAAAATTCAATTTAAAATCATTTATAA
* * * * * * * * * *
15082569 AGTTGTAAAACCACTTACAGCGTGTAATAAGGGTTTCGAAGGCATGTGTGAGTACAGATGAACTT
1 AGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * * * * * * * *** *
15082634 TTTTTGTCAATGGATGGCTTTCACTTCATGTTTCTCGATTCAAACAGCTTGTTATGATCTATTTT
66 TTCTTCTCAATGGATGGCTTTCGCTTCACGTTCCTCAATGCAAACAACAAATTATGATCTGTTTT
* * ** *
15082699 TACAAAAAATGAAAGAAAATTCAACTGAAAAATCATTAATAA
131 AACCAAAAATGAAA-AAAATTCAA-TTTAAAATCATTTATAA
* ** * * *
15082741 AGCTATAAAACCA-TTTTAGCGAGTAACAAGGCTTTCCAAGGCATGAGTGACTGTAAATGGACGT
1 AGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * * * * *
15082805 TTC-TCGTCAATGGATGGGTTTTGGTTCACGTTTCC-CGATGTAAACAACAAATTATGATCTTTT
66 TTCTTC-TCAATGGATGGCTTTCGCTTCACG-TTCCTCAATGCAAACAACAAATTATGATCTGTT
* * * *
15082868 TTAATCAAAAATGAAAAACAATTCAATTTAAAGTTATTTTTAA
129 TTAACCAAAAATGAAAAA-AATTCAATTTAAAATCATTTATAA
* * * * *
15082911 AGTCATAAAACCACTTAAAGCGAGTAACAAGACTTTCGAAGGCATGAGTGATTATAAATGAAC-G
1 AGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * * * * * ** ** * *
15082975 TTGTTGTCAATGGAGGGCTTTCACTTGATGTTTTTCGGTGCAAACATCAAATTATCATAC-GTTT
66 TTCTTCTCAATGGATGGCTTTCGCTTCACGTTCCTCAATGCAAACAACAAATTATGAT-CTGTTT
* * * *
15083039 TAACCAAAAATGAGAAACATTAAATTTTAAAACCATTTAT-A
130 TAACCAAAAATGAAAAAAATTCAA-TTTAAAATCATTTATAA
* * * * ** * *
15083080 GGATTATAAAACCATTTAAAAG-GAATCATTAGGCTTTCAAAGGCATG-TTGACTATAAATGGAC
1 AG-TTATAAAACCACTT-AAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGAC
* ** * *
15083143 TTTTCTTGCT-AATGGATGGCTTTCGCTTCACGTTCCT-AATGCAAATATTAAATTATGATTTTT
64 TTTTCTT-CTCAATGGATGGCTTTCGCTTCACGTTCCTCAATGCAAACAACAAATTATGATCTGT
* * *
15083206 TTTGGAA-CAAAAATGAGAAAAATTCATTTTTGAAATCATTTAT-A
128 TTT--AACCAAAAATGAAAAAAATTCA-ATTTAAAATCATTTATAA
* * * * *
15083250 AGATTCTAAAACTA-TTGAAAGTGAGTAACAAGTCTTTCAAAGGCATGAGTGACTATAAAATGGA
1 AG-TTATAAAACCACTT-AAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTAT-AAATGGA
* * ** *
15083314 CTTTTTTTGC-CAATCGATGGCTTTCGCTTCACGTTTCCT-AATGCAAACTTCTAATTATGATCT
63 CTTTTCTT-CTCAATGGATGGCTTTCGCTTCACG-TTCCTCAATGCAAACAACAAATTATGATCT
* * * *
15083377 GTTTGAA-CAAAAACTGAAAAAAAAATTCAATTCAAAGTCACTTATAA
126 GTTTTAACCAAAAA-TG--AAAAAAATTCAATTTAAAATCATTTATAA
* * * * *
15083424 AGTTATAAAACCACTTAAAGTGAGTAACTAGGCTTTCAAATGCATGAGTGACTATAAATAGACTT
1 AGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * * * * *
15083489 TTCTTGTCAATGGATGGCTTTTGCCTCACGTTTCCT-GATGCAAAAAACAAATTATGATCAGTTT
66 TTCTTCTCAATGGATGGCTTTCGCTTCACG-TTCCTCAATGCAAACAACAAATTATGATCTGTTT
* *
15083553 TAACCAAAAATAAAAAAAATTTCAATTTAAAATCATTTGTAA
130 TAACCAAAAATGAAAAAAA-TTCAATTTAAAATCATTTATAA
* * *
15083595 AGTGATAAAACCACTTAATA-CGAGTAACAAGGCTTTCAAAGGCATGAGTGACTACAAATGGAC-
1 AGTTATAAAACCACTTAA-AGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * * * *
15083658 TTTCTTGTCAATGGATGGCTTTCGCTTCACATTTCC-CAATTCAAACAACTAGTTATGTTCTGCT
65 TTTCTTCTCAATGGATGGCTTTCGCTTCAC-GTTCCTCAATGCAAACAACAAATTATGATCTG-T
* ** * *
15083722 TTT-ACCAAAAACGAAAGGCAATTCAACTGAAAATCATTT-TCAA
128 TTTAACCAAAAATGAAA-AAAATTCAATTTAAAATCATTTAT-AA
* * *** * * *
15083765 AGTTATAAAATCATTTAAAGCGAGTAACAATAAATTT-GAAGGCTTGAGTGACTTTAAAGGGACT
1 AGTTATAAAACCACTTAAAGCGAGTAACAA-GGCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * * * * * * * *
15083829 TTTCTTCTCATTGGATGGCTTTCGCTTAACTTTTCTTAGTGCAAACAACAAATTTTAATATGCTT
65 TTTCTTCTCAATGGATGGCTTTCGCTTCACGTTCCTCAATGCAAACAACAAATTATGATCTGTTT
* * *
15083894 TAACCAAAAATGATAACAATTTC-ATTTAAAATAATTTATAA
130 TAACCAAAAATGA-AAAAAATTCAATTTAAAATCATTTATAA
* * * *
15083935 AATTATAAAACCACTTAAAGTGAGTAACAAGGCTTTTGAAGGCATGAGTGACTACAAATGGACTT
1 AGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * * * * * * *
15084000 TTCTTGTCAATGGATGGCTTTCGCTTCATGTCTCC-CAATCCAAACAACTAGTAACGATATGTTT
66 TTCTTCTCAATGGATGGCTTTCGCTTCACGT-TCCTCAATGCAAACAACAAATTATGATCTGTTT
* * * *
15084064 TTACAAAAAATGAAAGAGAATTCAACTTAAAATCATTTATAA
130 TAACCAAAAATGAAA-AAAATTCAATTTAAAATCATTTATAA
** * * * *
15084106 AGTTATAAAACCA-TTAAAGCGAGTAACAAGGCTTTTAAAGGTATGGGTGACTATAAATAGATTT
1 AGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * * * * * * *
15084170 TTTTTCTCATTAGATGGCTTTCACTTCACGTTTCTCGATGCAAACAAAAAATTATGATCTATTTT
66 TTCTTCTCAATGGATGGCTTTCGCTTCACGTTCCTCAATGCAAACAACAAATTATGATCTGTTTT
* * *
15084235 AACTAAAATTGAAAAAATATTCAATTTAAAATCATTTATGA
131 AACCAAAAATGAAAAAA-ATTCAATTTAAAATCATTTATAA
* * **
15084276 AGTTATAAAATCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTACAAAAAGAC-T
1 AGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * * * * * *
15084340 TTCTTGTCAATAGATGGCTTTCGCTTCACATTTCC-CTAATTCAAACAACTAGTTATGATATGTT
66 TTCTTCTCAATGGATGGCTTTCGCTTCAC-GTTCCTC-AATGCAAACAACAAATTATGATCTGTT
* * *
15084404 TT-ATCAAAAATGAAAGAAAATTTAACTTAAAATCATTTATAA
129 TTAACCAAAAATGAAA-AAAATTCAATTTAAAATCATTTATAA
* * * * *
15084446 AGTTATAAAACCACTTAAAGCGAGTAAAAAGGCTTTTGAAGGTATGAGTGACAACAAATGGACTT
1 AGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * * * * * * * * ** * *
15084511 TTCTTGTCAATGAATGGGTTTTGCTTCACATTTCACAATACAAGCGTCCAATTATGATATGTTTT
66 TTCTTCTCAATGGATGGCTTTCGCTTCACGTTCCTCAATGCAAACAACAAATTATGATCTGTTTT
* * *
15084576 AACCAAAAATGAAAAAAATTCAATTCAAAATTACTTATAA
131 AACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAA
*** * * * * *
15084616 AGTTATAAAACTGGTTAAAGTGAGAAATAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACGT
1 AGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * * * * ** * * *
15084681 TTGTTGTTAATGGATGGC-TTCTGCTTAACGTTTCCT-GATGCAATTATCAAATTATCATTTGTT
66 TTCTTCTCAATGGATGGCTTTC-GCTTCACG-TTCCTCAATGCAAACAACAAATTATGATCTGTT
* * *
15084744 CTAACCAAAAAT-AAGAAACATTCAATTTTAAAACCATTTAT-A
129 TTAACCAAAAATGAA-AAAAATTCAA-TTTAAAATCATTTATAA
* * * * ** * *
15084786 GGATTATTAAACCATTTAAAGGGAGTAACTTGGCTTTCGAATG--TGTGTTGACTATAAATGGAC
1 AG-TTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAG-TGACTATAAATGGAC
* * * * * * *
15084849 TTTTTTTGTAAATGAATGGCTTTCGTTTCACATTTCCT-AATGCAAACAACAAATTATGGTCTGT
64 TTTTCTTCTCAATGGATGGCTTTCGCTTCAC-GTTCCTCAATGCAAACAACAAATTATGATCTGT
*** * * *
15084913 TTT-GGTAGAAAATGAAAAAAAAAAACTCAACTTAAAATCATATATAA
128 TTTAACCA-AAAATG----AAAAAAATTCAATTTAAAATCATTTATAA
* * * * * * * * *
15084960 AATTATAAAACCATTTAAAGTGAGAAACTAGGGTTTTGAAGTCATGAGTGACTATAAATGGATTT
1 AGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * * * *
15085025 TTCTTGTCAATGGATGGCTTTCGCAT-ACGTTTCTCGATGCAAACAACAAATTATGTTCTAG-TT
66 TTCTTCTCAATGGATGGCTTTCGCTTCACGTTCCTCAATGCAAACAACAAATTATGATCT-GTTT
** * *
15085088 TAATAAAAAAT-AAATGAAAATTAAAGTTAAAATCATTTATAA
130 TAACCAAAAATGAAA--AAAATTCAATTTAAAATCATTTATAA
* * ** * * *
15085130 A-TTATAAATCCAGTTAAAGCGAGTAATTACGCTTTCGAAGGCATGAGTGACTATAGATGGAC-C
1 AGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * ** * **
15085193 TTCATGC-CAATGGATGGCTTTCGTTTCACGCTT-CTTGATACAAACATTAAATTATGATCT-TT
66 TTC-TTCTCAATGGATGGCTTTCGCTTCACG-TTCCTCAATGCAAACAACAAATTATGATCTGTT
* * *
15085255 TTGAACCAAAAATGAGAAAAATTAAATTTTAAAATCATCTATAA
129 TT-AACCAAAAATGAAAAAAATTCAA-TTTAAAATCATTTATAA
* * * *
15085299 GATTATATAAAACCA-TATAAAGTGAGTAACTAGGCTTTCGAAGGCATTAGTGACTATAAATGGA
1 -AGT-TATAAAACCACT-TAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGA
* * * * * * *
15085363 CTTTTCCTATCAATGGATTGCTTTCGCTT-ACATTTCCTCGATGCAAACAACAAATTATGATATA
63 CTTTTCTTCTCAATGGATGGCTTTCGCTTCAC-GTTCCTCAATGCAAACAACAAATTATGATCTG
** *
15085427 TTTTAACCAAAAATG-AAAAAA-TCAGCTTAAAATTATTTAT-A
127 TTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAA
* * * * * * * *
15085468 AGATTATAAAACTATTTAAAGTGAGTAACTAGACTTTTGAAGGCATGGGTGACTATAAATGAACT
1 AG-TTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * * * *** * *
15085533 TTTCTT-TCCAATAGCA-AGCTTTTGCTTCATGTTTCTTGGTGCAAACAACAAATTTTGATCAGT
65 TTTCTTCT-CAAT-GGATGGCTTTCGCTTCACGTTCCTCAATGCAAACAACAAATTATGATCTGT
* * * *
15085596 TTTAACCAAAAATGATAACAATTTCAATTTAAAATTATTGATAA
128 TTTAACCAAAAATGA-AAAAAATTCAATTTAAAATCATTTATAA
* * * * *
15085640 AGTTATAAAACCACTTAAAGTGAGTAGCAAGGCTTTCGAATGTATGAGTGACTATAAATGAACTT
1 AGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * * * * * *
15085705 TTCTTGTCAATGGATGACTTTCACTTCACATTTCC-CAATTCAAACAACAAGTTATGTTCTGTTT
66 TTCTTCTCAATGGATGGCTTTCGCTTCAC-GTTCCTCAATGCAAACAACAAATTATGATCTGTTT
* * * * * *
15085769 TTACCAAAAATTAAAGAAAATTCAACTGAAAATTATTTACAA
130 TAACCAAAAATGAAA-AAAATTCAATTTAAAATCATTTATAA
* ** * * **
15085811 AGTTATACATTCATTTAAAGCAAGTAACAAGAAATTT-GAAGG-ATTGAGTGACTATAAATGGAC
1 AGTTATAAAACCACTTAAAGCGAGTAACAAG-GCTTTCGAAGGCA-TGAGTGACTATAAATGGAC
* * *** * * *
15085874 TTTTCTTCTCATTGGATGGCTTTCGCTTCACGTTTCTTGGTGCAAACAACAAATTTTGATATGCT
64 TTTTCTTCTCAATGGATGGCTTTCGCTTCACGTTCCTCAATGCAAACAACAAATTATGATCTGTT
* * * *
15085939 TTAACCAAAAATTATAACAATTTCAATTTAAAATAATTTATAA
129 TTAACCAAAAATGA-AAAAAATTCAATTTAAAATCATTTATAA
* * * * *
15085982 AGTTATAAAACCACTTAAAGCGAGTAATAAGGCTTTCGAAGGCATCAATGACTACAAATCGACTT
1 AGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * * * *
15086047 TTC-TCATCAATGGATGGTTTTCGCTTCATGTTTCCT-AATGCAAACAACTAGTAATGATCTGTT
66 TTCTTC-TCAATGGATGGCTTTCGCTTCACG-TTCCTCAATGCAAACAACAAATTATGATCTGTT
* *
15086110 TTTACCAAAAATGAAAGAAAATTCAACTTAAAATCATTTATAA
129 TTAACCAAAAATGAAA-AAAATTCAATTTAAAATCATTTATAA
* * * * **
15086153 AGTTAT-AAACCATTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGACTGAATATAAATAAACTT
1 AGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * * * *
15086217 TTCTTCTCATTGGATGACTTTCAG-TTCACGTTTCTCAATGCAAATAATAAATTATTG-TCTGTT
66 TTCTTCTCAATGGATGGCTTTC-GCTTCACGTTCCTCAATGCAAACAACAAATTA-TGATCTGTT
* *
15086280 TTGACCAAAAATGAAAAAAA-TCTAACTTAAAATCATTTATAA
129 TTAACCAAAAATGAAAAAAATTC-AATTTAAAATCATTTATAA
* * * * * *
15086322 AGTTATAAAACCACTTAAAGTGAGTAATAA-GCTTTTGAAGGCATGAATGACTATATATGGGCTT
1 AGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * * * * * * *
15086386 TTCTTGTCAATGGATGGGTTTTGCTTCACGTTTCCT--AT--TAACATCCAATTATGATTTTTTT
66 TTCTTCTCAATGGATGGCTTTCGCTTCACG-TTCCTCAATGCAAACAACAAATTATGATCTGTTT
* * * *
15086447 TAACAAAAAATGGAAAAAAATTCAATCTAAAGTCATTTGTAA
130 TAACCAAAAAT-GAAAAAAATTCAATTTAAAATCATTTATAA
* * * *
15086489 AGTTAT-AAACCACTTAAAGCGAGTAAGAAGGCTTTTGAAGGCATGAGCGACTATAAATAGACTT
1 AGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * * * ** * * *
15086553 TTGTTATCAATGGATGGCTTTCGCTTCATGTTTCTTGATGAAAATAACAAATTATCATCTG-TTT
66 TTCTTCTCAATGGATGGCTTTCGCTTCACGTTCCTCAATGCAAACAACAAATTATGATCTGTTTT
* * * * *
15086617 AACCAAAAAAGAGAAACATTCAATTTTCAAACCATTTAT-A
131 AACCAAAAATGAAAAAAATTCAA-TTTAAAATCATTTATAA
* * * * * *
15086657 GGATTATAAAACCATTTAAAGGGAGTAACTAGGCTTTCAAAGGCATG-TTGACTATAAATGGACT
1 AG-TTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * * *
15086721 TTTCTTGTCAATGGATGGCTTTCG-TTCCACATTTCC-CAACGCAAACAACAAATTATGGTCTCT
65 TTTCTTCTCAATGGATGGCTTTCGCTT-CAC-GTTCCTCAATGCAAACAACAAATTATGATCTGT
* *
15086784 TTTAGCCAAAAATGAAAAAAAATCTCAACTTAAAATCATTTAT-A
128 TTTAACCAAAAATG-AAAAAAAT-TCAATTTAAAATCATTTATAA
* * * * * * *
15086828 AGATTATAAAGCCATTTAAACCGAGCAACTAGGCGTTCGAAGCCATGAGTGACTATAAATGGACT
1 AG-TTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * * * * *
15086893 TTTCTTATCAATGAATGACTTTCGCTT-ATGTTTCC-CAATGCAAACAATAAATTATTATCTATT
65 TTTCTTCTCAATGGATGGCTTTCGCTTCACG-TTCCTCAATGCAAACAACAAATTATGATCTGTT
** * ** *
15086956 TTATTTC-AAAATGAAAGAAAACTCAATTTAAAATTGTCTCA-AA
129 TTA-ACCAAAAATGAAA-AAAATTCAATTTAAAATCAT-TTATAA
* * * *
15086999 AGTTATAACACCACTTAAAGCGAGTAA-ATAGGCTTTCAAAGGCATGAGTGGCTACAAATGGACT
1 AGTTATAAAACCACTTAAAGCGAGTAACA-AGGCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * ** * *
15087063 TTTCTTGC-CAATGGATGGCTTTCTCTTCACGTTTCTC-ATGCAAACAAGTAGTTATGATCTATT
65 TTTCTT-CTCAATGGATGGCTTTCGCTTCACGTTCCTCAATGCAAACAACAAATTATGATCTGTT
* * * *
15087126 TTTACCAAAAAAGAAAGAAAATTGAACTTAAAATCATTTATAA
129 TTAACCAAAAATGAAA-AAAATTCAATTTAAAATCATTTATAA
* * * *
15087169 AGTTATAAAACTATTTAAAGCGAGTAACAAGGCTTTCGTAGGCATGAGTGACTATAAATGAACTT
1 AGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* ** * * * *
15087234 TTCTTCTCATTGGATACCTTTCGCATCACGTTTCC-CAATGCAAACATCTAATTATGATATGTTT
66 TTCTTCTCAATGGATGGCTTTCGCTTCACG-TTCCTCAATGCAAACAACAAATTATGATCTGTTT
*** * * * *
15087298 TAACTTGAGATGAAAAATATTTTGAA-TTAAAATCATTAAT-A
130 TAACCAAAAATGAAAAA-A-ATTCAATTTAAAATCATTTATAA
* * ** * * * *
15087339 AGATTAT-AAACCCCTTTAAAACGAGTAACTCGACTTTCGAAGGCACGAGTAATTATAAATGGAC
1 AG-TTATAAAACCAC-TTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGAC
* * * * * *
15087403 TTTTCTTTTCATTGAATGGGTTTTGCTTCACGTTTCC-CCATGCAAACAACAAATTATGATCTGT
64 TTTTCTTCTCAATGGATGGCTTTCGCTTCACG-TTCCTCAATGCAAACAACAAATTATGATCTGT
* * *
15087467 TTTACCCAAAAATGATAAAGAATTCAATTTAAAATCAGTTATAA
128 TTTAACCAAAAATGA-AAAAAATTCAATTTAAAATCATTTATAA
** * * * *
15087511 AGTTATAAAACCACTTAAAATGAGTAATAAGGCTTTCGAAGGTATAAGTGACTATAAATGAACTT
1 AGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * * * * * *
15087576 TTC-TCATCAATGGATGGCTTTTGCTTCATGTTTCC-CAATCCAAGCATCCAATTATGATATGTT
66 TTCTTC-TCAATGGATGGCTTTCGCTTCACG-TTCCTCAATGCAAACAACAAATTATGATCTGTT
* * *
15087639 TAAACCAAAAATAAAAAAAATTCAATTTAAAATTATTTATAA
129 TTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAA
* * *
15087681 AGTTATAAAACCACTTAAAGCGAGTAACAAAGCTTTCAAAGGCATGAGTGACTATAAATAGACTT
1 AGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* ** * * * **
15087746 TTCTTATCAATGGAAAGCTTTTGCTTCACATTTCTCAATGCAAACAACAAATTATCTTCTGTTTT
66 TTCTTCTCAATGGATGGCTTTCGCTTCACGTTCCTCAATGCAAACAACAAATTATGATCTGTTTT
* **
15087811 AACCAAAAATGACAACCATTCAATTTAAAATCATTTA
131 AACCAAAAATGAAAAAAATTCAATTTAAAATCATTTA
15087848 AAGCAAGTTA
Statistics
Matches: 4614, Mismatches: 1002, Indels: 355
0.77 0.17 0.06
Matches are distributed among these distances:
165 2 0.00
166 47 0.01
167 84 0.02
168 170 0.04
169 343 0.07
170 1599 0.35
171 1661 0.36
172 413 0.09
173 223 0.05
174 67 0.01
175 5 0.00
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.33
Consensus pattern (170 bp):
AGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
TTCTTCTCAATGGATGGCTTTCGCTTCACGTTCCTCAATGCAAACAACAAATTATGATCTGTTTT
AACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAA
Found at i:15088568 original size:171 final size:170
Alignment explanation
Indices: 15088266--15091717 Score: 2938
Period size: 171 Copynumber: 20.3 Consensus size: 170
15088256 CTGCTTGATT
* * * * * *
15088266 AAACATCAAATTATCATTTGTTTTAACCAAAATTGAAAAAAAAATCAGTTTAAAATTATTTATAA
1 AAACATCAAATTATGATCTGTTTTAACCAAAAATG-AAAAAAATTCAATTTAAAATCATTTATAA
** ** * * * *
15088331 -AGTTATAAAACCACTTAAAGCAAGTAA-TAAGGAATTCAAAGGCATTAGTCACTATAAATAGAC
65 GA-TTATAAAACCACTTAAAGTGAGTAACT-AGGCTTTCGAAGGCATGAGTGACTATAAATGGAC
* * * ***
15088394 TTTTTTTGTCAACGGATGGCTTTCGCTTGACT-TTTCTTGATGC
128 TTTTCTTGTCAATGGATGGCTTTCGCTTCA-TGTTTCCCAATGC
* * * * *
15088437 AAACATCAAATTATCATCTGTTTTAACCAAAAATGAGAAAAATTTAATTTTAAAACCACTTATAA
1 AAACATCAAATTATGATCTGTTTTAACCAAAAATGAAAAAAATTCAA-TTTAAAATCATTTATAA
* * * * * * *
15088502 GTTTATAAATCCA-TTAAAAGTGAGTAACTAGTCTTTCAAAGTCATGATTGACGATAAATGGACT
65 GATTATAAAACCACTT-AAAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * * *
15088566 TTTCTTGTCAATTGATGGCTTTCTCTTTATGATTCCCCATGC
129 TTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATGC
* *
15088608 AAACAAT-AAATTATGATATGTTTTAACCAAAAATGAAAGAAAATTCAACTTAAAATCATTTATA
1 AAAC-ATCAAATTATGATCTGTTTTAACCAAAAATGAAA-AAAATTCAATTTAAAATCATTTATA
* * * ** * * * * ** *
15088672 AGATTATAAATCAATTTAAAGCAAGCAATTAGGCTTTCAAAGGCATGAGTAACTATAAATAAACC
64 AGATTATAAAACCACTTAAAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * *
15088737 TTTCTTGTCAATGGATGGCTTTCACTTCATGTTTCTCGATGC
129 TTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATGC
* * * *
15088779 AAACAACAAATTATGATCTGTTTTAGCCAAAAAGGAAAAATAATTCAATTTGAAATCATTTATAA
1 AAACATCAAATTATGATCTGTTTTAACCAAAAATGAAAAA-AATTCAATTTAAAATCATTTATAA
* * * *
15088844 -AGTTATAAAACCACTTAAAGTGAGTAACGT-GGCTTTTGAACGCATAAGTGACTATAAAT-CAG
65 GA-TTATAAAACCACTTAAAGTGAGTAAC-TAGGCTTTCGAAGGCATGAGTGACTATAAATGGA-
* * * * * * * *
15088906 CTCTTCTTATAAATTGATAGCTTTCGTTTCACGTTTCCCATTGC
127 CTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATGC
** * * * * * *
15088950 AAACATCTTATTATGATTTGTTTTATCTAGAAATGAAAAAATATT-GATTTAAAACCATTTATAA
1 AAACATCAAATTATGATCTGTTTTAACCAAAAATGAAAAAA-ATTCAATTTAAAATCATTTATAA
**** ** * *
15089014 GATTATAAAATTGTTTAAAGTGAGTAACTAGGCTTTTAAAGGCATGAATGACTATAAATTGACTT
65 GATTATAAAACCACTTAAAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* *
15089079 TTCTTGTCAATAGAT-GCGTTTCGCTT-ATGTTTCCTAATGC
130 TTCTTGTCAATGGATGGC-TTTCGCTTCATGTTTCCCAATGC
* * * *
15089119 AAACAACAAATTTTGATCTGTTTTAACAAAAAATGAAAGAAAATTTC-ACTTAAAATCATTTATA
1 AAACATCAAATTATGATCTGTTTTAACCAAAAATGAAA-AAAA-TTCAATTTAAAATCATTTATA
* * * * *
15089183 ATATTACAAAACTACGTAAAGCGAGTAA-TAAGGCTTTCGAAGGCATGAGTGACTATAAATGGAC
64 AGATTATAAAACCACTTAAAGTGAGTAACT-AGGCTTTCGAAGGCATGAGTGACTATAAATGGAC
** * * * *
15089247 TTTTCTCATCAATGGATGGCTTTTGCTTCATGTTACCTAATGT
128 TTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATGC
* * * * *
15089290 AAGCATCCAATTATG---TGTTTTAACCCAAAATGAAAAAAAAATTGAATCTAAAATCATTTATA
1 AAACATCAAATTATGATCTGTTTTAACCAAAAATG--AAAAAAATTCAATTTAAAATCATTTATA
* * * * *
15089352 A-AGCTATAAAACCACTTCAAGTGAGTAA-TAAGGCTTTTGAAGGCATAAGTGACTATAAATAGA
64 AGA-TTATAAAACCACTTAAAGTGAGTAACT-AGGCTTTCGAAGGCATGAGTGACTATAAATGGA
* * * **
15089415 CTTTTCTTGTCAATGGATAGTTTTTGCTTCACATTTCCCAATGC
127 CTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATGC
* * * * * * *
15089459 AAACATCAAATTATCATCTATTTTAACCAAAAATGAGAAACATTCAATTTTAAGACCATTTATAG
1 AAACATCAAATTATGATCTGTTTTAACCAAAAATGAAAAAAATTCAA-TTTAAAATCATTTATAA
** ** * * * * * * *
15089524 GATTACGAAATGAGTTAAAATGAGTAAGTGGGCTTTCTAAGACATGA-TAACTATAAAATGGACT
65 GATTATAAAACCACTTAAAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGACTAT-AAATGGACT
** * * *
15089588 TTTCTTGTCAATAAATGGCTTTTGCTTCATGTTTTCCATTGC
129 TTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATGC
* * * * * * *
15089630 AATCAACAAATTATGGTATGTTTTAGCCAAAAATGAAAAAAAACTCAAGTTAAAATCATTTATAA
1 AAACATCAAATTATGATCTGTTTTAACCAAAAATG-AAAAAAATTCAATTTAAAATCATTTATAA
* * * * * * *
15089695 GATTGTAAAACTATTTAAAGTGAGCAACTAAGCTTTCGAAGCCA--A--GA--GTAAATGGACTT
65 GATTATAAAACCACTTAAAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * *
15089754 TTCTTGTCAATAGATGGCTTTTGCTTCATATTTCCCAATGC
130 TTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATGC
* * * * **
15089795 AAACATCAAATTATGATTTTTTTTAACC--AAA--AAAAAAACTCAATTTAAATTCAACTATAA-
1 AAACATCAAATTATGATCTGTTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAG
* * * * ** ** *
15089855 AGTAAAAAATCACTTAAAGCGAGTAA-TAAGGCTTTTAAAGGCATGAGTGACTATAAATATACTA
66 ATTATAAAACCACTTAAAGTGAGTAACT-AGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * * * *
15089919 TTCTTGTCAATAGATGACTTTTGCTTCATGTTTTCCAATGT
130 TTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATGC
* * * * * *
15089960 AAACATCCAATTATGATCTGTTTTTACCAAAAATGAAAAACAAATGAGTTTAAAATCATTTAGAA
1 AAACATCAAATTATGATCTGTTTTAACCAAAAATGAAAAA-AATTCAATTTAAAATCATTTATAA
* * * * * *
15090025 -AGTTATAAAATCACTTAAAGAGAGTAA-TAGGGCTTCCGAAGGCATAAGTCACTCTAAATGGAC
65 GA-TTATAAAACCACTTAAAGTGAGTAACTA-GGCTTTCGAAGGCATGAGTGACTATAAATGGAC
* * * **
15090088 TTTTCTTGTCAATGGATAGCTTTCTCTTTATGTTTCCTGATGC
128 TTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATGC
* * * * ** * * *
15090131 AAACATCAACTCATCATCTGTTTTTAGAAAAAATGAGAAAAATTCAGTTTTAAAA-CTGTTTATA
1 AAACATCAAATTATGATCTGTTTTAACCAAAAATGAAAAAAATTCA-ATTTAAAATC-ATTTATA
* * ** ** * ** * * *
15090195 GGATTATAAAACCATTTAAAACGTTTAACAAGGCTTTTAAAGGCATGATTGACGATAAATTGACT
64 AGATTATAAAACCACTTAAAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * *
15090260 TTTCTTGTCAATGGATGGCTTGCTCTTCATGATTCCCTATGC
129 TTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATGC
* * * *
15090302 AAATAAT-AAATTATAACCTGTTTTAACCAAAAATGAAAGAAAATTCAACTTAAAATCATTTATA
1 AAA-CATCAAATTATGATCTGTTTTAACCAAAAATGAAA-AAAATTCAATTTAAAATCATTTATA
* * * * * *
15090366 AGATTATAAATCTATTTGAAA-TGAGTAACTAGGCTTTCGAAGGCGTGAATGACTATAAATGGAT
64 AGATTATAAAACCACTT-AAAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGAC
* * * * ***
15090430 TTTTCTTGTCAATGGATGGTTTTCACTTCACGATTCTTGATGC
128 TTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATGC
* * * *
15090473 AAACAACAAATTGTGAT-TTTTTTAACTAAAAATGAAAGAAAATTCAA-TTAAAATCATTTATAA
1 AAACATCAAATTATGATCTGTTTTAACCAAAAATGAAA-AAAATTCAATTTAAAATCATTTATAA
*
15090536 GATTATAAAACCATTTAAAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAAT-GAGCT
65 GATTATAAAACCACTTAAAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGA-CT
* * * * ***
15090600 TGTCTTTTCAATGGATGGCTTTCACTACATGTTTCTGGATGC
129 TTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATGC
* * * * * *
15090642 AAACAACAAATTTTGATATGTTTTAACCAAAAATGATAACAATTTCAATTTAAAATAATTTATAA
1 AAACATCAAATTATGATCTGTTTTAACCAAAAATGA-AAAAAATTCAATTTAAAATCATTTATAA
* * ** * *
15090707 -ATTTATCAAACCACTTAAAGCGAGTAAGAAGGTTTTCGAAGGCATGAGTGACTACAAATGGA-T
65 GA-TTATAAAACCACTTAAAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * * *
15090770 TTTCTTTGTCAATGGATGGCTTTTGTTTCACGTTTCTCAATTC
129 TTTC-TTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATGC
* * * * * *
15090813 AAACAACTAATTATGATCTGTTTTTACCAAAAATAAAAGAAAATTCAACTTAAAATCATTTAAAA
1 AAACATCAAATTATGATCTGTTTTAACCAAAAATGAAA-AAAATTCAATTTAAAATCATTTATAA
* * * ** * *
15090878 GATTATAAATCCATTTATAGCAAGTAACTAGGCTTTCGAAGGTATGAGTGACTATAAATGCACTT
65 GATTATAAAACCACTTAAAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * *
15090943 TTTTTGTCAATGGATAGCTTTTGCTTCATGTTTCCCAATGC
130 TTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATGC
* * * * * *
15090984 AAGCAACAAATTATGATCTGTTTTAGCCAAAAAGGAAAAAAA-TCAATTTAAACTAATTTATAA-
1 AAACATCAAATTATGATCTGTTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAG
* * * *
15091047 AGTTATAAAACCACTTAAATTGAGT-AGTAGGGCTTTCGAA-GCTATAAGTCACTATAAATGGAC
66 A-TTATAAAACCACTTAAAGTGAGTAACTA-GGCTTTCGAAGGC-ATGAGTGACTATAAATGGAC
* * * **
15091110 TTTTCTTGTCAATGGATGACTTTTGCTTAACATTTCCCAATGC
128 TTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATGC
* * * * * * * *
15091153 AAACATCAAAGTATCATCTGTTTTGACAAAAAATGAGAAAAATTCAGTTTTAAAACCATTTATAG
1 AAACATCAAATTATGATCTGTTTTAACCAAAAATGAAAAAAATTCA-ATTTAAAATCATTTATAA
** * *
15091218 GATTATAAAACCA-TTAGAAGCAAGTAACTAGGCTTTCGAAGGCATGACTGA-TGATAAATGAAC
65 GATTATAAAACCACTTA-AAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGACT-ATAAATGGAC
* * *** *
15091281 TTTTCTTGTCAATGGGTGGATTAATCTTCATGATTCCCAATGC
128 TTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATGC
* * * * *
15091324 AAACAGT-AAATTATGATCTCTTTTAATC-AAAATGAAAGAAAATTTAACTTAGAATCATTTATA
1 AAACA-TCAAATTATGATCTGTTTTAACCAAAAATGAAA-AAAATTCAATTTAAAATCATTTATA
* * ** * * *
15091387 AGATTATAAATCCATTTAAAGCAAGTAACTAGGCTTTCGAAGGCATGAGTGACTATGATTGAACT
64 AGATTATAAAACCACTTAAAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACT
* **
15091452 TTTTTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTGATGC
129 TTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATGC
* * * * *
15091494 AAACAACAAATTATGATCTGTTTTAGCTAAAAAGGAAAAAAATGCAATTTAAAATCATTTATAA-
1 AAACATCAAATTATGATCTGTTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAG
* * * **
15091558 AGTTATAAAACCACTTAAAGTGAGTAAC-ATGGCTTTTGAAGGCATGAGTGAGTAGAAATCTACT
66 A-TTATAAAACCACTTAAAGTGAGTAACTA-GGCTTTCGAAGGCATGAGTGACTATAAATGGACT
* ** * * *
15091622 TTTCTTGTAAATGGATAACTTTCGTTTCACGTTTCCTAATGC
129 TTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATGC
* * * * *
15091664 AAACATCCAATTATGATTTGTTGTAACTAGAAATGAAAAAAATTTCAATTTAAA
1 AAACATCAAATTATGATCTGTTTTAACCAAAAATGAAAAAAA-TTCAATTTAAA
15091718 TTATGATTTG
Statistics
Matches: 2632, Mismatches: 560, Indels: 178
0.78 0.17 0.05
Matches are distributed among these distances:
158 1 0.00
159 29 0.01
160 25 0.01
161 1 0.00
163 5 0.00
165 138 0.05
166 1 0.00
167 3 0.00
168 29 0.01
169 422 0.16
170 576 0.22
171 1332 0.51
172 70 0.03
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (170 bp):
AAACATCAAATTATGATCTGTTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAG
ATTATAAAACCACTTAAAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTT
TCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATGC
Found at i:15092122 original size:172 final size:170
Alignment explanation
Indices: 15091714--15094973 Score: 1529
Period size: 171 Copynumber: 19.3 Consensus size: 170
15091704 AATTTCAATT
* * * * * * *
15091714 TAAATTATGATTTGTTGTAACCAAAAGTG-AAAGAAATTTC-ACTTAAAATCATTTATAAGATTG
1 TAAATTATGATCTGTTTTAGCCAAAAATGAAAAAAAAATTCAACTTAAAATCATTTATAAGATTA
* * * * *
15091777 TAAAACCATTTAAAGCGAGCAACAAGGCTTTCGAATGCATGAGTGACTACAAATGGGCTTTTCCT
66 TAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTT-CT
* *
15091842 TTCAATGGATGGCTTTCGTTTCACATTTCCCAATGC-AACAAA
130 CTCAATGGATGGCTTTCGCTTCACA-TTCCCAATGCAAAC-AA
* * * * * *
15091884 CAAATTATGGTCTGTTTTAGCCAAAAATGAAAAAAAAAACTCTACTTAAATTCATTTATGAGATT
1 TAAATTATGATCTGTTTTAGCCAAAAATG-AAAAAAAAATTCAACTTAAAATCATTTATAAGATT
* * * * * *
15091949 ATAAAACCATTTAAAGCGAGAAACT-AGGCTATCGTAGACATGAGTGAATATAAATTGACTTTTC
65 ATAAAACCATTTAAAGCGAGTAA-TAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTC
* * * *
15092013 TCTCAAAAGGAAGGCTTTTGCTTCACATTCCCAAAGCAAACAA
129 TCTC-AATGGATGGCTTTCGCTTCACATTCCCAATGCAAACAA
* * * **
15092056 TAGATTGTTATCTGTTTT-GGTAAAATATGAAAAAAACAATTCAACTTAAAATCATTTATAAGAT
1 TAAATTATGATCTGTTTTAGCCAAAA-ATGAAAAAAA-AATTCAACTTAAAATCATTTATAAGAT
* * * * * *
15092120 TATAGAACCGTTTAAAGCGAGTAATCAGGCTTTTGAAGGCATTAGTGACTATAAATGCACTTTTC
64 TATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTC
* * * * * **
15092185 TCCTCATTGGATTGATTTCACTTCACGTTTCCTGATGCAAACAA
129 T-CTCAATGGATGGCTTTCGCTTCAC-ATTCCCAATGCAAACAA
* * * *
15092229 TAAATTATGATATGTTTTAACCAAAAGTGAAAAAAAAATTCAATTTAAAATCATTTATAA-AGTT
1 TAAATTATGATCTGTTTTAGCCAAAAATGAAAAAAAAATTCAACTTAAAATCATTTATAAGA-TT
* *
15092293 ATAAAACCACTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTAT
65 ATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTT-C
* * * **
15092358 TGTCAATGGATGGCTTGCGCTTCACGTTTCCTGATGCAAAC-A
129 TCTCAATGGATGGCTTTCGCTTCAC-ATTCCCAATGCAAACAA
* * * * * ** * * *
15092400 TCAAATTATCATCTGCTTTAACAAAAAAT--TACCAACATTCAATTTTAAAA-CTATTTA-AGGC
1 T-AAATTATGATCTGTTTTAGCCAAAAATGAAAAAAAAATTCAA-CTTAAAATC-ATTTATA--A
* * * * * * * * ** * * *
15092461 GAGTTAGT-AGA-C-TTTCAAAG-GCA-TGAT--GACTAT-AAATGAAT--TTTTCTTGTGAGTG
61 GA-TTA-TAAAACCATTT-AAAGCG-AGTAATAAGGCTTTCGAAGGCATGAGTGAC-TATAAATG
** * * * ** *
15092516 GA--TGGCT-T---T---T-GC-TTCACATTTTACAAT-GTAA-AC-AACAAA
121 GACTTTTCTCTCAATGGATGGCTTTCGC--TTCACATTCCCAATGCAAAC-AA
* * * * ** ** * * ** * * *
15092555 TTATTGTATGTTTTGGCTAAAAATA-AAAAAACTCAACTTAAAATCATCTATAAGATTATAAAAC
1 TAAAT-TATGATCT-G-T---TTTAGCCAAAAATGAA---AAAA--AAAT-TCA-ACT-TAAAAT
* ** * * *
15092619 CATTTA-AAGA-GA-GCAACTAGGCTTT----CGAAGTTATAAGTGAC--TGGAA---AT--G-G
52 CATTTATAAGATTATAAAACCA---TTTAAAGCG-AGTAATAAG-G-CTTTCGAAGGCATGAGTG
** * * * ** **
15092669 AC------T----TTTCATGTCAATAGATAGCTTTTC-CTTCATGTTTCCTGATGCAAAC-A
111 ACTATAAATGGACTTTTCTCTCAATGGATGGC-TTTCGCTTCA-CATTCCCAATGCAAACAA
* * * * * * * *
15092719 TCAAATTATGATTTGTTTTAACCAAAAAT-AAAAAAAAGTTTAATTTAAATTAATCTATAA-AGT
1 T-AAATTATGATCTGTTTTAGCCAAAAATGAAAAAAAAATTCAACTTAAAATCATTTATAAGA-T
* * * * * * * * * *
15092782 AATCAAACTAATTAAAGTGAGTAACAAGTCTTTCGAAGGCATGAGTGATTATAAATAGACTCTTC
64 TATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTC
* * *** *
15092847 T-TGCCAATGGATGGC-TTCTGGTTCACGTTTCCCAACAAAAACAT
129 TCT--CAATGGATGGCTTTC-GCTTCAC-ATTCCCAATGCAAACAA
* * * * * *
15092891 TCAATTATGAT-TTTTTTAACCAAAAA-G-GAAAAAAATTTAGCTTAAAATCATTTATAA-AGTT
1 TAAATTATGATCTGTTTTAGCCAAAAATGAAAAAAAAATTCAACTTAAAATCATTTATAAGA-TT
* * * * * * * * *
15092952 ATAAAACCACTTAAAGCAAGTAACAGGGATTTCGAAGGCATGAGTCACTATAAATAGAATGTTCT
65 ATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTC-
* * ** **
15093017 TGTCAATGGATGGCTTTCGCTTGATGTTTCCTTATGCAAAC-A
129 TCTCAATGGATGGCTTTCGCTTCA-CATTCCCAATGCAAACAA
* * * * * ** ** * * *
15093059 TCAAATTATCATATATTTTAACAAAAAATG--AGTAAAATTCAGTTTTCAGA-CTATTTATAGGA
1 T-AAATTATGATCTGTTTTAGCCAAAAATGAAAAAAAAATTCA-ACTTAAAATC-ATTTATAAGA
* * * * * *
15093121 TTATAAAACTATTTAAAGCAAGCAACT-AGACTTCCAAAGGCATGA-TAGA-TGATAAATGGACT
63 TTATAAAACCATTTAAAGCGAGTAA-TAAGGCTTTCGAAGGCATGAGT-GACT-ATAAATGGACT
* * * *
15093183 TCTCTTGTCAATGGATGGCTTGCTCTTCACAATTCCCAATGCAAACAA
125 TTTC-TCTCAATGGATGGCTTTCGCTTCAC-ATTCCCAATGCAAACAA
* * ** *
15093231 TAAATTATGATCTGTTGTAACCAAAAATG-AATGAAAATTCAACCTAAAATCATTTATAAGATTA
1 TAAATTATGATCTGTTTTAGCCAAAAATGAAAAAAAAATTCAACTTAAAATCATTTATAAGATTA
* * *
15093295 TAAATCCATTTAAAGCAAGTAACT-AGGCTTTTGAAGGCATGAGTGACTAT-AATGGACTTTTCC
66 TAAAACCATTTAAAGCGAGTAA-TAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTT-C
* * * * * * **
15093358 TGTTAATAGATGGTTTTCACTTCACGTCTCTTAATGCAAACAA
129 TCTCAATGGATGGCTTTCGCTTCACAT-TCCCAATGCAAACAA
* * * * * *
15093401 CAATTTATTAT-TGTTTTAGCCTAAAA-G--AAAAAAACTCAATTTAAAATCATTTATAA-AGTT
1 TAAATTATGATCTGTTTTAGCCAAAAATGAAAAAAAAATTCAACTTAAAATCATTTATAAGA-TT
* * * * **
15093461 ATAAAACCACTTAAAGCGAGTAACATGGCTTTCAAAGGCATGAGTGACTATAAATTTACTTTTCT
65 ATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTC-
* * ** * *
15093526 TGTCAATGGATAGCTTTCGCTTCATGTTTCCCAATG-TAACCA
129 TCTCAATGGATGGCTTTCGCTTCA-CATTCCCAATGCAAACAA
* * * * * *
15093568 TCCAATTATGATTTGTTTTAGCTAGAAATG---AAAAAATT-GATTTAAAATCATTTATAAGATT
1 T-AAATTATGATCTGTTTTAGCCAAAAATGAAAAAAAAATTCAACTTAAAATCATTTATAAGATT
* * * ** *
15093629 AAAAAATCATTTAAAGTGAGTAACT-AGGCTTTCGAAGGCATGAGTGTTTATAAATTGACTTTTC
65 ATAAAACCATTTAAAGCGAGTAA-TAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTC
* * * ** * *
15093693 TTTTC-A---ATGCCTTTTGCTT-ATGTTTCTCGATGCAAACAA
129 -TCTCAATGGATGGCTTTCGCTTCA-CATTCCCAATGCAAACAA
* * * * * *
15093732 CAAATTATGATATGTTTTAACCAAAAAATG-AAAGAAAATTCCACTTTAAATCATTTAT-AGCAT
1 TAAATTATGATCTGTTTTAGCC-AAAAATGAAAAAAAAATTCAACTTAAAATCATTTATAAG-AT
* * * * * *
15093795 TATAAAACCATTTAAAGCGAGCAACT-AGGCTTTCAAAGCCATCAGTAACTATAAGTGGACTTTT
64 TATAAAACCATTTAAAGCGAGTAA-TAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTT
* * ** * *
15093859 CTTGCCCAA-GGATGGCTTTCACTTCATGTTTCCTAATGCAAATAA
128 C-T-CTCAATGGATGGCTTTCGCTTCA-CATTCCCAATGCAAACAA
* * *
15093904 CAAATTATGATTTGTTTTAGCTAAAAATG-AAAAAAAATTCAACTTAAAATCATTTATAAGATTA
1 TAAATTATGATCTGTTTTAGCCAAAAATGAAAAAAAAATTCAACTTAAAATCATTTATAAGATTA
** *
15093968 TAAAA-CAGTTTAAAGCGAGTAACT-AGGCTTTTAAAGGCATGAGTGACTATAAATAGACTTTTT
66 TAAAACCA-TTTAAAGCGAGTAA-TAAGGCTTTCGAAGGCATGAGTGACTATAAATGGAC-TTTT
* * * *
15094031 TTCTCATTGGATGGCTTTCGCTTCACGTTTCCAAATGCAAACAA
128 CTCTCAATGGATGGCTTTCGCTTCAC-ATTCCCAATGCAAACAA
* * *
15094075 TAAATTATAATATGTTTTAACCAAAAATG--AAAAAAATTCAAAC-TAAAATCATTTATAA-AGT
1 TAAATTATGATCTGTTTTAGCCAAAAATGAAAAAAAAATTC-AACTTAAAATCATTTATAAGA-T
* * *
15094136 TATAAAACCACTTAAAGTGAGTAATAAGGCTTTCGAAGGTATGAGTGACTATAAATGGACTTTTC
64 TATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTC
* * ** *
15094201 TTGTCGATGGATGGCTTTCGCTTCATGTTTTCCAATGCAAACAA
129 -TCTCAATGGATGGCTTTCGCTTCA-CATTCCCAATGCAAACAA
* * * * * *
15094245 CAAATCATCATCTGTTTTAGCCAAAAATGAAAAAAAAAACTCAACTCAAAATCATCTATAAGATT
1 TAAATTATGATCTGTTTTAGCCAAAAATG-AAAAAAAAATTCAACTTAAAATCATTTATAAGATT
* * * * *
15094310 ATAAAACC-TTCAAAGCGAGCAACT-AGGCTTTCGAAGCCATGAGTGACTGTAAATGAACTTTTC
65 ATAAAACCATTTAAAGCGAGTAA-TAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTC
* * *
15094373 TTGTCAATGGATGGC-TTCTGCTT-ACATTTCTCGAT-CTAAACAA
129 -TCTCAATGGATGGCTTTC-GCTTCACA-TTCCCAATGC-AAACAA
* * * * * *
15094416 CAAATTATGATCTATTTTAACTAAAAATG-AAAGAAAATTCAACTTAAAATCATTT-TGCAAGAC
1 TAAATTATGATCTGTTTTAGCCAAAAATGAAAAAAAAATTCAACTTAAAATCATTTAT--AAGAT
* * * * * *
15094479 TATAAATCCATTTAAAGCGAGTAACT-ACGCTTTCGAAGCCATAAGTGACTATAACTAGACTTTT
64 TATAAAACCATTTAAAGCGAGTAA-TAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTT
* * * * *
15094543 CTTGTCGATGGATGGCTTTTGCTTCACATGTCCTAATGAAAACAA
128 C-TCTCAATGGATGGCTTTCGCTTCACAT-TCCCAATGCAAACAA
* * * * * * *
15094588 CAAATTATGATTTG-TTTAACCAAAAATG--AAAAAAACTCAATTTAAAATCATGTATAA-AGT-
1 TAAATTATGATCTGTTTTAGCCAAAAATGAAAAAAAAATTCAACTTAAAATCATTTATAAGATTA
* ** * *
15094648 T-AAA-CACTTAAATTGAGTAACAAGGCTTTCGAAGGCATCAGTGACTATAAATGGACTTTTCTT
66 TAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTC-T
* * ** *
15094711 TTCAATTGATGGCTTTCGCTT-ATGTTTCCTAATGCAAACAA
130 CTCAATGGATGGCTTTCGCTTCA-CATTCCCAATGCAAACAA
* * * * * * * *
15094752 TAAATTATGATTTGTTTTAACAAAAAATG-AAAGAAAACTCCAC-TAAATATAATTCATAAGATT
1 TAAATTATGATCTGTTTTAGCCAAAAATGAAAAAAAAATTCAACTTAAA-ATCATTTATAAGATT
** * * * *
15094815 ATAAAATTATTTAAAGTGAGTAACT-AGGCTTTTGAAGGCATGAGTGAATATAAATTGACTTTTC
65 ATAAAACCATTTAAAGCGAGTAA-TAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTC
* * **
15094879 TTGTCGATGGATGGCTTT-GCTTCATGTTTCCCAATGCAAACAA
129 -TCTCAATGGATGGCTTTCGCTTCA-CATTCCCAATGCAAACAA
* * *
15094922 TAAATTGTGATTTGTTTTAGCCAAAAATGAAAAAAGAAACTCAACTTAAAAT
1 TAAATTATGATCTGTTTTAGCCAAAAATGAAAAAA-AAATTCAACTTAAAAT
15094974 GTAAAGCCTA
Statistics
Matches: 2385, Mismatches: 513, Indels: 382
0.73 0.16 0.12
Matches are distributed among these distances:
151 11 0.00
152 6 0.00
153 6 0.00
154 21 0.01
155 15 0.01
156 9 0.00
157 8 0.00
159 12 0.01
160 10 0.00
162 5 0.00
163 34 0.01
164 67 0.03
165 96 0.04
166 40 0.02
167 162 0.07
168 147 0.06
169 193 0.08
170 413 0.17
171 516 0.22
172 432 0.18
173 176 0.07
174 6 0.00
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (170 bp):
TAAATTATGATCTGTTTTAGCCAAAAATGAAAAAAAAATTCAACTTAAAATCATTTATAAGATTA
TAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTC
TCAATGGATGGCTTTCGCTTCACATTCCCAATGCAAACAA
Found at i:15094216 original size:170 final size:169
Alignment explanation
Indices: 15092445--15094956 Score: 2179
Period size: 171 Copynumber: 14.8 Consensus size: 169
15092435 CATTCAATTT
* * * * * * * *
15092445 TAAAACTATTTAAGGCGAGTTAGTAGACTTTCAAAGGCATGA-TGACTATAAATGAATTTTTCTT
1 TAAAACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTT
* * * * * * * **
15092509 GTGAGTGGATGGCTTTTGCTTCACAT-TTTAC-AATGTAAACAACAAATTATTG-TATGTTTTGG
66 GTCAATGGATGGCTTTCGCTT--CATGTTTCCTAATGCAAACAATAAATTA-TGATTTGTTTTAA
* * *
15092571 CTAAAAAT-AAAAAAACTCAACTTAAAATCATCTATAAGATTA
128 CCAAAAATGAAAAAAATTCAAC-TAAAATCATTTATAAGATTA
* * ** * ** *
15092613 TAAAACCATTTAAAGAGAGCAACTAGGCTTTCGAAGTTATAAGTGACTGGAAATGGACTTTTCAT
1 TAAAACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTT
* * *
15092678 GTCAATAGATAGCTTTTC-CTTCATGTTTCCTGATGCAAAC-ATCAAATTATGATTTGTTTTAAC
66 GTCAATGGATGGC-TTTCGCTTCATGTTTCCTAATGCAAACAAT-AAATTATGATTTGTTTTAAC
* * * * * * *
15092741 CAAAAATAAAAAAAAGTTTAATTTAAATTAATCTATAA-AGTAA
129 CAAAAATGAAAAAAA-TTCAA-CTAAAATCATTTATAAGA-TTA
* * * * * * * * *
15092784 TCAAACTAATTAAAGTGAGTAACAAGTCTTTCGAAGGCATGAGTGATTATAAATAGACTCTTCTT
1 TAAAACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTT
* * * * *** * *
15092849 GCCAATGGATGGC-TTCTGGTTCACGTTTCCCAACAAAAACATTCAATTATGATTT-TTTTAACC
66 GTCAATGGATGGCTTTC-GCTTCATGTTTCCTAATGCAAACAATAAATTATGATTTGTTTTAACC
* * *
15092912 AAAAAGGAAAAAAATTTAGCTTAAAATCATTTATAA-AGTTA
130 AAAAATGAAAAAAATTCAAC-TAAAATCATTTATAAGA-TTA
* * * * * * *
15092953 TAAAACCACTTAAAGCAAGTAAC-AGGGATTTCGAAGGCATGAGTCACTATAAATAGAATGTTCT
1 TAAAACCATTTAAAGCGAGTAACTA-GGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCT
* * * * *
15093017 TGTCAATGGATGGCTTTCGCTTGATGTTTCCTTATGCAAAC-ATCAAATTATCATATATTTTAAC
65 TGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCAAACAAT-AAATTATGATTTGTTTTAAC
* ** ** * * *
15093081 AAAAAATGAGTAAAATTCAGTTTTCAGA-CTATTTATAGGATTA
129 CAAAAATGAAAAAAATTCA--ACTAAAATC-ATTTATAAGATTA
* * * * * * *
15093124 TAAAACTATTTAAAGCAAGCAACTAGACTTCCAAAGGCATGA-TAGA-TGATAAATGGACTTCTC
1 TAAAACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGT-GACT-ATAAATGGACTTTTC
* * *** * * *
15093187 TTGTCAATGGATGGCTTGCTCTTCACAATTCCCAATGCAAACAATAAATTATGATCTGTTGTAAC
64 TTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCAAACAATAAATTATGATTTGTTTTAAC
*
15093252 CAAAAATGAATGAAAATTCAACCTAAAATCATTTATAAGATTA
129 CAAAAATGAA-AAAAATTCAA-CTAAAATCATTTATAAGATTA
* * * *
15093295 TAAATCCATTTAAAGCAAGTAACTAGGCTTTTGAAGGCATGAGTGACTAT-AATGGACTTTTCCT
1 TAAAACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTT
* * * * * * * * * * * *
15093359 GTTAATAGATGGTTTTCACTTCACGTCTCTTAATGCAAACAACAATTTATTA-TTGTTTTAGCCT
66 GTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCAAACAATAAATTATGATTTGTTTTAACCA
* *
15093423 AAAA-GAAAAAAACTCAATTTAAAATCATTTATAA-AGTTA
131 AAAATGAAAAAAATTCAA-CTAAAATCATTTATAAGA-TTA
* * **
15093462 TAAAACCACTTAAAGCGAGTAAC-ATGGCTTTCAAAGGCATGAGTGACTATAAATTTACTTTTCT
1 TAAAACCATTTAAAGCGAGTAACTA-GGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCT
* * * * * *
15093526 TGTCAATGGATAGCTTTCGCTTCATGTTTCCCAATG-TAACCATCCAATTATGATTTGTTTTAGC
65 TGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCAAACAAT-AAATTATGATTTGTTTTAAC
* * * **
15093590 TAGAAATG-AAAAAATTGATTTAAAATCATTTATAAGATTA
129 CAAAAATGAAAAAAATTCAACTAAAATCATTTATAAGATTA
* * * ** *
15093630 AAAAATCATTTAAAGTGAGTAACTAGGCTTTCGAAGGCATGAGTGTTTATAAATTGACTTTTCTT
1 TAAAACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTT
* * * * * *
15093695 TTC-A---ATGCCTTTTGCTT-ATGTTT-CTCGATGCAAACAACAAATTATGATATGTTTTAACC
66 GTCAATGGATGGCTTTCGCTTCATGTTTCCT-AATGCAAACAATAAATTATGATTTGTTTTAACC
* *
15093754 AAAAAATGAAAGAAAATTCCACTTTAAATCATTTAT-AGCATTA
130 -AAAAATGAAA-AAAATTCAAC-TAAAATCATTTATAAG-ATTA
* * * * * *
15093797 TAAAACCATTTAAAGCGAGCAACTAGGCTTTCAAAGCCATCAGTAACTATAAGTGGACTTTTCTT
1 TAAAACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTT
* * * * * *
15093862 GCCCAA-GGATGGCTTTCACTTCATGTTTCCTAATGCAAATAACAAATTATGATTTGTTTTAGCT
66 G-TCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCAAACAATAAATTATGATTTGTTTTAACC
15093926 AAAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTA
130 AAAAATG-AAAAAAATTCAAC-TAAAATCATTTATAAGATTA
** * *
15093968 TAAAA-CAGTTTAAAGCGAGTAACTAGGCTTTTAAAGGCATGAGTGACTATAAATAGACTTTTTT
1 TAAAACCA-TTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCT
* * * * * *
15094032 TCTCATTGGATGGCTTTCGCTTCACGTTTCCAAATGCAAACAATAAATTATAATATGTTTTAACC
65 TGTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCAAACAATAAATTATGATTTGTTTTAACC
15094097 AAAAATGAAAAAAATTCAAACTAAAATCATTTATAA-AGTTA
130 AAAAATGAAAAAAATTC-AACTAAAATCATTTATAAGA-TTA
* * *
15094138 TAAAACCACTTAAAGTGAGTAA-TAAGGCTTTCGAAGGTATGAGTGACTATAAATGGACTTTTCT
1 TAAAACCATTTAAAGCGAGTAACT-AGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCT
* * * * * *
15094202 TGTCGATGGATGGCTTTCGCTTCATGTTTTCC-AATGCAAACAACAAATCATCATCTGTTTTAGC
65 TGTCAATGGATGGCTTTCGCTTCATG-TTTCCTAATGCAAACAATAAATTATGATTTGTTTTAAC
* *
15094266 CAAAAATGAAAAAAAAAACTCAACTCAAAATCATCTATAAGATTA
129 CAAAAATG---AAAAAAATTCAACT-AAAATCATTTATAAGATTA
* * * * *
15094311 TAAAACC-TTCAAAGCGAGCAACTAGGCTTTCGAAGCCATGAGTGACTGTAAATGAACTTTTCTT
1 TAAAACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTT
* * * *
15094375 GTCAATGGATGGC-TTCTGCTTACA--TTT-CTCGAT-CTAAACAACAAATTATGATCTATTTTA
66 GTCAATGGATGGCTTTC-GCTT-CATGTTTCCT-AATGC-AAACAATAAATTATGATTTGTTTTA
* *
15094435 ACTAAAAATGAAAGAAAATTCAACTTAAAATCATTT-TGCAAGACTA
127 ACCAAAAATGAAA-AAAATTCAAC-TAAAATCATTTAT--AAGATTA
* * * * * *
15094481 TAAATCCATTTAAAGCGAGTAACTACGCTTTCGAAGCCATAAGTGACTATAACTAGACTTTTCTT
1 TAAAACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTT
* * ** * * *
15094546 GTCGATGGATGGCTTTTGCTTCACATGTCCTAATGAAAACAACAAATTATGATTTG-TTTAACCA
66 GTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCAAACAATAAATTATGATTTGTTTTAACCA
* * * *
15094610 AAAATGAAAAAAACTCAATTTAAAATCATGTATAA-AGT-
131 AAAATGAAAAAAATTCAA-CTAAAATCATTTATAAGATTA
* ** * *
15094648 T-AAA-CACTTAAATTGAGTAACAAGGCTTTCGAAGGCATCAGTGACTATAAATGGACTTTTCTT
1 TAAAACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTT
* * *
15094711 TTCAATTGATGGCTTTCGCTT-ATGTTTCCTAATGCAAACAATAAATTATGATTTGTTTTAACAA
66 GTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCAAACAATAAATTATGATTTGTTTTAACCA
* * * *
15094775 AAAATGAAAGAAAACTCCACTAAATATAATTCATAAGATTA
131 AAAATGAAA-AAAATTCAACTAAA-ATCATTTATAAGATTA
** * * * *
15094816 TAAAATTATTTAAAGTGAGTAACTAGGCTTTTGAAGGCATGAGTGAATATAAATTGACTTTTCTT
1 TAAAACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTT
* * * *
15094881 GTCGATGGATGGCTTT-GCTTCATGTTTCCCAATGCAAACAATAAATTGTGATTTGTTTTAGCCA
66 GTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCAAACAATAAATTATGATTTGTTTTAACCA
15094945 AAAATGAAAAAA
131 AAAATGAAAAAA
15094957 GAAACTCAAC
Statistics
Matches: 1887, Mismatches: 365, Indels: 183
0.77 0.15 0.08
Matches are distributed among these distances:
162 1 0.00
163 26 0.01
164 49 0.03
165 89 0.05
166 28 0.01
167 149 0.08
168 170 0.09
169 236 0.13
170 400 0.21
171 553 0.29
172 146 0.08
173 39 0.02
174 1 0.00
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (169 bp):
TAAAACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTT
GTCAATGGATGGCTTTCGCTTCATGTTTCCTAATGCAAACAATAAATTATGATTTGTTTTAACCA
AAAATGAAAAAAATTCAACTAAAATCATTTATAAGATTA
Found at i:15099700 original size:343 final size:342
Alignment explanation
Indices: 15097892--15100020 Score: 1679
Period size: 343 Copynumber: 6.2 Consensus size: 342
15097882 GGTCGTGACA
* * ** * ** *
15097892 TAAAATCATTTAT-AAGATTATAAAACCATTTAAAGTGAACAACTATGCTTTGGAAGCCATGAGT
1 TAAAATCATTTATAAAG-TTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCAAAGGCATGAGT
* * * * * * * * * *
15097956 AACTATAAATGGACTTTGCTTGCCCAA-AGATAGCTTTC-ATTTCACGTTTCTCGATGCAAATAA
65 GACTATAAATGGACTTTTCTTG-TCAATGGATGGCTTTCGCTTT-ACATTTCCCAATGCAAACAA
* * * * * * *
15098019 TAAATTCTAATATGTTTTAGCCAGAAA-TGAAA-AAAAATCAACTTAAAATCATTTATAAGATTA
128 CAAATTATGATCTGTTCTAACCA-AAAGTGAAAGAAAATTCAACTTAAAATCATTTATAAGATTA
* * *
15098082 TAAAA-CACTTTCAAGTGAGTAACTAGGCTTTCG-AGGCATGAGTGAATATAAATGGACTTTT-T
192 TAAAACCA-TTTAAAGTAAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCT
* * * * * * *
15098144 CTCTCATTGGATGGCTTTCGCTTCACGTTTGC-TGATACAAACTTCTAATTATGATATATTTTAA
256 -TGTCAATGGATGGCTTTCGCTTCATGTTT-CTTGATGCAAACATCAAATTATGATCTATTTTAA
*
15098208 CTAAAAATG-AAAAAAATTCAATT
319 CCAAAAATGAAAAAAAATTCAATT
* * * *
15098231 TAAAATCATTTATAATGTTATAAAATCACTTAAAGTGAGTAA-TAAGGCTTTCGAAGGCATGAGT
1 TAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACT-AGGCTTTCAAAGGCATGAGT
* * * * * * * ** * *
15098295 GACTATAAATGGACTTTTATTGTTAGTGGATGGCTTTTGCTTCACGTTTCCCAATACAAGTATCC
65 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTTACATTTCCCAATGCAAACAACA
* * * *
15098360 AATAATGA--TG-TCTTAACCAAATA-TG--AGAAACATTCAATTTTAAAACCATTTATAGGATT
130 AATTATGATCTGTTC-TAACCAAA-AGTGAAAGAAA-ATTCAA-CTTAAAATCATTTATAAGATT
* * * *
15098419 ATAAAACCATTT-AAGCCAAGTAACTAGGCTTTCGAAGGCATG-TTGAC-ATAAATGTACTTTTA
191 ATAAAACCATTTAAAG-TAAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTC
* * * * ** * * *
15098481 TTGTCAATGGATGGATTTCGTTTTACGTTT-TCCAATGCAAACACCAAATTATGGTCTATTTTAG
255 TTGTCAATGGATGGCTTTCGCTTCATGTTTCT-TGATGCAAACATCAAATTATGATCTATTTTAA
* * *
15098545 TCAAAAATGGACAAAGAAAAACTCAACT
319 CCAAAAAT-G--AAA-AAAAATTCAATT
* * * * ** * *
15098573 TAAAATCATTTAT-AAGATTAAAAAACCATTTAAAGTGAGCAACTAGGCTTTTGAAGCCATAAGT
1 TAAAATCATTTATAAAG-TTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCAAAGGCATGAGT
* *
15098637 GACTATAAATGGACTATTCTAGTCAATGGATGGCTTTCGC-TTACATTTCCCAATGCAAACAACA
65 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTTACATTTCCCAATGCAAACAACA
** * * * * * ** * * *
15098701 AATTATGATCCATTTTGACCAAAACTAAAAGAAAATTCAATTTAAAATTGTCTA-AAAAGTTATG
130 AATTATGATCTGTTCTAACCAAAAGTGAAAGAAAATTCAACTTAAAATCATTTATAAGA-TTATA
* * * * * * * *
15098765 CAACAACTTAAAGCAAGTAACTAGGCTTTTGACGGCATGAGTCACTATAAATGGACTTTTCTTGC
194 AAACCATTTAAAGTAAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGT
* * * * *
15098830 CAATGGATGGCTGTAGCTTCATGTTTCTTGATGCAAACATCAAATTATGATTTGTTTGAACCAAA
259 CAATGGATGGCTTTCGCTTCATGTTTCTTGATGCAAACATCAAATTATGATCTATTTTAACCAAA
* *
15098895 AATG-AGAAAAATTAAATTT
324 AATGAAAAAAAATTCAA-TT
* * * **
15098914 TAAAATAATTTTAAAAAAATTATAAAACCA-TTAAAGGCGAGTAACTACACTTTCAAAGGCATGA
1 TAAAATCA-TTT-ATAAAGTTATAAAACCACTTAAA-GCGAGTAACTAGGCTTTCAAAGGCATGA
* * * * * * * *
15098978 GTAACCATAAGTGGACTTTTTCTTGTCAATGGATGGCTTCCTCTTCACATTTCCCAATTCAAATA
63 GTGACTATAAATGGAC-TTTTCTTGTCAATGGATGGCTTTCGCTTTACATTTCCCAATGCAAACA
* * * * *
15099043 ACAAATTATGATCTGTTTTAATCAATAGTGAGA-AAAATTCAATTTTAAAATCATTTATAAGATT
127 ACAAATTATGATCTGTTCTAACCAAAAGTGAAAGAAAATTCAA-CTTAAAATCATTTATAAGATT
* * * *
15099107 ATAAAACCATTTAAAGTAAGTAATTAAG-TTTCGAAGGCATGAGTGGCTATAAATGGACTTTACT
191 ATAAAACCATTTAAAGTAAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCT
* * ** * * *
15099171 TATGAATGGATGGCTTTCG-TTACATGTTTCAAGATGAAAACATCAAATTATAATCTATTTGAAA
256 TGTCAATGGATGGCTTTCGCTT-CATGTTTCTTGATGCAAACATCAAATTATGATCTATTT-TAA
*
15099235 CAAAAAATAGAAAAAAAATT-AATTTT
319 CCAAAAAT-GAAAAAAAATTCAA--TT
* * * *
15099261 TAAAATCACTTGT-AAGATTATAAAACAATTTAAAGCGAGTAACTAGGC-TTCTAAAGGCATGAG
1 TAAAATCATTTATAAAG-TTATAAAACCACTTAAAGCGAGTAACTAGGCTTTC-AAAGGCATGAG
** **
15099324 TGACTATGTATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTTACATTT-TTAGATGCAAACAA
64 TGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTTACATTTCCCA-ATGCAAACAA
* * *
15099388 CAAATTATTATTTGTTCTAACCAAAAGTGAAAGAAAATTCAACTTAAAATCATTTATAACATTAT
128 CAAATTATGATCTGTTCTAACCAAAAGTGAAAGAAAATTCAACTTAAAATCATTTATAAGATTAT
* * * * *
15099453 AAAACCATTTAAAGTGAGTAACTAGACTCTCGAAGGCATGAGTGACTATAAATGAACTTTTTTTT
193 AAAACCATTTAAAGTAAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGAC-TTTTCTT
* ** * * * *
15099518 TTCAATGGATGATTTTTGCTTCATGTTTCTTGATGCAAACAACAAATTTTGATCTGTTTTAACCA
257 GTCAATGGATGGCTTTCGCTTCATGTTTCTTGATGCAAACATCAAATTATGATCTATTTTAACCA
* * *
15099583 AAAATGATAACAATTTCAATT
322 AAAATGAAAAAAAATTCAATT
* * *
15099604 TAAAATCATTTCTAAAGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCAAAGGCATTAGTG
1 TAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCAAAGGCATGAGTG
* * * * * ** * * *
15099669 ACTACAAATGGAATTTTCTTGTCAATGGATGGATTTTGCTTCATGTTTTCCAATGTAAACAAGAA
66 ACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTTACATTTCCCAATGCAAACAACAA
* * * * * ** * * *
15099734 ATTATGGTATGTT-TAGCCAAAAATTGAAAAAAAAAACAACGTAAAATCATCTATAAGATTATAT
131 ATTATGATCTGTTCTAACC-AAAAGTGAAAGAAAATTCAACTTAAAATCATTTATAAGATTATAA
* * * * * * ** * * * *
15099798 ATCCATTAAAAATGAGCAATTAGGCTTTC-ACAACCATAAGTGATTGTAAATGAACTTTTCTTGT
195 AACCATTTAAAGTAAGTAACTAGGCTTTCGA-AGGCATGAGTGACTATAAATGGACTTTTCTTGT
* * * **
15099862 CAATGGATGGCTTTCGCTT-ATGTTTCCCT-ATGCAAGCAACAAATTATGATCGGTTTTAACCAA
259 CAATGGATGGCTTTCGCTTCATGTTT-CTTGATGCAAACATCAAATTATGATCTATTTTAACCAA
** *
15099925 AAATGAAGGAAAATTCAACT
323 AAATGAAAAAAAATTCAATT
* * ** ** * * * *
15099945 TAAAAGCATTT-TGTAAGACCATAAATTCATTTAAAGCGAGTAACTAGGCTTTCGAAGCCATAAG
1 TAAAATCATTTAT-AAAG-TTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCAAAGGCATGAG
15100009 TGACTATAAATG
64 TGACTATAAATG
15100021 ACTCATAATC
Statistics
Matches: 1421, Mismatches: 305, Indels: 125
0.77 0.16 0.07
Matches are distributed among these distances:
335 1 0.00
336 6 0.00
337 84 0.06
338 50 0.04
339 107 0.08
340 13 0.01
341 101 0.07
342 184 0.13
343 291 0.20
344 253 0.18
345 248 0.17
346 63 0.04
347 20 0.01
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.33
Consensus pattern (342 bp):
TAAAATCATTTATAAAGTTATAAAACCACTTAAAGCGAGTAACTAGGCTTTCAAAGGCATGAGTG
ACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTTACATTTCCCAATGCAAACAACAA
ATTATGATCTGTTCTAACCAAAAGTGAAAGAAAATTCAACTTAAAATCATTTATAAGATTATAAA
ACCATTTAAAGTAAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCA
ATGGATGGCTTTCGCTTCATGTTTCTTGATGCAAACATCAAATTATGATCTATTTTAACCAAAAA
TGAAAAAAAATTCAATT
Found at i:15100021 original size:171 final size:170
Alignment explanation
Indices: 15097892--15100020 Score: 1723
Period size: 171 Copynumber: 12.4 Consensus size: 170
15097882 GGTCGTGACA
* ** * * * *
15097892 TAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAACAACTATGCTTTGGAAGCCATGAGTA
1 TAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTG
* * * * ** * * * *
15097957 ACTATAAATGGACTTTGCTTGCCCAA-AGATAGCTTTCATTTCACGTTTCTCGATGCAAATAATA
66 ACTATAAATGGACTTTTCTTG-TCAATGGATGGCTTTCGCTTCACGTTTCCCAATGCAAACAACA
* * * * * * *
15098021 AATTCTAATATGTTTTAGCCAGAAATGAAAAAAAATCAACT
130 AATTATGATCTGTTTTAACCAAAAATGAAAAAAATTCAATT
* *
15098062 TAAAATCATTTATAAGATTATAAAA-CACTTTCAAGTGAGTAACTAGGCTTTCG-AGGCATGAGT
1 TAAAATCATTTATAAGATTATAAAACCA-TTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGT
* * * * ** * **
15098125 GAATATAAATGGACTTTT-TCTCTCATTGGATGGCTTTCGCTTCACGTTTGCTGATACAAACTTC
65 GACTATAAATGGACTTTTCT-TGTCAATGGATGGCTTTCGCTTCACGTTTCCCAATGCAAACAAC
* * * *
15098189 TAATTATGATATATTTTAACTAAAAATGAAAAAAATTCAATT
129 AAATTATGATCTGTTTTAACCAAAAATGAAAAAAATTCAATT
* * *
15098231 TAAAATCATTTATAATG-TTATAAAATCACTTAAAGTGAGTAA-TAAGGCTTTCGAAGGCATGAG
1 TAAAATCATTTATAA-GATTATAAAACCATTTAAAGCGAGTAACT-AGGCTTTCGAAGGCATGAG
* * * * * ** *
15098294 TGACTATAAATGGACTTTTATTGTTAGTGGATGGCTTTTGCTTCACGTTTCCCAATACAAGTATC
64 TGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAATGCAAACAAC
* * * * * *
15098359 CAATAATGA--TGTCTTAACCAAATATGAGAAACATTCAATTT
129 AAATTATGATCTGTTTTAACCAAAAATGAAAAAAATTCAA-TT
* * * *
15098400 TAAAACCATTTATAGGATTATAAAACCATTT-AAGCCAAGTAACTAGGCTTTCGAAGGCATG-TT
1 TAAAATCATTTATAAGATTATAAAACCATTTAAAG-CGAGTAACTAGGCTTTCGAAGGCATGAGT
* * * * * * *
15098463 GAC-ATAAATGTACTTTTATTGTCAATGGATGGATTTCGTTTTACGTTTTCCAATGCAAACACCA
65 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAATGCAAACAACA
* * ** * *
15098527 AATTATGGTCTATTTTAGTCAAAAATGGACAAAGAAAAACTCAACT
130 AATTATGATCTGTTTTAACCAAAAAT-G---AA-AAAAATTCAATT
* * * * * *
15098573 TAAAATCATTTATAAGATTAAAAAACCATTTAAAGTGAGCAACTAGGCTTTTGAAGCCATAAGTG
1 TAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTG
* * *
15098638 ACTATAAATGGACTATTCTAGTCAATGGATGGCTTTCGCTT-ACATTTCCCAATGCAAACAACAA
66 ACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAATGCAAACAACAA
** * * *
15098702 ATTATGATCCATTTTGACCAAAACTAAAAGAAAATTCAATT
131 ATTATGATCTGTTTTAACCAAAAATGAAA-AAAATTCAATT
** * * ** * * * * *
15098743 TAAAATTGTCTA-AAAAGTTATGCAACAACTTAAAGCAAGTAACTAGGCTTTTGACGGCATGAGT
1 TAAAATCATTTATAAGA-TTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGT
* * * * * *** *
15098807 CACTATAAATGGACTTTTCTTGCCAATGGATGGCTGTAGCTTCATGTTTCTTGATGCAAACATCA
65 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAATGCAAACAACA
* * * *
15098872 AATTATGATTTGTTTGAACCAAAAATGAGAAAAATTAAATTT
130 AATTATGATCTGTTTTAACCAAAAATGAAAAAAATTCAA-TT
* * * ** *
15098914 TAAAATAATTTTAAAAAAATTATAAAACCA-TTAAAGGCGAGTAACTACACTTTCAAAGGCATGA
1 TAAAATCA-TTT-ATAAGATTATAAAACCATTTAAA-GCGAGTAACTAGGCTTTCGAAGGCATGA
* * * * * * * *
15098978 GTAACCATAAGTGGACTTTTTCTTGTCAATGGATGGCTTCCTCTTCACATTTCCCAATTCAAATA
63 GTGACTATAAATGGAC-TTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAATGCAAACA
* * * *
15099043 ACAAATTATGATCTGTTTTAATCAATAGTGAGAAAAATTCAATTT
127 ACAAATTATGATCTGTTTTAACCAAAAATGAAAAAAATTCAA-TT
** * *
15099088 TAAAATCATTTATAAGATTATAAAACCATTTAAAGTAAGTAATTAAG-TTTCGAAGGCATGAGTG
1 TAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTG
* * * * * * * *
15099152 GCTATAAATGGACTTTACTTATGAATGGATGGCTTTCG-TTACATGTTT-CAAGATGAAAACATC
66 ACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTT-CACGTTTCCCA-ATGCAAACAAC
* * * *
15099215 AAATTATAATCTATTTGAAACAAAAAATAGAAAAAAAATT-AATTTT
129 AAATTATGATCTGTTT-TAACCAAAAAT-G-AAAAAAATTCAA--TT
* * * *
15099261 TAAAATCACTTGTAAGATTATAAAACAATTTAAAGCGAGTAACTAGGC-TTCTAAAGGCATGAGT
1 TAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTC-GAAGGCATGAGT
** * * **
15099325 GACTATGTATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTTACATTT-TTAGATGCAAACAAC
65 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCA-ATGCAAACAAC
* * * * *
15099389 AAATTATTATTTGTTCTAACCAAAAGTGAAAGAAAATTCAACT
129 AAATTATGATCTGTTTTAACCAAAAATGAAA-AAAATTCAATT
* * * *
15099432 TAAAATCATTTATAACATTATAAAACCATTTAAAGTGAGTAACTAGACTCTCGAAGGCATGAGTG
1 TAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTG
* * * ** * * ***
15099497 ACTATAAATGAACTTTTTTTTTTCAATGGATGATTTTTGCTTCATGTTTCTTGATGCAAACAACA
66 ACTATAAATGGAC-TTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAATGCAAACAACA
* * *
15099562 AATTTTGATCTGTTTTAACCAAAAATGATAACAATTTCAATT
130 AATTATGATCTGTTTTAACCAAAAATGA-AAAAAATTCAATT
* * * * *
15099604 TAAAATCATTTCTAA-AGTTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCAAAGGCATTAGT
1 TAAAATCATTTATAAGA-TTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGT
* * * * * * * *
15099668 GACTACAAATGGAATTTTCTTGTCAATGGATGGATTTTGCTTCATGTTTTCCAATGTAAACAAGA
65 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAATGCAAACAACA
* * * ** **
15099733 AATTATGGTATG-TTTAGCCAAAAATTGAAAAAAAAAACAACG
130 AATTATGATCTGTTTTAACCAAAAA-TG-AAAAAAATTCAATT
* * * * ** * * ** *
15099775 TAAAATCATCTATAAGATTATATATCCATTAAAAATGAGCAATTAGGCTTTC-ACAACCATAAGT
1 TAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCGA-AGGCATGAGT
* * * * * *
15099839 GATTGTAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCTT-ATGTTTCCCTATGCAAGCAACA
65 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAATGCAAACAACA
* * *
15099903 AATTATGATCGGTTTTAACCAAAAATGAAGGAAAATTCAACT
130 AATTATGATCTGTTTTAACCAAAAATGAA-AAAAATTCAATT
* * ** ** * *
15099945 TAAAAGCATTTTGTAAGACCATAAATTCATTTAAAGCGAGTAACTAGGCTTTCGAAGCCATAAGT
1 TAAAATCA-TTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGT
15100010 GACTATAAATG
65 GACTATAAATG
15100021 ACTCATAATC
Statistics
Matches: 1550, Mismatches: 353, Indels: 111
0.77 0.18 0.06
Matches are distributed among these distances:
167 54 0.03
168 35 0.02
169 199 0.13
170 319 0.21
171 349 0.23
172 180 0.12
173 170 0.11
174 210 0.14
175 34 0.02
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.33
Consensus pattern (170 bp):
TAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTG
ACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAATGCAAACAACAA
ATTATGATCTGTTTTAACCAAAAATGAAAAAAATTCAATT
Found at i:15100317 original size:171 final size:169
Alignment explanation
Indices: 15100086--15101726 Score: 985
Period size: 171 Copynumber: 9.8 Consensus size: 169
15100076 AGTTAAATTG
* * * *
15100086 GATCATAATTTGTTGTTTGCATTAGGAAACGTGAAG-AGAAAGCCATCCATTAACAAGAAAAGTC
1 GATCATAATTTGATGTTTGCATTGGGAAACATGAAGCA-AAAGCCATCCATTGACAAGAAAAGTC
* * * *
15100150 CATTTATAGTTAGTCATGCCTTCAAAAGCCTAGTTACTCACTTTAAATGGTTTCATAATCTTAAA
65 CATTTATAGTTACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATCTTAAA
* *
15100215 TATGTTTAAAAATTGAAGTTTTCTCATTTTTGGTTAAAATA
130 TATGTTT-AAAATTGAATTTTTCTCATTTTTGGTTAAAACA
* * * *
15100256 GATCATAATTTGACGTTTGCATTGGGGAAACATGGAGCAAAAGCCATCCATTGTCAAGAAAAGTT
1 GATCATAATTTGATGTTTGCATT-GGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTC
* * * * * * * *
15100321 CATTTATAGTCACTCATACTTTTGAAAGCTTCA-TTATTCGCTTTAAGTGGTTTTATAACTTTGT
65 CATTTATAGTTACTCATGCCTTCGAAAGCCT-AGTTACTCGCTTTAAATGGTTTTATAA-TCT-T
* * * *
15100385 AAATGAT-TTT-AAATTGAAATTTTTTTCCATTTTAGATTAAAATA
127 AAAT-ATGTTTAAAATTG-AATTTTTCT-CATTTTTGGTTAAAACA
* * ** * ** * * *
15100429 GATAATAATTGGATGTTTGTTTTGGAAAACATGAAGTGAAAGTCATCCATT-AGTAAGAAAGGTC
1 GATCATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAGCCATCCATTGA-CAAGAAAAGTC
* * * * *
15100493 CATTTATAGTTACTCATGCCTTCAAAAGCCTTA-TTACTTGGTTTAAGTAGTTTTATAA-C-T--
65 CATTTATAGTTACTCATGCCTTCGAAAGCC-TAGTTACTCGCTTTAAATGGTTTTATAATCTTAA
*** * * *
15100553 ATATAAAT-AACTTGAATTTTCTTTCATTTTTAGTTAAAACA
129 ATATGTTTAAAATTGAATTTT-TCTCATTTTTGGTTAAAACA
* * * ** *** *
15100594 GATCATAATTT-CT-TATAGCATTGGAAAATGTGAAATGAAAGCCATCCATTAACAAGAAAAGTC
1 GATCATAATTTGATGT-TTGCATTGGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTC
* * * * *
15100657 CATTCATAGTCACTCATGCCTTTGAAAGCCTAGTTTTA-TCTCTTTAAATGTTTTTATAATCTAA
65 CATTTATAGTTACTCATGCCTTCGAAAGCCTAG--TTACTCGCTTTAAATGGTTTTATAATCT--
* *
15100721 TAAATGAT-TATAAAATTGAATTTTTCTCATTTTT--TTTAAACA
126 TAAAT-ATGTTTAAAATTGAATTTTTCTCATTTTTGGTTAAAACA
* ** ** * ** * *
15100763 AATTGTAATTTGATGTTTAAATTGGGGAAACATTAAGTGAAACCCATCCATTGACAAGAAAAGTT
1 GATCATAATTTGATGTTTGCATT-GGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTC
* * * *
15100828 CATTTATAG-TAGCTCATGCCTTTGGAAGCCTTGTTACTCACTTTAAGA-GGTTTTTATAA-CTT
65 CATTTATAGTTA-CTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAA-ATGG-TTTTATAATCTT
* * ** * * *
15100890 AATAAATCATTTTCAATTGATTTTTTTTTTATTTTTGGTTAAAACA
127 AA-ATAT-GTTTAAAATTGA-ATTTTTCTCATTTTTGGTTAAAACA
* * * * * *
15100936 GATTATAATTTGATCTTTTCATAGGAAAACATGAAGCAAAAGCCATCCATTGACAA-AAAAGGTT
1 GATCATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAA-GTC
* ** * * * * * * * *
15101000 AATTTGCAGTCACTCATACTTTCGAAAGCGTAGTCACTTGC-TTAAATAGTTTTGTAATCTTATA
65 CATTTATAGTTACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATCTTA-A
* * * * * *
15101064 A-ATGATTTTAAGTTGATTTTTTTTTTTATTTTTTGTTAAAACA
129 ATATG-TTTAAAATTGA--ATTTTTCTCATTTTTGGTTAAAACA
* * * ** *
15101107 GATCGTAATTTGATGTTTGCATCT-GGAAACGA-GCAGCGAACTCCATTCATTGACAA-AAAATG
1 GATCATAATTTGATGTTTGCAT-TGGGAAAC-ATGAAGCAAAAGCCATCCATTGACAAGAAAA-G
* * * * *
15101169 TCCATTTATAGTTGCTCATGCCTTCGAAAGCCTTGTTACTCGCTTTAAATGGATTTATCATTTTA
63 TCCATTTATAGTTACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATCTTA
* *
15101234 TAA-ATGAATTT-AAGTTGAATTTTCTTTCATTTTTGGTTAAAACA
128 -AATATG--TTTAAAATTGAATTTT-TCTCATTTTTGGTTAAAACA
* * * * * * * *
15101278 TATCATAATTTGTTATTTACATTGGGAAACATCAAG-AGAAATCTATCCATTGACAAGAAAAGTT
1 GATCATAATTTGATGTTTGCATTGGGAAACATGAAGCA-AAAGCCATCCATTGACAAGAAAAGTC
* * *
15101342 CATTTGTAGTT-CGTCATGCCTTCGAAAGCTTAGTTACTCGTTTTAAATGG--------------
65 CATTTATAGTTAC-TCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATCTTAA
* *
15101392 ---T-TTTAAAATTGAATTTTTCTCATTTTTGGTCAAAATA
129 ATATGTTTAAAATTGAATTTTTCTCATTTTTGGTTAAAACA
* * **** ** **
15101429 GATTATAATTGGATGTTTGCATCATTAAACATGAAGTGAAAGCCATCCATTGACAAGAAAAGTTT
1 GATCATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCC
* * * * * * * * *
15101494 ATTTATAATCACTTATGCATTTGAAACCCCTAG-TACTTGCTTTTAGTGGTTTTATAA-CTTTAT
66 ATTTATAGTTACTCATGCCTTCGAAA-GCCTAGTTACTCGCTTTAAATGGTTTTATAATC-TTA-
* *
15101557 AA-ATGATTCT-AAATTGAATTATTTTTTATTTTTGGTTAAAACA
128 AATATG-TT-TAAAATTGAATT-TTTCTCATTTTTGGTTAAAACA
* * * * * *
15101600 TATCATAATTTGGTATTTGCATCT-AGAAACCTGAAGCAAAAGCCATCCATTGAGAAGAAAAGTC
1 GATCATAATTTGATGTTTGCAT-TGGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTC
* ** * * * * *
15101664 CATTTATAGTCACTCATATCTTTGAAAGCCTAATTATTCACTTTAAATGGTTTAATAATCTTA
65 CATTTATAGTTACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATCTTA
15101727 TAAATGACTT
Statistics
Matches: 1137, Mismatches: 251, Indels: 165
0.73 0.16 0.11
Matches are distributed among these distances:
151 99 0.09
152 16 0.01
154 1 0.00
163 3 0.00
164 64 0.06
165 46 0.04
166 15 0.01
168 7 0.01
169 20 0.02
170 88 0.08
171 511 0.45
172 194 0.17
173 71 0.06
174 2 0.00
ACGTcount: A:0.34, C:0.13, G:0.14, T:0.39
Consensus pattern (169 bp):
GATCATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCC
ATTTATAGTTACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATCTTAAAT
ATGTTTAAAATTGAATTTTTCTCATTTTTGGTTAAAACA
Found at i:15102150 original size:171 final size:170
Alignment explanation
Indices: 15101772--15104414 Score: 2405
Period size: 171 Copynumber: 15.5 Consensus size: 170
15101762 AACGTGGAAT
* * * * * * * *
15101772 GAAAGGCATCCATTGAGAAGAAAAGTCTATTTATAATGACTCATGCCTTTGAAAGCCTAGATACT
1 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACT
* * *
15101837 CGC-TTAAATGGATTTATAATCTTATAAATGATTTTAAGTTGAATTTTCTTTCATTTTTGGTTAA
66 TGCTTTAAGTGGTTTTATAA-CTTATAAATGATTTTAAGTTGAATTTTCTTTCATTTTTGGTT-A
* * * * * * *
15101901 AAACATATCATAATTT-TCTGTTTGCGTTGGGAACCGTAAAGA
129 AAACAAATCATAATTTGT-TATTTGCATTAGGAAACATGAAGA
* * * * *
15101943 GAAAGCCATCCATTGACAATAAAAGTCCGTTTATAGTCACTCATACCTTCAAAAGCCTAGTTACT
1 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACT
* * *
15102008 TGCTTT-CGATGGTTTTATATTCTTATAAATGATTTTAACTTGAATTTTCTTTCATTTTTGGTTA
66 TGCTTTAAG-TGGTTTTATA-ACTTATAAATGATTTTAAGTTGAATTTTCTTTCATTTTTGGTTA
** ** * * *
15102072 AAACTGATCAGCATTTGTTATTTGCATTAGTAAACGTCAAGA
129 AAACAAATCATAATTTGTTATTTGCATTAGGAAACATGAAGA
* * * * *
15102114 GAAAGCTATCCATTGACAAGAAAAGTCTATTTATAGTCAGTCATGCCTTCGAAAGCCTTATTTCT
1 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACT
* **
15102179 CGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTCAA-TTG-A-TTTCTTTCAGCTTTGGTTA
66 TGCTTTAAGTGGTTTTATAAC-TTATAAATGATTTT-AAGTTGAATTTTCTTTCATTTTTGGTTA
* * * * * * *
15102241 AAACAAATCGTTATTTGGTATTTGCATTGGGAAACGTGACGT
129 AAACAAATCATAATTTGTTATTTGCATTAGGAAACATGAAGA
* * * * *
15102283 GAAAGCCATCCATTGAAAAGAAAAGTCCATTTGTCGTCACTCATACCTTTGAAA-CCTTGTTACT
1 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACT
* * * * *
15102347 TGCTTTAAGTGATTTTATAACTTTATAAATGATTTTAA-TTGATTTTTTTTTCATTCTAGGTTAA
66 TGCTTTAAGTGGTTTTATAAC-TTATAAATGATTTTAAGTTGAATTTTCTTTCATTTTTGGTTAA
* * ** * *
15102411 AGCATATCATAA-TTGGAAGTTTGCATTGGGAAACATGAAGC
130 AACAAATCATAATTTGTTA-TTTGCATTAGGAAACATGAAGA
* * * *
15102452 GAAAGCCATCCATT-AGCAAGAAAAGTCTATTTATAGTTACTCATGCCTTCAAAAGCCTTGGTAC
1 GAAAGCCATCCATTGA-CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTAC
*** *
15102516 TCAATTTAAGTGGTTTTTATAACTATATAAATGATTTTAAGTTTAATTTTCTTTCATTTTTGGTT
65 TTGCTTTAAGTGG-TTTTATAACT-TATAAATGATTTTAAGTTGAATTTTCTTTCATTTTTGGTT
* * * * * **
15102581 AAAATAGATCATAATTTCTTGTTTGCATTGGGAAATGTGAA-A
128 AAAACAAATCATAATTTGTTATTTGCATTAGGAAACATGAAGA
* * * * * * * *
15102623 CAAAAGCTATTCATTGATAAGAAAAGTCCATTTATAGTCACTCATACCTTTGAAAGCCTAGTTTC
1 -GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTAC
* * * * * *
15102688 TTACTTTAAATGGTTTTATAATTTTATAAATGATTATAACATTGAATTTTC--TCATTTTTTGTT
65 TTGCTTTAAGTGGTTTTATAA-CTTATAAATGATTTTAA-GTTGAATTTTCTTTCATTTTTGGTT
* ** * * * * * *
15102751 AAAAAAAATTTGTAATTTGATGTTTACATCAGGAAACATTAAGC
128 AAAACAAA-TCATAATTTGTTATTTGCATTAGGAAACATGAAGA
* * * * *
15102795 GAAACCCATCTATTGACGAGAAAAGTCCATTTATAATCACTCATGCCTTCGGAAGCCTTGTTACT
1 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACT
* *
15102860 TGCTTTAAGTGGTTTTATAACTTTATAAATAATTTTCAA-TTGAATTTT-TTT-ATTTTTAGTTA
66 TGCTTTAAGTGGTTTTATAAC-TTATAAATGATTTT-AAGTTGAATTTTCTTTCATTTTTGGTTA
* * * * *
15102922 AAACATATTATAATTTGATCTTTTCA-TAGGGAAACATGAAGCA
129 AAACAAATCATAATTTGTTATTTGCATTA-GGAAACATGAAG-A
* * * * * * * * *
15102965 -AAAGCCATCCATTGATAAAACAAAGTCCATTTGTTGTCACTCATGCCTTCAAAAGCGTAGTCAT
1 GAAAGCCATCCATTGACAAGA-AAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTAC
* * * *
15103029 TTGCTTTAAATGGTTTTGTACTCTTATAGATGATTTTAAGTTGAATTTT-TTT-ATTTTTGGTTA
65 TTGCTTTAAGTGGTTTTATA-ACTTATAAATGATTTTAAGTTGAATTTTCTTTCATTTTTGGTTA
* * * * *
15103092 AAA-AAATCATAATTTGATGTTTGCATTTGGAAACATGCTACA
129 AAACAAATCATAATTTGTTATTTGCATTAGGAAACATG-AAGA
* * * *
15103134 -AAAGCCATTCATTGACAAGAAATGTCGATTT-TAGTCACTCATACCTTCGAAAGCCTTGTTACT
1 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACT
*** * * * *
15103197 CATTTTAAATGGATTTATCATCTTATAAGTGATTTT-AGTTGAATTTTCTTTCATTTTTGGTTAA
66 TGCTTTAAGTGGTTTTAT-AACTTATAAATGATTTTAAGTTGAATTTTCTTTCATTTTTGGTTAA
* * *
15103261 AATAGATCATAATTTGTTATTTGCATT-GAGAAACATCAAGA
130 AACAAATCATAATTTGTTATTTGCATTAG-GAAACATGAAGA
* ** * *
15103302 GAAAGCTATCCATTGACAAGAAAAGTCCATTTGCAGTCACTCATGCCTTCGAAAGCCCTATTACT
1 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACT
* * *
15103367 TGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAATTTTTTTTCATTTTTAGTTAA
66 TGCTTTAAGTGGTTTTATAAC-TTATAAATGATTTTAAGTTGAATTTTCTTTCATTTTTGGTTAA
* *
15103432 AACAAATCATAATTTGGTATTTGCATTAGTAAACATGAAGCA
130 AACAAATCATAATTTGTTATTTGCATTAGGAAACATGAAG-A
* * ** * * * **
15103474 -AAAGCCATCCATTGAGATGAAAAGTTTATTTGTAGCCACTCATACCTTTAAAAGCCTTGTTACT
1 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACT
* * * *
15103538 CGCTTTAAGT-ATTTTATAACTTTATAAATGATTTT-AGATTGAATATT-TTTCATTTTAGGTTA
66 TGCTTTAAGTGGTTTTATAAC-TTATAAATGATTTTAAG-TTGAATTTTCTTTCATTTTTGGTTA
* * * * * * * * *
15103600 AAATAGATAATAATTGGATGTTTGTATTGGGAAACGTGAAGCA
129 AAACAAATCATAATTTGTTATTTGCATTAGGAAACATGAAG-A
* * * * * *
15103643 -AAAGTCATCTATTGGCAAGAAAAGTCCATTTATAGTTACTCATGCCCTCAAAAGCCTTGTTACT
1 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACT
* * *
15103707 CT-TTTTAAGTGGTCTTATAACTGTATAAATGATTTTAAGGTGAATTTTCTTTCATTTTTGGTTA
66 -TGCTTTAAGTGGTTTTATAACT-TATAAATGATTTTAAGTTGAATTTTCTTTCATTTTTGGTTA
* ** *
15103771 AAACAAAGT-AGAATTTGTTATTTGTGTTAGGAAATC-TCAAGA
129 AAACAAA-TCATAATTTGTTATTTGCATTAGGAAA-CATGAAGA
** * * * * *
15103813 GAAAGATATCCATTGACAAGAAAAGTCCATTTGTAGTCAATCATACCTTCGAAAGCCCTATTACT
1 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACT
* * * * *
15103878 TGCTTTAAGTGGCTTAATAACTTTATAAATGATTTTAAATTAAATTTT-TCTCATTTTTGGTTAA
66 TGCTTTAAGTGGTTTTATAAC-TTATAAATGATTTTAAGTTGAATTTTCTTTCATTTTTGGTTAA
*
15103942 AACAAATCATAATTTGGTATTTGCA-TAGAGAAACATGAAGCA
130 AACAAATCATAATTTGTTATTTGCATTAG-GAAACATGAAG-A
* * * * *
15103984 -AAAGCCATCCATTGAAAAGAAAAATCCATTTGTAGTCACTCATACCTTTGAAAGCCTTGTTACT
1 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACT
** * * * * *
15104048 CACTTTAAGTGATTTTATAACTTTATAAATGATTTTAAATTGATTTTTTTTTATCATTTTAGGTT
66 TGCTTTAAGTGGTTTTATAAC-TTATAAATGATTTTAAGTTGA-ATTTTCTT-TCATTTTTGGTT
* * * * * *
15104113 AACACAGATCATAATTGGATGTTTGCATT-GGAAAACGTGAAGCA
128 AAAACAAATCATAATTTGTTATTTGCATTAGG-AAACATGAAG-A
* * *
15104157 -AAAGCCATCCATTGGCAAGAAAAGTCCATTTATAGTTACTCATGCCTTCAAAAGCCTTGTTACT
1 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACT
* * * * *
15104221 TGGTTAAAGTGGTTTTGTAACTATACAAATGATTTTAAGTTGAATTTTCTTTCACTTTTGGTTAA
66 TGCTTTAAGTGGTTTTATAACT-TATAAATGATTTTAAGTTGAATTTTCTTTCATTTTTGGTTAA
* * * **
15104286 AACAAATCATAATTTCTTGTTTGCATTGGGAAATGTGAA-A
130 AACAAATCATAATTTGTTATTTGCATTAGGAAACATGAAGA
* * * * * *
15104326 CAAAAGCCATTCATTGACAAGAAAAGTTCATTTATAGTCA-TGTATGCCTTCAAAATCCTTGTTA
1 -GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACT-CATGCCTTCGAAAGCCTTGTTA
** *
15104390 CTCACCTTAAGTGGTTTTATAACTT
64 CTTGCTTTAAGTGGTTTTATAACTT
15104415 TGCAAATCAT
Statistics
Matches: 2018, Mismatches: 385, Indels: 139
0.79 0.15 0.05
Matches are distributed among these distances:
166 11 0.01
167 60 0.03
168 76 0.04
169 438 0.22
170 405 0.20
171 698 0.35
172 192 0.10
173 137 0.07
174 1 0.00
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (170 bp):
GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACT
TGCTTTAAGTGGTTTTATAACTTATAAATGATTTTAAGTTGAATTTTCTTTCATTTTTGGTTAAA
ACAAATCATAATTTGTTATTTGCATTAGGAAACATGAAGA
Found at i:15103155 original size:681 final size:674
Alignment explanation
Indices: 15101773--15104415 Score: 2618
Period size: 681 Copynumber: 3.9 Consensus size: 674
15101763 ACGTGGAATG
* * * * * * * *
15101773 AAAGGCATCCATTGAGAAGAAAAGTCTATTTATAATGACTCATGCCTTTGAAAGCCTAGATACTC
1 AAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATACCTTCGAAAGCCTTGTTACTC
**
15101838 -GCTTAAATGGATTTATAATCTTATAAATGATTTTAAGTTGAATTTTCTTTCATTTTTGGTTAAA
66 AATTTAAATGGATTTATAA-CTTATAAATGATTTTAAGTTGAATTTTCTTTCATTTTTGGTT-AA
* * * * * * * *
15101902 AACATATCATAATTT-TCTGTTTGCGTTGGGAACCGT-AAAGAGAAAGCCATCCATTGACAATAA
129 AACAGATCATAATTTGT-TATTTGCATTGAGAAACATGAAACA-AAAGCCATCCATTGACAAGAA
* * * ** *
15101965 AAGTCCGTTTATAGTCACTCATACCTTCAAAAGCCTAGTTACTTGCTTTCGATGGTTTTAT-ATT
192 AAGTCCATTTATAGTCACTCATACCTTCGAAAGCCTAGTTACTTACTTTAAATGGTTTTATAACT
* ** ** *
15102029 CTTATAAATGATTTTAACTTGAATTTTCTTTCATTTTTGGTTAAAACTGATCAGCATTTGTTATT
257 -TTATAAATGATTTTAAATTGAATTTTC--TCATTTTTGGTTAAAACAAATCATAATTTGATATT
* * * * * *
15102094 TGCATTAGTAAACGTCAAG-AGAAAGCTATCCATTGACAAGAAAAGTCTATTTATAGTCAGTCAT
319 TGCATTAGGAAACATGAAGCA-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT
* * *
15102158 GCCTTCGAAAGCCTTATTTCTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTCAATTG-A
383 GCCTTCAAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTT-AATTGAA
* * * * * * * **
15102222 TTTCTTTCAGCTTTGGTTAAAACAAATCGTTATTTGGTATTTGCATTGGGAAACGTGACGTGAAA
447 TTT-TTTCA-TTTTAGTTAAAACAAATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCAAAA
* * ** *
15102287 GCCATCCATTGAAAAGAAAAGTCCATTTGTCGTCACTCATACCTTTGAAA-CCTTGTTACTTGCT
510 GCCATCCATTGAAAA-AAAAGTCCATTTGTAGTCACTCATGCCTTCAAAAGCCTTGTTATTTGCT
* * * * *
15102351 TTAAGTGATTTTATAACTTTATAAATGATTTTAA-TTGATTTTTTTTTCATTCTAGGTTAAAGCA
574 TTAAGTGGTTTTATAACTTTATAAATGATTTTAAGTTGA-ATTTTTTTCATTTTTGGTTAAA-AA
* * * * *
15102415 TATCATAATTGGAAGTTTGCATTGGGAAACATG-AAGCG
637 AATCATAATTTGATGTTTGCATTAGGAAACATGCAA-CA
* * * *
15102453 AAAGCCATCCATT-AGCAAGAAAAGTCTATTTATAGTTACTCATGCCTTCAAAAGCCTTGGTACT
1 AAAGCCATCCATTGA-CAAGAAAAGTCTATTTATAGTCACTCATACCTTCGAAAGCCTTGTTACT
* * *
15102517 CAATTTAAGTGGTTTTTATAACTATATAAATGATTTTAAGTTTAATTTTCTTTCATTTTTGGTTA
65 CAATTTAAATGG-ATTTATAACT-TATAAATGATTTTAAGTTGAATTTTCTTTCATTTTTGGTTA
* * * * ** * * *
15102582 AAATAGATCATAATTTCTTGTTTGCATTGGGAAATGTGAAACAAAAGCTATTCATTGATAAGAAA
128 AAACAGATCATAATTTGTTATTTGCATTGAGAAACATGAAACAAAAGCCATCCATTGACAAGAAA
* * *
15102647 AGTCCATTTATAGTCACTCATACCTTTGAAAGCCTAGTTTCTTACTTTAAATGGTTTTATAATTT
193 AGTCCATTTATAGTCACTCATACCTTCGAAAGCCTAGTTACTTACTTTAAATGGTTTTATAACTT
* * * ** * *
15102712 TATAAATGATTATAACATTGAATTTTCTCATTTTTTGTTAAAAAAAATTTGTAATTTGATGTTTA
258 TATAAATGATTTTAA-ATTGAATTTTCTCATTTTTGGTTAAAACAAA-TCATAATTTGATATTTG
* * * * * * *
15102777 CATCAGGAAACATTAAGCGAAACCCATCTATTGACGAGAAAAGTCCATTTATAATCACTCATGCC
321 CATTAGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC
** * *
15102842 TTCGGAAGCCTTGTTACTTGCTTTAAGTGGTTTTATAACTTTATAAATAATTTTCAATTGAATTT
386 TTCAAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTT-AATTGAATTT
* * * * * * *
15102907 TTTTATTTTTAGTTAAAACATATTATAATTTGATCTTTTCATAGGGAAACATGAAGCAAAAGCCA
450 TTTCA-TTTTAGTTAAAACAAATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCAAAAGCCA
* * * *
15102972 TCCATTGATAAAACAAAGTCCATTTGTTGTCACTCATGCCTTCAAAAGCGTAGTCATTTGCTTTA
514 TCCATTGA-AAAA-AAAGTCCATTTGTAGTCACTCATGCCTTCAAAAGCCTTGTTATTTGCTTTA
* * *
15103037 AATGGTTTTGT-ACTCTTATAGATGATTTTAAGTTGAATTTTTTT-ATTTTTGGTTAAAAAAATC
577 AGTGGTTTTATAACT-TTATAAATGATTTTAAGTTGAATTTTTTTCATTTTTGGTTAAAAAAATC
* *
15103100 ATAATTTGATGTTTGCATTTGGAAACATGCTACA
641 ATAATTTGATGTTTGCATTAGGAAACATGCAACA
* * *
15103134 AAAGCCATTCATTGACAAGAAATGTCGATTT-TAGTCACTCATACCTTCGAAAGCCTTGTTACTC
1 AAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATACCTTCGAAAGCCTTGTTACTC
* * *
15103198 ATTTTAAATGGATTTATCATCTTATAAGTGATTTT-AGTTGAATTTTCTTTCATTTTTGGTTAAA
66 AATTTAAATGGATTTAT-AACTTATAAATGATTTTAAGTTGAATTTTCTTTCATTTTTGGTTAAA
* * * *
15103262 ATAGATCATAATTTGTTATTTGCATTGAGAAACATCAAGA-GAAAGCTATCCATTGACAAGAAAA
130 ACAGATCATAATTTGTTATTTGCATTGAGAAACATGAA-ACAAAAGCCATCCATTGACAAGAAAA
** * * *
15103326 GTCCATTTGCAGTCACTCATGCCTTCGAAAGCCCTA-TTACTTGCTTTAAGTGGTTTTATAACTT
194 GTCCATTTATAGTCACTCATACCTTCGAAAG-CCTAGTTACTTACTTTAAATGGTTTTATAACTT
* * *
15103390 TATAAATGATTTTAAATTGAATTTTTTTTCATTTTTAGTTAAAACAAATCATAATTTGGTATTTG
258 TATAAATGATTTTAAATTGAA--TTTTCTCATTTTTGGTTAAAACAAATCATAATTTGATATTTG
* * * ** * * *
15103455 CATTAGTAAACATGAAGCAAAAGCCATCCATTGAGATGAAAAGTTTATTTGTAGCCACTCATACC
321 CATTAGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC
* *
15103520 TTTAAAAGCCTTGTTACTCGCTTTAAGT-ATTTTATAACTTTATAAATGATTTTAGATTGAATAT
386 TTCAAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTA-ATTGAAT-T
* * * * * *
15103584 TTTTCATTTTAGGTTAAAATAGATAATAATTGGATGTTTGTATTGGGAAACGTGAAGCAAAAGTC
449 TTTTCATTTTA-GTTAAAACAAATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCAAAAGCC
* * * * * *
15103649 ATCTATTGGCAAGAAAAGTCCATTTATAGTTACTCATGCCCTCAAAAGCCTTGTTACTCTT--TT
513 ATCCATT-GAAAAAAAAGTCCATTTGTAGTCACTCATGCCTTCAAAAGCCTTGTTA-T-TTGCTT
* * *
15103712 TAAGTGGTCTTATAACTGTATAAATGATTTTAAGGTGAATTTTCTTTCATTTTTGGTTAAAACAA
575 TAAGTGGTTTTATAACTTTATAAATGATTTTAAGTTGAATTTT-TTTCATTTTTGGTTAAAA-AA
* * * ** *
15103777 AGT-AGAATTTGTTATTTGTGTTAGGAAATC-T-CAAGA
638 A-TCATAATTTGATGTTTGCATTAGGAAA-CATGCAACA
** * * * * *
15103813 GAAAGATATCCATTGACAAGAAAAGTCCATTTGTAGTCAATCATACCTTCGAAAGCCCTATTACT
1 -AAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATACCTTCGAAAGCCTTGTTACT
*** * * * * * *
15103878 TGCTTTAAGTGGCTTAATAACTTTATAAATGATTTTAAATTAAATTTT-TCTCATTTTTGGTTAA
65 CAATTTAAATGGATTTATAAC-TTATAAATGATTTTAAGTTGAATTTTCTTTCATTTTTGGTTAA
* * * * *
15103942 AACAAATCATAATTTGGTATTTGCATAGAGAAACATGAAGCAAAAGCCATCCATTGAAAAGAAAA
129 AACAGATCATAATTTGTTATTTGCATTGAGAAACATGAAACAAAAGCCATCCATTGACAAGAAAA
* * * * * * *
15104007 ATCCATTTGTAGTCACTCATACCTTTGAAAGCCTTGTTACTCACTTTAAGTGATTTTATAACTTT
194 GTCCATTTATAGTCACTCATACCTTCGAAAGCCTAGTTACTTACTTTAAATGGTTTTATAACTTT
* * * * * * *
15104072 ATAAATGATTTTAAATTGATTTTTTTTTATCATTTTAGGTTAACACAGATCATAATTGGATGTTT
259 ATAAATGATTTTAAATTGA----ATTTTCTCATTTTTGGTTAAAACAAATCATAATTTGATATTT
* * *
15104137 GCATT-GGAAAACGTGAAGCAAAAGCCATCCATTGGCAAGAAAAGTCCATTTATAGTTACTCATG
320 GCATTAGG-AAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * *
15104201 CCTTCAAAAGCCTTGTTACTTGGTTAAAGTGGTTTTGTAACTATACAAATGATTTTAAGTTGAAT
384 CCTTCAAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAA-TTGAA-
* ** * *
15104266 TTTCTTTCACTTTTGGTTAAAACAAATCATAATTTCTTGTTTGCATTGGGAAATGTGAAACAAAA
447 TTT-TTTCA-TTTTAGTTAAAACAAATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCAAAA
* * * * * * * **
15104331 GCCATTCATTGACAAGAAAAGTTCATTTATAGTCA-TGTATGCCTTCAAAATCCTTGTTACTCAC
510 GCCATCCATTGA-AAAAAAAGTCCATTTGTAGTCACT-CATGCCTTCAAAAGCCTTGTTATTTGC
*
15104395 CTTAAGTGGTTTTATAACTTT
573 TTTAAGTGGTTTTATAACTTT
15104416 GCAAATCATA
Statistics
Matches: 1627, Mismatches: 281, Indels: 105
0.81 0.14 0.05
Matches are distributed among these distances:
676 1 0.00
677 111 0.07
678 297 0.18
679 65 0.04
680 166 0.10
681 556 0.34
682 126 0.08
683 155 0.10
684 35 0.02
685 111 0.07
686 4 0.00
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (674 bp):
AAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATACCTTCGAAAGCCTTGTTACTC
AATTTAAATGGATTTATAACTTATAAATGATTTTAAGTTGAATTTTCTTTCATTTTTGGTTAAAA
CAGATCATAATTTGTTATTTGCATTGAGAAACATGAAACAAAAGCCATCCATTGACAAGAAAAGT
CCATTTATAGTCACTCATACCTTCGAAAGCCTAGTTACTTACTTTAAATGGTTTTATAACTTTAT
AAATGATTTTAAATTGAATTTTCTCATTTTTGGTTAAAACAAATCATAATTTGATATTTGCATTA
GGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAA
AAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAATTGAATTTTTTCAT
TTTAGTTAAAACAAATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCAAAAGCCATCCATTG
AAAAAAAAGTCCATTTGTAGTCACTCATGCCTTCAAAAGCCTTGTTATTTGCTTTAAGTGGTTTT
ATAACTTTATAAATGATTTTAAGTTGAATTTTTTTCATTTTTGGTTAAAAAAATCATAATTTGAT
GTTTGCATTAGGAAACATGCAACA
Found at i:15103603 original size:340 final size:340
Alignment explanation
Indices: 15101773--15104415 Score: 2486
Period size: 340 Copynumber: 7.8 Consensus size: 340
15101763 ACGTGGAATG
* * * * * *
15101773 AAAGGCATCCATTGAGAAGAAAAGTCTATTTATAATGACTCATGCCTTTGAAAGCCTAGATACTC
1 AAAGCCATCCATTGAGAAGAAAAGTCTATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTC
* *
15101838 GC-TTAAATGGATTTATAA-TCTTATAAATGATTTTAAGTTGAATTTTCTTTCATTTTTGGTTAA
66 GCTTTAAGTGGTTTTATAACT-TTATAAATGATTTTAA-TTGAATTTTCTTTCATTTTTGGTT-A
* * * * *
15101901 AAACATATCATAATTT-TCTGTTTGCGTTGGGAACCGTAAAGAGAAAGCCATCCATTGACAATAA
128 AAACAAATCATAATTTGT-TGTTTGCATTGGGAAACGTGAAGA-AAAGCCATCCATTGACAAGAA
* *
15101965 AAGTCCGTTTATAGTCACTCATACCTTCAAAAGCC-TAGTTACTTGCTTT-CGATGGTTTTAT-A
191 AAGTCCATTTATAGTCACTCATACCTTCAAAAGCCTTA-TTACTTGCTTTAAG-TGGTTTTATAA
* * * * ** ** *
15102027 TTCTTATAAATGATTTTAACTTGAATTTTCTTTCATTTTTGGTTAAAACTGATCAGCATTTGTTA
254 CT-TTATAAATGATTTTAAATTGAATTTTTTTTCATTTTTAGTTAAAACAAATCATAATTTGGTA
* * *
15102092 TTTGCATTAGTAAACGTCAAG-A
318 TTTGCATTAGGAAACATGAAGCA
* * * * *
15102114 GAAAGCTATCCATTGACAAGAAAAGTCTATTTATAGTCAGTCATGCCTTCGAAAGCCTTATTTCT
1 -AAAGCCATCCATTGAGAAGAAAAGTCTATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACT
**
15102179 CGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTCAATTG-A-TTTCTTTCAGCTTTGGTTAA
65 CGCTTTAAGTGGTTTTATAACTTTATAAATGATTTT-AATTGAATTTTCTTTCATTTTTGGTTAA
* * * * * * *
15102242 AACAAATCGTTATTTGGTATTTGCATTGGGAAACGTGACGTGAAAGCCATCCATTGAAAAGAAAA
129 AACAAATCATAATTTGTTGTTTGCATTGGGAAACGTGAAG-AAAAGCCATCCATTGACAAGAAAA
* * ** * *
15102307 GTCCATTTGTCGTCACTCATACCTTTGAAA-CCTTGTTACTTGCTTTAAGTGATTTTATAACTTT
193 GTCCATTTATAGTCACTCATACCTTCAAAAGCCTTATTACTTGCTTTAAGTGGTTTTATAACTTT
* * * * *
15102371 ATAAATGATTTT-AATTGATTTTTTTTTCA-TTCTAGGTTAAAGCATATCATAA-TTGGAAGTTT
258 ATAAATGATTTTAAATTGAATTTTTTTTCATTTTTA-GTTAAAACAAATCATAATTTGGTA-TTT
* *
15102433 GCATTGGGAAACATGAAGCG
321 GCATTAGGAAACATGAAGCA
* * *
15102453 AAAGCCATCCATT-AGCAAGAAAAGTCTATTTATAGTTACTCATGCCTTCAAAAGCCTTGGTACT
1 AAAGCCATCCATTGAG-AAGAAAAGTCTATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACT
** * *
15102517 CAATTTAAGTGGTTTTTATAACTATATAAATGATTTTAAGTTTAATTTTCTTTCATTTTTGGTTA
65 CGCTTTAAGTGG-TTTTATAACTTTATAAATGATTTTAA-TTGAATTTTCTTTCATTTTTGGTTA
* * * * * * * *
15102582 AAATAGATCATAATTTCTTGTTTGCATTGGGAAATGTGAAACAAAAGCTATTCATTGATAAGAAA
128 AAACAAATCATAATTTGTTGTTTGCATTGGGAAACGTG-AAGAAAAGCCATCCATTGACAAGAAA
** * * * *
15102647 AGTCCATTTATAGTCACTCATACCTTTGAAAGCC-TAGTTTCTTACTTTAAATGGTTTTATAATT
192 AGTCCATTTATAGTCACTCATACCTTCAAAAGCCTTA-TTACTTGCTTTAAGTGGTTTTATAACT
* * * * ** * *
15102711 TTATAAATGATTATAACATTGAA--TTTTCTCATTTTTTGTTAAAAAAAATTTGTAATTTGATGT
256 TTATAAATGATTTTAA-ATTGAATTTTTTTTCATTTTTAGTTAAAACAAA-TCATAATTTGGTAT
* * * *
15102774 TTACATCAGGAAACATTAAGCG
319 TTGCATTAGGAAACATGAAGCA
* * * * *
15102796 AAACCCATCTATTGACG-AGAAAAGTCCATTTATAATCACTCATGCCTTCGGAAGCCTTGTTACT
1 AAAGCCATCCATTGA-GAAGAAAAGTCTATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACT
* * *
15102860 TGCTTTAAGTGGTTTTATAACTTTATAAATAATTTTCAATTGAATTTT-TTT-ATTTTTAGTTAA
65 CGCTTTAAGTGGTTTTATAACTTTATAAATGATTTT-AATTGAATTTTCTTTCATTTTTGGTTAA
* * * * * * * * *
15102923 AACATATTATAATTTGATCTTTTCATAGGGAAACATGAAGCAAAAGCCATCCATTGATAAAACAA
129 AACAAATCATAATTTGTTGTTTGCATTGGGAAACGTGAAG-AAAAGCCATCCATTGACAAGA-AA
* * * * * * * *
15102988 AGTCCATTTGTTGTCACTCATGCCTTCAAAAG-CGTAGTCATTTGCTTTAAATGGTTTTGT-ACT
192 AGTCCATTTATAGTCACTCATACCTTCAAAAGCCTTA-TTACTTGCTTTAAGTGGTTTTATAACT
* * * * *
15103051 CTTATAGATGATTTTAAGTTGAA-TTTTTTT-ATTTTTGGTTAAAA-AAATCATAATTTGATGTT
256 -TTATAAATGATTTTAAATTGAATTTTTTTTCATTTTTAGTTAAAACAAATCATAATTTGGTATT
* *
15103113 TGCATTTGGAAACATGCTA-CA
320 TGCATTAGGAAACATG-AAGCA
* * * * *
15103134 AAAGCCATTCATTGACAAGAAATGTCGATTT-TAGTCACTCATACCTTCGAAAGCCTTGTTACTC
1 AAAGCCATCCATTGAGAAGAAAAGTCTATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTC
** * * * * *
15103198 ATTTTAAATGGATTTATCA-TCTTATAAGTGATTTTAGTTGAATTTTCTTTCATTTTTGGTTAAA
66 GCTTTAAGTGGTTTTATAACT-TTATAAATGATTTTAATTGAATTTTCTTTCATTTTTGGTTAAA
* * * * * * *
15103262 ATAGATCATAATTTGTTATTTGCATTGAGAAACATCAAGAGAAAGCTATCCATTGACAAGAAAAG
130 ACAAATCATAATTTGTTGTTTGCATTGGGAAACGTGAAGA-AAAGCCATCCATTGACAAGAAAAG
** * * *
15103327 TCCATTTGCAGTCACTCATGCCTTCGAAAGCCCTATTACTTGCTTTAAGTGGTTTTATAACTTTA
194 TCCATTTATAGTCACTCATACCTTCAAAAGCCTTATTACTTGCTTTAAGTGGTTTTATAACTTTA
15103392 TAAATGATTTTAAATTGAATTTTTTTTCATTTTTAGTTAAAACAAATCATAATTTGGTATTTGCA
259 TAAATGATTTTAAATTGAATTTTTTTTCATTTTTAGTTAAAACAAATCATAATTTGGTATTTGCA
*
15103457 TTAGTAAACATGAAGCA
324 TTAGGAAACATGAAGCA
* * * * * **
15103474 AAAGCCATCCATTGAGATGAAAAGTTTATTTGTAGCCACTCATACCTTTAAAAGCCTTGTTACTC
1 AAAGCCATCCATTGAGAAGAAAAGTCTATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTC
* * *
15103539 GCTTTAAGT-ATTTTATAACTTTATAAATGATTTTAGATTGAATATT-TTTCATTTTAGGTTAAA
66 GCTTTAAGTGGTTTTATAACTTTATAAATGATTTTA-ATTGAATTTTCTTTCATTTTTGGTTAAA
* * * * * * * * *
15103602 ATAGATAATAATTGGATGTTTGTATTGGGAAACGTGAAGCAAAAGTCATCTATTGGCAAGAAAAG
130 ACAAATCATAATTTGTTGTTTGCATTGGGAAACGTGAAG-AAAAGCCATCCATTGACAAGAAAAG
* * * * * * *
15103667 TCCATTTATAGTTACTCATGCCCTCAAAAGCCTTGTTACTCT-TTTTAAGTGGTCTTATAACTGT
194 TCCATTTATAGTCACTCATACCTTCAAAAGCCTTATTACT-TGCTTTAAGTGGTTTTATAACTTT
** * * * *
15103731 ATAAATGATTTTAAGGTGAATTTTCTTTCATTTTTGGTTAAAACAAAGT-AGAATTTGTTATTTG
258 ATAAATGATTTTAAATTGAATTTTTTTTCATTTTTAGTTAAAACAAA-TCATAATTTGGTATTTG
** *
15103795 TGTTAGGAAATC-TCAAG-A
322 CATTAGGAAA-CATGAAGCA
** * * * * * * *
15103813 GAAAGATATCCATTGACAAGAAAAGTCCATTTGTAGTCAATCATACCTTCGAAAGCCCTATTACT
1 -AAAGCCATCCATTGAGAAGAAAAGTCTATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACT
* * * * *
15103878 TGCTTTAAGTGGCTTAATAACTTTATAAATGATTTTAAATTAAATTTT-TCTCATTTTTGGTTAA
65 CGCTTTAAGTGGTTTTATAACTTTATAAATGATTTT-AATTGAATTTTCTTTCATTTTTGGTTAA
* * * * * *
15103942 AACAAATCATAATTTGGTATTTGCATAGAGAAACATGAAGCAAAAGCCATCCATTGAAAAGAAAA
129 AACAAATCATAATTTGTTGTTTGCATTGGGAAACGTGAAG-AAAAGCCATCCATTGACAAGAAAA
* * ** * ** *
15104007 ATCCATTTGTAGTCACTCATACCTTTGAAAGCCTTGTTACTCACTTTAAGTGATTTTATAACTTT
193 GTCCATTTATAGTCACTCATACCTTCAAAAGCCTTATTACTTGCTTTAAGTGGTTTTATAACTTT
* * * *
15104072 ATAAATGATTTTAAATTG-ATTTTTTTTTATCATTTTAGGTTAACACAGATCATAA-TTGGATGT
258 ATAAATGATTTTAAATTGAATTTTTTTTCAT--TTTTA-GTTAAAACAAATCATAATTTGG-TAT
*
15104135 TTGCATT-GGAAAACGTGAAGCA
319 TTGCATTAGG-AAACATGAAGCA
* * *
15104157 AAAGCCATCCATTG-GCAAGAAAAGTCCATTTATAGTTACTCATGCCTTCAAAAGCCTTGTTACT
1 AAAGCCATCCATTGAG-AAGAAAAGTCTATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACT
* * * * * * *
15104221 TGGTTAAAGTGGTTTTGTAACTATACAAATGATTTTAAGTTGAATTTTCTTTCACTTTTGGTTAA
65 CGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAA-TTGAATTTTCTTTCATTTTTGGTTAA
* * * *
15104286 AACAAATCATAATTTCTTGTTTGCATTGGGAAATGTGAAACAAAAGCCATTCATTGACAAGAAAA
129 AACAAATCATAATTTGTTGTTTGCATTGGGAAACGTG-AAGAAAAGCCATCCATTGACAAGAAAA
* * * * * ** *
15104351 GTTCATTTATAGTCA-TGTATGCCTTCAAAATCCTTGTTACTCACCTTAAGTGGTTTTATAACTT
193 GTCCATTTATAGTCACT-CATACCTTCAAAAGCCTTATTACTTGCTTTAAGTGGTTTTATAACTT
15104415 T
257 T
15104416 GCAAATCATA
Statistics
Matches: 1877, Mismatches: 356, Indels: 134
0.79 0.15 0.06
Matches are distributed among these distances:
336 11 0.01
337 137 0.07
338 231 0.12
339 81 0.04
340 494 0.26
341 396 0.21
342 154 0.08
343 238 0.13
344 132 0.07
345 3 0.00
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (340 bp):
AAAGCCATCCATTGAGAAGAAAAGTCTATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTC
GCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAATTGAATTTTCTTTCATTTTTGGTTAAAA
CAAATCATAATTTGTTGTTTGCATTGGGAAACGTGAAGAAAAGCCATCCATTGACAAGAAAAGTC
CATTTATAGTCACTCATACCTTCAAAAGCCTTATTACTTGCTTTAAGTGGTTTTATAACTTTATA
AATGATTTTAAATTGAATTTTTTTTCATTTTTAGTTAAAACAAATCATAATTTGGTATTTGCATT
AGGAAACATGAAGCA
Found at i:15113661 original size:2 final size:2
Alignment explanation
Indices: 15113651--15113693 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
15113641 TATAACACAC
*
15113651 AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15113693 A
1 A
15113694 CACACACATC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:15113799 original size:42 final size:42
Alignment explanation
Indices: 15113723--15113812 Score: 121
Period size: 42 Copynumber: 2.1 Consensus size: 42
15113713 ACCATCCAAC
* *
15113723 CATCATCAGCTCATGTGCACTCCATAACGCACATAGTTGGGT
1 CATCATCAGCTCATGTGCACTCCATAACGCACATAGCTAGGT
*
15113765 CATCATCAGCTCATGTGCACTCCCA-CAC-CTACATAGCTAGGT
1 CATCATCAGCTCATGTGCACT-CCATAACGC-ACATAGCTAGGT
15113807 CATCAT
1 CATCAT
15113813 TATCACATAA
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
41 1 0.02
42 39 0.91
43 3 0.07
ACGTcount: A:0.27, C:0.32, G:0.16, T:0.26
Consensus pattern (42 bp):
CATCATCAGCTCATGTGCACTCCATAACGCACATAGCTAGGT
Found at i:15116365 original size:42 final size:42
Alignment explanation
Indices: 15116305--15116429 Score: 207
Period size: 42 Copynumber: 3.0 Consensus size: 42
15116295 TGTTGATGTG
* *
15116305 GACCCGGCTATGTACGAGTAGGAGTGCACATAAGCCATTGCT
1 GACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCT
15116347 GACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCT
1 GACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCT
*
15116389 GACCCGACTATGTGCGAGT-GGAAGTGCACATAAGCCGTTGC
1 GACCCGGCTATGTGCGAGTAGG-AGTGCACATAAGCCGTTGC
15116430 ATATGAGATG
Statistics
Matches: 79, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
41 2 0.03
42 77 0.97
ACGTcount: A:0.24, C:0.24, G:0.31, T:0.21
Consensus pattern (42 bp):
GACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCT
Found at i:15142946 original size:5 final size:5
Alignment explanation
Indices: 15142936--15142967 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
15142926 TATTTTTGTC
15142936 TTTAT TTTAT TTTA- TTTAT TTTAT TTT-T TTTA
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTA
15142968 ATCTAATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
4 8 0.32
5 17 0.68
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:15142955 original size:14 final size:14
Alignment explanation
Indices: 15142936--15142967 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
15142926 TATTTTTGTC
15142936 TTTATTTTATTTTA
1 TTTATTTTATTTTA
*
15142950 TTTATTTTATTTTT
1 TTTATTTTATTTTA
15142964 TTTA
1 TTTA
15142968 ATCTAATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTATTTTATTTTA
Found at i:15143043 original size:11 final size:11
Alignment explanation
Indices: 15143008--15143032 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
15142998 AATTAGTTTC
15143008 AAAAAAATTAA
1 AAAAAAATTAA
15143019 AAAAAAATTAA
1 AAAAAAATTAA
15143030 AAA
1 AAA
15143033 TTAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (11 bp):
AAAAAAATTAA
Found at i:15147976 original size:12 final size:12
Alignment explanation
Indices: 15147959--15147983 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
15147949 CTAATCAAAC
15147959 TAAATAAAATAT
1 TAAATAAAATAT
15147971 TAAATAAAATAT
1 TAAATAAAATAT
15147983 T
1 T
15147984 CTATTTTCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
TAAATAAAATAT
Found at i:15150541 original size:19 final size:19
Alignment explanation
Indices: 15150514--15150551 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
15150504 CCATTTGACT
15150514 TATTAGAGTATGATTTGAG
1 TATTAGAGTATGATTTGAG
*
15150533 TATTGGAGTATGATTTGAG
1 TATTAGAGTATGATTTGAG
15150552 GTTTAAAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.42
Consensus pattern (19 bp):
TATTAGAGTATGATTTGAG
Found at i:15156726 original size:14 final size:14
Alignment explanation
Indices: 15156678--15156737 Score: 52
Period size: 14 Copynumber: 4.2 Consensus size: 14
15156668 AGGCCATATA
15156678 AAAGAAAAGA-AATG
1 AAAGAAAAGATAA-G
*
15156692 AATG-AAAGATGAAAG
1 AAAGAAAAGAT--AAG
*
15156707 ATAGAAAAGATAAG
1 AAAGAAAAGATAAG
*
15156721 AAAGAAAAGAAAAG
1 AAAGAAAAGATAAG
15156735 AAA
1 AAA
15156738 AGTCAAAGTC
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
13 5 0.14
14 21 0.57
15 3 0.08
16 8 0.22
ACGTcount: A:0.70, C:0.00, G:0.22, T:0.08
Consensus pattern (14 bp):
AAAGAAAAGATAAG
Found at i:15156910 original size:9 final size:9
Alignment explanation
Indices: 15156896--15156937 Score: 52
Period size: 9 Copynumber: 4.8 Consensus size: 9
15156886 ACCAAAAATC
15156896 GAGAAAGAA
1 GAGAAAGAA
15156905 GAGAAAGAA
1 GAGAAAGAA
15156914 -AGAAAGAA
1 GAGAAAGAA
*
15156922 -AGGAAAAAA
1 GA-GAAAGAA
15156931 GAGAAAG
1 GAGAAAG
15156938 CTGGGGTTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
8 9 0.31
9 19 0.66
10 1 0.03
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (9 bp):
GAGAAAGAA
Found at i:15158886 original size:20 final size:20
Alignment explanation
Indices: 15158844--15158886 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
15158834 AAATGGATGA
* *
15158844 TTTAGATACTTAAATTTATT
1 TTTAGATACTGAAATGTATT
15158864 TTTAGATA-TGAAATGTATAT
1 TTTAGATACTGAAATGTAT-T
15158884 TTT
1 TTT
15158887 TCATTTATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.35, C:0.02, G:0.09, T:0.53
Consensus pattern (20 bp):
TTTAGATACTGAAATGTATT
Found at i:15160379 original size:20 final size:19
Alignment explanation
Indices: 15160329--15160381 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 19
15160319 TTAGTTTTAT
*
15160329 TTTAAGTTATATTTTGCATG
1 TTTAA-TTATGTTTTGCATG
*
15160349 TTTTATATATGTTTTGCATG
1 TTTAAT-TATGTTTTGCATG
15160369 TGTTAATTATGTT
1 T-TTAATTATGTT
15160382 CAAAAAGTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
19 1 0.04
20 23 0.82
21 4 0.14
ACGTcount: A:0.23, C:0.04, G:0.15, T:0.58
Consensus pattern (19 bp):
TTTAATTATGTTTTGCATG
Found at i:15163841 original size:233 final size:231
Alignment explanation
Indices: 15163433--15163897 Score: 849
Period size: 233 Copynumber: 2.0 Consensus size: 231
15163423 AAGAAATAAA
15163433 TTGAAAACCTTATGAAATGGTTTGTAATTTGTTGTTTAAACTTGCCTCCATGTTACTCGCCTTTA
1 TTGAAAACCTTATGAAATGGTTTGTAATTTGTTGTTTAAACTTGCCTCCATGTTACTCGCCTTTA
15163498 GATATTTATGATAATGTCTGTTTACTCATTGGGATTGCAAAATCTCACCCACCTCCTTTCCAAAT
66 GATATTTATGATAATGTCTGTTTACTCATTGGGATTGCAAAATCTCACCCACCTCCTTTCCAAAT
*
15163563 ATTTCAGGCTTGTGGTAGCTTGTAGATACCCGATTTTATCGAGGATTCCAGTTGACCCCTCTATC
131 ATTTCAGGCCTGTGGTAGCTTGTAGATACCCGATTTTATCGAGGATTCCAGTTGACCCCTCTATC
15163628 TCACAGACAATAGGTTACTATCACCAACACTTGGTG
196 TCACAGACAATAGGTTACTATCACCAACACTTGGTG
15163664 TTNGAAAACCTTATGAAATGGTTTGTAATTTGTTGTTTAAACTTGCCTCCATTGTTACTCGCCTT
1 TT-GAAAACCTTATGAAATGGTTTGTAATTTGTTGTTTAAACTTGCCTCCA-TGTTACTCGCCTT
*
15163729 TAGATATTTATGATAATGTCTGTTTACTCATTGGGATTGCAAAATCTCATCCACCTCCTTTCCAA
64 TAGATATTTATGATAATGTCTGTTTACTCATTGGGATTGCAAAATCTCACCCACCTCCTTTCCAA
*
15163794 ATATTTCAGGCCTGTGGTAGCTTGTAGATACCCGATTTTGTCGAGGATTCCAGTTGACCCCTCTA
129 ATATTTCAGGCCTGTGGTAGCTTGTAGATACCCGATTTTATCGAGGATTCCAGTTGACCCCTCTA
* * * *
15163859 TCTTACAGATAGTAGGTTTCTATCACCAACACTTGGTG
194 TCTCACAGACAATAGGTTACTATCACCAACACTTGGTG
15163897 T
1 T
15163898 ATTTATGGGC
Statistics
Matches: 225, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
231 2 0.01
232 48 0.21
233 175 0.78
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.37
Consensus pattern (231 bp):
TTGAAAACCTTATGAAATGGTTTGTAATTTGTTGTTTAAACTTGCCTCCATGTTACTCGCCTTTA
GATATTTATGATAATGTCTGTTTACTCATTGGGATTGCAAAATCTCACCCACCTCCTTTCCAAAT
ATTTCAGGCCTGTGGTAGCTTGTAGATACCCGATTTTATCGAGGATTCCAGTTGACCCCTCTATC
TCACAGACAATAGGTTACTATCACCAACACTTGGTG
Found at i:15166635 original size:171 final size:169
Alignment explanation
Indices: 15166337--15174778 Score: 7118
Period size: 171 Copynumber: 49.7 Consensus size: 169
15166327 GTTGACAACA
* * * *
15166337 TTTATAA-CTTTATAAATGATTCTAAATTGAATTGTTTTTCATTTTTGGTTCAAACATATCATAA
1 TTTATAATC-TTATAAATGATTTTAAGTTGAATT-TTTTTCATTTTTGGTTAAAACAGATCATAA
* * * * * *
15166401 TTTGG-TATTTGCATCT-GTAAACGTGAAGCAAAAGTCATCCATTAAGAAGAAAAGTCCATTTAT
64 -TTGGATGTTTGCCT-TAG-AAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTAT
* * * *
15166464 AGTCACTCATGCCTTTGAAAGCCTAGTTACTTGTTTTAAATAGT
126 AGTCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGT
* * * * * *
15166508 CTAATAATCTTATAAATGACTTTT-AGCTGAATTGTTTTTCATTTTTGGCTAATACAAATCATAA
1 TTTATAATCTTATAAATGA-TTTTAAGTTGAATT-TTTTTCATTTTTGGTTAAAACAGATCATAA
* * * * * * *
15166572 TTTG-TAATTTGCATTAGCAAATGTGAAGCGAAAGGCATCCATTGACAAGCAAAGTCTATTTATA
64 TTGGAT-GTTTGCCTTAG-AAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATA
* * * * * * *
15166636 GTCAGTTATACCTTCGAAAACGTAGTTAGTCACTTTAAATGGT
127 GTCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGT
* * * *
15166679 TTTATAATGTTA-AATATG-TTTTAAAATTGAATTTTTCTCATTTTTGGTTAAAACATATCATAA
1 TTTATAATCTTATAA-ATGATTTT-AAGTTGAATTTTTTTCATTTTTGGTTAAAACAGATCATAA
* * * * * * * * * *
15166742 TTTGATGTTTTCATCGAGAAACATTAAGAGAAAGCCATCCATTGATAAGAAAAGTTCATTTATGG
64 TTGGATGTTTGCCT-TAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAG
* * * * * * * *
15166807 TTAATCACGCCTTCAAAAGCCTCGTTACTTGCTTTCAGTGGT
128 TCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGT
* * * *
15166849 TTTATAA-CTTTATAAATGATTTTAAATTGAATTTTTTTTTGCATTTTAGCTTAAAATAGATCAT
1 TTTATAATC-TTATAAATGATTTTAAGTTGAA--TTTTTTT-CATTTTTGGTTAAAACAGATCAT
* * * ** * *
15166913 AATTGGATGTTTGCATTGGGAGACGTGAAGAAAAAGCCATCCATTGGCAAGAAAAGTCCACTTAT
62 AATTGGATGTTTGCCTT-AGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTAT
* * * * *
15166978 AGTTACTCATGCCTTCAAAAGCCTTGTTATTCAG-TTTAAGTGGT
126 AGTCACTCATGCCTTCGAAAGCCTAGTTACTC-GCTTTAAATGGT
* *
15167022 TTTATAA-CTATATAAATGATTTTAAGTTGAAATTTCTTTCATTTTTGGTTAAAACATATCATAA
1 TTTATAATCT-TATAAATGATTTTAAGTTG-AATTTTTTTCATTTTTGGTTAAAACAGATCATAA
*** * * * * ** *
15167086 TTTCTTGTTTGCATTGGGAAATGTCAAATGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAC
64 TTGGATGTTTGCCTT-AGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAG
* *
15167151 TCACTCAAGCCTTC-AAAGCCTAGTTACTCTCTTTAAATGGT
128 TCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGT
* * * * * **
15167192 TTTATAATCTTATAAATGATTATAAAATTGAATTTTTCTCTTTTTTTGTTAAAACA-ATTTGTAA
1 TTTATAATCTTATAAATGATT-TTAAGTTGAATTTTTTTCATTTTTGGTTAAAACAGA-TCATAA
* * * * * * * **
15167256 TTTGATGTTTACATTGAGAAACATGAAGCAAAATCTATCCATTGATGAGAAAAGTCCATTTATAG
64 TTGGATGTTTGCCTT-AGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAG
* ** * *
15167321 TCACTCACGTATTCGAAAGCCTTA-TTACTCGCTTTAAGTGAT
128 TCACTCATGCCTTCGAAAGCC-TAGTTACTCGCTTTAAATGGT
* * * * *
15167363 CTTATAA-CTTTATAAATCATTTTCAA-TTGAATTTTTTTCATTTTTGGTTAATACAAATTATAA
1 TTTATAATC-TTATAAATGATTTT-AAGTTGAATTTTTTTCATTTTTGGTTAAAACAGATCATAA
* * ** * * * * * * **
15167426 TTTGATCTTTGTATAAGGAAACGTGAAGCAAAAGCCATTCATTGATAACAAATGTCCATTTGCAG
64 TTGGATGTTTGCCTTA-GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAG
* * * * *
15167491 TCACTCATGTCTTTGAAAGCGTAGTCACTCACTTTAAATGGT
128 TCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGT
** * * * * * * *
15167533 TTTGCAATCTTTTAAATGGTTTTAAGTTCAATTTTTTTTTACTTTTGGTTAAAACATATCGTAAT
1 TTTATAATCTTATAAATGATTTTAAGTTGAA-TTTTTTTCATTTTTGGTTAAAACAGATCATAAT
** * * * * * * * *
15167598 TTAATGTTTGCATCTAAAAATGTGCAGCGAAAGCCATTCATTGGCAAGAAATGTCCACTTATAGT
65 TGGATGTTTGCCT-TAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
* * * * * * * *
15167663 CATTTATGCCTTTGAAAGCCTTGTTACTCACTCTAAGTGGA
129 CACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGT
* * *
15167704 TTTATCATCTTATAAATGATTTTAAGTTGAATTTTCTTTCATTTTTAGTTAAAACATATCATAAT
1 TTTATAATCTTATAAATGATTTTAAGTTGAATTTT-TTTCATTTTTGGTTAAAACAGATCATAAT
* * * * * * * * * * * *
15167769 TTGTTATTTGCATTGGGAAATGTTAAGAGAAAGCTATCCATTGACAATAAAAGTCAATTTGTAGT
65 TGGATGTTTGCCTT-AGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
* * * * *
15167834 CAATCATCCCTTCGAAAGCCCTA-TTACTCACTGTAAGTGGT
129 CACTCATGCCTTCGAAAG-CCTAGTTACTCGCTTTAAATGGT
* * * *
15167875 TTTATAA-CTTTATTAATGATTTGAAATTGAATTTGTTTTCATTTTTGGTTAAAA-AAATCATAA
1 TTTATAATC-TTATAAATGATTTTAAGTTGAATTT-TTTTCATTTTTGGTTAAAACAGATCATAA
* * * * * * *
15167938 TTTGG-TATTTGCATCAAGAAA-GTCGTAGAGAAAG-CAGCCTATTGAGAAGAAAAG-CCTATTT
64 -TTGGATGTTTGCCT-TAGAAACGT-GAAGCGAAAGCCATCC-ATTGACAAGAAAAGTCC-ATTT
** * ** **
15167999 ATAGTCGTTGATGCCTTCGAAAGCCTAGCCACTCTATTTAAATGG-
124 ATAGTCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGT
* * * *
15168044 TTTAGTAATCTTACAAATGATTTTGAGTTGAATTTTGTTTTTCATTTTTGGCTAAAACA-ACTTA
1 TTTA-TAATCTTATAAATGATTTTAAGTTGAA--TT-TTTTTCATTTTTGGTTAAAACAGA-TCA
* * * * * *
15168108 TAATT-TATTGTTT-CCATTGGGAAACATGAAGCAAAACCCATCCATTGAGAAGAAAAGTCCATT
61 TAATTGGA-TGTTTGCC-TT-AGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATT
* * *
15168171 TATAATCACTCATCCCTTCGAAAGCTTAGTTACTCGCTTTAAAT-GT
123 TATAGTCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGT
* * * * * * *
15168217 TCTAATAATCTTAAAAATGACTTTCAA-CTGAATTGTTTTTCATTTTAGGCTAAAACAAATCATA
1 T-TTATAATCTTATAAATGA-TTTTAAGTTGAATT-TTTTTCATTTTTGGTTAAAACAGATCATA
* * * ** * *
15168281 ATTTG-TAATTTGCATTGAGAAACGTGAAGCGAAAGGTATCCATTGATAAGAAAAGTTCATTTAT
63 ATTGGAT-GTTTGCCTT-AGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTAT
* * * * *
15168345 AGTAACTCATGCCTTCAAAAGACTAGTTACTCACTTTAAATAGT
126 AGTCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGT
* * * * *
15168389 TTTATAATCTTGTAAATGATCTTAAGTTGAATTCTTTTTCATTTTTGGCTAAAATAGGTCATAAT
1 TTTATAATCTTATAAATGATTTTAAGTTGAATT-TTTTTCATTTTTGGTTAAAACAGATCATAAT
* * * * * *
15168454 TGGATGCTAG-TTTCACGAAACGTGAAGCGAAAGCCATCAATTGACAAGAAAAATACATTTATAG
65 TGGATGTTTGCCTT-A-GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAG
* * * ** * **
15168518 TCACTAATTCCTTCAAAAAACTAGTTACTCACTTTAAATACT
128 TCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGT
* * * *
15168560 TTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTCTTTTTTAGCTAAAACATATCATAATT
1 TTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTCATTTTTGGTTAAAACAGATCATAATT
* * * ** *
15168625 GGATGTTAGCCTTGAGAAACGTGAAGCAAAAGCCATCTAAGGACAAGAAATGTCCATTTATAGTC
66 GGATGTTTGCCTT-AGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTC
** * *
15168690 AC-CATGCCTTTAAAAGACTAGTTACTCACTTTAAATGGT
130 ACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGT
* * * *
15168729 TTTGTAATCTTATAAATGATTTTAAGTTG-ATTTTTTTCTTTTTTGGCTAAAATAGATCATAATT
1 TTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTCATTTTTGGTTAAAACAGATCATAATT
* * * * * * *
15168793 GGATGTTTGCCTTGGGAAACATGAAGCAAAAGCCATCCATTGAGAAGAAAATTCCATTTCTAGTT
66 GGATGTTTGCCTT-AGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTC
* * * *
15168858 ACTCATGTCTTCGAAAGACTTGTTACTCGCTTTAAATAGT
130 ACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGT
* * * ** * * * *
15168898 TTTATAATCTTGTATATGATTTTAAGCTGAAATTTTTTTTGTTTTTGGATAGAGCATATCATAAT
1 TTTATAATCTTATAAATGATTTTAAGTTG-AATTTTTTTCATTTTTGGTTAAAACAGATCATAAT
* * * * *
15168963 TGGATGTTTGTCTTAGGAAACGTGAAGC-AAAACTCATCCATTGATAAAAAAAGTCCATTTATTG
65 TGGATGTTTGCCTTA-GAAACGTGAAGCGAAAGC-CATCCATTGACAAGAAAAGTCCATTTATAG
* * * * * *
15169027 TCGCTCATGCCTTTGAAAGGCTAGTTACTCACCTTAAATAGT
128 TCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGT
* * * *
15169069 TTTATAATCTCATAAATGATTTTAAGTTGAATTTTTTTCATTTTTAGTTAATACATATCATAATT
1 TTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTCATTTTTGGTTAAAACAGATCATAATT
* * * * * ** * *
15169134 GGATGTTTGTCTCAAGAAATGTGATGCAAAAGTAATCCATTGACAAAAAAAGTCCATATATAGTC
66 GGATGTTTGCCT-TAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTC
* * * * * *
15169199 GCTCATGCCTTCGAAATCCTAGTTACTCACCTTAAGTGAT
130 ACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGT
* * * * * *
15169239 TTTATAA-CTT-TAACAATAATTTTAAATTGTATTTTTTT-ATTTTTTTGTTAAAACAGAACATC
1 TTTATAATCTTAT-A-AATGATTTTAAGTTGAATTTTTTTCA-TTTTTGGTTAAAACAGATCATA
* * * * * * * * * * *
15169301 ATTTGATGTTTACATTAGGAAACATGAAGTG-AAGTCTATCAATTGTCCA-AAAAGTTCGTTTAT
63 ATTGGATGTTTGCCTTA-GAAACGTGAAGCGAAAG-CCATCCATTGACAAGAAAAGTCCATTTAT
* * * **
15169364 AGTCACTTATGCCTTCAAAAGACTAGGGACTCG-TATTAAATGGT
126 AGTCACTCATGCCTTCGAAAGCCTAGTTACTCGCT-TTAAATGGT
* * * * *
15169408 TTTGTAATCTTATAAAGGATTTTAAGTTGAATTTTTTTTCATTTTTCGCTAAAATAGAT-ATAAT
1 TTTATAATCTTATAAATGATTTTAAGTTGAA-TTTTTTTCATTTTTGGTTAAAACAGATCATAAT
* ** * * * * * * *
15169472 TAGATGTTAACCACTGGAAACATGAAACGAAAGCCATCGATTGACAAGAAAATTTCATTTATAGT
65 TGGATGTTTGCC-TTAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
* * * * * * ** *
15169537 TAGTAATTCCTTCAAAAGACTAGTTACAAGCTTTAAATAGT
129 CACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGT
* * *
15169578 TTTATAACCTTATAAATGATTTTAAGTTGAATTCTTTTTCATTTTTAGTTAAAAAAGATCATAAT
1 TTTATAATCTTATAAATGATTTTAAGTTGAATT-TTTTTCATTTTTGGTTAAAACAGATCATAAT
* * * * * *
15169643 TAGATGTTTACCTTGAGAAACATGAAGCGAAAGCCCTCCATCGACAAGAAAAGTTCATTTATAGT
65 TGGATGTTTGCCTT-AGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
* * * *
15169708 CACTCATGCCTTCGGAAGACTAGTTACTCACTTTCAATGGT
129 CACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGT
* * * *
15169749 TTTACAATCTTATAAATGATTTTAAGTTGATTTTTTTTCATTTTTAGTTAAAACATATCATAATT
1 TTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTCATTTTTGGTTAAAACAGATCATAATT
* * * * * *
15169814 GGATGTTTGCCTTGGGAAGCGTAAAGCAAAAGCCATCAATTGACAAGAAAAGTCCATTTAGAGTC
66 GGATGTTTGCCTT-AGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTC
* * * *
15169879 ATTCATGCATTTGAAAGCCTA-TTACTCGGTTTAAATGGT
130 ACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGT
* * * * * *
15169918 TTTATAATCTTAGAAATGATTTTAAGTTCAATTTTTTTCATTTTTGGCTGAAACAAATCATAATC
1 TTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTCATTTTTGGTTAAAACAGATCATAATT
* * ***
15169983 GGATGTTAGCCTCAAGAAACGTGAAGCGAAAATGATCCATTGACAAGAAAAGTCCATTTATAGTC
66 GGATGTTTGCCT-TAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTC
* * ** * * * * *
15170048 AGTAATGTTTTTGAAAGACTAGTTACTCACGTTAAATAG-
130 ACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGT
* * * * * * *
15170087 ATCACAATCTTATAAGTGATTTTAAGTTGAATTTTATTTCATTTTTGGGTAAAATAGATAATAAT
1 TTTATAATCTTATAAATGATTTTAAGTTGAATTTT-TTTCATTTTTGGTTAAAACAGATCATAAT
* * * * ** * **
15170152 TGGATGTTTACCTTGGAAAACGTTAAACGAAAGCCATCCATCAAAAAGAAAAGTCCATTTGCAGT
65 TGGATGTTTGCCTTAG-AAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
* * * *
15170217 CACTCATGCCTTTGAAAGACATA-TTCCTTGCTTTAAATGGT
129 CACTCATGCCTTCGAAAG-CCTAGTTACTCGCTTTAAATGGT
* *
15170258 TTTATAATCTTGTAAATGATTTTAAGTT-AACTTTTTTTTCATTTTTGGTTAAAACAAATCATAA
1 TTTATAATCTTATAAATGATTTTAAGTTGAA--TTTTTTTCATTTTTGGTTAAAACAGATCATAA
* * * * *
15170322 TTGGATGTTTGCCTCAAGAAACGAGAAGCAAAAGCCATCCATTGAGAAGGAAAGTCCATTTATAG
64 TTGGATGTTTGCCT-TAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAG
* ** *
15170387 TCACTCATGCCTTTGAAATACTAATTACAT-GCTTTAAATGGT
128 TCACTCATGCCTTCGAAAGCCTAGTTAC-TCGCTTTAAATGGT
* **
15170429 TTTATAATCTTATAAATGATTTCAAGTTG-ATTTTGTTTCATTTTTGGTTAAAACTTATCATAAT
1 TTTATAATCTTATAAATGATTTTAAGTTGAATTTT-TTTCATTTTTGGTTAAAACAGATCATAAT
* *
15170493 TGGATGTTTTCCTTAAGAAACGTGAAGCAAAAGCCATCCATT-----G---A---C-TTTATAGT
65 TGGATGTTTGCCTT-AGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
* * * *
15170546 CACTCATG-CTCCAAAAGACTAGTTACTTGCTTTAAATGGT
129 CACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGT
* *
15170586 TTTATAATCTTATAAATGATTTTAAGTTGAATATTTTTATCATTTTTGGATAAAACATATCATAA
1 TTTATAATCTTATAAATGATTTTAAGTTGAAT-TTTTT-TCATTTTTGGTTAAAACAGATCATAA
* * ** * * *
15170651 TTGAATGTTTGCCTTGAGAAATGAAAAGCGATAGCCATCCATTAACAAGAAGAGTCCATTTATAG
64 TTGGATGTTTGCCTT-AGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAG
* *
15170716 TCACTCATGCCTTCGAAAGGCTTGTTACTCGCTTTAAATGGT
128 TCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGT
* * *
15170758 TTGATAATCTTGTAAATGATTTTAAGTTGAATTTTTTTTCAGTTTTGGTTAAAACAGATCATAAT
1 TTTATAATCTTATAAATGATTTTAAGTTGAA-TTTTTTTCATTTTTGGTTAAAACAGATCATAAT
* * * * *
15170823 TGGATGTTTTCCTTGAGAAACATGAAACGAAAGCCATCCATTGAGAAGACAAGTCCATTTATAGT
65 TGGATGTTTGCCTT-AGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
* * * * *
15170888 CACCCATGCCTTCAAAAGGCTAGTTACTCGCTTTCAATGAT
129 CACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGT
* * * *
15170929 TTTATAATCTTATAAATGATTTTAAGTT---TATTTTTAATTTTTAGTTAAAACATATCATAATT
1 TTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTCATTTTTGGTTAAAACAGATCATAATT
* * * * * * * ** *
15170991 GCATGTTTGACTTGGGAA-GTGAGAAGGGTAAA-TCTTAAATTGACAAGAAAAGTTCATTTATAG
66 GGATGTTTGCCTTAGAAACGT--GAAGCG-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAG
* * * * *
15171054 TCATTCATGCCTTC-AAAGCCCTAGTTTCTGGGATTT-AATTGT
128 TCACTCATGCCTTCGAAAG-CCTAGTTACT-CGCTTTAAATGGT
* * * *
15171096 TTTACAATCTTATAAATGATTTT-AGTTGATTTTTTTTCATTTTTGGCTAAAACAAATCATAATT
1 TTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTCATTTTTGGTTAAAACAGATCATAATT
* * * * * * * * *
15171160 GAATGTTTGCCTCAGGAAATGAGAAGCAAAAGCCATCCATTGGCAAGAAAAGTCTATTTACAATC
66 GGATGTTTGCCTTA-GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTC
* * * * *
15171225 AGTAATGCCGTCGAAA-CACTTA-TTACTCACTTTAAATGGC
130 ACTCATGCCTTCGAAAGC-C-TAGTTACTCGCTTTAAATGGT
* * * *
15171265 TTTATAATCTTGTAAATGATTTTAAGGTGAATTACTTTGT-ATTTTTGGTTAAAATAGATCATAA
1 TTTATAATCTTATAAATGATTTTAAGTTGAATT--TTTTTCATTTTTGGTTAAAACAGATCATAA
* * * * * * * *
15171329 TTGGATGTTTACATTAGGAAACGTGAAGCAAAAGCCAACCATAGATATGAAAAGTCCATTTATTG
64 TTGGATGTTTGCCTTA-GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAG
* * * * * * * *
15171394 TTAGTCATG-CTTCAAAAGACTAGTTTCTCACTTTAAGTAG-
128 TCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGT
* * * * * *
15171434 TTTACAATCTTATCAATGATTTTAAATTGAATTGTTTTTTCATTTTTGGTTCAAATAGACCATAA
1 TTTATAATCTTATAAATGATTTTAAGTTGAA-T-TTTTTTCATTTTTGGTTAAAACAGATCATAA
* * * * ** * *
15171499 TTGGATGTTTGCCTCAAGAAACATGCAGCGAACGATATCCATTGACAAAAAAACTCCATTTATAG
64 TTGGATGTTTGCCT-TAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAG
* * * * * * * *
15171564 TCACTCATACCTTCAAAAGACTAATTATTTGCATTCAATGGT
128 TCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGT
* * * * * *
15171606 TTTATAATCTTATAAATGATGTTAAGTTTATTTTTTTTAATTTTTAGTTAAAACATATCATAATT
1 TTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTCATTTTTGGTTAAAACAGATCATAATT
* * * * *
15171671 GGATATTTGCCTTAGGAAGCTTGAAGCGTAAA-TCATCAATTGACAAGAAAAGTCCATTTATAGT
66 GGATGTTTGCCTTA-GAAACGTGAAGCG-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
* * * *
15171735 CA-TCCAT-CCATTTGAAACCCT-GATTTCTCGATTTAAATGGT
129 CACT-CATGCC-TTCGAAAGCCTAG-TTACTCGCTTTAAATGGT
* * * * *
15171776 TTTACATTCCTATAAATGATTTTAAGCTGAATTGTTTTTCATTTTTGGCTAAAACAGATCATAAT
1 TTTATAATCTTATAAATGATTTTAAGTTGAATT-TTTTTCATTTTTGGTTAAAACAGATCATAAT
* * * * * * *
15171841 TAGATGTTTGCCTTGAGAAATGAGAAGCGAAAGTCATCCATTGA-TAGAAAAAGTTCATTTACAG
65 TGGATGTTTGCCTT-AGAAACGTGAAGCGAAAGCCATCCATTGACAAG-AAAAGTCCATTTATAG
* * * * *
15171905 TCAATAATGCCTTCGAAACACCT-GTTACTCACTTTAAATAGT
128 TCACTCATGCCTTCGAAA-GCCTAGTTACTCGCTTTAAATGGT
* * * * *
15171947 TTTATAATCTTGTAAATGATTTTAAGTTGAATTTTTTTCATTTGTAGCTAAAACAGATAATAATT
1 TTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTCATTTTTGGTTAAAACAGATCATAATT
* * * * * *
15172012 GGGTGTTTGCCTCATGAAACATGAAGCAAAAGCCATCCATTAAGAAGAAAAGTCCATTTATAGTC
66 GGATGTTTGCCTTA-GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTC
* * * * *
15172077 ACTCATGCCTTCGAAAGACTAATTTCACACTTTAAATGGT
130 ACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGT
* * * *
15172117 TTTATAATCTTATAAATGATTTCAA-CTGATTTTGTTTTCATTTTTGGTTAAAACATATCATAAT
1 TTTATAATCTTATAAATGATTTTAAGTTGAATTT-TTTTCATTTTTGGTTAAAACAGATCATAAT
15172181 TGGATGTTTGCCTTAAGAAACGTGAAGCGAAAGCCATCCATT-----G---A---C-TTTATAGT
65 TGGATGTTTGCCTT-AGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
* * * *
15172234 CACTCATG-CTCCAAAAGACTAGTTACTTGCTTTAAATGGT
129 CACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGT
* *
15172274 TTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTATCATTTTTGGATAAAACATATCATAA
1 TTTATAATCTTATAAATGATTTTAAGTTGAA-TTTTTT-TCATTTTTGGTTAAAACAGATCATAA
* ** * *
15172339 TTGAATGTTTGCCTTGAGAAACGAAAAGCGATAGCCATCCATTAACAAGAAAAGTCCATTTATAG
64 TTGGATGTTTGCCTT-AGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAG
* *
15172404 TCACTCATGCCTTCGAAAGGCTTGTTACTCGCTTTAAATGGT
128 TCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGT
* * *
15172446 TTGATAATCTTGTAAATGATTTTAAGTTGAATTTTTTTTCAGTTTTGGTTAAAACAGATCATAAT
1 TTTATAATCTTATAAATGATTTTAAGTTGAA-TTTTTTTCATTTTTGGTTAAAACAGATCATAAT
* * * * *
15172511 TGGATGTTTTCCTTGAGAAACATGAAACGAAAGCCATCCATTGAGAAGACAAGTCCATTTATAGT
65 TGGATGTTTGCCTT-AGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
* * * * *
15172576 CACCCATGCCTTCAAAAGGCTAGTTACTCGCTTTCAATGAT
129 CACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGT
* * * *
15172617 TTTATAATCTTATAAATGATTTTAAGTT---TATTTTTAATTTTTAGTTAAAACATATCATAATT
1 TTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTCATTTTTGGTTAAAACAGATCATAATT
* * * * * * * ** *
15172679 GCATGTTTGACTTGGGAA-GTGAGAAGGGTAAA-TCTTAAATTGACAAGAAAAGTTCATTTATAG
66 GGATGTTTGCCTTAGAAACGT--GAAGCG-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAG
* * * * *
15172742 TCATTCATGCCTTC-AAAGCCCTAGTTTCTGGGATTT-AATTGT
128 TCACTCATGCCTTCGAAAG-CCTAGTTACT-CGCTTTAAATGGT
* * * *
15172784 TTTACAATCTTATAAATGATTTT-AGTTGATTTTTTTTCATTTTTGGCTAAAACAAATCATAATT
1 TTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTCATTTTTGGTTAAAACAGATCATAATT
* * * * * * * * *
15172848 GAATGTTTGCCTCAGGAAATGAGAAGCAAAAGCCATCCATTGGCAAGAAAAGTCTATTTACAATC
66 GGATGTTTGCCTTA-GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTC
* * * * *
15172913 AGTAATGCCGTCGAAA-CACTTA-TTACTCACTTTAAATGGC
130 ACTCATGCCTTCGAAAGC-C-TAGTTACTCGCTTTAAATGGT
* * * *
15172953 TTTATAATCTTGTAAATGATTTTAAGGTGAATTACTTTGT-ATTTTTGGTTAAAATAGATCATAA
1 TTTATAATCTTATAAATGATTTTAAGTTGAATT--TTTTTCATTTTTGGTTAAAACAGATCATAA
* * * * * * * *
15173017 TTGGATGTTTACATTAGGAAACGTGAAGCAAAAGCCAACCATAGATATGAAAAGTCCATTTATTG
64 TTGGATGTTTGCCTTA-GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAG
* * * * * * * *
15173082 TTAGTCATG-CTTCAAAAGACTAGTTTCTCACTTTAAGTAG-
128 TCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGT
* * * * * *
15173122 TTTACAATCTTATCAATGATTTTAAATTGAATTGTTTTTTCATTTTTGGTTCAAATAGACCATAA
1 TTTATAATCTTATAAATGATTTTAAGTTGAA-T-TTTTTTCATTTTTGGTTAAAACAGATCATAA
* * * * ** * *
15173187 TTGGATGTTTGCCTCAAGAAACATGCAGCGAACGATATCCATTGACAAAAAAACTCCATTTATAG
64 TTGGATGTTTGCCT-TAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAG
* * * * * *
15173252 TCACTCATACCTTCAAAAGACTAGTTATTCGCATTCAATGGT
128 TCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGT
* * * * * *
15173294 TTTATAATCTTATAAATGATGTTAAGTTTATTTTTTTTAATTTTTAGTTAAAACATATCATAATT
1 TTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTCATTTTTGGTTAAAACAGATCATAATT
* * * * * *
15173359 GGATATTTGCCTTAGGAAGCGTGAAGTGTAAA-TCATCAACTGACAAGAAAAGTCCATTTATAGT
66 GGATGTTTGCCTTA-GAAACGTGAAGCG-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
* * * * * *
15173423 CATTCAT-CCATTTGAAACCCTGGTTTCTCGATTTAAATGGT
129 CACTCATGCC-TTCGAAAGCCTAGTTACTCGCTTTAAATGGT
* * * *
15173464 TTTATATTCCTATAAATGATTTTAAGCTGAATTGTTTTTCATTTTTGGCTAAAACAGATCATAAT
1 TTTATAATCTTATAAATGATTTTAAGTTGAATT-TTTTTCATTTTTGGTTAAAACAGATCATAAT
* *** *
15173529 TGGATGTCTGCCTTGAGAAATAAGAAGCGAAAGCCATCCATTGAC-AGAAAAAGTCCATTTACAG
65 TGGATGTTTGCCTT-AGAAACGTGAAGCGAAAGCCATCCATTGACAAG-AAAAGTCCATTTATAG
* * *
15173593 TCAATAATGCCTTCGAAA-CACTTA-TTACTCACTTTAAATGGT
128 TCACTCATGCCTTCGAAAGC-C-TAGTTACTCGCTTTAAATGGT
* * * * * *
15173635 TTTATAATCTTGTAAATGATTTTAAGTTGAGTGTTTTTCATTTTTAGCTAAAACAGATAATAATT
1 TTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTCATTTTTGGTTAAAACAGATCATAATT
* * * * *
15173700 GGGTGTTTGCCTCGT-GAAACATGAAGCAAAAGCCATCCATTAAGAAGAAAAGTCCATTTATAGT
66 GGATGTTTGCCT--TAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
* * * * *
15173764 CACTCATGCCTTCGAAAGACTAATTTCACACTTTAAATGGT
129 CACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGT
** * *
15173805 TTTATAATCTTATAAATGATTTTAAGTTGGCTTTGTTTTTATTTTTGGTTAAAACAGATAATAAT
1 TTTATAATCTTATAAATGATTTTAAGTTGAATTT-TTTTCATTTTTGGTTAAAACAGATCATAAT
* * *
15173870 TGGATGTTTGCCTTGGGAAACATGGAGCGAAAGCCATCCATTGACAATG-AAAGTCCATTTATAG
65 TGGATGTTTGCCTT-AGAAACGTGAAGCGAAAGCCATCCATTGACAA-GAAAAGTCCATTTATAG
* * * * *
15173934 TCACTCATG-CGTCAAAAGACTAGTTACTTGCTTTTAATGGT
128 TCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGT
15173975 TTTATAATCTTATAAATGA-TTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGA-CATAAT
1 TTTATAATCTTATAAATGATTTTAAGTTGAA-TTTTTTTCATTTTTGGTTAAAACAGATCATAAT
* * * * * *
15174038 TGGATGTTTGCATTGGAAAACGTGAAGCAAAAGCTATTCATTCACAAGAAAAGTCCATTTATAGT
65 TGGATGTTTGCCTTAG-AAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
* * * * * *
15174103 CACTTAT-TCTTTGAAAGACTAGTTGCTCTCTTTAAATGGT
129 CACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGT
* * * *** * *
15174143 CTTATAATCTTATCAATGATTCTAAGTTGAATTTGTTTTTCATTTTTCACTACAACAGATCAGAA
1 TTTATAATCTTATAAATGATTTTAAGTTGAA-TT-TTTTTCATTTTTGGTTAAAACAGATCATAA
* * * * * *
15174208 TTGAATGTTAT-CCTTGAGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAGGACCATTTATC
64 TTGGATGTT-TGCCTT-AGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATA
* * * * *
15174272 GTCATTCATGCCTTTGAAAGACC-AATTACTTGCTTTAAACGGT
127 GTCACTCATGCCTTCGAAAG-CCTAGTTACTCGCTTTAAATGGT
* * * * *
15174315 ATTATAATCTTATCAATGATTTTAAGTT-TATTTTTTTTATTTTTGATTAAAACAGATCATAATT
1 TTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTCATTTTTGGTTAAAACAGATCATAATT
* * * * *
15174379 GGATGTTTGCCTCCAAAAACGTGAAGCAAAAGCCATCTATTGACAATAAAAGTCCATTTATAGTC
66 GGATGTTTGCCT-TAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTC
* * * * *
15174444 AATTATG-CTTCAAAAGACTAGTTACTTGCTTTAAATGG-
130 ACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGT
* * *
15174482 TTTATAATCTTATAAATGATTTTAAGTTGATTTTTTTTCATTTTTGGATAAAATAGATCATAATT
1 TTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTCATTTTTGGTTAAAACAGATCATAATT
* * ** * *
15174547 GGATGTTTGCCTTGGGACACAAGAAGTGAAAGCCATCCATTGACAAGAAAAGTTCATTTATAGTC
66 GGATGTTTGCCTT-AGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTC
* * *** * * *
15174612 TCTCATACCTTTTCAAGACTTGTTACTCGCTTTAAATGAT
130 ACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGT
* * *
15174652 TTTATAATCTTGTAAATGATTTTAAGTTGATTTTTTTTTCATTTTTGGTTTAAACAGATCATAAT
1 TTTATAATCTTATAAATGATTTTAAGTTGA-ATTTTTTTCATTTTTGGTTAAAACAGATCATAAT
* * * * * *
15174717 TGGATGTTTACCTTGAGAAACGTGAAGCGAAAGCCATCTATTAAGAATAAAAGTCTATTTAT
65 TGGATGTTTGCCTT-AGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTAT
15174779 TATCACAACC
Statistics
Matches: 6692, Mismatches: 1329, Indels: 500
0.79 0.16 0.06
Matches are distributed among these distances:
156 1 0.00
157 102 0.02
158 42 0.01
159 130 0.02
162 2 0.00
164 2 0.00
165 4 0.00
166 22 0.00
167 258 0.04
168 334 0.05
169 868 0.13
170 2088 0.31
171 2288 0.34
172 309 0.05
173 226 0.03
174 16 0.00
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.38
Consensus pattern (169 bp):
TTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTCATTTTTGGTTAAAACAGATCATAATT
GGATGTTTGCCTTAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCA
CTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGT
Found at i:15167586 original size:341 final size:341
Alignment explanation
Indices: 15166708--15174106 Score: 1200
Period size: 341 Copynumber: 21.8 Consensus size: 341
15166698 TTTAAAATTG
* * * * * * *
15166708 AATTT-TTCTCATTTTTGGTTAAAACATATCATAATTTGATGTTTTCAT-CGAGAAACATTAAGA
1 AATTTCTT-TCATTTTTGGTTAAAACAAATCATAATTTCATCTTTGCATAAG-GAAACGTCAA-A
* * * * *** * * * * *
15166771 -GAAAGCCATCCATTGATAAGAAAAGTTCATTTATGGTTAATCACGCCTTCAAAAGCCTCGTTAC
63 CAAAAGCCATCCATTGACAACAAAAGTCCATTTACACTCACTCAAGCCTTC-AAAGCCTAGTCAC
** * * * * *
15166835 TTGCTTTCAGTGGTTTTATAA-CTTTATAAATGATT-TTAAATTGAATTTTT-T-TTTGCATTTT
127 TCACTTTAAATGGTTTTACAATC-TTATAAATGATTATAAAATTCAATTTTTCTCTTT---TTTT
* * * * * * * * *
15166896 AGCTTAAAATAGATCATAATTGGATGTTTGCATTGGGAGACGTGAAGAAAAAGCCATCCATTGGC
188 -G-TTAAAACATATCGTAATTTGATGTTTACATTGAGAAACATGAAGAAAAAGCCATCCATTGAC
* * * * * * *
15166961 AAGAAAAGTCCACTTATAGTTACTCATGCCTTCAAAAGCCTTGTTATTCAGTTTAAGTGGTTTTA
251 AAGAAAAGTCCACTTATAGTCACTCACGCATTCAAAAGCCTTATTACTCAGTTTAAGTGATCTTA
*
15167026 TAACTATATAAATGATTTTAAGTTGA
316 TAACTATATAAATCATTTTAAGTTGA
* * * ** * **
15167052 AATTTCTTTCATTTTTGGTTAAAACATATCATAATTTCTTGTTTGCATTGGGAAATGTCAAATGA
1 AATTTCTTTCATTTTTGGTTAAAACAAATCATAATTTCATCTTTGCATAAGGAAACGTCAAACAA
* * * *
15167117 AAGCCATCCATTGACAAGAAAAGTCCATTTATACTCACTCAAGCCTTCAAAGCCTAGTTACTCTC
66 AAGCCATCCATTGACAACAAAAGTCCATTTACACTCACTCAAGCCTTCAAAGCCTAGTCACTCAC
* *
15167182 TTTAAATGGTTTTATAATCTTATAAATGATTATAAAATTGAATTTTTCTCTTTTTTTGTTAAAAC
131 TTTAAATGGTTTTACAATCTTATAAATGATTATAAAATTCAATTTTTCTCTTTTTTTGTTAAAAC
* * * * **
15167247 A-ATTTGTAATTTGATGTTTACATTGAGAAACATGAAGCAAAATCTATCCATTGATGAGAAAAGT
196 ATA-TCGTAATTTGATGTTTACATTGAGAAACATGAAGAAAAAGCCATCCATTGACAAGAAAAGT
* * * *
15167311 CCATTTATAGTCACTCACGTATTCGAAAGCCTTATTACTC-GCTTTAAGTGATCTTATAACTTTA
260 CCACTTATAGTCACTCACGCATTCAAAAGCCTTATTACTCAG-TTTAAGTGATCTTATAACTATA
15167375 TAAATCATTTTCAA-TTG-
324 TAAATCATTTT-AAGTTGA
* * * * * * *
15167392 AATTTTTTTCATTTTTGGTTAATACAAATTATAATTTGATCTTTGTATAAGGAAACGTGAAGCAA
1 AATTTCTTTCATTTTTGGTTAAAACAAATCATAATTTCATCTTTGCATAAGGAAACGTCAAACAA
* * * * * * * * *
15167457 AAGCCATTCATTGATAACAAATGTCCATTTGCAGTCACTCATGTCTTTGAAAGCGTAGTCACTCA
66 AAGCCATCCATTGACAACAAAAGTCCATTTACACTCACTCAAG-CCTTCAAAGCCTAGTCACTCA
* * * * *
15167522 CTTTAAATGGTTTTGCAATCTTTTAAATGGTT-TTAAGTTCAATTTTT-T-TTTACTTTTGGTTA
130 CTTTAAATGGTTTTACAATCTTATAAATGATTATAAAATTCAATTTTTCTCTTT--TTTT-GTTA
* * * ** * ** * *
15167584 AAACATATCGTAATTTAATGTTTGCATCT-AAAAATGTGCAGCGAAAGCCATTCATTGGCAAGAA
192 AAACATATCGTAATTTGATGTTTACAT-TGAGAAACATGAAGAAAAAGCCATCCATTGACAAGAA
* * * * * ** * * * *
15167648 ATGTCCACTTATAGTCATTTATGCCTTTGAAAGCCTTGTTACTCACTCTAAGTGGAT-TTATCAT
256 AAGTCCACTTATAGTCACTCACGCATTCAAAAGCCTTATTACTCAGTTTAAGT-GATCTTAT-AA
*
15167712 CT-TATAAATGATTTTAAGTTGA
319 CTATATAAATCATTTTAAGTTGA
* * * ** * ** * * *
15167734 ATTTTCTTTCATTTTTAGTTAAAACATATCATAATTTGTTATTTGCATTGGGAAATGTTAAGA-G
1 AATTTCTTTCATTTTTGGTTAAAACAAATCATAATTTCATCTTTGCATAAGGAAACGTCAA-ACA
* * * ** * * ** *
15167798 AAAGCTATCCATTGACAATAAAAGTCAATTTGTAGTCAATCATCCCTTCGAAAGCCCTA-TTACT
65 AAAGCCATCCATTGACAACAAAAGTCCATTTACACTCACTCAAGCCTTC-AAAG-CCTAGTCACT
* * * * * * * * *
15167862 CACTGTAAGTGGTTTTATAA-CTTTATTAATGATT-TGAAATTGAATTTGTTTTCATTTTTGGTT
128 CACTTTAAATGGTTTTACAATC-TTATAAATGATTATAAAATTCAATTT-TTCTCTTTTTTTGTT
* * * * * ** * * * * *
15167925 AAAA-AAATCATAATTTGGTATTTGCATCAAGAAA-GTCGTAGAGAAAG-CAGCCTATTGAGAAG
191 AAAACATATCGTAATTTGATGTTTACATTGAGAAACAT-GAAGAAAAAGCCATCC-ATTGACAAG
* ** * * * * ** * *
15167987 AAAAG-CCTATTTATAGTCGTTGATGCCTTCGAAAGCC-TAGCCACTCTA-TTTAAATGGT-TTA
254 AAAAGTCC-ACTTATAGTCACTCACGCATTCAAAAGCCTTA-TTACTC-AGTTTAAGTGATCTTA
* * *
15168048 GTAATCT-TACAAATGATTTTGAGTTGA
316 -TAA-CTATATAAATCATTTTAAGTTGA
* * * * * * * ** * * *
15168075 ATTTTGTTTTTCATTTTTGGCTAAAACAACTTATAATTT-ATTGTTTCCATTGGGAAACATGAAG
1 A-ATT-TCTTTCATTTTTGGTTAAAACAAATCATAATTTCA-TCTTTGCATAAGGAAACGTCAAA
* * * * * ** * *
15168139 CAAAACCCATCCATTGAGAAGAAAAGTCCATTTATAATCACTCATCCCTTCGAAAGCTTAGTTAC
63 CAAAAGCCATCCATTGACAACAAAAGTCCATTTACACTCACTCAAGCCTTC-AAAGCCTAGTCAC
* * * * * * * * * **
15168204 TCGCTTTAAAT-GTTCTAATAATCTTAAAAATGACTT-T-CAACTGAATTGTTTTTCATTTTAGG
127 TCACTTTAAATGGTT-TTACAATCTTATAAATGA-TTATAAAATTCAATT-TTTCTCTTTTTTTG
* * * * * * ** ** *
15168266 CTAAAACAAATCATAATTTG-TAATTTGCATTGAGAAACGTGAAGCGAAAGGTATCCATTGATAA
189 TTAAAACATATCGTAATTTGAT-GTTTACATTGAGAAACATGAAGAAAAAGCCATCCATTGACAA
* * * * * * * * *
15168330 GAAAAGTTCATTTATAGTAACTCATGCCTTCAAAAGAC-TAGTTACTCACTTTAAAT-AGTTTTA
253 GAAAAGTCCACTTATAGTCACTCACGCATTCAAAAGCCTTA-TTACTCAGTTTAAGTGA-TCTTA
* * *
15168393 TAATCT-TGTAAATGATCTTAAGTTG-
316 TAA-CTATATAAATCATTTTAAGTTGA
* * * ** ** * ** * * * *
15168418 AATTCTTTTTCATTTTTGGCTAAAATAGGTCATAATTGGATGC-TAGTTTCACGAAACGTGAAGC
1 AATT-TCTTTCATTTTTGGTTAAAACAAATCATAATTTCAT-CTTTGCATAAGGAAACGTCAAAC
* * * * * * * * ** *
15168482 GAAAGCCATCAATTGACAAGAAAAATACATTTATAGTCACT-AATTCCTTCAAAAAACTAGTTAC
64 AAAAGCCATCCATTGACAACAAAAGTCCATTTACACTCACTCAA-GCCTTC-AAAGCCTAGTCAC
** * * * * * * *
15168546 TCACTTTAAATACTTTTATAATCTTATAAATGATT-TTAAGTTGAATTTTTTTCTTTTTTAGCTA
127 TCACTTTAAATGGTTTTACAATCTTATAAATGATTATAAAATTCAATTTTTCTCTTTTTTTGTTA
* * * * * * **
15168610 AAACATATCATAATTGGATG-TTAGCCTTGAGAAACGTGAAGCAAAAGCCATCTAAGGACAAGAA
192 AAACATATCGTAATTTGATGTTTA-CATTGAGAAACATGAAGAAAAAGCCATCCATTGACAAGAA
* * * * * * * * * * *
15168674 ATGTCCATTTATAGTCAC-CATGCCTTTAAAAGAC-TAGTTACTCACTTTAAATGGTTTTGTAAT
256 AAGTCCACTTATAGTCACTCACGCATTCAAAAGCCTTA-TTACTCAGTTTAAGTGATCTTATAA-
*
15168737 CT-TATAAATGATTTTAAGTTG-
319 CTATATAAATCATTTTAAGTTGA
* * * * * ** * * ** * * *
15168758 -ATTTTTTTCTTTTTTGGCTAAAATAGATCATAATTGGATGTTTGCCTTGGGAAACATGAAGCAA
1 AATTTCTTTCATTTTTGGTTAAAACAAATCATAATTTCATCTTTGCATAAGGAAACGTCAAACAA
* * * * * * * * * *
15168822 AAGCCATCCATTGAGAAGAAAATTCCATTT-CTAGTTACTCATGTCTTCGAAAGACTTGTTACTC
66 AAGCCATCCATTGACAACAAAAGTCCATTTAC-ACTCACTCAAGCCTTC-AAAGCCTAGTCACTC
* * * * * * ** ** *
15168886 GCTTTAAATAGTTTTATAATCTTGTATATGATTTTAAGCTGAAATTTTT-T-TTGTTTTTGGATA
129 ACTTTAAATGGTTTTACAATCTTATAAATGATTATAAAATTCAATTTTTCTCTT-TTTTT-GTTA
* * * * * * * * *
15168949 GAGCATATCATAATTGGATGTTTGTC-TT-AGGAAACGTGAAGCAAAA-CTCATCCATTGATAAA
192 AAACATATCGTAATTTGATGTTT-ACATTGA-GAAACATGAAGAAAAAGC-CATCCATTGACAAG
* * * * * ** * ** * *
15169011 AAAAGTCCATTTATTGTCGCTCATGCCTTTGAAAGGC-TAGTTACTCACCTTAAAT-AGTTTTAT
254 AAAAGTCCACTTATAGTCACTCACGCATTCAAAAGCCTTA-TTACTCAGTTTAAGTGA-TCTTAT
* *
15169074 AATCT-CATAAATGATTTTAAGTTG-
317 AA-CTATATAAATCATTTTAAGTTGA
* * * * ** * * * **
15169098 AATTTTTTTCATTTTTAGTTAATACATATCATAATTGGATGTTTGTC-TCAA-GAAATGTGATGC
1 AATTTCTTTCATTTTTGGTTAAAACAAATCATAATTTCATCTTTG-CAT-AAGGAAACGTCAAAC
** * * * * * * * *
15169161 AAAAGTAATCCATTGACAAAAAAAGTCCATATATAGTCGCTCATGCCTTCGAAATCCTAGTTACT
64 AAAAGCCATCCATTGACAACAAAAGTCCATTTACACTCACTCAAGCCTTC-AAAGCCTAGTCACT
* * * * * * ** * *
15169226 CACCTTAAGTGATTTTATAA-CTT-TAACAATAATT-TTAAATTGTATTTTTTTATTTTTTTGTT
128 CACTTTAAATGGTTTTACAATCTTAT-A-AATGATTATAAAATTCAATTTTTCTCTTTTTTTGTT
* * * * ** * * * *
15169288 AAAACAGAACATCATTTGATGTTTACATT-AGGAAACATGAAG-TGAAGTCTATCAATTGTCCA-
191 AAAACATATCGTAATTTGATGTTTACATTGA-GAAACATGAAGAAAAAG-CCATCCATTGACAAG
* ** * * * * ** * * * *
15169350 AAAAGTTCGTTTATAGTCACTTATGCCTTCAAAAGAC-TAGGGACTC-GTATTAAATGGTTTTGT
254 AAAAGTCCACTTATAGTCACTCACGCATTCAAAAGCCTTA-TTACTCAGT-TTAAGTGATCTTAT
**
15169413 AATCT-TATAAAGGATTTTAAGTTGA
317 AA-CTATATAAATCATTTTAAGTTGA
* * * * * * ** * ** * *
15169438 ATTTTTTTTCATTTTTCGCTAAAATAGAT-ATAATTAGATGTTAACCACT--GGAAACATGAAAC
1 AATTTCTTTCATTTTTGGTTAAAACAAATCATAATTTCATCTT-TGCA-TAAGGAAACGTCAAAC
* * * * * * * * * * * *
15169500 GAAAGCCATCGATTGACAAGAAAATTTCATTTATAGTTAGT-AATTCCTTCAAAAGACTAGTTAC
64 AAAAGCCATCCATTGACAACAAAAGTCCATTTACACTCACTCAA-GCCTTC-AAAGCCTAGTCAC
* * * * * * * * * *
15169564 -AAGCTTTAAATAGTTTTATAACCTTATAAATGATT-TTAAGTTGAATTCTTTTTCATTTTTAGT
127 TCA-CTTTAAATGGTTTTACAATCTTATAAATGATTATAAAATTCAATT-TTTCTCTTTTTTTGT
* * * * * ** * *
15169627 TAAAAAAGATCATAATTAGATGTTTACCTTGAGAAACATGAAGCGAAAGCCCTCCATCGACAAGA
190 TAAAACATATCGTAATTTGATGTTTACATTGAGAAACATGAAGAAAAAGCCATCCATTGACAAGA
* * * * ** * * * * *
15169692 AAAGTTCATTTATAGTCACTCATGCCTTCGGAAGAC-TAGTTACTCACTTTCAA-TGGTTTTACA
255 AAAGTCCACTTATAGTCACTCACGCATTCAAAAGCCTTA-TTACTCAGTTT-AAGTGATCTTATA
*
15169755 ATCT-TATAAATGATTTTAAGTTG-
318 A-CTATATAAATCATTTTAAGTTGA
* * * * ** * * ** *
15169778 ATTTTTTTTCATTTTTAGTTAAAACATATCATAATTGGATGTTTGCCTTGGGAAGCGT-AAAGCA
1 AATTTCTTTCATTTTTGGTTAAAACAAATCATAATTTCATCTTTGCATAAGGAAACGTCAAA-CA
* * * * * * * * *
15169842 AAAGCCATCAATTGACAAGAAAAGTCCATTTAGAGTCATTCATGCATTTGAAAGCCTA-TTACTC
65 AAAGCCATCCATTGACAACAAAAGTCCATTTACACTCACTCAAGC-CTTCAAAGCCTAGTCACTC
** * * * * * * * * *
15169906 GGTTTAAATGGTTTTATAATCTTAGAAATGATT-TTAAGTTCAATTTTTTTCATTTTTGGCTGAA
129 ACTTTAAATGGTTTTACAATCTTATAAATGATTATAAAATTCAATTTTTCTCTTTTTTTGTTAAA
* * ** * ** * *
15169970 ACAAATCATAATCGGATG-TTAGCCTCAAGAAACGTGAAGCGAAAATG--ATCCATTGACAAGAA
194 ACATATCGTAATTTGATGTTTA-CATTGAGAAACATGAA--GAAAAAGCCATCCATTGACAAGAA
* * * * ** ** * * *
15170032 AAGTCCATTTATAGTCAGTAATGTTTTTGAAAGAC-TAGTTACTCACG-TTAAATAGATC--ACA
256 AAGTCCACTTATAGTCACTCACGCATTCAAAAGCCTTA-TTACTCA-GTTTAAGT-GATCTTATA
* *
15170093 ATCT-TATAAGTGATTTTAAGTTGA
318 A-CTATATAAATCATTTTAAGTTGA
* * * * * * ** * * * * * *
15170117 ATTTTATTTCATTTTTGGGTAAAATAGATAATAATTGGATGTTTACCT-TGGAAAACGTTAAACG
1 AATTTCTTTCATTTTTGGTTAAAACAAATCATAATTTCATCTTTGCATAAGG-AAACGTCAAACA
** * * * * * * * *
15170181 AAAGCCATCCATCAAAAAGAAAAGTCCATTTGCAGTCACTCATGCCTTTGAAAGACATATTC-CT
65 AAAGCCATCCATTGACAACAAAAGTCCATTTACACTCACTCAAGCC-TTCAAAG-CCTAGTCACT
** * * * * * * *
15170245 TGCTTTAAATGGTTTTATAATCTTGTAAATGATT-TTAAGTT-AACTTTTTTTTCATTTTTGGTT
128 CACTTTAAATGGTTTTACAATCTTATAAATGATTATAAAATTCAA--TTTTTCTCTTTTTTTGTT
* * * * * ** * * *
15170308 AAAACAAATCATAATTGGATGTTTGCCTCAAGAAACGA-GAAGCAAAAGCCATCCATTGAGAAGG
191 AAAACATATCGTAATTTGATGTTTACATTGAGAAAC-ATGAAGAAAAAGCCATCCATTGACAAGA
* * * ** ** * * * *
15170372 AAAGTCCATTTATAGTCACTCATGCCTTTGAAATACTAATTA--CATGCTTTAAATGGTTTTATA
255 AAAGTCCACTTATAGTCACTCACGCATTCAAAAGCCTTATTACTCA-G-TTTAAGTGATCTTATA
* *
15170435 ATCT-TATAAATGATTTCAAGTTG-
318 A-CTATATAAATCATTTTAAGTTGA
* * ** ** * * * * *
15170458 ATTTTGTTTCATTTTTGGTTAAAACTTATCATAATTGGATGTTTTCCTTAA-GAAACGTGAAGCA
1 AATTTCTTTCATTTTTGGTTAAAACAAATCATAATTTCAT-CTTTGCATAAGGAAACGTCAAACA
* * * * * * *
15170522 AAAGCCATCCATTG--------A---C-TTTATAGTCACTCATG-CTCCAAAAGACTAGTTACTT
65 AAAGCCATCCATTGACAACAAAAGTCCATTTACACTCACTCAAGCCTTC-AAAGCCTAGTCACTC
* * * * * * * * *
15170574 GCTTTAAATGGTTTTATAATCTTATAAATGATT-TTAAGTTGAATATTTTTATCATTTTTGGATA
129 ACTTTAAATGGTTTTACAATCTTATAAATGATTATAAAATT-CA-ATTTTTCTCTTTTTTTGTTA
* * * * *
15170638 AAACATATCATAA-TTGAATGTTTGCCTTGAG-AA-ATGAA-AAGCGATAGCCATCCATTAACAA
192 AAACATATCGTAATTTG-ATGTTTACATTGAGAAACATGAAGAA---AAAGCCATCCATTGACAA
* * * * * * * * *
15170699 GAAGAGTCCATTTATAGTCACTCATGCCTTCGAAAGGCTTGTTACTC-GCTTTAAATGGT-TTGA
253 GAAAAGTCCACTTATAGTCACTCACGCATTCAAAAGCCTTATTACTCAG-TTTAAGTGATCTT-A
* *
15170762 TAATCT-TGTAAATGATTTTAAGTTGA
316 TAA-CTATATAAATCATTTTAAGTTGA
* * * * ** * * * * * * *
15170788 ATTTTTTTTCAGTTTTGGTTAAAACAGATCATAATTGGATGTTTTCCT-TGAGAAACATGAAACG
1 AATTTCTTTCATTTTTGGTTAAAACAAATCATAATTTCATCTTTGCATAAG-GAAACGTCAAACA
* * * * * * * * *
15170852 AAAGCCATCCATTGAGAAGACAAGTCCATTTATAGTCACCCATGCCTTCAAAAGGCTAGTTACTC
65 AAAGCCATCCATTGACAACAAAAGTCCATTTACACTCACTCAAGCCTTC-AAAGCCTAGTCACTC
* * * * * * * ** *
15170917 GCTTTCAATGATTTTATAATCTTATAAATGATT-TTAAGTT-TA-TTTT-TAATTTTTAGTTAAA
129 ACTTTAAATGGTTTTACAATCTTATAAATGATTATAAAATTCAATTTTTCTCTTTTTTTGTTAAA
* * ** ** * * **
15170978 ACATATCATAA-TTGCATGTTTGAC-TTGGGAAGTGA-GAAGGGTAAA-TCTTAAATTGACAAGA
194 ACATATCGTAATTTG-ATGTTT-ACATTGAGAA-ACATGAA-GAAAAAGCCATCCATTGACAAGA
* * * * * * * ** * * *
15171039 AAAGTTCATTTATAGTCATTCATGCCTTC-AAAGCCCTAGTTTCTGGGATTTAATTG-TTTTACA
255 AAAGTCCACTTATAGTCACTCACGCATTCAAAAGCCTTA-TTACTCAG-TTTAAGTGATCTTATA
*
15171102 ATCT-TATAAATGATTTT-AGTTG-
318 A-CTATATAAATCATTTTAAGTTGA
* * * ** * * * * ** *
15171124 ATTTTTTTTCATTTTTGGCTAAAACAAATCATAATTGAATGTTTGCCTCAGGAAATGAGAAGCAA
1 AATTTCTTTCATTTTTGGTTAAAACAAATCATAATTTCATCTTTGCATAAGGAAACGTCAAACAA
* * * * * * *
15171189 AAGCCATCCATTGGCAAGAAAAGTCTATTTACAATCAGT-AATGCCGTCGAAA-CACTTA-TTAC
66 AAGCCATCCATTGACAACAAAAGTCCATTTACACTCACTCAA-GCCTTC-AAAGC-C-TAGTCAC
* * * * ** * * * *
15171251 TCACTTTAAATGGCTTTATAATCTTGTAAATGATT-TTAAGGTGAATTACTTTGT-ATTTTTGGT
127 TCACTTTAAATGGTTTTACAATCTTATAAATGATTATAAAATTCAATT--TTTCTCTTTTTTTGT
* * * * * * * * * *
15171314 TAAAATAGATCATAATTGGATGTTTACATT-AGGAAACGTGAAGCAAAAGCCAACCATAGATATG
190 TAAAACATATCGTAATTTGATGTTTACATTGA-GAAACATGAAGAAAAAGCCATCCATTGACAAG
* * * * * * * * *
15171378 AAAAGTCCATTTATTGTTAGTCATGC-TTCAAAAGAC-TAGTTTCTCACTTTAAGT-AGT-TTAC
254 AAAAGTCCACTTATAGTCACTCACGCATTCAAAAGCCTTA-TTACTCAGTTTAAGTGA-TCTTAT
* * *
15171439 AATCT-TATCAATGATTTTAAATTGA
317 AA-CTATATAAATCATTTTAAGTTGA
* * * * * * ** * * * *
15171464 ATTGTTTTTTCATTTTTGGTTCAAATAGACCATAATTGGATGTTTGCCTCAA-GAAACATGC-AG
1 AAT-TTCTTTCATTTTTGGTTAAAACAAATCATAATTTCATCTTTGCAT-AAGGAAACGT-CAAA
* * ** * * * * * * *
15171527 CGAACGATATCCATTGACAAAAAAACTCCATTTATAGTCACTCATA-CCTTCAAAAGACTAATTA
63 CAAAAGCCATCCATTGACAACAAAAGTCCATTTACACTCACTCA-AGCCTTC-AAAGCCTAGTCA
* ** * * * * * * * ** *
15171591 TTTGCATTCAATGGTTTTATAATCTTATAAATGATGT-T-AAGTTTATTTTTTTTAATTTTTAGT
126 CTCACTTTAAATGGTTTTACAATCTTATAAATGAT-TATAAAATTCAATTTTTCTCTTTTTTTGT
* * * * * * * ** * *
15171654 TAAAACATATCATAATTGGATATTTGCCTT-AGGAAGCTTGAAGCGTAAA-TCATCAATTGACAA
190 TAAAACATATCGTAATTTGATGTTTACATTGA-GAAACATGAAG-AAAAAGCCATCCATTGACAA
* ** * * * * *
15171717 GAAAAGTCCATTTATAGTCA-TCCATC-CATTTGAAACCCTGATTTCTC-GATTTAAATGGT-TT
253 GAAAAGTCCACTTATAGTCACT-CA-CGCATTCAAAAGCCTTATTACTCAG-TTTAAGTGATCTT
* * * *
15171778 -TACATTCCTATAAATGATTTTAAGCTG-
315 ATA-ACT-ATATAAATCATTTTAAGTTGA
* * * ** * * * * ** *
15171805 AATTGTTTTTCATTTTTGGCTAAAACAGATCATAATTAGATGTTTGCCT-TGAGAAATGAGAAGC
1 AATT-TCTTTCATTTTTGGTTAAAACAAATCATAATTTCATCTTTGCATAAG-GAAACGTCAAAC
* * * * * * * *
15171869 GAAAGTCATCCATTGATAGA-AAAAGTTCATTTACAGTCAAT-AATGCCTTCGAAACACCT-GTT
64 AAAAGCCATCCATTGACA-ACAAAAGTCCATTTACACTCACTCAA-GCCTTC-AAA-GCCTAGTC
* * * * * * * * * * *
15171931 ACTCACTTTAAATAGTTTTATAATCTTGTAAATGATT-TTAAGTTGAATTTTTTTCATTTGTAGC
125 ACTCACTTTAAATGGTTTTACAATCTTATAAATGATTATAAAATTCAATTTTTCTCTTTTTTTGT
* ** * * * * * * * *
15171995 TAAAACAGATAATAATTGGGTGTTTGC-CTCATGAAACATGAAGCAAAAGCCATCCATTAAGAAG
190 TAAAACATATCGTAATTTGATGTTTACATTGA-GAAACATGAAGAAAAAGCCATCCATTGACAAG
* * * * * * * * * * * *
15172059 AAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAATTTCACACTTTAAATGGTTTTATAA
254 AAAAGTCCACTTATAGTCACTCACGCATTCAAAAGCCTTATTACTCAGTTTAAGTGATCTTATAA
* * *
15172124 TCT-TATAAATGATTTCAA-CTG-
319 -CTATATAAATCATTTTAAGTTGA
* * * ** * * * *
15172145 ATTTTGTTTTCATTTTTGGTTAAAACATATCATAATTGGATGTTTGCCTTAA-GAAACGTGAAGC
1 AATTT-CTTTCATTTTTGGTTAAAACAAATCATAATTTCATCTTTG-CATAAGGAAACGTCAAAC
* * * * * * *
15172209 GAAAGCCATCCATTG--------A---C-TTTATAGTCACTCATG-CTCCAAAAGACTAGTTACT
64 AAAAGCCATCCATTGACAACAAAAGTCCATTTACACTCACTCAAGCCTTC-AAAGCCTAGTCACT
** * * * * * * * *
15172261 TGCTTTAAATGGTTTTATAATCTTATAAATGATT-TTAAGTTGAATTTTTTTATCATTTTTGGAT
128 CACTTTAAATGGTTTTACAATCTTATAAATGATTATAAAATTCAA--TTTTTCTCTTTTTTTGTT
* * * * ** * *
15172325 AAAACATATCATAA-TTGAATGTTTGCCTTGAGAAACGA-AAAGCGATAGCCATCCATTAACAAG
191 AAAACATATCGTAATTTG-ATGTTTACATTGAGAAAC-ATGAAGAAAAAGCCATCCATTGACAAG
* * * * * * * *
15172388 AAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGGCTTGTTACTC-GCTTTAAATGGT-TTGAT
254 AAAAGTCCACTTATAGTCACTCACGCATTCAAAAGCCTTATTACTCAG-TTTAAGTGATCTT-AT
* *
15172451 AATCT-TGTAAATGATTTTAAGTTGA
317 AA-CTATATAAATCATTTTAAGTTGA
* * * * ** * * * * * * *
15172476 ATTTTTTTTCAGTTTTGGTTAAAACAGATCATAATTGGATGTTTTCCT-TGAGAAACATGAAACG
1 AATTTCTTTCATTTTTGGTTAAAACAAATCATAATTTCATCTTTGCATAAG-GAAACGTCAAACA
* * * * * * * * *
15172540 AAAGCCATCCATTGAGAAGACAAGTCCATTTATAGTCACCCATGCCTTCAAAAGGCTAGTTACTC
65 AAAGCCATCCATTGACAACAAAAGTCCATTTACACTCACTCAAGCCTTC-AAAGCCTAGTCACTC
* * * * * * * ** *
15172605 GCTTTCAATGATTTTATAATCTTATAAATGATT-TTAAGTT-TA-TTTT-TAATTTTTAGTTAAA
129 ACTTTAAATGGTTTTACAATCTTATAAATGATTATAAAATTCAATTTTTCTCTTTTTTTGTTAAA
* * ** ** * * **
15172666 ACATATCATAA-TTGCATGTTTGAC-TTGGGAAGTGA-GAAGGGTAAA-TCTTAAATTGACAAGA
194 ACATATCGTAATTTG-ATGTTT-ACATTGAGAA-ACATGAA-GAAAAAGCCATCCATTGACAAGA
* * * * * * * ** * * *
15172727 AAAGTTCATTTATAGTCATTCATGCCTTC-AAAGCCCTAGTTTCTGGGATTTAATTG-TTTTACA
255 AAAGTCCACTTATAGTCACTCACGCATTCAAAAGCCTTA-TTACTCAG-TTTAAGTGATCTTATA
*
15172790 ATCT-TATAAATGATTTT-AGTTG-
318 A-CTATATAAATCATTTTAAGTTGA
* * * ** * * * * ** *
15172812 ATTTTTTTTCATTTTTGGCTAAAACAAATCATAATTGAATGTTTGCCTCAGGAAATGAGAAGCAA
1 AATTTCTTTCATTTTTGGTTAAAACAAATCATAATTTCATCTTTGCATAAGGAAACGTCAAACAA
* * * * * * *
15172877 AAGCCATCCATTGGCAAGAAAAGTCTATTTACAATCAGT-AATGCCGTCGAAA-CACTTA-TTAC
66 AAGCCATCCATTGACAACAAAAGTCCATTTACACTCACTCAA-GCCTTC-AAAGC-C-TAGTCAC
* * * * ** * * * *
15172939 TCACTTTAAATGGCTTTATAATCTTGTAAATGATT-TTAAGGTGAATTACTTTGT-ATTTTTGGT
127 TCACTTTAAATGGTTTTACAATCTTATAAATGATTATAAAATTCAATT--TTTCTCTTTTTTTGT
* * * * * * * * * *
15173002 TAAAATAGATCATAATTGGATGTTTACATT-AGGAAACGTGAAGCAAAAGCCAACCATAGATATG
190 TAAAACATATCGTAATTTGATGTTTACATTGA-GAAACATGAAGAAAAAGCCATCCATTGACAAG
* * * * * * * * *
15173066 AAAAGTCCATTTATTGTTAGTCATGC-TTCAAAAGAC-TAGTTTCTCACTTTAAGT-AGT-TTAC
254 AAAAGTCCACTTATAGTCACTCACGCATTCAAAAGCCTTA-TTACTCAGTTTAAGTGA-TCTTAT
* * *
15173127 AATCT-TATCAATGATTTTAAATTGA
317 AA-CTATATAAATCATTTTAAGTTGA
* * * * * * ** * * * *
15173152 ATTGTTTTTTCATTTTTGGTTCAAATAGACCATAATTGGATGTTTGCCTCAA-GAAACATGC-AG
1 AAT-TTCTTTCATTTTTGGTTAAAACAAATCATAATTTCATCTTTGCAT-AAGGAAACGT-CAAA
* * ** * * * * * *
15173215 CGAACGATATCCATTGACAAAAAAACTCCATTTATAGTCACTCATA-CCTTCAAAAGACTAGTTA
63 CAAAAGCCATCCATTGACAACAAAAGTCCATTTACACTCACTCA-AGCCTTC-AAAGCCTAGTCA
* * * * * * * * * ** *
15173279 TTCGCATTCAATGGTTTTATAATCTTATAAATGATGT-T-AAGTTTATTTTTTTTAATTTTTAGT
126 CTCACTTTAAATGGTTTTACAATCTTATAAATGAT-TATAAAATTCAATTTTTCTCTTTTTTTGT
* * * * * * * ** * * *
15173342 TAAAACATATCATAATTGGATATTTGCCTT-AGGAAGCGTGAAGTGTAAA-TCATCAACTGACAA
190 TAAAACATATCGTAATTTGATGTTTACATTGA-GAAACATGAAG-AAAAAGCCATCCATTGACAA
* * ** * ** * * * *
15173405 GAAAAGTCCATTTATAGTCATTCATC-CATTTGAAACCCTGGTTTCTC-GATTTAAATGGTTTTA
253 GAAAAGTCCACTTATAGTCACTCA-CGCATTCAAAAGCCTTATTACTCAG-TTTAAGTGATCTTA
* * * *
15173468 T-ATTCCTATAAATGATTTTAAGCTG-
316 TAACT-ATATAAATCATTTTAAGTTGA
* * * ** * * * * *
15173493 AATTGTTTTTCATTTTTGGCTAAAACAGATCATAATTGGATGTCTGCCT-TGAGAAA--TAAGAA
1 AATT-TCTTTCATTTTTGGTTAAAACAAATCATAATTTCATCTTTGCATAAG-GAAACGTCA-AA
* * *
15173555 GCGAAAGCCATCCATTGACAGA-AAAAGTCCATTTACAGTCAAT-AATGCCTTCGAAA-CACTTA
63 -CAAAAGCCATCCATTGACA-ACAAAAGTCCATTTACACTCACTCAA-GCCTTC-AAAGC-C-TA
* * * * * * * *
15173617 -TTACTCACTTTAAATGGTTTTATAATCTTGTAAATGATT-TTAAGTTGAGTGTTTT-TCATTTT
122 GTCACTCACTTTAAATGGTTTTACAATCTTATAAATGATTATAAAATTCAAT-TTTTCTCTTTTT
* * * ** * * * * * * * * *
15173679 TAGCTAAAACAGATAATAATTGGGTGTTTGCCTCGTGAAACATGAAGCAAAAGCCATCCATTAAG
186 TTGTTAAAACATATCGTAATTTGATGTTTACATTGAGAAACATGAAGAAAAAGCCATCCATTGAC
* * * * * * * * * * * *
15173744 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAATTTCACACTTTAAATGGTTTTA
251 AAGAAAAGTCCACTTATAGTCACTCACGCATTCAAAAGCCTTATTACTCAGTTTAAGTGATCTTA
*
15173809 TAATCT-TATAAATGATTTTAAGTTG-
316 TAA-CTATATAAATCATTTTAAGTTGA
** * * * * ** * * ** * ** * *
15173834 GCTTTGTTTTTATTTTTGGTTAAAACAGATAATAATTGGATGTTTGCCTTGGGAAACATGGAGCG
1 AATTT-CTTTCATTTTTGGTTAAAACAAATCATAATTTCATCTTTGCATAAGGAAACGTCAAACA
** * * * * * * *
15173899 AAAGCCATCCATTGACAATGAAAGTCCATTTATAGTCACTCATG-CGTCAAAAGACTAGTTACTT
65 AAAGCCATCCATTGACAACAAAAGTCCATTTACACTCACTCAAGCCTTC-AAAGCCTAGTCACTC
* * * * * * * *
15173963 GCTTTTAATGGTTTTATAATCTTATAAATGATT-T-AAGTTGAATTTTTTTTCATTTTTGGTTAA
129 ACTTTAAATGGTTTTACAATCTTATAAATGATTATAAAATTCAA-TTTTTCTCTTTTTTTGTTAA
* * * * * * * * *
15174026 AACAGA-CATAATTGGATGTTTGCATTG-GAAAACGTGAAGCAAAAGCTATTCATTCACAAGAAA
193 AACATATCGTAATTTGATGTTTACATTGAG-AAACATGAAGAAAAAGCCATCCATTGACAAGAAA
*
15174089 AGTCCATTTATAGTCACT
257 AGTCCACTTATAGTCACT
15174107 TATTCTTTGA
Statistics
Matches: 5583, Mismatches: 1144, Indels: 661
0.76 0.15 0.09
Matches are distributed among these distances:
326 4 0.00
327 59 0.01
328 68 0.01
329 282 0.05
330 129 0.02
331 7 0.00
332 1 0.00
333 1 0.00
335 2 0.00
336 264 0.05
337 32 0.01
338 428 0.08
339 620 0.11
340 957 0.17
341 1760 0.32
342 415 0.07
343 317 0.06
344 219 0.04
345 15 0.00
346 3 0.00
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.38
Consensus pattern (341 bp):
AATTTCTTTCATTTTTGGTTAAAACAAATCATAATTTCATCTTTGCATAAGGAAACGTCAAACAA
AAGCCATCCATTGACAACAAAAGTCCATTTACACTCACTCAAGCCTTCAAAGCCTAGTCACTCAC
TTTAAATGGTTTTACAATCTTATAAATGATTATAAAATTCAATTTTTCTCTTTTTTTGTTAAAAC
ATATCGTAATTTGATGTTTACATTGAGAAACATGAAGAAAAAGCCATCCATTGACAAGAAAAGTC
CACTTATAGTCACTCACGCATTCAAAAGCCTTATTACTCAGTTTAAGTGATCTTATAACTATATA
AATCATTTTAAGTTGA
Found at i:15176130 original size:13 final size:13
Alignment explanation
Indices: 15176112--15176136 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15176102 TTTCAGAAGA
15176112 TTTATAAAATCAT
1 TTTATAAAATCAT
15176125 TTTATAAAATCA
1 TTTATAAAATCA
15176137 CAATTTCTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTATAAAATCAT
Found at i:15179216 original size:371 final size:370
Alignment explanation
Indices: 15178533--15179273 Score: 1464
Period size: 371 Copynumber: 2.0 Consensus size: 370
15178523 ACTTGTGGGA
15178533 GAAAACATACTTTACAATTTATATCTCCCTCTATAAGCATCTCCAAAAATCCTCATGTCCTATGT
1 GAAAACATACTTTACAATTTATATCTCCCTCTATAAGCATCTCCAAAAATCCTCATGTCCTATGT
15178598 CCCACCTTAGGACAGTCTTCCCATTTGGTTCAATAGATCACAACTTCATCACACGCCTAATGATT
66 CCCACCTTAGGACAGTCTTCCCATTTGGTTCAATAGATCACAACTTCATCACACGCCTAATGATT
15178663 CATTATTTATAGTATCCCACTATTCTCATAGTCGTAACCAATTATATTTCTCATCTTAAAATTTT
131 CATTATTTATAGTATCCCACTATTCTCATAGTCGTAACCAATTATATTTCTCATCTTAAAATTTT
15178728 ACGGTATCATCTTCTAATTCCCTCCATACTCAAATTTATAATCCTTGACTTAACCCCGTTAACTA
196 ACGGTATCATCTTCTAATTCCCTCCATACTCAAATTTATAATCCTTGACTTAACCCCGTTAACTA
15178793 GTGACCAATTCATAGTACTGCAAGGTTTAATCGTTATGAAATCTAATAATTGTCGGAACCATTAA
261 GTGACCAATTCATAGTACTGCAAGGTTTAATCGTTATGAAATCTAATAATTGTCGGAACCATTAA
*
15178858 TGGCTTCCTATTTCAACCTTTAGTACTTATTTTAAATAATCGATC
326 TGGCTTCCTATTTCAACCTTTAGTACTTATTTAAAATAATCGATC
15178903 NGAAAACATACTTTACAATTTATATCTCCCTCTATAAGCATCTCCAAAAATCCTCATGTCCTATG
1 -GAAAACATACTTTACAATTTATATCTCCCTCTATAAGCATCTCCAAAAATCCTCATGTCCTATG
15178968 TCCCACCTTAGGACAGTCTTCCCATTTGGTTCAATAGATCACAACTTCATCACACGCCTAATGAT
65 TCCCACCTTAGGACAGTCTTCCCATTTGGTTCAATAGATCACAACTTCATCACACGCCTAATGAT
15179033 TCATTATTTATAGTATCCCACTATTCTCATAGTCGTAACCAATTATATTTCTCATCTTAAAATTT
130 TCATTATTTATAGTATCCCACTATTCTCATAGTCGTAACCAATTATATTTCTCATCTTAAAATTT
15179098 TACGGTATCATCTTCTAATTCCCTCCATACTCAAATTTATAATCCTTGACTTAACCCCGTTAACT
195 TACGGTATCATCTTCTAATTCCCTCCATACTCAAATTTATAATCCTTGACTTAACCCCGTTAACT
15179163 AGTGACCAATTCATAGTACTGCAAGGTTTAATCGTTATGAAATCTAATAATTGTCGGAACCATTA
260 AGTGACCAATTCATAGTACTGCAAGGTTTAATCGTTATGAAATCTAATAATTGTCGGAACCATTA
15179228 ATGGCTTCCTATTTCAACCTTTAGTACTTATTTAAAATAATCGATC
325 ATGGCTTCCTATTTCAACCTTTAGTACTTATTTAAAATAATCGATC
15179274 TTGCCACTAA
Statistics
Matches: 369, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
371 369 1.00
ACGTcount: A:0.31, C:0.24, G:0.09, T:0.36
Consensus pattern (370 bp):
GAAAACATACTTTACAATTTATATCTCCCTCTATAAGCATCTCCAAAAATCCTCATGTCCTATGT
CCCACCTTAGGACAGTCTTCCCATTTGGTTCAATAGATCACAACTTCATCACACGCCTAATGATT
CATTATTTATAGTATCCCACTATTCTCATAGTCGTAACCAATTATATTTCTCATCTTAAAATTTT
ACGGTATCATCTTCTAATTCCCTCCATACTCAAATTTATAATCCTTGACTTAACCCCGTTAACTA
GTGACCAATTCATAGTACTGCAAGGTTTAATCGTTATGAAATCTAATAATTGTCGGAACCATTAA
TGGCTTCCTATTTCAACCTTTAGTACTTATTTAAAATAATCGATC
Found at i:15179764 original size:15 final size:15
Alignment explanation
Indices: 15179744--15179785 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
15179734 TAAAACAACT
15179744 TTAAAACCAAAAACA
1 TTAAAACCAAAAACA
* *
15179759 TTAAAATCC-AAAGCT
1 TTAAAA-CCAAAAACA
15179774 TTAAAACCAAAA
1 TTAAAACCAAAA
15179786 TCTCTGATCT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 2 0.09
15 19 0.83
16 2 0.09
ACGTcount: A:0.60, C:0.19, G:0.02, T:0.19
Consensus pattern (15 bp):
TTAAAACCAAAAACA
Found at i:15180198 original size:17 final size:18
Alignment explanation
Indices: 15180168--15180201 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
15180158 AAATTTGACC
*
15180168 ATTTCAATATAATAAAAA
1 ATTTCAATAAAATAAAAA
15180186 ATTT-AATAAAATAAAA
1 ATTTCAATAAAATAAAA
15180202 TACTTTCTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (18 bp):
ATTTCAATAAAATAAAAA
Found at i:15182424 original size:19 final size:19
Alignment explanation
Indices: 15182400--15182437 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
15182390 ACTTCTAAAC
15182400 CTCAAATCATACTCCAATA
1 CTCAAATCATACTCCAATA
*
15182419 CTCAAATTATACTCCAATA
1 CTCAAATCATACTCCAATA
15182438 AGTCAAATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.29, G:0.00, T:0.29
Consensus pattern (19 bp):
CTCAAATCATACTCCAATA
Found at i:15186437 original size:35 final size:35
Alignment explanation
Indices: 15186400--15186572 Score: 174
Period size: 35 Copynumber: 4.9 Consensus size: 35
15186390 GATAACGATG
*
15186400 TTGAAGTGTGCGAGTAGGGAGTGCACACGATGATG
1 TTGAAGTGTGCGAGTAGGGAGTGCACACGATGATA
*
15186435 TTGAAGTGTGCGAGTAAGGAGTGCACACGATGATA
1 TTGAAGTGTGCGAGTAGGGAGTGCACACGATGATA
* *
15186470 TTGAGGTATGTC-AGTAGGGAGTGCACACGATGATA
1 TTGAAGTGTG-CGAGTAGGGAGTGCACACGATGATA
* * ** * *
15186505 TAGAAATACGTGAGTAGGGAGTGCACATGATGAT-
1 TTGAAGTGTGCGAGTAGGGAGTGCACACGATGATA
*
15186539 TT-ATAGTGTGCACGATGT-GGGGGTGCACACGATG
1 TTGA-AGTGTG--CGA-GTAGGGAGTGCACACGATG
15186573 GCTCCAGCTA
Statistics
Matches: 114, Mismatches: 18, Indels: 11
0.80 0.13 0.08
Matches are distributed among these distances:
33 1 0.01
34 4 0.04
35 90 0.79
36 17 0.15
37 2 0.02
ACGTcount: A:0.28, C:0.12, G:0.36, T:0.24
Consensus pattern (35 bp):
TTGAAGTGTGCGAGTAGGGAGTGCACACGATGATA
Found at i:15186645 original size:2 final size:2
Alignment explanation
Indices: 15186638--15186685 Score: 82
Period size: 2 Copynumber: 25.0 Consensus size: 2
15186628 GTATTCGTGT
15186638 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA TA TA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15186678 TA TA TA TA
1 TA TA TA TA
15186686 CGTACGCGTA
Statistics
Matches: 44, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
1 2 0.05
2 42 0.95
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:15191699 original size:2 final size:2
Alignment explanation
Indices: 15191692--15191730 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
15191682 TTTGATTATG
15191692 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15191731 GTAAGTAATT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:15191816 original size:2 final size:2
Alignment explanation
Indices: 15191779--15191806 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
15191769 NNNNNNNNTG
15191779 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15191807 AGCTATATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:15220049 original size:171 final size:171
Alignment explanation
Indices: 15219155--15227454 Score: 8305
Period size: 171 Copynumber: 48.6 Consensus size: 171
15219145 GGGTCATTAC
*
15219155 AAATGATTTTAAGTTGAACTTTTTTTTTTCATTTTTAGTTAAAACAGATCATAACTT-GATGTTT
1 AAATGATTTTAAGTTGAA---TTTTTTTTCATTTTTGGTTAAAACAGATCATAA-TTGGATGTTT
* * * * * **
15219219 GCCTCAAGAAATGGGAAGTGAATAG-CATCCATTGACAAGAAAGGTCCATTTATAGTCGTTCATG
62 GCCTCGAGAAACGTGAAGCGAA-AGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * ***
15219283 CCTTTGAAAGACTTGTTACTTTGTTTAAATGGTTTTATAATCTTAT
126 CCTTCGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTAT
* *
15219329 AAATGAGTTTAAGTTGAA--TTTTTTCATTTTTGGTTAAAACAGATCCTAATTGGATGTTTGCCT
1 AAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCT
* * * * * * * * *
15219392 CAAGAAACGTTAAGCGATAGCCATCCATTAATAGGAAAGGTCCATTTATAGTCAGTCATGCCTTT
66 CGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* * * * *
15219457 GAAAGACTTGTTACTCGCTTTCAAGGGTTTGATAATCTTAT
131 GAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTAT
*** * * *
15219498 AAATGATTTTAAGTTG-A-TTTTTTTCATTTTCAATGATAACATATCATAATTGGATAG-TTGCC
1 AAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGAT-GTTTGCC
* * * ** * * * * * * *
15219560 TTGGGAAGCAAGAAACGAAAGTCATCAATTGAAAAGAAAAGTCCATTTATAGTTATTCATACCTT
65 TCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTT
** * * * *
15219625 CGAAACCCTAGTTACTCAGTTTAAATAGTTTAATAATCTTTT
130 CGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTAT
* * * * *
15219667 AAATGATTTTAATTTG-ATTTTTTTTCATTTCTAGCTAAAACAAATCATAATTGGATGTTTGCCT
1 AAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCT
* * * * * * *
15219731 CAAGAAATGAGAAGCGAAAGCCATCCATTGATAAG-AAAGTCCATTTACAGTCAAT-AGTACCTT
66 CGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCA-TGCCTT
* * * *
15219794 CGAAACACTTGTTCCT-AGCTTTAAATAGTTTTATAATCTTAT
130 CGAAAGACTAGTTACTCA-CTTTAAATGGTTTTATAATCTTAT
* * * * * *
15219836 AACTAATTTTTAAGTTGAATTTTATTTCGTTTTTGGTTAAAACAAATCATAATTGGATGTTTACC
1 AAATGA-TTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCC
* * * * * ** * *
15219901 TTGAGAAACGTAAAACAAAAGCCATCTATCAACAAGGAAAGTCCATTTGTAGTCACTCATGCCTT
65 TCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTT
* * *
15219966 CAAAAGACTAGTTGCTCACTTTAAATGGTTTTATAATCTTGT
130 CGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTAT
* * ** * *
15220008 AAATGATTTCAAGTTAAATTTTTTTTTCA-TTTTCATTAAAACTGATCATAATTGGATGCTTGCC
1 AAATGATTTTAAGTTGAA-TTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCC
* *
15220072 TCGAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAGGTCCATTTATAGTCACTCATGCCTT
65 TCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTT
* * * * *
15220137 TGAAAGCCTAATTACTCGCTTTAAATGGTTTTATAATCTAAT
130 CGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTAT
*
15220179 AAATGATTTTAAGTTGAACTTTTTTTTTCATTTTTGGCTAAAACAGATCATAATTGGATGTTTGC
1 AAATGATTTTAAGTTGAA--TTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGC
* * ** * * * * *
15220244 CTCAAGAAACGAGAAGAAAAAGCCATCCATTGATAAGAAAAGTCCATTTACAATCAATAATGCCT
64 CTCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCT
* ** * * *
15220309 TCAAAACCCTTGTTACTCACTTTAAATGGCTTTATAATCTTGT
129 TCGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTAT
* * * *
15220352 AAATGATTTTAAGTTGAATTTTTTTCTCATTTTTGATTAAAAAATATCATAATTGGATATTTGCC
1 AAATGATTTTAAGTTGAATTTTTTT-TCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCC
* * * * * * * *
15220417 TCTAGAAACATGAAGTGAAAGCCATCCATTAATAAGCAAATTCCATTTATAGTCACCCATGCCTT
65 TCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTT
* *
15220482 CGAAAGACTAGTTACTCACTTTCAATAGTTTTATAATCTTAT
130 CGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTAT
* * * *
15220524 AAATGATTTTAAGTGGAATTTGTTTTCATTTTTGGTTAAAACATATCATAATTGGATTTTTGCCT
1 AAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCT
* * * * * * * *** *
15220589 TGGGTAACGTGAAGTGAAAGCCATCCACTGGCAAGAAAAATCCATTTATAGTCAGGAATACCTTC
66 CGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* * *
15220654 AAAAGACTAGTTACTCACGTTAAAGGGTTTTATAATCTTAT
131 GAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTAT
* *
15220695 AAATGATTTTAAGTTGAA-TTTTTTTCATTTTTGGTTAAAACAAATCATAATTAGAAT-TTTGCC
1 AAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATT-GGATGTTTGCC
* * * * * *
15220758 TCG-GGAATGTGAAGCGATAGGCATCCATTGATAAGAAAAGTACATTTATAGTCACTCATGCCTT
65 TCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTT
* * * * *
15220822 TGAAAGACTTGTTACTCGCTTCAAATGGTTTTATAATCTTGT
130 CGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTAT
* *
15220864 AAATGATTTTAAGTTGTATTTCTTTTCATTTTTGGTT-AAACAGATCATAATTGGATGTTTGCCT
1 AAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCT
* ** * * * * * *
15220928 TGAGAAACGTGAAATGAAAGCCATCCATTGATAAGGAAGGTGCATTTATATTCACTCATGCCTTT
66 CGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* * * *
15220993 GAATGAATAGTTACTCGCTTTAAATGGTTTTATAATCTTGT
131 GAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTAT
* * * ** * *
15221034 AAATGATTTTAAGTTGAATTTGTTTTCATTTCTGG-AAAAATTTGATCGTAATTGGATATTTGCC
1 AAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAA-CAGATCATAATTGGATGTTTGCC
* * * *
15221098 TTGAGAAATGTGAAGCGAAAGCTATCCATTGACAAGAAAGGTCCATTTATAGTCACTCATGCCTT
65 TCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTT
* * **
15221163 CGAAAGCCTAATTACTCGGTTTAAATGGTTTTATAATCTTAT
130 CGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTAT
* * *
15221205 AAATGATTTTAAGTTGAACTTTTTTTTCATTTTTAGCTAAAACAGATCATAATTGGATGTTTGTC
1 AAATGATTTTAAGTTGAA-TTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCC
* * * * * * * **
15221270 TCAAGAAATGTGAAGCGAAAGGCATCCATTTATAAGAAAGGTCTATTTATAGTTGCTCATGCCTT
65 TCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTT
* * * * *
15221335 CGAAATACTTGTAACTCGCTTTAAATGGTTTTA-AATCTTGT
130 CGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTAT
* * * * * * *
15221376 ACATAATTTTAAGTTGAATTTTGTTTCATTTTT-ATTAAAACAAATCATAATTGAATGTTTGGCT
1 AAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCT
* * * * * *
15221440 CGGGAAATGTTAAGCGAAAGCCATCCATTGAGAA-AGAAAGTCCATTTATAGTCATTCATGCCCT
66 CGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGA-AAAGTCCATTTATAGTCACTCATGCCTT
* * * * *
15221504 CAAAAGACTAGTTACAT-GCTATCAATGGTTTTATAATCTTTT
130 CGAAAGACTAGTTAC-TCACTTTAAATGGTTTTATAATCTTAT
* *
15221546 AAATGATTTTAAGTTG-ATTTTGTTTTCATTTTTGGTTAAAACAAATCATAATTGGATGTTTGTC
1 AAATGATTTTAAGTTGAATTTT-TTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCC
** * * * * *
15221610 TTAAGAAACATGAATCGAAAGCCATCCATTGATAAGAAAAGTCCATATATATTCACTCATGCCTT
65 TCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTT
* * *
15221675 CGAAAGAATAGTTACTCGCTTTAAATGGTTTTATAATCTTGT
130 CGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTAT
*
15221717 AAATGATTTTAAGTTGAA-TTTTTTTCATTTTTGGTTAAAACCGATCATAATTGGATGTTTGCCT
1 AAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCT
* * * * *
15221781 TGAGAAACATGAAGCGAAAGTCATCCATTGACAAGAAAGGTCCA-TTATAGTCACTCATGCCTTT
66 CGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* * *
15221845 GAAAGCCTAATTACTCACTTTAAATGGTTTTATAATCCTAT
131 GAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTAT
*
15221886 AAATGATTTTAAGTTGAACTTTTATTTT-ATTTTATTTTGGCTT-AAACTGATCATAATTGGATG
1 AAATGATTTTAAGTTGAA-TTTT-TTTTCA---T-TTTTGG-TTAAAACAGATCATAATTGGATG
* * * * * * * * *
15221949 TTTGCCTCAAGAAACGAGAAGAGAAAGCCATCCATTGACAAGAAAAGTCTATTTACAATTAGTAA
59 TTTGCCTCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCA
** * ** * *
15222014 TGCCTTCGAAACCCTTGTTACTTGCTTTAAATGGCTTTATAATCTTGT
124 TGCCTTCGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTAT
* * * *
15222062 AAATGATTTTAAGTTGCATTTGTTTCTCATTTTTGGTTAAAACATATCATAATTGGATATTTGCC
1 AAATGATTTTAAGTTGAATTT-TTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCC
* * * * * * *
15222127 TTGAGAAACATGAAGC-AAATGCCATCCATTGATAAGAAAAGTTCATTTGTAGTCACCCATGGCT
65 TCGAGAAACGTGAAGCGAAA-GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCT
* * *
15222191 TCGAAAGGCTAGTTACGCACTTTCAATGGTTTTATAATCTTAT
129 TCGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTAT
* * * *
15222234 AAATGATTTTAAGTGGAA-TTGTTTTCATTTTTGGTTAAAACATATCATAATTGGATTTTTGCCT
1 AAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCT
* * * * * *** *
15222298 TGGGTATCGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTAGAGTCAGGAATACCTTC
66 CGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* * *
15222363 GAAAGACTAGTAACTCACTTTAAAGGGTTTTATAATCATAT
131 GAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTAT
* *
15222404 AAATGATTTTAAGTTGAA-TTTTTTTCATTTTTGATTAAAACAGATTATAA-TGAGTAT-TTTGC
1 AAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTG-G-ATGTTTGC
* *
15222466 CTCGAG-AACGTGAAGCGATAGGCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCT
64 CTCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCT
* * * * *
15222530 TAGACAA-ACTTGTTACTCGCTTTAAATGGGTTTATAATCTTGT
129 TCGA-AAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTAT
* * * *
15222573 AAATGATTTTAAGTTGTATTTCTTTTCATTTTTGCTTAAAATAGATCATAATTGGATGTTTGCCT
1 AAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCT
* * * * * *
15222638 CGAAAAACGTGAAACAAAAGCCATCCATTGAGAAGAAAAGTCTATTTATAGTCGCTCAT-CCTTC
66 CGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* * * * *
15222702 AAAAGACTAATTACTCGCTTTTAATGCTTTTATAATCTTAT
131 GAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTAT
* * **
15222743 AAATGATTTTAAGTTG-ATTGTTTTTTCATATTTAGTTAAAACATTTCATAATTGGATGTTTGCC
1 AAATGATTTTAAGTTGAATT-TTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCC
* * * * ** * * *
15222807 TTGGGAAGCATGCAA-C-ATAAATCATCAATTGACAAGAAAAGTCCATTTATAGTCATTTATGCC
65 TCGAGAAACGTG-AAGCGA-AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC
* ** * * * *
15222870 TTTGAAATCCTAATTTCTCTA-TTTGAATGGTTTTATAATCTTTT
128 TTCGAAAGACTAGTTACTC-ACTTTAAATGGTTTTATAATCTTAT
** * * *
15222914 AAATGATTTTATCTTGAATTGTTTTTCATTTTTGGCTAAAACAGATCTTAATTGGATGTTTGCCT
1 AAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCT
* * * * * * * *
15222979 TGGGAAATGAGAAGCGAAAGCCATCCATTGATAAGAAAAGTCCATTTACAGTCAGTAATGCCTTC
66 CGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* * * * *
15223044 CAAACAATTGTTACTCACTTTAAATGGTTTTATAATCTTGT
131 GAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTAT
* * * * * *
15223085 AATTAATTTTAAGTTGAATTCTTTTTCATTTTTAGTTAAAACATATCATAATTGGATGCTTGCCT
1 AAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCT
* * * * *
15223150 CGAGAAACATG-AGTGAAACCCATCCATTGACAAGAAAAGTTCATTTATATTCACTCATGCCTTC
66 CGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
*
15223214 GAAAGAATAGTTACT-AGCTTTAAATGGTTTTATAATCTTAT
131 GAAAGACTAGTTACTCA-CTTTAAATGGTTTTATAATCTTAT
* ** *
15223255 AAATGATTTTAAGTT-TATTTTTTTCTCATTTTTGGTTAAAGTAGATCTTAATTGGATGTTTGCC
1 AAATGATTTTAAGTTGAATTTTTTT-TCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCC
* * * * * *
15223319 TCGAGAAATGTAAAACGAAAGCCATCCATTGACAAG-AAAGATTCATTTGTATTCACTCATGCCT
65 TCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAG-TCCATTTATAGTCACTCATGCCT
** * ** *
15223383 TTTAAAGAATAGTTACTTGCTTTAAATGGTTTTATAATCTTGT
129 TCGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTAT
* **
15223426 AAATAATTTTAAGTTGAATTTTTTTTCATTTTTGG-TAAAGATC-GATTGTAATTGGATGTTTGC
1 AAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAA-A-CAGATCATAATTGGATGTTTGC
* * * * *
15223489 CTCGAGAAATGTGAAGCAAAAGCCATCCATTGACAAGAAAGGTCCATTTATAGTCACTCATACTT
64 CTCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCT
* * * ** * *
15223554 TTGAAAGCCTAATTACTCGTTTTAAATAGTTTTATAATTTTAT
129 TCGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTAT
* * * * *
15223597 AAATGATTTTAAGTTAAACTTTTTTTTTTATTTTTGGCTAAAGC-GTATCATAATTTGATGTTTG
1 AAATGATTTTAAGTTGAA--TTTTTTTTCATTTTTGGTTAAAACAG-ATCATAATTGGATGTTTG
* ** ** * * * * * *
15223661 CCTCAAGAAACAAGAAAAGAAAGTCATCCATTGACAAGAAAAGTCCATTTACATTCAGTAATGCT
63 CCTCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC
** * * *
15223726 TTCGAAACCCTTGTTACTCACTTTCAATGGTTTTATAATCTTGT
128 TTCGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTAT
* * * * * *
15223770 AAAATTATTTTAAGTTGAATTTTTTTTCTCATTTTTTGTTAAAACATATCATAATTAGATATTTT
1 -AAATGATTTTAAGTTGAA-TTTTTTT-TCATTTTTGGTTAAAACAGATCATAATTGGATGTTTG
* * * * * * *
15223835 CCTTGAGAAACATGAAGTGGAAGCGATCCATTGATAAGAAAAGTCCATTTATAGTCACCCATGCC
63 CCTCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC
* *
15223900 TTTGAAAGACTAGTTACTCACTCTT-AATGG-TTTATAATCTCAT
128 TTCGAAAGACTAGTTACTCACT-TTAAATGGTTTTATAATCTTAT
* *
15223943 AAATGATTTTAAGTTGAGTTTTTGTTTTCCATTTTTGGTTAAAACAGATCATAATTGGATGTTTA
1 AAATGATTTTAAGTTGA-ATTTT-TTTT-CATTTTTGGTTAAAACAGATCATAATTGGATGTTTG
* * * * * * * * ***
15224008 CCTTGGGTAACATGAAGAGAAAGCCATCCACTAACAAGAAAAGTCCATTTATTGTCAGGAATGCC
63 CCTCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC
* *
15224073 TTCGAAAAACTAGTTACTCA-TGTTAAA-GAATTTTATAATCTTAT
128 TTCGAAAGACTAGTTACTCACT-TTAAATG-GTTTTATAATCTTAT
* * *
15224117 AAAGGATTTTAAGTTGAATTTTTTTTTCATTTTTGGTTAAAACATATCATAATTAGAAT-TTTGC
1 AAATGATTTTAAGTTGAA-TTTTTTTTCATTTTTGGTTAAAACAGATCATAATT-GGATGTTTGC
* * * * * * *
15224181 CTCAAG-AACATGAAGCGATAGACATCCAATT-ATAAGAAAAGACCATTTATAGTCATTCATGCC
64 CTCGAGAAACGTGAAGCGAAAGCCATCC-ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC
* * ** * *
15224244 TTTGAAAGACTTGTTACTTGCTTTAAATGGTTTTATAAACTTGT
128 TTCGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTAT
* * *
15224288 AAATGATTTTAAGTT-AA---ATTTT--TTTTTCGTTAAAATAGATCATAATTGGATGTTTGCCT
1 AAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCT
* * * ** *
15224347 CAAGAAATGTGAAACGAAAGCCATCCATTGGGAAGAAAAGTCCACTTATAGTCACTCATGCCTTC
66 CGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* * * * *
15224412 AAAAGACTAGTAACT-ACTTTCAATGGTTATGTAAT-TCTAT
131 GAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCT-TAT
* * * * * * *
15224452 GAAGGATTTTAAGTTGAGA--CTTTTTCATTTTTAGTTAAAACATACCATAAGTGGATGTTTGCC
1 AAATGATTTTAAGTTGA-ATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCC
* * * * * * *
15224515 TTGAGAAATGTGCAA-CGTAAA-TCATCAATTGGCAAGAAAAGTCCGTTTATAGTCATTCATGCC
65 TCGAGAAACGTG-AAGCG-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC
* ** * *
15224578 TTTGAAATCCTAGTTTCTC-CGTTTAAATGGTTTTATAATCTTTT
128 TTCGAAAGACTAGTTACTCAC-TTTAAATGGTTTTATAATCTTAT
* * * * * * *
15224622 AAATGATTTTAAGTTGAATTCTTTTTCATTTTTGGCTAAAATATATCACATTTGGATGTTTACCT
1 AAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCT
* * *** * * *
15224687 TGGGAAATAAGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTACAGTCAATAATGCCTTC
66 CGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* * * * *
15224752 CAAACACTTGTTACTCACTTTAAATGGTTTTATAATCATGT
131 GAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTAT
* * * * * *
15224793 AATTGATTTTAAGTTGATTTTTTTTTCATTTTTAGTTAAAACATATCACAATTGGATGTTTTCCT
1 AAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCT
* * * * * * * * *
15224858 TGAGAAACGTGAAGCAAAAGCTATCTATTGATAAGAAAAGTCCATTTATATTTACTTATGCCCTC
66 CGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* * * * * ** *
15224923 AAAAGAATAATTACTCGCATTAAATACTTTTATAATCTTGT
131 GAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTAT
* * *
15224964 AAATGATTTTCAGTTGAATTTTTTTTTCATTTTTGGATAAAACAGATCATAATTGGATGTTT-CA
1 AAATGATTTTAAGTTGAA-TTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCC
* * *
15225028 TCGAGAAACGTGAAGCGAAAGCCATTCATTGACAAGAAAGGTCCATTTACAGTCACTCATGCCTT
65 TCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTT
* * * * * * *
15225093 AGAAAGCCTAATTATTCGCTTTAAATAGTTTTATAATCTTGT
130 CGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTAT
* * * * *
15225135 AAATGATTTTAAGTTGAATTTTTTTCTCATTTCTGGTTAAAATATATCATAATTGGATATTTACC
1 AAATGATTTTAAGTTGAATTTTTTT-TCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCC
* * * * * *
15225200 TCGAGAAACGTGAAGCAAAAGCCAACCATTAACAAAAAAAATCCATTTATAGTCACCCATGCCTT
65 TCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTT
* *
15225265 CGAAAGACTAGTTACTCACTTTCAATGGTTTTATAATATTAT
130 CGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTAT
* * *
15225307 AAATGATTTTGAGTTGAA---TATTT--TTTTTGGTTAAAACAGATCATAGTTGGATGTTTGCCT
1 AAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCT
* * * * * * * ***
15225367 TGGGTAACGTGAAGCGGAAGCCATCCACTGATAAGAAAAGTCCATTTATAGTTAGGAATGCCTTC
66 CGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* * * *
15225432 GAAAGACTAGTTACTCACGTTAAAGGGTTTCATAATCTTGT
131 GAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTAT
* * * *
15225473 AAATGATTTGAAGTTGAATTTTTTTTCATTTTTGGTTAAAATAGAACATAATTAGAAT-TTTGCC
1 AAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATT-GGATGTTTGCC
* * * ** *
15225537 TCG-GGAACGTGAAGCGATAGGCAGGCATTGACAAGAAAAGTCCATGTATAGTCACTCATGCCTT
65 TCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTT
* * * * *
15225601 CAAAAGACTTTGTTACTCGCTTTAAATTGTTTTATAATCTTGT
130 CGAAAGAC-TAGTTACTCACTTTAAATGGTTTTATAATCTTAT
* * * *
15225644 CAATGATTTTAAGTTGAATTTTTTTTCA-TTTTGGTTAAAACATATC-TAATTGAATGTTTACCT
1 AAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCT
* ** * * *
15225707 CGAGAAATGTGAAATGAAGGCCATCGATTGAGAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
66 CGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* * * *
15225772 AAAAGACTAGTTACTTACTTTTAATGGTTTTATAATCTTGT
131 GAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTAT
* * * * * * * * *
15225813 AAAGGATTTTATGTTGATTTTTTTTTCATTCTTAGTTAAAACATATCATAAATGGATTTTTGGCT
1 AAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCT
* * ** * * * *
15225878 TGGGAAGTGTGCAA-CGTAAA-TCATCAATTGACAAGAAAAGTTCATTTATAGTCATTCATGCCT
66 CGAGAAACGTG-AAGCG-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCT
** * * * * *
15225941 TCGAAATCCTAGTTTCT-AGTTTAAATGGTTCTATAATATTTT
129 TCGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTAT
* * * ** * *
15225983 AAATGATTTTAAGTT-ACATATTTTTTCATTTTTTGCTAAAACAGATCACGATTAGATGTTTACC
1 AAATGATTTTAAGTTGA-ATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCC
* * * * * * * *
15226047 T-TAGGAAATGAGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTACAATCAGTAATGCCT
65 TCGA-GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC-
* * * *
15226111 TTC--AAGCATTTGTTACTCACTTTAAATGATTTTATAGTCTTAT
128 TTCGAAAG-ACTAGTTACTCACTTTAAATGGTTTTATAATCTTAT
* * * *
15226154 AATTAATTTTAAGTTGAA-TTTTTTTCTTTTTTGGTTAAAACATATCATAATTGGATGTTTGCCT
1 AAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCT
* * * * * * * *
15226218 C-AAAAAGGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCGATTTATATTTACTTATTCCTTT
66 CGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* * **
15226282 GAAAGAATAGTTACTCGCTTTAAATGGTTTTATAATCTCGT
131 GAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTAT
* * * * *
15226323 AAATGATTTTAAGTTGAATTTTTTTCTCATTTTTGGTTAAAAAATATCAAAATTGGATATTTACC
1 AAATGATTTTAAGTTGAATTTTTTT-TCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCC
* *
15226388 TTGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCAC-CTATGCCC
65 TCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTC-ATGCCT
* *
15226452 TCGAAAGACTAGTCACTCACTTTCAATGGTTTTATAATCTTAT
129 TCGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTAT
* * ** *
15226495 AAATGATTTTAAGTAGAATTTGTTTTTCGTTTTCAGCTAAAACAGATCATAATTGGATGTTTGCC
1 AAATGATTTTAAGTTGAATTT-TTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCC
* * * * * *
15226560 TCAAGAAACGTGAAGCGAAAGGCATCCATTGATAGGAAAGGTCCATTTATAATCACTCATGCCTT
65 TCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTT
* *
15226625 CGAAAGCCTTA-TTACTCACTTTAAATGATTTTATAATCTTAT
130 CGAAAGAC-TAGTTACTCACTTTAAATGGTTTTATAATCTTAT
* * *
15226667 AAATGATTTTAAGTTGAACTTTTTTTTTCATTTTTGGCTAAAACAAATCATAATTGGATGTTTGT
1 AAATGATTTTAAGTTGAA--TTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGC
* * * * * *
15226732 CT-TAGGAAATGAGAAGCAAAAGCCATCCATTGACAAGAAAGGTCTATTTATAGTCACTCATGCC
64 CTCGA-GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC
** *
15226796 TTCGAAAGACTAAG-TACTCACTTTAAATACTTTCATAATCTTAT
128 TTCGAAAGACT-AGTTACTCACTTTAAATGGTTTTATAATCTTAT
** * * * * *
15226840 AAATGATTTTAAGTTGAATTTTTTCCCATTTTTGGTTAAAACATATCATACTTGGA-ATTTACAT
1 AAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCT
* * * * * * *
15226904 CAAGAAACATGAAGCGAAAGTCATCCATTGATAAAAAAATTCCATTTATAGACACTCATGCCTTC
66 CGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* * * *
15226969 GAAAGACTAGTTACACGCTTTAAATGGTTTGATCATCTTAT
131 GAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTAT
* * * * * * *
15227010 AAATGATTTTAACTTG-ATTTTGTTTTCATTTTTTGCTAATATAGATCATAAATCGATGTTTGCC
1 AAATGATTTTAAGTTGAATTTT-TTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCC
* * * * * *
15227074 TCGAGAAACGTGAAGCAAAAGCCATTCATTAAGAA-ATAAAGTCCATTTATAGTCATTCATGCCC
65 TCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGA-AAAGTCCATTTATAGTCACTCATGCCT
* * *
15227138 TCAAAAGACTAGTTA-T-ACGTTTTCAATAGTTTTATAATCTTAT
129 TCGAAAGACTAGTTACTCAC--TTTAAATGGTTTTATAATCTTAT
* * *
15227181 GAAA-GATTTTATGTT-AATTTTGTTTTCATTTTTGATTAAAACAGATCATAATTGGATGTTTGT
1 -AAATGATTTTAAGTTGAATTTT-TTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGC
* * * * * *
15227244 CTTGAGAAACGTGAAGCAAAAGCCATCCATTGAAAAGAAAAATCTA-TTATATTCACTCATGCCT
64 CTCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCT
* * * * *
15227308 TCAAAAGAGTAGTTACTCGCTTTAAATGGTTTTATAATCATGT
129 TCGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTAT
* * * * * * *
15227351 AAATGATTTTAAGTTCAATTTTTTTCTCCTTTTTAGTTAAAACATATCATACTTGGATATTTACC
1 AAATGATTTTAAGTTGAATTTTTTT-TCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCC
15227416 TCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAA
65 TCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAA
15227455 TGTCACGACC
Statistics
Matches: 6717, Mismatches: 1244, Indels: 333
0.81 0.15 0.04
Matches are distributed among these distances:
163 4 0.00
164 66 0.01
165 58 0.01
166 137 0.02
167 4 0.00
168 18 0.00
169 1025 0.15
170 1420 0.21
171 2170 0.32
172 952 0.14
173 545 0.08
174 174 0.03
175 76 0.01
176 68 0.01
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.38
Consensus pattern (171 bp):
AAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCT
CGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
GAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTAT
Found at i:15221449 original size:341 final size:341
Alignment explanation
Indices: 15219155--15227454 Score: 8288
Period size: 341 Copynumber: 24.3 Consensus size: 341
15219145 GGGTCATTAC
*
15219155 AAATGATTTTAAGTTGAACTTTTTTTTTTCATTTTTAGTTAAAACAGATCATAACTT-GATGTTT
1 AAATGATTTTAAGTTGAA---TTTTTTTTCATTTTTGGTTAAAACAGATCATAA-TTGGATGTTT
* * * * * **
15219219 GCCTCAAGAAATGGGAAGTGAATAG-CATCCATTGACAAGAAAGGTCCATTTATAGTCGTTCATG
62 GCCTCGAGAAACGTGAAGCGAA-AGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * *** * *
15219283 CCTTTGAAAGACTTGTTACTTTGTTTAAATGGTTTTATAATCTTATAAATGAGTTTAAGTTGAA-
126 CCTTCGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTGTAAATGATTTTAAGTTGAAT
* * * * * *
15219347 -TTTTTTCATTTTTGGTTAAAACAGATCCTAATTGGATGTTTGCCTCAAGAAACGTTAAGCGATA
191 TTTTTTTCATTTTT-ATTAAAACATATCATAATTGGATGTTTGCCTCGAGAAACGTGAAGCGAAA
* * * * * * *
15219411 GCCATCCATTAATAGGAAAGGTCCATTTATAGTCAGTCATGCCTTTGAAAGACTTGTTACTCGCT
255 GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCGCT
* * *
15219476 TTCAAGGGTTTGATAATCTTAT
320 TTAAATGGTTTTATAATCTTAT
*** * * *
15219498 AAATGATTTTAAGTTG-A-TTTTTTTCATTTTCAATGATAACATATCATAATTGGATAG-TTGCC
1 AAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGAT-GTTTGCC
* * * ** * * * * * * *
15219560 TTGGGAAGCAAGAAACGAAAGTCATCAATTGAAAAGAAAAGTCCATTTATAGTTATTCATACCTT
65 TCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTT
** * * * * *
15219625 CGAAACCCTAGTTACTCAGTTTAAATAGTTTAATAATCTTTTAAATGATTTTAATTTG-ATTTTT
130 CGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTGTAAATGATTTTAAGTTGAATTTTT
* * * * * *
15219689 TTTCATTTCTAGCTAAAACAAATCATAATTGGATGTTTGCCTCAAGAAATGAGAAGCGAAAGCCA
195 TTTCATTTTTA-TTAAAACATATCATAATTGGATGTTTGCCTCGAGAAACGTGAAGCGAAAGCCA
* * * * * * * *
15219754 TCCATTGATAAG-AAAGTCCATTTACAGTCAAT-AGTACCTTCGAAACACTTGTTCCTAGCTTTA
259 TCCATTGACAAGAAAAGTCCATTTATAGTCACTCA-TGCCTTCGAAAGACTAGTTACTCGCTTTA
*
15219817 AATAGTTTTATAATCTTAT
323 AATGGTTTTATAATCTTAT
* * * * * *
15219836 AACTAATTTTTAAGTTGAATTTTATTTCGTTTTTGGTTAAAACAAATCATAATTGGATGTTTACC
1 AAATGA-TTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCC
* * * * * ** * *
15219901 TTGAGAAACGTAAAACAAAAGCCATCTATCAACAAGGAAAGTCCATTTGTAGTCACTCATGCCTT
65 TCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTT
* * * *
15219966 CAAAAGACTAGTTGCTCACTTTAAATGGTTTTATAATCTTGTAAATGATTTCAAGTTAAATTTTT
130 CGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTGTAAATGATTTTAAGTTGAA-TTTT
* * *
15220031 TTTTCATTTTCATTAAAAC-TGATCATAATTGGATGCTTGCCTCGAGAAACGTGAAGCAAAAGCC
194 TTTTCATTTTTATTAAAACAT-ATCATAATTGGATGTTTGCCTCGAGAAACGTGAAGCGAAAGCC
* * * *
15220095 ATCCATTGACAAGAAAGGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTAATTACTCGCTTTA
258 ATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCGCTTTA
*
15220160 AATGGTTTTATAATCTAAT
323 AATGGTTTTATAATCTTAT
*
15220179 AAATGATTTTAAGTTGAACTTTTTTTTTCATTTTTGGCTAAAACAGATCATAATTGGATGTTTGC
1 AAATGATTTTAAGTTGAA--TTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGC
* * ** * * * * *
15220244 CTCAAGAAACGAGAAGAAAAAGCCATCCATTGATAAGAAAAGTCCATTTACAATCAATAATGCCT
64 CTCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCT
* ** * *
15220309 TCAAAACCCTTGTTACTCACTTTAAATGGCTTTATAATCTTGTAAATGATTTTAAGTTGAATTTT
129 TCGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTGTAAATGATTTTAAGTTGAATTTT
* * * * *
15220374 TTTCTCATTTTTGATTAAAAAATATCATAATTGGATATTTGCCTCTAGAAACATGAAGTGAAAGC
194 TTT-TCATTTTT-ATTAAAACATATCATAATTGGATGTTTGCCTCGAGAAACGTGAAGCGAAAGC
* * * * * *
15220439 CATCCATTAATAAGCAAATTCCATTTATAGTCACCCATGCCTTCGAAAGACTAGTTACTCACTTT
257 CATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCGCTTT
* *
15220504 CAATAGTTTTATAATCTTAT
322 AAATGGTTTTATAATCTTAT
* * * *
15220524 AAATGATTTTAAGTGGAATTTGTTTTCATTTTTGGTTAAAACATATCATAATTGGATTTTTGCCT
1 AAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCT
* * * * * * * *** *
15220589 TGGGTAACGTGAAGTGAAAGCCATCCACTGGCAAGAAAAATCCATTTATAGTCAGGAATACCTTC
66 CGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* * * *
15220654 AAAAGACTAGTTACTCACGTTAAAGGGTTTTATAATCTTATAAATGATTTTAAGTTGAA-TTTTT
131 GAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTGTAAATGATTTTAAGTTGAATTTTTT
* * * * * * *
15220718 TTCATTTTTGGTTAAAACAAATCATAATTAGAAT-TTTGCCTCG-GGAATGTGAAGCGATAGGCA
196 TTCATTTTT-ATTAAAACATATCATAATT-GGATGTTTGCCTCGAGAAACGTGAAGCGAAAGCCA
* * * * *
15220781 TCCATTGATAAGAAAAGTACATTTATAGTCACTCATGCCTTTGAAAGACTTGTTACTCGCTTCAA
259 TCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCGCTTTAA
*
15220846 ATGGTTTTATAATCTTGT
324 ATGGTTTTATAATCTTAT
* *
15220864 AAATGATTTTAAGTTGTATTTCTTTTCATTTTTGGTT-AAACAGATCATAATTGGATGTTTGCCT
1 AAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCT
* ** * * * * * *
15220928 TGAGAAACGTGAAATGAAAGCCATCCATTGATAAGGAAGGTGCATTTATATTCACTCATGCCTTT
66 CGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* * * *
15220993 GAATGAATAGTTACTCGCTTTAAATGGTTTTATAATCTTGTAAATGATTTTAAGTTGAATTTGTT
131 GAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTGTAAATGATTTTAAGTTGAATTTTTT
* *** ** * * * * *
15221058 TTCATTTCTGGAAAAATTTGATCGTAATTGGATATTTGCCTTGAGAAATGTGAAGCGAAAGCTAT
196 TTCATTTTTATTAAAACAT-ATCATAATTGGATGTTTGCCTCGAGAAACGTGAAGCGAAAGCCAT
* * * *
15221123 CCATTGACAAGAAAGGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTAATTACTCGGTTTAAA
260 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCGCTTTAAA
15221188 TGGTTTTATAATCTTAT
325 TGGTTTTATAATCTTAT
* * *
15221205 AAATGATTTTAAGTTGAACTTTTTTTTCATTTTTAGCTAAAACAGATCATAATTGGATGTTTGTC
1 AAATGATTTTAAGTTGAA-TTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCC
* * * * * * * **
15221270 TCAAGAAATGTGAAGCGAAAGGCATCCATTTATAAGAAAGGTCTATTTATAGTTGCTCATGCCTT
65 TCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTT
* * * * * * *
15221335 CGAAATACTTGTAACTCGCTTTAAATGGTTTTA-AATCTTGTACATAATTTTAAGTTGAATTTTG
130 CGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTGTAAATGATTTTAAGTTGAATTTTT
* * * * * *
15221399 TTTCATTTTTATTAAAACAAATCATAATTGAATGTTTGGCTCGGGAAATGTTAAGCGAAAGCCAT
195 TTTCATTTTTATTAAAACATATCATAATTGGATGTTTGCCTCGAGAAACGTGAAGCGAAAGCCAT
* * * * * *
15221464 CCATTGAGAA-AGAAAGTCCATTTATAGTCATTCATGCCCTCAAAAGACTAGTTACAT-GCTATC
260 CCATTGACAAGA-AAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTAC-TCGCTTTA
*
15221527 AATGGTTTTATAATCTTTT
323 AATGGTTTTATAATCTTAT
* *
15221546 AAATGATTTTAAGTTG-ATTTTGTTTTCATTTTTGGTTAAAACAAATCATAATTGGATGTTTGTC
1 AAATGATTTTAAGTTGAATTTT-TTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCC
** * * * * *
15221610 TTAAGAAACATGAATCGAAAGCCATCCATTGATAAGAAAAGTCCATATATATTCACTCATGCCTT
65 TCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTT
* *
15221675 CGAAAGAATAGTTACTCGCTTTAAATGGTTTTATAATCTTGTAAATGATTTTAAGTTGAA-TTTT
130 CGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTGTAAATGATTTTAAGTTGAATTTTT
* ** * * *
15221739 TTTCATTTTTGGTTAAAACCGATCATAATTGGATGTTTGCCTTGAGAAACATGAAGCGAAAGTCA
195 TTTCATTTTT-ATTAAAACATATCATAATTGGATGTTTGCCTCGAGAAACGTGAAGCGAAAGCCA
* * * * *
15221804 TCCATTGACAAGAAAGGTCCA-TTATAGTCACTCATGCCTTTGAAAGCCTAATTACTCACTTTAA
259 TCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCGCTTTAA
*
15221868 ATGGTTTTATAATCCTAT
324 ATGGTTTTATAATCTTAT
*
15221886 AAATGATTTTAAGTTGAACTTTTATTTT-ATTTTATTTTGGCTT-AAACTGATCATAATTGGATG
1 AAATGATTTTAAGTTGAA-TTTT-TTTTCA---T-TTTTGG-TTAAAACAGATCATAATTGGATG
* * * * * * * * *
15221949 TTTGCCTCAAGAAACGAGAAGAGAAAGCCATCCATTGACAAGAAAAGTCTATTTACAATTAGTAA
59 TTTGCCTCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCA
** * ** * *
15222014 TGCCTTCGAAACCCTTGTTACTTGCTTTAAATGGCTTTATAATCTTGTAAATGATTTTAAGTTGC
124 TGCCTTCGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTGTAAATGATTTTAAGTTGA
* * * * *
15222079 ATTTGTTTCTCATTTTTGGTTAAAACATATCATAATTGGATATTTGCCTTGAGAAACATGAAGC-
189 ATTT-TTTTTCATTTTT-ATTAAAACATATCATAATTGGATGTTTGCCTCGAGAAACGTGAAGCG
* * * * * * *
15222143 AAATGCCATCCATTGATAAGAAAAGTTCATTTGTAGTCACCCATGGCTTCGAAAGGCTAGTTACG
252 AAA-GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACT
* *
15222208 CACTTTCAATGGTTTTATAATCTTAT
316 CGCTTTAAATGGTTTTATAATCTTAT
* * * *
15222234 AAATGATTTTAAGTGGAA-TTGTTTTCATTTTTGGTTAAAACATATCATAATTGGATTTTTGCCT
1 AAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCT
* * * * * *** *
15222298 TGGGTATCGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTAGAGTCAGGAATACCTTC
66 CGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* * * *
15222363 GAAAGACTAGTAACTCACTTTAAAGGGTTTTATAATCATATAAATGATTTTAAGTTGAA-TTTTT
131 GAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTGTAAATGATTTTAAGTTGAATTTTTT
* * * *
15222427 TTCATTTTTGATTAAAACAGATTATAA-TGAGTAT-TTTGCCTCGAG-AACGTGAAGCGATAGGC
196 TTCATTTTT-ATTAAAACATATCATAATTG-G-ATGTTTGCCTCGAGAAACGTGAAGCGAAAGCC
* *
15222489 ATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTAGACAA-ACTTGTTACTCGCTTT
258 ATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGA-AAGACTAGTTACTCGCTTT
* *
15222553 AAATGGGTTTATAATCTTGT
322 AAATGGTTTTATAATCTTAT
* * * *
15222573 AAATGATTTTAAGTTGTATTTCTTTTCATTTTTGCTTAAAATAGATCATAATTGGATGTTTGCCT
1 AAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCT
* * * * * *
15222638 CGAAAAACGTGAAACAAAAGCCATCCATTGAGAAGAAAAGTCTATTTATAGTCGCTCAT-CCTTC
66 CGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* * * * * *
15222702 AAAAGACTAATTACTCGCTTTTAATGCTTTTATAATCTTATAAATGATTTTAAGTTG-ATTGTTT
131 GAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTGTAAATGATTTTAAGTTGAATT-TTT
* * * * * * **
15222766 TTTCATATTTAGTTAAAACATTTCATAATTGGATGTTTGCCTTGGGAAGCATGCAA-C-ATAAAT
195 TTTCATTTTTA-TTAAAACATATCATAATTGGATGTTTGCCTCGAGAAACGTG-AAGCGA-AAGC
* * * * ** * * **
15222829 CATCAATTGACAAGAAAAGTCCATTTATAGTCATTTATGCCTTTGAAATCCTAATTTCTCTATTT
257 CATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCGCTTT
* *
15222894 GAATGGTTTTATAATCTTTT
322 AAATGGTTTTATAATCTTAT
** * * *
15222914 AAATGATTTTATCTTGAATTGTTTTTCATTTTTGGCTAAAACAGATCTTAATTGGATGTTTGCCT
1 AAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCT
* * * * * * * *
15222979 TGGGAAATGAGAAGCGAAAGCCATCCATTGATAAGAAAAGTCCATTTACAGTCAGTAATGCCTTC
66 CGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* * * * * * *
15223044 CAAACAATTGTTACTCACTTTAAATGGTTTTATAATCTTGTAATTAATTTTAAGTTGAATTCTTT
131 GAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTGTAAATGATTTTAAGTTGAATTTTTT
* * * *
15223109 TTCATTTTTAGTTAAAACATATCATAATTGGATGCTTGCCTCGAGAAACATG-AGTGAAACCCAT
196 TTCATTTTTA-TTAAAACATATCATAATTGGATGTTTGCCTCGAGAAACGTGAAGCGAAAGCCAT
* * * *
15223173 CCATTGACAAGAAAAGTTCATTTATATTCACTCATGCCTTCGAAAGAATAGTTACTAGCTTTAAA
260 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCGCTTTAAA
15223238 TGGTTTTATAATCTTAT
325 TGGTTTTATAATCTTAT
* ** *
15223255 AAATGATTTTAAGTT-TATTTTTTTCTCATTTTTGGTTAAAGTAGATCTTAATTGGATGTTTGCC
1 AAATGATTTTAAGTTGAATTTTTTT-TCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCC
* * * * * *
15223319 TCGAGAAATGTAAAACGAAAGCCATCCATTGACAAG-AAAGATTCATTTGTATTCACTCATGCCT
65 TCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAG-TCCATTTATAGTCACTCATGCCT
** * ** *
15223383 TTTAAAGAATAGTTACTTGCTTTAAATGGTTTTATAATCTTGTAAATAATTTTAAGTTGAATTTT
129 TCGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTGTAAATGATTTTAAGTTGAATTTT
** * * *
15223448 TTTTCATTTTTGGTAAAGATCGAT-T-GTAATTGGATGTTTGCCTCGAGAAATGTGAAGCAAAAG
194 TTTTCATTTTTATTAAA-A-C-ATATCATAATTGGATGTTTGCCTCGAGAAACGTGAAGCGAAAG
* * * * * * *
15223511 CCATCCATTGACAAGAAAGGTCCATTTATAGTCACTCATACTTTTGAAAGCCTAATTACTCGTTT
256 CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCGCTT
* *
15223576 TAAATAGTTTTATAATTTTAT
321 TAAATGGTTTTATAATCTTAT
* * * * *
15223597 AAATGATTTTAAGTTAAACTTTTTTTTTTATTTTTGGCTAAAGC-GTATCATAATTTGATGTTTG
1 AAATGATTTTAAGTTGAA--TTTTTTTTCATTTTTGGTTAAAACAG-ATCATAATTGGATGTTTG
* ** ** * * * * * *
15223661 CCTCAAGAAACAAGAAAAGAAAGTCATCCATTGACAAGAAAAGTCCATTTACATTCAGTAATGCT
63 CCTCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC
** * * *
15223726 TTCGAAACCCTTGTTACTCACTTTCAATGGTTTTATAATCTTGTAAAATTATTTTAAGTTGAATT
128 TTCGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTGT-AAATGATTTTAAGTTGAA-T
* * * * * * * *
15223791 TTTTTTCTCATTTTTTGTTAAAACATATCATAATTAGATATTTTCCTTGAGAAACATGAAGTGGA
191 TTTTTT-TCA-TTTTTATTAAAACATATCATAATTGGATGTTTGCCTCGAGAAACGTGAAGCGAA
* * * * *
15223856 AGCGATCCATTGATAAGAAAAGTCCATTTATAGTCACCCATGCCTTTGAAAGACTAGTTACTCAC
254 AGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCGC
*
15223921 TCTT-AATGG-TTTATAATCTCAT
319 T-TTAAATGGTTTTATAATCTTAT
* *
15223943 AAATGATTTTAAGTTGAGTTTTTGTTTTCCATTTTTGGTTAAAACAGATCATAATTGGATGTTTA
1 AAATGATTTTAAGTTGA-ATTTT-TTTT-CATTTTTGGTTAAAACAGATCATAATTGGATGTTTG
* * * * * * * * ***
15224008 CCTTGGGTAACATGAAGAGAAAGCCATCCACTAACAAGAAAAGTCCATTTATTGTCAGGAATGCC
63 CCTCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC
* * * *
15224073 TTCGAAAAACTAGTTACTCA-TGTTAAA-GAATTTTATAATCTTATAAAGGATTTTAAGTTGAAT
128 TTCGAAAGACTAGTTACTCACT-TTAAATG-GTTTTATAATCTTGTAAATGATTTTAAGTTGAA-
* * * *
15224136 TTTTTTTTCATTTTTGGTTAAAACATATCATAATTAGAAT-TTTGCCTCAAG-AACATGAAGCGA
190 TTTTTTTTCATTTTT-ATTAAAACATATCATAATT-GGATGTTTGCCTCGAGAAACGTGAAGCGA
* * * * * * * *
15224199 TAGACATCCAATT-ATAAGAAAAGACCATTTATAGTCATTCATGCCTTTGAAAGACTTGTTACTT
253 AAGCCATCC-ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTC
* *
15224263 GCTTTAAATGGTTTTATAAACTTGT
317 GCTTTAAATGGTTTTATAATCTTAT
* * *
15224288 AAATGATTTTAAGTT-AA---ATTTT--TTTTTCGTTAAAATAGATCATAATTGGATGTTTGCCT
1 AAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCT
* * * ** *
15224347 CAAGAAATGTGAAACGAAAGCCATCCATTGGGAAGAAAAGTCCACTTATAGTCACTCATGCCTTC
66 CGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* * * * * * *
15224412 AAAAGACTAGTAACT-ACTTTCAATGGTTATGTAATTCTATG--AAGGATTTTAAGTTGAGA--C
131 GAAAGACTAGTTACTCACTTTAAATGGTTTTATAA-TCT-TGTAAATGATTTTAAGTTGA-ATTT
* * * *
15224472 TTTTTCATTTTTAGTTAAAACATACCATAAGTGGATGTTTGCCTTGAGAAATGTGCAA-CGTAAA
193 TTTTTCATTTTTA-TTAAAACATATCATAATTGGATGTTTGCCTCGAGAAACGTG-AAGCG-AAA
* * * * * * ** *
15224536 -TCATCAATTGGCAAGAAAAGTCCGTTTATAGTCATTCATGCCTTTGAAATCCTAGTTTCTC-CG
255 GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCGC-
*
15224599 TTTAAATGGTTTTATAATCTTTT
319 TTTAAATGGTTTTATAATCTTAT
* * * * * * *
15224622 AAATGATTTTAAGTTGAATTCTTTTTCATTTTTGGCTAAAATATATCACATTTGGATGTTTACCT
1 AAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCT
* * *** * * *
15224687 TGGGAAATAAGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTACAGTCAATAATGCCTTC
66 CGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* * * * * *
15224752 CAAACACTTGTTACTCACTTTAAATGGTTTTATAATCATGTAATTGATTTTAAGTTGATTTTTTT
131 GAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTGTAAATGATTTTAAGTTGAATTTTTT
* * * * *
15224817 TTCATTTTTAGTTAAAACATATCACAATTGGATGTTTTCCTTGAGAAACGTGAAGCAAAAGCTAT
196 TTCATTTTTA-TTAAAACATATCATAATTGGATGTTTGCCTCGAGAAACGTGAAGCGAAAGCCAT
* * * * * * * * * *
15224882 CTATTGATAAGAAAAGTCCATTTATATTTACTTATGCCCTCAAAAGAATAATTACTCGCATTAAA
260 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCGCTTTAAA
** *
15224947 TACTTTTATAATCTTGT
325 TGGTTTTATAATCTTAT
* * *
15224964 AAATGATTTTCAGTTGAATTTTTTTTTCATTTTTGGATAAAACAGATCATAATTGGATGTTT-CA
1 AAATGATTTTAAGTTGAA-TTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCC
* * *
15225028 TCGAGAAACGTGAAGCGAAAGCCATTCATTGACAAGAAAGGTCCATTTACAGTCACTCATGCCTT
65 TCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTT
* * * * * *
15225093 AGAAAGCCTAATTATTCGCTTTAAATAGTTTTATAATCTTGTAAATGATTTTAAGTTGAATTTTT
130 CGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTGTAAATGATTTTAAGTTGAATTTTT
** * * * *
15225158 TTCTCATTTCTGGTTAAAATATATCATAATTGGATATTTACCTCGAGAAACGTGAAGCAAAAGCC
195 TT-TCATTT-TTATTAAAACATATCATAATTGGATGTTTGCCTCGAGAAACGTGAAGCGAAAGCC
* * * * * * *
15225223 AACCATTAACAAAAAAAATCCATTTATAGTCACCCATGCCTTCGAAAGACTAGTTACTCACTTTC
258 ATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCGCTTTA
*
15225288 AATGGTTTTATAATATTAT
323 AATGGTTTTATAATCTTAT
* * *
15225307 AAATGATTTTGAGTTGAA---TATTT--TTTTTGGTTAAAACAGATCATAGTTGGATGTTTGCCT
1 AAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCT
* * * * * * * ***
15225367 TGGGTAACGTGAAGCGGAAGCCATCCACTGATAAGAAAAGTCCATTTATAGTTAGGAATGCCTTC
66 CGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* * * *
15225432 GAAAGACTAGTTACTCACGTTAAAGGGTTTCATAATCTTGTAAATGATTTGAAGTTGAATTTTTT
131 GAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTGTAAATGATTTTAAGTTGAATTTTTT
* * * * * * * *
15225497 TTCATTTTTGGTTAAAATAGAACATAATTAGAAT-TTTGCCTCG-GGAACGTGAAGCGATAGGCA
196 TTCATTTTT-ATTAAAACATATCATAATT-GGATGTTTGCCTCGAGAAACGTGAAGCGAAAGCCA
** * * *
15225560 GGCATTGACAAGAAAAGTCCATGTATAGTCACTCATGCCTTCAAAAGACTTTGTTACTCGCTTTA
259 TCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGAC-TAGTTACTCGCTTTA
* *
15225625 AATTGTTTTATAATCTTGT
323 AATGGTTTTATAATCTTAT
* * * *
15225644 CAATGATTTTAAGTTGAATTTTTTTTCA-TTTTGGTTAAAACATATC-TAATTGAATGTTTACCT
1 AAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCT
* ** * * *
15225707 CGAGAAATGTGAAATGAAGGCCATCGATTGAGAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
66 CGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* * * * * *
15225772 AAAAGACTAGTTACTTACTTTTAATGGTTTTATAATCTTGTAAAGGATTTTATGTTGATTTTTTT
131 GAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTGTAAATGATTTTAAGTTGAATTTTTT
* * * * * * ** *
15225837 TTCATTCTTAGTTAAAACATATCATAAATGGATTTTTGGCTTGGGAAGTGTGCAA-CGTAAA-TC
196 TTCATTTTTA-TTAAAACATATCATAATTGGATGTTTGCCTCGAGAAACGTG-AAGCG-AAAGCC
* * * ** * *
15225900 ATCAATTGACAAGAAAAGTTCATTTATAGTCATTCATGCCTTCGAAATCCTAGTTTCTAG-TTTA
258 ATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCGCTTTA
* * *
15225964 AATGGTTCTATAATATTTT
323 AATGGTTTTATAATCTTAT
* * * ** * *
15225983 AAATGATTTTAAGTT-ACATATTTTTTCATTTTTTGCTAAAACAGATCACGATTAGATGTTTACC
1 AAATGATTTTAAGTTGA-ATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCC
* * * * * * * *
15226047 T-TAGGAAATGAGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTACAATCAGTAATGCCT
65 TCGA-GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC-
* * * * * * *
15226111 TTC--AAGCATTTGTTACTCACTTTAAATGATTTTATAGTCTTATAATTAATTTTAAGTTGAA-T
128 TTCGAAAG-ACTAGTTACTCACTTTAAATGGTTTTATAATCTTGTAAATGATTTTAAGTTGAATT
* * * *
15226173 TTTTTTCTTTTTTGGTTAAAACATATCATAATTGGATGTTTGCCTC-AAAAAGGTGAAGCGAAAG
192 TTTTTTCATTTTT-ATTAAAACATATCATAATTGGATGTTTGCCTCGAGAAACGTGAAGCGAAAG
* * * * * * *
15226237 CCATCCATTGACAAGAAAAGTCGATTTATATTTACTTATTCCTTTGAAAGAATAGTTACTCGCTT
256 CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCGCTT
**
15226302 TAAATGGTTTTATAATCTCGT
321 TAAATGGTTTTATAATCTTAT
* * * * *
15226323 AAATGATTTTAAGTTGAATTTTTTTCTCATTTTTGGTTAAAAAATATCAAAATTGGATATTTACC
1 AAATGATTTTAAGTTGAATTTTTTT-TCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCC
* *
15226388 TTGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCAC-CTATGCCC
65 TCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTC-ATGCCT
* * * *
15226452 TCGAAAGACTAGTCACTCACTTTCAATGGTTTTATAATCTTATAAATGATTTTAAGTAGAATTTG
129 TCGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTGTAAATGATTTTAAGTTGAATTT-
* * * * * *
15226517 TTTTTCGTTTTCAGCTAAAACAGATCATAATTGGATGTTTGCCTCAAGAAACGTGAAGCGAAAGG
193 TTTTTCATTTTTA-TTAAAACATATCATAATTGGATGTTTGCCTCGAGAAACGTGAAGCGAAAGC
* * * * * *
15226582 CATCCATTGATAGGAAAGGTCCATTTATAATCACTCATGCCTTCGAAAGCCTTA-TTACTCACTT
257 CATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGAC-TAGTTACTCGCTT
*
15226646 TAAATGATTTTATAATCTTAT
321 TAAATGGTTTTATAATCTTAT
* * *
15226667 AAATGATTTTAAGTTGAACTTTTTTTTTCATTTTTGGCTAAAACAAATCATAATTGGATGTTTGT
1 AAATGATTTTAAGTTGAA--TTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGC
* * * * * *
15226732 CT-TAGGAAATGAGAAGCAAAAGCCATCCATTGACAAGAAAGGTCTATTTATAGTCACTCATGCC
64 CTCGA-GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC
** * *
15226796 TTCGAAAGACTAAG-TACTCACTTTAAATACTTTCATAATCTTATAAATGATTTTAAGTTGAATT
128 TTCGAAAGACT-AGTTACTCACTTTAAATGGTTTTATAATCTTGTAAATGATTTTAAGTTGAATT
** * * * * * * *
15226860 TTTTCCCATTTTTGGTTAAAACATATCATACTTGGA-ATTTACATCAAGAAACATGAAGCGAAAG
192 TTTTTTCATTTTT-ATTAAAACATATCATAATTGGATGTTTGCCTCGAGAAACGTGAAGCGAAAG
* * * * * *
15226924 TCATCCATTGATAAAAAAATTCCATTTATAGACACTCATGCCTTCGAAAGACTAGTTACACGCTT
256 CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCGCTT
* *
15226989 TAAATGGTTTGATCATCTTAT
321 TAAATGGTTTTATAATCTTAT
* * * * * * *
15227010 AAATGATTTTAACTTG-ATTTTGTTTTCATTTTTTGCTAATATAGATCATAAATCGATGTTTGCC
1 AAATGATTTTAAGTTGAATTTT-TTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCC
* * * * * *
15227074 TCGAGAAACGTGAAGCAAAAGCCATTCATTAAGAA-ATAAAGTCCATTTATAGTCATTCATGCCC
65 TCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGA-AAAGTCCATTTATAGTCACTCATGCCT
* * * * *
15227138 TCAAAAGACTAGTTA-T-ACGTTTTCAATAGTTTTATAATCTTATGAAA-GATTTTATGTT-AAT
129 TCGAAAGACTAGTTACTCAC--TTTAAATGGTTTTATAATCTTGT-AAATGATTTTAAGTTGAAT
* * * *
15227199 TTTGTTTTCATTTTTGATTAAAACAGATCATAATTGGATGTTTGTCTTGAGAAACGTGAAGCAAA
191 TTT-TTTTCATTTTT-ATTAAAACATATCATAATTGGATGTTTGCCTCGAGAAACGTGAAGCGAA
* * * * * *
15227264 AGCCATCCATTGAAAAGAAAAATCTA-TTATATTCACTCATGCCTTCAAAAGAGTAGTTACTCGC
254 AGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCGC
* *
15227328 TTTAAATGGTTTTATAATCATGT
319 TTTAAATGGTTTTATAATCTTAT
* * * * * * *
15227351 AAATGATTTTAAGTTCAATTTTTTTCTCCTTTTTAGTTAAAACATATCATACTTGGATATTTACC
1 AAATGATTTTAAGTTGAATTTTTTT-TCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCC
15227416 TCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAA
65 TCGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAA
15227455 TGTCACGACC
Statistics
Matches: 6549, Mismatches: 1230, Indels: 357
0.80 0.15 0.04
Matches are distributed among these distances:
332 3 0.00
333 41 0.01
334 88 0.01
335 33 0.01
336 158 0.02
337 113 0.02
338 313 0.05
339 485 0.07
340 901 0.14
341 1478 0.23
342 840 0.13
343 673 0.10
344 468 0.07
345 504 0.08
346 89 0.01
347 280 0.04
348 82 0.01
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.38
Consensus pattern (341 bp):
AAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCT
CGAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
GAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTGTAAATGATTTTAAGTTGAATTTTTT
TTCATTTTTATTAAAACATATCATAATTGGATGTTTGCCTCGAGAAACGTGAAGCGAAAGCCATC
CATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCGCTTTAAAT
GGTTTTATAATCTTAT
Found at i:15228573 original size:13 final size:13
Alignment explanation
Indices: 15228555--15228579 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15228545 ATTTTCAAAA
15228555 ATTTTATAAAATT
1 ATTTTATAAAATT
15228568 ATTTTATAAAAT
1 ATTTTATAAAAT
15228580 CCCATTTTNN
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATTTTATAAAATT
Found at i:15237426 original size:42 final size:42
Alignment explanation
Indices: 15237296--15237439 Score: 135
Period size: 42 Copynumber: 3.4 Consensus size: 42
15237286 TGACCCGGCT
* ** * * * *
15237296 ATGTGCGAGTAGGAGTGTACATAAGCCGATGCTTACCCGACT
1 ATGTGCTAGTAGGAGTGCGCATAAGCTGATGCTGACCCAACC
* * ** * ** *
15237338 ATATGCGAGGGGGAGTGCGCATAAGCTGATGCTGACTCGGCT
1 ATGTGCTAGTAGGAGTGCGCATAAGCTGATGCTGACCCAACC
*
15237380 ATGTGTTAGTAGGAGTGCGCATAAGCTGATGCTGACCCAACC
1 ATGTGCTAGTAGGAGTGCGCATAAGCTGATGCTGACCCAACC
*
15237422 ATGTGCTAGTGGGAGTGC
1 ATGTGCTAGTAGGAGTGC
15237440 ATATGAGCTG
Statistics
Matches: 82, Mismatches: 20, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
42 82 1.00
ACGTcount: A:0.24, C:0.19, G:0.33, T:0.24
Consensus pattern (42 bp):
ATGTGCTAGTAGGAGTGCGCATAAGCTGATGCTGACCCAACC
Found at i:15237436 original size:84 final size:84
Alignment explanation
Indices: 15237286--15237439 Score: 200
Period size: 84 Copynumber: 1.8 Consensus size: 84
15237276 GTAATGATAT
* * * *
15237286 TGACCCGGCTATGTGCGAGTAGGAGTGTACATAAGCCGATGCTTACCCGACTATATGCGAGGGGG
1 TGACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGATGCTGACCCAACCATATGCGAGGGGG
15237351 AGTGCGCATAAGCTGATGC
66 AGTGCGCATAAGCTGATGC
* ** * * * * *
15237370 TGACTCGGCTATGTGTTAGTAGGAGTGCGCATAAGCTGATGCTGACCCAACCATGTGCTAGTGGG
1 TGACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGATGCTGACCCAACCATATGCGAGGGGG
15237435 AGTGC
66 AGTGC
15237440 ATATGAGCTG
Statistics
Matches: 58, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
84 58 1.00
ACGTcount: A:0.23, C:0.21, G:0.33, T:0.23
Consensus pattern (84 bp):
TGACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGATGCTGACCCAACCATATGCGAGGGGG
AGTGCGCATAAGCTGATGC
Found at i:15237485 original size:2 final size:2
Alignment explanation
Indices: 15237480--15237523 Score: 70
Period size: 2 Copynumber: 22.0 Consensus size: 2
15237470 ATGGTGATGG
* *
15237480 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT AG AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15237522 AT
1 AT
15237524 GTGTGTTATA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (2 bp):
AT
Found at i:15241110 original size:28 final size:30
Alignment explanation
Indices: 15241052--15241111 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
15241042 TTTTTGAAAT
* *
15241052 TTACACTTTTGCCCCTATAAAAGTCAAAAA
1 TTACACTTTTGCCCCTATAAAACTAAAAAA
*
15241082 TTACATTTTTGCCCC-A-AAAACTAAAAAA
1 TTACACTTTTGCCCCTATAAAACTAAAAAA
15241110 TT
1 TT
15241112 GCCCATAAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 12 0.44
29 1 0.04
30 14 0.52
ACGTcount: A:0.42, C:0.22, G:0.05, T:0.32
Consensus pattern (30 bp):
TTACACTTTTGCCCCTATAAAACTAAAAAA
Found at i:15241933 original size:171 final size:170
Alignment explanation
Indices: 15241642--15243513 Score: 2052
Period size: 171 Copynumber: 11.0 Consensus size: 170
15241632 GGGTCGTGAC
* * * *
15241642 AAACGTGAAGCAAAAGCCATCCGTTGACAAGAAAGGTCCATTTATAGTCACTCATGCCTT-TAAA
1 AAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA
* * *
15241706 GGCCTAATTACTCGCTTGAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTT
66 -GACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTT
*
15241771 ATTTTTGGTTAAAACATATCCTAATTGGATGTTTGCCGAAGG
130 ATTTTTGGTTAAAACATATCATAATTGGATGTTTGCCGAA-G
* * * * **
15241813 AAACGTGAAGCGAAAGGCATCCATTAACAA-AAAAGGTCTATTTATAATCGTTCATGCCTTCGAA
1 AAACGTGAAGCGAAAGCCATCCATTGACAAGAAAA-GTCCATTTATAGTCACTCATGCCTTCGAA
* * ** * * * *
15241877 AGACTTGTTACTCGTTTTAAATTATTTTATAATCTTGTACATGATTTTAGGTTGAATTTTGTTTT
65 AGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTT
* ** * * *
15241942 GTTTTTTATTAAAACAGATCATAATTGGATGTTTGCCTAGG
130 ATTTTTGGTTAAAACATATCATAATTGGATGTTTGCCGAAG
* * * * *
15241983 AAACGTGAAGCAAAAGTCATCCATTGAGAAGGAAAGTCCATTTATAGTCATTCATGGCC-TCGAA
1 AAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT-GCCTTCGAA
* *
15242047 AGACTAGTTACACGCTTTAAATGGTTTTATAATCTTATAAATGAATTTAAGTTG-ATTTTGTTTT
65 AGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTT-TTTT
* * * * * *
15242111 CATTTTTTGTGACAATAGATCATAATTGGATGTTTGCCTTG-AG
129 TATTTTTGGTTAAAACATATCATAATTGGATGTTTGCC--GAAG
* * *
15242154 AAATGTGAAGCGAAAGCCATCCATTGACAAGAAAATTCCATTTATATTCACTCATGCCTTCGAAA
1 AAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA
* * * * * *
15242219 GAATAGTTACACGCTTTAAATGATTTTATAATCTTGTGAATGATTTTAAGTTGAATTATTTTTCT
66 GACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATT-TTTTTTT
* *
15242284 -TTTTTAGTTAAAACATATCATAATTGGATGTTTGTCTTGAA-
130 ATTTTTGGTTAAAACATATCATAATTGGATGTTTG-C-CGAAG
* * * *
15242325 AAACGTTAAGCGAAATCCAT-CATTTGACAAGAAAAGTCCATTTATATTCACTCATGCCTTCAAA
1 AAACGTGAAGCGAAAGCCATCCA-TTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA
* *
15242389 AGAATAGTTACTCGCTTTAAATGGTTTTATAATCTTGTAAATGATTTTAAGTTG-ATTTTTTTCT
65 AGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTT-T
* * * * * *
15242453 CATTTTTGGTTAAAAAATATCATAATCGGATATTTTCCTTG-AC
129 TATTTTTGGTTAAAACATATCATAATTGGATGTTTGCC--GAAG
* * *
15242496 AAACGCGAAGCGAAAGCCATCCATT-AGCAAGAAAAGTCCATTTATATTCATTCATGCCTTCGAA
1 AAACGTGAAGCGAAAGCCATCCATTGA-CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA
* * * *
15242560 AGAATAGTTACTCGCTTTAAATTGTTTTATAATCTTGTAAATGATTTTAAGTTGAATTTTTTTTC
65 AGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTT
* *
15242625 ATTTTTGGTTAAAAC-TGATCATAATTGCATGTTTGCC-ATGAT
130 ATTTTTGGTTAAAACAT-ATCATAATTGGATGTTTGCCGA--AG
* * * * *
15242667 AAACATGAAACGAAAGCCATCCATTGACAAAAAAAGTCCATTTATGGTCATTCATGCCTTCGAAA
1 AAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA
* * * * * *
15242732 G-CTTAATTACTCGCTTTAAATGATTCTATAATCTTATAAATGATTTTAAGTTAAAATTTTTTTC
66 GAC-TAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTT
* * *
15242796 ATTTTTGGATAAAACAGATCATAATTGGATGTTTGCCTTAAG
130 ATTTTTGGTTAAAACATATCATAATTGGATGTTTGCC-GAAG
* ** * *
15242838 AAACATGAAGCGAAAGGTATCCATTGACAAGAAAGGTCCATTTATAATCACTCATGCCTTCGAAA
1 AAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA
* * * * * *
15242903 GTCTTGTTACTCGCTTCAAATGGTTTTATAATCTCATACATGATTTTAAGTTGAATTTTATTTTA
66 GACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTTA
** * * *
15242968 TTTTTTATTAAAACAAATCATAATTGGATGTTTACATCG-GG
131 TTTTTGGTTAAAACATATCATAATTGGATGTTTGC--CGAAG
* * * * * * *
15243009 AAACATAAAGCGAAAGCCATCCATTGAGAAGGAAAGTCTATTTATAGTC-CTTCATGCCCTCAAA
1 AAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCAC-TCATGCCTTCGAA
* * *
15243073 AAACTAGTTACACGCTTTAAATGGTTTTATAATCTTACAAATGATTTTAAGTTG-ATTTTGTTTT
65 AGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTT-TTTT
* * *
15243137 CATTTTTGGCTAAAACAGT-TCATAATTGGATTTTTGTCTCGAA-
129 TATTTTTGGTTAAAACA-TATCATAATTGGATGTTTG-C-CGAAG
* * * *
15243180 AAACATGAAGCGAAAGCCATCCATTGACAAGTAAAGTCCATTTATATTCACTCATGCCTTTGAAA
1 AAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA
* *
15243245 GAATAGTTACTCGCTTT-AATGG-TTTATAATCTTGTAAATGATTTTAAGTTGAATTTTTTTTTT
66 GACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA--TTTTTTTT
15243308 TATTTTTGGTTAAAATCGATA--ATAATTGGATGTTTGCCTTG-AG
129 TATTTTTGGTTAAAA-C-ATATCATAATTGGATGTTTGCC--GAAG
* * *
15243351 AAACATGAAG-AAAAGCCATCCATTGACAA-AAAAGGTCCATTTATAGTCACTCATGCCTTCAAA
1 AAACGTGAAGCGAAAGCCATCCATTGACAAGAAAA-GTCCATTTATAGTCACTCATGCCTTCGAA
* *
15243414 AGCCTAAG-TACTCGCTGTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTT
65 AGACT-AGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTT
* * *
15243478 TACATTTTTAGCTAAAACATATCATAATTAGATGTT
129 T--ATTTTTGGTTAAAACATATCATAATTGGATGTT
15243514 ATGTCAAGCC
Statistics
Matches: 1442, Mismatches: 202, Indels: 113
0.82 0.11 0.06
Matches are distributed among these distances:
169 41 0.03
170 226 0.16
171 1085 0.75
172 85 0.06
173 5 0.00
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.38
Consensus pattern (170 bp):
AAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA
GACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTTA
TTTTTGGTTAAAACATATCATAATTGGATGTTTGCCGAAG
Found at i:15242711 original size:513 final size:511
Alignment explanation
Indices: 15241642--15243513 Score: 2278
Period size: 513 Copynumber: 3.7 Consensus size: 511
15241632 GGGTCGTGAC
* * * * *
15241642 AAACGTGAAGCAAAAGCCATCCGTTGACAAGAAAGGTCCATTTATAGTCACTCATGCCTT-TAAA
1 AAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA
** * * *
15241706 GGCCTAATTACTCGCTTGAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTT
66 -GAATAATTACTCGCTTTAAATGATTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTCT
* * *
15241771 ATTTTTGGTTAAAACATATCCTAATTGGATGTTTGCC--GAAGGAAACGTGAAGCGAAAGGCATC
130 ATTTTTGGTTAAAACATATCATAATTGGATGTTTGCCTTGAA-GAAACATGAAGCGAAAGCCATC
* * ** * * *
15241834 CATTAACAAAAAAGGTCTATTTATAATCGTTCATGCCTTCGAAAGACTTGTTACTCGTTTTAAAT
194 CATTGACAAAAAAGGTCCATTTATAATCACTCATGCCTTCAAAAGACTAGTTACTCGCTTTAAAT
** * * * * * * *
15241899 TATTTTATAATCTTGTACATGATTTTAGGTTGAATTTTGTTTTGTTTTTTATTAAAACAGATCAT
259 GGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTATTTTATTTTTTATTAAAAAATATCAT
* * *
15241964 AATTGGATGTTTGCCTAGGAAACGTGAAGCAAAAGTCATCCATTGAGAAGGAAAGTCCATTTATA
324 AATTGGATGTTTACCTAGGAAACGTGAAGCGAAAGCCATCCATTGAGAAGGAAAGTCCATTTATA
* *
15242029 GTCATTCATGGCCTCGAAAGACTAGTTACACGCTTTAAATGGTTTTATAATCTTATAAATGAATT
389 GTCATTCAT-GCCTCGAAAGAATAGTTACACGCTTTAAATGGTTTTATAATCTTATAAATGATTT
* * * *
15242094 TAAGTTGATTTTGTTTTCATTTTTTGTGACAA-TAGATCATAATTGGATGTTTGCCTTGAG
453 TAAGTTGATTTTGTTTTCATTTTTGGTTAAAACT-GATCATAATTGGATGTTTGCC-TGAA
** * *
15242154 AAATGTGAAGCGAAAGCCATCCATTGACAAGAAAATTCCATTTATATTCACTCATGCCTTCGAAA
1 AAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA
* * * *
15242219 GAATAGTTACACGCTTTAAATGATTTTATAATCTTGTGAATGATTTTAAGTTGAATTATTTTTCT
66 GAATAATTACTCGCTTTAAATGATTTTATAATCTTATAAATGATTTTAAGTTGAATT-TTTTTCT
* * * * *
15242284 -TTTTTAGTTAAAACATATCATAATTGGATGTTTGTCTTGAA-AAACGTTAAGCGAAATCCAT-C
130 ATTTTTGGTTAAAACATATCATAATTGGATGTTTGCCTTGAAGAAACATGAAGCGAAAGCCATCC
* *
15242346 ATTTGACAAGAAAA-GTCCATTTATATTCACTCATGCCTTCAAAAGAATAGTTACTCGCTTTAAA
195 A-TTGACAA-AAAAGGTCCATTTATAATCACTCATGCCTTCAAAAGACTAGTTACTCGCTTTAAA
* **
15242410 TGGTTTTATAATCTTGTAAATGATTTTAAGTTG-ATTTT-TTTCTCATTTTTGGTTAAAAAATAT
258 TGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTATTT-T-ATTTTTTATTAAAAAATAT
* * * * * * *
15242473 CATAATCGGATATTTTCCTTGACAAACGCGAAGCGAAAGCCATCCATT-AGCAAGAAAAGTCCAT
321 CATAATTGGATGTTTACCTAG-GAAACGTGAAGCGAAAGCCATCCATTGAG-AAGGAAAGTCCAT
* * * *
15242537 TTATATTCATTCATGCCTTCGAAAGAATAGTTACTCGCTTTAAATTGTTTTATAATCTTGTAAAT
384 TTATAGTCATTCATGCC-TCGAAAGAATAGTTACACGCTTTAAATGGTTTTATAATCTTATAAAT
*
15242602 GATTTTAAGTTGAATTTT-TTTTCATTTTTGGTTAAAACTGATCATAATTGCATGTTTGCCATGA
448 GATTTTAAGTTG-ATTTTGTTTTCATTTTTGGTTAAAACTGATCATAATTGGATGTTTGCC-TGA
*
15242666 T
511 A
* * * *
15242667 AAACATGAAACGAAAGCCATCCATTGACAAAAAAAGTCCATTTATGGTCATTCATGCCTTCGAAA
1 AAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA
** * *
15242732 GCTTAATTACTCGCTTTAAATGATTCTATAATCTTATAAATGATTTTAAGTTAAAATTTTTTTC-
66 GAATAATTACTCGCTTTAAATGATTTTATAATCTTATAAATGATTTTAAGTT-GAATTTTTTTCT
* * **
15242796 ATTTTTGGATAAAACAGATCATAATTGGATGTTTGCCTT-AAGAAACATGAAGCGAAAGGTATCC
130 ATTTTTGGTTAAAACATATCATAATTGGATGTTTGCCTTGAAGAAACATGAAGCGAAAGCCATCC
* * * * *
15242860 ATTGACAAGAAAGGTCCATTTATAATCACTCATGCCTTCGAAAGTCTTGTTACTCGCTTCAAATG
195 ATTGACAAAAAAGGTCCATTTATAATCACTCATGCCTTCAAAAGACTAGTTACTCGCTTTAAATG
* *
15242925 GTTTTATAATCTCATACATGATTTTAAGTTGAATTTTATTTTATTTTTTATTAAAACAA-ATCAT
260 GTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTATTTTATTTTTTATTAAAA-AATATCAT
* * * * *
15242989 AATTGGATGTTTACATCGGGAAACATAAAGCGAAAGCCATCCATTGAGAAGGAAAGTCTATTTAT
324 AATTGGATGTTTACCT-AGGAAACGTGAAGCGAAAGCCATCCATTGAGAAGGAAAGTCCATTTAT
* * *
15243054 AGTCCTTCATGCCCTC-AAAAAACTAGTTACACGCTTTAAATGGTTTTATAATCTTACAAATGAT
388 AGTCATTCATG-CCTCGAAAGAA-TAGTTACACGCTTTAAATGGTTTTATAATCTTATAAATGAT
* * * * *
15243118 TTTAAGTTGATTTTGTTTTCATTTTTGGCTAAAACAGTTCATAATTGGATTTTTGTCTCGAA
451 TTTAAGTTGATTTTGTTTTCATTTTTGGTTAAAACTGATCATAATTGGATGTTTGCCT-GAA
* * *
15243180 AAACATGAAGCGAAAGCCATCCATTGACAAGTAAAGTCCATTTATATTCACTCATGCCTTTGAAA
1 AAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA
* * * *
15243245 GAATAGTTACTCGCTTT-AATG-GTTTATAATCTTGTAAATGATTTTAAGTTGAATTTTTTTTTT
66 GAATAATTACTCGCTTTAAATGATTTTATAATCTTATAAATGATTTTAAGTTGAA--TTTTTTTC
*
15243308 TATTTTTGGTTAAAATCGATA--ATAATTGGATGTTTGCCTTG-AGAAACATGAAG-AAAAGCCA
129 TATTTTTGGTTAAAA-C-ATATCATAATTGGATGTTTGCCTTGAAGAAACATGAAGCGAAAGCCA
* * *
15243369 TCCATTGACAAAAAAGGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTAAG-TACTCGCTGTA
192 TCCATTGACAAAAAAGGTCCATTTATAATCACTCATGCCTTCAAAAGACT-AGTTACTCGCTTTA
* * * *
15243433 AATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTTACATTTTTAGCTAAAACAT
256 AATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTATTTTA-TTTTTTA-TTAAAAAAT
*
15243498 ATCATAATTAGATGTT
319 ATCATAATTGGATGTT
15243514 ATGTCAAGCC
Statistics
Matches: 1166, Mismatches: 157, Indels: 72
0.84 0.11 0.05
Matches are distributed among these distances:
510 5 0.00
511 34 0.03
512 397 0.34
513 676 0.58
514 49 0.04
515 5 0.00
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.38
Consensus pattern (511 bp):
AAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA
GAATAATTACTCGCTTTAAATGATTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTCTA
TTTTTGGTTAAAACATATCATAATTGGATGTTTGCCTTGAAGAAACATGAAGCGAAAGCCATCCA
TTGACAAAAAAGGTCCATTTATAATCACTCATGCCTTCAAAAGACTAGTTACTCGCTTTAAATGG
TTTTATAATCTTATAAATGATTTTAAGTTGAATTTTATTTTATTTTTTATTAAAAAATATCATAA
TTGGATGTTTACCTAGGAAACGTGAAGCGAAAGCCATCCATTGAGAAGGAAAGTCCATTTATAGT
CATTCATGCCTCGAAAGAATAGTTACACGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAA
GTTGATTTTGTTTTCATTTTTGGTTAAAACTGATCATAATTGGATGTTTGCCTGAA
Found at i:15244249 original size:22 final size:21
Alignment explanation
Indices: 15244210--15244250 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
15244200 CCTAGGTGGA
**
15244210 AAAATTCAAGGGAAAAGTGTG
1 AAAATTCAAGAAAAAAGTGTG
15244231 AAAATTCAAGAAAACAAGTG
1 AAAATTCAAGAAAA-AAGTG
15244251 AAAAAGGTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.54, C:0.07, G:0.22, T:0.17
Consensus pattern (21 bp):
AAAATTCAAGAAAAAAGTGTG
Found at i:15244255 original size:21 final size:20
Alignment explanation
Indices: 15244208--15244255 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
15244198 ACCCTAGGTG
**
15244208 GAAAAATTCAAGGGAAAAGT
1 GAAAAATTCAAGAAAAAAGT
*
15244228 GTGAAAATTCAAGAAAACAAGT
1 G-AAAAATTCAAGAAAA-AAGT
15244250 GAAAAA
1 GAAAAA
15244256 GGTAAGATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
20 1 0.05
21 16 0.73
22 5 0.23
ACGTcount: A:0.58, C:0.06, G:0.21, T:0.15
Consensus pattern (20 bp):
GAAAAATTCAAGAAAAAAGT
Found at i:15246810 original size:171 final size:170
Alignment explanation
Indices: 15246514--15255408 Score: 6948
Period size: 171 Copynumber: 51.9 Consensus size: 170
15246504 CAAGAAATGG
* * * * *
15246514 GAAGCGAAAGGCATCCATTGACAAGAAACGTCCATTTATAGTCATTCATGCCTTCAAAAGACTTG
1 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAG
* ** * *
15246579 TTACTCGCTTTTAATGGTTTTATAATCTTGCACATGATTTTAAGTTGAATTTTGTTTCATTTTTG
66 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG-ATTTTTTTTCATTTTTG
* * *
15246644 ATTAAAATAGATCATAATTGGATGTTTGCCTAGAGAAACAT
130 GTTAAAACAGATCATAATTGGATGTTTGCCTAGAGAAACGT
* * * * *
15246685 GAAGCGAAAGCCATCCATTGAGAAGGAAAGTCCTTTTATAGTCATTCATGCCCTCGAAAGACTAG
1 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAG
*
15246750 TTACAT-GCTTTAAATAGTTTTATAATCTTATAAATGATTTTAAGTTGATTTTGTTTTCA-TTTT
66 TTAC-TCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGATTTT-TTTTCATTTTT
* * *
15246813 GGATTAAAACAGATCATAA-TGGATATTTGTCTCGAGAAACGT
129 GG-TTAAAACAGATCATAATTGGATGTTTGCCTAGAGAAACGT
* * * * * *
15246855 GAAGCAAAAGCCATCCATTGAAAAGTAAAGTCTATTTATATTCACTCATGCCTTCGAAAGAATAG
1 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAG
* * * *
15246920 TTACTTGCTTTAAATGGTTTTATAATCTTGTAAATCATTTTAAGTTGA-TTTTTTTAATTTTTGG
66 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGATTTTTTTTCATTTTTGG
*
15246984 CTAAAATC-GATCATAATTGGATGTTTGCCTCA-AGAAACGT
131 TTAAAA-CAGATCATAATTGGATGTTTGCCT-AGAGAAACGT
* ** * * * *
15247024 GAAGCGAAAGGCATTTATTGACAAGAAAGGTTCAGTTATAGTCACTCATGCCTTCGAAAGACTCG
1 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAG
* * * *
15247089 TTACTCTCTTGAAATGGTTTTATAATCTTATCAATGATTTTAAGTTGA-ATTTTTTCATTTTTGG
66 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGATTTTTTTTCATTTTTGG
* * *
15247153 ATAAAACATATCATAATTGGTTGTTTGCCTCAG-GAAACGT
131 TTAAAACAGATCATAATTGGATGTTTGCCT-AGAGAAACGT
* * * **
15247193 GAAGCGAAAGCCATGCATTCACAAAAAAAGTATATTTATAGTCACTCATG-CTTCGAAAGACTAG
1 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAG
* * *
15247257 TTACTCACTTTGAATGGTTTTATAATCTTATAAATGATTTTAAGTTTAACATTTTTTTTCATTTT
66 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAG-TT--GATTTTTTTTCATTTT
* * * * * * * **
15247322 TGGCTAAAATAGATCATAATTGAAAGTTAGTCTTGAGAAACAC
128 TGGTTAAAACAGATCATAATTGGATGTTTGCCTAGAGAAACGT
* * * *
15247365 GAAGCAAAAGCCATCCATTGACCAA-AAAGGTCCACTTATAGT-AGCTCATGCCTTCGAAAAACT
1 GAAGCGAAAGCCATCCATTGA-CAAGAAAAGTCCATTTATAGTCA-CTCATGCCTTCGAAAGACT
* * * * *
15247428 TGTTACTCACTTTAAATGGTTTTATAATCTTATTAATGATTTTAATTTGAATTTTTTTCATTTTT
64 AGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGATTTTTTTTCATTTTT
* *
15247493 GATTAAAACAGATCATCAA-TGGATGTTTGCCTCA-AGAAACCT
129 GGTTAAAACAGATCAT-AATTGGATGTTTGCCT-AGAGAAACGT
* * * * *
15247535 GTAGCAAAAGCCATCCATTGA-AAGAAAAGATCCATTTATAGTCACTCATGCCTTTGAAAAACTT
1 GAAGCGAAAGCCATCCATTGACAAGAAAAG-TCCATTTATAGTCACTCATGCCTTCGAAAGACTA
* * *
15247599 GTTACTCGCTTTCAATGGTTTTATAATCTTATAAATGATTTTAAGTTTATTTTTTTTTCATTTCT
65 GTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGA-TTTTTTTTCATTTTT
* * * * * * *
15247664 AGTGAAAACATATCATAATTGGATGTTTGTCTAGGGAAGCAT
129 GGTTAAAACAGATCATAATTGGATGTTTGCCTAGAGAAACGT
* * * * ** * * *
15247706 GAAGCGAAAGTCATCAATCGAAAAGAAAAGTCCATTTATAGTCGTTCATGCCTTTGGAA-CCTTA
1 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGAC-TA
* * * *
15247770 GTTACTAGTTTTAAATGGTTTTATAATCTTTTAAATGATTTTAAGTGGATCTTTTTTTCATTTTT
65 GTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAT-TTTTTTTCATTTTT
* * * *
15247835 GGCTAAAACAAATCATAATTGGATGTTTGCCTAAAGAAACGA
129 GGTTAAAACAGATCATAATTGGATGTTTGCCTAGAGAAACGT
* * * * * * * * * *
15247877 GTAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTACAGTTAGTAATACCTTCAAAAGGCTTG
1 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAG
* * * *
15247942 TTACTTGCTTTAAATGGTTTTATAATATTGTAAATGATTTAAAGTTGATTTTTTTT-ATTTTTGG
66 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGATTTTTTTTCATTTTTGG
* *
15248006 TTAAAACATATCATAATTAGATGTTTGCC-ATGAGAAACGT
131 TTAAAACAGATCATAATTGGATGTTTGCCTA-GAGAAACGT
* * * * * *
15248046 GAAGTGAAAACCATCCATTAACAAGAAAGGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTAA
1 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAG
* * * *
15248111 TTACT-GACTTTAAATGGTTTTATAATCTTATAAATGATTTTTAGCTAATTTGTTTTTCATTTTA
66 TTACTCG-CTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGATTT-TTTTTCATTTTT
* * * *
15248175 GGATAAAACAGATCCTAATTTGATGTTTGCCTCA-AGAAATGT
129 GGTTAAAACAGATCATAATTGGATGTTTGCCT-AGAGAAACGT
* * ** * * * *
15248217 TAAGTGAAAGGTATCCATTGACAAGAAAGGCCCATTTATAGTCACTTATG-CTTCAAAAGACTAG
1 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAG
** * *
15248281 TTACTTTCTTTAAATAGTTTTATAATCTTATAAATAATTTTAAGTTGAATTTTTTTTCATTTTTG
66 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG-ATTTTTTTTCATTTTTG
* * *
15248346 GTTAAAACATATCATAATTGGATGTTTGCCTTGAGAAACGC
130 GTTAAAACAGATCATAATTGGATGTTTGCCTAGAGAAACGT
** * * * *
15248387 GAAGCGAAAATCATCTATTGACAAGAAAAGTCCATTTATAGTCAGTAATACCTTCGAAAGACTAG
1 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAG
** ** * ** ** *
15248452 TTACTTACAGTAAATGGTTTTATAAACTTATAGCTGATTTTAAGTTGAATTTTACATT-ATATTT
66 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG-ATTTT-TTTTCATTTTT
* * * * *
15248516 GGTTAAAACATATAACAATTGGATGTTTTCCTCA-AGAAATGT
129 GGTTAAAACAGATCATAATTGGATGTTTGCCT-AGAGAAACGT
* ** * * * **
15248558 GAAGCAAAAGCCATTTATCGACAAGGAAAGTCCATTTATAGTCACTTATGTGTTCGAAAGACTAG
1 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAG
* *
15248623 TTACTCGCTTTAAATGGTTTTATAATCTTGTAAATGATTTTAAGTTGAATTGTTTTTCATTTTTG
66 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG-ATTTTTTTTCATTTTTG
* ** * *
15248688 TTTAAAACAGATCATAATTGGATGTTTGTGTTAG-GAATCAT
130 GTTAAAACAGATCATAATTGGATGTTTG-CCTAGAGAAACGT
* * * **
15248729 GAAGCG-AAGCCATCCATTGACATGAAAAGTCCATTTATTGTCACTAATGCCTTTAAAAGA-TCA
1 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACT-A
* * * *
15248792 GTTACTCGCTTTAAATGGTTTTACAATTTTATCAATGATTTTAAGTTGATTTTTTTT-ATTTTTA
65 GTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGATTTTTTTTCATTTTTG
* * * * * * *
15248856 GTTAAAACAGATCATAATTTGATATTTTCATTGGGAAACGC
130 GTTAAAACAGATCATAATTGGATGTTTGCCTAGAGAAACGT
* * ** * * * * *
15248897 GAAGCGAAAGCCATCCGTTGGCTTGAAAAGTCCATTTATTGCCATTGATGCCTTTGAAAGACTTA
1 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGAC-TA
* * * * * *
15248962 -TTACAT-GCTTTAAACGGTTTTACAATCTTATCAATGATTTTGAGTTGAATTGTTTTCATTTTT
65 GTTAC-TCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGATTTTTTTTCATTTTT
* * * * * *
15249025 GGTTAAAAGATATGATAATTGGATGTTTTCCTCGAGAAACTT
129 GGTTAAAACAGATCATAATTGGATGTTTGCCTAGAGAAACGT
* * *
15249067 GAAGC-AAATGCCATCTATTTG-CAAGTAAAGTCCATTTATAGTCACTCATGCCTTCGAAGGACT
1 GAAGCGAAA-GCCATCCA-TTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACT
* * * * *
15249130 AGTTACTTGCTTTAAATGGTTTTATCATCTTGTAAATAATCTTAAGTTGA-TTTTTTTCATTTTT
64 AGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGATTTTTTTTCATTTTT
* * * * *
15249194 GGCTAAAATAGATCATAATTGGATGTTAGCCTCTGA-AAACAT
129 GGTTAAAACAGATCATAATTGGATGTTTGCCT-AGAGAAACGT
* * * * * * *
15249236 GAAACGCAAA-CCATCCCTTGACAAGAAAGGTCTATTTATAGTCAATAATGCCTTTGAAAGACTA
1 GAAGCG-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTA
* * * *
15249300 GTTACTCACGTTAAATGGTTTTATGATCTTATAAATGATTTTAAGTTGAATTATTTTTCATTTTT
65 GTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG-ATTTTTTTTCATTTTT
* * * * *
15249365 GGTTTATATAGATCATAATTGGATTTTTGCCTAGGGAAACGT
129 GGTTAAAACAGATCATAATTGGATGTTTGCCTAGAGAAACGT
* * ** *
15249407 GAAGCAAAAGCCATCCATTGACAAGCAAAA-TCCATTTATATTCACTCATGCCTTTAAAAGAATA
1 GAAGCGAAAGCCATCCATTGACAAG-AAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTA
* * *
15249471 GTTACTTGCTATAAATGGTTTTATAATCTTGTAAATGATTTTAAGTTGAATTTTTTTTCCATTTT
65 GTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG-ATTTTTTTT-CATTTT
* * *
15249536 TGGTTTAAACAAATCATAATTGGATGTTTGCCTTA-AGAAACAT
128 TGGTTAAAACAGATCATAATTGGATGTTTGCC-TAGAGAAACGT
* * * * * *
15249579 GAAGCGAAAGTCATCCATTGATAAG-AAAGTTCCATTTGTAGTCACTCATGCATTTGAAAGCCTA
1 GAAGCGAAAGCCATCCATTGACAAGAAAAG-TCCATTTATAGTCACTCATGCCTTCGAAAGACTA
* ** * * *
15249643 ATTACTCATTTTATATAGTTTTATAATCTTATAAATGATTTTAAGTTGAACGTTTTTTTCATTTT
65 GTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG-A-TTTTTTTTCATTTT
* * * ** *
15249708 TGGCTAAAACAAATCATAATTGGATGTTTGTCTCTAGCAACGT
128 TGGTTAAAACAGATCATAATTGGATGTTTGCCTAGAGAAACGT
* *
15249751 GAAGCGAAAGCCATCCATTGACAAGAAAGGTCCATTTATACTCACTCATGCCTTCGAAAGACTAG
1 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAG
* ** * * * *
15249816 TTACTCACTTTAAATACTTTTGTAATCTTATAGATAATTTTAAGTTGAATTTTTTT-ATTTTTGG
66 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGATTTTTTTTCATTTTTGG
* * *
15249880 TTAAAACAGATCATAA-TGTGATGTTTTCC-ACGAAAAACAT
131 TTAAAACAGATCATAATTG-GATGTTTGCCTA-GAGAAACGT
* * * *
15249920 GAAGCGAAAGCCATCCATTTG-CAAGAAAAATCCATTTATAGTC-CCCTATACCTTTGAAAGACT
1 GAAGCGAAAGCCATCCA-TTGACAAGAAAAGTCCATTTATAGTCACTC-ATGCCTTCGAAAGACT
* * * * *
15249983 AGTTACTCGCTTTAAATGTTTTTATAATCTTATAAATCATGTTAAGCTGAATTATTTTTCATTTT
64 AGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG-ATTTTTTTTCATTTT
* * * *
15250048 TGGTTAAAATC-GATCATAATTAGATGTTTGCCTTGAGATATGT
128 TGGTTAAAA-CAGATCATAATTGGATGTTTGCCTAGAGAAACGT
* * * * * * *
15250091 GAAGTGAAAGCCATCTATTAACAAGAAAGGTCCATTTATAATCACTCATGCCTTCTAAAGAATAG
1 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAG
* * * * ** *
15250156 TTACTCACTTGAAATGGATTTATAATCTTGTAAATGATTTTAAGAAGAATTGTTTTTCATTTTTG
66 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG-ATTTTTTTTCATTTTTG
* * * *
15250221 GCTAAAATAGATCATAATTGGATGTGTGCCTTAG-GAAACAT
130 GTTAAAACAGATCATAATTGGATGTTTGCC-TAGAGAAACGT
* * *** * *
15250262 GAAGC-ACAAACAATCCATTGACAAGAAAAGTCCATTTATAGTTGTTCATGCCTTCAAAAAACTA
1 GAAGCGA-AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTA
* * * * *
15250326 GTTACTCTCTTTATATGGATTTATAATCTTATAAATGATTTTATGTTGAATTTTTTTTCTTTTTT
65 GTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG-ATTTTTTTTCATTTTT
* * * * * **
15250391 GTTTAAAATAGATCATAATTGGATGTTTACATTTG-GAAAAAT
129 GGTTAAAACAGATCATAATTGGATGTTTGC-CTAGAGAAACGT
* * * * * * * * *
15250433 GAAGTGAAAACTATCAATTGACAAGAAAAGTCCATTTATAATCATTCATGCCTTTGAAAGCCTAA
1 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAG
* *
15250498 TTACTCACTTTAAATGGTTTTTTAATCTTATAAATGATTTTAAGTTGAACTTGTTTTTTCATTTT
66 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG-A-TT-TTTTTTCATTTT
* *
15250563 TGGCTAAAACAGATCATAATTGGATGTTAGCCTTAG-GAAACGT
128 TGGTTAAAACAGATCATAATTGGATGTTTGCC-TAGAGAAACGT
* * * * *
15250606 AAAGTGAAAGCCATCCATTGACAAGAAAAGTCCATTTATCA-TCACTCACGCCTTTGAAAGCCTA
1 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTAT-AGTCACTCATGCCTTCGAAAGACTA
* * * * * **
15250670 ATTACTCGCTTTAAGTGATTTTATAA-CTTTAAAAATGATTAT-AGATCAATTTTTTTTTTCATT
65 GTTACTCGCTTTAAATGGTTTTATAATC-TTATAAATGATTTTAAG-TTGA--TTTTTTTTCATT
* * * * * * *
15250733 TTTTGTTAAAACAGATCATAATTTGATCTTTTACATTGAGAAACAT
126 TTTGGTTAAAACAGATCATAATTGGAT-GTTTGCCTAGAGAAACGT
*** * * *
15250779 GAAATAAAAGCCATCAATTGACAAGAAAATTCCA-TTATAGTTACTCATGCCATT-GAAAG-CTT
1 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC-TTCGAAAGAC-T
** * * * * *
15250841 AGTTACTCGCTTTAGGTGATTTTATAA-CTTTAAAAATAATTTTAAATCGAATTTTTTTTCATTT
64 AGTTACTCGCTTTAAATGGTTTTATAATC-TTATAAATGATTTTAAGTTG-ATTTTTTTTCATTT
* * * * * * * * *
15250905 TTTG-TAAAACAAAACATCATTTGATGTTTGCTTTGGGAAACTT
127 TTGGTTAAAACAGATCATAATTGGATGTTTGCCTAGAGAAACGT
* * * * * * *
15250948 GAAGCGAAATCTATCAATTGACAACAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTAA
1 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAG
*** *
15251013 TTACTTATTTTAAATGGTTTTATAATCTTATAAATGATTTTAA-TTGAACTTTTTTTTAATTTTT
66 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG-A-TTTTTTTTCATTTTT
* * ** *
15251077 GGCTAAAACAGATCATACTTGGATGTTTGCCTCTAGAAACAT
129 GGTTAAAACAGATCATAATTGGATGTTTGCCTAGAGAAACGT
* * * * * *
15251119 GAAGCAAAAGCTATCCATTGATAAGAAATGTCCATTTATAGTCACTCATGCTTTAGAAAGACTAG
1 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAG
** *
15251184 TTACTCGCTTTAAATGCCTTTATAATCTTATAAATGATTTAAAGTTGATTTTTTTTTCATTTTTG
66 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGA-TTTTTTTTCATTTTTG
* * * ** *
15251249 GTTAAAACAAATCATAA-TGTGATTTTTTCCTTTAGAAATGT
130 GTTAAAACAGATCATAATTG-GATGTTTGCCTAGAGAAACGT
* * * * * *
15251290 GAAGTGAAAACCATCCATTTG-CAAGAAAAGTCTATTTATAGTCACTTATACCTTTGAAAGACTA
1 GAAGCGAAAGCCATCCA-TTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTA
* * **
15251354 GTTACTCGCTTGAAATGGTTTTATAATCTTATAAATCATTTTAAGCAGATTTTTTTTTCA-TTTT
65 GTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGA-TTTTTTTTCATTTTT
* * * * * * * *
15251418 GGTTAAAACAGTTGATAGTTAGATGTTTTCCTTGGGAAATGT
129 GGTTAAAACAGATCATAATTGGATGTTTGCCTAGAGAAACGT
* * * * *
15251460 GAAGTGAAAGCCATCTATTGACAAGAAAAGTCTATTTCTAGTCACTCATGTC-TCGGGAAATGTG
1 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC--GAAA---G
* ** * * * * **
15251524 AAACAAAATCCATC-CATTGAGAA-GAAAAGTCCATTTATAGTC--AGT-AATGCCTTCCAAAGT
61 --ACTAGTTAC-TCGC-TTTA-AATG----GT---TTTATAATCTTA-TAAATG-ATT-TTAAGT
* ** * ** * ** * * * * *
15251584 TTAGTTACTCACGTTAAATGATTTTATAATTTTATAAA-TGATTTTAAGTTGAAATTTTTTCATT
111 TGA-TT--T----TT-TTTCATTTT-T--GGTTA-AAACAGATCATAA-TTG-GATGTTTGCCTA
* *
15251648 GTTGGTTAAAAC-A
162 G--AG---AAACGT
* * * * * * ** *** * ** * ****
15251661 G-ATC-ATAATTG-GAT--GTTAGCCTCACGAAACGTGGAGCGAAAACCA-TCCATTGACAAAAA
1 GAAGCGA-AA--GCCATCCATT-G--ACAAGAAAAGTCCATTTATAGTCACT-CA-TGCCTTCGA
* * * * ** * ** * * * * * * * *
15251720 AAGTCCATTTA-TAGTCACT-CATGCCTTTAAAAGCCTAGTTACTCACTTTAAG-TAATTTTATA
58 AAGACTAGTTACTCG-CTTTAAATGGTTTTATAATCTTA-TAAATGATTTTAAGTTGATTTT-T-
* *** * ** *** ** ** * * * * *
15251782 ACTTTGA-AAATGGTTATAGATTGAAGTTTTTTTTATTTTTTG-TTAAAACAAATCAT
119 --TTTCATTTTTGGTTA-AAACAGATCATAATTGGA-TGTTTGCCT-AGAGAAA-CGT
** * ** * ** * * * * * * * **
15251838 -AATTTG--ATCTTTTGCATTGGGAA-ACAAG--AAATGAAAGCCA-TCAATTGAC-AAGAAA-A
1 GAA-GCGAAAGC-CATCCATTGACAAGAAAAGTCCATTTATAGTCACTC-A-TGCCTTCGAAAGA
* * ** * * * * * * **
15251894 TTTCT-TTTA-TAG--TTAATCATGCCTTCAAAAGCTTAGTTACTCACGTTAAG-TGATTTTATA
62 ---CTAGTTACTCGCTTTAA--ATGGTTTTATAATCTTA-TAAATGATTTTAAGTTGATTTT-T-
* ** ***** * * * * ** * ****
15251954 ACTTTAAAAATGATTTTTTTTCATTTTTTGTTCA-AATAGAACATCATTTGATGTTTGCTTTA-G
119 --TTT---CAT--TTTTGGTT-A-AAACAGATCATAATTG--GAT-GTTTG--CCTAGAGAAACG
15252017 -
170 T
* * * *
15252017 GAAACTTG-AAGCGAAATCCATCAATTAACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCGA
1 GAAGC--GAAAGC--CAT-C--C-ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGA
* * * *
15252081 AAGATTAGTTACTCTCTTTAAATGGATTTATAATCTTATAAATGATTTTAAGTTGAAATTTTTTT
58 AAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG-ATTTTTTTT
* * * * * *
15252146 CATTTTT-GCTAAAACATACCATAATTGGATGTTTGCATTGGGAAACGT
122 CATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTAGAGAAACGT
* * * * *
15252194 TAAGCAAAAGCCATCCATT-ACAAGAAAAGTCCATTTATAGTCACTGATGCCTTCAAAAAACTAG
1 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAG
* * * **
15252258 TTACTCGCTTTAAATAGTTTTATAACCTTATCAATGATTTTAAGTTGAATTTTTTTTCATTCCTG
66 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG-ATTTTTTTTCATTTTTG
* *
15252323 GTTAAAACAGATCATAATTGGATGTTAGCCTTAG-GAAATGT
130 GTTAAAACAGATCATAATTGGATGTTTGCC-TAGAGAAACGT
* * * * * * *
15252364 GAAGCAAAAGCCAACCATTGACAAGTAAAGTCCATTTATAATAACTTATGCCTTTGAAAGACTAG
1 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAG
* * * *
15252429 TTA----CTTTAAATAGTTTTATAATCTTGTAAATAATTTTAAGTTGATTTTTTTTCATTTTAGG
66 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGATTTTTTTTCATTTTTGG
* * * * * * * * *
15252490 CTACAACTGATCACAATTGAATGTTTACCTCGACAAACAT
131 TTAAAACAGATCATAATTGGATGTTTGCCTAGAGAAACGT
* * * * * * *
15252530 GAAGCAAAAGTCATCCATTAACAGGACAAGTCCATTTATAGTCACTCATGCCTTGGAAAGACTAA
1 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAG
* * * * *
15252595 TTACTTGCTTTAAATGATTTTATAGTCTCATAAATGATTTTAAGTTGAATTTTGTTTCATTTTTT
66 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG-ATTTTTTTTCA-TTTTT
** * *
15252660 TATTAAAATAGATCATAATTGGATGTTTGCCTCAG-GAAACAT
129 GGTTAAAACAGATCATAATTGGATGTTTGCCT-AGAGAAACGT
** * * *
15252702 GGGGCGAAAGCCATCCATTGTCAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAACACTAG
1 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAG
* * * * * * *
15252767 TTACTCACATTAAATGGTTTTATAATCTTGTAAATGATTTTATGCTGAATTGTTTTTCATTTTTT
66 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG-ATTTTTTTTCATTTTTG
* * * *
15252832 ATTAAAACAGATCATAATTGGATGTTTGCCTCTG-GAGACAT
130 GTTAAAACAGATCATAATTGGATGTTTGCCT-AGAGAAACGT
* * * * * *
15252873 GAAAG-GAAAGCCATCTAATGACAAAAAAAGTCTATTTATAGTCACTCATGCTTTCGAAAGAATA
1 G-AAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTA
* * ** * *
15252937 ATTACTAGCTGCAAGTGGTTTTATAATCTTATAAACGATTTTAAGTTGAATTTTTTTTCATTTTT
65 GTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG-ATTTTTTTTCA-TTTT
* *
15253002 TGG-TAAAACATATCATAATTGGATGTTTGCCTCA-AGAAACAT
128 TGGTTAAAACAGATCATAATTGGATGTTTGCCT-AGAGAAACGT
* * * * *
15253044 -AAGGCAAAAGCCATCCATTGACAATAAAA-TCTATTTATAGTCACTCATGGCTTCCAAAGACTA
1 GAA-GCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTA
* * * * *
15253107 GTTAATCCCTTTAAAGGGTTTTATAATCTTGA-AAATGATTTTAGGTTAAATTTGTTTTTCATTT
65 GTTACTCGCTTTAAATGGTTTTATAATCTT-ATAAATGATTTTAAGTT-GATTT-TTTTTCATTT
* * *
15253171 TTGGTTAAAACATATCATAATT-GCTCATTTGCCTCA-AGAAACGT
127 TTGGTTAAAACAGATCATAATTGGAT-GTTTGCCT-AGAGAAACGT
* * * *
15253215 GAAGC-AAATGTCATCCATTGACAAGAAAAGTCCATTTAGAGTCACTCATGCCTTTGAAATACTA
1 GAAGCGAAA-GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTA
* * * * * *
15253279 GTTACTCACTTTAAATAGTTTTATAATCTTATAACTGATTTTACGTTGAATGTTTTTTCATTTCT
65 GTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG-ATTTTTTTTCATTTTT
* * * *
15253344 AGTTAAAACATATCATAATTGGATGTTTACC-ATGTGAAACGT
129 GGTTAAAACAGATCATAATTGGATGTTTGCCTA-GAGAAACGT
* * *** * ** * *
15253386 GAAGC-AAACGCGATCTATTGACAAGAAAAGTCTGCTTATTGTCACTC-TTACTTTGAAATACTA
1 GAAGCGAAA-GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTA
* * * *
15253449 GTTACTCGCTTTAAATGGTTTTATAATCTTATAAATAATTATAAGTTGATTTTTTTTCATTTCTA
65 GTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGATTTTTTTTCATTTTTG
* * *
15253514 GTGAAAACATATCATAATTGGATGTTTGCCTTAG-GAACCGT
130 GTTAAAACAGATCATAATTGGATGTTTGCC-TAGAGAAACGT
* * * * * *
15253555 GAAGTGAAAGTCATCAATTGAAAAGAAAACTCCATTTATAGTCACTCATGCCTTCGAAA-CCTTA
1 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGAC-TA
* * * *
15253619 GTTATTGGTTTTAAATGGTTTTATAATCTTTTAAATGATTTTAAGTTGAATTTTTTTTCATTTTT
65 GTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG-ATTTTTTTTCATTTTT
* * * *
15253684 AGCTAAAACAGATCATAATTGGATGTTTGCCTAAAGAAACGA
129 GGTTAAAACAGATCATAATTGGATGTTTGCCTAGAGAAACGT
* * ** * * * ** * *
15253726 GAAGCAAAAGCCATCCATTGATAAGAAAAGTCCATTTGCAGTTAGTAACACCTTTGAAAGACTTG
1 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAG
* * *
15253791 TTACTTGCTTTAAATGGTTTTATAATCTTGTAAATGATTTAAAGTTGA-TTTTTTTCATTTTTGG
66 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGATTTTTTTTCATTTTTGG
* * *
15253855 TTAAAACATATCATAATTAGATGTTTACCTCA-AGAAACGT
131 TTAAAACAGATCATAATTGGATGTTTGCCT-AGAGAAACGT
** * * * * *
15253895 GAAGTTAAAACCATTCATTGACAAGAAAGGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTAA
1 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAG
* * *
15253960 TTACTAGCTTTAAATGATTTTATAATCTTATAAATGATTTTAAGTTAATTTTTTTTCATTTTTGG
66 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGATTTTTTTTCATTTTTGG
* * * * * *
15254025 CTAATACAAATCCTAATTGGATGTTTGCCTCA-AAAAATGT
131 TTAAAACAGATCATAATTGGATGTTTGCCT-AGAGAAACGT
* * * * * **
15254065 GAAGTGAAAGGCATCCATTGACAAG-AAAGGCTCATTTTTATTCACTCATG-CTTTAAAAGACTA
1 GAAGCGAAAGCCATCCATTGACAAGAAAAGTC-CATTTATAGTCACTCATGCCTTCGAAAGACTA
* * *
15254128 GTTACTTGCTTTAAATGGTTTTATAATC-T-T-AA-GA--TGAA----ATTTTTTTTCATTTTTA
65 GTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGATTTTTTTTCATTTTTG
* * *
15254183 GTTGAAACATATCATAATTGGATGTTTGCCTTGAGAAACGT
130 GTTAAAACAGATCATAATTGGATGTTTGCCTAGAGAAACGT
* * * * * * *
15254224 GAAGCGAAAACCATCCATTAACAAGAAAAGTCCATTTATAGTTAGTAATACCTTCAAAAGACTAG
1 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAG
* * * * **
15254289 TTACTCACGTTAAATGGTTTCATAATCTTATAATTGACTTTTAAGTTGAATTTTAGTTCATGTTT
66 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGA-TTTTAAGTTG-ATTTTTTTTCAT-TTT
* * *
15254354 T-GTTAAAACATATCATAATTGGATGTTTACCTCA-AGAAACAT
128 TGGTTAAAACAGATCATAATTGGATGTTTGCCT-AGAGAAACGT
* * * * * * * * *
15254396 GAAGCGAAAGCCATCTATCGACAAGGAGAGTTCATTTATAATCGCTTATGCCTTCGAAAGGCTAG
1 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAG
* * * *
15254461 TTACTTGATTTAAATGGTTTTATAATCTTGTAAATGATTTTAAGTTGAATTGTTTTTCATTTTTG
66 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG-ATTTTTTTTCATTTTTG
* * * * *
15254526 ATTAAAACAAATCATAATTGGATGTTTGCATTCG-GAATCGT
130 GTTAAAACAGATCATAATTGGATGTTTGC-CTAGAGAAACGT
* * * * *
15254567 GAAGCGAAAGCCATCCATTGACATGAAAAGTCTATTTATTGTCACTGATGCCTTTGAAAGACTAG
1 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAG
* * * * * * *
15254632 TTACTTGCTTTAAATGGTTTTACAATCTTATCAATGATTTTAAGTTTAGTTTTTTTAATTTTTTG
66 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGATTTTTTTTCATTTTTGG
* * * * *
15254697 TTAAAACAGATCATAATTTGATATTTGCATTGGGAAACGT
131 TTAAAACAGATCATAATTGGATGTTTGCCTAGAGAAACGT
* * * * * * * *
15254737 GAAGCGAAAGCCATCCATTGGCATGAAAAGTCTATTTATTGCCACTGATGCCTTTGAAAGAGTAG
1 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAG
* * * * * *
15254802 TTACACGCTTTAAATGGTTTTACAATCCTATCAATGATTTTAAGTTGAATTGTTTTCATTTTTGG
66 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGATTTTTTTTCATTTTTGG
* * * * *
15254867 TTTAAACATATCATAATTGAATGTTTTCCTTGAGAAACGT
131 TTAAAACAGATCATAATTGGATGTTTGCCTAGAGAAACGT
* * * * *
15254907 GAAGTGAATGCCATCCATTTG-CAAGCAAAGTCCATTTATAGTCACTCATGGCTT-TAAAGGACT
1 GAAGCGAAAGCCATCCA-TTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA-GACT
* * * *
15254970 AGTTACTCACTTTAAATGGTTTTATCATCTTATAAATAATCTTAAGTTGATTTTTTTTTCATTTT
64 AGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGA-TTTTTTTTCATTTT
* * *
15255035 TGGCTAAAA-AGATCATAATTGGATGTTAGCCTCAG-GAAATGT
128 TGGTTAAAACAGATCATAATTGGATGTTTGCCT-AGAGAAACGT
* * * *
15255077 GAAGCGAAAGCCATCTC-TTGACAAGAAAAGTCCACTTATAGTTAATAATGCCTTCGAAAGACTA
1 GAAGCGAAAGCCATC-CATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTA
* * * * * * *
15255141 GTTACTCACGTTAAATGGCTTTATGATCTTATAAATGATTTTAAATTGAATTGTTTTTCATTTGT
65 GTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG-ATTTTTTTTCATTTTT
* * * * *
15255206 GGTTAAGATAGATCATAATTGTATGTTTACCTAGAGAAATGT
129 GGTTAAAACAGATCATAATTGGATGTTTGCCTAGAGAAACGT
** * * * *
15255248 GAAGTAAAAGCCATCCATTGACAAGAAAAGTCCATTTATATTTACTCATGCCTTCAAAAGAATAG
1 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAG
* * * * * *
15255313 TTACTCGCTTTAATTAGTTTTATAATATTGTAAATAATTTTAAGTTGATTTTTTTTTCATTTTTT
66 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGA-TTTTTTTTCATTTTTG
* *
15255378 GTTAAAACAGATTATATTTGGATGTTTGCCT
130 GTTAAAACAGATCATAATTGGATGTTTGCCT
15255409 TAAAAAACTA
Statistics
Matches: 7021, Mismatches: 1403, Indels: 600
0.78 0.16 0.07
Matches are distributed among these distances:
159 81 0.01
160 41 0.01
161 1 0.00
162 1 0.00
163 4 0.00
164 2 0.00
165 4 0.00
166 100 0.01
167 42 0.01
168 124 0.02
169 1140 0.16
170 1614 0.23
171 2423 0.35
172 885 0.13
173 255 0.04
174 7 0.00
175 9 0.00
176 14 0.00
177 16 0.00
178 11 0.00
179 10 0.00
180 25 0.00
181 10 0.00
182 13 0.00
183 6 0.00
184 19 0.00
185 1 0.00
186 2 0.00
187 10 0.00
188 13 0.00
189 18 0.00
190 34 0.00
191 11 0.00
192 7 0.00
193 1 0.00
194 1 0.00
195 9 0.00
196 5 0.00
197 14 0.00
199 6 0.00
200 4 0.00
201 4 0.00
202 21 0.00
203 3 0.00
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.38
Consensus pattern (170 bp):
GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAG
TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGATTTTTTTTCATTTTTGG
TTAAAACAGATCATAATTGGATGTTTGCCTAGAGAAACGT
Found at i:15247448 original size:341 final size:340
Alignment explanation
Indices: 15246498--15266519 Score: 7711
Period size: 342 Copynumber: 57.9 Consensus size: 340
15246488 TCGTGACATG
* * * * * * *
15246498 TTGCCTCAAGAAATGGGAAGCGAAAGGCATCCATTGACAAGAAACGTCCATTTATAGTCATTCAT
1 TTGCCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCAT
** * * ** *
15246563 GCCTTCAAAAGACTTGTTACTCGCTTTTAATGGTTTTATAATCTTGCACATGATTTTAAGTTGAA
66 GCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA
* * * * * *
15246628 TTTTGTTTCATTTTTGATTAAAATAGATCATAATTGGATGTTTGCCTAGAGAAACATGAAGCGAA
131 TTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACGTGAAGCAAA
* * * * * * *
15246693 AGCCATCCATTGAGAAGGAAAGTCCTTTTATAGTCATTCATGCCCTCGAAAGACTAGTTACAT-G
196 AGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAAACTAGTTAC-TCA
* *
15246757 CTTTAAATAGTTTTATAATCTTATAAATGATTTTAAGTTGATTTTGTTTTCA-TTTTGGATTAAA
260 CTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGA-ATT-TTTTCATTTTTGG-TTAAA
*
15246821 ACAGATCATAA-TGGATAT
322 ACAGATCATAATTGGATGT
* * * * *
15246839 TTGTCTC-GAGAAACGTGAAGCAAAAGCCATCCATTGAAAAGTAAAGTCTATTTATATTCACTCA
1 TTGCCTCAG-GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCA
* * * * *
15246903 TGCCTTCGAAAGAATAGTTACTTGCTTTAAATGGTTTTATAATCTTGTAAATCATTTTAAGTTG-
65 TGCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGA
* * ** *
15246967 A-TTTTTTTAATTTTTGGCTAAAATC-GATCATAATTGGATGTTTGCCTCAAGAAACGTGAAGCG
130 ATTTTTTTTCATTTTTGGTTAAAA-CAGATCATAATTGGATGTTTGCCTTGAGAAACGTGAAGCA
* ** * * * * *
15247030 AAAGGCATTTATTGACAAGAAAGGTTCAGTTATAGTCACTCATGCCTTCGAAAGACTCGTTACTC
194 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAAACTAGTTACTC
* * * *
15247095 TCTTGAAATGGTTTTATAATCTTATCAATGATTTTAAGTTGAATTTTTTCATTTTTGGATAAAAC
259 ACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTCATTTTTGGTTAAAAC
* *
15247160 ATATCATAATTGGTTGT
324 AGATCATAATTGGATGT
* * * *
15247177 TTGCCTCAGGAAACGTGAAGCGAAAGCCATGCATTCACAAAAAAAGTATATTTATAGTCACTCAT
1 TTGCCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCAT
* * * *
15247242 G-CTTCGAAAGACTAGTTACTCACTTTGAATGGTTTTATAATCTTATAAATGATTTTAAGTTTAA
66 GCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAG-TTGA
* * * * * * **
15247306 CATTTTTTTTCATTTTTGGCTAAAATAGATCATAATTGAAAGTTAGTCTTGAGAAACACGAAGCA
130 -ATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACGTGAAGCA
* * *
15247371 AAAGCCATCCATTGACCAA-AAAGGTCCACTTATAGT-AGCTCATGCCTTCGAAAAACTTGTTAC
194 AAAGCCATCCATTGA-CAAGAAAAGTCCATTTATAGTCA-CTCATGCCTTCGAAAAACTAGTTAC
* * *
15247434 TCACTTTAAATGGTTTTATAATCTTATTAATGATTTTAATTTGAATTTTTTTCATTTTTGATTAA
257 TCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA-TTTTTTCATTTTTGGTTAA
15247499 AACAGATCATCAA-TGGATGT
321 AACAGATCAT-AATTGGATGT
* * * * *
15247519 TTGCCTCAAGAAACCTGTAGCAAAAGCCATCCATTGA-AAGAAAAGATCCATTTATAGTCACTCA
1 TTGCCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAG-TCTATTTATAGTCACTCA
* * * *
15247583 TGCCTTTGAAAAACTTGTTACTCGCTTTCAATGGTTTTATAATCTTATAAATGATTTTAAGTTTA
65 TGCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGA
* * * * * * * * * * *
15247648 TTTTTTTTTCATTTCTAGTGAAAACATATCATAATTGGATGTTTGTCTAGGGAAGCATGAAGCGA
130 ATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACGTGAAGCAA
* * * * ** * * *
15247713 AAGTCATCAATCGAAAAGAAAAGTCCATTTATAGTCGTTCATGCCTTTG-GAACCTTAGTTACT-
195 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAAAC-TAGTTACTC
* * * * *
15247776 AGTTTTAAATGGTTTTATAATCTTTTAAATGATTTTAAGTGGATCTTTTTTTCATTTTTGGCTAA
259 A-CTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGA--ATTTTTTCATTTTTGGTTAA
*
15247841 AACAAATCATAATTGGATGT
321 AACAGATCATAATTGGATGT
* * * * * * * * * *
15247861 TTGCCTAAAGAAACGAGTAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTACAGTTAGTAAT
1 TTGCCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCAT
* ** * * * * * *
15247926 ACCTTCAAAAGGCTTGTTACTTGCTTTAAATGGTTTTATAATATTGTAAATGATTTAAAGTTG-A
66 GCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA
* * * *
15247990 TTTTTTTT-ATTTTTGGTTAAAACATATCATAATTAGATGTTTGCCATGAGAAACGTGAAGTGAA
131 TTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACGTGAAG-CAA
* * ** * *
15248054 AA-CCATCCATTAACAAGAAAGGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTAATTACTGA
195 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAAACTAGTTACTCA
* * * *
15248118 CTTTAAATGGTTTTATAATCTTATAAATGATTTTTAGCT-AATTTGTTTTTCATTTTAGGATAAA
260 CTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA--T-TTTTTCATTTTTGGTTAAA
* *
15248182 ACAGATCCTAATTTGATGT
322 ACAGATCATAATTGGATGT
* * * * ** * * * *
15248201 TTGCCTCAAGAAATGTTAAGTGAAAGGTATCCATTGACAAGAAAGGCCCATTTATAGTCACTTAT
1 TTGCCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCAT
** ** * *
15248266 G-CTTCAAAAGACTAGTTACTTTCTTTAAATAGTTTTATAATCTTATAAATAATTTTAAGTTGAA
66 GCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA
* *
15248330 TTTTTTTTCATTTTTGGTTAAAACATATCATAATTGGATGTTTGCCTTGAGAAACGCGAAGCGAA
131 TTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACGTGAAGC-AA
* * * * * * *
15248395 AA-TCATCTATTGACAAGAAAAGTCCATTTATAGTCAGTAATACCTTCGAAAGACTAGTTACTTA
195 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAAACTAGTTACTCA
** * ** *
15248459 CAGTAAATGGTTTTATAAACTTATAGCTGATTTTAAGTTGAATTTTACATT-ATATTTGGTTAAA
260 CTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTT---TTCATTTTTGGTTAAA
* * *
15248523 ACATATAACAATTGGATGT
322 ACAGATCATAATTGGATGT
* * * * ** * * * *
15248542 TTTCCTCAAGAAATGTGAAGCAAAAGCCATTTATCGACAAGGAAAGTCCATTTATAGTCACTTAT
1 TTGCCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCAT
** * *
15248607 GTGTTCGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTGTAAATGATTTTAAGTTGAA
66 GCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA
* * ** * * *
15248672 TTGTTTTTCATTTTTGTTTAAAACAGATCATAATTGGATGTTTGTGTT-AGGAATCATGAAGC-G
131 TTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTGA-GAAACGTGAAGCAA
* * * *
15248735 AAGCCATCCATTGACATGAAAAGTCCATTTATTGTCACTAATGCCTT-TAAAAGA-TCAGTTACT
195 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAA-ACT-AGTTACT
* * * * * * *
15248798 CGCTTTAAATGGTTTTACAATTTTATCAATGATTTTAAGTTGATTTTTTTTATTTTTAGTTAAAA
258 CACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTCATTTTTGGTTAAAA
* *
15248863 CAGATCATAATTTGATAT
323 CAGATCATAATTGGATGT
* * ** * * * ** * * * * *
15248881 TTTCATTGGGAAACGCGAAGCGAAAGCCATCCGTTGGCTTGAAAAGTCCATTTATTGCCATTGAT
1 TTGCCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCAT
* * * *
15248946 GCCTTTGAAAGACTTA-TTACAT-GCTTTAAACGGTTTTACAATCTTATCAATGATTTTGAGTTG
66 GCCTTTGAAAGAC-TAGTTAC-TCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG
* * * * * * *
15249009 AA-TTGTTTTCATTTTTGGTTAAAAGATATGATAATTGGATGTTTTCCTCGAGAAACTTGAAGCA
129 AATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACGTGAAGCA
* * * **
15249073 AATGCCATCTATTTG-CAAGTAAAGTCCATTTATAGTCACTCATGCCTTCGAAGGACTAGTTACT
194 AAAGCCATCCA-TTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAAACTAGTTACT
** * * * * * *
15249137 TGCTTTAAATGGTTTTATCATCTTGTAAATAATCTTAAGTTGATTTTTTTCATTTTTGGCTAAAA
258 CACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTCATTTTTGGTTAAAA
*
15249202 TAGATCATAATTGGATGT
323 CAGATCATAATTGGATGT
* * * * * * * * *
15249220 TAGCCTCTGAAAACATGAAACGCAAA-CCATCCCTTGACAAGAAAGGTCTATTTATAGTCAATAA
1 TTGCCTCAGGAAACGTGAAGCG-AAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCA
* * *
15249284 TGCCTTTGAAAGACTAGTTACTCACGTTAAATGGTTTTATGATCTTATAAATGATTTTAAGTTGA
65 TGCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGA
* * * * * * *
15249349 ATTATTTTTCATTTTTGGTTTATATAGATCATAATTGGATTTTTGCCTAGGGAAACGTGAAGCAA
130 ATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACGTGAAGCAA
* * *
15249414 AAGCCATCCATTGACAAGCAAAA-TCCATTTATATTCACTCATGCCTT-TAAAAGAATAGTTACT
195 AAGCCATCCATTGACAAG-AAAAGTCCATTTATAGTCACTCATGCCTTCGAAAA-ACTAGTTACT
** * * *
15249477 TGCTATAAATGGTTTTATAATCTTGTAAATGATTTTAAGTTGAATTTTTTTTCCATTTTTGGTTT
258 CACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA--TTTTTT-CATTTTTGGTTA
*
15249542 AAACAAATCATAATTGGATGT
320 AAACAGATCATAATTGGATGT
* * * * * * *
15249563 TTGCCTTAAGAAACATGAAGCGAAAGTCATCCATTGATAAG-AAAGTTCCATTTGTAGTCACTCA
1 TTGCCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAG-TCTATTTATAGTCACTCA
* * * ** * *
15249627 TGCATTTGAAAGCCTAATTACTCATTTTATATAGTTTTATAATCTTATAAATGATTTTAAGTTGA
65 TGCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGA
* * * * *
15249692 ACGTTTTTTTCATTTTTGGCTAAAACAAATCATAATTGGATGTTTGTCTCT-AGCAACGTGAAGC
130 A-TTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCT-TGAGAAACGTGAAGC
* * * *
15249756 GAAAGCCATCCATTGACAAGAAAGGTCCATTTATACTCACTCATGCCTTCGAAAGACTAGTTACT
193 AAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAAACTAGTTACT
** * * * *
15249821 CACTTTAAATACTTTTGTAATCTTATAGATAATTTTAAGTTGAATTTTTTTATTTTTGGTTAAAA
258 CACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTCATTTTTGGTTAAAA
15249886 CAGATCATAA-TGTGATGT
323 CAGATCATAATTG-GATGT
* * * * * * *
15249904 TTTCCAC-GAAAAACATGAAGCGAAAGCCATCCATTTG-CAAGAAAAATCCATTTATAGTC-CCC
1 TTGCCTCAG-GAAACGTGAAGCGAAAGCCATCCA-TTGACAAGAAAAGTCTATTTATAGTCACTC
* * * * *
15249966 TATACCTTTGAAAGACTAGTTACTCGCTTTAAATGTTTTTATAATCTTATAAATCATGTTAAGCT
64 -ATGCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTT
* * * *
15250031 GAATTATTTTTCATTTTTGGTTAAAATC-GATCATAATTAGATGTTTGCCTTGAGATATGTGAAG
128 GAATTTTTTTTCATTTTTGGTTAAAA-CAGATCATAATTGGATGTTTGCCTTGAGAAACGTGAAG
** * * * * *
15250095 TGAAAGCCATCTATTAACAAGAAAGGTCCATTTATAATCACTCATGCCTTCTAAAGAA-TAGTTA
192 CAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA-AACTAGTTA
* * * ** *
15250159 CTCACTTGAAATGGATTTATAATCTTGTAAATGATTTTAAGAAGAATTGTTTTTCATTTTTGGCT
256 CTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA-T-TTTTTCATTTTTGGTT
*
15250224 AAAATAGATCATAATTGGATGT
319 AAAACAGATCATAATTGGATGT
* * * * * * ***
15250246 GTGCCTTAGGAAACATGAAGC-ACAAACAATCCATTGACAAGAAAAGTCCATTTATAGTTGTTCA
1 TTGCCTCAGGAAACGTGAAGCGA-AAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCA
** * * * * *
15250310 TGCCTTCAAAAAACTAGTTACTCTCTTTATATGGATTTATAATCTTATAAATGATTTTATGTTGA
65 TGCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGA
* * * * * ** *
15250375 ATTTTTTTTCTTTTTTGTTTAAAATAGATCATAATTGGATGTTTACATTTG-GAAAAATGAAGTG
130 ATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGC-CTTGAGAAACGTGAAG-C
* * * * * ** *
15250439 AAAA-CTATCAATTGACAAGAAAAGTCCATTTATAATCATTCATGCCTTTGAAAGCCTAATTACT
193 AAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAAACTAGTTACT
* *
15250503 CACTTTAAATGGTTTTTTAATCTTATAAATGATTTTAAGTTGAACTTGTTTTTTCATTTTTGGCT
258 CACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA----TTTTTTCATTTTTGGTT
15250568 AAAACAGATCATAATTGGATGT
319 AAAACAGATCATAATTGGATGT
* * * * *
15250590 TAGCCTTAGGAAACGTAAAGTGAAAGCCATCCATTGACAAGAAAAGTCCATTTATCA-TCACTCA
1 TTGCCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTAT-AGTCACTCA
* * * * * * * * *
15250654 CGCCTTTGAAAGCCTAATTACTCGCTTTAAGTGATTTTATAA-CTTTAAAAATGATTAT-AGATC
65 TGCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATC-TTATAAATGATTTTAAGTTG
* * * * * *
15250717 AATTTTTTTTTTCATTTTTTGTTAAAACAGATCATAATTTGATCTTTTACATTGAGAAACATGAA
129 AA--TTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGAT-GTTTGCCTTGAGAAACGTGAA
** * * * *
15250782 ATAAAAGCCATCAATTGACAAGAAAATTCCA-TTATAGTTACTCATGCCATT-G-AAAGCTTAGT
191 GCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC-TTCGAAAAAC-TAGT
* ** * * * * * *
15250844 TACTCGCTTTAGGTGATTTTATAA-CTTTAAAAATAATTTTAAATCGAATTTTTTTTCATTTTTT
254 TACTCACTTTAAATGGTTTTATAATC-TTATAAATGATTTTAAGTTGAA--TTTTTTCATTTTTG
* * * *
15250908 G-TAAAACAAAACATCATTTGATGT
316 GTTAAAACAGATCATAATTGGATGT
* ** * * * * * *
15250932 TTGCTTTGGGAAACTTGAAGCGAAATCTATCAATTGACAACAAAAGTCCATTTATAGTCACTCAT
1 TTGCCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCAT
* * ***
15250997 GCCTTTGAAAGCCTAATTACTTATTTTAAATGGTTTTATAATCTTATAAATGATTTTAA-TTGAA
66 GCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA
* * * *
15251061 CTTTTTTTTAATTTTTGGCTAAAACAGATCATACTTGGATGTTTGCCTCT-AGAAACATGAAGCA
131 -TTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCT-TGAGAAACGTGAAGCA
* * * * * *
15251125 AAAGCTATCCATTGATAAGAAATGTCCATTTATAGTCACTCATGCTTTAGAAAGACTAGTTACTC
194 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAAACTAGTTACTC
* ** * *
15251190 GCTTTAAATGCCTTTATAATCTTATAAATGATTTAAAGTTGATTTTTTTTTCATTTTTGGTTAAA
259 ACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGA--ATTTTTTCATTTTTGGTTAAA
* *
15251255 ACAAATCATAA-TGTGATTT
322 ACAGATCATAATTG-GATGT
* * * * * *
15251274 TTTCCTTTA-GAAATGTGAAGTGAAAACCATCCATTTG-CAAGAAAAGTCTATTTATAGTCACTT
1 TTGCC-TCAGGAAACGTGAAGCGAAAGCCATCCA-TTGACAAGAAAAGTCTATTTATAGTCACTC
* * * **
15251337 ATACCTTTGAAAGACTAGTTACTCGCTTGAAATGGTTTTATAATCTTATAAATCATTTTAAGCAG
64 ATGCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG
* * * * * * * * **
15251402 ATTTTTTTTTCA-TTTTGGTTAAAACAGTTGATAGTTAGATGTTTTCCTTGGGAAATGTGAAGTG
129 AATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACGTGAAGCA
* * * * *
15251466 AAAGCCATCTATTGACAAGAAAAGTCTATTTCTAGTCACTCATGTC-TCGGGAAATGTGAAACAA
194 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC--G-AA----AAACTA
** * * ** *
15251530 AATCCATC-CATTGAGAA-GAAAAGTCCATTTATAGTCAGTAATGCCTTCCAAA-GTTTAGTTAC
252 GTTAC-TCAC-TTTA-AATG----G-----TT-T--T-A-TAAT--CTTATAAATGATT--TTA-
* * ** * ** * *
15251592 TCACGTTAAATGATTTT-ATAATT--TTATAAA-TGATTTTAAGTTGAAATTT
295 --A-GTTGAAT-TTTTTCATTTTTGGTTA-AAACAGATCATAA-TTG-GATGT
* * ** * ** * * ** * * * ** *** *
15251641 TTTCATTGTTGGTTAAAACAGATCATAATTGGATGTTAGCC--T--CACGAAACGTGGAGCGAAA
1 TTGC-CT-CAGG---AAAC-G-T--GAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATA
** * **** * * * * ** * ** * * * * * *
15251702 ACCA-TCCATTGACAAAAAAAGTCCATTTA-TAGTCACT-CATGCCTTTAAAAGCCTAGTTACTC
57 GTCACT-CA-TGCCTTTGAAAGACTAGTTACTCG-CTTTAAATGGTTTTATAATCTTA-TAAATG
* * *** * ** *** ** ** *
15251764 ACTTTAAG-T-AATTTTATAACTTTGA-AAATGGTTATAGATTGAAGTTTTTTTTATTTTTTG--
118 ATTTTAAGTTGAATTTT-T---TTTCATTTTTGGTTA-AAACAGATCATAATTGGA-TGTTTGCC
* * * ** *
15251824 TT-A-AAAC--AAATCATAATTTGATCTTTTGCATTGGGAAACAAGAAATGAAAGCCATCAATTG
177 TTGAGAAACGTGAAGCA-AA----AGC-CATCCATT--G--ACAAG--A--AAAG---TC-----
* * * * * *
15251885 ACAAGAAAATTTCTTTTATAGTTAATCATGCCTTC-AAAAGCTTAGTTACTCACGTTAAGTGATT
220 -C------A-----TTTATAGTCACTCATGCCTTCGAAAAAC-TAGTTACTCACTTTAAATGGTT
* * * * * * * *
15251949 TTATAA-CTT-TAAA--A--ATGA-TT---TTTTTTCATTTTTTGTTCAAATAGAACATCATTTG
272 TTATAATCTTATAAATGATTTTAAGTTGAATTTTTTCATTTTTGGTTAAAACAGATCATAATTGG
15252004 ATGT
337 ATGT
* * * * * *
15252008 TTGCTTTAGGAAACTTGAAGCGAAATCCATCAATTAACAAGAAAAGTCTATTTATAGTCACTCAT
1 TTGCCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCAT
* * * *
15252073 GCCTTCGAAAGATTAGTTACTCTCTTTAAATGGATTTATAATCTTATAAATGATTTTAAGTTGAA
66 GCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA
* * * * * * *
15252138 ATTTTTTTCATTTTT-GCTAAAACATACCATAATTGGATGTTTGCATTGGGAAACGTTAAGCAAA
131 TTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACGTGAAGCAAA
* * *
15252202 AGCCATCCATT-ACAAGAAAAGTCCATTTATAGTCACTGATGCCTTCAAAAAACTAGTTACTCGC
196 AGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAAACTAGTTACTCAC
* * * **
15252266 TTTAAATAGTTTTATAACCTTATCAATGATTTTAAGTTGAATTTTTTTTCATTCCTGGTTAAAAC
261 TTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA--TTTTTTCATTTTTGGTTAAAAC
15252331 AGATCATAATTGGATGT
324 AGATCATAATTGGATGT
* * * * * * * * * *
15252348 TAGCCTTAGGAAATGTGAAGCAAAAGCCAACCATTGACAAGTAAAGTCCATTTATAATAACTTAT
1 TTGCCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCAT
* * *
15252413 GCCTTTGAAAGACTAGTTA----CTTTAAATAGTTTTATAATCTTGTAAATAATTTTAAGTTG-A
66 GCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA
* * * * * * * * * *
15252473 TTTTTTTTCATTTTAGGCTACAACTGATCACAATTGAATGTTTACCTCGACAAACATGAAGCAAA
131 TTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACGTGAAGCAAA
* * * * * * * **
15252538 AGTCATCCATTAACAGGACAAGTCCATTTATAGTCACTCATGCCTTGGAAAGACTAATTACTTGC
196 AGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAAACTAGTTACTCAC
* * * **
15252603 TTTAAATGATTTTATAGTCTCATAAATGATTTTAAGTTGAATTTTGTTTCATTTTTTTATTAAAA
261 TTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA-TTT-TTTCA-TTTTTGGTTAAAA
*
15252668 TAGATCATAATTGGATGT
323 CAGATCATAATTGGATGT
* ** *
15252686 TTGCCTCAGGAAACATGGGGCGAAAGCCATCCATTGTCAAGAAAAGT-TCATTTATAGTCACTCA
1 TTGCCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCT-ATTTATAGTCACTCA
* * * * * * *
15252750 TGCCTTCGAAACACTAGTTACTCACATTAAATGGTTTTATAATCTTGTAAATGATTTTATGCTGA
65 TGCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGA
* ** * *
15252815 ATTGTTTTTCATTTTTTATTAAAACAGATCATAATTGGATGTTTGCCTCTG-GAGACATGAAAG-
130 ATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCT-TGAGAAACGTG-AAGC
* * * * * * *
15252878 GAAAGCCATCTAATGACAAAAAAAGTCTATTTATAGTCACTCATGCTTTCGAAAGAA-TAATTAC
193 AAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA-AACTAGTTAC
** * *
15252942 T-AGCTGCAAGTGGTTTTATAATCTTATAAACGATTTTAAGTTGAATTTTTTTTCATTTTTTGG-
257 TCA-CTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA--TTTTTTCA-TTTTTGGT
*
15253005 TAAAACATATCATAATTGGATGT
318 TAAAACAGATCATAATTGGATGT
* * * *
15253028 TTGCCTCAAGAAACAT-AAGGCAAAAGCCATCCATTGACAATAAAA-TCTATTTATAGTCACTCA
1 TTGCCTCAGGAAACGTGAA-GCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCA
* ** * * * * *
15253091 TGGCTTCCAAAGACTAGTTAATCCCTTTAAAGGGTTTTATAATCTTGA-AAATGATTTTAGGTTA
65 TGCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTT-ATAAATGATTTTAAGTTG
* * * **
15253155 AATTTGTTTTTCATTTTTGGTTAAAACATATCATAATT-GCTCATTTGCCTCAAGAAACGTGAAG
129 AATTT-TTTTTCATTTTTGGTTAAAACAGATCATAATTGGAT-GTTTGCCTTGAGAAACGTGAAG
* * * * *
15253219 CAAATGTCATCCATTGACAAGAAAAGTCCATTTAGAGTCACTCATGCCTTTGAAATACTAGTTAC
192 CAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAAACTAGTTAC
* * * * *
15253284 TCACTTTAAATAGTTTTATAATCTTATAACTGATTTTACGTTGAATGTTTTTTCATTTCTAGTTA
257 TCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA--TTTTTTCATTTTTGGTTA
*
15253349 AAACATATCATAATTGGATGT
320 AAACAGATCATAATTGGATGT
* * * ** *
15253370 TT-AC-CATGTGAAACGTGAAGC-AAACGCGATCTATTGACAAGAAAAGTCTGCTTATTGTCACT
1 TTGCCTCA-G-GAAACGTGAAGCGAAA-GCCATCCATTGACAAGAAAAGTCTATTTATAGTCACT
** * * *
15253432 C-TTACTTTGAAATACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATAATTATAAGTT
63 CATGCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTT
* * * * *
15253496 G-ATTTTTTTTCATTTCTAGTGAAAACATATCATAATTGGATGTTTGCCTT-AGGAACCGTGAAG
128 GAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTGA-GAAACGTGAAG
** * * * * *
15253559 TGAAAGTCATCAATTGAAAAGAAAACTCCATTTATAGTCACTCATGCCTTCG-AAACCTTAGTTA
192 CAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAAAC-TAGTTA
* *** * * *
15253623 TTGGTTTTAAATGGTTTTATAATCTTTTAAATGATTTTAAGTTGAATTTTTTTTCATTTTTAGCT
256 CTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA--TTTTTTCATTTTTGGTT
15253688 AAAACAGATCATAATTGGATGT
319 AAAACAGATCATAATTGGATGT
* * * * * * ** * * * *
15253710 TTGCCTAAAGAAACGAGAAGCAAAAGCCATCCATTGATAAGAAAAGTCCATTTGCAGTTAGTAAC
1 TTGCCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCAT
* * * * *
15253775 ACCTTTGAAAGACTTGTTACTTGCTTTAAATGGTTTTATAATCTTGTAAATGATTTAAAGTTG-A
66 GCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA
* * * ** *
15253839 -TTTTTTTCATTTTTGGTTAAAACATATCATAATTAGATGTTTACCTCAAGAAACGTGAAGTTAA
131 TTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACGTGAAG-CAA
* * ** *
15253903 AA-CCATTCATTGACAAGAAAGGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTAATTACT-A
195 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAAACTAGTTACTCA
* * *
15253966 GCTTTAAATGATTTTATAATCTTATAAATGATTTTAAGTT-AATTTTTTTTCATTTTTGGCTAAT
260 -CTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA--TTTTTTCATTTTTGGTTAAA
* *
15254030 ACAAATCCTAATTGGATGT
322 ACAGATCATAATTGGATGT
** * * * * * *
15254049 TTGCCTCAAAAAATGTGAAGTGAAAGGCATCCATTGACAAG-AAAGGCTCATTTTTATTCACTCA
1 TTGCCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCT-ATTTATAGTCACTCA
* * *
15254113 TG-CTTTAAAAGACTAGTTACTTGCTTTAAATGGTTTTATAATC-T-T-AA-GA---T--G--AA
65 TGCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGA
* * *
15254166 ATTTTTTTTCATTTTTAGTTGAAACATATCATAATTGGATGTTTGCCTTGAGAAACGTGAAGCGA
130 ATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACGTGAAGC-A
* * * * *
15254231 AAA-CCATCCATTAACAAGAAAAGTCCATTTATAGTTAGTAATACCTTC-AAAAGACTAGTTACT
194 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAA-ACTAGTTACT
* * *
15254294 CACGTTAAATGGTTTCATAATCTTATAATTGACTTTTAAGTTGAATTTTAGTTCATGTTTT-GTT
258 CACTTTAAATGGTTTTATAATCTTATAAATGA-TTTTAAGTTGAATTTT--TTCAT-TTTTGGTT
*
15254358 AAAACATATCATAATTGGATGT
319 AAAACAGATCATAATTGGATGT
* * * * * * * * * *
15254380 TTACCTCAAGAAACATGAAGCGAAAGCCATCTATCGACAAGGAGAGT-TCATTTATAATCGCTTA
1 TTGCCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCT-ATTTATAGTCACTCA
* * * * *
15254444 TGCCTTCGAAAGGCTAGTTACTTGATTTAAATGGTTTTATAATCTTGTAAATGATTTTAAGTTGA
65 TGCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGA
* * * * * *
15254509 ATTGTTTTTCATTTTTGATTAAAACAAATCATAATTGGATGTTTGCATTCG-GAATCGTGAAGCG
130 ATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTT-GAGAAACGTGAAGCA
* * * * * * *
15254573 AAAGCCATCCATTGACATGAAAAGTCTATTTATTGTCACTGATGCCTTTGAAAGACTAGTTACTT
194 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAAACTAGTTACTC
* * * * * * *
15254638 GCTTTAAATGGTTTTACAATCTTATCAATGATTTTAAGTTTAGTTTTTTTAATTTTTTGTTAAAA
259 ACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGA-ATTTTTTCATTTTTGGTTAAAA
* *
15254703 CAGATCATAATTTGATAT
323 CAGATCATAATTGGATGT
* ** * * * * *
15254721 TTGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGGCATGAAAAGTCTATTTATTGCCACTGAT
1 TTGCCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCAT
* * * * *
15254786 GCCTTTGAAAGAGTAGTTACACGCTTTAAATGGTTTTACAATCCTATCAATGATTTTAAGTTGAA
66 GCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA
* * * * * **
15254851 -TTGTTTTCATTTTTGGTTTAAACATATCATAATTGAATGTTTTCCTTGAGAAACGTGAAGTGAA
131 TTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACGTGAAGCAAA
* * * * *
15254915 TGCCATCCATTTG-CAAGCAAAGTCCATTTATAGTCACTCATGGCTT-TAAAGGACTAGTTACTC
196 AGCCATCCA-TTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA-AACTAGTTACTC
* * * * *
15254978 ACTTTAAATGGTTTTATCATCTTATAAATAATCTTAAGTTGATTTTTTTTTCATTTTTGGCTAAA
259 ACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGA--ATTTTTTCATTTTTGGTTAAA
15255043 A-AGATCATAATTGGATGT
322 ACAGATCATAATTGGATGT
* * * * * * *
15255061 TAGCCTCAGGAAATGTGAAGCGAAAGCCATCTC-TTGACAAGAAAAGTCCACTTATAGTTAATAA
1 TTGCCTCAGGAAACGTGAAGCGAAAGCCATC-CATTGACAAGAAAAGTCTATTTATAGTCACTCA
* * * * * *
15255125 TGCCTTCGAAAGACTAGTTACTCACGTTAAATGGCTTTATGATCTTATAAATGATTTTAAATTGA
65 TGCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGA
* * * * * * * * *
15255190 ATTGTTTTTCATTTGTGGTTAAGATAGATCATAATTGTATGTTTACCTAGAGAAATGTGAAGTAA
130 ATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACGTGAAGCAA
* * *
15255255 AAGCCATCCATTGACAAGAAAAGTCCATTTATATTTACTCATGCCTTC-AAAAGAATAGTTACTC
195 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAA-ACTAGTTACTC
* * * * * * * *
15255319 GCTTTAATTAGTTTTATAATATTGTAAATAATTTTAAGTTGATTTTTTTTTCATTTTTTGTTAAA
259 ACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGA--ATTTTTTCATTTTTGGTTAAA
* *
15255384 ACAGATTATATTTGGATGT
322 ACAGATCATAATTGGATGT
* ** * * * * * * * * ** * * **
15255403 TTGCCTTAAAAAACTATCACGACTCAAATTTCAAGCCA-TGATC-GGCACATGGGCCCAATGGAC
1 TTGCCTCAGGAAAC-GTGAAG-C-GAAA--GCCATCCATTGA-CAAG-A-A-AAG-TCTAT--TT
* * ** * * * * * ** * *
15255466 ATAGCCCACT-AAGCGC-AAGCAAGCCTA-TT--T--ATATAACCT-G-TCCATCAT-TCCATCA
54 ATAG-TCACTCATGC-CTTTGAAAGACTAGTTACTCGCTTTAA-ATGGTTTTATAATCT-TAT-A
* * ** * *** * *
15255521 TAA-G-TTATTAAGGTCACA--TTTCAT-AATTTCAATTCAAAATA-ATGC-TAACCATTGCCAT
114 -AATGATT-TTAAGTTGA-ATTTTTTTTCATTTTTGGTT-AAAACAGAT-CAT-A--ATTG-GAT
* * *** ** * * ** * **
15255579 -CTCGTAGTG-GCATTTC-CG-ATCAAATATACATACATT-ATCTAA-AACATA-TATATCTTAA
170 GTTTGCCTTGAG-A-AACGTGAAGCAAA-AGCCATCCATTGA-C-AAGAA-A-AGTCCAT-TT-A
* * ** ** * * ** * *** * *
15255637 TAATTTACATCGGGTTTGTCTATACACAACAATAAGGGATACTCGACTTCCAA-CG-AAGAGACT
226 T-AGTCAC-TCATGCCT-TCGA-A-A-AAC--T-A--GTTACTC-ACTTTAAATGGTTTTATAAT
* * * * *** ** *** *** * *
15255700 CGGT-GAAA-G--TTCAACTATTGAATGCCTAGATACCT-ACCAAGAAAACGAATC-TACA-AGG
279 C-TTATAAATGATTTTAA--GTTGAATTTTTTCATTTTTGGTTAA-AACA-G-ATCATA-ATTGG
***
15255758 ACACC
337 A-TGT
* ** * * * * ** ** * *** * ****
15255763 TCGACCT-AGTTACCGGCTGCCTCCTGATCTAAAAACATGAAGTTGAAAACGGTGAGTATAAACC
1 TTG-CCTCAGGAAAC-G-TG------AAGCGAAAGCCATCCA-TTGACAA-GAAAAGTCTATTTA
* * * * * **** ** * * ** * * * * *
15255827 CAGTGAGTGA-ACAAAGGAGGGAACAAG-CAAACG-ATAAGGAAT-GTTTAAAGAAATCATGATG
55 TAGTCACTCATGCCTTTGAAAG-ACTAGTTACTCGCTTTA--AATGGTTT-TA-TAATC-TTAT-
* * * * * ** ** * * *** * *
15255888 TACTTATTTCAAAAACGATGCAATTTAGTTTGGTTCTT-ATTAAAACCCCTTATTAAACCGTT-A
113 AAATGATTT---TAA-GTTG-AATTTTTTTTCATTTTTGGTTAAAACAGATCA-T-AA---TTGG
* * * * * *** *
15255951 ATGAGTTAATCCCTTGATGATGAAAGATCCATA-CATAA-CAAAGAATTTGAAGAATG-AAAG--
168 AT--GTT--TGCCTTGA-GA--AACG-T-GA-AGCAAAAGCCATCCA-TTG-ACAA-GAAAAGTC
* * * ** * * * * **
15256011 C-TTTAGTAAT-ATTCAAGCAAGTCAAATGAAACGACGCGTCCTCACTATAGTGAGAATGAATTT
220 CATTTA-TAGTCACTCATGC-CTTCGAA--AAACTA-G-TTACTCACT-T--T-A-AATGGTTTT
** * * * ** * * * * ** ** ** * **
15256074 -T-CGC-TA-CAGTGAAATTTGGGCTCAA-ATTATCA--GGTGG--ATGAGGGTTTC-TCAACCG
274 ATAATCTTATAAATG-ATTTTAAGTTGAATTTTTTCATTTTTGGTTAAAACAG-ATCAT-AA-TT
*
15256129 GCCGAGGGT
335 G--GA-TGT
** * **** ** * * * ***
15256138 TTTTCTCTA--AAACCCCTCCTTTC-AAA--C-TTAATT-A-AATAAATGCCTTAACATTGGGAG
1 TTGCCTC-AGGAAA--CGT-GAAGCGAAAGCCATCCATTGACAAGAAAAGTC-T---ATTTATAG
* * * * ** *** * ** *
15256195 TC-CATGAT-CAACTATG---G--T-GTTAAT-GAAATGGAAAATGG-GGCAGCAA-CCAACAAG
58 TCAC-TCATGC--CTTTGAAAGACTAGTTACTCG--CT-TTAAATGGTTTTA-TAATCTTATAA-
** * * ** * * **
15256249 ATAGCATGCT-GGATAGAAAGTTTCTTACTGCAGCGAGATTTAGGCAGCAAAACAGAAAGTTTCT
115 AT-G-ATTTTAAG-TTG-AA-TTT-TT--T--TTC-A-TTTTTGG--TTAAAACAG--A-----T
* ** * * * * * * * ** * **
15256313 CACTGCAGCGAGAATAAATCT-CGTTGTAGCTGCAGCGAGGAGCATCAGCAACTTTCTCGCTGCA
159 CA-T-AATTG-G-AT--GTTTGCCTTG-A---GAAACGTGAAGCAAAAGC--C-ATC-CATTG--
* * * ** * * * *
15256377 ACGAGAATCAAG-CCAATGTA-A--CCCTCCAAACC--C-AAGAGA-T-TTTCGCTGCAAC--AA
208 ACAAGAA--AAGTCC-ATTTATAGTCACT-CATGCCTTCGAA-AAACTAGTT-ACT-C-ACTTTA
* *** * * * * **** **** * * *
15256431 GAATGAATCTCGCTGCAGC-GAGAAATAGGACACCAACAACAA-GTTTTCA-TTTT-CTCAAGAA
265 -AATG-GT-TTTAT-AATCTTATAAAT--GATTTTAAGTTGAATTTTTTCATTTTTGGTTAA-AA
* **
15256492 AAGGCCAT--TT--A-G-
323 CAGATCATAATTGGATGT
* * * ** ** * *** ** ** **
15256504 CTG-C-AAAGACAATATCCA-CTTGAACATGCTTAGAAATTTCCAAGGTTTAA--C-ATGCA-AG
1 TTGCCTCAGGA-AACGTGAAGC--GAA-A-GC-CATCCATTGACAA-G-AAAAGTCTATTTATAG
* * * * * * * * *
15256562 ATTCA--CATG--TATT-ACA-ACCA-TATACCATACTCATGAACT--TTCTATAA-C--ACACA
58 --TCACTCATGCCT-TTGAAAGACTAGT-TA-C-T-CGCTTTAAATGGTTTTATAATCTTATAAA
* * * * ** ** * * ** * * ** * * *
15256615 T-A-TTT-A--T-ATATATATATACATCATCATGCATACCATCCCACCATCATCAGCTCATGTGC
116 TGATTTTAAGTTGA-ATTTTTTTTCAT--TTTTGGTTA-AAACAGATCATAATTGGAT-GTTTGC
* * * * ** * * *** * * ***
15256674 ACTACTCGCACATA-GTTAGGTCATCA-TCAGCTCATGTGCACTCCCACACG-CACATAGCTAGG
176 -CT--T-G-AGAAACGTGAAG-CAAAAGCCATC-CAT-TG-AC-AAGAAAAGTC-CATTTATA-G
* ** * * *
15256736 TCA-TCAT---TATC-ACACAAA-AAGGAACATC-C----AATGCATATTAT-A-CATATCAACA
229 TCACTCATGCCT-TCGA-A-AAACTAGTTAC-TCACTTTAAATG-GTTTTATAATCTTAT-AA-A
** * ** * ** *
15256788 T-ATTGTGATAACACATGAACCATTTATATGGCACATTTTCACAAGATAGAAACATTTCACCAA-
287 TGATT-T--T-A-AGTTG-A--ATTT-T-T---TCATTTT---TGGTTA-AAACAGATCA-TAAT
* *
15256851 AGGCT-T
334 TGGATGT
* * ** * ** * ** ***
15256857 GTTCCCT-AGGTATATTTTTAAAGAAAAGTTGGATAAAATCATTCAAATGTTTCACCCCAAA-TA
1 -TTGCCTCAGG---A-----AACGTGAAG--CG--AAAGCCA-TC-CAT-TGACA-AGAAAAGT-
* * * * * ** * ** * *
15256920 C-ATCTACAATTC-C-AAAGAAATTTTGAAATG--TAAGTTCACTCACCGGT-ATTCG--TTA-A
48 CTATTTA-TAGTCACTCATG--CCTTTGAAA-GACT-AGTT-ACTC-GCTTTAAATGGTTTTATA
* * * *** ** * *** * * **
15256976 ATCTTTACTCAACTCCAACTTCTTCTAATGGTCTAAATGGGGTGGTGAGGCTTCGTTAGAACCTA
106 ATC-TTA-T-AAAT--GA--T-TT-TAA--GT-TGAAT-TTTTTTTCATTTTTGGTTAAAACAGA
** ** ** * * * * **
15257041 TCATCACATTAACATCATCACCATCA-ACCCAACTTG--GCATTAATA-CTATTCCAAAG-CTAT
158 TCAT-A-ATT-GGATGTTTGCCTTGAGA---AACGTGAAGCA--AA-AGCCA-TCCATTGAC-A-
*** ** * * ** * **
15257101 TTTCTAAA-TTGAGTTATACTAGTCATTCCTACTAG-CTTCCAACTA-TCA-TTAAATGGCTATT
211 --AGAAAAGTCCA-TT-TA-TAGTCACT-C-A-T-GCCTTCGAAAAACT-AGTT-ACTCACT-TT
** * * ** * *** ***** *
15257162 ATTTGCACTACTTTAGTCACA-C-TAAAAATGA--TTAA--ACAATCTCAACAATAAAACAGTCA
264 AAATG--GT--TTTA-T-A-ATCTTATAAATGATTTTAAGTTGAATTTTTTC-AT-TTTTGGTTA
* * * * * **
15257221 CAAATA-A-AATTACTAGACAT
320 -AAACAGATCATAATTGGATGT
** ** ** * **** ** *
15257241 TAT-CAACAACTAAAAATAAATTTTAATTCATTACTCACCTTGGTAGCTTTGTAA-ATTTGAAAT
1 T-TGCCTC-AGGAAACGTGAAGCGAAAGCCA-T-C-CA--TT-G-A-C-----AAGA----AAAG
* ** * * ** ** * * * ***** *
15257304 TCT-TTCTAATAAT-TTTCAAGCTATTATAGAAACTCCTTCTTTCTCTCTCTAAA-ACACCTA-G
47 TCTATT-T-ATAGTCACTCATGC-CTT-T-GAAA-GACTAGTTACTCGCTTTAAATGGTTTTATA
* * * * ** * * ****** ** * * * **
15257365 ATGTGAGAGA-GAATATGGAAGTAAGACTTTTCAAGGGTTTTAAAG-TGAAAGAG-TGA-AAGAG
106 ATCTTATAAATG-AT-TTTAAGT-TGAATTTTTTTTCATTTT-TGGTTAAAACAGATCATAATTG
* * * ** ** * * ** **
15257426 CACAAAGGTT--CTATGA-AAGGGT-ACA-CAAAAG-CATGAAAAGTGGAGCTAGCTTAAG-AGA
167 ---GATGTTTGCCT-TGAGAAACGTGA-AGCAAAAGCCAT--CCA-TTGA-CAAG-AAAAGTCCA
* * * ** ** ** * * **
15257484 GTTA-AG-GA---A-G-CTT-GAAGAGAACTCCCA-TGGA-GGA-TGAAGAAACG--TGA-GAGG
222 TTTATAGTCACTCATGCCTTCGAA-A-AACT---AGT-TACTCACTTTA-AATGGTTTTATAATC
** * ** ** * ** ** ** * ** *
15257535 GAATAAGGAAGA--AGAAGAAGAAGCTGATGGAAATGTGAGAAAAAACTACTGGAAGATGATATA
280 TTATAA--ATGATTTTAAGTTGAA-TTTTTTCATTTTTG-G-TTAAA--AC----AGATCATA-A
* *
15257598 TATAGCTCAAGCT
333 T-T-G--GATG-T
* ** * * * * ** * *
15257611 TATCCAACTCCACTTAAA--T-TA-TGAAA---ATGCCCTTAACAAG-TTAG-CT-TGT-T-CTC
1 T-TGC--CT-CA-GGAAACGTGAAGCGAAAGCCAT-CCATTGACAAGAAAAGTCTATTTATAGTC
**** * ** * * * ** * *
15257664 -CTCAAT-CCTTTGTGCTATTTTTTTACTC-TTTTGACACTGGGACAAGGTCCATAATAGTCTAA
60 ACTC-ATGCCTTTGAAAGA-CTAGTTACTCGCTTT-A-AAT--G----GTTTTATAAT-CT-TAT
* ** *** *** * ** * * * *
15257726 AAAT-A-CTCGAGTTCACGAA-AACTTAAAAATTTT-G---ACCCGAGATGAAAAATGACCAT-T
113 AAATGATTTTAAGTT---GAATTTTTTTTCATTTTTGGTTAAAAC-AGATCATAATTG--GATGT
* ** * * ** ** ** ** ** ** ** **
15257783 TTGCCCCT-A-CCATG-GAAATCATCA-TTATTTTTATTTCCTTCGTCATTTACC-TTTATTTTC
172 TTG-CCTTGAGAAACGTG-AAGCAAAAGCCA--TCCATTGAC-AAGAAAAGT-CCATTTATAGTC
*** * *** * * * * * * *
15257843 A-TCATTTATT--TATGCCTTAGGCCTATTCAGGCTTTAATATTGTTTAAAAACATACTTCTAGG
231 ACTCATGCCTTCGAAAAAC-TA-G-TTACTCA--CTTTAA-ATGGTTT-TATA-AT-CTTATA-A
* ** * *** * *** ** * *
15257905 A-GCTCACTAAGGGAATGACAAAATTGCCCTCAGTCCGGGTTATCAC-GTCTACACCTAGTTACG
286 ATGAT-TTTAA--G-TTG----AATT-TTTTCATTTTTGGTTAAAACAG-AT-CA--TAATT---
15257968 GGCCTATGGGGGT
335 GG---AT----GT
** * ** * * *
15257981 CGAGGTCTCACAAAAACATGAAGCGAAAGCCATCCATTGACAA-AAAAGGTCCATTTGTAGTCAC
1 --TTGCCTCA-GGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAA-GTCTATTTATAGTCAC
* * * * * *
15258045 TCATGCCTTCGGAAGCCTAATTACTCGTTTTATATGGTTTTATAATCTTATAAATGATTTTAAGT
62 TCATGCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGT
* * * * *
15258110 TGAATTTGTTTTTCATTTTTGGCTAAAACATATCATAATTGCATGTTTGTCTCT-AGAAACATGA
127 TGAATTT-TTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCT-TGAGAAACGTGA
* * * * * * *
15258174 AGCAAAATCGATCTATTGACAATAAAGGTCCATTTATAATCGCTCATGCCTTCGAAAAACTAGTT
190 AGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAAACTAGTT
* ** *
15258239 ACTCACTTGAAATACTTTTGTAATCTTATAAATGATTTTAAGTTGAATTTTTTTCATTTTTGGTT
255 ACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA-TTTTTTCATTTTTGGTT
* *
15258304 AAAACATAACATAA-TGTGATGT
319 AAAACAGATCATAATTG-GATGT
* * ** * * *
15258326 TTTCCTCACGAAACGTGAAGCGAAAGCCATCCATTTCCAAGAAGAA-TCCATTCATATTCACCTA
1 TTGCCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAA-AAGTCTATTTATAGTCA-CT-
* * * * * * * *
15258390 CA--CCTTTGAAAAACTAGTTATTC-ATTTAAAT-GTGTTTGTAATATTATAAATCATGTTAAGC
63 CATGCCTTTGAAAGACTAGTTACTCGCTTTAAATGGT-TTTATAATCTTATAAATGATTTTAAGT
* * * * *
15258451 TGAATTATTTTTCTTTTTTGGTTAAAACTGATCATAATTTGATGTTTGCCTTGAGAAATGTGAAG
127 TGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACGTGAAG
** * * * *
15258516 TGAAAGCCATCTATTAACAAGAAAGGTCCATTTATAGTCACTCATGCCTTTGAAAGAA-TAGTTA
192 CAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA-AACTAGTTA
* * ** *
15258580 CTGACTTTAAATGGATTTATAATCTTATAAATGATTTTAAGAAGAATTGTTTTTCATTTTTGATT
256 CTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA-T-TTTTTCATTTTTGGTT
* *
15258645 AAAATAGATCATAATTGGATAT
319 AAAACAGATCATAATTGGATGT
* * * *
15258667 TTGCCTTAAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTAT--T---TCAT
1 TTGCCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCAT
* * * * * * *
15258727 GCCTTCGAAAAACTAGTTACGCCCTTTAAATAGATTTATAATCTTATAAATGATTTTATGTTGAA
66 GCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA
* * * * * ** *
15258792 GTTTTTTTCATTTTTGTTTAAAATAGATCATAATTGGATGTTTGCATTTAGAAAAATGAAGTGAA
131 TTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACGTGAAG-CAA
* * * ** *
15258857 AA-CCATCAATTGACAAGAAAAGTCCATTTATAGTCATTCATGCCTTTGAAAGCCTAATTACTCA
195 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAAACTAGTTACTCA
* * *
15258921 CTTTAAATGGTTTTATAATCTTATAAATGACTTTAAGTTGAACTTGGTTTTTCATTTTTTTAGCT
260 CTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA--T--TTTTTCA--TTTTTGGTT
*
15258986 AAAACAGATCATAATTGGATGA
319 AAAACAGATCATAATTGGATGT
* ** * * *
15259008 TAGCCTTGGGAAACGTAAAGTGAAAGCCATCCATTGACAAGAAAAGTTTATTTATAGTCACTCAT
1 TTGCCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCAT
* * * * *
15259073 GCCTTTGAAAGCCTAGTTGCTCGCTTTAAATGATTTTATAA-CTTTAAAAATGATTAT-AGATTG
66 GCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATC-TTATAAATGATTTTAAG-TTG
* * * ** * *
15259136 AATTTTTTTTTCATTTTTTGTTAAAATAGATCATAATTTGG-TCTTT-TATATTAGGGAACGTGA
129 AA-TTTTTTTTCATTTTTGGTTAAAACAGATCATAA-TTGGATGTTTGCCT-TGA-GAAACGTGA
* * * * * * * * *
15259199 AACAAAATCTATCAATTGACAAGAAAATTTCA-TTATAGTTACTCATGCCATCG-AAAGCTTAGT
190 AGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAAAC-TAGT
* ** * * * * *
15259262 TACTCGCTTTAGGT-GATTTATAA-CTT-TAAAATCATTTTAAATTGAATTTTTTTTATTTTCTT
254 TACTCACTTTAAATGGTTTTATAATCTTAT-AAATGATTTTAAGTTGAA-TTTTTTCATTTT-TG
* * * * **
15259324 G-TAAAACAAAACTTCATTTAATGT
316 GTTAAAACAGATCATAATTGGATGT
* ** * * * * * * *
15259348 TTGCTTTGGGAAACCTGAAGCAAAATCCATCAATTGATAAGAAAAGTCCATTTATATTCACTCAT
1 TTGCCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCAT
* * *
15259413 GCCTTTGAAAGACTAGTTACTCACTTTAAATGGTTTTCTAATCTTGTAAATGATTTTAAGTTGAA
66 GCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA
* * * ** *
15259478 TCTGTTTTTCATTTTTGGCTAAAACAGATCATAATTGGATGTTTGTCTCAAGAAACGTAAAGCAA
131 T-TTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACGTGAAGCAA
* * * * ** **
15259543 AAGCCATCCATTGACAAGAAATGTCCATTTATAGTCACTAATGCCTTTGGAAGGCTAGTTACTTG
195 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAAACTAGTTACTCA
* * * * *
15259608 CTTTAAATGGTTTTATAATCTTATAAATGATTTTAACTTGAGTGTTTTTTTATCTTTGGCTAAAA
260 CTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGA--ATTTTTTCATTTTTGGTTAAAA
*
15259673 TAGATCATAATTGGATGT
323 CAGATCATAATTGGATGT
* * *
15259691 TTGCCTC-GAGAAACGTGAAGTGAATGCCATCCATTTG-CAAGAAAAGTCCATTTATAGTCACTC
1 TTGCCTCAG-GAAACGTGAAGCGAAAGCCATCCA-TTGACAAGAAAAGTCTATTTATAGTCACTC
* * * * ** *
15259754 ATACCTTTAAAAGCCTAATTACTCATTTTAAATGGTTTTATAATCTTATAAATGATTTTAATTTG
64 ATGCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG
* * * * *
15259819 AACCTTTTTTTTAATTTTTGGCTAAAACATATCATAATTGGATGTTTGCCTCT-AGAAATGTCAA
129 AA--TTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCT-TGAGAAACGTGAA
* * * * *
15259883 GCAAAAGACATCCATTGACAAGAAATGTCCATTTATAGTCACTCATGCTTTAGAAAGACTAGTTA
191 GCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAAACTAGTTA
** ** * * *
15259948 CTCTTTTTAAATGCCTTTATAATCTTATAAATGATTTGAAGTTGATTTATTTTCATGTTTGGTTA
256 CTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATT-TTTTCATTTTTGGTTA
*
15260013 AAACAGATCATAA-TGTGATAT
320 AAACAGATCATAATTG-GATGT
* * * ** * * * *
15260034 TTTCCTC-GAGAAATGTGAAGTGAAAGTTATCCATTTG-TAAGAAAACTCCATTTATAGTCACTT
1 TTGCCTCAG-GAAACGTGAAGCGAAAGCCATCCA-TTGACAAGAAAAGTCTATTTATAGTCACTC
* * * * *
15260097 ATACCTTTGAAAGACTAGTTATTCGCTTGAAATGGTTTTATAATCTTATAAATCATTTTAAGCTG
64 ATGCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG
* * * *
15260162 -ATTTTTTTTCCATTTTTGGTTAAAACAGTTCATAGTTAGATGTTTGCCTT-AGGAAATGTGAAG
129 AATTTTTTTT-CATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTGA-GAAACGTGAAG
** * *
15260225 TGAAAGCCATCTATTGACAAGAAAAGTCCATTTATAGTCACTCATG-CATCGGGAAATGTGAAGC
192 CAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC--GAAA----AA-C
* * * * * ** *
15260289 AAAATT-CATC-CATTGAGAA-GAAAAGTCCATTTATAGTC--AGT-AATGCCTTCGAAAGGCT-
250 -TAGTTAC-TCAC-TTTA-AATG----GT---TTTATAATCTTA-TAAATG-ATT-TTAA-GTTG
* ** * ** * *
15260347 AATTACTCATGTTAAATGATTTTATAACTTTACAAA-TGATTTTAAGTAGAAT-T
300 AA-T--T--T-TT---TCATTTT-T--GGTTA-AAACAGATCATAA-TTGGATGT
*** ****** * * * * ** * * * ** *** *
15260400 TTTTTTCATTTTTTGTTAAAAC-ATATCACAATTGGATGTTAGCCTCACGAAACGTGAAGCGAAA
1 TTGCCTCAGGAAACG-TGAAGCGAAAGC-C-A-TCCA--TT-G--ACAAGAAAAGTCTATTTATA
* * ** * * *
15260464 ATCA-TCTATTGAC-AAGAAAAGTCATTTACAGTCACTCATGCCTTCGAAA-GTGTAATTACTCA
57 GTCACTC-A-TGCCTTTG-AAAG--A-CT--AGTTACTC--G-CTT-TAAATG-GT--TT--T-A
* * * * *
15260526 CTTTAAGTGATTTTATAACTTTGAAAATTGTTATAAATTGAA-ATTTTTTCATTTTTTGTTAAAA
104 ---T-A---ATCTTATAA--ATG---A-T-TT-TAAGTTGAATTTTTTTTCATTTTTGGTTAAAA
** * * * * * * * * * * *
15260590 CTTATCATAATTTGATCTTTTGCATTGGGAAACTTGAAACGAAAGCCAACAATTTACAAGAAAAT
154 CAGATCATAATTGGAT-GTTTGCCTTGAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAG
* * * * * * *
15260655 TTCATTTATAGTTACTCATGCCTCCG-AAAGCTTAGTTACTCGCTTTAAGT-GATTTATAA-CTT
218 TCCATTTATAGTCACTCATGCCTTCGAAAAAC-TAGTTACTCACTTTAAATGGTTTTATAATCTT
* * * * * * *
15260717 AAAAAATGATTTTAAATGGAATTTTTTTTCATTTTTTGTTCAAACAGAACATAATTTGATGT
282 -ATAAATGATTTTAAGTTGAA--TTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGT
* * * * * *
15260779 TTGCTTTAGGAAACCTAAAGCGAAATCCATCAATTGACAAGAAAAGT-TCATTTATAGTCACTCA
1 TTGCCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCT-ATTTATAGTCACTCA
* * *
15260843 TGCCTTTGAAAGACTAATTACTCTCTTTAAATGGATTTATAATCTTATAAATGATTTTAAGTTG-
65 TGCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGA
* * * * * **
15260907 ATTTTTTTTCACTTTTGATTAAAACATACCATAATTGGATGTTTGCGC-TGAGAAACGTTAAGTG
130 ATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGC-CTTGAGAAACGTGAAGCA
* * * * *
15260971 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCATTGATGCTTTTGAAAAACTAGTTGCTC
194 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAAACTAGTTACTC
* ** * * * ** * *
15261036 GCTTTAGGTAGTTTTATAACCTTATCAATGATTTTAAGTTGAATTTTTTTTCATTCCCT-ATTGA
259 ACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA--TTTTTTCATT-TTTGGTTAA
* *
15261100 AACATATCATAATTGAATGT
321 AACAGATCATAATTGGATGT
* * * * * *
15261120 TAGCCTCAAGAAACGTGTAGCGAAAGCCAGCCATTGACAAGTAAAGTCCA-TTATAGTCACTCAT
1 TTGCCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCAT
* * * *
15261184 GCCTTTGAAAGACTAATTACTCACTTTAAATGGTTTTATAATCTTGTAAATAATTTTAAGTTG-A
66 GCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA
* * * * * * * *
15261248 -TTTTTTTCATTTTGGGCTATAACTGATCACAATTGGATGTTTTCCTCGAGAAACGTGAAGCGAA
131 TTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACGTGAAGCAAA
* * * *
15261312 AGCCATCCAATGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTGGAAAGACTAGTTGCTCAC
196 AGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAAACTAGTTACTCAC
* * * *
15261377 TTT-AA-------ATAGT-TT-T-AA-G--TTGAA-TT--TTTTTTTCATTTTTGGTTAAAACAT
261 TTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTCATTTTTGGTTAAAACAG
**
15261425 ATTGTAATTGGATGT
326 ATCATAATTGGATGT
* * * * * * * *
15261440 TTGCCT-TGAGACACGTGAAGTGAATGCCATCCGTTTG-CAAGCAAAGTCCAGTTATAGTCACTC
1 TTGCCTCAG-GAAACGTGAAGCGAAAGCCATCC-ATTGACAAGAAAAGTCTATTTATAGTCACTC
* * * * * * * *
15261503 ATGCCTTCGAAGGACTAGTTACTCACTTTAAATGGTTTTATCATCTTGTAAATAATCTTAAGTTT
64 ATGCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG
* * * * * *
15261568 ACTTTTTTTTTCATTTTTGGCTAAAATAGATCATAATTGGATGTTAGCCTTAAGAAACGTGAAGT
129 A-ATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACGTGAAGC
* * * *
15261633 GAAAGCCATCCCTTGACAAGAAAAGTCCATTTATAGTCAATAATGCCTTC-AAAAGACTAGTTAC
193 AAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAA-ACTAGTTAC
* * **
15261697 TCACATTAAATGGTTTTATGATCTTATGTATGATTTTAAGTTGAATTGTTTTTCATTTTTGGTTA
257 TCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA-T-TTTTTCATTTTTGGTTA
* **
15261762 AGACAGATCATAATCAGATGT
320 AAACAGATCATAATTGGATGT
* * * *
15261783 TTGCCT-AGGGAAACGTGAAGCAAAAGTCATCCATTAAGAAGAAAAGT-TCATTTATAGTCACTC
1 TTGCCTCA-GGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCT-ATTTATAGTCACTC
* * * * *
15261846 ATGCCTTAGAAAGACTAGTTATTCACTTTAAATGGTTTTATAGTCTCATAAATGATTTTAAGTTG
64 ATGCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG
** * * * *
15261911 AATTTTTTTTC-TTGTTTCATTAAAAAAGATCATAATTGGATGTTTACCTT-AGGAAACATGAGG
129 AATTTTTTTTCATT-TTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTGA-GAAACGTGAAG
* * * *
15261974 CGAAAGCCATCCATTGACAAGAAAAGTTCATTTATAGTCACTTATGCCTTCGAAAGACTAGTTAC
192 CAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAAACTAGTTAC
* * * * * ** *
15262039 TCACATTAAATGGTTTTATAATCTTGTAAATGATTTTATGTTGATTTTTTTTATTTTTTATTGAA
257 TCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTCATTTTTGGTTAAA
15262104 ACAGATCATAATTGGATGT
322 ACAGATCATAATTGGATGT
** * ** * *
15262123 TTGCCTTGGGAGACGTGATA-TAAAAGCCATCTATTGACAAGAAAAGTCCATTTATCA-TCACTC
1 TTGCCTCAGGAAACGTGA-AGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTAT-AGTCACTC
** * * * *
15262186 ATG-CTTTCGAAAGTGTAATTACTAGCTTTAAATGGTTTTATAAACTTATAAATGATTTTAAGCT
64 ATGCCTTT-GAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTT
* * * * * * **
15262250 -ATTTTTTTTTCATTTTTTGTTAAAACAAATCATAATTGGATGTTTTCCTTAAGAAACATGCCGC
128 GAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACGTGAAGC
* *
15262314 AAAAGCCATCCATTGAC-AGAAAAAGTCCATTTATAGTCACTCATGGCTTCGAAAGACTAGTTAC
193 AAAAGCCATCCATTGACAAG-AAAAGTCCATTTATAGTCACTCATGCCTTCGAAAAACTAGTTAC
* * * *
15262378 TCCCTTTAAAGGGTTTTATAATCTTGTAAATGATTTTAAGTTGAATTTGTTTTTCATTTTTAGTT
257 TCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA--T-TTTTTCATTTTTGGTT
*
15262443 AAAACAGATCATAATTGGATAT
319 AAAACAGATCATAATTGGATGT
* *
15262465 TTGCCTCAAGG-AACGTGAAGTGAACA-TCATCCATTGACAAGAAAAGTCTATTTATAGTCACTC
1 TTGCCTC-AGGAAACGTGAAGCGAA-AGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTC
** * * * * * * *
15262528 ATGTGTTCGAAATACTAGTTACTCACTTTAAATGGTTTTGTAATCTTATAACTGATTTCATGTTG
64 ATGCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG
* * * * * *
15262593 AATTTTTATTCATTTTTAGTTAAAACAGATCATAATTGGATGTTTACCATGGGAAACGTGAAGCG
129 AATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACGTGAAGCA
* * * * * * * *
15262658 AAAGCGATCCATTGATAAGAAAAGTCTATTTATTGTTACTAATG-CTTTGAAATACTAGTTACTC
194 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAAACTAGTTACTC
* * * *
15262722 GCTTTAAATGGTTTTATAATCTTGTAAATAATTTTAAGTTGAATTATTTTTTTATTTTTGGTTAA
259 ACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG-A--ATTTTTTCATTTTTGGTTAA
*
15262787 AACAGATCATAATTAGATGT
321 AACAGATCATAATTGGATGT
* * * *
15262807 TTGCCTTGCA--AAAAGTGAAGTGAAAGCCATCCACTGACAAGAAAAGTCCATTTATTA-TCACT
1 TTGCC-T-CAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTA-TAGTCACT
**
15262869 CATGCCTTTGAAAGACTAGTTACTCATTTTAAATGGTTTTATAATC-TAGTAAATGATTTTAAGT
63 CATGCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTA-TAAATGATTTTAAGT
* * * * *
15262933 TGAATTGTTTTTTCATTTTGGGCTAAAAC-GTATTATAATTGGATGCTTGCCTTG-GAAAACATG
127 TGAATT-TTTTTTCATTTTTGGTTAAAACAG-ATCATAATTGGATGTTTGCCTTGAG-AAACGTG
* * * * * *
15262996 AAGCAAAAGCCATCCATTTACAAAAAAAGTCTATCTATCGTCACTCATG-CTTCGAAATACTAGT
189 AAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAAACTAGT
* * * *
15263060 TACACGCTTTAAATGGTTTTATAATCTTATAACTGATTTTATGTTGAATTTGTTTTCA-TTTTGG
254 TACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA-TT-TTTTCATTTTTGG
* * * *
15263124 TGAAAATAGATCCT-ATTAGATGT
317 TTAAAACAGATCATAATTGGATGT
* * * * ** * *
15263147 TTCCCTCAAGACACGTGAAGTGAAAGCCATATATTGATAAGAAAAGTCCATTTATAGTCACTCAT
1 TTGCCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCAT
** * * * *
15263212 GCCTTCAAAAGACTAGTTATTCGCTTTAAATGGTTTTATAATCTTATAAACGATCTTAAG-TCAA
66 GCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA
* * * * *
15263276 ATTTTTTTCATTTTTGGCTAAAACAGATCATAATTGGATGTTAGCCTTGGGAAACGTGAAGCGAA
131 TTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACGTGAAGCAAA
** * ** * * * *
15263341 ATTCATCAATTGAC-AGAAAAGTCTGTTTATAGTCACTCATGCCTTTG-AAGACTAGGTACTCGC
196 AGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAAACTAGTTACTCAC
* * * * * *
15263404 GTTCAATGGTTTTATAATTTTATAAGTGATTTTAAGTTGAATTTTTTTTATTTTTGGTTAAAATA
261 TTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA-TTTTTTCATTTTTGGTTAAAACA
15263469 GATCATAATTGGATGT
325 GATCATAATTGGATGT
* * * *
15263485 TTGCCTCAAGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATATTCACTCAT
1 TTGCCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCAT
* * * * *
15263550 GCCTTCGAAAGAATAGTTACTTGCTTTAAATGGTTTTATAATCTTATAAGTGATTTTAAGTTAAA
66 GCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA
* * * ** ** *
15263615 TTTTTATTCATTTTTGGCTAAAACAGATGATAATTAAATGTTAACCTT-AGAAAATGTGAAGCAA
131 TTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTGAG-AAACGTGAAGCAA
** * * * *
15263679 AAGTTATCCATTGACAAGAAAAGTCTATTTATAGTCACTTATGCCTTC-AAACGACTACG-TGCT
195 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA-AACTA-GTTACT
* ** * *
15263742 CGCTTTAAATGGCGTTATAATCTTATAAATGACTTTAAGTTGAATTTTTTTTTTTAATTTTTGGT
258 CACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA-----TTTTTTCATTTTTGGT
15263807 TAAAACAGAT-AGTAATTGGATGT
318 TAAAACAGATCA-TAATTGGATGT
** ** * * * * ** *
15263830 TTGCCTTGGGAAATATGAAGTGAAAGCCATCCATTGACAAAAAAAGTCCATTTATATTGGCTCAC
1 TTGCCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCAT
** ** * * * ** * *
15263895 GTGTTCAAAAGACTACTTACTCGTTTTAAATAGTGCTATAATCTTATAAATGATTTTGAGTTAAA
66 GCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA
* * *
15263960 TTTTTTTTTAATTTTTGGTTAAAGCAGATCATAATTGGATCTTTGCCTCTGA-AAACGTGAAGCA
131 -TTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCT-TGAGAAACGTGAAGCA
* * * *
15264024 AAAGCCATCAATTGACAAGAAAAGTCCATTTATATTCACTCATGCTTTTGAAAGAA-TAGTTACT
194 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA-AACTAGTTACT
* * ** * *
15264088 CGCTTTAAATGATTTTATAATCTTATACGTGATTTTAAGTTGAATTTTCTTTCCTTTTTTGGGTA
258 CACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA-TTT-TTT-CATTTTTGGTTA
*
15264153 AAACAGATGATAATTGGATGT
320 AAACAGATCATAATTGGATGT
* * * * * * * *
15264174 TAGCCTCAAGAAACGCGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTTTACTCATTCAT
1 TTGCCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCAT
* * * * *
15264239 GCCTTCGAAAGACTAGGTACTTGCTTTAAATGGTGTTATAATCTTATAAATGACTTTAAGTTG-A
66 GCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA
* *
15264303 ---TTTTT--TTTTT-GTTAAAATAGATCATAATTGGATGTTTGCCTTGGGAAACGTGAAGCAAA
131 TTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACGTGAAGCAAA
* * * * * * * **
15264362 A-ACAACCATTGGCAAGAAAAGTCCATTTACATTTACTCATGCCTTTGAAAGAA-TAACTACTCA
196 AGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA-AACTAGTTACTCA
* * *
15264425 CTTTAAATGGTTTTATAATTTTATAAATGATTTTAAGTTGAATTTTTTTTCTTTTTTGGCTAAAA
260 CTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA--TTTTTTCATTTTTGGTTAAAA
* **
15264490 CAGATTATAATTCTATGT
323 CAGATCATAATTGGATGT
* ** * * ** *
15264508 TAGCCTTGGGAAACATGAAGCGAAAGGCATCCATTGAGTAGAAAAGTCTACTTATAGTCACTCAT
1 TTGCCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCAT
* *
15264573 GCCTTCT-AAATG-CTAGTTACTCGCTTTAAATGGTTTGATAATCTTATAAATGATTTTATGTTG
66 GCCTT-TGAAA-GACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG
* * * * *
15264636 AATTTGTTTTCATTTTTTGTTAAAACAGATCATACTTGGATGTTTGCC-TCAGGAAACGTGAAAC
129 AATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTGA-GAAACGTGAAGC
* * * *
15264700 GAAAGCCATCCATTGACAAGTAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGACTAGTTACT
193 AAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAAACTAGTTACT
* * * *
15264765 CACTTTAAATAGTTTTCTAATCTTGTAAATGATTTTAAGTTGAATTCTTTTTCCTTTTTGGTTAA
258 CACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA-T-TTTTTCATTTTTGGTTAA
*
15264830 AACATATCATAATTGGATGT
321 AACAGATCATAATTGGATGT
* * * * * *
15264850 TTGCCTCTGGGAACGTGAAGCGAAAGCCATCCATTGATAAGAAAAGTCTGTTTATGGTCACTGAT
1 TTGCCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCAT
* * * * ** *
15264915 GTCTTTGAATGGCTAATTACTCATTTTAAAT-GTTTTATAATCTTATAATTGATTTTAAGTTGAA
66 GCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA
* * * * * * *
15264979 CCTTTTTTTCATTCTTT-GCTAAAATAGATCATAATTGGATGCTAGCACTAG-GAAATGTGAAGC
131 -TTTTTTTTCATT-TTTGGTTAAAACAGATCATAATTGGATGTTTGC-CTTGAGAAACGTGAAGC
* * * ** * * *
15265042 GAAAGCCATCCATTGACAAAAAAAGCCCATTTAT-GTCGGTAATTCCTTCGAAAGACTAGTTACT
193 AAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAAACTAGTTACT
* * * * ** ** *
15265106 TACGTTAAATAGTTTTATAATCTTATAATTGATTTTAAGTTGAATTTGTTTTTGTTTTTGACTGA
258 CACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA-TT-TTTTCATTTTTGGTTAA
* *
15265171 AATATATCATAATTGGATGT
321 AACAGATCATAATTGGATGT
** **
15265191 TTGCCTCAGGAAATATGAAGCGAAAGCCATGTATTGACAAGAAAAGT-TCATTTATAGTCACTCA
1 TTGCCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCT-ATTTATAGTCACTCA
* * * ** * * *
15265255 TGCCTTTAAAAGGCTAGTTAGTTTCTCTAAATGGTTTTATAATCTTGTAAATGATTTTAAATTG-
65 TGCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGA
* * ** * *
15265319 ATTTTTATTTCATTTTTAGTTAAAATAGATCATAATTCAATGCTTGCCTT-AGGAAACATGAAGC
130 ATTTTT-TTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTGA-GAAACGTGAAGC
* * * * * * *
15265383 GAAAGCTATCCATTGGCAGGAAAAGTCCATTTGTAGTGACTCATG-CTT--AAAAGACTAGTTAT
193 AAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAA-ACTAGTTAC
* * * * * *
15265445 TCGCTTTAAGTGGTTTTTTAATCTTGTAAATGATTTTAAATTGATTTTTTTGTCATTTTTGGTTA
257 TCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGA-ATTTTT-TCATTTTTGGTTA
* *
15265510 AAACATATCAAAATTGGATGT
320 AAACAGATCATAATTGGATGT
** * * * * * * * *
15265531 TTGCCTCAAAAAAAGTGAAGAGAAAGACATCCGTT-A-ATGGAAAAAGTCCATTTATACTCACTT
1 TTGCCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACA-AG-AAAAGTCTATTTATAGTCACTC
* * * *
15265594 ATGCCTTCGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTGTAAATGATCTTAAGTTG
64 ATGCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG
* * * ** ** * *
15265659 AGGTTTTTTTTTTCATTTTTTGCTAAAACATTTCATAATTGGATGTTAACCTT-AGGAACCATGA
129 A---ATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTGA-GAAACGTGA
* * * *
15265723 AGCGAAAGCCATCTATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGACTAGTT
190 AGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAAACTAGTT
* * * * *
15265788 ACTCGCTTCAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTCTTTTTTGGCT
255 ACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA-TTTTTTCATTTTTGGTT
*
15265853 AAAACAAATCATAATTGGATGT
319 AAAACAGATCATAATTGGATGT
* * * * * * * *
15265875 TAGCACT-AAGAAACGTGAAGTGAAAGCCATCCATTGACAAGGAATGTCAATTTATAGTCAGTAA
1 TTGC-CTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCA
* * * * **
15265939 TGCCTTTGAAAGACTAGTTACTCACGTTAAAGGGTTTTATAATCTTGTAAACAATTTTAAGTTGA
65 TGCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGA
* * * * * ** *
15266004 CATTTCTTTTAATTTTTGGTTAAAACATATCATAATTGGATATTTACCTAAAAAAACGTGAAGCA
130 -ATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACGTGAAGCA
* * * * * *
15266069 AAAGCCATCAATTGACAAGAAAGGTCCATTTATAGACACTTATGCCTTCGAAAAACTTGTTCCTC
194 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAAACTAGTTACTC
* * * *
15266134 GCTTTAAATGGTTTTCTAATCTTGTAAATGATTTTAAGTTGAATTTGTTTTTCATTTTTGTTTAA
259 ACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA--T-TTTTTCATTTTTGGTTAA
* *
15266199 AACATAGCATAATTGGATGT
321 AACAGATCATAATTGGATGT
* * * * * ** * *
15266219 TTACCTCAAGAAATGTGATGTGAAAGCTGTCTATTGACAAGAAAAATCTATTTATAGTCACTCAT
1 TTGCCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCAT
** * *
15266284 GCCTTCCAAATACTAGTTACTCGCTTTAAATGGTTTTATAATCTTAGAAATGATTTTCAA-TTG-
66 GCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTT-AAGTTGA
* * *
15266347 ATTTTTATTTCATTTTTGGTTAAAACAAATCATAATTGGATGTTTGCCTTG-GAAAATGTAAAGC
130 ATTTTT-TTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTGAG-AAACGTGAAGC
* * * * * *
15266411 GAAAGCCATCTATTCACAATAAAAGTCCATTTATACTCACTCATG-CTTC-AAAAGACTTGTTAC
193 AAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAA-ACTAGTTAC
* * * *
15266474 TCGCTTTAAATGCTTTTATAATCATAT-AATCAATTTTAAGTTGAAT
257 TCACTTTAAATGGTTTTATAATCTTATAAAT-GATTTTAAGTTGAAT
15266520 ATTGTAACAG
Statistics
Matches: 14765, Mismatches: 3665, Indels: 2503
0.71 0.18 0.12
Matches are distributed among these distances:
319 1 0.00
320 65 0.00
321 74 0.01
323 3 0.00
324 112 0.01
325 6 0.00
327 1 0.00
328 47 0.00
329 146 0.01
330 17 0.00
331 81 0.01
332 51 0.00
333 11 0.00
334 144 0.01
335 125 0.01
336 168 0.01
337 438 0.03
338 476 0.03
339 1038 0.07
340 2225 0.15
341 2319 0.16
342 2323 0.16
343 1380 0.09
344 852 0.06
345 348 0.02
346 269 0.02
347 113 0.01
348 84 0.01
349 34 0.00
350 29 0.00
351 25 0.00
352 38 0.00
353 21 0.00
354 20 0.00
355 22 0.00
356 19 0.00
357 29 0.00
358 53 0.00
359 33 0.00
360 32 0.00
361 57 0.00
362 75 0.01
363 39 0.00
364 28 0.00
365 60 0.00
366 62 0.00
367 62 0.00
368 42 0.00
369 48 0.00
370 47 0.00
371 73 0.00
372 97 0.01
373 84 0.01
374 79 0.01
375 61 0.00
376 42 0.00
377 39 0.00
378 26 0.00
379 48 0.00
380 25 0.00
381 18 0.00
382 13 0.00
383 19 0.00
384 19 0.00
385 28 0.00
386 30 0.00
387 19 0.00
388 25 0.00
389 25 0.00
390 6 0.00
391 9 0.00
392 4 0.00
393 8 0.00
394 2 0.00
396 10 0.00
397 11 0.00
398 15 0.00
399 5 0.00
400 2 0.00
401 4 0.00
402 8 0.00
403 31 0.00
404 67 0.00
405 19 0.00
406 2 0.00
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.37
Consensus pattern (340 bp):
TTGCCTCAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCAT
GCCTTTGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA
TTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACGTGAAGCAAA
AGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAAACTAGTTACTCAC
TTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTCATTTTTGGTTAAAACAG
ATCATAATTGGATGT
Found at i:15251715 original size:233 final size:232
Alignment explanation
Indices: 15251296--15251742 Score: 531
Period size: 233 Copynumber: 1.9 Consensus size: 232
15251286 ATGTGAAGTG
* * **
15251296 AAAACCATCCATTTGCAAGAAAAGTCTATTTATAGTCACTTATACCTTTGAAAGACTAGTTACTC
1 AAAACCATCCATTTGCAAGAAAAGTCCATTTATAGTCACTAATACCTTCCAAAGACTAGTTACTC
* * **
15251361 GCTTGAAATGGTTTTATAATCTTATAAATCATTTTAAGCAGATTTTTTTTTCATTTTGGTTAAAA
66 ACTTGAAATGATTTTATAATCTTATAAATCATTTTAAGCAGATAATTTTTTCATTTTGGTTAAAA
* * * ** *** * * * * *
15251426 CAGTTGATAGTTAGATGTTTTCCTTGGGAAATGTGAAGTGAAAGCCATCTATTGACAAGAAAAGT
131 CAGATCATAATTAGATGTTAGCCTCACGAAACGTGAAGCGAAAACCATCCATTGACAAAAAAAGT
* *
15251491 CTATTTCTAGTCACTCATGTCTCGGGAAATGTGAAAC
196 CCATTTATAGTCACTCATGTCTCGGGAAATGTGAAAC
* * * **
15251528 AAAATCCATCCA-TTGAGAAGAAAAGTCCATTTATAGTCAGTAATGCCTTCCAAAGTTTAGTTAC
1 AAAA-CCATCCATTTG-CAAGAAAAGTCCATTTATAGTCACTAATACCTTCCAAAGACTAGTTAC
* * **
15251592 TCACGTT-AAATGATTTTATAATTTTATAAATGATTTTAAGTTGA-AATTTTTTCATTGTTGGTT
64 TCAC-TTGAAATGATTTTATAATCTTATAAATCATTTTAAGCAGATAATTTTTTCATT-TTGGTT
* *
15251655 AAAACAGATCATAATTGGATGTTAGCCTCACGAAACGTGGAGCGAAAACCATCCATTGACAAAAA
127 AAAACAGATCATAATTAGATGTTAGCCTCACGAAACGTGAAGCGAAAACCATCCATTGACAAAAA
15251720 AAGTCCATTTATAGTCACTCATG
192 AAGTCCATTTATAGTCACTCATG
15251743 CCTTTAAAAG
Statistics
Matches: 177, Mismatches: 34, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
232 17 0.10
233 158 0.89
234 2 0.01
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (232 bp):
AAAACCATCCATTTGCAAGAAAAGTCCATTTATAGTCACTAATACCTTCCAAAGACTAGTTACTC
ACTTGAAATGATTTTATAATCTTATAAATCATTTTAAGCAGATAATTTTTTCATTTTGGTTAAAA
CAGATCATAATTAGATGTTAGCCTCACGAAACGTGAAGCGAAAACCATCCATTGACAAAAAAAGT
CCATTTATAGTCACTCATGTCTCGGGAAATGTGAAAC
Found at i:15252111 original size:159 final size:156
Alignment explanation
Indices: 15251808--15255157 Score: 490
Period size: 170 Copynumber: 19.9 Consensus size: 156
15251798 TAGATTGAAG
* ** **
15251808 TTTTTTTT-ATTTTTTGTTAAAACAAATCATAATTTGATCTTTTGCATTGGGAAACAAGAAATGA
1 TTTTTTTTCATTTTTTGTTAAAACAAA-CATAATTTGAT-GTTTGCATTGGGAAACTTGAAGCGA
* * * *
15251872 AAGCCATCAATTGACAAGAAAATTTCT-TTTATAGTTAATCATGCCTTCAAAAGCTTAGTTACTC
64 AAGCCATCAATT-ACAAGAAAA-GTCTATTTATAGTCACTCATGCCTTCAAAAGATTAGTTACTC
* *
15251936 ACGTTAAGTGATTTTATAACTTTAAAAATGA
127 ACTTTAAATGA-TTTATAACTTTAAAAATGA
* * * * *
15251967 TTTTTTTTCATTTTTTGTTCAAATAGAACATCATTTGATGTTTGCTTTAGGAAACTTGAAGCGAA
1 TTTTTTTTCATTTTTTGTTAAAACA-AACATAATTTGATGTTTGCATTGGGAAACTTGAAGCGAA
* * *
15252032 ATCCATCAATTAACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCGAAAGATTAGTTACTCTC
65 AGCCATCAATT-ACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCAAAAGATTAGTTACTCAC
15252097 TTTAAATGGATTTATAATCTTATAAATGATTTTAAGTTGAA
129 TTTAAAT-GATTTATAA-CTT-T-AA--A----AA--TG-A
* * * * *
15252138 ATTTTTTTCA-TTTTTGCTAAAACATACCATAATTGGATGTTTGCATTGGGAAACGTT-AAGCAA
1 TTTTTTTTCATTTTTTGTTAAAACA-AACATAATTTGATGTTTGCATTGGGAAAC-TTGAAGCGA
* * * * * *
15252201 AAGCCATCCATTACAAGAAAAGTCCATTTATAGTCACTGATGCCTTCAAAAAACTAGTTACTCGC
64 AAGCCATCAATTACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCAAAAGATTAGTTACTCAC
*
15252266 TTTAAATAGTTTTATAACCTTATCAATGATTTTAAGTTGAA
129 TTTAAAT-GATTTATAA-CTT-T-AA--A----AA--TG-A
** * * * * * * *
15252307 TTTTTTTTCATTCCTGGTTAAAACAGATCATAATTGGATGTTAGCCTTAGGAAA-TGTGAAGCAA
1 TTTTTTTTCATTTTTTGTTAAAACA-AACATAATTTGATGTTTGCATTGGGAAACT-TGAAGCGA
* * * * * * * ** *
15252371 AAGCCAACCATTGACAAGTAAAGTCCATTTATAATAACTTATGCCTTTGAAAGACTAG-T--T-A
64 AAGCCATCAATT-ACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCAAAAGATTAGTTACTCA
*
15252432 CTTTAAATAGTTTTATAATCTTGTAAATAATTTTAAGTTGA
128 CTTTAAAT-GATTTATAA-CTT-T--A-AA----AA--TGA
** * * * * * * * * ** * *
15252473 TTTTTTTTCATTTTAGGCTACAACTGATCACAA-TTGAATGTTTACCTCGACAAACATGAAGCAA
1 TTTTTTTTCATTTTTTGTTAAAAC-AAACATAATTTG-ATGTTTGCATTGGGAAACTTGAAGCGA
* * * * * ** * * **
15252537 AAGTCATCCATTAACAGGACAAGTCCATTTATAGTCACTCATGCCTTGGAAAGACTAATTACTTG
64 AAGCCATCAATT-ACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCAAAAGATTAGTTACTCA
* *
15252602 CTTTAAATGATTTTATAGTCTCATAAATGATTTTAAGTTGAA
128 CTTTAAATGA-TTTATA-ACT--TTAA--A----AA--TG-A
* * * * * * ** * **
15252644 TTTTGTTTCATTTTTTTATTAAAATAGATCATAATTGGATGTTTGCCTCAGGAAACATGGGGCGA
1 TTTTTTTTCA-TTTTTTGTTAAAACA-AACATAATTTGATGTTTGCATTGGGAAACTTGAAGCGA
* * * * *
15252709 AAGCCATCCATTGTCAAGAAAAGT-TCATTTATAGTCACTCATGCCTTCGAAACACTAGTTACTC
64 AAGCCATCAATT-ACAAGAAAAGTCT-ATTTATAGTCACTCATGCCTTCAAAAGATTAGTTACTC
* *
15252773 ACATTAAATGGTTTTATAATCTTGTAAATGATTTTATGCTGAA
127 ACTTTAAAT-GATTTATAA-CTT-TAAA--A----A---TG-A
* * * * * * *
15252816 TTGTTTTTCATTTTTTATTAAAACAGATCATAATTGGATGTTTGCCTCT-GGAGACATGAAAG-G
1 TTTTTTTTCATTTTTTGTTAAAACA-AACATAATTTGATGTTTGCAT-TGGGAAACTTG-AAGCG
* * * * * *
15252879 AAAGCCATCTAATGACAAAAAAAGTCTATTTATAGTCACTCATGCTTTCGAAAGAATAATTACT-
63 AAAGCCATC-AATTACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCAAAAGATTAGTTACTC
** * *
15252943 AGCTGCAAGTGGTTTTATAATCTTATAAACGATTTTAAGTTGAA
127 A-CTTTAAAT-GATTTATAA-CTT-T-AA--A----AA--TG-A
* * * * *** * *
15252987 TTTTTTTTCATTTTTTGGTAAAACATATCATAATTGGATGTTTGCCTCAAGAAACAT-AAGGCAA
1 TTTTTTTTCATTTTTTGTTAAAACA-AACATAATTTGATGTTTGCATTGGGAAACTTGAA-GCGA
* * * * * * *
15253051 AAGCCATCCATTGACAATAAAA-TCTATTTATAGTCACTCATGGCTTCCAAAGACTAGTTAATCC
64 AAGCCATCAATT-ACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCAAAAGATTAGTTACTCA
* * *
15253115 CTTTAAAGGGTTTTATAATCTTGAAAATGATTTTAGGTTAAA
128 CTTTAAA-TGATTTATAA-CTTTAAAA--A---T--G----A
* * * * * *** *
15253157 TTTGTTTTTCATTTTTGGTTAAAACATATCATAA-TTGCTCATTTGCCTCAAGAAACGTGAAGC-
1 TTT-TTTTTCATTTTTTGTTAAAACA-AACATAATTTGAT-GTTTGCATTGGGAAACTTGAAGCG
* * * * ** * *
15253220 AAATGTCATCCATTGACAAGAAAAGTCCATTTAGAGTCACTCATGCCTTTGAAATACTAGTTACT
63 AAA-GCCATCAATT-ACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCAAAAGATTAGTTACT
* *
15253285 CACTTTAAATAGTTTTATAATCTTATAACTGATTTTACGTTGAA
126 CACTTTAAAT-GATTTATAA-CTT-TAA---A----A--ATG-A
* * * * * * * *
15253329 TGTTTTTTCATTTCTAGTTAAAACATATCATAATTGGATGTTTACCA-TGTGAAACGTGAAGC-A
1 TTTTTTTTCATTTTTTGTTAAAACA-AACATAATTTGATGTTT-GCATTGGGAAACTTGAAGCGA
* * ** * ** ** * *
15253392 AACGCGATCTATTGACAAGAAAAGTCTGCTTATTGTCACTC-TTACTTTGAAATACTAGTTACTC
64 AA-GCCATCAATT-ACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCAAAAGATTAGTTACTC
* *
15253456 GCTTTAAATGGTTTTATAATCTTATAAATAATTATAAGTTGA
127 ACTTTAAAT-GATTTATAA-C-T-T---TAA--A-AA--TGA
* * * * * * * * * *
15253498 TTTTTTTTCATTTCTAGTGAAAACATATCATAATTGGATGTTTGCCTTAGGAACCGTGAAGTGAA
1 TTTTTTTTCATTTTTTGTTAAAACA-AACATAATTTGATGTTTGCATTGGGAAACTTGAAGCGAA
* * * * * ** * ***
15253563 AGTCATCAATTGAAAAGAAAACTCCATTTATAGTCACTCATGCCTTCGAAACCTTAGTTATTGGT
65 AGCCATCAATT-ACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCAAAAGATTAGTTACTCAC
*
15253628 TTTAAATGGTTTTATAATCTTTTAAATGATTTTAAGTTGAA
129 TTTAAAT-GATTTATAA-C-TTT-AA--A----AA--TG-A
* * * * * *** ** *
15253669 TTTTTTTTCATTTTTAGCTAAAACAGATCATAATTGGATGTTTGCCTAAAGAAACGAGAAGCAAA
1 TTTTTTTTCATTTTTTGTTAAAACA-AACATAATTTGATGTTTGCATTGGGAAACTTGAAGCGAA
* * * ** * * * ** ** **
15253734 AGCCATCCATTGATAAGAAAAGTCCATTTGCAGTTAGTAACACCTTTGAAAGACTT-GTTACTTG
65 AGCCATCAATT-ACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCAAAAGA-TTAGTTACTCA
*
15253798 CTTTAAATGGTTTTATAATCTTGTAAATGATTTAAAGTTGA
128 CTTTAAAT-GATTTATAA-CTT-T--A--A---AAA--TGA
* * * * * *** * **
15253839 -TTTTTTTCATTTTTGGTTAAAACATATCATAATTAGATGTTTACCTCAAGAAACGTGAAGTTAA
1 TTTTTTTTCATTTTTTGTTAAAACA-AACATAATTTGATGTTTGCATTGGGAAACTTGAAGCGAA
* * * * ** *
15253903 AACCATTC-ATTGACAAGAAAGGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTAATTACT-A
65 AGCCA-TCAATT-ACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCAAAAGATTAGTTACTCA
*
15253966 GCTTTAAATGATTTTATAATCTTATAAATGATTTTAAGTTAA
128 -CTTTAAATGA-TTTATAA-CTT-T-AA--A----AA--TGA
* * * * * * *** * *
15254008 TTTTTTTTCATTTTTGGCTAATACAAATCCTAATTGGATGTTTGC-CTCAAAAAATGTGAAGTGA
1 TTTTTTTTCATTTTTTGTTAAAACAAA-CATAATTTGATGTTTGCATTGGGAAACT-TGAAGCGA
* * * * * * * *
15254072 AAGGCATCCATTGACAAG-AAAGGCTCATTTTTATTCACTCATG-CTTTAAAAGACTAGTTACTT
64 AAGCCATCAATT-ACAAGAAAAGTCT-ATTTATAGTCACTCATGCCTTCAAAAGATTAGTTACTC
* * *
15254135 GCTTTAAATGGTTTTATAA-TCTT-AAGATGAAA
127 ACTTTAAAT-GATTTATAACT-TTAAAAATG--A
* * * * * * *
15254167 TTTTTTTTCATTTTTAGTTGAAACATATCATAATTGGATGTTTGCCTTGAGAAACGTGAAGCGAA
1 TTTTTTTTCATTTTTTGTTAAAACA-AACATAATTTGATGTTTGCATTGGGAAACTTGAAGCGAA
* * * * * * * *
15254232 AACCATCCATTAACAAGAAAAGTCCATTTATAGTTAGTAATACCTTCAAAAGACTAGTTACTCAC
65 AGCCATCAATT-ACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCAAAAGATTAGTTACTCAC
* *
15254297 GTTAAATGGTTTCATAATCTTATAATTGACTTTTAAGTTGAA
129 TTTAAATGATTT-ATAA-CTT-TAA---A-----AA--TG-A
** * * * * * *** *
15254339 TTTTAGTTCATGTTTTGTTAAAACATATCATAATTGGATGTTTACCTCAAGAAACATGAAGCGAA
1 TTTTTTTTCATTTTTTGTTAAAACA-AACATAATTTGATGTTTGCATTGGGAAACTTGAAGCGAA
* * * * * * * * ** *
15254404 AGCCATCTATCGACAAGGAGAGT-TCATTTATAATCGCTTATGCCTTCGAAAGGCTAGTTACTTG
65 AGCCATCAAT-TACAAGAAAAGTCT-ATTTATAGTCACTCATGCCTTCAAAAGATTAGTTAC-TC
*
15254468 A-TTTAAATGGTTTTATAATCTTGTAAATGATTTTAAGTTGAA
127 ACTTTAAAT-GATTTATAA-CTT-T-AA--A----AA--TG-A
* * * * *
15254510 TTGTTTTTCA-TTTTTGATTAAAACAAATCATAATTGGATGTTTGCATTCGGAATCGTGAAGCGA
1 TTTTTTTTCATTTTTTG-TTAAAACAAA-CATAATTTGATGTTTGCATTGGGAAACTTGAAGCGA
* * * * ** * **
15254574 AAGCCATCCATTGACATGAAAAGTCTATTTATTGTCACTGATGCCTTTGAAAGACTAGTTACTTG
64 AAGCCATCAATT-ACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCAAAAGATTAGTTACTCA
* * *
15254639 CTTTAAATGGTTTTACAATCTTATCAATGATTTTAAGTTTA
128 CTTTAAAT-GATTTATAA-CTT-T-AA--A----AA--TGA
* * * * *
15254680 GTTTTTTTAATTTTTTGTTAAAACAGATCATAATTTGATATTTGCATTGGGAAACGTGAAGCGAA
1 TTTTTTTTCATTTTTTGTTAAAACA-AACATAATTTGATGTTTGCATTGGGAAACTTGAAGCGAA
* * * * * * ** * * *
15254745 AGCCATCCATTGGCATGAAAAGTCTATTTATTGCCACTGATGCCTTTGAAAGAGTAGTTACACGC
65 AGCCATCAATT-ACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCAAAAGATTAGTTACTCAC
* * *
15254810 TTTAAATGGTTTTACAATCCTATCAATGATTTTAAGTTGA
129 TTTAAAT-GATTTATAA--CT-TTAA--A----AA--TGA
* * * * * * * * * *
15254850 ATTGTTTTCATTTTTGGTTTAAACATATCATAA-TTGAATGTTTTCCTTGAGAAACGTGAAGTGA
1 TTTTTTTTCATTTTTTGTTAAAACA-AACATAATTTG-ATGTTTGCATTGGGAAACTTGAAGCGA
* * * * * * * * *
15254914 ATGCCATCCATTTGCAAGCAAAGTCCATTTATAGTCACTCATGGCTTTAAAGGACTAGTTACTCA
64 AAGCCAT-CAATTACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCAAAAGATTAGTTACTCA
* *
15254979 CTTTAAATGGTTTTATCATCTTATAAATAATCTTAAGTTGA
128 CTTTAAAT-GATTTAT-AACTT-T--A-AA----AA--TGA
* * * * * * **
15255020 TTTTTTTTTCATTTTTGGCTAAAA-AGATCATAATTGGATGTTAGCCTCAGGAAA-TGTGAAGCG
1 -TTTTTTTTCATTTTTTGTTAAAACA-AACATAATTTGATGTTTGCATTGGGAAACT-TGAAGCG
** * * * * * * *
15255083 AAAGCCATCTCTTGACAAGAAAAGTCCACTTATAGTTAATAATGCCTTCGAAAGACTAGTTACTC
63 AAAGCCATCAATT-ACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCAAAAGATTAGTTACTC
*
15255148 ACGTTAAATG
127 ACTTTAAATG
15255158 GCTTTATGAT
Statistics
Matches: 2530, Mismatches: 490, Indels: 332
0.75 0.15 0.10
Matches are distributed among these distances:
157 1 0.00
158 3 0.00
159 168 0.07
160 69 0.03
161 4 0.00
162 5 0.00
163 2 0.00
164 2 0.00
165 7 0.00
166 96 0.04
167 43 0.02
168 15 0.01
169 358 0.14
170 717 0.28
171 692 0.27
172 316 0.12
173 17 0.01
174 6 0.00
175 3 0.00
176 3 0.00
177 1 0.00
180 2 0.00
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.38
Consensus pattern (156 bp):
TTTTTTTTCATTTTTTGTTAAAACAAACATAATTTGATGTTTGCATTGGGAAACTTGAAGCGAAA
GCCATCAATTACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCAAAAGATTAGTTACTCACTT
TAAATGATTTATAACTTTAAAAATGA
Found at i:15256709 original size:39 final size:40
Alignment explanation
Indices: 15256656--15256742 Score: 131
Period size: 42 Copynumber: 2.1 Consensus size: 40
15256646 ACCATCCCAC
* *
15256656 CATCATCAGCTCATGTGCACT-ACTCGCACATAGTTAGGT
1 CATCATCAGCTCATGTGCACTCACACGCACATAGCTAGGT
15256695 CATCATCAGCTCATGTGCACTCCCACACGCACATAGCTAGGT
1 CATCATCAGCTCATGTGCACT--CACACGCACATAGCTAGGT
15256737 CATCAT
1 CATCAT
15256743 TATCACACAA
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
39 21 0.49
42 22 0.51
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.25
Consensus pattern (40 bp):
CATCATCAGCTCATGTGCACTCACACGCACATAGCTAGGT
Found at i:15258280 original size:172 final size:171
Alignment explanation
Indices: 15257994--15261390 Score: 2228
Period size: 170 Copynumber: 19.5 Consensus size: 171
15257984 GGTCTCACAA
* * * * *
15257994 AAACATGAAGCGAAAGCCATCCATTGACAA-AAAAGGTCCATTTGTAGTCACTCATGCCTTCGGA
1 AAACGTGAAGCAAAAGCCATCCATTGACAAGAAAA-GTCCATTTATAGTCACTCATGCCTTTGAA
* * ** *
15258058 AGCCTAATTACTCGTTTTATATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTGTTTTT
65 AGACTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTT-TTTTT
* * * *
15258123 CATTTTTGGCTAAAACATATCATAATTGCATGTTTGTCTCTAG
129 CATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTCTAG
* * * * * * * * *
15258166 AAACATGAAGCAAAATCGATCTATTGACAATAAAGGTCCATTTATAATCGCTCATGCCTTCGAAA
1 AAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAA
* * ** *
15258231 AACTAGTTACTCACTTGAAATACTTTTGTAATCTTATAAATGATTTTAAGTTGAA-TTTTTTTCA
66 GACTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCA
* * *
15258295 TTTTTGGTTAAAACATAACATAA-TGTGATGTTTTCCTC-ACG
131 TTTTTGGTTAAAACAGATCATAATTG-GATGTTTGCCTCTA-G
* ** * *
15258336 AAACGTGAAGCGAAAGCCATCCATTTCCAAGAAGAA-TCCATTCATATTCACCTACA--CCTTTG
1 AAACGTGAAGCAAAAGCCATCCATTGACAAGAA-AAGTCCATTTATAGTCA-CT-CATGCCTTTG
* * * * * * * *
15258398 AAAAACTAGTTATTCA-TTTAAAT-GTGTTTGTAATATTATAAATCATGTTAAGCTGAATTATTT
63 AAAGACTAGTTACTCACTTTAAATGGT-TTTATAATCTTATAAATGATTTTAAGTTGAATTTTTT
* * *
15258461 TTCTTTTTTGGTTAAAACTGATCATAATTTGATGTTTGCCT-TGAG
127 TTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTCT-AG
* ** * * *
15258506 AAATGTGAAGTGAAAGCCATCTATTAACAAGAAAGGTCCATTTATAGTCACTCATGCCTTTGAAA
1 AAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAA
* * * ** *
15258571 GAATAGTTACTGACTTTAAATGGATTTATAATCTTATAAATGATTTTAAGAAGAATTGTTTTTCA
66 GACTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCA
* * *
15258636 TTTTTGATTAAAATAGATCATAATTGGATATTTGCCT-TAAG
131 TTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTCT-AG
*
15258677 AAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTAT--T---TCATGCCTTCGAAA
1 AAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAA
* * * * * * *
15258737 AACTAGTTACGCCCTTTAAATAGATTTATAATCTTATAAATGATTTTATGTTGAAGTTTTTTTCA
66 GACTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCA
* * * *
15258802 TTTTTGTTTAAAATAGATCATAATTGGATGTTTGCATTTAG
131 TTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTCTAG
** * * *
15258843 AAAAATGAAGTGAAAA-CCATCAATTGACAAGAAAAGTCCATTTATAGTCATTCATGCCTTTGAA
1 AAACGTGAAG-CAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAA
* * * *
15258907 AGCCTAATTACTCACTTTAAATGGTTTTATAATCTTATAAATGACTTTAAGTTGAACTTGGTTTT
65 AGACTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA-TT-TTTTT
* * * * *
15258972 TCATTTTTTTAGCTAAAACAGATCATAATTGGATGATAGCCT-TGGG
128 TCA--TTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTCT-AG
* ** **
15259018 AAACGTAAAGTGAAAGCCATCCATTGACAAGAAAAGTTTATTTATAGTCACTCATGCCTTTGAAA
1 AAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAA
* * * * * *
15259083 GCCTAGTTGCTCGCTTTAAATGATTTTATAA-CTTTAAAAATGATTAT-AGATTGAATTTTTTTT
66 GACTAGTTACTCACTTTAAATGGTTTTATAATC-TTATAAATGATTTTAAG-TTGAA-TTTTTTT
* * * ** *
15259146 TCATTTTTTGTTAAAATAGATCATAATTTGG-TCTTT-TATATTAGG
128 TCATTTTTGGTTAAAACAGATCATAA-TTGGATGTTTGCCT-CTA-G
* * * * * * * * * *
15259191 GAACGTGAAACAAAATCTATCAATTGACAAGAAAATTTCA-TTATAGTTACTCATGCCATCGAAA
1 AAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAA
* ** * * *
15259255 G-CTTAGTTACTCGCTTTAGGT-GATTTATAA-CTT-TAAAATCATTTTAAATTGAATTTTTTTT
66 GAC-TAGTTACTCACTTTAAATGGTTTTATAATCTTAT-AAATGATTTTAAGTTGAATTTTTTTT
* * * * * ** * *
15259316 -ATTTTCTTG-TAAAACAAAACTTCATTTAATGTTTG-CTTTGGG
129 CATTTT-TGGTTAAAACAGATCATAATTGGATGTTTGCCTCT-AG
* * * * *
15259358 AAACCTGAAGCAAAATCCATCAATTGATAAGAAAAGTCCATTTATATTCACTCATGCCTTTGAAA
1 AAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAA
* * *
15259423 GACTAGTTACTCACTTTAAATGGTTTTCTAATCTTGTAAATGATTTTAAGTTGAATCTGTTTTTC
66 GACTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAAT-TTTTTTTC
* * *
15259488 ATTTTTGGCTAAAACAGATCATAATTGGATGTTTGTCTCAAG
130 ATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTCTAG
* * * *
15259530 AAACGTAAAGCAAAAGCCATCCATTGACAAGAAATGTCCATTTATAGTCACTAATGCCTTTGGAA
1 AAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAA
* ** * *
15259595 GGCTAGTTACTTGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAACTTGAGTGTTTTTTT-
66 GACTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAAT-TTTTTTTC
* * * *
15259659 ATCTTTGGCTAAAATAGATCATAATTGGATGTTTGCCTCGAG
130 ATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTCTAG
** * * *
15259701 AAACGTGAAGTGAATGCCATCCATTTG-CAAGAAAAGTCCATTTATAGTCACTCATACCTTTAAA
1 AAACGTGAAGCAAAAGCCATCCA-TTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAA
* * * *
15259765 AGCCTAATTACTCATTTTAAATGGTTTTATAATCTTATAAATGATTTTAATTTGAACCTTTTTTT
65 AGACTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA--TTTTTTT
* * *
15259830 TAATTTTTGGCTAAAACATATCATAATTGGATGTTTGCCTCTAG
128 TCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTCTAG
* * * *
15259874 AAATGTCAAGCAAAAGACATCCATTGACAAGAAATGTCCATTTATAGTCACTCATG-CTTTAGAA
1 AAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTT-GAA
** ** * *
15259938 AGACTAGTTACTCTTTTTAAATGCCTTTATAATCTTATAAATGATTTGAAGTTG-ATTTATTTTC
65 AGACTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTC
* * * *
15260002 ATGTTTGGTTAAAACAGATCATAA-TGTGATATTTTCCTCGAG
130 ATTTTTGGTTAAAACAGATCATAATTG-GATGTTTGCCTCTAG
* ** ** * * * *
15260044 AAATGTGAAGTGAAAGTTATCCATTTG-TAAGAAAACTCCATTTATAGTCACTTATACCTTTGAA
1 AAACGTGAAGCAAAAGCCATCCA-TTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAA
* * * * *
15260108 AGACTAGTTATTCGCTTGAAATGGTTTTATAATCTTATAAATCATTTTAAGCTG-ATTTTTTTTC
65 AGACTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTT-
* * *
15260172 CATTTTTGGTTAAAACAGTTCATAGTTAGATGTTTGCCT-TAGG
129 CATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTCTA-G
* ** * * **
15260215 AAATGTGAAGTGAAAGCCATCTATTGACAAGAAAAGTCCATTTATAGTCACTCATGCATCGGGAA
1 AAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCT-TTGAA
* * * * *
15260280 ATGTGAAGCAAAATT-CATC-CATTGAGAA-GAAAAGTCCATTTATAGTC--AGT-AATGCCTTC
65 A---G-A-C-TAGTTAC-TCAC-TTTA-AATG----GT---TTTATAATCTTA-TAAATG-ATT-
** * * * ** * ** * * *
15260339 GAAAGGCT-AATTACTCATGTTAAATGATTTTATAACTTTACAAA-TGATTTTAAGTAGAATTTT
111 TTAA-GTTGAATT--T--T-TT--TTCATTTT-T--GGTTA-AAACAGATCATAA-TTGGA--TG
* * * *
15260402 TTTTCATTTTTTG
161 TTTGC--CTCTAG
* ** * * * * * ** *** * *
15260415 TTAAAACAT-ATCA-CAATTG-GAT--GTTAGCCTCACGAAACGTGAAGCGAAAATCA-TCTATT
1 ---AAACGTGA--AGCAAAAGCCATCCATT-G--ACAAGAAAAGTCCATTTATAGTCACTC-A-T
* ** * * * *
15260474 GAC-AAGAAAAGTCATTTACAGTCACTCATGCCTTCGAAA-GTGTAATTACTCACTTTAAGTGAT
56 GCCTTTG-AAAG--A-CT--AGTTACTCA---CTT-TAAATG-GT--TT--T-A---TAA-T-CT
* * * * **
15260537 TTTATAACTTTGAAAATTGTTATAAATTGAA-ATTTTTTCATTTTTTGTTAAAACTTATCATAAT
100 T--ATAA--ATG---A-T-TT-TAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAAT
* * * *
15260601 TTGATCTTTTGCAT-TGGG
155 TGGAT-GTTTGCCTCT-AG
* * * * * * * * * **
15260619 AAACTTGAAACGAAAGCCAACAATTTACAAGAAAATTTCATTTATAGTTACTCATGCCTCCGAAA
1 AAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAA
* * * * * *
15260684 G-CTTAGTTACTCGCTTTAAGT-GATTTATAA-CTTAAAAAATGATTTTAAATGGAATTTTTTTT
66 GAC-TAGTTACTCACTTTAAATGGTTTTATAATCTT-ATAAATGATTTTAAGTTGAATTTTTTTT
* * * * *
15260746 CATTTTTTGTTCAAACAGAACATAATTTGATGTTTG-CTTTAGG
129 CATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTCTA-G
* * * * * *
15260789 AAACCTAAAGCGAAATCCATCAATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTTGAAA
1 AAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAA
* * *
15260854 GACTAATTACTCTCTTTAAATGGATTTATAATCTTATAAATGATTTTAAGTTG-ATTTTTTTTCA
66 GACTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCA
* * * * *
15260918 CTTTTGATTAAAACATACCATAATTGGATGTTTGCGCT-GAG
131 TTTTTGGTTAAAACAGATCATAATTGGATGTTTGC-CTCTAG
* ** * * *
15260959 AAACGTTAAGTGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCATTGATGCTTTTGAAA
1 AAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAA
* * * ** * * *
15261024 AACTAGTTGCTCGCTTTAGGTAGTTTTATAACCTTATCAATGATTTTAAGTTGAATTTTTTTTCA
66 GACTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCA
** * * * * * *
15261089 TTCCCT-ATTGAAACATATCATAATTGAATGTTAGCCTCAAG
131 TT-TTTGGTTAAAACAGATCATAATTGGATGTTTGCCTCTAG
* * * *
15261130 AAACGTGTAGCGAAAGCCAGCCATTGACAAGTAAAGTCCA-TTATAGTCACTCATGCCTTTGAAA
1 AAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAA
* * *
15261194 GACTAATTACTCACTTTAAATGGTTTTATAATCTTGTAAATAATTTTAAGTTG-A-TTTTTTTCA
66 GACTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCA
* * * * * * *
15261257 TTTTGGGCTATAACTGATCACAATTGGATGTTTTCCTCGAG
131 TTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTCTAG
* * *
15261298 AAACGTGAAGCGAAAGCCATCCAATGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTGGAAA
1 AAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAA
* *
15261363 GACTAGTTGCTCACTTTAAATAGTTTTA
66 GACTAGTTACTCACTTTAAATGGTTTTA
15261391 AGTTGAATTT
Statistics
Matches: 2531, Mismatches: 525, Indels: 341
0.75 0.15 0.10
Matches are distributed among these distances:
166 139 0.05
167 43 0.02
168 131 0.05
169 111 0.04
170 655 0.26
171 559 0.22
172 327 0.13
173 181 0.07
174 14 0.01
175 129 0.05
176 3 0.00
177 2 0.00
178 13 0.01
179 4 0.00
182 5 0.00
183 4 0.00
184 3 0.00
185 11 0.00
186 7 0.00
188 3 0.00
190 2 0.00
191 4 0.00
192 8 0.00
193 2 0.00
195 14 0.01
196 5 0.00
197 1 0.00
198 5 0.00
200 13 0.01
201 28 0.01
202 16 0.01
203 27 0.01
204 8 0.00
205 6 0.00
206 8 0.00
207 7 0.00
208 10 0.00
210 1 0.00
211 6 0.00
212 1 0.00
213 4 0.00
214 1 0.00
215 2 0.00
216 1 0.00
218 2 0.00
219 5 0.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (171 bp):
AAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAA
GACTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCA
TTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTCTAG
Found at i:15258403 original size:170 final size:168
Alignment explanation
Indices: 15257994--15260269 Score: 1960
Period size: 171 Copynumber: 13.3 Consensus size: 168
15257984 GGTCTCACAA
* * * * *
15257994 AAACATGAAGCGAAAGCCATCCATTGACAA-AAAAGGTCCATTTGTAGTCACTCATGCCTTCGGA
1 AAACGTGAAGCAAAAGCCATCCATTGACAAGAAAA-GTCCATTTATAGTCACTCAT-CCTTTGAA
** * ** *
15258058 AGCCTAATTACTCGTTTTATATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTGTTTTT
64 AAACTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA-TT-TTTTT
* * * *
15258123 CATTTTTGGCTAAAACATATCATAATTGCATGTTTGTCTCTAG
127 CATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTC-AG
* * * * * * * * *
15258166 AAACATGAAGCAAAATCGATCTATTGACAATAAAGGTCCATTTATAATCGCTCATGCCTTCGAAA
1 AAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT-CCTTTGAAA
* ** *
15258231 AACTAGTTACTCACTTGAAATACTTTTGTAATCTTATAAATGATTTTAAGTTGAATTTTTTTCAT
65 AACTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTCAT
* * *
15258296 TTTTGGTTAAAACATAACATAA-TGTGATGTTTTCCTCACG
130 TTTTGGTTAAAACAGATCATAATTG-GATGTTTGCCTCA-G
* ** * *
15258336 AAACGTGAAGCGAAAGCCATCCATTTCCAAGAAGAA-TCCATTCATATTCACCTACA-CCTTTGA
1 AAACGTGAAGCAAAAGCCATCCATTGACAAGAA-AAGTCCATTTATAGTCA-CT-CATCCTTTGA
* * * * * *
15258399 AAAACTAGTTATTCA-TTTAAAT-GTGTTTGTAATATTATAAATCATGTTAAGCTGAATTATTTT
63 AAAACTAGTTACTCACTTTAAATGGT-TTTATAATCTTATAAATGATTTTAAGTTGAATT-TTTT
* * * *
15258462 TCTTTTTTGGTTAAAACTGATCATAATTTGATGTTTGCCTTGAG
126 TCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCC-TCAG
* ** * * *
15258506 AAATGTGAAGTGAAAGCCATCTATTAACAAGAAAGGTCCATTTATAGTCACTCATGCCTTTGAAA
1 AAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT-CCTTTGAAA
* * **
15258571 GAA-TAGTTACTGACTTTAAATGGATTTATAATCTTATAAATGATTTTAAGAAGAATTGTTTTTC
65 -AACTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATT-TTTTTC
* * * *
15258635 ATTTTTGATTAAAATAGATCATAATTGGATATTTGCCTTAAG
128 ATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCC-TCAG
*
15258677 AAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTAT--T---TCATGCCTTCGAAA
1 AAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT-CCTTTGAAA
* * * * *
15258737 AACTAGTTACGCCCTTTAAATAGATTTATAATCTTATAAATGATTTTATGTTGAAGTTTTTTTCA
65 AACTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA-TTTTTTTCA
* * * *
15258802 TTTTTGTTTAAAATAGATCATAATTGGATGTTTGCATTTAG
129 TTTTTGGTTAAAACAGATCATAATTGGATGTTTGC-CTCAG
** * * *
15258843 AAAAATGAAGTGAAAA-CCATCAATTGACAAGAAAAGTCCATTTATAGTCATTCATGCCTTTGAA
1 AAACGTGAAG-CAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT-CCTTTGAA
** * *
15258907 AGCCTAATTACTCACTTTAAATGGTTTTATAATCTTATAAATGACTTTAAGTTGAACTTGGTTTT
64 AAACTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA-TT--TTTT
* * * * **
15258972 TCATTTTTTTAGCTAAAACAGATCATAATTGGATGATAGCCTTGGG
126 TCA--TTTTTGGTTAAAACAGATCATAATTGGATGTTTGCC-TCAG
* ** **
15259018 AAACGTAAAGTGAAAGCCATCCATTGACAAGAAAAGTTTATTTATAGTCACTCATGCCTTTGAAA
1 AAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT-CCTTTGAAA
** * * * * *
15259083 GCCTAGTTGCTCGCTTTAAATGATTTTATAA-CTTTAAAAATGATTAT-AGATTGAATTTTTTTT
65 AACTAGTTACTCACTTTAAATGGTTTTATAATC-TTATAAATGATTTTAAG-TTGAA--TTTTTT
* * * *** *
15259146 TCATTTTTTGTTAAAATAGATCATAATTTGG-TCTTTTATATTAGG
126 TCATTTTTGGTTAAAACAGATCATAA-TTGGAT-GTTTGCCTCA-G
* * * * * * * * * *
15259191 GAACGTGAAACAAAATCTATCAATTGACAAGAAAATTTCA-TTATAGTTACTCATGCCATCG-AA
1 AAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT-CCTTTGAAA
* * ** * * * *
15259254 AGCTTAGTTACTCGCTTTAGGT-GATTTATAA-CTT-TAAAATCATTTTAAATTGAATTTTTTTT
65 AAC-TAGTTACTCACTTTAAATGGTTTTATAATCTTAT-AAATGATTTTAAGTTGAATTTTTTTC
* * * * * ** * **
15259316 ATTTTCTTG-TAAAACAAAACTTCATTTAATGTTTGCTTTGGG
128 ATTTT-TGGTTAAAACAGATCATAATTGGATGTTTGC-CTCAG
* * * * *
15259358 AAACCTGAAGCAAAATCCATCAATTGATAAGAAAAGTCCATTTATATTCACTCATGCCTTTGAAA
1 AAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT-CCTTTGAAA
* * *
15259423 GACTAGTTACTCACTTTAAATGGTTTTCTAATCTTGTAAATGATTTTAAGTTGAATCTGTTTTTC
65 AACTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAAT-T-TTTTTC
* *
15259488 ATTTTTGGCTAAAACAGATCATAATTGGATGTTTGTCTCAAG
128 ATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTC-AG
* * * *
15259530 AAACGTAAAGCAAAAGCCATCCATTGACAAGAAATGTCCATTTATAGTCACTAATGCCTTTGGAA
1 AAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT-CCTTTGAAA
** ** * * *
15259595 GGCTAGTTACTTGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAACTTGAGTGTTTTTTTA
65 AACTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAAT-TTTTTTCA
* * *
15259660 TCTTTGGCTAAAATAGATCATAATTGGATGTTTGCCTCGAG
129 TTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTC-AG
** *
15259701 AAACGTGAAGTGAATGCCATCCATTTG-CAAGAAAAGTCCATTTATAGTCACTCATACCTTT-AA
1 AAACGTGAAGCAAAAGCCATCCA-TTGACAAGAAAAGTCCATTTATAGTCACTCAT-CCTTTGAA
* * * *
15259764 AAGCCTAATTACTCATTTTAAATGGTTTTATAATCTTATAAATGATTTTAATTTGAACCTTTTTT
64 AA-ACTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA---TTTTT
* * *
15259829 TTAATTTTTGGCTAAAACATATCATAATTGGATGTTTGCCTCTAG
125 TTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTC-AG
* * * * *
15259874 AAATGTCAAGCAAAAGACATCCATTGACAAGAAATGTCCATTTATAGTCACTCATGCTTTAGAAA
1 AAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATCCTTT-GAAA
* ** ** *
15259939 GACTAGTTACTCTTTTTAAATGCCTTTATAATCTTATAAATGATTTGAAGTTG-ATTTATTTTCA
65 AACTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTT-TTTTCA
* * *
15260003 TGTTTGGTTAAAACAGATCATAA-TGTGATATTTTCCTCGAG
129 TTTTTGGTTAAAACAGATCATAATTG-GATGTTTGCCTC-AG
* ** ** * * *
15260044 AAATGTGAAGTGAAAGTTATCCATTTG-TAAGAAAACTCCATTTATAGTCACTTATACCTTTGAA
1 AAACGTGAAGCAAAAGCCATCCA-TTGACAAGAAAAGTCCATTTATAGTCACTCAT-CCTTTGAA
* * * * * * *
15260108 AGACTAGTTATTCGCTTGAAATGGTTTTATAATCTTATAAATCATTTTAAGCTGATTTTTTTTCC
64 AAACTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTT-C
* * * *
15260173 ATTTTTGGTTAAAACAGTTCATAGTTAGATGTTTGCCTTAGG
128 ATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTCA-G
* ** *
15260215 AAATGTGAAGTGAAAGCCATCTATTGACAAGAAAAGTCCATTTATAGTCACTCAT
1 AAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT
15260270 GCATCGGGAA
Statistics
Matches: 1720, Mismatches: 315, Indels: 139
0.79 0.14 0.06
Matches are distributed among these distances:
165 2 0.00
166 137 0.08
167 45 0.03
168 60 0.03
169 60 0.03
170 359 0.21
171 429 0.25
172 304 0.18
173 179 0.10
174 17 0.01
175 126 0.07
176 2 0.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (168 bp):
AAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATCCTTTGAAAA
ACTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTCATT
TTTGGTTAAAACAGATCATAATTGGATGTTTGCCTCAG
Found at i:15260472 original size:234 final size:233
Alignment explanation
Indices: 15260072--15260504 Score: 554
Period size: 234 Copynumber: 1.9 Consensus size: 233
15260062 ATCCATTTGT
* * * * *
15260072 AAGAAAACTCCATTTATAGTCACTTATACCTTTGAAAGACTAGTTATTCGCTTGAAATGGTTTTA
1 AAGAAAACTCCATTTATAGTCACTAATACCTTCGAAAGACTAATTACTCGCTTGAAATGATTTTA
* * *
15260137 TAATCTTATAAATCATTTTAAGCTGATTTTTTTTCCATTTTTGGTTAAAACAGTTCATAGTTAGA
66 TAATCTTACAAATCATTTTAAGCTGATTTTTTTTCCATTTTTGGTTAAAACAGTTCACAATTAGA
* * * * * * *
15260202 TGTTTGCCTTAGGAAATGTGAAGTGAAAGCCATCTATTGACAAGAAAAGTCCATTTATAGTCACT
131 TGTTAGCCTCACGAAACGTGAAGCGAAAACCATCTATTGACAAGAAAAGT-CATTTACAGTCACT
15260267 CATGCATCGGGAAATGTGAAGCAAAATTCATCCATTGAG
195 CATGCATCGGGAAATGTGAAGCAAAATTCATCCATTGAG
* * * *
15260306 AAGAAAAGTCCATTTATAGTCAGTAATGCCTTCGAAAGGCTAATTACTCATG-TT-AAATGATTT
1 AAGAAAACTCCATTTATAGTCACTAATACCTTCGAAAGACTAATTACTC--GCTTGAAATGATTT
* *
15260369 TATAA-CTTTACAAATGATTTTAAG-TAGAATTTTTTTT-CATTTTTTGTTAAAACA-TATCACA
64 TATAATC-TTACAAATCATTTTAAGCT-G-ATTTTTTTTCCATTTTTGGTTAAAACAGT-TCACA
* *
15260430 ATTGGATGTTAGCCTCACGAAACGTGAAGCGAAAATCATCTATTGACAAGAAAAGTCATTTACAG
125 ATTAGATGTTAGCCTCACGAAACGTGAAGCGAAAACCATCTATTGACAAGAAAAGTCATTTACAG
15260495 TCACTCATGC
190 TCACTCATGC
15260505 CTTCGAAAGT
Statistics
Matches: 170, Mismatches: 23, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
233 21 0.12
234 137 0.81
235 11 0.06
236 1 0.01
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (233 bp):
AAGAAAACTCCATTTATAGTCACTAATACCTTCGAAAGACTAATTACTCGCTTGAAATGATTTTA
TAATCTTACAAATCATTTTAAGCTGATTTTTTTTCCATTTTTGGTTAAAACAGTTCACAATTAGA
TGTTAGCCTCACGAAACGTGAAGCGAAAACCATCTATTGACAAGAAAAGTCATTTACAGTCACTC
ATGCATCGGGAAATGTGAAGCAAAATTCATCCATTGAG
Found at i:15260651 original size:170 final size:169
Alignment explanation
Indices: 15260295--15266464 Score: 2206
Period size: 171 Copynumber: 36.3 Consensus size: 169
15260285 AAGCAAAATT
* * * *
15260295 CATCCATTGAGAAGAAAAGTCCATTTATAGTCAGTAATGCCTTCGAAAG-GCTAATTACTCA-TG
1 CATCAATTGACAAGAAAAGT-CATTTATAGTCACTCATGCCTTCGAAAGTG-TAATTACTCACT-
* *
15260358 TTAAATGATTTTATAACTTTACAAATGATTTTAAGTAGAATTTTTTTTCATTTTTTGTTAAAACA
63 TTAAGTGATTTTATAACTTTA-AAATGATTTTAAATAGAATTTTTTTTCATTTTTTGTTAAAACA
* * * * * * * * *
15260423 TATCACAATTGGATGTTAGCCTCACGAAACGTGAAGCGAAAAT
127 TATCATAATTTGATGTTTGCATTAGGAAACCTGAAACGAAAAC
* *
15260466 CATCTATTGACAAGAAAAGTCATTTACAGTCACTCATGCCTTCGAAAGTGTAATTACTCACTTTA
1 CATCAATTGACAAGAAAAGTCATTTATAGTCACTCATGCCTTCGAAAGTGTAATTACTCACTTTA
* * * *
15260531 AGTGATTTTATAACTTTGAAAATTG-TTATAAATTGAA-ATTTTTTCATTTTTTGTTAAAACTTA
66 AGTGATTTTATAACTTT-AAAA-TGATTTTAAATAGAATTTTTTTTCATTTTTTGTTAAAACATA
* * * *
15260594 TCATAATTTGATCTTTTGCATTGGGAAACTTGAAACGAAAGC
129 TCATAATTTGAT-GTTTGCATTAGGAAACCTGAAACGAAAAC
* * * * * * *
15260636 CAACAATTTACAAGAAAATTTCATTTATAGTTACTCATGCCTCCGAAAGCT-TAGTTACTCGCTT
1 CATCAATTGACAAGAAAA-GTCATTTATAGTCACTCATGCCTTCGAAAG-TGTAATTACTCACTT
* * * *
15260700 TAAGTGA-TTTATAACTTAAAAAATGATTTTAAATGGAATTTTTTTTCATTTTTTGTTCAAACAG
64 TAAGTGATTTTATAACTT-TAAAATGATTTTAAATAGAATTTTTTTTCATTTTTTGTTAAAACAT
* * *
15260764 AACATAATTTGATGTTTGCTTTAGGAAACCT-AAAGCGAAATC
128 ATCATAATTTGATGTTTGCATTAGGAAACCTGAAA-CGAAAAC
* ** *
15260806 CATCAATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTTGAAAGACTAATTACTCTCTTT
1 CATCAATTGACAAGAAAAG-TCATTTATAGTCACTCATGCCTTCGAAAGTGTAATTACTCACTTT
* * * *
15260871 AAATGGA-TTTATAA-TCTTATAAATGATTTTAAGTTG-ATTTTTTTTCA-CTTTTGATTAAAAC
65 AAGT-GATTTTATAACT-TTA-AAATGATTTTAAATAGAATTTTTTTTCATTTTTTG-TTAAAAC
* * ** * * ** *
15260932 ATACCATAATTGGATGTTTGCGCT-GAGAAACGTTAAGTGAAAGC
126 ATATCATAATTTGATGTTTGCATTAG-GAAACCTGAAACGAAAAC
* * * * * *** * * *
15260976 CATCCATTGACAAGAAAAGTCCATTTATAGTCATTGATGCTTTTGAAAAACTAGTTGCTCGCTTT
1 CATCAATTGACAAGAAAAGT-CATTTATAGTCACTCATGCCTTCGAAAGTGTAATTACTCACTTT
* * * * * *** * *
15261041 AGGT-AGTTTTATAACCTTATCAATGATTTTAAGTTGAATTTTTTTTCATTCCCTATTGAAACAT
65 AAGTGA-TTTTATAACTTTA-AAATGATTTTAAATAGAATTTTTTTTCATTTTTTGTTAAAACAT
* * * * * * * *
15261105 ATCATAA-TTGAATGTTAGCCTCAAGAAACGTGTAGCGAAAGC
128 ATCATAATTTG-ATGTTTGCATTAGGAAACCTGAAACGAAAAC
* * * * **
15261147 CAGCCATTGACAAGTAAAGTCCA-TTATAGTCACTCATGCCTTTGAAAGACTAATTACTCACTTT
1 CATCAATTGACAAGAAAAGT-CATTTATAGTCACTCATGCCTTCGAAAGTGTAATTACTCACTTT
* * * * * ** * *
15261211 AAATGGTTTTATAATCTTGT-AAATAATTTTAAGTTG-A-TTTTTTTCATTTTGGGCTATAAC-T
65 AAGTGATTTTATAA-CTT-TAAAATGATTTTAAATAGAATTTTTTTTCATTTTTTGTTAAAACAT
* * * * * * * *
15261272 GATCACAATTGGATGTTTTC-CTCGAGAAACGTGAAGCGAAAGC
128 -ATCATAATTTGATGTTTGCATTAG-GAAACCTGAAACGAAAAC
* ** * *
15261315 CATCCAA-TGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTGGAAAGACTAGTTGCTCACTT
1 CAT-CAATTGACAAGAAAAGT-CATTTATAGTCACTCATGCCTTCGAAAGTGTAATTACTCACTT
* *
15261379 TAA---A---TAGT---TTT--AA-G---TTGAAT----TTTTTTTTCATTTTTGGTTAAAACAT
64 TAAGTGATTTTA-TAACTTTAAAATGATTTTAAATAGAATTTTTTTTCATTTTTTGTTAAAACAT
** * * * * ** **
15261425 ATTGTAATTGGATGTTTGCCTT-GAGACACGTGAAGTGAATGC
128 ATCATAATTTGATGTTTGCATTAG-GAAACCTGAAACGAAAAC
** * * * ** *
15261467 CATCCGTTTG-CAAGCAAAGTCCAGTTATAGTCACTCATGCCTTCGAAGGACTAGTTACTCACTT
1 CAT-CAATTGACAAGAAAAGT-CATTTATAGTCACTCATGCCTTCGAAAGTGTAATTACTCACTT
* * * * * * ** * * * *
15261531 TAAATGGTTTTATCATCTTGT-AAATAATCTTAAGTTTACTTTTTTTTTCATTTTTGGCTAAAAT
64 TAAGTGATTTTAT-AACTT-TAAAATGATTTTAAATAGA-ATTTTTTTTCATTTTTTGTTAAAAC
* * * * * * ** *
15261595 AGATCATAATTGGATGTTAGCCTTAAGAAACGTGAAGTGAAAGC
126 ATATCATAATTTGATGTTTGCATTAGGAAACCTGAAACGAAAAC
** * * * ** * *
15261639 CATCCCTTGACAAGAAAAGTCCATTTATAGTCAATAATGCCTTCAAAAGACTAGTTACTCACATT
1 CATCAATTGACAAGAAAAGT-CATTTATAGTCACTCATGCCTTCGAAAGTGTAATTACTCACTTT
* * * ** * * * * * *
15261704 AAATGGTTTTATGA-TCTTATGTATGATTTTAAGTTGAATTGTTTTTCATTTTTGGTTAAGACAG
65 AAGTGATTTTATAACT-TTA-AAATGATTTTAAATAGAATTTTTTTTCATTTTTTGTTAAAACAT
** * * * *
15261768 ATCATAATCAGATGTTTGC-CTAGGGAAACGTGAAGC-AAAAGT
128 ATCATAATTTGATGTTTGCATTA-GGAAACCTGAAACGAAAA-C
* * * * ** * *
15261810 CATCCATTAAGAAGAAAAGTTCATTTATAGTCACTCATGCCTTAGAAAGACTAGTTATTCACTTT
1 CATCAATTGACAAGAAAAG-TCATTTATAGTCACTCATGCCTTCGAAAGTGTAATTACTCACTTT
* * * * * * ** *
15261875 AAATGGTTTTAT-AGTCTCATAAATGATTTTAAGTTGAATTTTTTTTC-TTGTTTCATTAAAAAA
65 AAGTGATTTTATAACT-TTA-AAATGATTTTAAATAGAATTTTTTTTCATT-TTTTGTTAAAACA
* * * * * ** *
15261938 GATCATAATTGGATGTTTACCTTAGGAAACATGAGGCGAAAGC
127 TATCATAATTTGATGTTTGCATTAGGAAACCTGAAACGAAAAC
* * ** * *
15261981 CATCCATTGACAAGAAAAGTTCATTTATAGTCACTTATGCCTTCGAAAGACTAGTTACTCACATT
1 CATCAATTGACAAGAAAAG-TCATTTATAGTCACTCATGCCTTCGAAAGTGTAATTACTCACTTT
* * ** * * * *
15262046 AAATGGTTTTATAATCTTGT-AAATGATTTTATGTTG-ATTTTTTTT-ATTTTTTATTGAAACAG
65 AAGTGATTTTATAA-CTT-TAAAATGATTTTAAATAGAATTTTTTTTCATTTTTTGTTAAAACAT
* * * * * * *
15262108 ATCATAATTGGATGTTTGCCTTGGGAGACGTGATA-TAAAAGC
128 ATCATAATTTGATGTTTGCATTAGGAAACCTGAAACGAAAA-C
* *
15262150 CATCTATTGACAAGAAAAGTCCATTTATCA-TCACTCATGCTTTCGAAAGTGTAATTACT-AGCT
1 CATCAATTGACAAGAAAAGT-CATTTAT-AGTCACTCATGCCTTCGAAAGTGTAATTACTCA-CT
* * * *
15262213 TTAAATGGTTTTATAAAC-TTATAAATGATTTTAAGCT--ATTTTTTTTTCATTTTTTGTTAAAA
63 TTAAGTGATTTTAT-AACTTTA-AAATGATTTTAA-ATAGAATTTTTTTTCATTTTTTGTTAAAA
* * * * * * *
15262275 CAAATCATAATTGGATGTTTTCCTTAAGAAACATG--CCGCAAAAGC
125 CATATCATAATTTGATGTTTGCATTAGGAAACCTGAAACG-AAAA-C
* * ** * *
15262320 CATCCATTGAC-AGAAAAAGTCCATTTATAGTCACTCATGGCTTCGAAAGACTAGTTACTCCCTT
1 CATCAATTGACAAG-AAAAGT-CATTTATAGTCACTCATGCCTTCGAAAGTGTAATTACTCACTT
* * * *
15262384 TAAAG-GGTTTTATAATCTTGT-AAATGATTTTAAGTTGAATTTGTTTTTCATTTTTAGTTAAAA
64 T-AAGTGATTTTATAA-CTT-TAAAATGATTTTAAATAGAATTT-TTTTTCATTTTTTGTTAAAA
* * * * * * ** * *
15262447 CAGATCATAATTGGATATTTGCCTCAAGG-AACGTGAAGTGAACAT
125 CATATCATAATTTGATGTTTGCAT-TAGGAAACCTGAAACGAAAAC
* ** * *
15262492 CATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGTGTTCGAAA-TACTAGTTACTCACTT
1 CATCAATTGACAAGAAAAGTC-ATTTATAGTCACTCATGCCTTCGAAAGT-GTAATTACTCACTT
* * * * * ** * * *
15262556 TAAATGGTTTTGTAA-TCTTATAACTGATTTCATGTTGAATTTTTATTCATTTTTAGTTAAAACA
64 TAAGTGATTTTATAACT-TTA-AAATGATTTTAAATAGAATTTTTTTTCATTTTTTGTTAAAACA
* * * * * * *
15262620 GATCATAATTGGATGTTTACCA-TGGGAAACGTGAAGCGAAAGC
127 TATCATAATTTGATGTTT-GCATTAGGAAACCTGAAACGAAAAC
* * * * * * * * * *
15262663 GATCCATTGATAAGAAAAGTCTATTTATTGTTACTAATG-CTTTGAAA-TACTAGTTACTCGCTT
1 CATCAATTGACAAGAAAAGTC-ATTTATAGTCACTCATGCCTTCGAAAGT-GTAATTACTCACTT
* * * * * * *
15262726 TAAATGGTTTTATAATCTTGT-AAATAATTTTAAGTTGAATTATTTTTTTATTTTTGGTTAAAAC
64 TAAGTGATTTTATAA-CTT-TAAAATGATTTTAAATAGAATT-TTTTTTCATTTTTTGTTAAAAC
* * * * ** ** *
15262790 AGATCATAATTAGATGTTTGCCTT-GCAAAAAGTGAAGTGAAAGC
126 ATATCATAATTTGATGTTTGCATTAG-GAAACCTGAAACGAAAAC
* * * ** * *
15262834 CATCCACTGACAAGAAAAGTCCATTTATTA-TCACTCATGCCTTTGAAAGACTAGTTACTCATTT
1 CATCAATTGACAAGAAAAGT-CATTTA-TAGTCACTCATGCCTTCGAAAGTGTAATTACTCACTT
* * * * * ** *
15262898 TAAATGGTTTTATAA-TCTAGTAAATGATTTTAAGTTGAATTGTTTTTTCATTTTGGGCTAAAAC
64 TAAGTGATTTTATAACTTTA--AAATGATTTTAAATAGAATT-TTTTTTCATTTTTTGTTAAAAC
* * * * * * *
15262962 GTATTATAATTGGATGCTTGCCTT-GGAAAACATGAAGC-AAAAGC
126 ATATCATAATTTGATGTTTGCATTAGG-AAACCTGAAACGAAAA-C
* * * * * * * * *
15263006 CATCCATTTACAAAAAAAGTCTATCTATCGTCACTCATG-CTTCGAAA-TACTAGTTACACGCTT
1 CATCAATTGACAAGAAAAGTC-ATTTATAGTCACTCATGCCTTCGAAAGT-GTAATTACTCACTT
* * * ** * * * * *
15263069 TAAATGGTTTTATAA-TCTTATAACTGATTTTATGTTGAATTTGTTTTCA-TTTTGGTGAAAATA
64 TAAGTGATTTTATAACT-TTA-AAATGATTTTAAATAGAATTTTTTTTCATTTTTTGTTAAAACA
* * * * * * * * * ** *
15263132 GATCCT-ATTAGATGTTTCCCTCAAGACACGTGAAGTGAAAGC
127 TATCATAATTTGATGTTTGCATTAGGAAACCTGAAACGAAAAC
* * ** * * *
15263174 CAT-ATATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGACTAGTTATTCGCTT
1 CATCA-ATTGACAAGAAAAGT-CATTTATAGTCACTCATGCCTTCGAAAGTGTAATTACTCACTT
* * * * * * *
15263238 TAAATGGTTTTATAA-TCTTATAAACGATCTTAAGTCA-AA-TTTTTTTCATTTTTGGCTAAAAC
64 TAAGTGATTTTATAACT-TTA-AAATGATTTTAAAT-AGAATTTTTTTTCATTTTTTGTTAAAAC
* * * * * * * **
15263300 AGATCATAATTGGATGTTAGCCTTGGGAAACGTGAAGCGAAATT
126 ATATCATAATTTGATGTTTGCATTAGGAAACCTGAAACGAAAAC
* * ** ** *
15263344 CATCAATTGAC-AGAAAAGTCTGTTTATAGTCACTCATGCCTTTG-AAGACTAGGTACTCGCGTT
1 CATCAATTGACAAGAAAAGTC-ATTTATAGTCACTCATGCCTTCGAAAGTGTAATTACTCAC-TT
* * * * * * * * *
15263407 CAA-TGGTTTTATAATTTTATAAGTGATTTTAAGTTGAATTTTTTTT-ATTTTTGGTTAAAATAG
64 TAAGTGATTTTATAACTTTA-AAATGATTTTAAATAGAATTTTTTTTCATTTTTTGTTAAAACAT
* * * * * * *
15263470 ATCATAATTGGATGTTTGCCTCAAGAAACATGAAGCGAAAGC
128 ATCATAATTTGATGTTTGCATTAGGAAACCTGAAACGAAAAC
* * ** * **
15263512 CATCCATTGACAAGAAAAGTCCATTTATATTCACTCATGCCTTCGAAAGAATAGTTACTTGCTTT
1 CATCAATTGACAAGAAAAGT-CATTTATAGTCACTCATGCCTTCGAAAGTGTAATTACTCACTTT
* * * * * * *
15263577 AAATGGTTTTATAA-TCTTATAAGTGATTTTAAGTTA-AATTTTTATTCATTTTTGGCTAAAACA
65 AAGTGATTTTATAACT-TTA-AAATGATTTTAA-ATAGAATTTTTTTTCATTTTTTGTTAAAACA
* * ** ** * * ** * *
15263640 GATGATAATTAAATGTTAACCTTAGAAAATGTGAAGC-AAAAGT
127 TATCATAATTTGATGTTTGCATTAGGAAACCTGAAACGAAAA-C
* * * ** ** * *
15263683 TATCCATTGACAAGAAAAGTCTATTTATAGTCACTTATGCCTTC-AAACGACTACGTGCTCGCTT
1 CATCAATTGACAAGAAAAGTC-ATTTATAGTCACTCATGCCTTCGAAA-GTGTAATTACTCACTT
* *** * * * * *
15263747 TAAATGGCGTTATAA-TCTTATAAATGACTTTAAGTTGAATTTTTTTTTTTAATTTTTGGTTAAA
64 TAAGTGATTTTATAACT-TTA-AAATGATTTTAAATAGAA---TTTTTTTTCATTTTTTGTTAAA
* * * * ** ** *
15263811 ACAGAT-AGTAATTGGATGTTTGCCTTGGGAAATATGAAGTGAAAGC
124 ACATATCA-TAATTTGATGTTTGCATTAGGAAACCTGAAACGAAAAC
* * * ** * ** * ** * **
15263857 CATCCATTGACAAAAAAAGTCCATTTATATTGGCTCACGTGTTCAAAAGACTACTTACTCGTTTT
1 CATCAATTGACAAGAAAAGT-CATTTATAGTCACTCATGCCTTCGAAAGTGTAATTACTCACTTT
* ** ** * * *
15263922 AAAT-AGTGCTATAA-TCTTATAAATGATTTTGAGTTA-AATTTTTTTTTAATTTTTGGTTAAAG
65 AAGTGA-TTTTATAACT-TTA-AAATGATTTT-AAATAGAA-TTTTTTTTCATTTTTTGTTAAAA
* * * * * * *
15263984 CAGATCATAATTGGATCTTTGCCTCT-GAAAACGTGAAGC-AAAAGC
125 CATATCATAATTTGATGTTTGCAT-TAGGAAACCTGAAACGAAAA-C
* * * ** * *
15264029 CATCAATTGACAAGAAAAGTCCATTTATATTCACTCATGCTTTTGAAAGAATAGTTACTCGCTTT
1 CATCAATTGACAAGAAAAGT-CATTTATAGTCACTCATGCCTTCGAAAGTGTAATTACTCACTTT
* ** * * * * *
15264094 AAATGATTTTATAA-TCTTATACGTGATTTTAAGTTGAATTTTCTTTCCTTTTTTGGGTAAAACA
65 AAGTGATTTTATAACT-TTA-AAATGATTTTAAATAGAATTTTTTTTCATTTTTT-GTTAAAACA
* * * * * * * *
15264158 GATGATAATTGGATGTTAGCCTCAAGAAACGC-GAAGC-AAAAGC
127 TATCATAATTTGATGTTTGCATTAGGAAAC-CTGAAACGAAAA-C
* * * * ** ** **
15264201 CATCCATTGACAAGAAAAGTCCATTTTTACTCATTCATGCCTTCGAAAGACTAGGTACTTGCTTT
1 CATCAATTGACAAGAAAAGT-CATTTATAGTCACTCATGCCTTCGAAAGTGTAATTACTCACTTT
* * * * ** * *
15264266 AAATGGTGTTATAA-TCTTATAAATGACTTT--A-AG--TTGATTTT--TTTTTTGTTAAAATAG
65 AAGTGATTTTATAACT-TTA-AAATGATTTTAAATAGAATTTTTTTTCATTTTTTGTTAAAACAT
* * * * * *
15264323 ATCATAATTGGATGTTTGCCTTGGGAAACGTGAAGC-AAAAA
128 ATCATAATTTGATGTTTGCATTAGGAAACCTGAAACGAAAAC
* * * * * * * ** *
15264364 CAACCATTGGCAAGAAAAGTCCATTTACATTTACTCATGCCTTTGAAAGAATAACTACTCACTTT
1 CATCAATTGACAAGAAAAGT-CATTTATAGTCACTCATGCCTTCGAAAGTGTAATTACTCACTTT
* * * * * * *
15264429 AAATGGTTTTATAATTTTATAAATGATTTTAAGTTGAATTTTTTTTC-TTTTTTGGCTAAAACAG
65 AAGTGATTTTATAACTTTA-AAATGATTTTAAATAGAATTTTTTTTCATTTTTT-GTTAAAACAT
* * * * * * **
15264493 ATTATAATTCT-ATGTTAGCCTTGGGAAACATGAAGCGAAAGG
128 ATCATAATT-TGATGTTTGCATTAGGAAACCTGAAACGAAAAC
* ** * * * *
15264535 CATCCATTGAGTAGAAAAGTCTACTTATAGTCACTCATGCCTTCTAAA-TGCTAGTTACTCGCTT
1 CATCAATTGACAAGAAAAGTC-ATTTATAGTCACTCATGCCTTCGAAAGTG-TAATTACTCACTT
* * * ** * *
15264599 TAAATGGTTTGATAA-TCTTATAAATGATTTTATGTTGAATTTGTTTTCATTTTTTGTTAAAACA
64 TAAGTGATTTTATAACT-TTA-AAATGATTTTAAATAGAATTTTTTTTCATTTTTTGTTAAAACA
* * * * * * *
15264663 GATCATACTTGGATGTTTGCCTCAGGAAACGTGAAACGAAAGC
127 TATCATAATTTGATGTTTGCATTAGGAAACCTGAAACGAAAAC
* * * ** *
15264706 CATCCATTGACAAGTAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGACTAGTTACTCACTTT
1 CATCAATTGACAAGAAAAGT-CATTTATAGTCACTCATGCCTTCGAAAGTGTAATTACTCACTTT
* * * * * * *
15264771 AAAT-AGTTTTCTAATCTTGT-AAATGATTTTAAGTTGAATTCTTTTTCCTTTTTGGTTAAAACA
65 AAGTGA-TTTTATAA-CTT-TAAAATGATTTTAAATAGAATTTTTTTTCATTTTTTGTTAAAACA
* * * * * *
15264834 TATCATAATTGGATGTTTGCCTCT-GGGAACGTGAAGCGAAAGC
127 TATCATAATTTGATGTTTGCAT-TAGGAAACCTGAAACGAAAAC
* * * * * * * * *
15264877 CATCCATTGATAAGAAAAGTCTGTTTATGGTCACTGATGTCTTTGAATG-GCTAATTACTCATTT
1 CATCAATTGACAAGAAAAGTC-ATTTATAGTCACTCATGCCTTCGAAAGTG-TAATTACTCACTT
* * * * * * * *
15264941 TAAATG-TTTTATAA-TCTTATAATTGATTTTAAGTTGAACCTTTTTTTCATTCTTTGCTAAAAT
64 TAAGTGATTTTATAACT-TTA-AAATGATTTTAAATAGAA-TTTTTTTTCATTTTTTGTTAAAAC
* * * * * ** * *
15265004 AGATCATAATTGGATGCTAGCACTAGGAAATGTGAAGCGAAAGC
126 ATATCATAATTTGATGTTTGCATTAGGAAACCTGAAACGAAAAC
* * * ** * * ** * * *
15265048 CATCCATTGACAAAAAAAGCCCATTTAT-GTCGGTAATTCCTTCGAAAGACTAGTTACTTACGTT
1 CATCAATTGACAAGAAAAG-TCATTTATAGTCACTCATGCCTTCGAAAGTGTAATTACTCACTTT
* * * * * * *
15265112 AAAT-AGTTTTATAA-TCTTATAATTGATTTTAAGTTGAATTTGTTTTT--GTTTTTGACTGAAA
65 AAGTGA-TTTTATAACT-TTA-AAATGATTTTAAATAGAATTT-TTTTTCATTTTTTG-TTAAAA
* * * * ** * *
15265173 TATATCATAATTGGATGTTTGCCTCAGGAAATATGAAGCGAAAGC
125 CATATCATAATTTGATGTTTGCATTAGGAAACCTGAAACGAAAAC
** ** * * ** *
15265218 CATGTATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTTAAAAG-GCTAGTTAGTTTCTC
1 CATCAATTGACAAGAAAAG-TCATTTATAGTCACTCATGCCTTCGAAAGTG-TAATTACTCACTT
* * * * *
15265282 TAAATGGTTTTATAATCTTGT-AAATGATTTTAAATTG-ATTTTTATTTCATTTTTAGTTAAAAT
64 TAAGTGATTTTATAA-CTT-TAAAATGATTTTAAATAGAATTTTT-TTTCATTTTTTGTTAAAAC
* ** * * * * *
15265345 AGATCATAATTCAATGCTTGCCTTAGGAAACATGAAGCGAAAGC
126 ATATCATAATTTGATGTTTGCATTAGGAAACCTGAAACGAAAAC
* * * * * * * ** * * *
15265389 TATCCATTGGCAGGAAAAGTCCATTTGTAGTGACTCATG-CTT-AAAAGACTAGTTATTCGCTTT
1 CATCAATTGACAAGAAAAGT-CATTTATAGTCACTCATGCCTTCGAAAGTGTAATTACTCACTTT
* * * *
15265452 AAGTGGTTTTTTAATCTTGT-AAATGATTTTAAATTG-ATTTTTTTGTCATTTTTGGTTAAAACA
65 AAGTGATTTTATAA-CTT-TAAAATGATTTTAAATAGAATTTTTTT-TCATTTTTTGTTAAAACA
* * * * ** **
15265515 TATCAAAATTGGATGTTTGCCTCAAAAAAAGTGAAGA-GAAAGA-
127 TATCATAATTTGATGTTTGCATTAGGAAACCTGAA-ACGAAA-AC
** * * * ** *
15265558 CATCCGTT-A-ATGGAAAAAGTCCATTTATACTCACTTATGCCTTCGAAAGACTAGTTACTCACT
1 CATCAATTGACA-AG-AAAAGT-CATTTATAGTCACTCATGCCTTCGAAAGTGTAATTACTCACT
* * * * ** *
15265621 TTAAATGGTTTTATAATCTTGT-AAATGATCTTAAGTTGAGGTTTTTTTTTTCATTTTTTGCTAA
63 TTAAGTGATTTTATAA-CTT-TAAAATGATTTTAA-AT-A-GAATTTTTTTTCATTTTTTGTTAA
* * ** * * *
15265685 AACATTTCATAATTGGATGTTAACCTTAGG-AACCATGAAGCGAAAGC
123 AACATATCATAATTTGATGTTTGCATTAGGAAACC-TGAAACGAAAAC
* * ** * * *
15265732 CATCTATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGACTAGTTACTCGCTTC
1 CATCAATTGACAAGAAAAGT-CATTTATAGTCACTCATGCCTTCGAAAGTGTAATTACTCACTTT
* * * *
15265797 AAATGGTTTTATAA-TCTTATAAATGATTTTAAATTGAA-TTTTTTTC-TTTTTTGGCTAAAACA
65 AAGTGATTTTATAACT-TTA-AAATGATTTTAAATAGAATTTTTTTTCATTTTTT-GTTAAAACA
* * * * * * ** *
15265859 AATCATAATTGGATGTTAGCACTAAGAAACGTGAAGTGAAAGC
127 TATCATAATTTGATGTTTGCATTAGGAAACCTGAAACGAAAAC
* * * * * * ** *
15265902 CATCCATTGACAAGGAATGTCAATTTATAGTCAGTAATGCCTTTGAAAGACTAGTTACTCACGTT
1 CATCAATTGACAAGAAAAGTC-ATTTATAGTCACTCATGCCTTCGAAAGTGTAATTACTCAC-TT
* * * * * * *
15265967 AAAG-GGTTTTATAATCTTGTAAACA--ATTTTAAGTTGACATTTCTTTTAATTTTTGGTTAAAA
64 TAAGTGATTTTATAA-CTT-TAAA-ATGATTTTAAATAGA-ATTTTTTTTCATTTTTTGTTAAAA
* * * * * ** * *
15266029 CATATCATAATTGGATATTTACCTAAAAAAACGTGAAGC-AAAAGC
125 CATATCATAATTTGATGTTTGCATTAGGAAACCTGAAACGAAAA-C
* * * *** ** * *
15266074 CATCAATTGACAAGAAAGGTCCATTTATAGACACTTATGCCTTCGAAAAACTTGTTCCTCGCTTT
1 CATCAATTGACAAGAAAAGT-CATTTATAGTCACTCATGCCTTCGAAAGTGTAATTACTCACTTT
* * * * *
15266139 AAATGGTTTTCTAATCTTGT-AAATGATTTTAAGTTGAATTTGTTTTTCA-TTTTTGTTTAAAAC
65 AAGTGATTTTATAA-CTT-TAAAATGATTTTAAATAGAATTT-TTTTTCATTTTTTG-TTAAAAC
* * * * * * ** *** *
15266202 ATAGCATAATTGGATGTTTACCTCAAGAAATGTGATGTGAAAGC
126 ATATCATAATTTGATGTTTGCATTAGGAAACCTGAAACGAAAAC
** * * * * * *
15266246 TGTCTATTGACAAGAAAAATCTATTTATAGTCACTCATGCCTTCCAAA-TACTAGTTACTCGCTT
1 CATCAATTGACAAGAAAAGTC-ATTTATAGTCACTCATGCCTTCGAAAGT-GTAATTACTCACTT
* * * * *
15266310 TAAATGGTTTTATAA-TCTTAGAAATGATTTTCAATTG-ATTTTTATTTCATTTTTGGTTAAAAC
64 TAAGTGATTTTATAACT-TTA-AAATGATTTTAAATAGAATTTTT-TTTCATTTTTTGTTAAAAC
* * * * *
15266373 AAATCATAATTGGATGTTTGCCTT-GGAAA-ATGTAAAGCGAAAGC
126 ATATCATAATTTGATGTTTGCATTAGGAAACCTG-AAA-CGAAAAC
* * * * *
15266417 CATCTATTCACAATAAAAGTCCATTTATACTCACTCATG-CTTCAAAAG
1 CATCAATTGACAAGAAAAGT-CATTTATAGTCACTCATGCCTTCGAAAG
15266465 ACTTGTTACT
Statistics
Matches: 4843, Mismatches: 886, Indels: 540
0.77 0.14 0.09
Matches are distributed among these distances:
152 109 0.02
153 4 0.00
154 4 0.00
157 1 0.00
158 4 0.00
159 1 0.00
160 2 0.00
161 2 0.00
162 1 0.00
163 82 0.02
164 43 0.01
165 6 0.00
166 1 0.00
167 12 0.00
168 242 0.05
169 532 0.11
170 1011 0.21
171 1558 0.32
172 935 0.19
173 29 0.01
174 245 0.05
175 18 0.00
176 1 0.00
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.38
Consensus pattern (169 bp):
CATCAATTGACAAGAAAAGTCATTTATAGTCACTCATGCCTTCGAAAGTGTAATTACTCACTTTA
AGTGATTTTATAACTTTAAAATGATTTTAAATAGAATTTTTTTTCATTTTTTGTTAAAACATATC
ATAATTTGATGTTTGCATTAGGAAACCTGAAACGAAAAC
Found at i:15261681 original size:172 final size:171
Alignment explanation
Indices: 15261386--15266517 Score: 5226
Period size: 171 Copynumber: 30.1 Consensus size: 171
15261376 CTTTAAATAG
* **
15261386 TTTTAAGTTGAATTTTTTTTTCATTTTTGGTTAAAACATATTGTAATTGGATGTTTGCCTT-GAG
1 TTTTAAGTTG-ATTTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTAG-G
* * * * * *
15261450 ACACGTGAAGTGAATGCCATCCGTTTG-CAAGCAAAGTCCAGTTATAGTCACTCATGCCTTCGAA
64 AAACGTGAAGCGAAAGCCATCC-ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA
* * * * *
15261514 GGACTAGTTACTCACTTTAAATGGTTTTATCATCTTGTAAATAA
128 AGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGA
* * * * * *
15261558 TCTTAAGTTTACTTTTTTTTTCATTTTTGGCTAAAATAGATCATAATTGGATGTTAGCCTTAAGA
1 TTTTAAGTTGA-TTTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTAGGA
* * * * *
15261623 AACGTGAAGTGAAAGCCATCCCTTGACAAGAAAAGTCCATTTATAGTCAATAATGCCTTCAAAAG
65 AACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAG
* * * **
15261688 ACTAGTTACTCACATTAAATGGTTTTATGATCTTATGTATGA
130 ACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGA
* * * **
15261730 TTTTAAGTTGAATTGTTTTTCATTTTTGGTTAAGACAGATCATAATCAGATGTTTGCC-TAGGGA
1 TTTTAAGTTGATTTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTA-GGA
* * * * * *
15261794 AACGTGAAGCAAAAGTCATCCATTAAGAAGAAAAGTTCATTTATAGTCACTCATGCCTTAGAAAG
65 AACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAG
* * * *
15261859 ACTAGTTATTCACTTTAAATGGTTTTATAGTCTCATAAATGA
130 ACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGA
* ** * *
15261901 TTTTAAGTTGAATTTTTTTTC-TTGTTTCATTAAAAAAGATCATAATTGGATGTTTACCTTAGGA
1 TTTTAAGTTGATTTTTTTTTCATT-TTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTAGGA
* * * *
15261965 AACATGAGGCGAAAGCCATCCATTGACAAGAAAAGTTCATTTATAGTCACTTATGCCTTCGAAAG
65 AACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAG
* * *
15262030 ACTAGTTACTCACATTAAATGGTTTTATAATCTTGTAAATGA
130 ACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGA
* ** * * *
15262072 TTTTATGTTGA-TTTTTTTT-ATTTTTTATTGAAACAGATCATAATTGGATGTTTGCCTTGGGAG
1 TTTTAAGTTGATTTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTAGGAA
** * *
15262135 ACGTGATA-TAAAAGCCATCTATTGACAAGAAAAGTCCATTTATCA-TCACTCATGCTTTCGAAA
66 ACGTGA-AGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTAT-AGTCACTCATGCCTTCGAAA
** * * *
15262198 GTGTAATTACTAGCTTTAAATGGTTTTATAAACTTATAAATGA
129 GACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGA
* * * * *
15262241 TTTTAAGCT-ATTTTTTTTTCATTTTTTGTTAAAACAAATCATAATTGGATGTTTTCCTTAAGAA
1 TTTTAAGTTGATTTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTAGGAA
* ** * *
15262305 ACATGCCGCAAAAGCCATCCATTGAC-AGAAAAAGTCCATTTATAGTCACTCATGGCTTCGAAAG
66 ACGTGAAGCGAAAGCCATCCATTGACAAG-AAAAGTCCATTTATAGTCACTCATGCCTTCGAAAG
* * *
15262369 ACTAGTTACTCCCTTTAAAGGGTTTTATAATCTTGTAAATGA
130 ACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGA
* * * *
15262411 TTTTAAGTTGAATTTGTTTTTCATTTTTAGTTAAAACAGATCATAATTGGATATTTGCCTCAAGG
1 TTTTAAGTTG-ATTTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCT-TAGG
* * * **
15262476 -AACGTGAAGTGAACA-TCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGTGTTCGAA
64 AAACGTGAAGCGAA-AGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA
* * * *
15262539 ATACTAGTTACTCACTTTAAATGGTTTTGTAATCTTATAACTGA
128 AGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGA
* * * * * * * *
15262583 TTTCATGTTGAATTTTTATTCATTTTTAGTTAAAACAGATCATAATTGGATGTTTACCATGGGAA
1 TTTTAAGTTGATTTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTAGGAA
* * * * * * * *
15262648 ACGTGAAGCGAAAGCGATCCATTGATAAGAAAAGTCTATTTATTGTTACTAATG-CTTTGAAATA
66 ACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGA
* *
15262712 CTAGTTACTCGCTTTAAATGGTTTTATAATCTTGTAAATAA
131 CTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGA
*
15262753 TTTTAAGTTGAATTATTTTTTT-ATTTTTGGTTAAAACAGATCATAATTAGATGTTTGCCTT-GC
1 TTTTAAGTTG-ATT-TTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTAG-
* * * * *
15262816 AAAAAGTGAAGTGAAAGCCATCCACTGACAAGAAAAGTCCATTTATTA-TCACTCATGCCTTTGA
63 GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTA-TAGTCACTCATGCCTTCGA
**
15262880 AAGACTAGTTACTCATTTTAAATGGTTTTATAATC-TAGTAAATGA
127 AAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTA-TAAATGA
* * * * *
15262925 TTTTAAGTTGAATTGTTTTTTCATTTTGGGCTAAAAC-GTATTATAATTGGATGCTTGCCTT-GG
1 TTTTAAGTTG-ATTTTTTTTTCATTTTTGGTTAAAACAG-ATCATAATTGGATGTTTGCCTTAGG
* * * * * * *
15262988 AAAACATGAAGCAAAAGCCATCCATTTACAAAAAAAGTCTATCTATCGTCACTCATG-CTTCGAA
64 -AAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA
* * *
15263052 ATACTAGTTACACGCTTTAAATGGTTTTATAATCTTATAACTGA
128 AGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGA
* * * * * * * * * * *
15263096 TTTTATGTTGAATTTGTTTTCA-TTTTGGTGAAAATAGATCCT-ATTAGATGTTTCCCTCAAGAC
1 TTTTAAGTTGATTTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTAGGAA
* ** * *
15263159 ACGTGAAGTGAAAGCCATATATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGA
66 ACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGA
* *
15263224 CTAGTTATTCGCTTTAAATGGTTTTATAATCTTATAAACGA
131 CTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGA
* * ** * * *
15263265 TCTTAAG-TCAAATTTTTTTCATTTTTGGCTAAAACAGATCATAATTGGATGTTAGCCTTGGGAA
1 TTTTAAGTTGATTTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTAGGAA
** * ** *
15263329 ACGTGAAGCGAAATTCATCAATTGAC-AGAAAAGTCTGTTTATAGTCACTCATGCCTTTG-AAGA
66 ACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGA
* * * * *
15263392 CTAGGTACTCGCGTTCAATGGTTTTATAATTTTATAAGTGA
131 CTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGA
* * * *
15263433 TTTTAAGTTGAATTTTTTTT-ATTTTTGGTTAAAATAGATCATAATTGGATGTTTGCCTCAAGAA
1 TTTTAAGTTGATTTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTAGGAA
* *
15263497 ACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATATTCACTCATGCCTTCGAAAGA
66 ACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGA
* * *
15263562 ATAGTTACTTGCTTTAAATGGTTTTATAATCTTATAAGTGA
131 CTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGA
* * * * * ** ** *
15263603 TTTTAAGTTAAATTTTTATTCATTTTTGGCTAAAACAGATGATAATTAAATGTTAACCTTAGAAA
1 TTTTAAGTTGATTTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTAGGAA
* * ** * *
15263668 ATGTGAAGCAAAAGTTATCCATTGACAAGAAAAGTCTATTTATAGTCACTTATGCCTTC-AAACG
66 ACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA-G
* **
15263732 ACTACG-TGCTCGCTTTAAATGGCGTTATAATCTTATAAATGA
130 ACTA-GTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGA
* * *
15263774 CTTTAAGTTGAATTTTTTTTTTTAATTTTTGGTTAAAACAGAT-AGTAATTGGATGTTTGCCTTG
1 TTTTAAGTTG-A--TTTTTTTTTCATTTTTGGTTAAAACAGATCA-TAATTGGATGTTTGCCTTA
** * * * ** * ** *
15263838 GGAAATATGAAGTGAAAGCCATCCATTGACAAAAAAAGTCCATTTATATTGGCTCACGTGTTCAA
62 GGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGA
* * * **
15263903 AAGACTACTTACTCGTTTTAAATAGTGCTATAATCTTATAAATGA
127 AAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGA
* * * * * *
15263948 TTTTGAGTTAAATTTTTTTTTAATTTTTGGTTAAAGCAGATCATAATTGGATCTTTGCCTCT-GA
1 TTTTAAGTT-GATTTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCT-TAGG
* * * * *
15264012 AAACGTGAAGCAAAAGCCATCAATTGACAAGAAAAGTCCATTTATATTCACTCATGCTTTTGAAA
64 AAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA
* * **
15264077 GAATAGTTACTCGCTTTAAATGATTTTATAATCTTATACGTGA
129 GACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGA
* * * * * * * *
15264120 TTTTAAGTTGAATTTTCTTTCCTTTTTTGGGTAAAACAGATGATAATTGGATGTTAGCCTCAAGA
1 TTTTAAGTTG-ATTTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTAGGA
* * * * *
15264185 AACGCGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTTTACTCATTCATGCCTTCGAAAG
65 AACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAG
* * *
15264250 ACTAGGTACTTGCTTTAAATGGTGTTATAATCTTATAAATGA
130 ACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGA
* * *
15264292 CTTTAAGTTGA----TTTTT--TTTTT-GTTAAAATAGATCATAATTGGATGTTTGCCTTGGGAA
1 TTTTAAGTTGATTTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTAGGAA
** * * * * * *
15264350 ACGTGAAGC-AAAAACAACCATTGGCAAGAAAAGTCCATTTACATTTACTCATGCCTTTGAAAGA
66 ACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGA
* ** * *
15264414 ATAACTACTCACTTTAAATGGTTTTATAATTTTATAAATGA
131 CTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGA
* * * * ** * *
15264455 TTTTAAGTTGAATTTTTTTTCTTTTTTGGCTAAAACAGATTATAATTCTATGTTAGCCTTGGGAA
1 TTTTAAGTTGATTTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTAGGAA
* * ** * * *
15264520 ACATGAAGCGAAAGGCATCCATTGAGTAGAAAAGTCTACTTATAGTCACTCATGCCTTCTAAATG
66 ACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA-G
*
15264585 -CTAGTTACTCGCTTTAAATGGTTTGATAATCTTATAAATGA
130 ACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGA
* * * * * *
15264626 TTTTATGTTGAATTTGTTTTCATTTTTTGTTAAAACAGATCATACTTGGATGTTTGCCTCAGGAA
1 TTTTAAGTTGATTTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTAGGAA
* * *
15264691 ACGTGAAACGAAAGCCATCCATTGACAAGTAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGA
66 ACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGA
* * * *
15264756 CTAGTTACTCACTTTAAATAGTTTTCTAATCTTGTAAATGA
131 CTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGA
* * * * *
15264797 TTTTAAGTTGAATTCTTTTTCCTTTTTGGTTAAAACATATCATAATTGGATGTTTGCCTCT-GGG
1 TTTTAAGTTGATTTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCT-TAGGA
* ** * * * * *
15264861 AACGTGAAGCGAAAGCCATCCATTGATAAGAAAAGTCTGTTTATGGTCACTGATGTCTTTGAATG
65 AACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAG
* * ** *
15264926 GCTAATTACTCATTTTAAAT-GTTTTATAATCTTATAATTGA
130 ACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGA
** * * * *
15264967 TTTTAAGTTGAACCTTTTTTTCATTCTTT-GCTAAAATAGATCATAATTGGATGCTAGCAC-TAG
1 TTTTAAGTTG-ATTTTTTTTTCATT-TTTGGTTAAAACAGATCATAATTGGATGTTTGC-CTTAG
* * * ** * *
15265030 GAAATGTGAAGCGAAAGCCATCCATTGACAAAAAAAGCCCATTTAT-GTCGGTAATTCCTTCGAA
63 GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA
** * * *
15265094 AGACTAGTTACTTACGTTAAATAGTTTTATAATCTTATAATTGA
128 AGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGA
* * ** * * * *
15265138 TTTTAAGTTGAATTTGTTTTT-GTTTTTGACTGAAATATATCATAATTGGATGTTTGCCTCAGGA
1 TTTTAAGTTG-ATTTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTAGGA
** ** * **
15265202 AATATGAAGCGAAAGCCATGTATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCTTTAAAAG
65 AACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAG
* * ** * *
15265267 GCTAGTTAGTTTCTCTAAATGGTTTTATAATCTTGTAAATGA
130 ACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGA
* * * * ** *
15265309 TTTTAAATTGATTTTTATTTCATTTTTAGTTAAAATAGATCATAATTCAATGCTTGCCTTAGGAA
1 TTTTAAGTTGATTTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTAGGAA
* * * * * * *
15265374 ACATGAAGCGAAAGCTATCCATTGGCAGGAAAAGTCCATTTGTAGTGACTCATG-CTT-AAAAGA
66 ACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGA
* * * *
15265437 CTAGTTATTCGCTTTAAGTGGTTTTTTAATCTTGTAAATGA
131 CTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGA
* * * * * **
15265478 TTTTAAATTGATTTTTTTGTCATTTTTGGTTAAAACATATCAAAATTGGATGTTTGCCTCAAAAA
1 TTTTAAGTTGATTTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTAGGAA
* * * * * * *
15265543 AAGTGAAGAGAAAGACATCCGTT-A-ATGGAAAAAGTCCATTTATACTCACTTATGCCTTCGAAA
66 ACGTGAAGCGAAAGCCATCCATTGACA-AG-AAAAGTCCATTTATAGTCACTCATGCCTTCGAAA
* *
15265606 GACTAGTTACTCACTTTAAATGGTTTTATAATCTTGTAAATGA
129 GACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGA
* * * ** **
15265649 TCTTAAGTTGAGGTTTTTTTTTTCATTTTTTGCTAAAACATTTCATAATTGGATGTTAACCTTAG
1 TTTTAAGTTGA---TTTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTAG
* * * *
15265714 GAACCATGAAGCGAAAGCCATCTATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAA
63 GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA
*
15265779 AGACTAGTTACTCGCTTCAAATGGTTTTATAATCTTATAAATGA
128 AGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGA
* * * * * * *
15265823 TTTTAAATTGA-ATTTTTTTCTTTTTTGGCTAAAACAAATCATAATTGGATGTTAGCAC-TAAGA
1 TTTTAAGTTGATTTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGC-CTTAGGA
* * * * * * *
15265886 AACGTGAAGTGAAAGCCATCCATTGACAAGGAATGTCAATTTATAGTCAGTAATGCCTTTGAAAG
65 AACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAG
* * * * **
15265951 ACTAGTTACTCACGTTAAAGGGTTTTATAATCTTGTAAACAA
130 ACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGA
* * * * * * * **
15265993 TTTTAAGTTGACATTTCTTTTAATTTTTGGTTAAAACATATCATAATTGGATATTTACCTAAAAA
1 TTTTAAGTTGA-TTTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTAGGA
* * * * * *
15266058 AACGTGAAGCAAAAGCCATCAATTGACAAGAAAGGTCCATTTATAGACACTTATGCCTTCGAAAA
65 AACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAG
* * * *
15266123 ACTTGTTCCTCGCTTTAAATGGTTTTCTAATCTTGTAAATGA
130 ACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGA
* * * * * * *
15266165 TTTTAAGTTGAATTTGTTTTTCATTTTTGTTTAAAACATAGCATAATTGGATGTTTACCTCAAGA
1 TTTTAAGTTG-ATTTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTAGGA
* * * ** * * * * *
15266230 AATGTGATGTGAAAGCTGTCTATTGACAAGAAAAATCTATTTATAGTCACTCATGCCTTCCAAAT
65 AACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAG
*
15266295 ACTAGTTACTCGCTTTAAATGGTTTTATAATCTTAGAAATGA
130 ACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGA
* *
15266337 TTTTCAA-TTGATTTTTATTTCATTTTTGGTTAAAACAAATCATAATTGGATGTTTGCCTT-GGA
1 TTTT-AAGTTGATTTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTAGG-
* * * * * * *
15266400 AAATGTAAAGCGAAAGCCATCTATTCACAATAAAAGTCCATTTATACTCACTCATG-CTTCAAAA
64 AAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA
* * * *
15266464 GACTTGTTACTCGCTTTAAATGCTTTTATAATCATAT-AATCAA
129 GACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAAT-GA
15266507 TTTTAAGTTGA
1 TTTTAAGTTGA
15266518 ATATTGTAAC
Statistics
Matches: 4095, Mismatches: 773, Indels: 186
0.81 0.15 0.04
Matches are distributed among these distances:
163 89 0.02
164 38 0.01
165 5 0.00
167 9 0.00
168 174 0.04
169 432 0.11
170 677 0.17
171 1383 0.34
172 1000 0.24
173 11 0.00
174 271 0.07
175 5 0.00
176 1 0.00
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.38
Consensus pattern (171 bp):
TTTTAAGTTGATTTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTAGGAA
ACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGA
CTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGA
Found at i:15268680 original size:19 final size:19
Alignment explanation
Indices: 15268656--15268701 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
15268646 GGTTGGCTAT
*
15268656 ACAAAAGAAAG-GAAGAAA
1 ACAAAAGAAAGTAAAGAAA
*
15268674 GACAAAAAAAAGTAAAGAAA
1 -ACAAAAGAAAGTAAAGAAA
15268694 ACAAAAGA
1 ACAAAAGA
15268702 GAAGAGTGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
19 17 0.74
20 6 0.26
ACGTcount: A:0.74, C:0.07, G:0.17, T:0.02
Consensus pattern (19 bp):
ACAAAAGAAAGTAAAGAAA
Found at i:15269067 original size:34 final size:34
Alignment explanation
Indices: 15269024--15269171 Score: 208
Period size: 34 Copynumber: 4.4 Consensus size: 34
15269014 TTTTGGATGT
*
15269024 AGAAAAATTGGAGCTGGTTGCTGCCAATTTGTGC
1 AGAAAAATTGGAGCTGTTTGCTGCCAATTTGTGC
** *
15269058 AGAAAAATTGGAGCTGTTTATTGCCAATTTGTGT
1 AGAAAAATTGGAGCTGTTTGCTGCCAATTTGTGC
* *
15269092 AGAAAAATTAGAGTTGTTTGCTGCCAATTTGTGC
1 AGAAAAATTGGAGCTGTTTGCTGCCAATTTGTGC
* *
15269126 A-AACAAATTAGAGCTATTTGCTGCCAATTTGTGC
1 AGAA-AAATTGGAGCTGTTTGCTGCCAATTTGTGC
15269160 AGAAAAATTGGA
1 AGAAAAATTGGA
15269172 CAGTATTATG
Statistics
Matches: 100, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
33 2 0.02
34 96 0.96
35 2 0.02
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.32
Consensus pattern (34 bp):
AGAAAAATTGGAGCTGTTTGCTGCCAATTTGTGC
Found at i:15269372 original size:25 final size:24
Alignment explanation
Indices: 15269318--15269372 Score: 56
Period size: 25 Copynumber: 2.2 Consensus size: 24
15269308 GAAATGAAAA
**
15269318 AAAAAAGAATGGGCATGGCCCAAT
1 AAAAAAGAATGGGCATAACCCAAT
* * *
15269342 AGAAAATAAGTGGGCATAACCCACT
1 AAAAAAGAA-TGGGCATAACCCAAT
15269367 AAAAAA
1 AAAAAA
15269373 AAATAGAAAA
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
24 7 0.29
25 17 0.71
ACGTcount: A:0.51, C:0.16, G:0.20, T:0.13
Consensus pattern (24 bp):
AAAAAAGAATGGGCATAACCCAAT
Found at i:15271777 original size:2 final size:2
Alignment explanation
Indices: 15271770--15271802 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
15271760 TCAAATAATG
15271770 TA TA TA TA TA TA TA -A TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15271803 ATACGAATGT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:15271784 original size:17 final size:17
Alignment explanation
Indices: 15271764--15271800 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
15271754 ATCAATTCAA
*
15271764 ATAATGTATATATATAT
1 ATAATATATATATATAT
15271781 ATAATATATATATATAT
1 ATAATATATATATATAT
15271798 ATA
1 ATA
15271801 TAATACGAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (17 bp):
ATAATATATATATATAT
Found at i:15285962 original size:171 final size:169
Alignment explanation
Indices: 15285214--15286957 Score: 1835
Period size: 170 Copynumber: 10.3 Consensus size: 169
15285204 GGGTGTTAAA
** * * * * * * *
15285214 AATTTTTTTTCATTTTCAGTTAAAACAAATCATAATTGGATGTTTGCCTCGAGAAATGCGAGGCG
1 AATTTTTTTT-ATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCTAG-GAAACGTGAAGCA
* * * * *
15285279 AAAGCCATCCATTGAGAAGAAAAGTCCATTTATAGTCATTCATG-CATCAAAAGACTAGTTATTC
64 AAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCAAAAGACTAGTTACTC
* *
15285343 GCTTTAAATGGTTTTATAATCTTATAAATAATTTTAAGTTG
129 ACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG
** * * * *
15285384 AACCTTCCTTTTATTTTTTGCTCAAATAGATCATAATTGGATGTTTGCCTTAGGAAACGTGGAGC
1 AA--TTTTTTTTATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCC-TAGGAAACGTGAAGC
* *
15285449 AAAATCCATCCATTGACAAGGAAAGT-TCATTTATAGTCACTCATGCCTTCAAAAGACTAGTTAC
63 AAAAGCCATCCATTGACAAGAAAAGTCT-ATTTATAGTCACTCATGCCTTCAAAAGACTAGTTAC
*
15285513 TTACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG
127 TCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG
* * * ** * * * **
15285556 TATTTTTCTCATTTTCAGCTAAAACATATCATAATTGGATGTTTGCTTAAGGAAGCGTGAAGTGA
1 AATTTTTTTTATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCT-AGGAAACGTGAAGCAA
* * * * *
15285621 AAGCCATCCACTGATAAGAAAAGTTTATTTAGAGTCACTAATGCCTTCAGAAAG-CTAGTTACTC
65 AAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCA-AAAGACTAGTTACTC
* * * * *
15285685 ACTTCAAATAGTTTTATAATCTTATAAATAACTTTAGGTT-
129 ACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG
* * *
15285725 AATTTTTTTTTTCATTTTTGGCTAAAACAAATCATAAGTGGATGTTTGCCTTAAGAAACGTGAAG
1 AA--TTTTTTTT-ATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCC-TAGGAAACGTGAAG
* * * * *
15285790 CAAAAACTATCCATTGACAATAAAAAGTCTATTTATAGTCACTTATGCCTTCAAAAGACTTGTTA
62 CAAAAGCCATCCATTGACAA-GAAAAGTCTATTTATAGTCACTCATGCCTTCAAAAGACTAGTTA
* * * * * * *
15285855 CACATTTTATATAGTTTCATAATCTTGTAAACGATTTTAAGTTG
126 CTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG
* * *
15285899 AATTTTTTTTATTTTTTGTTAAAACAGATCATAATTGGATGTTTGCCTAAGGAAACATGAAGCAA
1 AATTTTTTTTATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCT-AGGAAACGTGAAGCAA
** * * * *
15285964 ATTCCATCCATTGATAAGAAAAGTCAATTTATAGTCACTCATGCCTTCGAAAGACTAGTCACTCA
65 AAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCAAAAGACTAGTTACTCA
* * *
15286029 CTTTAAATTG-TTTATAATCTTGTAAATGATCTTAAGTTG
130 CTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG
* * * * * * *
15286068 AATTTTTCTTCA-TTTTAGCTAAAACATATCATAATTGGATGTTAGCCTCATGAAATGTGAAGCG
1 AATTTTT-TTTATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCT-AGGAAACGTGAAGCA
* * * *
15286132 AAAGTCATCAATTGACAAGAAAAGTCTATTTATAGCCACTCATGCCTTCGAAAGACTAGTTACTC
64 AAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCAAAAGACTAGTTACTC
* * *
15286197 ATTTTAAATGGTTTTATAATCTCATAAATGATTTTAAGTGG
129 ACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG
* ** * * * * * * * *
15286238 AATTTTTTTCATTTTTGTTTAAAATATATCATAATTAGAAGTTTGCCTTGAAAAACATGAAGCGA
1 AATTTTTTTTATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCTAG-GAAACGTGAAGCAA
* ** * * * *
15286303 GAGCCATCCATTGGTAAGAAAAGTCCATTTACAGTCATTCATGCCTTC----GA-AAG-TACTCA
65 AAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCAAAAGACTAGTTACTCA
* *
15286362 CTTTAAATGGTTTTATAATCTTGTAAATGATCTTAAGTT-
130 CTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG
* *
15286401 --TTTTTTTTATTTTTGGTTAAAACAGATCATAATTGGATGTTTTCCCTAGGAAACGTGAAGCAA
1 AATTTTTTTTATTTTTGGCTAAAACAGATCATAATTGGATG-TTTGCCTAGGAAACGTGAAGCAA
* * * * * * *
15286464 AAGCCATCCATTAACAAGAAAGGTGC-ATTTATAGTCACTCATACCTTCGAAATACTTGTTA-TT
65 AAGCCATCCATTGACAAGAAAAGT-CTATTTATAGTCACTCATGCCTTCAAAAGACTAGTTACTC
*
15286527 AGCTTTAAATGGTTTTATAATCTTGTAAATGATTTTAAGTTG
129 A-CTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG
* * *
15286569 AATTTTTTTTTCATTTTTGTG-TAAAATAGATCATAATT-G-TGTTTGGCTTGAGAAACGTGAAG
1 AA-TTTTTTTT-ATTTTTG-GCTAAAACAGATCATAATTGGATGTTTGCCTAG-GAAACGTGAAG
* * * *
15286631 -AGAAAACCATCCATTGACAACAAAAGTCTATTTATAGTCACTCATGCCTTTAAAAGACTTGTTA
62 CA-AAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCAAAAGACTAGTTA
*
15286695 CTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG
126 CTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG
* *
15286739 AATTTTTTTTTCATTTTTGGCTAAAACAGATCATAATTGGATGTTT-CCTTGCAAAACGTGAAGC
1 AA-TTTTTTTT-ATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCTAG-GAAACGTGAAGC
* * * ** * *
15286803 GAAAGCCATCCATTGACAAGAAAACTCCATTTATAGTCGTTAATGCCTTCAAAACG-CTCGTTAC
63 AAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCAAAA-GACTAGTTAC
*
15286867 TCACTTAAAATGGTTTTATAATCTTATAAATGATTTTAAGTT-
127 TCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG
*
15286909 AATTTTTTTTCATTTTTGGCTAAAACAAATCATAATTGGATGTTTGCCT
1 AATTTTTTTT-ATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCT
15286958 TGAGAAACTG
Statistics
Matches: 1317, Mismatches: 212, Indels: 90
0.81 0.13 0.06
Matches are distributed among these distances:
161 82 0.06
162 8 0.01
164 40 0.03
165 3 0.00
166 5 0.00
167 40 0.03
169 199 0.15
170 441 0.33
171 265 0.20
172 163 0.12
173 69 0.05
174 2 0.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (169 bp):
AATTTTTTTTATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCTAGGAAACGTGAAGCAAA
AGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCAAAAGACTAGTTACTCAC
TTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG
Found at i:15286880 original size:341 final size:342
Alignment explanation
Indices: 15285214--15286965 Score: 1927
Period size: 341 Copynumber: 5.2 Consensus size: 342
15285204 GGGTGTTAAA
* * * * * *
15285214 AATTTTTTTTCATTTTCAGT-TAAAACAAATCATAATTGGATGTTTGCCTCGAGAAATGCGAGGC
1 AATTTTTTTTCATTTT-TGTGTAAAACAAATCATAATTGGATGTTTGCCTTGAGAAACGTGAAGA
* * * *
15285278 GAAAGCCATCCATTGAGAAGAAAAGTCCATTTATAGTCATTCATG-CATCAAAAGACTAGTTATT
65 GAAAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGACTAGTTACT
* * * ** *
15285342 CGCTTTAAATGGTTTTATAATCTTATAAATAATTTTAAGTTGAACCTTCCTTTT-ATTTTTTGCT
130 CACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA-TTTTTTTTTCATTTTTGGCT
* * * * * *
15285406 CAAATAGATCATAATTGGATGTTTGCCTTAGGAAACGTGGAGCAAAATCCATCCATTGACAAGGA
194 AAAACAGATCATAATTGGATGTTTGCCTT-GAAAACGTGAAGCAAAAGCCATCCATTGACAAGAA
* *
15285471 AAGTTCATTTATAGTCACTCATGCCTTCAAAAGACTAGTTACTTACTTTAAATGGTTTTATAATC
258 AAGTCCATTTATAGTCACTCATGCCTTCAAAAGACTAGTTACTCACTTTAAATGGTTTTATAATC
15285536 TTATAAATGATTTTAAGTTG
323 TTATAAATGATTTTAAGTTG
* * * * * * *
15285556 TA-TTTTTCTCATTTTCAG-CTAAAACATATCATAATTGGATGTTTG-CTTAAGGAAGCGTGAAG
1 AATTTTTTTTCATTTT-TGTGTAAAACAAATCATAATTGGATGTTTGCCTTGA-GAAACGTGAAG
* * ** * *
15285618 TGAAAGCCATCCACTGATAAGAAAAGTTTATTTAGAGTCACTAATGCCTTCAGAAAG-CTAGTTA
64 AGAAAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCA-AAAGACTAGTTA
* * * * *
15285682 CTCACTTCAAATAGTTTTATAATCTTATAAATAACTTTAGGTT-AATTTTTTTTTTCATTTTTGG
128 CTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA-TTTTTTTTTCATTTTTGG
* * * * *
15285746 CTAAAACAAATCATAAGTGGATGTTTGCCTTAAGAAACGTGAAGCAAAAACTATCCATTGACAAT
192 CTAAAACAGATCATAATTGGATGTTTGCCTTGA-AAACGTGAAGCAAAAGCCATCCATTGACAA-
* * * * * * * * *
15285811 AAAAAGTCTATTTATAGTCACTTATGCCTTCAAAAGACTTGTTACACATTTTATATAGTTTCATA
255 GAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGACTAGTTACTCACTTTAAATGGTTTTATA
* *
15285876 ATCTTGTAAACGATTTTAAGTTG
320 ATCTTATAAATGATTTTAAGTTG
* * *
15285899 AATTTTTTTT-ATTTTT-TGTTAAAACAGATCATAATTGGATGTTTGCC-TAAGGAAACATGAAG
1 AATTTTTTTTCATTTTTGTG-TAAAACAAATCATAATTGGATGTTTGCCTTGA-GAAACGTGAAG
** * * *
15285961 CA-AATTCCATCCATTGATAAGAAAAGTCAATTTATAGTCACTCATGCCTTCGAAAGACTAGTCA
64 -AGAAAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGACTAGTTA
* * * * *
15286025 CTCACTTTAAATTG-TTTATAATCTTGTAAATGATCTTAAGTTGAA-TTTTTCTTCA-TTTTAGC
128 CTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTTCATTTTTGGC
* * * * * *
15286087 TAAAACATATCATAATTGGATGTTAGCCTCATG-AAATGTGAAGCGAAAGTCATCAATTGACAAG
193 TAAAACAGATCATAATTGGATGTTTGCCT--TGAAAACGTGAAGCAAAAGCCATCCATTGACAAG
* * * *
15286151 AAAAGTCTATTTATAGCCACTCATGCCTTCGAAAGACTAGTTACTCATTTTAAATGGTTTTATAA
256 AAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGACTAGTTACTCACTTTAAATGGTTTTATAA
* *
15286216 TCTCATAAATGATTTTAAGTGG
321 TCTTATAAATGATTTTAAGTTG
* * * * * * * *
15286238 AA-TTTTTTTCATTTTTGTTTAAAATATATCATAATTAGAAGTTTGCCTTGAAAAACATGAAGCG
1 AATTTTTTTTCATTTTTGTGTAAAACAAATCATAATTGGATGTTTGCCTTGAGAAACGTGAAGAG
* * * * *
15286302 AGAGCCATCCATTGGTAAGAAAAGTCCATTTACAGTCATTCATGCCTTC----GA-AAG-TACTC
66 AAAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGACTAGTTACTC
* * *
15286361 ACTTTAAATGGTTTTATAATCTTGTAAATGATCTTAAG-T---TTTTTTTTT-ATTTTTGGTTAA
131 ACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTTCATTTTTGGCTAA
* * * * *
15286421 AACAGATCATAATTGGATGTTTTCCCTAGGAAACGTGAAGCAAAAGCCATCCATTAACAAGAAAG
196 AACAGATCATAATTGGATG-TTTGCCTTGAAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAA
* * * * * *
15286486 GTGCATTTATAGTCACTCATACCTTCGAAATACTTGTTA-TTAGCTTTAAATGGTTTTATAATCT
260 GTCCATTTATAGTCACTCATGCCTTCAAAAGACTAGTTACTCA-CTTTAAATGGTTTTATAATCT
*
15286550 TGTAAATGATTTTAAGTTG
324 TATAAATGATTTTAAGTTG
* * *
15286569 AATTTTTTTTTCATTTTTGTGTAAAATAGATCATAATT-G-TGTTTGGCTTGAGAAACGTGAAGA
1 AA-TTTTTTTTCATTTTTGTGTAAAACAAATCATAATTGGATGTTTGCCTTGAGAAACGTGAAGA
* * * * * *
15286632 GAAAACCATCCATTGACAACAAAAGTCTATTTATAGTCACTCATGCCTTTAAAAGACTTGTTACT
65 GAAAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGACTAGTTACT
*
15286697 CGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTTCATTTTTGGCTA
130 CACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTTCATTTTTGGCTA
*
15286762 AAACAGATCATAATTGGATGTTT-CCTTGCAAAACGTGAAGCGAAAGCCATCCATTGACAAGAAA
195 AAACAGATCATAATTGGATGTTTGCCTTG-AAAACGTGAAGCAAAAGCCATCCATTGACAAGAAA
* ** * * *
15286826 ACTCCATTTATAGTCGTTAATGCCTTCAAAACG-CTCGTTACTCACTTAAAATGGTTTTATAATC
259 AGTCCATTTATAGTCACTCATGCCTTCAAAA-GACTAGTTACTCACTTTAAATGGTTTTATAATC
15286890 TTATAAATGATTTTAAGTT-
323 TTATAAATGATTTTAAGTTG
15286909 AATTTTTTTTCATTTTTG-GCTAAAACAAATCATAATTGGATGTTTGCCTTGAGAAAC
1 AATTTTTTTTCATTTTTGTG-TAAAACAAATCATAATTGGATGTTTGCCTTGAGAAAC
15286966 TGCTGGGATT
Statistics
Matches: 1180, Mismatches: 185, Indels: 91
0.81 0.13 0.06
Matches are distributed among these distances:
330 4 0.00
331 193 0.16
332 6 0.01
333 47 0.04
334 28 0.02
335 4 0.00
336 1 0.00
337 40 0.03
338 9 0.01
339 190 0.16
340 69 0.06
341 228 0.19
342 170 0.14
343 184 0.16
344 7 0.01
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (342 bp):
AATTTTTTTTCATTTTTGTGTAAAACAAATCATAATTGGATGTTTGCCTTGAGAAACGTGAAGAG
AAAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGACTAGTTACTC
ACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTTCATTTTTGGCTAA
AACAGATCATAATTGGATGTTTGCCTTGAAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAG
TCCATTTATAGTCACTCATGCCTTCAAAAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTA
TAAATGATTTTAAGTTG
Found at i:15290816 original size:28 final size:28
Alignment explanation
Indices: 15290757--15290816 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
15290747 TGGGTGGTGT
* * * *
15290757 AAAATTACAATTTTGCCCCTAGGGTGGC
1 AAAATGACAATTTTACCCCTAGGCTGGA
* *
15290785 AAAATGACTATTTTACCCCTATGCTGGA
1 AAAATGACAATTTTACCCCTAGGCTGGA
15290813 AAAA
1 AAAA
15290817 ATGTCAAAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (28 bp):
AAAATGACAATTTTACCCCTAGGCTGGA
Found at i:15291657 original size:2 final size:2
Alignment explanation
Indices: 15291633--15291688 Score: 80
Period size: 2 Copynumber: 28.5 Consensus size: 2
15291623 TATGTGCTCC
*
15291633 TA TA T- TA TA -A TGA TA TA TG TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15291674 TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA T
15291689 GCTGTGCATT
Statistics
Matches: 49, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
1 2 0.04
2 45 0.92
3 2 0.04
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (2 bp):
TA
Found at i:15291824 original size:2 final size:2
Alignment explanation
Indices: 15291788--15291816 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
15291778 TGAGAGTGGN
15291788 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
15291817 GAATATATGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:15291857 original size:20 final size:21
Alignment explanation
Indices: 15291815--15291857 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 21
15291805 ATATATATAT
*
15291815 ATGAATATATGCTGTGCATTG
1 ATGAATATATGCTGTGCAATG
* *
15291836 ATGAATA-ATGTTGTGTAATG
1 ATGAATATATGCTGTGCAATG
15291856 AT
1 AT
15291858 ATTGACTCGA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.33, C:0.05, G:0.23, T:0.40
Consensus pattern (21 bp):
ATGAATATATGCTGTGCAATG
Found at i:15291928 original size:42 final size:42
Alignment explanation
Indices: 15291868--15291969 Score: 134
Period size: 42 Copynumber: 2.4 Consensus size: 42
15291858 ATTGACTCGA
*
15291868 CTATGTGCGAGTAGGAGTG-AGCATAAGCCAATGCTGACCCGG
1 CTATGTGCGAGTGGGAGTGCA-CATAAGCCAATGCTGACCCGG
* * * *
15291910 TTATGTACGAGTGGGAGTGCACATAAGCCGATGCTGACTCGG
1 CTATGTGCGAGTGGGAGTGCACATAAGCCAATGCTGACCCGG
15291952 CTATGTGCGAGTAGGGAG
1 CTATGTGCGAGT-GGGAG
15291970 AAAATAAATC
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
42 45 0.88
43 6 0.12
ACGTcount: A:0.25, C:0.19, G:0.35, T:0.22
Consensus pattern (42 bp):
CTATGTGCGAGTGGGAGTGCACATAAGCCAATGCTGACCCGG
Found at i:15294488 original size:171 final size:172
Alignment explanation
Indices: 15294143--15299199 Score: 4707
Period size: 171 Copynumber: 29.6 Consensus size: 172
15294133 TATACCAACA
* * * *
15294143 GAAACATGAAGCGAAAACCATCCATTGACATGAAAAGTCCATTTATAGTCACTCATGCCTTTGAA
1 GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA
* * * * * * * * *
15294208 AGACTAGCTACTCACTTTAAGTGATTTTATAACCTTATAAATGATTTCAAGTTG-ATTTCTGTTT
66 AGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTTT
* * *
15294272 CGA-TTTTGGTTAAAACAAATCATACTTGGATATTTG-CCTCAG
131 C-ATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCCT-AG
* * * * * * *
15294314 GAAACGTGAATCGAAAACCATCCATTGACAAGGAAAGTCTATTTATAATCATTCATGCCTTCAAA
1 GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA
* * * *
15294379 AGTCTAGTTACTCACTTTAAATTGTTTTATAATCTTATAAATGATTTTAAATTTAATTTTTTTTT
66 AGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTTT
* * *
15294444 CATTTTTGGCTAAAACATATCA-AATTGGATGTTTGCCCCAG
131 CATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCCTAG
* * * * *
15294485 GAAATGTGAAGCGACAA-CCATCCATTGACAAGAAAAGTTCATTTATAGTCACTTATGCTTTTGA
1 GAAACGTGAAGCGA-AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGA
* * *
15294549 AAGACTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG-ATTTTTATT
65 AAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTT
* * * *
15294613 TCATTTTTGGTTAAAA-AAATCATAATTGGAAGTTT-TCCTTG
130 TCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCCTAG
* * * * * *
15294654 AGAAATGTAAAGCGAAAGCCATCCATTGACAATAAAAGTCCATTTATAATCACTTC-TACCTTTG
1 -GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCAC-TCATGCCTTCG
* * * * * *
15294718 AAGGACTAGTTACTCACTTTAAATGGTTTTATAATCTTGTAAATGATCTTGAATTTAA-TTTTTT
64 AAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTT
* * * * **
15294782 TTCATTTCTAGTTAAAACATATCATAATTAGATGCTTT-CCCTTT
129 TTCATTTTTGGTTAAAACAGATCATAATTGGATG-TTTGCCCTAG
* * * * * * * * *
15294826 GAAACATGAATCGAAAGCAATCCATTGACAAGAAAGGTCCACTTACAGTCACTTATGCCATCAAA
1 GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA
* * * * * * *
15294891 ATACTTGTTACTGGCTTTAAATTGTTTTATAAGCTTATAAATGATTTTAAGTGGAA-TTTTTTTT
66 AGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTTT
**
15294955 CATTTTTATTTAAAACAGATCATAATTGGATGTTTG-CCTCAG
131 CATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCCT-AG
* * * * * *
15294997 GAAACGTGAAGCGAAAAACCATTCATTGACAAGAAAAGTCCATTTATAGTGACTCAAGGCTTCAA
1 GAAACGTGAAGCG-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGA
* * *
15295062 AAGACTAGTTACTTGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA-TTTGTTT
65 AAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTT
* * * *
15295126 TCATTTTTGGCTAAAACATATCATAATTGGATGTTT-TCCTCAA
130 TCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCCT-AG
* * * * * * *
15295169 GATACGTGAAGCAAAAACCATGCACTGACAAGAAAAATCCATTTATAGTCACTCATGCCTTTGAA
1 GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA
* * * * **
15295234 AGACTAGTTACTGGTTTTAAGTGGTTTTATAATCTTGTAAATGATTTTAAATTG-ATTTCAATTT
66 AGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTT-TTTTT
* *
15295298 T-ATTTTTTGTTTAAAACAGATCATACTTGGAT-TTTG-CCTAGG
130 TCA-TTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCCTA-G
* * * * * * * *
15295340 GAAACATGAATCAAAAACCATCCATTGATAAGGAAAGTCCATTTATAGTTACTCATGCCTTCAAA
1 GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA
15295405 AGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTTT
66 AGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTTT
* * * * *
15295470 -TTTTTTGGCTAAAATATACCATAATTGGATGTTTGCCCTAG
131 CATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCCTAG
* *
15295511 GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCATTCATGCCTTCGAA
1 GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA
* * * * * * **
15295576 AGACTAATTACTTGCTTTAAATGGTTTTACAATCGTCTAAATGATTTTAAGTTGAA-TGGTTTTT
66 AGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTTT
* * ** *
15295640 CATTTTTGTTTCAAACAGATCATAATTGGATGTTTGCATTGG
131 CATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCCTAG
* * * * * * * * * *
15295682 GAAATGTGAAGCGAAAGCCATTCTTTGACATGAAAAGTCCATTTGTTGTCAATAATTCCTTTGAA
1 GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA
* * * *
15295747 AGACTAGTTACTCGCTTTAAAAGGTTTTACAATCTTATCAATGATTTTAAGTTGAA-TTTTTTTT
66 AGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTTT
* * *
15295811 -ATTTTTTGTTAAAACAGATCATAATTGGATGTTTG-TCTCG
131 CATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCCTAG
* * * * * * * * *
15295851 ACAAATGTGAAGCGAATGCCATCCATTTG-TAAGCAAAGTCCACTTATAGCCACTTATGCCTTTG
1 -GAAACGTGAAGCGAAAGCCATCCA-TTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCG
* * * * * *
15295915 AATGCCTAATTACTAGCTTTAAATGATTTTATAA-CTT-TAAAGATGATTTTAAGTTGAATTTTT
64 AAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTAT-AA-ATGATTTTAAATTGAATTTTT
* *** * * * *
15295978 TATT-ATTGTTTTACTGAAACAGATCATAATTTGATGTTTTG-CATTG
127 TTTTCATT-TTTGGTTAAAACAGATCATAATTGGATG-TTTGCCCTAG
* * * * *
15296024 GAAAATGTGAAGTGAAAGCCAT-CATTTGACAAGAAAAGTCCATTTATAGTCATTTATGCCTTCA
1 G-AAACGTGAAGCGAAAGCCATCCA-TTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCG
* * * * * *
15296088 AAAGCCTAATTACTTGCTTTAAATGGTTTTATAATCTTATAAATGATTTTTAGTTGAATTGTTTT
64 AAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTT
* * * * * *
15296153 TT-ATTTTTGGCTAAAACATATCATAATTGGATATTAGCCTTAA
129 TTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCCTAG
* * * * * * *
15296196 GAAAAGTGAAGTGATAGCCATCTATTGACAAGAAAAGTCCATTTATAGGCACTCATGCCCTCAAA
1 GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA
* * * * *
15296261 AGACTAGTTACTCGTTTTAAATGGTTTTATAATCTTCTAAATGATTTTGAGTT-AAATTTTTTTT
66 AGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTTT
* * * *
15296325 CACTTTTGGCT-AAACTAGATCATAATTGAATGTTTG-CCTCGG
131 CATTTTTGGTTAAAAC-AGATCATAATTGGATGTTTGCCCT-AG
* ** * * * * *
15296367 GAAACATGAAGCGAAAGCCATTTATTGACAAGAAAAGTTCATTTATAGTCGCTAATGCGTTTGAA
1 GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA
* * * * ** *
15296432 AGGCTAGTCACTCGC--TACAATGGTTTCATAATCTTATAAATAATTTTAAGCTAAATTTTTTTT
66 AGACTAGTTACTCGCTTTA-AATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTT
* * * * * * *
15296495 TCATTTCTAGCTAAAACAAATCTTAATTAGATGTTTG-CCTCG
130 TCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCCTAG
* * * * * *
15296537 AAAAATGTGAAGTGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTAAGTAATGCCTTCGA
1 -GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGA
* * * * *
15296602 AATACTAATTACTC-ATGTTAAAGGGTTTTATAATCTTATAAATGATTTTAAGTT-AATTTTTTT
65 AAGACTAGTTACTCGCT-TTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTT
* * * ** *
15296665 TTCATATTTGGTTAAAACAAATCATAAATGGATG-TTAACCTTG
129 TTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCCTAG
* * * * * *
15296708 AGAAATGTGAAGC-AAAGGCCAACTATTGACAAGAAAAGTTCATTTATAGTCACTCATACCTTCA
1 -GAAACGTGAAGCGAAA-GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCG
* * * * * * * *
15296772 AAAGCCTAGTTACTCACTTTAAGTGATTTTA-CACCTTTAAAAATTATTTTAAATTGAA--TTTT
64 AAAGACTAGTTACTCGCTTTAAATGGTTTTATAATC-TTATAAATGATTTTAAATTGAATTTTTT
* * * * *
15296834 TATCATTTTT-TTCTAAAATAGGTCAGAATTGGATGTTT-CCTCTA-
128 TTTCATTTTTGGT-TAAAACAGATCATAATTGGATGTTTGCC-CTAG
* * *
15296878 GAAACGTGAAAG-GAAAGCCATCCATTGACAAAAAAAGTCCATTTATAGTCGCTCATGCTTTCGA
1 GAAACGTG-AAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGA
* * * * *
15296942 AAGGCTAGTCACCCGCTTTAAATAGTTTTATAATCTTATAAATGATTTTAAGTTG-A-TTTTTTT
65 AAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTT
* ***
15297005 TCATTTTTGGTTAAAACAAATCATAATTGGATGTTTGAATTAG
130 TCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCCTAG
* * * * * *
15297048 GAAACGTAAAGCGAAAGCCATCCATTGACAAGAAAAGACTATTTATAGGCACTCATACCTTCAAA
1 GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA
* * * ** * * *
15297113 AGACTAGTTACTCACCTTAAATGCTTTTATAATCTTGCAAATGATGTTAAGTTGAGTTTTTTTTT
66 AGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGA-ATTTTTTTT
** * * * *
15297178 TCATTTTTGACTAAAATAGATCACAATTGGATGTTAG-CCTTG
130 TCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCCTAG
* * *
15297220 GAAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGGCACTCATGCTTTCGA
1 G-AAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGA
* * *
15297285 AAGACTAGTTACTCGCTTTAAATGGTTATATAATCTTCTAAATGATTTTGAATTGAA--TTTTTT
65 AAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTT
* *
15297348 T-ATTTTTGGGTAAAACAGATCATAATTGAATGTTTGCCTCTA-
130 TCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCC-CTAG
* * *
15297390 GAAACGTGAAGCGAAAGCCATCAATTAACAAGAAAAGTCCATTTATAGTCACTAATGCCTTCGAA
1 GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA
* * * ** * * * * *
15297455 AGGCTAGTCACTCTCCCTAAATGGTCTAATAATCTTATAAGTGATGTTAAGTTGAATTTTTTTTT
66 AGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAA-TTTTTTTT
* * *
15297520 TCATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCTTAA
130 TCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCCTAG
* * * ** * * * * *
15297563 GAAACATGAAGTGAAAACCATCCATTGACAAGAATGGTCCATTTATATTTAGTAATGCCTTTGAA
1 GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA
* * * *
15297628 AGACTAGTTACTC-ATGTTAAATGGTTTCATAATCTTATAAATGATTTTAAGTTGAA-TTTTATT
66 AGACTAGTTACTCGCT-TTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTT
* * * ** * *
15297691 TCATTTTTGGTTCAAACAAATGATAATTGGATAATTG-CTTTG
130 TCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCCTAG
* ** * * * * * * *
15297733 AGAAACATGAAATGAAAGGCTTCCATCGACAAGAAAAGTCTATTTATAATCACCCATGCCTTTGA
1 -GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGA
* * * ** * * * * *
15297798 AAGACTGGTTATTGGCTTTAAATCATTTTATAATCGTGTAAATGATTTTAAGTGGAATTGTTTTT
65 AAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTT
* * ** *
15297863 T-AGTTTTAGTTAAAACAGATCATAATTGGATGTTTGCATTGG
130 TCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCCTAG
** * * * * * *
15297905 GAAGGGTGAAG-GAAGGCCATCCATTGACACA-AAAAGTTCATTTGTTGTCACTCATGGCTTTGA
1 GAAACGTGAAGCGAAAGCCATCCATTGACA-AGAAAAGTCCATTTATAGTCACTCATGCCTTCGA
* * * * * *
15297968 AAGATTAGTTACTAGCTTTAAATGTTTTTAAAATCTTATCAATGATTTTAACTTGAATTTTTTTT
65 AAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAA--TTTTTT
* ** *
15298033 TTTCATTTTTGGGTAAAACAGATCATAATTGGATG-TTAACCTTG
128 TTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCCTAG
* * * * * *
15298077 AGAAACATGAAGC-AATAGCTATCCATTAACAAGAAAAGTACATTTATAG-CTGCTCATACCTTC
1 -GAAACGTGAAGCGAA-AGCCATCCATTGACAAGAAAAGTCCATTTATAGTC-ACTCATGCCTTC
* * * * *
15298140 GAAAGCCTAGTTACTCACTTTAAGTGATTTTATAA-CTTTAAAAATGATTTTAAATTGAATTTTT
63 GAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATC-TTATAAATGATTTTAAATTGAATTTTT
* ** * * * *
15298204 TGTTCATTTTTCATTCAAACAAATCATAATTGGAAGTTT-TCCTAGG
127 TTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCCTA-G
** * * * * *
15298250 GAAATATGAAGCGATAGCCATCCATTGAAAAGAAAAGTCCATTTATAGGCACTTATACCTTC-AA
1 GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA
* * * * * * * * *
15298314 AGGATTTGTTACTTGGTTTAAATGCTTTAATAATCTTGTAAATGATCTTAAGTTGAATTTTTTTT
66 A-GACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAA-TTTTTTT
* * * *
15298379 TTCATTTTTGGCTAAAATAGATCATAATTGGATG-TTACCCTTGG
129 TTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCC-TAG
* ** * * * *
15298423 GAAACATGAAGAAAAAGCCATCCATTGATAAGAAAAGTCCATTTAGAGGCACTTATGCCTTC-AA
1 GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA
* * *
15298487 AGACTAGTTAGC-CGCTTTAAATAGTTTTATAATCTTATAAATGATTTTGAGTTGAA-TTTTTTT
66 AGACTAGTTA-CTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTT
* * *
15298550 T-ATTTTTGGCTAAAACATATCATAATTGGATATTTGCCTCTA-
130 TCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCC-CTAG
* ** * * *
15298592 AAAACGTGAAGCGAAAATCATCCATTGATAAGAAAAGTTCATTTATAGGCACTCATGCCTTCGAA
1 GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA
* *
15298657 AGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTCTAAATGATTTTAAGTTGAA-TTTTTTTT
66 AGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTTT
*** * * *
15298721 CATTTTTTACTAAAATAGATGATAATTGGATGTTTGCCTTTA-
131 CATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCC-CTAG
* * *
15298763 GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTACATTCACTTATGCCTTCGAA
1 GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA
** * * * * *
15298828 AGACTAGTTACTCATTTTAAATGGTTTTATAATGTTGTAAATGATTTTAAGTT-AA-ATTCTTTT
66 AGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTTT
**
15298891 CATTTTTGGTTAAAACAGATTGTAATTGGATGTTTGCCTCTA-
131 CATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCC-CTAG
* * * *
15298933 GAAATGTGAAGCGAAAGCCATCCATTGACATGAAAAGTCCATATATATTCACTCATGCCTTCGAA
1 GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA
* * * * *
15298998 AGACTAGTTACTCACTTTAAATGGTTTTATAATGTTGTAAACGATTTTAAGTT-AA--TTTTTTT
66 AGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTTT
* **
15299060 CAATTTTGGTTAAAACAGATTTTAATTGGATGTTTGCCTCTA-
131 CATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCC-CTAG
* * * * * * *
15299102 AAAATGTGAAGCGAAAGCCATTCATTGACAAGAAAAGTCCATTTATAGGCACTTATTCCTTCAAA
1 GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA
* * *
15299167 AGATTGGTTACTCGCTTTAAATGATTTTATAAT
66 AGACTAGTTACTCGCTTTAAATGGTTTTATAAT
15299200 TGTCACGACC
Statistics
Matches: 4033, Mismatches: 748, Indels: 212
0.81 0.15 0.04
Matches are distributed among these distances:
168 2 0.00
169 488 0.12
170 826 0.20
171 1582 0.39
172 518 0.13
173 530 0.13
174 86 0.02
175 1 0.00
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.38
Consensus pattern (172 bp):
GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA
AGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTTT
CATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCCTAG
Found at i:15301656 original size:28 final size:30
Alignment explanation
Indices: 15301600--15301659 Score: 88
Period size: 28 Copynumber: 2.1 Consensus size: 30
15301590 TTTTTGAAAT
*
15301600 TTACACTTTTGTCCCCATAAAAGTGAAAAA
1 TTACACTTTTGTCCCCATAAAACTGAAAAA
*
15301630 TTACATTTTTG-CCCCA-AAAACTGAAAAA
1 TTACACTTTTGTCCCCATAAAACTGAAAAA
15301658 TT
1 TT
15301660 GCCCATAGAC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 13 0.46
29 5 0.18
30 10 0.36
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (30 bp):
TTACACTTTTGTCCCCATAAAACTGAAAAA
Found at i:15303075 original size:54 final size:54
Alignment explanation
Indices: 15302992--15303150 Score: 273
Period size: 54 Copynumber: 2.9 Consensus size: 54
15302982 TCATCACGTG
*
15302992 CATCTCACCCAGCTCATGTGCATCCCACCACATCGTGCACATAGTCGAACATCC
1 CATCTCACCCAGCTCATGTGCATCCCACCACATCGTGCACATAGCCGAACATCC
* * *
15303046 TATCTCACCCATCTCATGTGCATCCCACCACATCGTGCACATAGCCGGACATCC
1 CATCTCACCCAGCTCATGTGCATCCCACCACATCGTGCACATAGCCGAACATCC
*
15303100 CATCTCACCCAGCTCATGTGCATCCCACCACATCATGCACATAGCCGAACA
1 CATCTCACCCAGCTCATGTGCATCCCACCACATCGTGCACATAGCCGAACA
15303151 GCATCACCAC
Statistics
Matches: 97, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 97 1.00
ACGTcount: A:0.26, C:0.41, G:0.13, T:0.20
Consensus pattern (54 bp):
CATCTCACCCAGCTCATGTGCATCCCACCACATCGTGCACATAGCCGAACATCC
Found at i:15306590 original size:341 final size:339
Alignment explanation
Indices: 15305148--15311505 Score: 5491
Period size: 341 Copynumber: 18.6 Consensus size: 339
15305138 AGGTATTACA
* * * * * * *
15305148 CCATTGACACGAAAAGTCTACTTATTGTCACTGATGCCTTTC-AAAGATTAGTTACTCGCTTTAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC-TTCGAAAGACTAGTTACTCACTTTAA
* * * * * *
15305212 ATGGTTTAAAAATCTTATCAATGATTTTAAGTAGAATTTGTTTTTTTATTTTTGGATAAAACAGA
65 ATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA--T-TTTTTTCATTTTTGGTTAAAACAGA
* * * * ** * **
15305277 TCATAATTAGATGTTAGCCTTGAGAAATGTGAAGTAAAAGCCATCCATTGGCAAGAAAAGTATAT
127 TCATAATTGGATGTTTGCCTTGGGAAAAGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCAT
* * * * * * * *
15305342 TTATAGCCATTCAT-CCTTTGAAAGCCTAGTTACTCACTTTAAGTGATTTTATAACTTCA-AAAC
192 TTATAGTCACTCATGCC-TTCAAAGACTAGTTACTCACTTTAAATGGTTTTATAATTTTATAAA-
* * * * **
15305405 TGATCTTAAGTTGATTTTTTTTTTCATTTTTGGCTTAAGA-AGATCATAATTAGATGTAAGCCTC
255 TGATTTTAAGTTGAATTTTTTTTT-ATTTTTGGC-TAAAACAGATCATAATTGGATGTTTGCCTC
*
15305469 -AGGAAACATGAAGCGAAAGCCAT
318 GA-GAAACGTGAAGC-AAAGCCAT
* * * * *
15305492 CCATTGACAAGAAAAGTCCATTAATAGTCACTCATACCTTCAAAAGACTAGTTACTCGCTTTACA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACTTTAAA
* * * * * *
15305557 TGATTTTATAATCTTGTGAATGATCTTAAGTTGAATTTTCTTTTTCATTTTTAGCTAAAACAGAT
66 TGGTTTTATAATCTTATAAATGATTTTAAGTTGAA--TT-TTTTTCATTTTTGGTTAAAACAGAT
*
15305622 CATAATTGGATGTTAGCCTTGGGAAACA-TGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCAT
128 CATAATTGGATGTTTGCCTTGGGAAA-AGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCAT
* * * * * *
15305686 TTATAGTCACTCATACCTTCAAAGGACTAGTTAGTCGCTTTAAATGCTTTTATAATCTTGTAAAT
192 TTATAGTCACTCATGCCTTCAAA-GACTAGTTACTCACTTTAAATGGTTTTATAATTTTATAAAT
* * * * *
15305751 GATCTTAAGTTGAATTTTTTTTTCATTTTTTGCTAAAACAAATCATAGTTGGATGTTTGCCTTGA
256 GATTTTAAGTTGAATTTTTTTTT-ATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCTCGA
* * *
15305816 G-AACTTAAAGCGAATGCCAT
320 GAAACGTGAAGC-AAAGCCAT
** * ** *
15305836 CCATTGACAAGAAAAGTTTATTTATAGACACTCATGCCTTTAAAAGACTAATTACTCACTTTAAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACTTTAAA
* * * *
15305901 TGGTTTTATAATCTTGTAAA-GGTTCTTAAGTTGAATTTCTTTTCATTTTTGGCTAAAACATATC
66 TGGTTTTATAATCTTATAAATGATT-TTAAGTTGAATTT-TTTTCATTTTTGGTTAAAACAGATC
* * * * * * *
15305965 ATAATTGGATGTTAGCCTTTGGAAACGTGAAGCAAAAGCTATCCATTGATAAGAAAAATCCATTT
129 ATAATTGGATGTTTGCCTTGGGAAAAGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTT
* * ** * * * *
15306030 ATAGCCACTCATGCCCTTGAAAG-CTTAGTTACTCACTTTATGTGATTTTATAACTTCAAAAATG
194 ATAGTCACTCATG-CCTTCAAAGAC-TAGTTACTCACTTTAAATGGTTTTATAATTTTATAAATG
* * * * * * *
15306094 ATTTTAAATTGAATTTTTTTTCATTTTTGG-T---TCAGATCATAGTTGGAAGTTTACCTCGGGA
257 ATTTTAAGTTGAATTTTTTTTTATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCTCGAGA
*
15306155 AACATGAAGCGAAAGCCAT
322 AACGTGAAGC-AAAGCCAT
* **
15306174 CCATCGACAAGAAAAGTCCATTTATAAACACTCATGCCTTCGAAAGACTAGTTACTCACTTTAAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACTTTAAA
* * * * *
15306239 TGGCTTTATAATCATGTAAATGATTTTAAGTTGAATTGTTTTTCAATTTTAGTTAAAACAGATCA
66 TGGTTTTATAATCTTATAAATGATTTTAAGTTGAATT-TTTTTCATTTTTGGTTAAAACAGATCA
* * * * *
15306304 TAGTTGGATGTTTGCATTGGGAAAAGTGAAGTGAAAGCCATCTATTGACATGAAAAGTCCATTTA
130 TAATTGGATGTTTGCCTTGGGAAAAGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTA
* * * * * * * * *
15306369 TTGCCACTGATCCCTTTAAGAGATTAGTTACTCGCTTTAAATGGTTTAATAATTTTATCAATGAT
195 TAGTCACTCATGCCTTCAA-AGACTAGTTACTCACTTTAAATGGTTTTATAATTTTATAAATGAT
* * *
15306434 TTTAAGTTG-ATTTTTTTTTATTTTTGGTTAAAATAGATCATAATTGGATGTTTGCCTCAAGAAA
259 TTTAAGTTGAATTTTTTTTTATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCTCGAGAAA
*
15306498 CGTGAAGCAAATGACAT
324 CGTGAAGCAAA-GCCAT
* * * **
15306515 CCATTGAGAAGAAAAGTTCATTTATAGTCACTCATGCC-TCTAAAAGACTAGTTACTCTTTTTAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC-GAAAGACTAGTTACTCACTTTAA
* * * * *
15306579 ATGGTTTTATAATCTTGTAAAGGATCTTAAGTTGAATTTCTTTTCATTTTTAGCTAAAACAGATC
65 ATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTT-TTTTCATTTTTGGTTAAAACAGATC
* * ** * * *
15306644 ATCATTGAATGTTAACCTTGGGAAACA-TGAAGTGAAACCCATCAATTGACAAGAAAAGTCCATT
129 ATAATTGGATGTTTGCCTTGGGAAA-AGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATT
* * * * *
15306708 TATAGGCACTCATGCTTTTGAAAAACTAGTTACTCACTTTAAATGGTTTTAT-ATTCTTCTAAAT
193 TATAGTCACTCATGC-CTTCAAAGACTAGTTACTCACTTTAAATGGTTTTATAATT-TTATAAAT
* * * * * *
15306772 GATTTTGAGTTGAA--TTTTTTTA-TTTTGACTAAAACATATTATAATTGGATGTTTGCCTTGGG
256 GATTTTAAGTTGAATTTTTTTTTATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCTCGAG
* * *
15306834 TAACATGAAGTAAAAGCCAT
321 AAACGTGAAG-CAAAGCCAT
* * * ** *
15306854 CTATTGACAAGAAAAGTCCATTTATAGTCACTAATGCCTTCGAAAGGCTAGCCACTCTCTTTAAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACTTTAAA
* ** *
15306919 TGGTTTTCTAATCTTATAAATGATGCTAAGTTGAACTTTGTTTTCATTTTTGGTTAAAATAGATC
66 TGGTTTTATAATCTTATAAATGATTTTAAGTTGAA-TTT-TTTTCATTTTTGGTTAAAACAGATC
* *** **
15306984 ATAGTTGGATGTTTGCCTCCAGAAATTTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTT
129 ATAATTGGATGTTTGCCTTGGGAAAAGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTT
* * * * * * * * **
15307049 ATAATTACTCATACCTTGGAAGGACTAGTTACACGCTTTAAA-GGCTTTTATAATGTTGGAAATG
194 ATAGTCACTCATGCCTT-CAAAGACTAGTTACTCACTTTAAATGG-TTTTATAATTTTATAAATG
* * * *
15307113 ATCTTAAGTTGAATTTTTTTTTCATTTTTGGCTAAAACAGATCATAATTGGTTGTTGGCTTC-AG
257 ATTTTAAGTTGAATTTTTTTTT-ATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCTCGA-
*
15307177 GAAACATGAAGCGAAAGCCAT
320 GAAACGTGAAGC-AAAGCCAT
* * * * * * **
15307198 CCATGGTCAAGAAATGTCCATTTATAGGCACTCATGCATTCAAAAGACTAGTTACTTGCTTTAAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACTTTAAA
* * *
15307263 TGGTTTTATAATCTTCTAAATGATTTTAAGTTGAATTTTTTTTCATTCTTGGCT-AAACTAGATC
66 TGGTTTTATAATCTTATAAATGATTTTAAGTTGAA-TTTTTTTCATTTTTGGTTAAAAC-AGATC
** ** * *
15307327 ATAATTGGATGTTTGCCTCAGGAAAAAAGAAGCGAAAGCCATCCATTGTCATGAAAAGTCCATTT
129 ATAATTGGATGTTTGCCTTGGGAAAAGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTT
* * * * * *
15307392 ATAGTCACTAATGCCTTCAAAAGGCTAGTCACTCACTTTACATGGTTTCATAATCTTATAAATGA
194 ATAGTCACTCATGCCTTC-AAAGACTAGTTACTCACTTTAAATGGTTTTATAATTTTATAAATGA
* * *
15307457 TTTTAAGTTGAATTTTGCATTCT-TTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCTTGAG
258 TTTTAAGTTGAATTTT--TTTTTATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCTCGAG
* *
15307521 AAACATGAAGTGAAAGCCAT
321 AAACGTGAAG-CAAAGCCAT
* * * * *
15307541 CCATTGGCAAGGAAAGTCCATTTATAGTCAGTAATGCCTTTGAAAGACTAGTTACTCA-TGTTAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACT-TTAA
* * *
15307605 AGGGTTTTATGATCTTATAAATGATTTTAAGTTGAATTTTGCTTTTATTTTTGGTTAAAACAGAT
65 ATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTT--TTTCATTTTTGGTTAAAACAGAT
* * **
15307670 CATAATTGGATGTTTGCCTTGAGAAATGTGAAGTAAAAGCCATCCATTGACAAGAAAAGTCCATT
128 CATAATTGGATGTTTGCCTTGGGAAAAGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATT
* * * * * * ** * *
15307735 TATGGTCACTCATGCCTTCAAAAGCCTAGTTACTCGCTTTAAGTGATTTTACAACATAAAAAATG
193 TATAGTCACTCATGCCTTC-AAAGACTAGTTACTCACTTTAAATGGTTTTATAATTTTATAAATG
* * * * *
15307800 ATTTTAAATTGAA--TTCTTTTATTTTTGGCTAAAACAAATCATAATTGGATGTTTACCTCTAGA
257 ATTTTAAGTTGAATTTTTTTTTATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCTCGAGA
* *
15307863 AACATGAAACGAAAGCCAT
322 AACGTGAAGC-AAAGCCAT
* * * * *
15307882 CCATTGACAAGAAAAGTCCATTTGTAGTCACTCATACCTTC-AAAGGAGTAGTTACACGCTTTAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA-GACTAGTTACTCACTTTAA
** * * * * * * * * *
15307946 ATACTTTTATAATCTTGTAAATTATCTCAAGTTGATTTATTTTTTCATTTTTAGCTGAAACAAAT
65 ATGGTTTTATAATCTTATAAATGATTTTAAGTTGA-AT-TTTTTTCATTTTTGGTTAAAACAGAT
* ** ** * * * * *
15308011 CATAATTGGAAGTAAGCCTCAGGAAACGTGAAGTGAAAGCCATCAATTGACATGAAAGGTCCATT
128 CATAATTGGATGTTTGCCTTGGGAAAAGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATT
* * ** * * *
15308076 TATAGTCA-TGCATGCCTTCAAAAGCCTAATTACTTGCTTTAAATCGTTTTATAATCTTCTAAAT
193 TATAGTCACT-CATGCCTTC-AAAGACTAGTTACTCACTTTAAATGGTTTTATAATTTTATAAAT
* * * * * *
15308140 GATTTTGAGTT-AATTTTTTCTTTCATTCTTGACTAATATAGATGATAATTGGATGTTTGCCTCG
256 GATTTTAAGTTGAATTTTTT-TTT-ATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCTCG
15308204 AGAAACGTGAAGCAAAAGCCAT
319 AGAAACGTGAAGC-AAAGCCAT
* * * * * * *
15308226 CTATTGACAAGAAAAGTCCATTTATAGCCACTCATGCCCTCGAAAGCCTAGTTACTTACTTCAAG
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACTTTAAA
** * * * *
15308291 TTATTTTAT-ATTTTCAAAAATGAATTTGAA-TTGAATTTTTTTTGTCATTTTTGGTTCAAACAG
66 TGGTTTTATAATCTT-ATAAATG-ATTTTAAGTTGAA--TTTTTT-TCATTTTTGGTTAAAACAG
* * * * * * * *
15308354 ATCCTACTTGGAAGTTTGCCTTGGTAAACA-TAAAGC-AAACCCATCCAATGAGAAGAAAAGTCC
126 ATCATAATTGGATGTTTGCCTTGGGAAA-AGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCC
* * * * * *
15308417 TTTTAGAGTCACTAATGCCTTCGGAAGGCTAGTCACTCACTTTAAATGGTTTT-TAATTTTATAA
190 ATTTATAGTCACTCATGCCTTC-AAAGACTAGTTACTCACTTTAAATGGTTTTATAATTTTATAA
* * * *
15308481 ATGATTTTAAGTTGAA-TTTTTTTCATTTTTGGCTAAAACAGGTCATAATTGGATGTTTGTCTCT
254 ATGATTTTAAGTTGAATTTTTTTTTATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCTCG
*
15308545 AGAAACGTGAAGGGAAA-CCAT
319 AGAAACGTGAA-GCAAAGCCAT
* * * * * * * *
15308566 CCATTGATAGGAAAATTTCATTTATAGTCAGTAATACCTTCGAAAGACTAGTTACTCACGTTAAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACTTTAAA
* *
15308631 TGGTTTTATAATCTTATAAATGATTTTAAGTTTAATTTCATTTT-ATTTTTGGTTAAAACATATC
66 TGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTT--TTTTCATTTTTGGTTAAAACAGATC
** * ** * * * * * * *
15308695 ATAATTGGATAATTGCCTTGAGAAACA-TGAAATGAAAGCCTTCTATCGATAAAAAAAGTTCAAT
129 ATAATTGGATGTTTGCCTTGGGAAA-AGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATT
* * * * * ** *
15308759 TATAATCAC-CATGACTTCAAAAGACTAGTTACCCATTTTGAATGGTTTTATAATCATGTAAATG
193 TATAGTCACTCATGCCTTC-AAAGACTAGTTACTCACTTTAAATGGTTTTATAATTTTATAAATG
* * * * * *
15308823 ATTTTAAGTTGAATTGTTTTTCATTTTTTGTTAAAACATATCATAATTTGATGTTTGCCTCGAGA
257 ATTTTAAGTTGAATTTTTTTTTATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCTCGAGA
* * *
15308888 AATGTGAGGCAAATGCCAC
322 AACGTGAAGCAAA-GCCAT
** * * * *
15308907 CCATTGATGAGAAAAGTTCATTTGTAGTCACTCATGCCTTTGAAGGACTAGTTACTCGA-TTTAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTC-ACTTTAA
** * ** *
15308971 ATGGTTTTATAATAATGTAAATGATTTTAAGTTGAATTTTTTTTTTTTTTGATTAAAACAGATCA
65 ATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTCATTTTTGGTTAAAACAGATCA
* **
15309036 TAATTGGATGTTTGCCTCT--AAAAATGTGAAGC-AAAGGCCATCCATT-ATCAACCAAAGTCCA
130 TAATTGGATGTTTGCCT-TGGGAAAA-GTGAAGCGAAA-GCCATCCATTGA-CAAGAAAAGTCCA
* * * * * * *
15309097 TTTATAGTCACTCATGCCTTTGAATGCCTAGTTACTCACTTTAAGTGATTTTATAACTTTAAAAA
191 TTTATAGTCACTCATGCC-TTCAAAGACTAGTTACTCACTTTAAATGGTTTTATAATTTTATAAA
* * * * * * *
15309162 TGATTTTAAGTTGAA-TTATTTTAATATTT--CTTAAAACAAATCATAATTTGATGTTTTGCATT
255 TGATTTTAAGTTGAATTTTTTTTTATTTTTGGC-TAAAACAGATCATAATTGGATG-TTTGCCTC
*
15309224 G-GAAAATGTGAAGCAAAAGCCAT
318 GAG-AAACGTGAAGC-AAAGCCAT
* * * * * *
15309247 CAATTGAGAAGAAAAGTCCATTTATAGTCATTCATGCCTTCGAAAGCCTAATTACTCGCTTTAAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACTTTAAA
* *** * *
15309312 TGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTATTTCCTACATGATTAAAATAGATCA
66 TGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTT-TTTCATTTTTGGTTAAAACAGATCA
** * * * * * *
15309377 TAATTGGATAATTG-CTTGGTGAAACGTGAAACGAAAGCCTTCCATCGATAAGAAAAGTTCATTT
130 TAATTGGATGTTTGCCTTGG-GAAAAGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTT
* * * * * * * * *
15309441 ATAGTCACTCATACCTTTGAAAGATTGGTTACTCGCTTTAAATAGTTTTATAATCATGA-AAATA
194 ATAGTCACTCATGCC-TTCAAAGACTAGTTACTCACTTTAAATGGTTTTATAAT-TTTATAAATG
* * * ** *
15309505 ATTTTAAGTTGAATTGTTTTTCATTTTTAGCTAAAATTGATCATAATTGAATGTTTTGTCCT-GA
257 ATTTTAAGTTGAATTTTTTTTTATTTTTGGCTAAAACAGATCATAATTGGATG-TTTG-CCTCGA
* *
15309569 GAAATGTGAAGCGAAGCCAT
320 GAAACGTGAAGCAAAGCCAT
* * * ** *
15309589 CCATTGACAAAAAAAGTCCATTTATAGTCACTCAGGCCTTTGACGGACTAGTTACTCGCTTTAAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACTTTAAA
* * * * * ** * * * *
15309654 TGGTTTTGTTATCTTGTCAATGATATTAAGTCAAAATTCTTTTCAATTTTGGCTAAAACAAATCA
66 TGGTTTTATAATCTTATAAATGATTTTAAGT-TGAATTTTTTTCATTTTTGGTTAAAACAGATCA
** * * * * *
15309719 TAATTGGATGTTAACCTTGAGAAACGTGAAGTGAAAGCCATCCATCGGCAAGAAAAAGT-CATTT
130 TAATTGGATGTTTGCCTTGGGAAAAGTGAAGCGAAAGCCATCCATTGACAAG-AAAAGTCCATTT
* * * * * * * * *
15309783 ATAGCCACTCGTGCCTTCAAAAGCCTAATTACTCACTTTAAGTGATTTTATAACTTCAAAAATGA
194 ATAGTCACTCATGCCTTC-AAAGACTAGTTACTCACTTTAAATGGTTTTATAATTTTATAAATGA
* * * * ** * *
15309848 TTTTAAATTGAATTTTTTTTCATTCTTT-GTTCAAACACCTCATAATTGG-TAGTTTGCCTTGGG
258 TTTTAAGTTGAATTTTTTTTTATT-TTTGGCTAAAACAGATCATAATTGGAT-GTTTGCCTCGAG
*
15309911 AAACATGAAGCAAAAGCCAT
321 AAACGTGAAGC-AAAGCCAT
* * * ** * * * *
15309931 CCATTAATAAGAAAAG-CAAATTTATAGTCACTCATAACTTCGAAAGACTACTCACCCACTATAA
1 CCATTGACAAGAAAAGTC-CATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACTTTAA
* * * * *
15309995 ATGCTTTTATAACCTTGTAAATGATCTTAAGTTGAATTTGTTTTTCATTTTTGGCTAAAACAGAT
65 ATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA-TT-TTTTTCATTTTTGGTTAAAACAGAT
* * * ** * *
15310060 TATAATCGGATGTTAGCCTCAGGAAATGTGAAGCGAAAGCCATCCATTGACAAGAAAAGCCCATT
128 CATAATTGGATGTTTGCCTTGGGAAAAGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATT
* ** * * * * * * *
15310125 TATAGTCACTCATGCTTTTGGAAGGCAAGTCACTCACTTTAAATAGTTTTACAATCTTATCAATG
193 TATAGTCACTCATGC-CTTCAAAGACTAGTTACTCACTTTAAATGGTTTTATAATTTTATAAATG
* * * * *
15310190 ATTTTAAGTTGAA-TTTTTTTCATTCTTT-GTTAAAATAAATCATAATTAGATGTTTGCCTCGAG
257 ATTTTAAGTTGAATTTTTTTTTATT-TTTGGCTAAAACAGATCATAATTGGATGTTTGCCTCGAG
*
15310253 AAACGTGAAGCAAAAACCAT
321 AAACGTGAAGC-AAAGCCAT
* * * * * * **
15310273 CCACTAATAAGAAAAGTCCATTGATAGTCACTCATGTCTTCAAAAGACTAGTTTGTCACTTTAAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACTTTAAA
* * * *
15310338 TTGTTTTATAATCATATAAATGATTTTAAGTTGAATTTTTTTTTATTTTTGGTTAAAACAAATCA
66 TGGTTTTATAATCTTATAAATGATTTTAAGTTGAA-TTTTTTTCATTTTTGGTTAAAACAGATCA
* * ** * *
15310403 AAATTGGATGCTTATCTTGGGAAACA-TGAAGCAAAAGTCATCCATTGACAAGAAAAGTCCATTT
130 TAATTGGATGTTTGCCTTGGGAAA-AGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTT
* * * * * * * *
15310467 ATAGTCAAC-CATAACTTTAAAAGGCTAGTTACACGCTTTAAATGGTTTTACAATCTTATAAATG
194 ATAGTC-ACTCAT-GCCTTCAAAGACTAGTTACTCACTTTAAATGGTTTTATAATTTTATAAATG
* * *
15310531 ATTTTAAGTTGAATTTTTTTTTTTCATTTTTGGTTAAAACAGATCATAATTAGATGTTTGCCTCA
257 ATTTTAAGTTGAA--TTTTTTTTT-ATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCTCG
* **
15310596 AGAAATGTGAAGCGAAAGATAT
319 AGAAACGTGAAGC-AAAGCCAT
* ** * * * *
15310618 CCATTGGCAAGAAAAGTTTATTTATAGTCACTCATACCTTCAAAAGCCTAGTTACTCGCTTTAAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACTTTAAA
* * ** *
15310683 TGGTTTTATAA-CTTCAAAAATGATTTTAAATTGAATTTGTTTTTCATTTTTCATTCAAACAGAT
66 TGGTTTTATAATCTT-ATAAATGATTTTAAGTTGAA-TT-TTTTTCATTTTTGGTTAAAACAGAT
* * * * * * * *
15310747 TATAATTGGAAGTTGGCCTTGAGAAATGTGAAGTGAAATCCATCCATTGACAGGAAAAG-CTCAT
128 CATAATTGGATGTTTGCCTTGGGAAAAGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTC-CAT
* * * * * * *
15310811 TTATAGTCACTCATACCTTCAAATGAATAGTTACTTAGTTTAAATTGTTTTATAA-TCTGTAAAT
192 TTATAGTCACTCATGCCTTCAAA-GACTAGTTACTCACTTTAAATGGTTTTATAATTTTATAAAT
* * * * * * * * * * *
15310875 AATCTTAAGTTGAATTGTTTTTTAATTTTTAGCTAAAAGATAACAGAATTGGATGCTAGCCTCGG
256 GATTTTAAGTTGAATT-TTTTTTTATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCTCGA
* *
15310940 GAATCATGAAGCAAAAGCCAT
320 GAAACGTGAAGC-AAAGCCAT
* * * *
15310961 CCATTAACAA-AAAAGTCCATTTA-ATGTCACTAATGCCTTC-AACAGGCTAGTTATTCACTTTA
1 CCATTGACAAGAAAAGTCCATTTATA-GTCACTCATGCCTTCGAA-AGACTAGTTACTCACTTTA
* * * * * *
15311023 AATGATTTTATAATCGTATAAATGATTTTAAGTTGATTTTTTTTCATTTTTGGCTAACACAAATC
64 AATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTCATTTTTGGTTAAAACAGATC
* * * * * * *
15311088 ATAATTGGATGTTTACCTTGAGAAACA-TGAAGCAAAAACCATCCAATGACATGAAAAGTTCATT
129 ATAATTGGATGTTTGCCTTGGGAAA-AGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATT
* * * * *
15311152 TATAGTCAATTATGCCTTCGAAAGACTAGTTACTCACGTTAAATGG--TTATAATCTTATAACTG
193 TATAGTCACTCATGCCTTC-AAAGACTAGTTACTCACTTTAAATGGTTTTATAATTTTATAAATG
* * * * *
15311215 ATTTTAAGTTGAATTTTATTTCATTTTAGGTTGAAAA-AGATCATAATTGGATGTTTGCCTTG-G
257 ATTTTAAGTTGAATTTTTTTTTATTTTTGGCT-AAAACAGATCATAATTGGATGTTTGCCTCGAG
*
15311278 AAAACGTGAAGTGAAAGCCAT
321 -AAACGTGAAG-CAAAGCCAT
** ** * * * ** * * * *
15311299 GAATCAAAAAGAAAAGTCTATTTATTGTCGTTGATGCCTTTGAAAGGCTAGTTACTCTCTTTAAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACTTTAAA
* * * *
15311364 TGGTTTTACAATCTTATTAATGATTTTAAGTTGAAATTTGTTTTCATTTTTAGTTAAAACATATC
66 TGGTTTTATAATCTTATAAATGATTTTAAGTTG-AATTT-TTTTCATTTTTGGTTAAAACAGATC
* *** * * *
15311429 ATAAATGGATGTTTGCC-TCAAAAAACATGAAGCGAATGCCATCCAGTTG-CAAGCAAAGTCCAT
129 ATAATTGGATGTTTGCCTTGGGAAAA-GTGAAGCGAAAGCCATCCA-TTGACAAGAAAAGTCCAT
*
15311492 TTATAGTAACTCAT
192 TTATAGTCACTCAT
15311506 TGTAAAGCCC
Statistics
Matches: 4851, Mismatches: 1005, Indels: 319
0.79 0.16 0.05
Matches are distributed among these distances:
337 47 0.01
338 366 0.08
339 326 0.07
340 589 0.12
341 1078 0.22
342 725 0.15
343 559 0.12
344 758 0.16
345 298 0.06
346 105 0.02
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.37
Consensus pattern (339 bp):
CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACTTTAAA
TGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTCATTTTTGGTTAAAACAGATCAT
AATTGGATGTTTGCCTTGGGAAAAGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTAT
AGTCACTCATGCCTTCAAAGACTAGTTACTCACTTTAAATGGTTTTATAATTTTATAAATGATTT
TAAGTTGAATTTTTTTTTATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCTCGAGAAACG
TGAAGCAAAGCCAT
Found at i:15307048 original size:172 final size:171
Alignment explanation
Indices: 15305148--15311505 Score: 5846
Period size: 171 Copynumber: 37.2 Consensus size: 171
15305138 AGGTATTACA
* * * * * * *
15305148 CCATTGACACGAAAAGTCTACTTATTGTCACTGATGCCTTTC-AAAGATTAGTTACTCGCTTTAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC-TTCGAAAGACTAGTTACTCACTTTAA
* * * * * *
15305212 ATGGTTTAAAAATCTTATCAATGATTTTAAGTAGAATTTGTTTTTTTATTTTTGGATAAAACAGA
65 ATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA-TT-TTTTTTCATTTTTGGTTAAAACAGA
* * * **
15305277 TCATAATTAGATGTTAGCCTTGAGAAATGTGAAGTAAAAGCCAT
128 TCATAATTGGATGTTTGCCTTGAGAAACGTGAAGCGAAAGCCAT
* ** * * * * *
15305321 CCATTGGCAAGAAAAGTATATTTATAGCCATTCAT-CCTTTGAAAGCCTAGTTACTCACTTTAAG
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACTTTAAA
* * * *
15305385 TGATTTTATAA-CTTCA-AAACTGATCTTAAGTTGATTTTTTTTTTCATTTTTGGCTTAAGA-AG
66 TGGTTTTATAATCTT-ATAAA-TGATTTTAAGTTGA-ATTTTTTTTCATTTTTGG-TTAAAACAG
* ** * *
15305447 ATCATAATTAGATGTAAGCC-TCAGGAAACATGAAGCGAAAGCCAT
127 ATCATAATTGGATGTTTGCCTTGA-GAAACGTGAAGCGAAAGCCAT
* * * * *
15305492 CCATTGACAAGAAAAGTCCATTAATAGTCACTCATACCTTCAAAAGACTAGTTACTCGCTTTACA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACTTTAAA
* * * * * *
15305557 TGATTTTATAATCTTGTGAATGATCTTAAGTTGAATTTTCTTTTTCATTTTTAGCTAAAACAGAT
66 TGGTTTTATAATCTTATAAATGATTTTAAGTTGAA-TTT-TTTTTCATTTTTGGTTAAAACAGAT
* * *
15305622 CATAATTGGATGTTAGCCTTGGGAAACATGAAGCGAAAGCCAT
129 CATAATTGGATGTTTGCCTTGAGAAACGTGAAGCGAAAGCCAT
* * *
15305665 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTC-AAAGGACTAGTTAGTCGCTTTAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA-GACTAGTTACTCACTTTAA
* * * * * *
15305729 ATGCTTTTATAATCTTGTAAATGATCTTAAGTTGAATTTTTTTTTCATTTTTTGCTAAAACAAAT
65 ATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA-TTTTTTTTCATTTTTGGTTAAAACAGAT
* * * *
15305794 CATAGTTGGATGTTTGCCTTGAG-AACTTAAAGCGAATGCCAT
129 CATAATTGGATGTTTGCCTTGAGAAACGTGAAGCGAAAGCCAT
** * ** *
15305836 CCATTGACAAGAAAAGTTTATTTATAGACACTCATGCCTTTAAAAGACTAATTACTCACTTTAAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACTTTAAA
* * * * *
15305901 TGGTTTTATAATCTTGTAAA-GGTTCTTAAGTTGAATTTCTTTTCATTTTTGGCTAAAACATATC
66 TGGTTTTATAATCTTATAAATGATT-TTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATC
* * *
15305965 ATAATTGGATGTTAGCCTTTG-GAAACGTGAAGCAAAAGCTAT
130 ATAATTGGATGTTTGCC-TTGAGAAACGTGAAGCGAAAGCCAT
* * *
15306007 CCATTGATAAGAAAAATCCATTTATAGCCACTCATGCCCTT-GAAAG-CTTAGTTACTCACTTTA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATG-CCTTCGAAAGAC-TAGTTACTCACTTTA
** * * *
15306070 TGTGATTTTATAA-CTTCAAAAATGATTTTAAATTGAATTTTTTTTCATTTTTGGTT----CAGA
64 AATGGTTTTATAATCTT-ATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGA
* * * * * *
15306130 TCATAGTTGGAAGTTTACCTCGGGAAACATGAAGCGAAAGCCAT
128 TCATAATTGGATGTTTGCCTTGAGAAACGTGAAGCGAAAGCCAT
* **
15306174 CCATCGACAAGAAAAGTCCATTTATAAACACTCATGCCTTCGAAAGACTAGTTACTCACTTTAAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACTTTAAA
* * * * * *
15306239 TGGCTTTATAATCATGTAAATGATTTTAAGTTGAATTGTTTTTCAATTTTAGTTAAAACAGATCA
66 TGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCA
* * * * *
15306304 TAGTTGGATGTTTGCATTGGGAAAAGTGAAGTGAAAGCCAT
131 TAATTGGATGTTTGCCTTGAGAAACGTGAAGCGAAAGCCAT
* * * * * * * * *
15306345 CTATTGACATGAAAAGTCCATTTATTGCCACTGATCCCTT-TAAGAGATTAGTTACTCGCTTTAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA-AGACTAGTTACTCACTTTAA
* * * * *
15306409 ATGGTTTAATAATTTTATCAATGATTTTAAGTTG-ATTTTTTTTTATTTTTGGTTAAAATAGATC
65 ATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATC
** *
15306473 ATAATTGGATGTTTGCCTCAAGAAACGTGAAGC-AAATGACAT
130 ATAATTGGATGTTTGCCTTGAGAAACGTGAAGCGAAA-GCCAT
* * * **
15306515 CCATTGAGAAGAAAAGTTCATTTATAGTCACTCATGCC-TCTAAAAGACTAGTTACTCTTTTTAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC-GAAAGACTAGTTACTCACTTTAA
* * * * * *
15306579 ATGGTTTTATAATCTTGTAAAGGATCTTAAGTTGAATTTCTTTTCATTTTTAGCTAAAACAGATC
65 ATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATC
* * ** * * * *
15306644 ATCATTGAATGTTAACCTTGGGAAACATGAAGTGAAACCCAT
130 ATAATTGGATGTTTGCCTTGAGAAACGTGAAGCGAAAGCCAT
* * * * *
15306686 CAATTGACAAGAAAAGTCCATTTATAGGCACTCATGCTTTTGAAAAACTAGTTACTCACTTTAAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACTTTAAA
* * * ** * *
15306751 TGGTTTTATATTCTTCTAAATGATTTTGAGTTGAA-TTTTTTT-A-TTTTGACTAAAACATATTA
66 TGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCA
* * * **
15306813 TAATTGGATGTTTGCCTTGGGTAACATGAAGTAAAAGCCAT
131 TAATTGGATGTTTGCCTTGAGAAACGTGAAGCGAAAGCCAT
* * * ** *
15306854 CTATTGACAAGAAAAGTCCATTTATAGTCACTAATGCCTTCGAAAGGCTAGCCACTCTCTTTAAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACTTTAAA
* ** * *
15306919 TGGTTTTCTAATCTTATAAATGATGCTAAGTTGAACTTTGTTTTCATTTTTGGTTAAAATAGATC
66 TGGTTTTATAATCTTATAAATGATTTTAAGTTGAA-TTTTTTTTCATTTTTGGTTAAAACAGATC
* ** **
15306984 ATAGTTGGATGTTTGCCTCCAGAAATTTGAAGCGAAAGCCAT
130 ATAATTGGATGTTTGCCTTGAGAAACGTGAAGCGAAAGCCAT
* * * * * * *
15307026 CCATTGACAAGAAAAGTCCATTTATAATTACTCATACCTTGGAAGGACTAGTTACACGCTTTAAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACTTTAAA
* ** * *
15307091 -GGCTTTTATAATGTTGGAAATGATCTTAAGTTGAATTTTTTTTTCATTTTTGGCTAAAACAGAT
66 TGG-TTTTATAATCTTATAAATGATTTTAAGTTGAA-TTTTTTTTCATTTTTGGTTAAAACAGAT
* * * *
15307155 CATAATTGGTTG-TTGGCTTCAGGAAACATGAAGCGAAAGCCAT
129 CATAATTGGATGTTTGCCTTGA-GAAACGTGAAGCGAAAGCCAT
* * * * * * **
15307198 CCATGGTCAAGAAATGTCCATTTATAGGCACTCATGCATTCAAAAGACTAGTTACTTGCTTTAAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACTTTAAA
* * *
15307263 TGGTTTTATAATCTTCTAAATGATTTTAAGTTGAATTTTTTTTCATTCTTGGCT-AAACTAGATC
66 TGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAAC-AGATC
* ***
15307327 ATAATTGGATGTTTGCC-TCAGGAAAAAAGAAGCGAAAGCCAT
130 ATAATTGGATGTTTGCCTTGA-GAAACGTGAAGCGAAAGCCAT
* * * * * * *
15307369 CCATTGTCATGAAAAGTCCATTTATAGTCACTAATGCCTTCAAAAGGCTAGTCACTCACTTTACA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACTTTAAA
* ** * *
15307434 TGGTTTCATAATCTTATAAATGATTTTAAGTTGAATTTTGCATTCTTTTTTGGCTAAAACAGATC
66 TGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTT-TTTTCATTTTTGGTTAAAACAGATC
* *
15307499 ATAATTGGATGTTTGCCTTGAGAAACATGAAGTGAAAGCCAT
130 ATAATTGGATGTTTGCCTTGAGAAACGTGAAGCGAAAGCCAT
* * * * *
15307541 CCATTGGCAAGGAAAGTCCATTTATAGTCAGTAATGCCTTTGAAAGACTAGTTACTCA-TGTTAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACT-TTAA
* *
15307605 AGGGTTTTATGATCTTATAAATGATTTTAAGTTGAATTTTGCTTTT-ATTTTTGGTTAAAACAGA
65 ATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTT--TTTTCATTTTTGGTTAAAACAGA
* **
15307669 TCATAATTGGATGTTTGCCTTGAGAAATGTGAAGTAAAAGCCAT
128 TCATAATTGGATGTTTGCCTTGAGAAACGTGAAGCGAAAGCCAT
* * * * *
15307713 CCATTGACAAGAAAAGTCCATTTATGGTCACTCATGCCTTCAAAAGCCTAGTTACTCGCTTTAAG
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACTTTAAA
* * * * * * * *
15307778 TGATTTTACAA-CATAAAAAATGATTTTAAATTGAA-TTCTTTT-ATTTTTGGCTAAAACAAATC
66 TGGTTTTATAATC-TTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATC
* * *
15307840 ATAATTGGATGTTTACCTCT-AGAAACATGAAACGAAAGCCAT
130 ATAATTGGATGTTTGCCT-TGAGAAACGTGAAGCGAAAGCCAT
* * * * *
15307882 CCATTGACAAGAAAAGTCCATTTGTAGTCACTCATACCTTC-AAAGGAGTAGTTACACGCTTTAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA-GACTAGTTACTCACTTTAA
** * * * * * * * * *
15307946 ATACTTTTATAATCTTGTAAATTATCTCAAGTTGATTTATTTTTTCATTTTTAGCTGAAACAAAT
65 ATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATT-TTTTTTCATTTTTGGTTAAAACAGAT
* ** * *
15308011 CATAATTGGAAGTAAGCC-TCAGGAAACGTGAAGTGAAAGCCAT
129 CATAATTGGATGTTTGCCTTGA-GAAACGTGAAGCGAAAGCCAT
* * * * * * **
15308054 CAATTGACATGAAAGGTCCATTTATAGTCA-TGCATGCCTTCAAAAGCCTAATTACTTGCTTTAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACT-CATGCCTTCGAAAGACTAGTTACTCACTTTAA
* * * * ** * *
15308118 ATCGTTTTATAATCTTCTAAATGATTTTGAGTT-AATTTTTTCTTTCATTCTTGACTAATATAGA
65 ATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA-TTTTT-TTTCATTTTTGGTTAAAACAGA
* * *
15308182 TGATAATTGGATGTTTGCCTCGAGAAACGTGAAGCAAAAGCCAT
128 TCATAATTGGATGTTTGCCTTGAGAAACGTGAAGCGAAAGCCAT
* * * * * * *
15308226 CTATTGACAAGAAAAGTCCATTTATAGCCACTCATGCCCTCGAAAGCCTAGTTACTTACTTCAAG
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACTTTAAA
** * * * *
15308291 TTATTTTAT-ATTTTCAAAAATGAATTTGAA-TTGAATTTTTTTTGTCATTTTTGGTTCAAACAG
66 TGGTTTTATAATCTT-ATAAATG-ATTTTAAGTTGAA-TTTTTTT-TCATTTTTGGTTAAAACAG
* * * * * *
15308354 ATCCTACTTGGAAGTTTGCCTTG-GTAAACATAAAGC-AAACCCAT
127 ATCATAATTGGATGTTTGCCTTGAG-AAACGTGAAGCGAAAGCCAT
* * * * * * * *
15308398 CCAATGAGAAGAAAAGTCCTTTTAGAGTCACTAATGCCTTCGGAAGGCTAGTCACTCACTTTAAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACTTTAAA
* * *
15308463 TGGTTTT-TAATTTTATAAATGATTTTAAGTTGAA-TTTTTTTCATTTTTGGCTAAAACAGGTCA
66 TGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCA
* *
15308526 TAATTGGATGTTTGTCTCT-AGAAACGTGAAGGGAAA-CCAT
131 TAATTGGATGTTTGCCT-TGAGAAACGTGAAGCGAAAGCCAT
* * * * * * * *
15308566 CCATTGATAGGAAAATTTCATTTATAGTCAGTAATACCTTCGAAAGACTAGTTACTCACGTTAAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACTTTAAA
* * *
15308631 TGGTTTTATAATCTTATAAATGATTTTAAGTTTAATTTCATTTT-ATTTTTGGTTAAAACATATC
66 TGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTT-TTTTTCATTTTTGGTTAAAACAGATC
** * ** *
15308695 ATAATTGGATAATTGCCTTGAGAAACATGAAATGAAAGCCTT
130 ATAATTGGATGTTTGCCTTGAGAAACGTGAAGCGAAAGCCAT
* * * * * * * * * * * *
15308737 CTATCGATAAAAAAAGTTCAATTATAATCAC-CATGACTTCAAAAGACTAGTTACCCATTTTGAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACTTTAAA
* * * * *
15308801 TGGTTTTATAATCATGTAAATGATTTTAAGTTGAATTGTTTTTCATTTTTTGTTAAAACATATCA
66 TGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCA
* * * * *
15308866 TAATTTGATGTTTGCCTCGAGAAATGTGAGGC-AAATGCCAC
131 TAATTGGATGTTTGCCTTGAGAAACGTGAAGCGAAA-GCCAT
** * * * *
15308907 CCATTGATGAGAAAAGTTCATTTGTAGTCACTCATGCCTTTGAAGGACTAGTTACTCGA-TTTAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTC-ACTTTAA
** * * *
15308971 ATGGTTTTATAATAATGTAAATGATTTTAAGTTGAATTTTTTTT-TTTTTTGATTAAAACAGATC
65 ATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATC
* *
15309035 ATAATTGGATGTTTGCCTCT-AAAAATGTGAAGC-AAAGGCCAT
130 ATAATTGGATGTTTGCCT-TGAGAAACGTGAAGCGAAA-GCCAT
** * * *
15309077 CCATT-ATCAACCAAAGTCCATTTATAGTCACTCATGCCTTTGAATGCCTAGTTACTCACTTTAA
1 CCATTGA-CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACTTTAA
* * * * * * * *
15309141 GTGATTTTATAA-CTTTAAAAATGATTTTAAGTTGAA-TTATTTTAATATTT-CTTAAAACAAAT
65 ATGGTTTTATAATC-TTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGAT
* * * *
15309203 CATAATTTGATGTTTTGCATTG-GAAAATGTGAAGCAAAAGCCAT
129 CATAATTGGATG-TTTGCCTTGAG-AAACGTGAAGCGAAAGCCAT
* * * * * *
15309247 CAATTGAGAAGAAAAGTCCATTTATAGTCATTCATGCCTTCGAAAGCCTAATTACTCGCTTTAAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACTTTAAA
* * *** * *
15309312 TGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTATTTCCTACATGATTAAAATAGATCA
66 TGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCA
** * * *
15309377 TAATTGGATAATTG-CTTGGTGAAACGTGAAACGAAAGCCTT
131 TAATTGGATGTTTGCCTT-GAGAAACGTGAAGCGAAAGCCAT
* * * * * * * *
15309418 CCATCGATAAGAAAAGTTCATTTATAGTCACTCATACCTTTGAAAGATTGGTTACTCGCTTTAAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACTTTAAA
* * * * * * **
15309483 TAGTTTTATAATCATGA-AAATAATTTTAAGTTGAATTGTTTTTCATTTTTAGCTAAAATTGATC
66 TGGTTTTATAATC-TTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATC
* *
15309547 ATAATTGAATGTTTTGTCC-TGAGAAATGTGAAGCG-AAGCCAT
130 ATAATTGGATG-TTTG-CCTTGAGAAACGTGAAGCGAAAGCCAT
* * * ** *
15309589 CCATTGACAAAAAAAGTCCATTTATAGTCACTCAGGCCTTTGACGGACTAGTTACTCGCTTTAAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACTTTAAA
* * * * * ** * * * * *
15309654 TGGTTTTGTTATCTTGTCAATGATATTAAGTCAAAATTCTTTTCAATTTTGGCTAAAACAAATCA
66 TGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCA
** *
15309719 TAATTGGATGTTAACCTTGAGAAACGTGAAGTGAAAGCCAT
131 TAATTGGATGTTTGCCTTGAGAAACGTGAAGCGAAAGCCAT
* * * * * * *
15309760 CCATCGGCAAGAAAAAGT-CATTTATAGCCACTCGTGCCTTCAAAAGCCTAATTACTCACTTTAA
1 CCATTGACAAG-AAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACTTTAA
* * * * * **
15309824 GTGATTTTATAA-CTTCAAAAATGATTTTAAATTGAATTTTTTTTCATTCTTT-GTTCAAACACC
65 ATGGTTTTATAATCTT-ATAAATGATTTTAAGTTGAATTTTTTTTCATT-TTTGGTTAAAACAGA
* * *
15309887 TCATAATTGG-TAGTTTGCCTTGGGAAACATGAAGCAAAAGCCAT
128 TCATAATTGGAT-GTTTGCCTTGAGAAACGTGAAGCGAAAGCCAT
* * * ** * * * *
15309931 CCATTAATAAGAAAAG-CAAATTTATAGTCACTCATAACTTCGAAAGACTACTCACCCACTATAA
1 CCATTGACAAGAAAAGTC-CATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACTTTAA
* * * * *
15309995 ATGCTTTTATAACCTTGTAAATGATCTTAAGTTGAATTTGTTTTTCATTTTTGGCTAAAACAGAT
65 ATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTT-TTTTTCATTTTTGGTTAAAACAGAT
* * * * *
15310060 TATAATCGGATGTTAGCC-TCAGGAAATGTGAAGCGAAAGCCAT
129 CATAATTGGATGTTTGCCTTGA-GAAACGTGAAGCGAAAGCCAT
* * * * * * *
15310103 CCATTGACAAGAAAAGCCCATTTATAGTCACTCATGCTTTTGGAAGGCAAGTCACTCACTTTAAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACTTTAAA
* * * * *
15310168 TAGTTTTACAATCTTATCAATGATTTTAAGTTGAA-TTTTTTTCATTCTTT-GTTAAAATAAATC
66 TGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCATT-TTTGGTTAAAACAGATC
* * * *
15310231 ATAATTAGATGTTTGCCTCGAGAAACGTGAAGCAAAAACCAT
130 ATAATTGGATGTTTGCCTTGAGAAACGTGAAGCGAAAGCCAT
* * * * * * **
15310273 CCACTAATAAGAAAAGTCCATTGATAGTCACTCATGTCTTCAAAAGACTAGTTTGTCACTTTAAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACTTTAAA
* * * *
15310338 TTGTTTTATAATCATATAAATGATTTTAAGTTGAATTTTTTTTTATTTTTGGTTAAAACAAATCA
66 TGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCA
* * ** * * * *
15310403 AAATTGGATGCTTATCTTGGGAAACATGAAGCAAAAGTCAT
131 TAATTGGATGTTTGCCTTGAGAAACGTGAAGCGAAAGCCAT
** ** * * *
15310444 CCATTGACAAGAAAAGTCCATTTATAGTCAAC-CATAACTTTAAAAGGCTAGTTACACGCTTTAA
1 CCATTGACAAGAAAAGTCCATTTATAGTC-ACTCATGCCTTCGAAAGACTAGTTACTCACTTTAA
*
15310508 ATGGTTTTACAATCTTATAAATGATTTTAAGTTGAATTTTTTTTTTTCATTTTTGGTTAAAACAG
65 ATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA---TTTTTTTTCATTTTTGGTTAAAACAG
* ** * **
15310573 ATCATAATTAGATGTTTGCCTCAAGAAATGTGAAGCGAAAGATAT
127 ATCATAATTGGATGTTTGCCTTGAGAAACGTGAAGCGAAAGCCAT
* ** * * * *
15310618 CCATTGGCAAGAAAAGTTTATTTATAGTCACTCATACCTTCAAAAGCCTAGTTACTCGCTTTAAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACTTTAAA
* * ** *
15310683 TGGTTTTATAA-CTTCAAAAATGATTTTAAATTGAATTTGTTTTTCATTTTTCATTCAAACAGAT
66 TGGTTTTATAATCTT-ATAAATGATTTTAAGTTGAATTT-TTTTTCATTTTTGGTTAAAACAGAT
* * * * * *
15310747 TATAATTGGAAGTTGGCCTTGAGAAATGTGAAGTGAAATCCAT
129 CATAATTGGATGTTTGCCTTGAGAAACGTGAAGCGAAAGCCAT
* * * * *
15310790 CCATTGACAGGAAAAG-CTCATTTATAGTCACTCATACCTTC-AAATGAATAGTTACTTAGTTTA
1 CCATTGACAAGAAAAGTC-CATTTATAGTCACTCATGCCTTCGAAA-GACTAGTTACTCACTTTA
* * * * * * * * *
15310853 AATTGTTTTATAATC-TGTAAATAATCTTAAGTTGAATTGTTTTTTAATTTTTAGCTAAAAGATA
64 AATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATT-TTTTTTCATTTTTGGTTAAAACAGA
* * * * * * * * *
15310917 ACAGAATTGGATGCTAGCCTCGGGAATCATGAAGCAAAAGCCAT
128 TCATAATTGGATGTTTGCCTTGAGAAACGTGAAGCGAAAGCCAT
* * * *
15310961 CCATTAACAA-AAAAGTCCATTTA-ATGTCACTAATGCCTTC-AACAGGCTAGTTATTCACTTTA
1 CCATTGACAAGAAAAGTCCATTTATA-GTCACTCATGCCTTCGAA-AGACTAGTTACTCACTTTA
* * * * *
15311023 AATGATTTTATAATCGTATAAATGATTTTAAGTTG-ATTTTTTTTCATTTTTGGCTAACACAAAT
64 AATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGAT
* * * *
15311087 CATAATTGGATGTTTACCTTGAGAAACATGAAGCAAAAACCAT
129 CATAATTGGATGTTTGCCTTGAGAAACGTGAAGCGAAAGCCAT
* * * * * *
15311130 CCAATGACATGAAAAGTTCATTTATAGTCAATTATGCCTTCGAAAGACTAGTTACTCACGTTAAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACTTTAAA
* * *
15311195 TGG--TTATAATCTTATAACTGATTTTAAGTTGAATTTTATTTCATTTTAGGTTGAAAA-AGATC
66 TGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTT-AAAACAGATC
*
15311257 ATAATTGGATGTTTGCCTTG-GAAAACGTGAAGTGAAAGCCAT
130 ATAATTGGATGTTTGCCTTGAG-AAACGTGAAGCGAAAGCCAT
** ** * * * ** * * * *
15311299 GAATCAAAAAGAAAAGTCTATTTATTGTCGTTGATGCCTTTGAAAGGCTAGTTACTCTCTTTAAA
1 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACTTTAAA
* * * * *
15311364 TGGTTTTACAATCTTATTAATGATTTTAAGTTGAAATTTGTTTTCATTTTTAGTTAAAACATATC
66 TGGTTTTATAATCTTATAAATGATTTTAAGTTG-AATTTTTTTTCATTTTTGGTTAAAACAGATC
* ** * * *
15311429 ATAAATGGATGTTTGCCTCAAAAAACATGAAGCGAATGCCAT
130 ATAATTGGATGTTTGCCTTGAGAAACGTGAAGCGAAAGCCAT
* *
15311471 CCAGTTG-CAAGCAAAGTCCATTTATAGTAACTCAT
1 CCA-TTGACAAGAAAAGTCCATTTATAGTCACTCAT
15311506 TGTAAAGCCC
Statistics
Matches: 5027, Mismatches: 1007, Indels: 303
0.79 0.16 0.05
Matches are distributed among these distances:
166 6 0.00
167 129 0.03
168 270 0.05
169 383 0.08
170 892 0.18
171 1559 0.31
172 1387 0.28
173 260 0.05
174 141 0.03
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.37
Consensus pattern (171 bp):
CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCACTTTAAA
TGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCA
TAATTGGATGTTTGCCTTGAGAAACGTGAAGCGAAAGCCAT
Found at i:15312970 original size:15 final size:16
Alignment explanation
Indices: 15312940--15312974 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
15312930 ATAAAATATT
15312940 ATGTTTTTCAATTAAA
1 ATGTTTTTCAATTAAA
* *
15312956 ATGTTTTTTAATAAAA
1 ATGTTTTTCAATTAAA
15312972 ATG
1 ATG
15312975 AGATTTATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.40, C:0.03, G:0.09, T:0.49
Consensus pattern (16 bp):
ATGTTTTTCAATTAAA
Found at i:15315391 original size:172 final size:171
Alignment explanation
Indices: 15314335--15318114 Score: 3250
Period size: 172 Copynumber: 22.1 Consensus size: 171
15314325 CGAGTCGTGA
* * * * * * *
15314335 CACTCATACCTTTGAAACCCTAGTTACTCACTTTAAGTGATTTTATAA-CTTTAAAAATGATTTT
1 CACTCATGCCTTCGAAA-GCTAGTTACTCGCTTTAAATGGTTTTATAATC-TTATAAATGATTTT
* * * * * * *
15314399 AAATT-ATTTTTTTTTTCATTTTTTGTTAGAACAAATCATAACTT-GATGTTTTGCATTG-GAAA
64 AAGTTGAATTTTTTTTTCATTTTTGGCTAAAACAGATCATAA-TTGGATG-TTTGCCTTGAG-AA
* ** * * *
15314461 ACGTGAAGCGAAAGTTATCAATTGACAAGAAAAGTCCATATATAAT
126 ACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
* * * * ** * *
15314507 CATTCATGCCTTCAAAAGCCTAATTACTCACTTTAAATGGTTCAATAATCTTTTAGATGATTTTA
1 CACTCATGCCTTCGAAAG-CTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTA
* * * **
15314572 AGTTGAACCTTTTTTTTTTCATTTTTGGCTAAAAAAGATCACAATTGGATGTTAGCCTCAAGAAA
65 AGTTGAA---TTTTTTTTTCATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAA
* *
15314637 CATGAAGTGAGAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
127 CATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
* * * * *
15314682 TAGTAATGCCTTCGAAAGACTAGTTACTC-ATGTTAAA-GGATTTTGTAATCTTATAAATGATTT
1 CACTCATGCCTTCGAAAG-CTAGTTACTCGCT-TTAAATGG-TTTTATAATCTTATAAATGATTT
* * *
15314745 TAAGTTGAA-TTTTTTTTCATTTTTGGTTAAAACAAATCATAATTGGATGTTCGCCTGTGA-AAA
63 TAAGTTGAATTTTTTTTTCATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCT-TGAGAAA
15314808 CATGAAGCGAAAGCCATCC-TTGACAAGAAAAGTCCATTTATAGT
127 CATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
* * * *
15314852 CACTCATGCCTTCGGAAGGCTAGTCACTCGCTTTAAATGGTTTTATAACCTTATAAATAATTTTA
1 CACTCATGCCTTC-GAAAGCTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTA
* *** * ** * *
15314917 AGTTGAA-TTTTATTTCATTTTTTATTAAAACATATTGTAATTGGATAATTT-CCTTAAGAAACA
65 AGTTGAATTTTTTTTTCATTTTTGGCTAAAACAGATCATAATTGGAT-GTTTGCCTTGAGAAACA
* ** * *
15314980 TGAAACGAAAGCTTTCCATCGACAAGAAAAGTCCATTTATTGT
129 TGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
* * * *
15315023 CACTTATGCCTTTGAAAGATTAGTTACTCGCTTTAAATGGTTTTATAATCCTATAAATGATTTTA
1 CACTCATGCCTTCGAAAG-CTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTA
* * * * *
15315088 AGTTGAA-TTGTTTTTCATTTTTGGTTAAAATAGATCATAATTGGATGTTTGCATT-AGGAAACG
65 AGTTGAATTTTTTTTTCATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCTTGA-GAAACA
*
15315151 TGAAGCGAAAGCCATCCATTGACACGAAAAGTCCATTTATTA-T
129 TGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTA-TAGT
* * * * ** * * *
15315194 CATTGATGTCTTTGAAATATTAGTTACTCGCTTTAAATGGATTTAAAATCTTATCAATGATTTTA
1 CACTCATGCCTTCGAAA-GCTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTA
* ** * * *
15315259 AGTTAAATTTTTTTTTCATTTTCAGATAAAACAGATCATAATTGGATGTTAGGCTTGAGAAACAT
65 AGTTGAATTTTTTTTTCATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACAT
* * * * *
15315324 GAAGTGAAAGCCATTCATTAACAAGAAAAGTCTATTTATAGC
130 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
*** * *
15315366 CACTCATGCCTTCGAAAGCTTAGTTACAAACTTTAAATGATTTTATAA-CTTCAAAAATGATTTT
1 CACTCATGCCTTCGAAAGC-TAGTTACTCGCTTTAAATGGTTTTATAATCTT-ATAAATGATTTT
* * * * * * *** * *
15315430 AAATTAAATTTTCTTTTTCATTTTTTGTTCAAACAGATCATAATTGGAAGTTTG-GGAGGGATAC
64 AAGTTGAATTTT-TTTTTCATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAAC
* ** * *
15315494 GTGAAGTAAAAGCCATCAATTGATAAGAAAAGTCCATTTATAGT
128 ATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
* * * * * *
15315538 CACTCATACCTTCGAAGGACTAGTTACTCGCTTTAAATGCTTTTATAGTCTTGTAAATGATCTTA
1 CACTCATGCCTTCGAAAG-CTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTA
* * * ** * ** * * **
15315603 AGTTGAA-TTTTTATTCATTTTTGGCTGAAACAGATCATAGTTACATGTTAGTGTCGGGAAATGT
65 AGTTGAATTTTTTTTTCATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACAT
* * * * *
15315667 GAAGCAAAAGCCATCCATGGACAAGAAAAGTTCATTGATAGG
130 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
* * ** * * * * *
15315709 CATTTATGCCTTTAAAAGACTGGTTACTCGTTTTACATGGTTTTATAATCTTAT-AAT-CTTATA
1 CACTCATGCCTTCGAAAG-CTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATT-TT
* * *
15315772 AAGGATATTGAGTTGATTTTTT--TTTTTGGCTAAAACAGATCATAATTGGATATTTGCCTTTG-
64 AA-G---TTGAATT-TTTTTTTCATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCC-TTGA
* * *
15315834 GAAACATGAAACGAAAGCCATTCGTTGACAAGAAAAGTCCATTTATAG-
123 GAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
* * * * * * *
15315882 CGACTCATGCTTTCAAAAGCCTAGTTACTCACTTCAAGTGATTTTATAA-CTTGAAAAATGATTT
1 C-ACTCATGCCTTCGAAAG-CTAGTTACTCGCTTTAAATGGTTTTATAATCTT-ATAAATGATTT
* * * * ** *
15315946 TATA-TTGAATTTTTTTTTTCA-TTTTAGTTCAAACAGATCATAATTGGAAGTTTGCCAAGGGAA
63 TA-AGTTGAA-TTTTTTTTTCATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCTTGAGAA
* * **
15316009 ACGTGAAGTGAAAGTTATCCATTGACAAGAAAAGTCCATTTATAGT
126 ACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
* * * * * * * **
15316055 CACTCATACCATCGAAGGACTAGTTTCTCACTTTAAATGCTTTTATAATCTTGTAAATGATCGTA
1 CACTCATGCCTTCGAAAG-CTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTA
* * *
15316120 AGTTGAATTTTTTTTTTCATTTTTGGCTGAAACAGATCATAGTTGGATGTTAGCCTT-ACGAAAC
65 AGTTGAA-TTTTTTTTTCATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCTTGA-GAAAC
* * * * *
15316184 ATGTAGTGAAAGCCATCCATCGACAAGAAAAGTCAATTTATAGG
128 ATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
* * * * * * *
15316228 CATTTATGCCTTCAAAAGACT-GATTATTTGCTTTAAATGGTTTGATAATCTTAGAAATGATTTT
1 CACTCATGCCTTCGAAAG-CTAG-TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTT
* * * *
15316292 GAGTTGAATTTTTTTTTCATTTTTGGGTAAAACATATCATAATTGGATGTTTGCCTATGA-AAAT
64 AAGTTGAATTTTTTTTTCATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCT-TGAGAAAC
* * * * *
15316356 ATGAAGTGAAAGCCATCCATGGATAAGAAAAGTTCATTTATTGT
128 ATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
* * * * * *
15316400 CACTCATGCCTTTGGAACGCTAGTCACTCGCTTTAAATAGTTTTATAACCTTATAAATAATTTTA
1 CACTCATGCC-TTCGAAAGCTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTA
* * * **
15316465 AGTTGAA-TTTTATTTCATTTTTTG-TGAAAACAGATCAGAATTGGATAATTGCCTTGAGAAACA
65 AGTTGAATTTTTTTTTCATTTTTGGCT-AAAACAGATCATAATTGGATGTTTGCCTTGAGAAACA
* * *
15316528 TGAAACGAAAGCCTTCCATTGACAAGAAAAGTCCATTTATTGT
129 TGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
* *
15316571 CACTCATGCCTTTGAAAGACT-GATTACTCGCTTTAAATGGTTTTATAATCCTATAAATGATTTT
1 CACTCATGCCTTCGAAAG-CTAG-TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTT
** * * *
15316635 AAGTTGAATTAATTTTT-ATTTTTGGGTAAAATAGATCATAATTGGATGTTTGCATT-AGGAAAC
64 AAGTTGAATTTTTTTTTCATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCTTGA-GAAAC
* * * * *
15316698 GTGAAGCAAAAGTCATCCATCGACACGAAAAGTCCATTTATTA-T
128 ATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTA-TAGT
* * * * * * * *
15316742 CACTGATGCCTTTGAAAGATTAGTTACTCACTTTAATTGGATTTAAAATCTTATCAATGATTTTA
1 CACTCATGCCTTCGAAAG-CTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTA
* * * *
15316807 AGTTGAATTTGTTTTTT-ATTTTTGGATAAAACAGATCATCAA-TGGATGTTAGGCTCGAGAAAC
65 AGTTGAATTT-TTTTTTCATTTTTGGCTAAAACAGATCAT-AATTGGATGTTTGCCTTGAGAAAC
* * * *
15316870 ATGAAGTGAAAGCCATTCATTGACAAGAAAAGTCTATTTATAGC
128 ATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
* * *** * * *
15316914 CACTCATGCTTTTGAAAGCCTAGTTACAAACTTTAAATGATTTTATTA-CTTCAAAAATGATTTT
1 CACTCATGCCTTCGAAAG-CTAGTTACTCGCTTTAAATGGTTTTATAATCTT-ATAAATGATTTT
* * * * * *** * *
15316978 AAATTAAATTTTCTTTTTCATTTTTTGTTCAAACAGATCATAATTGGATGTTTG-GGAGGGATAC
64 AAGTTGAATTTT-TTTTTCATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAAC
* * * *
15317042 GTGAAGCAAAAGCCATCCATTGATAAGAAAAGTCCATTTATAAT
128 ATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
* * * * *
15317086 CACTCATACCTTCGAAGGGCTAGTTACTCGCTTTAAATGCTTTTATAATCTTGTAAATGATCTTA
1 CACTCATGCCTTCGAA-AGCTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTA
* * * * * * ** * * **
15317151 AGTTGAA-TTTTTTTTCATTTTTGGCTGAAACGGATAATAGTTGCATGTTAGTGTCGCGAAATGT
65 AGTTGAATTTTTTTTTCATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACAT
* *
15317215 GAAGCGAAAGCCATCCATTGACAAGAAAAGTTCATTTATAGG
130 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
* * * * *
15317257 CATTTATGCCTTCAAAAGACTAGTTACTCGCTTTACATGGTTTTATAATCTTAT-AAT-CTTATA
1 CACTCATGCCTTCGAAAG-CTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATT-T-
* * ** * * *
15317320 AAAGATATTG-AGTTGATTTT--TTTTTGGCTTAAACATATCATAATTGGATATTTGCCTTTG-G
63 TAAG---TTGAATTTTTTTTTCATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCC-TTGAG
**
15317381 AAACATGAAGCGAAAGCCATCTGTTGACAAGAAAAGTCCATTTATAG-
124 AAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
* * * * * * * *
15317428 CTACTTATACCTTCAAAAGCCTAGTTACTCACTTCAAGTGATTTTATAA-CTTGAAAAATGATTT
1 C-ACTCATGCCTTCGAAAG-CTAGTTACTCGCTTTAAATGGTTTTATAATCTT-ATAAATGATTT
* * * **
15317492 TATA-TTGAATTTTTTTTTCA-TTTTGGTTCAAACAGATCATAATTGGAAGTTTGCCAAG-GAAA
63 TA-AGTTGAATTTTTTTTTCATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAA
* * ** *
15317554 CGTGAAGTGAAAGTTATCCATTGACAAGAAAAATCCATTTATAGT
127 CATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
* * * * * * * *
15317599 CACTCATACCATCGAAGGACTAGTTTCTCACTTTAAATGCTTTTATAATCTTGTAAATGATCTTA
1 CACTCATGCCTTCGAAAG-CTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTA
* * ** *
15317664 AGTTG-ATTTTTTTTTCATTTTTGGCTAAAACAGATCATAGTTGGATGTTAGCCTCAAGAAACGT
65 AGTTGAATTTTTTTTTCATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACAT
15317728 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAG-
130 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
* * * * * *
15317769 -------GACTTCAAAAGACT-GATTATTCGCTTTAAATGGTTTGATAATCTTAGAAATGAGTTT
1 CACTCATGCCTTCGAAAG-CTAG-TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTT
* * * *
15317826 GAGTTTAATTTTTTTTTCATTTTT-GCATAAAACAGATCATAATTGGATATTTGCCACTG-G-AA
64 AAGTTGAATTTTTTTTTCATTTTTGGC-TAAAACAGATCATAATTGGATGTTTGCC-TTGAGAAA
* * *
15317888 CTATAAAGCAAAAGCCATCC-TTGGACAAGAAAAGTCCATTTTATAGG
127 C-ATGAAGCGAAAGCCATCCATT-GACAAGAAAAGTCCA-TTTATAGT
* * *
15317935 CACTCATGCCTTCGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATCTTTTAAATAATTTTG
1 CACTCATGCCTTCGAAAG-CTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTA
* * *
15318000 AGTT-AA-TTTATTTTCTATTTTTGGCTAAAATAGATCATAATTGGATGTTTGCCTCGAGAAACA
65 AGTTGAATTTTTTTTTC-ATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACA
*
15318063 TGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTC-TTTATATT
129 TGAAGCGAAAGCCATCCATTGACAAGAAAAGTC-CATTTATAGT
15318106 CACTCATGC
1 CACTCATGC
15318115 TGAAATACCC
Statistics
Matches: 2905, Mismatches: 582, Indels: 243
0.78 0.16 0.07
Matches are distributed among these distances:
162 1 0.00
163 52 0.02
164 73 0.03
165 7 0.00
169 20 0.01
170 359 0.12
171 871 0.30
172 964 0.33
173 284 0.10
174 123 0.04
175 110 0.04
176 41 0.01
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (171 bp):
CACTCATGCCTTCGAAAGCTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAA
GTTGAATTTTTTTTTCATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACATG
AAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
Found at i:15315412 original size:343 final size:341
Alignment explanation
Indices: 15314335--15318114 Score: 3309
Period size: 343 Copynumber: 11.0 Consensus size: 341
15314325 CGAGTCGTGA
* * * * *
15314335 CACTCATACCTTTGAAACCCTAGTTACTCACTTTAAGTGATTTTATAA-CTTTAAAAATGATTTT
1 CACTCATGCCTTCGAAA-GCTAGTTACTCACTTTAAATGATTTTATAATC-TTATAAATGATTTT
* * * * *
15314399 AAATT-ATTTTTTTTTTCATTTTTTGTTAGAACAAATCATAACTT-GATGTTTTGCATTGGAAAA
64 AAGTTGA-ATTTTTTTTCATTTTTGGTTAAAACAGATCATAA-TTGGATG-TTTGCATTGG-AAA
* ** * * * * * *
15314462 CGTGAAGCGAAAGTTATCAATTGACAAGAAAAGTCCATATATAATCATTCATGCCTTCAAAAGCC
125 CATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGAC
* * ** * *
15314527 TAATTACTCACTTTAAATGGTTCAATAATCTTTTAGATGATTTTAAGTTGAACCTTTTTTTTTTC
190 TAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA---TTTTTTTTTC
* * * ** * *
15314592 ATTTTTGGCTAAAAAAGATCACAATTGGATGTTAGCCTCAAGAAACATGAAGTGAGAGCCATCCA
252 ATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACATGAAGCGAAAGCCATCCA
15314657 TTGACAAGAAAAGTCCATTTATAGT
317 TTGACAAGAAAAGTCCATTTATAGT
* * * * *
15314682 TAGTAATGCCTTCGAAAGACTAGTTACTCA-TGTTAAAGGATTTTGTAATCTTATAAATGATTTT
1 CACTCATGCCTTCGAAAG-CTAGTTACTCACT-TTAAATGATTTTATAATCTTATAAATGATTTT
* * * *
15314746 AAGTTGAATTTTTTTTCATTTTTGGTTAAAACAAATCATAATTGGATGTTCGCCTGTGAAAACAT
64 AAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCAT-TGGAAACAT
* *
15314811 GAAGCGAAAGCCATCC-TTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGGAAGGCTAG
128 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAG
* * * *
15314875 TCACTCGCTTTAAATGGTTTTATAACCTTATAAATAATTTTAAGTTGAA-TTTTATTTCATTTTT
193 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTTCATTTTT
*** * ** * * * ** *
15314939 TATTAAAACATATTGTAATTGGATAATTT-CCTTAAGAAACATGAAACGAAAGCTTTCCATCGAC
258 GGCTAAAACAGATCATAATTGGAT-GTTTGCCTTGAGAAACATGAAGCGAAAGCCATCCATTGAC
*
15315003 AAGAAAAGTCCATTTATTGT
322 AAGAAAAGTCCATTTATAGT
* * * * * *
15315023 CACTTATGCCTTTGAAAGATTAGTTACTCGCTTTAAATGGTTTTATAATCCTATAAATGATTTTA
1 CACTCATGCCTTCGAAAG-CTAGTTACTCACTTTAAATGATTTTATAATCTTATAAATGATTTTA
* * *
15315088 AGTTGAATTGTTTTTCATTTTTGGTTAAAATAGATCATAATTGGATGTTTGCATTAGGAAACGTG
65 AGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCATT-GGAAACATG
* * * * * * *
15315153 AAGCGAAAGCCATCCATTGACACGAAAAGTCCATTTATTA-TCATTGATGTCTTTGAAATATTAG
129 AAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTA-TAGTCACTCATGCCTTCGAAAGACTAG
* * * * *
15315217 TTACTCGCTTTAAATGGATTTAAAATCTTATCAATGATTTTAAGTTAAATTTTTTTTTCATTTTC
193 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTTCATTTTT
* * * * * * *
15315282 AGATAAAACAGATCATAATTGGATGTTAGGCTTGAGAAACATGAAGTGAAAGCCATTCATTAACA
258 GGCTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACATGAAGCGAAAGCCATCCATTGACA
* *
15315347 AGAAAAGTCTATTTATAGC
323 AGAAAAGTCCATTTATAGT
** *
15315366 CACTCATGCCTTCGAAAGCTTAGTTACAAACTTTAAATGATTTTATAA-CTTCAAAAATGATTTT
1 CACTCATGCCTTCGAAAGC-TAGTTACTCACTTTAAATGATTTTATAATCTT-ATAAATGATTTT
* * * * * * * *
15315430 AAATTAAATTTTCTTTTTCATTTTTTGTTCAAACAGATCATAATTGGAAGTTTGGGA-GGGATAC
64 AAGTTGAA-TTT-TTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTT-GCATTGGAAAC
* ** * * * *
15315494 GTGAAGTAAAAGCCATCAATTGATAAGAAAAGTCCATTTATAGTCACTCATACCTTCGAAGGACT
126 ATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACT
* * * * *
15315559 AGTTACTCGCTTTAAATGCTTTTATAGTCTTGTAAATGATCTTAAGTTGAA-TTTTTATTCATTT
191 AGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTTCATTT
* * ** * ** * * ** * *
15315623 TTGGCTGAAACAGATCATAGTTACATGTTAGTGTCGGGAAATGTGAAGCAAAAGCCATCCATGGA
256 TTGGCTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACATGAAGCGAAAGCCATCCATTGA
* * *
15315688 CAAGAAAAGTTCATTGATAGG
321 CAAGAAAAGTCCATTTATAGT
* * ** * ** * * * *
15315709 CATTTATGCCTTTAAAAGACTGGTTACTCGTTTTACATGGTTTTATAATCTTAT-AAT-CTTATA
1 CACTCATGCCTTCGAAAG-CTAGTTACTCACTTTAAATGATTTTATAATCTTATAAATGATT-TT
* * * *
15315772 AAGGATATTGAGTTGATTTTTT--TTTTTGGCTAAAACAGATCATAATTGGATATTTGCCTTTGG
64 AA-G---TTGAATT--TTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTG-CATTGG
* * * * *
15315835 AAACATGAAACGAAAGCCATTCGTTGACAAGAAAAGTCCATTTATAG-CGACTCATGCTTTCAAA
122 AAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTC-ACTCATGCCTTCGAA
* * * * * *
15315899 AGCCTAGTTACTCACTTCAAGTGATTTTATAA-CTTGAAAAATGATTTTATA-TTGAATTTTTTT
186 AGACTAGTTACTCGCTTTAAATGGTTTTATAATCTT-ATAAATGATTTTA-AGTTGAA-TTTTTT
* * * * ** * * * **
15315962 TTTCA-TTTTAGTTCAAACAGATCATAATTGGAAGTTTGCCAAGGGAAACGTGAAGTGAAAGTTA
248 TTTCATTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACATGAAGCGAAAGCCA
15316026 TCCATTGACAAGAAAAGTCCATTTATAGT
313 TCCATTGACAAGAAAAGTCCATTTATAGT
* * * * * * **
15316055 CACTCATACCATCGAAGGACTAGTTTCTCACTTTAAATGCTTTTATAATCTTGTAAATGATCGTA
1 CACTCATGCCTTCGAAAG-CTAGTTACTCACTTTAAATGATTTTATAATCTTATAAATGATTTTA
* * * * * *
15316120 AGTTGAATTTTTTTTTTCATTTTTGGCTGAAACAGATCATAGTTGGATGTTAGCCTTACGAAACA
65 AGTTGAA--TTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCATT-GGAAACA
* * * * * * * *
15316185 TGTAGTGAAAGCCATCCATCGACAAGAAAAGTCAATTTATAGGCATTTATGCCTTCAAAAGACT-
127 TGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTA
* * * * *
15316249 GATTATTTGCTTTAAATGGTTTGATAATCTTAGAAATGATTTTGAGTTGAATTTTTTTTTCATTT
192 G-TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTTCATTT
* * * * *
15316314 TTGGGTAAAACATATCATAATTGGATGTTTGCCTATGA-AAATATGAAGTGAAAGCCATCCATGG
256 TTGGCTAAAACAGATCATAATTGGATGTTTGCCT-TGAGAAACATGAAGCGAAAGCCATCCATTG
* * *
15316378 ATAAGAAAAGTTCATTTATTGT
320 ACAAGAAAAGTCCATTTATAGT
* * * * * *
15316400 CACTCATGCCTTTGGAACGCTAGTCACTCGCTTTAAAT-AGTTTTATAACCTTATAAATAATTTT
1 CACTCATGCC-TTCGAAAGCTAGTTACTCACTTTAAATGA-TTTTATAATCTTATAAATGATTTT
* * * * ** *
15316464 AAGTTGAATTTTATTTCATTTTTTGTGAAAACAGATCAGAATTGGATAATTGCCTTGAGAAACAT
64 AAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCATTG-GAAACAT
* * * *
15316529 GAAACGAAAGCCTTCCATTGACAAGAAAAGTCCATTTATTGTCACTCATGCCTTTGAAAGACT-G
128 GAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAG
* **
15316593 ATTACTCGCTTTAAATGGTTTTATAATCCTATAAATGATTTTAAGTTGAATTAATTTTT-ATTTT
193 -TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTTCATTTT
* * * * * * *
15316657 TGGGTAAAATAGATCATAATTGGATGTTTGCATT-AGGAAACGTGAAGCAAAAGTCATCCATCGA
257 TGGCTAAAACAGATCATAATTGGATGTTTGCCTTGA-GAAACATGAAGCGAAAGCCATCCATTGA
*
15316721 CACGAAAAGTCCATTTATTA-T
321 CAAGAAAAGTCCATTTA-TAGT
* * * * * *
15316742 CACTGATGCCTTTGAAAGATTAGTTACTCACTTTAATTGGA-TTTAAAATCTTATCAATGATTTT
1 CACTCATGCCTTCGAAAG-CTAGTTACTCACTTTAAAT-GATTTTATAATCTTATAAATGATTTT
* * * *
15316806 AAGTTGAATTTGTTTTTTATTTTTGGATAAAACAGATCATCAA-TGGATGTTAGGC-TCGAGAAA
64 AAGTTGAATTT-TTTTTCATTTTTGGTTAAAACAGATCAT-AATTGGATGTT-TGCATTG-GAAA
* * * * * * *
15316869 CATGAAGTGAAAGCCATTCATTGACAAGAAAAGTCTATTTATAGCCACTCATGCTTTTGAAAGCC
125 CATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGAC
*** * * * * *
15316934 TAGTTACAAACTTTAAATGATTTTATTA-CTTCAAAAATGATTTTAAATTAAATTTTCTTTTTCA
190 TAGTTACTCGCTTTAAATGGTTTTATAATCTT-ATAAATGATTTTAAGTTGAATTTT-TTTTTCA
* * * *** * * * *
15316998 TTTTTTGTTCAAACAGATCATAATTGGATGTTTG-GGAGGGATACGTGAAGCAAAAGCCATCCAT
253 TTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACATGAAGCGAAAGCCATCCAT
* *
15317062 TGATAAGAAAAGTCCATTTATAAT
318 TGACAAGAAAAGTCCATTTATAGT
* * * * * *
15317086 CACTCATACCTTCGAAGGGCTAGTTACTCGCTTTAAATGCTTTTATAATCTTGTAAATGATCTTA
1 CACTCATGCCTTCGAA-AGCTAGTTACTCACTTTAAATGATTTTATAATCTTATAAATGATTTTA
* * * * * * * ** * **
15317151 AGTTGAATTTTTTTTCATTTTTGGCTGAAACGGATAATAGTTGCATGTTAGTGTCGCGAAATGTG
65 AGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCATTG-GAAACATG
* * * * *
15317216 AAGCGAAAGCCATCCATTGACAAGAAAAGTTCATTTATAGGCATTTATGCCTTCAAAAGACTAGT
129 AAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGT
* * * * **
15317281 TACTCGCTTTACATGGTTTTATAATCTTAT-AAT-CTTATAAAAGATATTG-AGTTGATTTT--T
194 TACTCGCTTTAAATGGTTTTATAATCTTATAAATGATT-T-TAAG---TTGAATTTTTTTTTCAT
* * * **
15317341 TTTTGGCTTAAACATATCATAATTGGATATTTGCCTTTG-GAAACATGAAGCGAAAGCCATCTGT
254 TTTTGGCTAAAACAGATCATAATTGGATGTTTGCC-TTGAGAAACATGAAGCGAAAGCCATCCAT
15317405 TGACAAGAAAAGTCCATTTATAG-
318 TGACAAGAAAAGTCCATTTATAGT
* * * * * *
15317428 CTACTTATACCTTCAAAAGCCTAGTTACTCACTTCAAGTGATTTTATAA-CTTGAAAAATGATTT
1 C-ACTCATGCCTTCGAAAG-CTAGTTACTCACTTTAAATGATTTTATAATCTT-ATAAATGATTT
* * *
15317492 TATA-TTGAATTTTTTTTTCA-TTTTGGTTCAAACAGATCATAATTGGAAGTTTGCCA-AGGAAA
63 TA-AGTTGAA-TTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTG-CATTGGAAA
* * ** * * * *
15317554 CGTGAAGTGAAAGTTATCCATTGACAAGAAAAATCCATTTATAGTCACTCATACCATCGAAGGAC
125 CATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGAC
* * * * *
15317619 TAGTTTCTCACTTTAAATGCTTTTATAATCTTGTAAATGATCTTAAGTTG-ATTTTTTTTTCATT
190 TAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTTCATT
* * ** *
15317683 TTTGGCTAAAACAGATCATAGTTGGATGTTAGCCTCAAGAAACGTGAAGCGAAAGCCATCCATTG
255 TTTGGCTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACATGAAGCGAAAGCCATCCATTG
15317748 ACAAGAAAAGTCCATTTATAG-
320 ACAAGAAAAGTCCATTTATAGT
* * * * * * * *
15317769 -------GACTTCAAAAGACT-GATTATTCGCTTTAAATGGTTTGATAATCTTAGAAATGAGTTT
1 CACTCATGCCTTCGAAAG-CTAG-TTACTCACTTTAAATGATTTTATAATCTTATAAATGATTTT
* * ** * *
15317826 GAGTTTAATTTTTTTTTCATTTTTGCATAAAACAGATCATAATTGGATATTTGCCACTGG-AACT
64 AAGTTGAA-TTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTG-CATTGGAAAC-
* * *
15317890 ATAAAGCAAAAGCCATCC-TTGGACAAGAAAAGTCCATTTTATAGGCACTCATGCCTTCGAAAGA
126 ATGAAGCGAAAGCCATCCATT-GACAAGAAAAGTCCA-TTTATAGTCACTCATGCCTTCGAAAGA
* * * *
15317954 CTAGTTACTCGCTTTAAATGGTTTTATAATCTTTTAAATAATTTTGAGTT-AA-TTTATTTTCTA
189 CTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTTC-A
* *
15318017 TTTTTGGCTAAAATAGATCATAATTGGATGTTTGCCTCGAGAAACATGAAGCGAAAGCCATCCAT
253 TTTTTGGCTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACATGAAGCGAAAGCCATCCAT
*
15318082 TGACAAGAAAAGTCTC-TTTATATT
318 TGACAAGAAAAGTC-CATTTATAGT
15318106 CACTCATGC
1 CACTCATGC
15318115 TGAAATACCC
Statistics
Matches: 2747, Mismatches: 578, Indels: 219
0.78 0.16 0.06
Matches are distributed among these distances:
332 2 0.00
333 55 0.02
334 39 0.01
335 36 0.01
336 148 0.05
337 1 0.00
339 10 0.00
340 3 0.00
341 288 0.10
342 346 0.13
343 779 0.28
344 283 0.10
345 492 0.18
346 157 0.06
347 105 0.04
348 3 0.00
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (341 bp):
CACTCATGCCTTCGAAAGCTAGTTACTCACTTTAAATGATTTTATAATCTTATAAATGATTTTAA
GTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCATTGGAAACATGAA
GCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTA
CTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTTCATTTTTGGC
TAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACATGAAGCGAAAGCCATCCATTGACAAGA
AAAGTCCATTTATAGT
Found at i:15321569 original size:10 final size:10
Alignment explanation
Indices: 15321537--15321561 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
15321527 TCTAGTTCAA
15321537 TTAAGATAAG
1 TTAAGATAAG
15321547 TTAAGATAAG
1 TTAAGATAAG
15321557 TTAAG
1 TTAAG
15321562 TTAGGTTAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.20, T:0.32
Consensus pattern (10 bp):
TTAAGATAAG
Found at i:15324093 original size:19 final size:20
Alignment explanation
Indices: 15324066--15324111 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
15324056 AGGAGACAAG
*
15324066 ATAAAATTTTTA-GAATAAA
1 ATAATATTTTTATGAATAAA
*
15324085 ATAATA-TTTTATTAATAAA
1 ATAATATTTTTATGAATAAA
15324104 ATAATATT
1 ATAATATT
15324112 AAAATATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 5 0.22
19 17 0.74
20 1 0.04
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.43
Consensus pattern (20 bp):
ATAATATTTTTATGAATAAA
Found at i:15324558 original size:20 final size:20
Alignment explanation
Indices: 15324513--15324550 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
15324503 TTTTGGCCCC
15324513 ATTTGACTTATTGGAGTATA
1 ATTTGACTTATTGGAGTATA
15324533 ATTTGACTTATTGGAGTA
1 ATTTGACTTATTGGAGTA
15324551 AGATTTGAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.29, C:0.05, G:0.21, T:0.45
Consensus pattern (20 bp):
ATTTGACTTATTGGAGTATA
Found at i:15333014 original size:13 final size:13
Alignment explanation
Indices: 15332996--15333020 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15332986 AGAGAAATTG
15332996 TGATTTTATAAAA
1 TGATTTTATAAAA
15333009 TGATTTTATAAA
1 TGATTTTATAAA
15333021 TTTTCTGGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:15339568 original size:168 final size:166
Alignment explanation
Indices: 15338880--15339934 Score: 799
Period size: 171 Copynumber: 6.3 Consensus size: 166
15338870 GGTCGTGACA
* ** *
15338880 CATGCCTTCGAAAGACTAGTTACTTGCTTTAAATGGTTTTATAATGTTGTACATGATTTTAAGTT
1 CATGCCTTCGAAAGACTAGTTACATGCTTTAAATGGTTTTATAAT-TAATAAATGATTTTAAGTT
** * * * * *
15338945 GAATTGTTTTTCACTTTT-GGTTAAAACAGATCGTAATTGGATGTTTGCCTCTAAATACATGAAA
65 GAATT-TTTTT---TTTTCCATT-AATCAGATCATAATTGGATGTTTGCCTCGAAAAACATGAAG
* *
15339009 CGAAAGCCATCCATTGACAAG-CAAGATCCATTCATAGTCACT
125 CGAAAGCCATCCATTGACAAGAAAAG-TCCATTTATAGTCACT
* * * *
15339051 CATGCCTTCGAAAGACTAGTTACATGCTTTTAATTGTTTTATAATCTTATAAATGATTTTAAGCT
1 CATGCCTTCGAAAGACTAGTTACATGCTTTAAATGGTTTTATAAT-TAATAAATGATTTTAAGTT
** * * * *
15339116 GAATTGTTTTACATTTTTGCCAAAAAT-AGATCATAA-TCGATGTTTGGCTTG-AGAA-ATGCAA
65 GAATT-TTTT---TTTTT-CCATTAATCAGATCATAATTGGATGTTTGCCTCGAAAAACATG--A
* * * * *
15339177 AGCGAAATCCATTCATTGAGAAGAAAAGTCCATTTATAGTTAGT
123 AGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACT
* * * *
15339221 AATGCCTTCGAAAGACTAGTTACTTACATTAAATGGTTTTATAATTATATAAATGATTTTAAGTT
1 CATGCCTTCGAAAGACTAGTTACATGCTTTAAATGGTTTTATAATTA-ATAAATGATTTTAAGTT
*** * * *
15339286 GAATTATTTTTTCATTTTTGGTTAAAACAGACCATAATTGGATATTTGCCTCGAAAAACATGAAG
65 GAA-T-TTTTTT--TTTTCCATT-AATCAGATCATAATTGGATGTTTGCCTCGAAAAACATGAAG
* * *
15339351 TGAAAGCCATCCATTGCCAAGAAAAGTTCATTTATAGTCACT
125 CGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACT
* * * * * * *
15339393 TATGCCTTCGAAAGCCTAGTTAC-TGACTTTAAGTGATTTCACAACTTAAAAAATGATTTTAAGT
1 CATGCCTTCGAAAGACTAGTTACATG-CTTTAAATGGTTTTATAA-TTAATAAATGATTTTAAGT
**
15339457 TGAATTTTTTTTTTTCCATTAATGCAGATCATAATTGGATGTTTGCCTCGAAAAATGTGAAGCGA
64 TGAATTTTTTTTTTTCCATTAAT-CAGATCATAATTGGATGTTTGCCTCGAAAAACATGAAGCGA
* * * *
15339522 AAGGCATCCATTAATAAGAAAAGTCCATTTATAATCACT
128 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACT
* * * * *
15339561 CATGCCTTCGAAAGGCAAGTGACTTGCTTTAAATGGTTTTGTAATCTAATAAATGATTTTAAGTT
1 CATGCCTTCGAAAGACTAGTTACATGCTTTAAATGGTTTTATAAT-TAATAAATGATTTTAAGTT
* * * * * * *
15339626 GTATTTTTTTTCATTTTTGGC-TAAAACAGAACAAAATTGGATGTTTTCCAT--AAGAAACATGA
65 G-A-ATTTTTT--TTTTT-CCATTAATCAGATCATAATTGGATGTTTGCC-TCGAA-AAACATGA
* * *
15339688 AACGAAA---A-CCA-T--C----CAA--CCATTTATAGTCAGT
123 AGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACT
* * * * *
15339719 AATGCCTTCGAAAGGCTAGTTAC-TCACTTTAAATGGTTTTATACTCTTATAAATGATTTTAAGT
1 CATGCCTTCGAAAGACTAGTTACAT-GCTTTAAATGGTTTTATAAT-TAATAAATGATTTTAAGT
*** * * * * *
15339783 TGAATTTTATTTCATTTTTGGTTAAAACATATCATAATTGGATGTTTGTCTCGAGAAACGTGAAG
64 TGAATTTT-TTT--TTTTCCATT-AATCAGATCATAATTGGATGTTTGCCTCGAAAAACATGAAG
* * * *
15339848 TGAAAGCCATCCATCGACAAGAAAAGTCCATTTACAATCACT
125 CGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACT
* * *
15339890 CATGCCTTCCAAAGACTAGTTACTTGCTTTAAGTGGTTTTATAAT
1 CATGCCTTCGAAAGACTAGTTACATGCTTTAAATGGTTTTATAAT
15339935 CTTATATGTC
Statistics
Matches: 698, Mismatches: 134, Indels: 104
0.75 0.14 0.11
Matches are distributed among these distances:
155 1 0.00
156 4 0.01
157 10 0.01
158 103 0.15
159 1 0.00
160 2 0.00
161 1 0.00
162 3 0.00
165 1 0.00
166 1 0.00
167 6 0.01
168 131 0.19
169 8 0.01
170 122 0.17
171 179 0.26
172 114 0.16
173 7 0.01
174 4 0.01
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36
Consensus pattern (166 bp):
CATGCCTTCGAAAGACTAGTTACATGCTTTAAATGGTTTTATAATTAATAAATGATTTTAAGTTG
AATTTTTTTTTTTCCATTAATCAGATCATAATTGGATGTTTGCCTCGAAAAACATGAAGCGAAAG
CCATCCATTGACAAGAAAAGTCCATTTATAGTCACT
Found at i:15339860 original size:158 final size:157
Alignment explanation
Indices: 15339546--15339829 Score: 415
Period size: 158 Copynumber: 1.8 Consensus size: 157
15339536 TAAGAAAAGT
* ** *
15339546 CCATTTATAATCACTCATGCCTTCGAAAGGCAAGTGACTTGCTTTAAATGGTTTTGTAATCTAAT
1 CCATTTATAATCACTAATGCCTTCGAAAGGCAAGTGACTCACTTTAAATGGTTTTATAATCTAAT
* *
15339611 AAATGATTTTAAGTTGTATTTTTTTTCATTTTTGGCTAAAACAGAACAAAATTGGATGTTTTCCA
66 AAATGATTTTAAGTTGAATTTTATTTCATTTTTGGCTAAAACAGAACAAAATTGGATGTTTTCCA
15339676 TAAGAAACATGAAACGAAAACCATCCAA
131 -AAGAAACATGAAACGAAAACCATCCAA
* * * * * *
15339704 CCATTTATAGTCAGTAATGCCTTCGAAAGGCTAGTTACTCACTTTAAATGGTTTTATACTCTTAT
1 CCATTTATAATCACTAATGCCTTCGAAAGGCAAGTGACTCACTTTAAATGGTTTTATAATCTAAT
* * * *
15339769 AAATGATTTTAAGTTGAATTTTATTTCATTTTTGGTTAAAACATATCATAATTGGATGTTT
66 AAATGATTTTAAGTTGAATTTTATTTCATTTTTGGCTAAAACAGAACAAAATTGGATGTTT
15339830 GTCTCGAGAA
Statistics
Matches: 110, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
158 110 1.00
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (157 bp):
CCATTTATAATCACTAATGCCTTCGAAAGGCAAGTGACTCACTTTAAATGGTTTTATAATCTAAT
AAATGATTTTAAGTTGAATTTTATTTCATTTTTGGCTAAAACAGAACAAAATTGGATGTTTTCCA
AAGAAACATGAAACGAAAACCATCCAA
Found at i:15342986 original size:171 final size:171
Alignment explanation
Indices: 15342699--15344991 Score: 2237
Period size: 171 Copynumber: 13.5 Consensus size: 171
15342689 GGGTTTTACA
* * *
15342699 TTATAAATGATTTTTAGTTG-ATTTTTTTTTATTTTTGGCTAAAACAGATCATAATTGGATGTTA
1 TTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGCTAAAACAGATCATAATTGGATGTTT
* * ** * *
15342763 GCCTCAAGCAGCGTGAAGCGAAAGCCATCCATTGACAGGAAAAGTCCATTTATAGGCACTCATGC
66 GCCTCGAGAAAAGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* **
15342828 TTTCGAAAGACTAGTTACTTGCTTTAAATGGTTTTATAATC
131 CTTCGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATC
* * * * * *
15342869 ATCTAAATGATTTTGAGTTGAATTTTTTTTTCAATTTTGGCTAAAATAGATCATAGTT-GATGTT
1 TTATAAATGATTTTAAGTTGAA-TTTTTTTTCATTTTTGGCTAAAACAGATCATAATTGGATGTT
* * ** * *
15342933 TGCCTTGGGAAAAGTGAAGCGAAA-CTCATTGATTAACAAGAAAAGTCCATTTATAGTCACTAAT
65 TGCCTCGAGAAAAGTGAAGCGAAAGC-CATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT
* * * * *
15342997 GCCTTTGAAAGGCTAGTCACTCACTTTAAATGGTTTCATAATT
129 GCCTTCGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATC
* *
15343040 TTATAAATGATTTTAAGTTGAATTGTTTTTCATTTTTAGCTAAAACAGATCATAATTGGATGTTT
1 TTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGCTAAAACAGATCATAATTGGATGTTT
** * * ** * * *
15343105 GCCTCGAGAACCGTGAAGTGAAAGCCATCCATTGATAAGAAAAGTTTATTTATAGTTAGTAATGC
66 GCCTCGAGAAAAGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* * * *
15343170 CTTTGAATGACTAATTACTCACTTTAAAGGGTTTTATAATC
131 CTTCGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATC
* * *
15343211 TTATAAATGATTTTAAGTTGAATTTTATTTT-GTTTTTGGTTAAAACATATCATAATTGGATGTT
1 TTATAAATGATTTTAAGTTGAATTTT-TTTTCATTTTTGGCTAAAACAGATCATAATTGGATGTT
* * * * *
15343275 TGTCTCGAGAAACGTGAAGTC-AAACCCATCCATTGACAAGAAAAGTCCACTTATAGTCACACAT
65 TGCCTCGAGAAAAGTGAAG-CGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT
* ** * * * *
15343339 GCCTTCAAAAGTTTAGTTGCTCACTTTAAGTGATTTTAGAA-C
129 GCCTTCGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATC
* * ** *
15343381 TTCAAAAATGATTTTGAA-TTGAA-TTTTTATCATTTTTGGCTGCAACAGGTCATAATTGGATGT
1 TT-ATAAATGATTTT-AAGTTGAATTTTTTTTCATTTTTGGCTAAAACAGATCATAATTGGATGT
* * * * *
15343444 TTGCCTCTA-AAAACGTGAAGCAAAAGCCATCTATTGATAAGAAATGTCCATTTATAGTCACTCA
64 TTGCCTCGAGAAAA-GTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCA
* * * * * *
15343508 TGCATTCGGAAGGCTAGTCACTCGCTTTAAATGGTTTTATATTC
128 TGCCTTCGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATC
* * * * *
15343552 TTATAATTGATTTTAAGTTTAATTTTTTTTCATTTTTAGTTAAAACATATCATAATTGGATGTTT
1 TTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGCTAAAACAGATCATAATTGGATGTTT
* * * * *
15343617 GCAAT-G-GAAACGTGAAGTGAAAGCCATCCATTGACAAAAAAAGTCCATTTATAATCACTCATG
66 GC-CTCGAGAAAAGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * *
15343680 CCTTCGAAGGACTAGTTACTCGCTTTAAAAGCTTTAATAATC
130 CCTTCGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATC
* * ** *
15343722 TTGTAAATGATCTTAAGTTGAATTTTTTTTCATTTTTGGCTAAAAGGGATCATAATTGGATGTTA
1 TTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGCTAAAACAGATCATAATTGGATGTTT
* * ** * *
15343787 GCCT-TAGGAAACA-TAAAGCGAAAGCCATCCATTGATGAGAAAAGTCTATTTATAGGCACTCAT
66 GCCTCGA-GAAA-AGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT
15343850 GCCTTCGAAAGACTAGTTACTCACTTTAAAT-G-------A--
129 GCCTTCGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATC
* * * * *
15343883 TT-T---TGAGTTGAA-TT--TTTTTTTTTAATTTTTGGCTAAAACATATCATAATTGGATGTTT
1 TTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGCTAAAACAGATCATAATTGGATGTTT
** * ** *
15343941 GCCTCTTGAAATGTGAAATGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTAATGC
66 GCCTCGAGAAAAGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* * * * *
15344006 CTTCGGAAGGCTAGTCACTCGCCTTAAATGGTTTTATAATC
131 CTTCGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATC
* * * * * * * * *
15344047 TTATAAATGATGTTAAATTGAAATTGTTTTCATTTTTGGATAAAATAGAACATAGTTAGATGTTT
1 TTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGCTAAAACAGATCATAATTGGATGTTT
* * * * * * *
15344112 GACTCGAGAAACA-TGAAGCAAAAACCATGCATTGACAAGAAAAGTCCATTTATAGTTAGTAATG
66 GCCTCGAGAAA-AGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
** *
15344176 GTTTCGAAAGACTAGTTACTCACGTTAAATGGTTTTATAATC
130 CCTTCGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATC
* * * ** * * **
15344218 TTATAAATGATTTTAAGTTGAATTTTATTTCATTTTTAGTTAAAACAGATTTTTATTAGATAATT
1 TTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGCTAAAACAGATCATAATTGGATGTTT
* * * * *
15344283 GCTTCGAGAAACA-TGAAACGAAAGCCTTCCATTGACAAGAAAAGACTATTTATAGTCACTCATG
66 GCCTCGAGAAA-AGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
*
15344347 CCTTCGAAAGACTAGTTACTCGCTTTAAATGGTTTTATAATC
130 CCTTCGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATC
* * * *
15344389 GTGTAAGA-GATTTTAAGTTGAATTGTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTT
1 TTATAA-ATGATTTTAAGTTGAATTTTTTTTCATTTTTGGCTAAAACAGATCATAATTGGATGTT
* * * * * *
15344453 TGCATTGGGAAACA-TGAAGCGAAAGCCATCCATTGACACGAAAAGTCCATTTATTGTCACTAAT
65 TGCCTCGAGAAA-AGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT
* * * * *
15344517 GCCTTTGAAAGATTAGTAACTCGCTTTAAATGGTTTTAAAATC
129 GCCTTCGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATC
* * * * * * * * * * * *
15344560 TTATTAATAATTATAAATTAAATTGTTTTTCATTTTTGGATAAAAGAGATTATAATTGGAAGCTA
1 TTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGCTAAAACAGATCATAATTGGATGTTT
* * * * ** * * * *
15344625 ACCTCAAGAAACGTGAAGCAAAAGATATCCATTGACAAGAAAGGTACATTTATAGCCATTCATGC
66 GCCTCGAGAAAAGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* ** *
15344690 CTTCGAAAGCCTAGTTACTCACTTTAAGCGATTTTATAA-C
131 CTTCGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATC
* * * * * * * *
15344730 TTCAAAAATGTTTTTAAATTAAATTTTTTTTCATTTTTGGTTCAAACAAATCATAATTGGAAGTT
1 TT-ATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGCTAAAACAGATCATAATTGGATGTT
* * * * *
15344795 TGCCTCAAGAAACA-TGAAGCGAAAGCCAACCATTGAAAAGAAAAGTCAATTTACAGTCACTCAT
65 TGCCTCGAGAAA-AGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT
* * *
15344859 ACCTTCGAATGACTAGTTACTCACTTTAAATGCTTTTATAATC
129 GCCTTCGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATC
* * *
15344902 TTGTAAATGATCTTAAGTTGATTTTTTTTTTCATTTTTGGCTAAAACAGATCATAATTGGATGTT
1 TTATAAATGATTTTAAGTTGA-ATTTTTTTTCATTTTTGGCTAAAACAGATCATAATTGGATGTT
** * * *
15344967 ACCCTCGGGAAATGTGAAACGAAAG
65 TGCCTCGAGAAAAGTGAAGCGAAAG
15344992 TGTCTCGACT
Statistics
Matches: 1710, Mismatches: 365, Indels: 94
0.79 0.17 0.04
Matches are distributed among these distances:
154 114 0.07
155 2 0.00
156 2 0.00
157 6 0.00
160 1 0.00
161 2 0.00
162 1 0.00
163 1 0.00
164 2 0.00
165 1 0.00
168 6 0.00
169 12 0.01
170 312 0.18
171 1149 0.67
172 99 0.06
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.37
Consensus pattern (171 bp):
TTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGCTAAAACAGATCATAATTGGATGTTT
GCCTCGAGAAAAGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
CTTCGAAAGACTAGTTACTCACTTTAAATGGTTTTATAATC
Found at i:15343964 original size:154 final size:154
Alignment explanation
Indices: 15343744--15344040 Score: 382
Period size: 154 Copynumber: 1.9 Consensus size: 154
15343734 TTAAGTTGAA
* **
15343744 TTTTTTTTCATTTTTGGCTAAAAGGGATCATAATTGGATGTTAGCCTTAGGAAACATAAAGCGAA
1 TTTTTTTTAATTTTTGGCTAAAACAGATCATAATTGGATGTTAGCCTTAGGAAACATAAAGCGAA
** * * *
15343809 AGCCATCCATTGATGAGAAAAGTCTATTTATAGGCACTCATGCCTTCGAAAGACTAGTTACTCAC
66 AGCCATCCATTGACAAGAAAAGTCCATTTATAGGCACTAATGCCTTCGAAAGACTAGTCACTCAC
*
15343874 TTTAAATGATTTTGAGTTGAATTT
131 CTTAAATGATTTTGAGTTGAATTT
* * * ** *
15343898 TTTTTTTTAATTTTTGGCTAAAACATATCATAATTGGATGTTTGCCTCT-TGAAATGTGAAA-TG
1 TTTTTTTTAATTTTTGGCTAAAACAGATCATAATTGGATGTTAGCCT-TAGGAAACAT-AAAGCG
* * *
15343961 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTAATGCCTTCGGAAGGCTAGTCACTC
64 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGGCACTAATGCCTTCGAAAGACTAGTCACTC
* *
15344026 GCCTTAAATGGTTTT
129 ACCTTAAATGATTTT
15344041 ATAATCTTAT
Statistics
Matches: 121, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
154 117 0.97
155 4 0.03
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36
Consensus pattern (154 bp):
TTTTTTTTAATTTTTGGCTAAAACAGATCATAATTGGATGTTAGCCTTAGGAAACATAAAGCGAA
AGCCATCCATTGACAAGAAAAGTCCATTTATAGGCACTAATGCCTTCGAAAGACTAGTCACTCAC
CTTAAATGATTTTGAGTTGAATTT
Found at i:15345361 original size:12 final size:12
Alignment explanation
Indices: 15345344--15345368 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
15345334 CTAATCAAAG
15345344 TAAATAAAATAT
1 TAAATAAAATAT
15345356 TAAATAAAATAT
1 TAAATAAAATAT
15345368 T
1 T
15345369 CTAGTTTCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
TAAATAAAATAT
Found at i:15351677 original size:171 final size:170
Alignment explanation
Indices: 15351024--15355096 Score: 3262
Period size: 171 Copynumber: 24.0 Consensus size: 170
15351014 GGGCTTAACA
* ** * * *
15351024 GAAAGCCA-CACATTGACAAGAGAAGTTTATTTATAGGT-GCTCATGCCTTCAAAAGACTGGTTA
1 GAAAGCCATC-CATTGACAAGAAAAGTCCATTTATA-GTCACTCATGCCTTCGAAAGACTAGTTA
* * * * * ** *
15351087 CTCGCTTTAAATAGTTTTATAATATTTTAAATGATTTTCAGTTGAA-TTTTTTT--TTTTCAGCT
64 CTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTT
* * ** *
15351149 AAAACAGATCATGATTGGATGTTAGGCTCAAGAAACATGAAGC
129 AAAACAGATCATAATTGGATGTT-TGCTTGAGAAACGTGAAGC
* * * * * * ** * *
15351192 AAAAGCCATCCATTGGCAAGATAAGTCTATTTATAATCACTAATATCTTCGAAAGGCTAGTCACT
1 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACT
* * * *
15351257 CACTTTAATTAGTTTTATAATCTT-TAAATGATTTTCAGTTG-ATTTTTTTTCATTTTTGGCTAA
66 CACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAA
** * * *
15351320 AGTAGATCATAATTGGATGTTTTCCTCGAGAAACATGAAGC
131 AACAGATCATAATTGGATG-TTTGCTTGAGAAACGTGAAGC
* * * *** * *
15351361 AAAAACCATCCATTGTCAAGAAAAGTCCATTTATAGTTTGTAATTG-CTTCGAGAGACTAGTTAC
1 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCA-TGCCTTCGAAAGACTAGTTAC
* * * * * *
15351425 TCACATTAAATGG-TTTATAATCTTATAAATGATTTTCAGTTGAATTATATTTCATATATGGTTA
65 TCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTA
* ** * *
15351489 AAACATATCATAATTGGATAATTGCTATGAGAAATGTGAAAC
130 AAACAGATCATAATTGGATGTTTGCT-TGAGAAACGTGAAGC
* * * * * *
15351531 GAAAGCCTTCCATCGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGATTGGTTATT
1 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACT
* * * * *** *
15351596 CACTTTAAATGGTTTTATAATCATGTAAATAATTTTAAGTTCAATGGGTTCTCATTTTTGGTTAA
66 CACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAA
* * *
15351661 AACAGATCATAATTGGATGTTTGCCTCAGGAAACGAGAAGC
131 AACAGATCATAATTGGATGTTTGCTTGA-GAAACGTGAAGC
* ** * * * * * *
15351702 GAAAACCATCTGTTGACACGAAAAGTCCATTTATTGTCACTGATGCCTTTGAAAGATTAGTTATT
1 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACT
** * * * *
15351767 TGCTTTAAATGGTTTTAGAATCTTATCAATGATTTTAAGTTGAATTTTTTTTCAGTTTTGGATAA
66 CACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAA
* * * *
15351832 AACATATCATAATTGGATGTTAGCCTCGAGAAATGTGAAGC
131 AACAGATCATAATTGGATGTTTG-CTTGAGAAACGTGAAGC
* * * * * *
15351873 AAAAGCCATCCATTGACAAGAAAAGTACATTTATAGCCATTCATACCTTCGAAAGCCTAGTTACT
1 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACT
* * * * * * *
15351938 CACTTTAAGTGATTTTATAA-CTTCAAAAATAATTTTAAATTGAATTTTTTTTTCAGTTTTGATT
66 CACTTTAAATGGTTTTATAATCTT-ATAAATGATTTTAAGTTGAA-TTTTTTTTCATTTTTGGTT
* * * * *
15352002 CAAACAAATCATAATTGGAAGTTTACTGTGGGAAACGTGAAGC
129 AAAACAGATCATAATTGGATGTTTGCT-TGAGAAACGTGAAGC
* * * * *
15352045 -AAAACCATTCATTGACAAGAAAAGTCCATTTATAATCACTCATGCCTTCGAAGGACTAGCTACT
1 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACT
* * * *
15352109 CATTTTAAATGCTTTTATAATCTTATAAATGA-TTTGAGTTG-A-TTTTTTTCATTTTTGGATAA
66 CACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAA
* * *
15352171 AACAGTTCATAATTGGATGTTATCCTTGGGAAACGTGAAGC
131 AACAGATCATAATTGGATGTT-TGCTTGAGAAACGTGAAGC
* ** * * * * *
15352212 GAAAG-AATCCATTGACAAGAAAAGTATATTTATAGCCATTCATACCTTCGAAGGACTAGTTATT
1 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACT
* * ** * * ** * * *
15352276 CGCTTTAAATGCTTTTATTTTCTTGTGAACAATCTTAAGTTGAATTTCTTTTCATTTTT-GCTAA
66 CACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAA
* * * * **
15352340 AATAGATCATAATTGGATATTGGCCTTGGGAAAAATGAAGC
131 AACAGATCATAATTGGATGTTTG-CTTGAGAAACGTGAAGC
* * * * *
15352381 GAAAGCCATCCATTCACAAAAAAAGTTCATTTATAGGCACTCATGCCTTCGAAGGACTAGTTACT
1 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACT
* * * **
15352446 CGCTTTAAATGGTTTAATAAT-TTGATAAATGATTTTAAGTTGAATTTTCTTTCATTTTTGACTA
66 CACTTTAAATGGTTTTATAATCTT-ATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTA
* * * * *
15352510 AAAAATATCATAATTGGATGTTTTCCTT-AGGAAACGTGACGT
130 AAACAGATCATAATTGGATG-TTTGCTTGA-GAAACGTGAAGC
* * * *
15352552 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTGATGCCTTTGAAAGGCTAGTCACT
1 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACT
* *
15352617 CGCTTTAAATGGTTTTATAATCTTTTAAATGATTTTAAGTTGAATTTTTTTTTTTTTACATTTTT
66 CACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA-----TTTTTTTT-CATTTTT
* * * * * *
15352682 AGCTAAAACA-AGTCATACTT-GATGTTTGGCTTGGGAAATGTGAAGT
125 GGTTAAAACAGA-TCATAATTGGATGTTT-GCTTGAGAAACGTGAAGC
* * * * * * * *
15352728 GAAATCCATCCATTGAGAAGAAAAGTCTATTTATAGTCAGTAATGCTTTCAAAAGACTAATTACT
1 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACT
* * * * * *
15352793 CACGTTAAATGATTTTATAATTTTATAAATAACTTTAAGTTGAATTGTTTTTCATTTTTGGTTAA
66 CACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAA
* * * *
15352858 AACATATCAAAATTGGATGTTTGGCTTGAGAAACATGAAGT
131 AACAGATCATAATTGGATGTTT-GCTTGAGAAACGTGAAGC
* * * *
15352899 GAAAGCCATCCATTGACAA-AAAAGGTCCATTTATAATCACTTATACCTTCGAAAGCCTAGTTAC
1 GAAAGCCATCCATTGACAAGAAAA-GTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTAC
** * * * * *
15352963 TCGTTTTAAGTGATTTCAT-AGCTTCAAAAATGATTTTAAGTT-AATTTTTTCTT-ATTTTTGGT
65 TCACTTTAAATGGTTTTATAATCTT-ATAAATGATTTTAAGTTGAATTTTTT-TTCATTTTTGGT
* **
15353025 TAATACAGATCATAATTGGATGTTTGCCTT-AGGAAACAAGAAGC
128 TAAAACAGATCATAATTGGATGTTTG-CTTGA-GAAACGTGAAGC
* * * * * * *
15353069 GAAAAGCCATCAATTGATAAGGAAAGTCCATTTATAGTCACTCATGCCTACGAAAGGCTAATGAC
1 G-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTAC
* *** * * ** *
15353134 TCACTTTGAACAATTTTATAACCTTATCAATGATTTTAAGTTGAATTTTTTTT-ATTTTCAGCTA
65 TCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTA
* * * * ** ** * *
15353198 AAACAAAACAAAATTTGATGTTCACCTCAAGAAATGTGAAGA
130 AAACAGATCATAATTGGATGTT-TGCTTGAGAAACGTGAAGC
* * * * *
15353240 AAAAACCATCCA---AC------A----ATTTATAGTCAGTAATGACTTCGAAAGACTAGTTACT
1 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACT
* * * * * *
15353292 CACGTTAAATGGTTTTATAATCTTATAAATAATTATAAGTTGAAGTTTATTTCATTTTTAGTTAA
66 CACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAA
* *
15353357 AACAGATCATAATTGGATGTTTGCCTCT-AGAAAAGTGACGC
131 AACAGATCATAATTGGATGTTTG-CT-TGAGAAACGTGAAGC
* * * * *
15353398 AAAAGGCATCCATCGACAAGAAAAGTCCGTTTATAGTCACTCATGCCTTCGAAAAACTAGTTACT
1 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACT
* * * * ** * * *
15353463 CGCTTTAAATGGTTTTATAATCATCTAAATGATTTCAAGTTGTGTGGTTTTTT-ATTTTTGTTTT
66 CACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAAT-TTTTTTTCATTTTTGGTTA
* * * *
15353527 AAACAAATCATAATTGGATGTTTGAATTGGGAAACATGAAGC
130 AAACAGATCATAATTGGATGTTTG-CTTGAGAAACGTGAAGC
* * * * *
15353569 GAAAGCCATCCACTGACACGAAAAGTCCATTTATTGTCACTGATGCCTTTC-AAAGATTAGTTAC
1 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC-TTCGAAAGACTAGTTAC
** * * * * * *
15353633 TCGTTTTAAATGTTTTTTTAATTTTGTAAATGATCTTAAGTTGATTTTTGTTTTCATTTTTGGTT
65 TCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTT-TTTTCATTTTTGGTT
* ** * * *
15353698 AAAACAGATCATAATTGGATGTTTACCTCAACAAATGTGAAGT
129 AAAACAGATCATAATTGGATGTTT-GCTTGAGAAACGTGAAGC
* * * * **
15353741 TAATGCCATCCATTTG-CAAGCAAAGTCCATTTATAGTCACTCATGCCTTTGAAACCCTAGTTAC
1 GAAAGCCATCCA-TTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTAC
* * * * *
15353805 TCACTTTAAATGATTTTATGA-CTTTAAAAATGATTTTAAATTGAATTTTTTTTCATTTTTTGTT
65 TCACTTTAAATGGTTTTATAATC-TTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTT
* * *
15353869 AGAACAAATCATAACTT-GATGTTTTGCATTG-GAAAATGTGAAGC
129 AAAACAGATCATAA-TTGGATG-TTTGC-TTGAG-AAACGTGAAGC
* * * * * * * *
15353913 AAAAGCTATCAATTAACAAGAAAAGTCCATTTATAATCATTCATGCCTTCGAAAGCCTAATTACT
1 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACT
** * * * *
15353978 CACTTTAAATGGTTCAATAATCTTTTAGATGATTTTAAGTTGAACCTTGTTTTTTTATTTTTGGC
66 CACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA--TT-TTTTTTCATTTTTGGT
* * ** * * *
15354043 TAAAAAAGATCATAATTAGATGTCAG-TCTCAGGAAACATGAAGT
128 TAAAACAGATCATAATTGGATGTTTGCT-TGA-GAAACGTGAAGC
* * * * *
15354087 GAAAGCCATCCATTGACAAG-AAAGTTCCATTTATAATTACTTATGCTTTCGAAAGCCTAGTTAC
1 GAAAGCCATCCATTGACAAGAAAAG-TCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTAC
* * * * * * *
15354151 CCGCTTTAAGTGATTTCACAA-CTTCAAAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTT
65 TCACTTTAAATGGTTTTATAATCTT-ATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTT
* * * * **
15354215 AATATAGATCGTAATTGGATGTTTGCCTTGGGAAACAAGAAGC
129 AAAACAGATCATAATTGGATGTTTG-CTTGAGAAACGTGAAGC
* * * * * * * ***
15354258 GAAAGCCATCAATTGATAAGGAAAGTCCATTCATAGTCACTCATGCCTACGGAAGGCTAAAGACT
1 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACT
* * * * * *
15354323 CACTTTGAATAGTTTTATAACCTTATCAATGATTTTAAGTTG-ATTTTTTTTTATTTTTGGCTAA
66 CACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAA
* * * ** * *
15354387 AACAGAACAAAATTTGATGTTCACCTCGAGAAACATGAAGC
131 AACAGATCATAATTGGATGTT-TGCTTGAGAAACGTGAAGC
* * * * * *
15354428 -AAA---AACC-TT--C----CAA--CAATTTATAGTCAGTAATGACTTCGAAAGACTAGTTACT
1 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACT
* * * *
15354480 CACGTTAAATGGTTTTATAATCTTTTAAATGATTCTAAGTTGAATTTTATTTCATTTTTGGTTAA
66 CACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAA
* ** *
15354545 AACATATCATAATTGGATGTTTGCCTCAAGAAACATGAAGC
131 AACAGATCATAATTGGATGTTTG-CTTGAGAAACGTGAAGC
* * * * * *
15354586 AAAAGGCATCCATCGACAACAAAATTCTATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACT
1 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACT
* * * * * ** * *
15354651 CACTTTAAATGATTTTATAATCATCTAAATGATTTCAAGTTGTATGGTTTTTCATTTTTGTTTTA
66 CACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAA
* * * *
15354716 AACAAATCATAATTGGATGTTTGAATTGGGAAACATGAAGC
131 AACAGATCATAATTGGATGTTTG-CTTGAGAAACGTGAAGC
* * * * * *
15354757 GAAAGCCATCCACTGACACG-AAAGTCCATTTATTGTCACTAATGCCTTTGAAAGATTAGTTACT
1 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACT
* * * * * * *
15354821 CGCTTTAAATGCTTTTTTAATTTTGTAAATGATCTTAAGTTGATTTTTGTTTTCATTTTTGGTTA
66 CACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTT-TTTTCATTTTTGGTTA
* * *
15354886 AAACAGATCATAATTGGATGTTTGCCTCGACAAACGTGAAGT
130 AAACAGATCATAATTGGATGTTTG-CTTGAGAAACGTGAAGC
* ** * * * * *
15354928 GAATGCCATCCATTTCCAAGAAAAGTCTATTTATAGTCACTTATGCCTTTGAATGCCTAGTTACT
1 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACT
* * * *
15354993 CGCTTT--ATGTGATTTATAA-CTT-TAAAGATGGTTTTAAGTAGAATTTTTTTTCATCTTTT-G
66 CACTTTAAATG-GTTTTATAATCTTAT-AA-ATGATTTTAAGTTGAATTTTTTTTCAT-TTTTGG
* * * * *
15355053 TTAAAACATATTATAATTTGATGTTTTGCATTGAAAAACATGAA
127 TTAAAACAGATCATAATTGGATG-TTTGC-TTGAGAAACGTGAA
15355097 ACAAAATGTA
Statistics
Matches: 3098, Mismatches: 687, Indels: 237
0.77 0.17 0.06
Matches are distributed among these distances:
157 134 0.04
158 101 0.03
159 5 0.00
161 3 0.00
162 3 0.00
163 1 0.00
165 3 0.00
166 3 0.00
167 149 0.05
168 93 0.03
169 179 0.06
170 476 0.15
171 1309 0.42
172 362 0.12
173 12 0.00
174 95 0.03
175 33 0.01
176 116 0.04
177 21 0.01
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.37
Consensus pattern (170 bp):
GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACT
CACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAA
AACAGATCATAATTGGATGTTTGCTTGAGAAACGTGAAGC
Found at i:15356735 original size:54 final size:54
Alignment explanation
Indices: 15356577--15356735 Score: 264
Period size: 54 Copynumber: 2.9 Consensus size: 54
15356567 ATGGTGATAC
*
15356577 TGTCCGGCTATGTGCACGATGTGGTGGGATGCACATGAGCTAGGTGAGATAGGA
1 TGTCCGGCTATGTGCACGATGTGGTGGGATGCACATGAGCTAGGTGAGATGGGA
*
15356631 TGTCCGGCTATGTGCACAATGTGGTGGGATGCACATGAGCTAGGTGAGATGGGA
1 TGTCCGGCTATGTGCACGATGTGGTGGGATGCACATGAGCTAGGTGAGATGGGA
* * * *
15356685 TGTCTGGCTATGTGCATGATGTGGTGGGATGCACATGGGCTGGGTGAGATG
1 TGTCCGGCTATGTGCACGATGTGGTGGGATGCACATGAGCTAGGTGAGATG
15356736 CACATGATGA
Statistics
Matches: 98, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 98 1.00
ACGTcount: A:0.20, C:0.14, G:0.40, T:0.26
Consensus pattern (54 bp):
TGTCCGGCTATGTGCACGATGTGGTGGGATGCACATGAGCTAGGTGAGATGGGA
Found at i:15361068 original size:15 final size:15
Alignment explanation
Indices: 15361032--15361061 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
15361022 GACAATTCAA
*
15361032 TTGGTATAAAAGCTT
1 TTGGTTTAAAAGCTT
15361047 TTGGTTTAAAAGCTT
1 TTGGTTTAAAAGCTT
15361062 ATTGTTTTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.43
Consensus pattern (15 bp):
TTGGTTTAAAAGCTT
Found at i:15370202 original size:2 final size:2
Alignment explanation
Indices: 15370195--15370228 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
15370185 TGTTATGTTG
* *
15370195 AT AT AT AT AT AT AT AT AT AT AT CT AA AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15370229 GGTATGTATT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:15371916 original size:171 final size:171
Alignment explanation
Indices: 15371607--15372445 Score: 925
Period size: 171 Copynumber: 4.9 Consensus size: 171
15371597 TCGTGACACA
* * * * **
15371607 AAAGCCTTCCATCGAAAAGAAAAGTCCATTTATAGTCACTCACGCCTTTGAAAGGTTAGTTACTC
1 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGACTAGTTACTC
* * *
15371672 GCTTTAAATGGTTTTATATTCATGTAAATGATTTTAAGTTTAATTGTTTTTCATTTTTGCTTAAA
66 GCTTTAAATGGTTTTATAATCTTGTAAATGATTTTAAGTTTAATTGTTTTTCATTTTTGGTTAAA
* * **
15371737 ACAGATCATAATTGAATGTTTGCCTCAAGAAACGTGAAGCG
131 ACAGATCATAATTGGATGTTTGCATTGAGAAACGTGAAGCG
* * * * *
15371778 AATGCCATCCATTGACAAGAAAAGTCCATTTGTAGTCACTCATGTCTTTGAAGGACTAGTTACGC
1 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGACTAGTTACTC
* * * *
15371843 GCTTTAAATGGTTTTATAATCTTGTAAATGATATTAAGTTCAATTATTTTTCGTTTTTGGTTAAA
66 GCTTTAAATGGTTTTATAATCTTGTAAATGATTTTAAGTTTAATTGTTTTTCATTTTTGGTTAAA
* *
15371908 ATAGATCATAATTGGATGTTTGCATTGGGAAACGTGAAGCG
131 ACAGATCATAATTGGATGTTTGCATTGAGAAACGTGAAGCG
* * * * * *
15371949 AAAGCCATCTATTGACATGAAAAGTTCATTTATTGTCAATGATGCCTTTGAAAGACTAGTTACTC
1 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGACTAGTTACTC
* * * * * * * *
15372014 ACCTTAAATGGTTTTACAATCTTATCAATGATTTTAAGTTTAGTTTTTTTTTTTCATTTTTAGTT
66 GCTTTAAATGGTTTTATAATCTTGTAAATGATTTTAAGTTTA---ATTGTTTTTCATTTTTGGTT
* * * * * *
15372079 AAAACATATCATAATTGGATGTTTGCCTTGACAAATGCGAAGTG
128 AAAACAGATCATAATTGGATGTTTGCATTGAGAAACGTGAAGCG
* * * * * * *
15372123 AATGCCATCCATTTG-CAAGCAAAGTCCATTTATGGTCACTTATGCCTTTGAATGCCTAGTTATT
1 AAAGCCATCCA-TTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGACTAGTTACT
* * * * * * *
15372187 CGCTTTAAATGATTTTAT-AGCTT-TAAAGATGAATTTAAGTTTGATTTTTTTTTATTTTTTTGT
65 CGCTTTAAATGGTTTTATAATCTTGT-AA-ATGATTTTAAGTTTAATTGTTTTTCA-TTTTTGGT
* * *
15372250 TAAAACAGATCATAATTTGATGTTTTGCATTG-GAAAACATGAATCG
127 TAAAACAGATCATAATTGGATG-TTTGCATTGAG-AAACGTGAAGCG
* * * * *
15372296 AAAGCCTTCCATCG-CTAAGAAAAGTCCATTTATAGTCGCTCATGCCTTCGAAAGATTAGTTACT
1 AAAGCCATCCATTGAC-AAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGACTAGTTACT
* *
15372360 CGCTTTAAATGGTTTTATATTCGTGTAAATGATTTTAAGTTTAATTGTTTTTCA-TTTTGGTTAA
65 CGCTTTAAATGGTTTTATAATCTTGTAAATGATTTTAAGTTTAATTGTTTTTCATTTTTGGTTAA
*
15372424 AACATATCATAATTGGATGTTT
130 AACAGATCATAATTGGATGTTT
15372446 TATTGGTCCC
Statistics
Matches: 548, Mismatches: 108, Indels: 25
0.80 0.16 0.04
Matches are distributed among these distances:
170 3 0.01
171 271 0.49
172 31 0.06
173 107 0.20
174 132 0.24
175 4 0.01
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.40
Consensus pattern (171 bp):
AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGACTAGTTACTC
GCTTTAAATGGTTTTATAATCTTGTAAATGATTTTAAGTTTAATTGTTTTTCATTTTTGGTTAAA
ACAGATCATAATTGGATGTTTGCATTGAGAAACGTGAAGCG
Found at i:15373292 original size:74 final size:74
Alignment explanation
Indices: 15373204--15373399 Score: 259
Period size: 74 Copynumber: 2.6 Consensus size: 74
15373194 GATAGAGTGG
** * *
15373204 TCTTAGTTGACTAACTATGCTTTTTAGTCAATTAAGTTTTCTCTGTCTTG-AATTTGAAATTTCT
1 TCTTAGTTGACTAACCGTGCTTCTTAGTCGATTAAGTTTTCTCTGTCTTGTAA-TTGAAATTTCT
*
15373268 AGCTGTGAGC
65 AGCAGTGAGC
* * * * *
15373278 TCTTAGTTGACTAACCGTGCTTCTTAGTCGATTAAGTTCTCTCTATCTTGTAATTGAGATTTTTG
1 TCTTAGTTGACTAACCGTGCTTCTTAGTCGATTAAGTTTTCTCTGTCTTGTAATTGAAATTTCTA
15373343 GCAGTGAGC
66 GCAGTGAGC
* * *
15373352 TCTTAGTTGACTAACCGTGCTTCTTAGTCGACTAAGTCTTCTTTGTCT
1 TCTTAGTTGACTAACCGTGCTTCTTAGTCGATTAAGTTTTCTCTGTCT
15373400 CACAATCTTC
Statistics
Matches: 106, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
74 104 0.98
75 2 0.02
ACGTcount: A:0.20, C:0.18, G:0.18, T:0.44
Consensus pattern (74 bp):
TCTTAGTTGACTAACCGTGCTTCTTAGTCGATTAAGTTTTCTCTGTCTTGTAATTGAAATTTCTA
GCAGTGAGC
Done.