Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39371879
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2227820 characters in sequence are not A, C, G, or T
File 42 of 103
Found at i:15753817 original size:43 final size:41
Alignment explanation
Indices: 15753730--15753858 Score: 159
Period size: 43 Copynumber: 3.0 Consensus size: 41
15753720 TTGTGTGATA
* *
15753730 ATGATGACCTAGCTATGTGCGTGTGGGAGTGCACATGAGTTG
1 ATGATGACC-AGCTATGTGCGTGTAGGAGTGCACATGAGCTG
15753772 ATGATGACACAGCTATGTGCGGTGTAGGAGTGCACATGAGCTG
1 ATGATGAC-CAGCTATGTGC-GTGTAGGAGTGCACATGAGCTG
* * * *
15753815 ATGATGACCCGACCATGTACGAGTAGGGAGTGCACATGAGCTG
1 ATGATGACCAG-CTATGTGCGTGTA-GGAGTGCACATGAGCTG
15753858 A
1 A
15753859 GTATGGAGGG
Statistics
Matches: 77, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
42 24 0.31
43 53 0.69
ACGTcount: A:0.26, C:0.17, G:0.34, T:0.23
Consensus pattern (41 bp):
ATGATGACCAGCTATGTGCGTGTAGGAGTGCACATGAGCTG
Found at i:15761195 original size:43 final size:42
Alignment explanation
Indices: 15761108--15761235 Score: 177
Period size: 42 Copynumber: 3.0 Consensus size: 42
15761098 TTGTGTGATA
*
15761108 ATGATGACCCAGCTATGTGCGTGTGGGAGTGCACATGAGCTG
1 ATGATGACCCAGCTATGTGCGTGTAGGAGTGCACATGAGCTG
*
15761150 ATGATGACCCAGCTATGTGCTGTGTAGGAGTGCACATGAGTTG
1 ATGATGACCCAGCTATGTGC-GTGTAGGAGTGCACATGAGCTG
* * * *
15761193 ATGATGA-CTAACCATGTGCGAGTAGGGAGTGCACATGAGCTG
1 ATGATGACCCAGCTATGTGCGTGTA-GGAGTGCACATGAGCTG
15761235 A
1 A
15761236 GTGTGGAGGA
Statistics
Matches: 77, Mismatches: 7, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
41 4 0.05
42 46 0.60
43 27 0.35
ACGTcount: A:0.25, C:0.17, G:0.34, T:0.24
Consensus pattern (42 bp):
ATGATGACCCAGCTATGTGCGTGTAGGAGTGCACATGAGCTG
Found at i:15765788 original size:49 final size:49
Alignment explanation
Indices: 15765729--15765844 Score: 151
Period size: 49 Copynumber: 2.3 Consensus size: 49
15765719 GTGATAATAT
* ** * *
15765729 TGACCTGGCTATGTGTGAGTAGGGAGTGCGCATAAGCCGATGATGATGA
1 TGACCCGGCTATGTGCAAGTAGAGAGTGCGCATAAGCCGATGATGACGA
* *
15765778 TGACCCGGCTATGTACAAGTAGAGAGTGCGCATAAGCCGATGATGCCGA
1 TGACCCGGCTATGTGCAAGTAGAGAGTGCGCATAAGCCGATGATGACGA
*
15765827 TGACTCCGACTATGTGCA
1 TGAC-CCGGCTATGTGCA
15765845 GGATGTGTGG
Statistics
Matches: 57, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
49 46 0.81
50 11 0.19
ACGTcount: A:0.26, C:0.20, G:0.32, T:0.22
Consensus pattern (49 bp):
TGACCCGGCTATGTGCAAGTAGAGAGTGCGCATAAGCCGATGATGACGA
Found at i:15770960 original size:49 final size:49
Alignment explanation
Indices: 15770877--15771038 Score: 191
Period size: 49 Copynumber: 3.3 Consensus size: 49
15770867 GTGATAATAT
* ** * *
15770877 TGACCCGGCTATGCGCGAGTAGAGAGTGCTCATAAGCCGATGATGATGA
1 TGACCTGGCTATGTACGAGTAGGGAGTGCGCATAAGCCGATGATGATGA
* * *
15770926 TGACCTGGCTATGTATGAGTAGGGATTGCGCATAAGTCGATGATGATGA
1 TGACCTGGCTATGTACGAGTAGGGAGTGCGCATAAGCCGATGATGATGA
* **
15770975 TGA-CTCGGCTATGTGCGAGTAGGGAGTGCGCATAAGCCGATGATGCCGA
1 TGACCT-GGCTATGTACGAGTAGGGAGTGCGCATAAGCCGATGATGATGA
*
15771024 TGACTCCGGCTATGT
1 TGAC-CTGGCTATGT
15771039 GCACGATGTG
Statistics
Matches: 95, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
48 2 0.02
49 84 0.88
50 8 0.08
51 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.33, T:0.24
Consensus pattern (49 bp):
TGACCTGGCTATGTACGAGTAGGGAGTGCGCATAAGCCGATGATGATGA
Found at i:15772179 original size:19 final size:19
Alignment explanation
Indices: 15772155--15772192 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
15772145 CCATTTGACT
*
15772155 TATTGGAGTATGATTTGAG
1 TATTGGAGTATAATTTGAG
15772174 TATTGGAGTATAATTTGAG
1 TATTGGAGTATAATTTGAG
15772193 GGTTTGGCAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.42
Consensus pattern (19 bp):
TATTGGAGTATAATTTGAG
Found at i:15778873 original size:17 final size:17
Alignment explanation
Indices: 15778843--15778875 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
15778833 TTCTTGATAA
15778843 AATAAAACTCCTTATTG
1 AATAAAACTCCTTATTG
15778860 AATAATAACT-CTTATT
1 AATAA-AACTCCTTATT
15778876 TATTATTATC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.39
Consensus pattern (17 bp):
AATAAAACTCCTTATTG
Found at i:15779080 original size:28 final size:29
Alignment explanation
Indices: 15779039--15779103 Score: 89
Period size: 28 Copynumber: 2.3 Consensus size: 29
15779029 TAAGACAAAA
* *
15779039 AAATAT-TTTATCTTGTCTAAATTGAGAC
1 AAATATGTTTATCTTATCTAAATTAAGAC
15779067 AAATATGTTT-TCTTATCTAAATTAAGAC
1 AAATATGTTTATCTTATCTAAATTAAGAC
*
15779095 AAAAATGTT
1 AAATATGTT
15779104 AAAGCTGCCA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
28 30 0.91
29 3 0.09
ACGTcount: A:0.40, C:0.09, G:0.09, T:0.42
Consensus pattern (29 bp):
AAATATGTTTATCTTATCTAAATTAAGAC
Found at i:15788511 original size:5 final size:5
Alignment explanation
Indices: 15788503--15788537 Score: 61
Period size: 5 Copynumber: 7.0 Consensus size: 5
15788493 CAATCGAACC
*
15788503 TAACT TAACT TAACT TAACT TATCT TAACT TAACT
1 TAACT TAACT TAACT TAACT TAACT TAACT TAACT
15788538 GGACTTGGGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.37, C:0.20, G:0.00, T:0.43
Consensus pattern (5 bp):
TAACT
Found at i:15791228 original size:27 final size:28
Alignment explanation
Indices: 15791171--15791228 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
15791161 GGAAAAATGT
*
15791171 CCTGGTGGTGGAAAATTACAATTTTGCC
1 CCTGGTGGTGGAAAATTACAATTTTGAC
*
15791199 CCTGG-GGTGGCAAAATTACCATTTT-AC
1 CCTGGTGGTGG-AAAATTACAATTTTGAC
15791226 CCT
1 CCT
15791229 TTTACTCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
27 9 0.33
28 18 0.67
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.31
Consensus pattern (28 bp):
CCTGGTGGTGGAAAATTACAATTTTGAC
Found at i:15791763 original size:19 final size:19
Alignment explanation
Indices: 15791724--15791769 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
15791714 TTAATATTTT
*
15791724 AATATTATTTTATTTGTAA
1 AATATTATTTTATTTGAAA
15791743 AATATTATTTTATTCT-AAA
1 AATATTATTTTATT-TGAAA
*
15791762 AATTTTAT
1 AATATTAT
15791770 CTTGTCTCCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 23 0.96
20 1 0.04
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (19 bp):
AATATTATTTTATTTGAAA
Found at i:15795736 original size:14 final size:14
Alignment explanation
Indices: 15795706--15795745 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
15795696 CTTGGAAGCA
*
15795706 AAAAGAAAAAGGAAG
1 AAAAGAGAAA-GAAG
15795721 AAAAGAGAAAGAAG
1 AAAAGAGAAAGAAG
*
15795735 AAAATAGAAAG
1 AAAAGAGAAAG
15795746 GAGAGGGAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 14 0.61
15 9 0.39
ACGTcount: A:0.72, C:0.00, G:0.25, T:0.03
Consensus pattern (14 bp):
AAAAGAGAAAGAAG
Found at i:15795743 original size:21 final size:21
Alignment explanation
Indices: 15795718--15795767 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
15795708 AAGAAAAAGG
15795718 AAGAAAAGAGAAAGAAGAAA-
1 AAGAAAAGAGAAAGAAGAAAT
* **
15795738 ATAGAAAGGAGAGGGAAGAAAT
1 A-AGAAAAGAGAAAGAAGAAAT
15795760 AAGAAAAG
1 AAGAAAAG
15795768 CAAAAAGGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
20 1 0.04
21 22 0.92
22 1 0.04
ACGTcount: A:0.66, C:0.00, G:0.30, T:0.04
Consensus pattern (21 bp):
AAGAAAAGAGAAAGAAGAAAT
Found at i:15798568 original size:15 final size:16
Alignment explanation
Indices: 15798548--15798577 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
15798538 GCTGGTGGAC
15798548 CTACTTTAAA-GAGCA
1 CTACTTTAAATGAGCA
15798563 CTACTTTAAATGAGC
1 CTACTTTAAATGAGC
15798578 TACCTACAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.37, C:0.20, G:0.13, T:0.30
Consensus pattern (16 bp):
CTACTTTAAATGAGCA
Found at i:15806668 original size:18 final size:19
Alignment explanation
Indices: 15806642--15806689 Score: 62
Period size: 18 Copynumber: 2.6 Consensus size: 19
15806632 GTGATGGGTG
*
15806642 AAAAGAATATTTTA-AAAT
1 AAAATAATATTTTATAAAT
* *
15806660 AAAATAATATTTTATTACT
1 AAAATAATATTTTATAAAT
15806679 AAAATAATATT
1 AAAATAATATT
15806690 AAAATATTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 13 0.50
19 13 0.50
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (19 bp):
AAAATAATATTTTATAAAT
Found at i:15807641 original size:14 final size:14
Alignment explanation
Indices: 15807597--15807641 Score: 63
Period size: 14 Copynumber: 3.1 Consensus size: 14
15807587 CTTGGAAGCA
*
15807597 AAAAGAGAAAGGAA
1 AAAAGAGAAAGGAG
*
15807611 AAAAGGAGAAAGAAG
1 AAAA-GAGAAAGGAG
15807626 AAAAGAGAAAGGAG
1 AAAAGAGAAAGGAG
15807640 AA
1 AA
15807642 GGAAGAAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
14 15 0.56
15 12 0.44
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (14 bp):
AAAAGAGAAAGGAG
Found at i:15808262 original size:19 final size:19
Alignment explanation
Indices: 15808222--15808262 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
15808212 TAAGTATATT
* *
15808222 GAGTTTAAATTGTTGCTAA
1 GAGTTTAAATTGTTCCGAA
*
15808241 GAGTTTAAATTGTTCCGGA
1 GAGTTTAAATTGTTCCGAA
15808260 GAG
1 GAG
15808263 GATAACGGGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.29, C:0.07, G:0.27, T:0.37
Consensus pattern (19 bp):
GAGTTTAAATTGTTCCGAA
Found at i:15809499 original size:72 final size:73
Alignment explanation
Indices: 15809395--15809584 Score: 219
Period size: 72 Copynumber: 2.6 Consensus size: 73
15809385 CAATTCAAAA
* *
15809395 ACAGAACCAACTTAATCGACTGAGAGATATTGTTAGTTGACTAAGTGCTTAC-ACCTAAAAGCT-
1 ACAGAACCAACTTAATTGACTAAGAGA-ATTGTTAGTTGACTAAGTGCTTACTACCTAAAA-CTA
*
15809458 GAGTTCAGAA-
64 G-GATCAGAAG
** * *
15809468 ACA-AACTGACTTAATTGACTAAGAGGAATTGTTAGTTGACTAAGTGCTTTCTACCTGAAACTAG
1 ACAGAACCAACTTAATTGACTAAGA-GAATTGTTAGTTGACTAAGTGCTTACTACCTAAAACTAG
15809532 GATCAGAAG
65 GATCAGAAG
* *
15809541 ACAGAACCAACTTAATTGACTAAGA-AGTATGTTAGTCGACTAAG
1 ACAGAACCAACTTAATTGACTAAGAGAAT-TGTTAGTTGACTAAG
15809585 AGCTCTCTAT
Statistics
Matches: 100, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
72 51 0.51
73 30 0.30
74 19 0.19
ACGTcount: A:0.37, C:0.16, G:0.19, T:0.27
Consensus pattern (73 bp):
ACAGAACCAACTTAATTGACTAAGAGAATTGTTAGTTGACTAAGTGCTTACTACCTAAAACTAGG
ATCAGAAG
Found at i:15812356 original size:43 final size:43
Alignment explanation
Indices: 15812293--15812402 Score: 134
Period size: 43 Copynumber: 2.6 Consensus size: 43
15812283 TATTGACTAG
* *
15812293 GCTATGTGCGAGTAGGGAGTGCGCATAAGCCGAG-GATGACCC-
1 GCTATGTGCGAGTAAGGAGTGCGCATAACCCG-GTGATGACCCA
* * *
15812335 GATTATGTGCAAGTAAGGAGTGCACATAACCCGGTGATGACCCA
1 G-CTATGTGCGAGTAAGGAGTGCGCATAACCCGGTGATGACCCA
*
15812379 GCCATGTGCGAGTAAGGAGTGCGC
1 GCTATGTGCGAGTAAGGAGTGCGC
15812403 TTGAGCTGGT
Statistics
Matches: 56, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
42 2 0.04
43 53 0.95
44 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.35, T:0.18
Consensus pattern (43 bp):
GCTATGTGCGAGTAAGGAGTGCGCATAACCCGGTGATGACCCA
Found at i:15812414 original size:43 final size:43
Alignment explanation
Indices: 15812296--15812417 Score: 131
Period size: 43 Copynumber: 2.8 Consensus size: 43
15812286 TGACTAGGCT
* **
15812296 ATGTGCGAGTAGGGAGTGCGCATAAGCCGAG-GATGACCCGATT
1 ATGTGCGAGTAAGGAGTGCGCATAAGCCG-GTGATGACCCGACC
* * *
15812339 ATGTGCAAGTAAGGAGTGCACATAACCCGGTGATGACCC-AGCC
1 ATGTGCGAGTAAGGAGTGCGCATAAGCCGGTGATGACCCGA-CC
* * *
15812382 ATGTGCGAGTAAGGAGTGCGCTTGAGCTGGTGATGA
1 ATGTGCGAGTAAGGAGTGCGCATAAGCCGGTGATGA
15812418 TGATGATAGG
Statistics
Matches: 65, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
42 2 0.03
43 63 0.97
ACGTcount: A:0.26, C:0.19, G:0.35, T:0.20
Consensus pattern (43 bp):
ATGTGCGAGTAAGGAGTGCGCATAAGCCGGTGATGACCCGACC
Found at i:15818776 original size:25 final size:25
Alignment explanation
Indices: 15818748--15818799 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
15818738 ATTTAGGTCC
15818748 CTAAAGGATCCTATATTGCAACTAA
1 CTAAAGGATCCTATATTGCAACTAA
*
15818773 CTAAAGGATCCTATATTGCAATTAA
1 CTAAAGGATCCTATATTGCAACTAA
15818798 CT
1 CT
15818800 CTGAAGGACC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (25 bp):
CTAAAGGATCCTATATTGCAACTAA
Found at i:15820388 original size:43 final size:43
Alignment explanation
Indices: 15820327--15820408 Score: 130
Period size: 43 Copynumber: 1.9 Consensus size: 43
15820317 TTGACTCGGC
*
15820327 TATGTGCGAGTAGGGAGTGCGCATAAGCCGAG-GATGACCCGAT
1 TATGTGCGAGTAGGGAGTGCGCATAACCCG-GTGATGACCCGAT
*
15820370 TATGTGGGAGTAGGGAGTGCGCATAACCCGGTGATGACC
1 TATGTGCGAGTAGGGAGTGCGCATAACCCGGTGATGACC
15820409 TAGCCATGTG
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
42 1 0.03
43 35 0.97
ACGTcount: A:0.24, C:0.18, G:0.38, T:0.20
Consensus pattern (43 bp):
TATGTGCGAGTAGGGAGTGCGCATAACCCGGTGATGACCCGAT
Found at i:15820418 original size:43 final size:43
Alignment explanation
Indices: 15820328--15820436 Score: 123
Period size: 43 Copynumber: 2.5 Consensus size: 43
15820318 TGACTCGGCT
* * **
15820328 ATGTGCGAGTAGGGAGTGCGCATAAGCCGAGGATGACCCGATT
1 ATGTGCGAGTAGGGAGTGCGCATAACCCGAGGATGACCAGACC
*
15820371 ATGTGGGAGTAGGGAGTGCGCATAACCCG-GTGATGACCTAG-CC
1 ATGTGCGAGTAGGGAGTGCGCATAACCCGAG-GATGACC-AGACC
* *
15820414 ATGTGTGAGTAAGGAGTGCGCAT
1 ATGTGCGAGTAGGGAGTGCGCAT
15820437 GAGCTGGTGA
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
42 1 0.02
43 55 0.96
44 1 0.02
ACGTcount: A:0.25, C:0.17, G:0.38, T:0.20
Consensus pattern (43 bp):
ATGTGCGAGTAGGGAGTGCGCATAACCCGAGGATGACCAGACC
Found at i:15820910 original size:60 final size:60
Alignment explanation
Indices: 15820781--15820964 Score: 201
Period size: 60 Copynumber: 3.1 Consensus size: 60
15820771 ACACTGTAGC
* * * *
15820781 TTCTCGCTACAGCAAAAAACTTTCTGTTTCTAGGTTGCAATTTCACTGCAGTGAGATTGA-A
1 TTCTCGCTGCAGCAAGAAACTTTCTGTTTCTGGGTTGCAATTTTACTGCAGTGAGA-T-ACA
* ** * ** *
15820842 TT-TTGCTGCAGTGAGAAACATTCTGTTTCTGGGTTATAATTTTGCTGCAGTGAGATACA
1 TTCTCGCTGCAGCAAGAAACTTTCTGTTTCTGGGTTGCAATTTTACTGCAGTGAGATACA
* * * *
15820901 TTCTCGCTGCGGCAAGAAACTTTCTATTTCTGGGTTGCAATTTTACTACAGTGAGAAACA
1 TTCTCGCTGCAGCAAGAAACTTTCTGTTTCTGGGTTGCAATTTTACTGCAGTGAGATACA
15820961 TTCT
1 TTCT
15820965 GTTTCTGGGT
Statistics
Matches: 99, Mismatches: 22, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
58 1 0.01
59 4 0.04
60 92 0.93
61 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (60 bp):
TTCTCGCTGCAGCAAGAAACTTTCTGTTTCTGGGTTGCAATTTTACTGCAGTGAGATACA
Found at i:15833127 original size:802 final size:802
Alignment explanation
Indices: 15831583--15833172 Score: 3027
Period size: 802 Copynumber: 2.0 Consensus size: 802
15831573 ATAAGTCAGG
15831583 GAAATTTTGATGAAAAGAAATTGTTTGGTATAGATTGAAACGAATTTTGCGTTATGAACATTATT
1 GAAATTTTGATGAAAAGAAATTGTTTGGTATAGATTGAAACGAATTTTGCGTTATGAACATTATT
*
15831648 GAGATATAACGTTTTTATATTGTCTCCATCTACTCAACTTTAGATGCTTTTGATGGTAATTATTT
66 GAGATATAACATTTTTATATTGTCTCCATCTACTCAACTTTAGATGCTTTTGATGGTAATTATTT
*
15831713 ACTCACTAGGATTATGTAATCTCATCTCTCTTCCTATCCATTTTTCAAGCTCAGGACAGTTTGTT
131 ACTCACTAGGATTATGTAATCTCATCCCTCTTCCTATCCATTTTTCAAGCTCAGGACAGTTTGTT
* *
15831778 GATAGTTGATTAAGACGAGAATTAATCTTGGAGTTGCATCCTAGAAAGTAAGGGTTCGTAGCCCT
196 GATAGTTGATTAAGACGAGAATTAATCTTGGAGTTGCATCCTAAAAAGTAAGGGTTCATAGCCCT
* * *
15831843 ACACCTTCTTGGACAGTTGGGGGCCCATGTATCACTATAAAAGTAATTTTATGCTTCAGTTATCT
261 ACACCTTCTTGGACAGTTAGGGGCCCACGTATCACTATAAAAGTAATTTTATACTTCAGTTATCT
*
15831908 AATTTAAAGTATGTATGAACATATTTAGCTTTTACACCATGTTTTTGACGGGTTTCAATATTTTT
326 AATTTAAAGTATGTATGAACATATTTAGCTTTTACACCATGTTTTTGACGGGTTTCAATATTTTC
*
15831973 GAAAAAAAAATATGACTAAAATAGCCCTGTCAGATAGAAATAAATTTTCATTGTTTTTTGATGGG
391 GAAAAAAAAATATGACTAAAATAGCCCTGTCAGATAGAAATAAATTTTCATTGTTTTTGGATGGG
15832038 AAAATCGTCCATATCGTTTCAAAACACGATTTTAGTTACTGTCGATCACAAGGGAGGTAAGAAAA
456 AAAATCGTCCATATCGTTTCAAAACACGATTTTAGTTACTGTCGATCACAAGGGAGGTAAGAAAA
15832103 CTGATACGAAAGGCTAGCGAGGTTTCGGTCAGCATTTAGGGTAAAGAATGTCTGATGAGACTTCG
521 CTGATACGAAAGGCTAGCGAGGTTTCGGTCAGCATTTAGGGTAAAGAATGTCTGATGAGACTTCG
* *
15832168 CGACAGTTGTCACAGGCTTGATGGGAGTTTCGGGTCGTGACAACCTGCTACTGCAGATTCCTCTG
586 CGACAGTTGTCACAGGCTCGATGGGAGTTTCGGGTCATGACAACCTGCTACTGCAGATTCCTCTG
*
15832233 AAACACCAAGGGCTTCACTAGCACAGCAAGGTGTTGGAAGTTCAGGCTTGCAAGCAAAAGGGTCT
651 AAACACCAAGGGCTTCACTAGCACAGCAAGGTGCTGGAAGTTCAGGCTTGCAAGCAAAAGGGTCT
15832298 GATCCTCATGGTGTAAGTTATGGTGTTCCAGTTGAAGGTCATGAGCCAAAAGAGGAACAGCCAAG
716 GATCCTCATGGTGTAAGTTATGGTGTTCCAGTTGAAGGTCATGAGCCAAAAGAGGAACAGCCAAG
15832363 AAAATCACGTTTGAAGGGTAAA
781 AAAATCACGTTTGAAGGGTAAA
15832385 GAAATTTTGATGAAAAGAAATTGTTTGGTATAGATTGAAACGAATTTTGCGTTATGAACATTATT
1 GAAATTTTGATGAAAAGAAATTGTTTGGTATAGATTGAAACGAATTTTGCGTTATGAACATTATT
*
15832450 GAGATATAACATTTTTATATTGTCTCCATCTACTCAGCTTTAGATGCTTTTGATGGTAATTATTT
66 GAGATATAACATTTTTATATTGTCTCCATCTACTCAACTTTAGATGCTTTTGATGGTAATTATTT
15832515 ACTCACTAGGATTATGTAATCTCATCCCTCTTCCTATCCATTTTTCAAGCTCAGGACAGTTTGTT
131 ACTCACTAGGATTATGTAATCTCATCCCTCTTCCTATCCATTTTTCAAGCTCAGGACAGTTTGTT
15832580 GATAGTTGATTAAGACGAGAATTAATCTTGGAGTTGCATCCTAAAAAGTAAGGGTTCATAGCCCT
196 GATAGTTGATTAAGACGAGAATTAATCTTGGAGTTGCATCCTAAAAAGTAAGGGTTCATAGCCCT
*
15832645 ACACCTTCTTGGACAGTTAGGGGCCCACGTATCACTATGAAAGTAATTTTATACTTCAGTTATCT
261 ACACCTTCTTGGACAGTTAGGGGCCCACGTATCACTATAAAAGTAATTTTATACTTCAGTTATCT
*
15832710 AATTTAAAGTATGTATGAACATATTTAGCTTTTACACCATGTTTTTGACTGGTTTCAATATTTTC
326 AATTTAAAGTATGTATGAACATATTTAGCTTTTACACCATGTTTTTGACGGGTTTCAATATTTTC
15832775 GAAAAAAAAATATGACTAAAATAGCCCTGTCAGATAGAAATAAATTTTCATTGTTTTTGGATGGG
391 GAAAAAAAAATATGACTAAAATAGCCCTGTCAGATAGAAATAAATTTTCATTGTTTTTGGATGGG
15832840 AAAATCGTCCATATCGTTTCAAAACACGATTTTAGTTACTGTCGATCACAAGGGAGGTAAGAAAA
456 AAAATCGTCCATATCGTTTCAAAACACGATTTTAGTTACTGTCGATCACAAGGGAGGTAAGAAAA
15832905 CTGATACGAAAGGCTAGCGAGGTTTCGGTCAGCATTTAGGGTAAAGAATGTCTGATGAGACTTCG
521 CTGATACGAAAGGCTAGCGAGGTTTCGGTCAGCATTTAGGGTAAAGAATGTCTGATGAGACTTCG
15832970 CGACAGTTGTCACAGGCTCGATGGGAGTTTCGGGTCATGACAACCTGCTACTGCAGATTCCTCTG
586 CGACAGTTGTCACAGGCTCGATGGGAGTTTCGGGTCATGACAACCTGCTACTGCAGATTCCTCTG
*
15833035 AAACACCAAGTGCTTCACTAGCACAGCAAGGTGCTGGAAGTTCAGGCTTGCAAGCAAAAGGGTCT
651 AAACACCAAGGGCTTCACTAGCACAGCAAGGTGCTGGAAGTTCAGGCTTGCAAGCAAAAGGGTCT
15833100 GATCCTCATGGTGTAAGTTATGGTGTTCCAGTTGAAGGTCATGAGCCAAAAGAGGAACAGCCAAG
716 GATCCTCATGGTGTAAGTTATGGTGTTCCAGTTGAAGGTCATGAGCCAAAAGAGGAACAGCCAAG
*
15833165 AAATTCAC
781 AAAATCAC
15833173 CTTCACCTGA
Statistics
Matches: 771, Mismatches: 17, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
802 771 1.00
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32
Consensus pattern (802 bp):
GAAATTTTGATGAAAAGAAATTGTTTGGTATAGATTGAAACGAATTTTGCGTTATGAACATTATT
GAGATATAACATTTTTATATTGTCTCCATCTACTCAACTTTAGATGCTTTTGATGGTAATTATTT
ACTCACTAGGATTATGTAATCTCATCCCTCTTCCTATCCATTTTTCAAGCTCAGGACAGTTTGTT
GATAGTTGATTAAGACGAGAATTAATCTTGGAGTTGCATCCTAAAAAGTAAGGGTTCATAGCCCT
ACACCTTCTTGGACAGTTAGGGGCCCACGTATCACTATAAAAGTAATTTTATACTTCAGTTATCT
AATTTAAAGTATGTATGAACATATTTAGCTTTTACACCATGTTTTTGACGGGTTTCAATATTTTC
GAAAAAAAAATATGACTAAAATAGCCCTGTCAGATAGAAATAAATTTTCATTGTTTTTGGATGGG
AAAATCGTCCATATCGTTTCAAAACACGATTTTAGTTACTGTCGATCACAAGGGAGGTAAGAAAA
CTGATACGAAAGGCTAGCGAGGTTTCGGTCAGCATTTAGGGTAAAGAATGTCTGATGAGACTTCG
CGACAGTTGTCACAGGCTCGATGGGAGTTTCGGGTCATGACAACCTGCTACTGCAGATTCCTCTG
AAACACCAAGGGCTTCACTAGCACAGCAAGGTGCTGGAAGTTCAGGCTTGCAAGCAAAAGGGTCT
GATCCTCATGGTGTAAGTTATGGTGTTCCAGTTGAAGGTCATGAGCCAAAAGAGGAACAGCCAAG
AAAATCACGTTTGAAGGGTAAA
Found at i:15833616 original size:19 final size:20
Alignment explanation
Indices: 15833589--15833634 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
15833579 AGGAGACAAG
*
15833589 ATAAAATTTTTA-GAATAAA
1 ATAATATTTTTATGAATAAA
*
15833608 ATAATA-TTTTATTAATAAA
1 ATAATATTTTTATGAATAAA
15833627 ATAATATT
1 ATAATATT
15833635 AAAATATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 5 0.22
19 17 0.74
20 1 0.04
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.43
Consensus pattern (20 bp):
ATAATATTTTTATGAATAAA
Found at i:15834078 original size:20 final size:20
Alignment explanation
Indices: 15834033--15834070 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
15834023 TTTTGGCCCC
15834033 ATTTGACTTATTGGAGTATA
1 ATTTGACTTATTGGAGTATA
15834053 ATTTGACTTATTGGAGTA
1 ATTTGACTTATTGGAGTA
15834071 AGATTTGAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.29, C:0.05, G:0.21, T:0.45
Consensus pattern (20 bp):
ATTTGACTTATTGGAGTATA
Found at i:15834160 original size:28 final size:27
Alignment explanation
Indices: 15834122--15834175 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 27
15834112 ATTTAGAGCA
*
15834122 TAGGGGTAAAAT-GATAATTTTACCACCC
1 TAGGGGCAAAATAG-TAATTTT-CCACCC
15834150 TAGGGGCAAAATAGTAATTTTCCACC
1 TAGGGGCAAAATAGTAATTTTCCACC
15834176 ACCAGGACAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
27 5 0.21
28 18 0.75
29 1 0.04
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.28
Consensus pattern (27 bp):
TAGGGGCAAAATAGTAATTTTCCACCC
Found at i:15835320 original size:16 final size:16
Alignment explanation
Indices: 15835299--15835329 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15835289 AAATATTATG
*
15835299 TTTTTTAATTAAAATA
1 TTTTTTAATAAAAATA
15835315 TTTTTTAATAAAAAT
1 TTTTTTAATAAAAAT
15835330 GAGATTTATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
TTTTTTAATAAAAATA
Found at i:15840533 original size:17 final size:17
Alignment explanation
Indices: 15840511--15840547 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
15840501 AGCTAAATAT
15840511 GCACACACTAAGGGGGA
1 GCACACACTAAGGGGGA
*
15840528 GCACACACTTAGGGGGA
1 GCACACACTAAGGGGGA
15840545 GCA
1 GCA
15840548 ATCCTCATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.32, C:0.24, G:0.35, T:0.08
Consensus pattern (17 bp):
GCACACACTAAGGGGGA
Found at i:15847059 original size:40 final size:38
Alignment explanation
Indices: 15847006--15847100 Score: 100
Period size: 38 Copynumber: 2.4 Consensus size: 38
15846996 AGCTCATGTG
* * * * *
15847006 CATCCTCCTACATCGTGCACATAGCTGGAGTCATCGAGTG
1 CATCCCCCCACATCGTGCAC--AGCTAGAGCCATCGAGTA
* * *
15847046 CATCTCCCCACATCGTGCACAGCTAGTGCCATCGTGTA
1 CATCCCCCCACATCGTGCACAGCTAGAGCCATCGAGTA
15847084 CATCCCCCCACATCGTG
1 CATCCCCCCACATCGTG
15847101 GATACGGGCA
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
38 29 0.63
40 17 0.37
ACGTcount: A:0.21, C:0.37, G:0.19, T:0.23
Consensus pattern (38 bp):
CATCCCCCCACATCGTGCACAGCTAGAGCCATCGAGTA
Found at i:15859561 original size:20 final size:20
Alignment explanation
Indices: 15859504--15859566 Score: 101
Period size: 20 Copynumber: 3.2 Consensus size: 20
15859494 TATATACCCA
*
15859504 TCATCATCATC-TCACCAAC
1 TCATCATCATCATCACCAGC
*
15859523 CCATCATCATCATCACCAGC
1 TCATCATCATCATCACCAGC
15859543 TCATCATCATCATCACCAGC
1 TCATCATCATCATCACCAGC
15859563 TCAT
1 TCAT
15859567 GCGCACTCCC
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
19 10 0.25
20 30 0.75
ACGTcount: A:0.30, C:0.41, G:0.03, T:0.25
Consensus pattern (20 bp):
TCATCATCATCATCACCAGC
Found at i:15859613 original size:43 final size:43
Alignment explanation
Indices: 15859565--15859683 Score: 168
Period size: 43 Copynumber: 2.8 Consensus size: 43
15859555 TCACCAGCTC
** * *
15859565 ATGCGCACTCCCTACTCGCACATGGCTGGGTCATCAC-CGGGTT
1 ATGCGCACTCCCTACTCGCACATAACCGGGTCATC-CTCGGCTT
15859608 ATGCGCACTCCCTACTCGCACATAACCGGGTCATCCTCGGCTT
1 ATGCGCACTCCCTACTCGCACATAACCGGGTCATCCTCGGCTT
* *
15859651 ATGCGCACTCCCTACTCGCACATAGCCGAGTCA
1 ATGCGCACTCCCTACTCGCACATAACCGGGTCA
15859684 ACATAATTAC
Statistics
Matches: 69, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
42 1 0.01
43 68 0.99
ACGTcount: A:0.19, C:0.38, G:0.21, T:0.22
Consensus pattern (43 bp):
ATGCGCACTCCCTACTCGCACATAACCGGGTCATCCTCGGCTT
Found at i:15871555 original size:43 final size:43
Alignment explanation
Indices: 15871492--15871609 Score: 146
Period size: 43 Copynumber: 2.7 Consensus size: 43
15871482 TGTTGACTCG
*
15871492 GCTATGTGCGAGTAGGGAGTGCGCATCAGCTGAGGATGACCCA
1 GCTATGTGCGAGTAGGGAGTGCGCATAAGCTGAGGATGACCCA
* * * * * *
15871535 GTTATGTTCGAGTAGGGAGTGCGCATAACCCGATGATGACCTA
1 GCTATGTGCGAGTAGGGAGTGCGCATAAGCTGAGGATGACCCA
* * *
15871578 GCCATGTGCGAGTAGGGAGTGGGCATGAGCTG
1 GCTATGTGCGAGTAGGGAGTGCGCATAAGCTG
15871610 GTGATGATGA
Statistics
Matches: 61, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
43 61 1.00
ACGTcount: A:0.23, C:0.19, G:0.37, T:0.21
Consensus pattern (43 bp):
GCTATGTGCGAGTAGGGAGTGCGCATAAGCTGAGGATGACCCA
Found at i:15871664 original size:2 final size:2
Alignment explanation
Indices: 15871659--15871690 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
15871649 TATATACGTG
*
15871659 TA TA TA TA TA TA TA TA TA TA TA TA CA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15871691 ANNNNNNNNN
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:15874673 original size:10 final size:10
Alignment explanation
Indices: 15874658--15874687 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
15874648 CCCTAGGGTT
15874658 CTTGTTCTTC
1 CTTGTTCTTC
15874668 CTTGTTCTTC
1 CTTGTTCTTC
15874678 CTTTGTTCTT
1 C-TTGTTCTT
15874688 GCTTTGGCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 11 0.58
11 8 0.42
ACGTcount: A:0.00, C:0.27, G:0.10, T:0.63
Consensus pattern (10 bp):
CTTGTTCTTC
Found at i:15874685 original size:11 final size:11
Alignment explanation
Indices: 15874659--15874693 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
15874649 CCTAGGGTTC
15874659 TTGTTCTTCC-
1 TTGTTCTTCCT
15874669 TTGTTCTTCCT
1 TTGTTCTTCCT
*
15874680 TTGTTCTTGCT
1 TTGTTCTTCCT
15874691 TTG
1 TTG
15874694 GCTGGCCACA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 10 0.43
11 13 0.57
ACGTcount: A:0.00, C:0.23, G:0.14, T:0.63
Consensus pattern (11 bp):
TTGTTCTTCCT
Found at i:15881455 original size:10 final size:11
Alignment explanation
Indices: 15881436--15881465 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
15881426 CCCTAAGGTT
15881436 TTTGTTCTTCC
1 TTTGTTCTTCC
15881447 TTT-TTCTTCC
1 TTTGTTCTTCC
15881457 TTTGTTCTT
1 TTTGTTCTT
15881466 GCTCTGGCTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.00, C:0.23, G:0.07, T:0.70
Consensus pattern (11 bp):
TTTGTTCTTCC
Found at i:15892453 original size:16 final size:16
Alignment explanation
Indices: 15892432--15892465 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
15892422 ATCAAAACCT
* *
15892432 AATGCAAAGGTTTTAC
1 AATGCAAAAGTCTTAC
15892448 AATGCAAAAGTCTTAC
1 AATGCAAAAGTCTTAC
15892464 AA
1 AA
15892466 AAAGAGGTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.26
Consensus pattern (16 bp):
AATGCAAAAGTCTTAC
Found at i:15892746 original size:24 final size:24
Alignment explanation
Indices: 15892687--15892746 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 24
15892677 GCCACGGTCT
**
15892687 GTGATTATACGTGGCAAGGCCATTA
1 GTGA-TATACGTGGCAAGGCCACAA
*
15892712 GATGATATACGTGGCTAGGCCACAA
1 G-TGATATACGTGGCAAGGCCACAA
15892737 GTGATATACG
1 GTGATATACG
15892747 CGGTTGCGAC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 9 0.29
25 19 0.61
26 3 0.10
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (24 bp):
GTGATATACGTGGCAAGGCCACAA
Found at i:15896575 original size:4 final size:4
Alignment explanation
Indices: 15896566--15896607 Score: 56
Period size: 4 Copynumber: 11.5 Consensus size: 4
15896556 AATATTTCTC
15896566 TTAT TTAT TTAT TTA- -TAT TTAT TTA- TTAT TTA- TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT
15896608 TCTTTTTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
2 2 0.06
3 6 0.18
4 26 0.76
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
TTAT
Found at i:15896586 original size:10 final size:11
Alignment explanation
Indices: 15896570--15896599 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
15896560 TTTCTCTTAT
15896570 TTATTTATTTA
1 TTATTTATTTA
15896581 -TATTTATTTA
1 TTATTTATTTA
15896591 TTATTTATT
1 TTATTTATT
15896600 ATTTATTTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (11 bp):
TTATTTATTTA
Found at i:15896586 original size:14 final size:14
Alignment explanation
Indices: 15896567--15896607 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
15896557 ATATTTCTCT
15896567 TATTTATTTATTTA
1 TATTTATTTATTTA
15896581 TATTTATTTA-TTA
1 TATTTATTTATTTA
*
15896594 TTTATTATTTATTT
1 TAT-TTATTTATTT
15896608 TCTTTTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
13 5 0.21
14 17 0.71
15 2 0.08
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (14 bp):
TATTTATTTATTTA
Found at i:15896589 original size:18 final size:18
Alignment explanation
Indices: 15896566--15896607 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 18
15896556 AATATTTCTC
15896566 TTATTTATTTATTTA-TAT
1 TTATTTA-TTATTTATTAT
15896584 TTATTTATTATTTATTAT
1 TTATTTATTATTTATTAT
15896602 TTATTT
1 TTATTT
15896608 TCTTTTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 7 0.30
18 16 0.70
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (18 bp):
TTATTTATTATTTATTAT
Found at i:15904715 original size:22 final size:22
Alignment explanation
Indices: 15904685--15904726 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
15904675 GCTACAGTAC
15904685 CATTCTCGCTGCAACGAGAATG
1 CATTCTCGCTGCAACGAGAATG
* *
15904707 CATTTTCGCTGCAGCGAGAA
1 CATTCTCGCTGCAACGAGAA
15904727 CCAAACTAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (22 bp):
CATTCTCGCTGCAACGAGAATG
Found at i:15912743 original size:212 final size:205
Alignment explanation
Indices: 15912378--15912758 Score: 532
Period size: 212 Copynumber: 1.8 Consensus size: 205
15912368 CAGGTTGATA
* * *
15912378 GTATAAGCCATACAAGCCAATCTATAGATGTATGGGAATTGCATTTTTTAGATATTCATGTACGA
1 GTATAAGCCATACAAGCCAATCTATAGATGTAAGGGAATTGCATTTTTGAGATATTCATGCACGA
* * *
15912443 CATTTTTGTAATAACATTGAGGTAGTTCTTTATTCATAAGTTTGTTATTTAATTATTATTTATAC
66 CATTTTTGTAATAACATTGAGGTAGTTCATTATCCATAAGTTTGTTATCTAATTATTATTTATAC
15912508 CTATGTAGATAAAGCCTATGGAACTATATATGCCTTGTAAAGGCATCAAAAGGCAAAGACCTAAA
131 CTATGTAGATAAAGCCTATGGAACTATATATGCCTTGTAAAGGCATCAAAAGGCAAAGACCTAAA
15912573 TGGGTTGTTG
196 TGGGTTGTTG
* * * * *
15912583 GTATAAGCCCTACAAGCTAATTTATGGATGTAAGGGAATTGCATTTTTGAGATATTCATGCATGA
1 GTATAAGCCATACAAGCCAATCTATAGATGTAAGGGAATTGCATTTTTGAGATATTCATGCACGA
* *
15912648 CATTTTTGTTGTTTATAATAACATTGAGGTAGTTCATTCTCCATTAGTTT-TTGATCTAATTATT
66 CA--TTT-TTG----TAATAACATTGAGGTAGTTCATTATCCATAAGTTTGTT-ATCTAATTATT
* *
15912712 ATTTATACTTATGTAGATAAAG-CTCATGGAACTATGTATGCCTTGTA
123 ATTTATACCTATGTAGATAAAGCCT-ATGGAACTATATATGCCTTGTA
15912759 TTGGGATACA
Statistics
Matches: 152, Mismatches: 15, Indels: 11
0.85 0.08 0.06
Matches are distributed among these distances:
205 59 0.39
207 3 0.02
208 3 0.02
211 4 0.03
212 83 0.55
ACGTcount: A:0.31, C:0.12, G:0.17, T:0.39
Consensus pattern (205 bp):
GTATAAGCCATACAAGCCAATCTATAGATGTAAGGGAATTGCATTTTTGAGATATTCATGCACGA
CATTTTTGTAATAACATTGAGGTAGTTCATTATCCATAAGTTTGTTATCTAATTATTATTTATAC
CTATGTAGATAAAGCCTATGGAACTATATATGCCTTGTAAAGGCATCAAAAGGCAAAGACCTAAA
TGGGTTGTTG
Found at i:15915754 original size:43 final size:43
Alignment explanation
Indices: 15915676--15915774 Score: 144
Period size: 43 Copynumber: 2.3 Consensus size: 43
15915666 GTGCGAATAA
* * ****
15915676 GGAGTGCGCATAAGCCGATGATGGCCCGGTTATGTGTGAGTAG
1 GGAGTGCGCATAACCCGATGATGACCCAACCATGTGTGAGTAG
15915719 GGAGTGCGCATAACCCGATGATGACCCAACCATGTGTGAGTAG
1 GGAGTGCGCATAACCCGATGATGACCCAACCATGTGTGAGTAG
15915762 GGAGTGCGCATAA
1 GGAGTGCGCATAA
15915775 GCTAGTGATG
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 50 1.00
ACGTcount: A:0.25, C:0.19, G:0.35, T:0.20
Consensus pattern (43 bp):
GGAGTGCGCATAACCCGATGATGACCCAACCATGTGTGAGTAG
Found at i:15916284 original size:23 final size:23
Alignment explanation
Indices: 15916254--15916298 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
15916244 AATGAGATTC
*
15916254 AATCTCGCTACAGCGAAAAACTG
1 AATCTCGCTACAACGAAAAACTG
*
15916277 AATCTCGCTGCAACGAAAAACT
1 AATCTCGCTACAACGAAAAACT
15916299 CTCGGTTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.40, C:0.27, G:0.16, T:0.18
Consensus pattern (23 bp):
AATCTCGCTACAACGAAAAACTG
Found at i:15920001 original size:39 final size:39
Alignment explanation
Indices: 15919947--15920055 Score: 191
Period size: 39 Copynumber: 2.8 Consensus size: 39
15919937 AATAAGCAAG
15919947 ACAGAAAGTTTCTCGCTGCAGCGAAATTCATGCCATAAA
1 ACAGAAAGTTTCTCGCTGCAGCGAAATTCATGCCATAAA
* *
15919986 ACAGAAAGTTTCTCGCTGTAGCGAAACTCATGCCATAAA
1 ACAGAAAGTTTCTCGCTGCAGCGAAATTCATGCCATAAA
*
15920025 ACAGAAAGTTTCTCGCTGCAGCGAGATTCAT
1 ACAGAAAGTTTCTCGCTGCAGCGAAATTCAT
15920056 TCTCACTGTA
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 65 1.00
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.24
Consensus pattern (39 bp):
ACAGAAAGTTTCTCGCTGCAGCGAAATTCATGCCATAAA
Found at i:15920335 original size:2 final size:2
Alignment explanation
Indices: 15920328--15920358 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
15920318 TATGCATGTG
15920328 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
15920359 TCTTCATCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:15920448 original size:2 final size:2
Alignment explanation
Indices: 15920435--15920471 Score: 65
Period size: 2 Copynumber: 18.0 Consensus size: 2
15920425 TCATCATCTN
15920435 AT AT AGT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15920472 TCTTCATCAT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 32 0.94
3 2 0.06
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:15920479 original size:113 final size:112
Alignment explanation
Indices: 15920327--15920546 Score: 431
Period size: 113 Copynumber: 2.0 Consensus size: 112
15920317 CTATGCATGT
15920327 GTATATATATATATATATATATATATATATATTCTTCATCATGCGCACCCTCCCATCATCATCAG
1 GTATATATATATATATATATATATATATATATTCTTCATCATGCGCACCCTCCCATCATCATCAG
15920392 CTCATATGCACTTCCTACTAGCACATGGCTAGGTCATCATCTNATATA
66 CTCATATGCACTTCCTACTAGCACATGGCTAGGTCATCATCT-ATATA
15920440 GTATATATATATATATATATATATATATATATTCTTCATCATGCGCACCCTCCCATCATCATCAG
1 GTATATATATATATATATATATATATATATATTCTTCATCATGCGCACCCTCCCATCATCATCAG
15920505 CTCATATGCACTTCCTACTAGCACATGGCTAGGTCATCATCT
66 CTCATATGCACTTCCTACTAGCACATGGCTAGGTCATCATCT
15920547 GCTTATATGC
Statistics
Matches: 107, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
113 107 1.00
ACGTcount: A:0.30, C:0.25, G:0.09, T:0.35
Consensus pattern (112 bp):
GTATATATATATATATATATATATATATATATTCTTCATCATGCGCACCCTCCCATCATCATCAG
CTCATATGCACTTCCTACTAGCACATGGCTAGGTCATCATCTATATA
Found at i:15920593 original size:42 final size:42
Alignment explanation
Indices: 15920536--15920709 Score: 195
Period size: 42 Copynumber: 4.1 Consensus size: 42
15920526 CACATGGCTA
* * ** *
15920536 GGTCATCATCTGCTTATATGCACTCCCACTCGCACATAGCCA
1 GGTCAACATCGGCTTATGCGCACTCCCACTCGCACATAGCCG
* * * ** * *
15920578 AGTCAACATTGGCTTATGCACACTTACACTAGCACATAACCG
1 GGTCAACATCGGCTTATGCGCACTCCCACTCGCACATAGCCG
* *
15920620 GGTCAGCATCGGCTTATGCGCACTCCCACTCGCACATAGTCG
1 GGTCAACATCGGCTTATGCGCACTCCCACTCGCACATAGCCG
* * *
15920662 GGTCAACATCGACTTATGTGCACTCCCACTTGCACATAGCCG
1 GGTCAACATCGGCTTATGCGCACTCCCACTCGCACATAGCCG
15920704 GGTCAA
1 GGTCAA
15920710 TATCATTACA
Statistics
Matches: 106, Mismatches: 26, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
42 106 1.00
ACGTcount: A:0.25, C:0.33, G:0.18, T:0.24
Consensus pattern (42 bp):
GGTCAACATCGGCTTATGCGCACTCCCACTCGCACATAGCCG
Found at i:15929358 original size:43 final size:43
Alignment explanation
Indices: 15929298--15929476 Score: 261
Period size: 43 Copynumber: 4.2 Consensus size: 43
15929288 AGCCGAGTCA
*
15929298 TCATCATCACCTTATGCGCACTCCCTACTCGCACATAGCCGGG
1 TCATCATCAGCTTATGCGCACTCCCTACTCGCACATAGCCGGG
* * *
15929341 TCATCATCGGCTTATGCGTACTCCTTACTCGCACATAGCCGGG
1 TCATCATCAGCTTATGCGCACTCCCTACTCGCACATAGCCGGG
* **
15929384 TCATCATCGGCTTATGCGCACTCCCTACTCGCACATAGCTAGG
1 TCATCATCAGCTTATGCGCACTCCCTACTCGCACATAGCCGGG
* *
15929427 TCATCATCAGCTCATGCGCACTCCC-ACATCGCACATAGCTGGG
1 TCATCATCAGCTTATGCGCACTCCCTAC-TCGCACATAGCCGGG
15929470 TCATCAT
1 TCATCAT
15929477 TATCACACAA
Statistics
Matches: 124, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
42 2 0.02
43 122 0.98
ACGTcount: A:0.21, C:0.36, G:0.18, T:0.25
Consensus pattern (43 bp):
TCATCATCAGCTTATGCGCACTCCCTACTCGCACATAGCCGGG
Found at i:15930620 original size:23 final size:24
Alignment explanation
Indices: 15930577--15930627 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 24
15930567 CATCACTATT
* *
15930577 CTTATTTTCTTCGTTACTTTAT-C
1 CTTATTTTCATCATTACTTTATGC
15930600 CTTATTTTCATCATT-CATTTATGC
1 CTTATTTTCATCATTAC-TTTATGC
15930624 CTTA
1 CTTA
15930628 GGCCTACTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 1 0.04
23 18 0.75
24 5 0.21
ACGTcount: A:0.18, C:0.22, G:0.04, T:0.57
Consensus pattern (24 bp):
CTTATTTTCATCATTACTTTATGC
Found at i:15937132 original size:22 final size:22
Alignment explanation
Indices: 15937107--15937148 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
15937097 GACTAATCCT
*
15937107 CGCTGCAGTAAAAAGGCATTCC
1 CGCTGCAGCAAAAAGGCATTCC
*
15937129 CGCTGCAGCGAAAAGGCATT
1 CGCTGCAGCAAAAAGGCATT
15937149 TTCGCTATAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.31, C:0.26, G:0.26, T:0.17
Consensus pattern (22 bp):
CGCTGCAGCAAAAAGGCATTCC
Found at i:15937154 original size:22 final size:22
Alignment explanation
Indices: 15937105--15937154 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
15937095 ATGACTAATC
*
15937105 CTCGCTGCAGTAAAAAGGCATT
1 CTCGCTGCAGCAAAAAGGCATT
* *
15937127 CCCGCTGCAGCGAAAAGGCATT
1 CTCGCTGCAGCAAAAAGGCATT
*
15937149 TTCGCT
1 CTCGCT
15937155 ATAGTGAAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.22
Consensus pattern (22 bp):
CTCGCTGCAGCAAAAAGGCATT
Found at i:15938946 original size:2 final size:2
Alignment explanation
Indices: 15938939--15938970 Score: 55
Period size: 2 Copynumber: 15.5 Consensus size: 2
15938929 TTATTTTTAG
15938939 TA TA TA TA TA TA TA TA TA TA TA TGA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA T
15938971 GAAATGCGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 27 0.93
3 2 0.07
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:15943123 original size:40 final size:39
Alignment explanation
Indices: 15943078--15943199 Score: 104
Period size: 40 Copynumber: 3.1 Consensus size: 39
15943068 TGAAAGGTGG
* *
15943078 ATGATGATAGTGCTTGTGTGCATGATGTGGGGGGATGTAC
1 ATGATGGTAGTGCAT-TGTGCATGATGTGGGGGGATGTAC
* * * *
15943118 ATGATGGCACTG-ATTGTGCATAATGTGGGGGGATGCAC
1 ATGATGGTAGTGCATTGTGCATGATGTGGGGGGATGTAC
* * * * *
15943156 ACGATGGT-GCGCGCTATGTGCAGGATGTGGGGGGATATAC
1 ATGATGGTAGTGC-AT-TGTGCATGATGTGGGGGGATGTAC
15943196 ATGA
1 ATGA
15943200 GCCGGGTGTG
Statistics
Matches: 63, Mismatches: 16, Indels: 6
0.74 0.19 0.07
Matches are distributed among these distances:
37 1 0.02
38 28 0.44
39 2 0.03
40 32 0.51
ACGTcount: A:0.22, C:0.11, G:0.39, T:0.27
Consensus pattern (39 bp):
ATGATGGTAGTGCATTGTGCATGATGTGGGGGGATGTAC
Found at i:15946544 original size:10 final size:10
Alignment explanation
Indices: 15946529--15946555 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
15946519 TATCACATAT
15946529 ACATATATAA
1 ACATATATAA
15946539 ACATATATAA
1 ACATATATAA
15946549 ACATATA
1 ACATATA
15946556 CATCACCCAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.59, C:0.11, G:0.00, T:0.30
Consensus pattern (10 bp):
ACATATATAA
Found at i:15946621 original size:37 final size:37
Alignment explanation
Indices: 15946580--15946687 Score: 146
Period size: 37 Copynumber: 2.9 Consensus size: 37
15946570 TTCATCGTCA
* * *
15946580 TGTGCACTCTATACTCGCATA-TTCTATCATCATCATG
1 TGTGCACTCCATACTCGCACACTTC-AACATCATCATG
*
15946617 TGTGCACTCCCTACTCGCACACTTCAACATCATCATG
1 TGTGCACTCCATACTCGCACACTTCAACATCATCATG
* *
15946654 TGTGCACTCCCTACTTGCACACTTCAACATCATC
1 TGTGCACTCCATACTCGCACACTTCAACATCATC
15946688 CCACAACATT
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
37 62 0.95
38 3 0.05
ACGTcount: A:0.24, C:0.34, G:0.10, T:0.31
Consensus pattern (37 bp):
TGTGCACTCCATACTCGCACACTTCAACATCATCATG
Found at i:15947394 original size:20 final size:20
Alignment explanation
Indices: 15947366--15947404 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
15947356 AGAAGAACAA
15947366 GAAGCTGCTGGAAAAATGAG
1 GAAGCTGCTGGAAAAATGAG
* *
15947386 GAAGTTGCTGGAGAAATGA
1 GAAGCTGCTGGAAAAATGA
15947405 TATATTTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.08, G:0.36, T:0.18
Consensus pattern (20 bp):
GAAGCTGCTGGAAAAATGAG
Found at i:15947662 original size:12 final size:12
Alignment explanation
Indices: 15947640--15947672 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
15947630 ATTTCCTTCA
15947640 TCATTTTATCCT
1 TCATTTTATCCT
15947652 T-ATTTTCATCCT
1 TCATTTT-ATCCT
15947664 TCATTTTAT
1 TCATTTTAT
15947673 TTCTTAGGCC
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 5 0.26
12 9 0.47
13 5 0.26
ACGTcount: A:0.18, C:0.21, G:0.00, T:0.61
Consensus pattern (12 bp):
TCATTTTATCCT
Found at i:15949311 original size:42 final size:43
Alignment explanation
Indices: 15949236--15949353 Score: 123
Period size: 42 Copynumber: 2.8 Consensus size: 43
15949226 GTAATTATAT
* * * * * * *
15949236 TGACTCAGCTATGTGCAAGTAGGGAGTGTGCATAATCGA-GGA
1 TGACCCAGCCATGTGCGAGTAGGGAGTGCGCATAACCCATAGA
* *
15949278 TGACCCGGTTC-TGTGCGAGTAGGGAGTGCGCATAACCCATAGA
1 TGACCCAG-CCATGTGCGAGTAGGGAGTGCGCATAACCCATAGA
*
15949321 TGACCCAGCCATGTGCGAGTAGGGAATGCGCAT
1 TGACCCAGCCATGTGCGAGTAGGGAGTGCGCAT
15949354 GAGCTGGAGA
Statistics
Matches: 61, Mismatches: 12, Indels: 5
0.78 0.15 0.06
Matches are distributed among these distances:
42 31 0.51
43 30 0.49
ACGTcount: A:0.25, C:0.20, G:0.33, T:0.21
Consensus pattern (43 bp):
TGACCCAGCCATGTGCGAGTAGGGAGTGCGCATAACCCATAGA
Found at i:15949796 original size:60 final size:60
Alignment explanation
Indices: 15949731--15949865 Score: 180
Period size: 60 Copynumber: 2.2 Consensus size: 60
15949721 CGCTGCAGCA
* * * * *
15949731 AGAAACTTTCTGTTTCTGGGTTGCAATTTCGCTGCAGCGAGATTGAATTTGGTTGCAACG
1 AGAAACTTTCTGTTTCTGGGTTACAATTTCGCAGCAGCGAGATTCAATCTCGTTGCAACG
* * * *
15949791 AGAAACATTCTGTTTCTGGGTTATAATTTCGCAGCAGCGAGATTCAATCTCGTTGTAGCG
1 AGAAACTTTCTGTTTCTGGGTTACAATTTCGCAGCAGCGAGATTCAATCTCGTTGCAACG
*
15949851 AAAAACTTTCTGTTT
1 AGAAACTTTCTGTTT
15949866 TGGTCTCCTA
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
60 64 1.00
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.36
Consensus pattern (60 bp):
AGAAACTTTCTGTTTCTGGGTTACAATTTCGCAGCAGCGAGATTCAATCTCGTTGCAACG
Found at i:15953514 original size:20 final size:20
Alignment explanation
Indices: 15953489--15953532 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
15953479 ATTTATCGAT
*
15953489 ACATATGCCTATGTATTGAA
1 ACATATGCATATGTATTGAA
* *
15953509 ACATATGCATGTGTATTGAT
1 ACATATGCATATGTATTGAA
15953529 ACAT
1 ACAT
15953533 TCGAGGAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36
Consensus pattern (20 bp):
ACATATGCATATGTATTGAA
Found at i:15957347 original size:17 final size:19
Alignment explanation
Indices: 15957306--15957347 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
15957296 ATGTATATAT
15957306 ATGAATATATGTTGTGCATTG
1 ATGAATATATGTTGTG-A-TG
15957327 ATGAATA-ATGTTGTG-TG
1 ATGAATATATGTTGTGATG
15957344 ATGA
1 ATGA
15957348 TTTTGAAGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
17 6 0.29
20 8 0.38
21 7 0.33
ACGTcount: A:0.31, C:0.02, G:0.26, T:0.40
Consensus pattern (19 bp):
ATGAATATATGTTGTGATG
Found at i:15957384 original size:37 final size:37
Alignment explanation
Indices: 15957342--15957423 Score: 137
Period size: 37 Copynumber: 2.2 Consensus size: 37
15957332 TAATGTTGTG
* *
15957342 TGATGATTTTGAAGTGTGCAAGTAGGGAGTGCACACA
1 TGATGATGTTGAAGTGTGCAAGTAAGGAGTGCACACA
*
15957379 TGATGATGTTGAAGTGTGCGAGTAAGGAGTGCACACA
1 TGATGATGTTGAAGTGTGCAAGTAAGGAGTGCACACA
15957416 TGATGATG
1 TGATGATG
15957424 ATATTGCATT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.29, C:0.10, G:0.34, T:0.27
Consensus pattern (37 bp):
TGATGATGTTGAAGTGTGCAAGTAAGGAGTGCACACA
Found at i:15959440 original size:21 final size:21
Alignment explanation
Indices: 15959415--15959457 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
15959405 GCTATAAATA
*
15959415 TCATTTTCCAGTAGCTTATTC
1 TCATTTTCCAGCAGCTTATTC
* *
15959436 TCATTTTCTAGCAGCTTCTTC
1 TCATTTTCCAGCAGCTTATTC
15959457 T
1 T
15959458 TCTTCTTCCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.16, C:0.26, G:0.09, T:0.49
Consensus pattern (21 bp):
TCATTTTCCAGCAGCTTATTC
Found at i:15960331 original size:43 final size:43
Alignment explanation
Indices: 15960270--15960355 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 43
15960260 TGATAATAAG
* *
15960270 GACCCAGCTATGTGCGGTGTAGGAGTGCACAAGAGCTGATGAT
1 GACCCAACTATGTGCGGTGTAGGACTGCACAAGAGCTGATGAT
* *
15960313 GACCCAACTATGTGCGGTGTGGGACTGCACATGAGCTGATGAT
1 GACCCAACTATGTGCGGTGTAGGACTGCACAAGAGCTGATGAT
15960356 AATGATAGTG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.24, C:0.20, G:0.34, T:0.22
Consensus pattern (43 bp):
GACCCAACTATGTGCGGTGTAGGACTGCACAAGAGCTGATGAT
Found at i:15963985 original size:39 final size:40
Alignment explanation
Indices: 15963925--15964023 Score: 139
Period size: 39 Copynumber: 2.5 Consensus size: 40
15963915 ATGGACAGAA
* * * *
15963925 AGTTTCTTACTGTAGTG-AAATTCAACTTGCCAAATAGAG
1 AGTTTCTCACTGCAGCGAAAATTCAACTTGCCAAAGAGAG
*
15963964 AGTTTCTCGCTGCAGC-AAAATTCAACTTGCCAAAGAGAG
1 AGTTTCTCACTGCAGCGAAAATTCAACTTGCCAAAGAGAG
15964003 AGTTTCTCACTGCAGCGAAAA
1 AGTTTCTCACTGCAGCGAAAA
15964024 GCTCCAAAAC
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
39 48 0.92
40 4 0.08
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.27
Consensus pattern (40 bp):
AGTTTCTCACTGCAGCGAAAATTCAACTTGCCAAAGAGAG
Found at i:15964446 original size:84 final size:84
Alignment explanation
Indices: 15964343--15964509 Score: 210
Period size: 84 Copynumber: 2.0 Consensus size: 84
15964333 CTCCCATCAT
* ** * *
15964343 CATCAGCTCATATGCACTCCCACTAGCACAT-GGCTGGGTCATCATCGACTTATGCGCACTTCTA
1 CATCAACTCATATGCACTCCCACTAGCACATAATC-GGGTCAGCATCGACTTATGCGCACTCCTA
*
15964407 CTCGCACATAGCCGAGTCAG
65 CTCGAACATAGCCGAGTCAG
* * * *
15964427 CATCAACTTATATGCACTCCCACTCGCACATAATCGGGTCAGCATCGGCTTATGTGCACTCCTAC
1 CATCAACTCATATGCACTCCCACTAGCACATAATCGGGTCAGCATCGACTTATGCGCACTCCTAC
* *
15964492 TTGAACATAGCCGGGTCA
66 TCGAACATAGCCGAGTCA
15964510 ATATCATTAC
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
84 69 0.99
85 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.25
Consensus pattern (84 bp):
CATCAACTCATATGCACTCCCACTAGCACATAATCGGGTCAGCATCGACTTATGCGCACTCCTAC
TCGAACATAGCCGAGTCAG
Found at i:15964500 original size:42 final size:42
Alignment explanation
Indices: 15964355--15964509 Score: 166
Period size: 42 Copynumber: 3.7 Consensus size: 42
15964345 TCAGCTCATA
* * * * *
15964355 TGCACTCCCACTAGCACATGGCTGGGTCATCATCGACTTATG
1 TGCACTCCTACTCGCACATAGCCGGGTCAGCATCGACTTATG
* * * * *
15964397 CGCACTTCTACTCGCACATAGCCGAGTCAGCATCAACTTATA
1 TGCACTCCTACTCGCACATAGCCGGGTCAGCATCGACTTATG
* ** *
15964439 TGCACTCCCACTCGCACATAATCGGGTCAGCATCGGCTTATG
1 TGCACTCCTACTCGCACATAGCCGGGTCAGCATCGACTTATG
* *
15964481 TGCACTCCTACTTGAACATAGCCGGGTCA
1 TGCACTCCTACTCGCACATAGCCGGGTCA
15964510 ATATCATTAC
Statistics
Matches: 89, Mismatches: 24, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
42 89 1.00
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.25
Consensus pattern (42 bp):
TGCACTCCTACTCGCACATAGCCGGGTCAGCATCGACTTATG
Found at i:15969466 original size:21 final size:21
Alignment explanation
Indices: 15969424--15969466 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
15969414 GCTATAAATA
** *
15969424 TCATTTTCCAGTAGCTTATTC
1 TCATTTTCCAACAACTTATTC
*
15969445 TCATTTTCCAACAACTTCTTC
1 TCATTTTCCAACAACTTATTC
15969466 T
1 T
15969467 TGTTCTTCCT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.28, G:0.05, T:0.47
Consensus pattern (21 bp):
TCATTTTCCAACAACTTATTC
Found at i:15972273 original size:38 final size:40
Alignment explanation
Indices: 15972231--15972333 Score: 147
Period size: 38 Copynumber: 2.6 Consensus size: 40
15972221 ATAGTGCCCG
*
15972231 TGTGCACGATGTGGGGGGATGTACACGGTGGCACT-GAT-
1 TGTGCACGATGTGGGGGGATGTACACGATGGCACTGGATA
* ** *
15972269 TGTGCACGATGTGGGGGGATGCACACGATGGTGCTGGCTA
1 TGTGCACGATGTGGGGGGATGTACACGATGGCACTGGATA
15972309 TGTGCACGATGTGGGGGGATGTACA
1 TGTGCACGATGTGGGGGGATGTACA
15972334 TGAGCCGGGT
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
38 31 0.54
39 2 0.04
40 24 0.42
ACGTcount: A:0.18, C:0.16, G:0.43, T:0.23
Consensus pattern (40 bp):
TGTGCACGATGTGGGGGGATGTACACGATGGCACTGGATA
Found at i:15975483 original size:43 final size:43
Alignment explanation
Indices: 15975426--15975556 Score: 181
Period size: 43 Copynumber: 3.0 Consensus size: 43
15975416 TGATACTGAG
* * *
15975426 GACCCAGCCATGTGCGGTGTTGGAGTGCACATGAGCTAATGAT
1 GACCCAGCTATGTGCGGTGTGGGAGTGCACATGAGCTGATGAT
* * *
15975469 GACCTAGCTATGTGCAGTGTGGGAGTGCACATAAGCTGATGAT
1 GACCCAGCTATGTGCGGTGTGGGAGTGCACATGAGCTGATGAT
* * *
15975512 GACCCAACTATTTGCGGCGTGGGAGTGCACATGAGCTGATGAT
1 GACCCAGCTATGTGCGGTGTGGGAGTGCACATGAGCTGATGAT
15975555 GA
1 GA
15975557 TGATATTGCA
Statistics
Matches: 76, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 76 1.00
ACGTcount: A:0.24, C:0.19, G:0.33, T:0.24
Consensus pattern (43 bp):
GACCCAGCTATGTGCGGTGTGGGAGTGCACATGAGCTGATGAT
Found at i:15978495 original size:60 final size:59
Alignment explanation
Indices: 15978376--15978553 Score: 223
Period size: 60 Copynumber: 3.0 Consensus size: 59
15978366 AGATCATCAA
* * *
15978376 TTACTCATGGGAACTACCCACGCCACC-AGATGAATCGGGGCTTCAGGTCCCCCTTTTTAC
1 TTACTCGTGGGAACTACCCACGCCACCTATATAAATCGGGGCTTCAGGTCCCCC--TTTAC
* * *
15978436 TTACTCGTGGGAACTACCCATGCCACCATATATAAATCGAGGCTTCAGGTCACCCTTTAC
1 TTACTCGTGGGAACTACCCACGCCACC-TATATAAATCGGGGCTTCAGGTCCCCCTTTAC
* * * *
15978496 CTACTCGTGGGAACTGCCCACCCCACCTAATATAAATCGGGGCTTCAAGTCCCCCTTT
1 TTACTCGTGGGAACTACCCACGCCACCT-ATATAAATCGGGGCTTCAGGTCCCCCTTT
15978554 TTAAATCAAA
Statistics
Matches: 102, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
59 1 0.01
60 79 0.77
62 22 0.22
ACGTcount: A:0.24, C:0.33, G:0.18, T:0.25
Consensus pattern (59 bp):
TTACTCGTGGGAACTACCCACGCCACCTATATAAATCGGGGCTTCAGGTCCCCCTTTAC
Found at i:15979323 original size:16 final size:15
Alignment explanation
Indices: 15979278--15979323 Score: 51
Period size: 16 Copynumber: 3.1 Consensus size: 15
15979268 GGCACCATCG
15979278 CTTTCTCTTTCTCTT
1 CTTTCTCTTTCTCTT
* *
15979293 -TTT-TCTTCCTTTT
1 CTTTCTCTTTCTCTT
15979306 CTTATCTCTTTCTCTT
1 CTT-TCTCTTTCTCTT
15979322 CT
1 CT
15979324 CCTCCGAGAT
Statistics
Matches: 24, Mismatches: 4, Indels: 5
0.73 0.12 0.15
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 1 0.04
16 10 0.42
ACGTcount: A:0.02, C:0.30, G:0.00, T:0.67
Consensus pattern (15 bp):
CTTTCTCTTTCTCTT
Found at i:15979386 original size:19 final size:18
Alignment explanation
Indices: 15979362--15979399 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
15979352 TTTCTTATTC
* *
15979362 TTTTTCTCTGTCTTGT-T
1 TTTTTTTCTTTCTTGTCT
15979379 TTTTTTTCTTTCTTGTCT
1 TTTTTTTCTTTCTTGTCT
15979397 TTT
1 TTT
15979400 CTCTCTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.00, C:0.16, G:0.08, T:0.76
Consensus pattern (18 bp):
TTTTTTTCTTTCTTGTCT
Found at i:15979392 original size:17 final size:17
Alignment explanation
Indices: 15979348--15979407 Score: 66
Period size: 18 Copynumber: 3.4 Consensus size: 17
15979338 TTGCTCCCTC
*
15979348 TCTCTTTCTTATTCTTTT
1 TCTCTTTCTTGTT-TTTT
*
15979366 TCTCTGTCTTGTTTTTT
1 TCTCTTTCTTGTTTTTT
* *
15979383 TTTCTTTCTTGTCTTTTC
1 TCTCTTTCTTGT-TTTTT
15979401 TCTCTTT
1 TCTCTTT
15979408 TTCCTTCCCT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
17 14 0.40
18 21 0.60
ACGTcount: A:0.02, C:0.22, G:0.05, T:0.72
Consensus pattern (17 bp):
TCTCTTTCTTGTTTTTT
Found at i:15985864 original size:43 final size:44
Alignment explanation
Indices: 15985802--15985912 Score: 118
Period size: 43 Copynumber: 2.6 Consensus size: 44
15985792 ATTGACTCGA
* * ** *
15985802 CTATGTGTGAGTAAGGAGTGCGCATAAGTCGAG-GATGACCCAG
1 CTATGTGCGAGTAGGGAGTGCGCATAAACCCAGTGATGACCCAG
* *
15985845 TTATGTGCGAGTAGGGAGTGAGCA-AAACCCAGTGATGACCCAG
1 CTATGTGCGAGTAGGGAGTGCGCATAAACCCAGTGATGACCCAG
* * *
15985888 CCATGTGCGACTAGGTAGTGCGCAT
1 CTATGTGCGAGTAGGGAGTGCGCAT
15985913 GAGCTGGTGA
Statistics
Matches: 54, Mismatches: 12, Indels: 3
0.78 0.17 0.04
Matches are distributed among these distances:
42 5 0.09
43 49 0.91
ACGTcount: A:0.27, C:0.19, G:0.33, T:0.21
Consensus pattern (44 bp):
CTATGTGCGAGTAGGGAGTGCGCATAAACCCAGTGATGACCCAG
Found at i:15988092 original size:60 final size:60
Alignment explanation
Indices: 15987999--15988527 Score: 674
Period size: 60 Copynumber: 8.9 Consensus size: 60
15987989 AAACATCATC
* * * * * *
15987999 ACCTACACGTGGGAACTTCCCACGTCACCATATATAAATTAGGTCTTCAGGTCCCCATTT
1 ACCTACTCGTGGGAACTACCCACGCCACCATATATAAATCAGGGCTTCAGGTCCCCCTTT
* **
15988059 ACCTACTCGTGGGAACTACCCATGCCACCATATATAAATCAGGGCTTCAGGTCTCTCTTTTT
1 ACCTACTCGTGGGAACTACCCACGCCACCATATATAAATCAGGGCTTCAGGTC-C-CCCTTT
* * * * *
15988121 ACCTAATCATGGGAATTACCCATGCCACCATATATCAATCAGGGCTTCAGGTCCCCC-TT
1 ACCTACTCGTGGGAACTACCCACGCCACCATATATAAATCAGGGCTTCAGGTCCCCCTTT
15988180 ACCTACTCGTGGGAACTACCCACGCCACCATATATAAATCAGGGCTTCAGGTCCCCCTTT
1 ACCTACTCGTGGGAACTACCCACGCCACCATATATAAATCAGGGCTTCAGGTCCCCCTTT
** * **
15988240 ACCTACTTATGGGAACTACCCACGCCACCATATATAAATCGGGGCTTCAGGTCCCTTTTT
1 ACCTACTCGTGGGAACTACCCACGCCACCATATATAAATCAGGGCTTCAGGTCCCCCTTT
* * *
15988300 ACCTACTCAT--G--NTACCCACGCCACCATATATAAATCGGGGC-TCTAGGTCCCCCTTT
1 ACCTACTCGTGGGAACTACCCACGCCACCATATATAAATCAGGGCTTC-AGGTCCCCCTTT
** * *
15988356 ACCTACTTATGGGAACTACCCACGCCACCATATATAAATCGGGGCTTCAGGTCCCCTTTT
1 ACCTACTCGTGGGAACTACCCACGCCACCATATATAAATCAGGGCTTCAGGTCCCCCTTT
* * * **
15988416 ACTTACTCGTGGGAGCTACCCATGCCACCATATATAAATCAGGATTTCAGGTCCCCCTTT
1 ACCTACTCGTGGGAACTACCCACGCCACCATATATAAATCAGGGCTTCAGGTCCCCCTTT
** * *
15988476 ACCTACTCGTGGGAACTATTCACGCCACCATATATAAATCGGGGCTTTAGGT
1 ACCTACTCGTGGGAACTACCCACGCCACCATATATAAATCAGGGCTTCAGGT
15988528 TCTCCTTTTT
Statistics
Matches: 411, Mismatches: 49, Indels: 18
0.86 0.10 0.04
Matches are distributed among these distances:
55 2 0.00
56 48 0.12
58 2 0.00
59 54 0.13
60 248 0.60
61 4 0.01
62 53 0.13
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.27
Consensus pattern (60 bp):
ACCTACTCGTGGGAACTACCCACGCCACCATATATAAATCAGGGCTTCAGGTCCCCCTTT
Found at i:15988361 original size:116 final size:118
Alignment explanation
Indices: 15987999--15988536 Score: 670
Period size: 116 Copynumber: 4.5 Consensus size: 118
15987989 AAACATCATC
* * * * ** * *
15987999 ACCTACACGTGGGAACTTCCCACGTCACCATATATAAATTAGGTCTTCAGGTCCCCATTTACCTA
1 ACCTACTCATGGGAACTACCCACGCCACCATATATAAATCGGGGCTTCAGGTCCCCTTTTACCTA
* **
15988064 CTCGTGGGAACTACCCATGCCACCATATATAAATCAGGGCTTCAGGTCTCTCTTTTT
66 CTCGT-GG-ACTACCCACGCCACCATATATAAATCAGGGCTTCAGGTC-C-CCCTTT
* * * * * *
15988121 ACCTAATCATGGGAATTACCCATGCCACCATATATCAATCAGGGCTTCAGGTCCCC-CTTACCTA
1 ACCTACTCATGGGAACTACCCACGCCACCATATATAAATCGGGGCTTCAGGTCCCCTTTTACCTA
15988185 CTCGTGGGAACTACCCACGCCACCATATATAAATCAGGGCTTCAGGTCCCCCTTT
66 CTCGT-GG-ACTACCCACGCCACCATATATAAATCAGGGCTTCAGGTCCCCCTTT
* *
15988240 ACCTACTTATGGGAACTACCCACGCCACCATATATAAATCGGGGCTTCAGGTCCCTTTTTACCTA
1 ACCTACTCATGGGAACTACCCACGCCACCATATATAAATCGGGGCTTCAGGTCCCCTTTTACCTA
* * *
15988305 CTCAT-G-NTACCCACGCCACCATATATAAATCGGGGC-TCTAGGTCCCCCTTT
66 CTCGTGGACTACCCACGCCACCATATATAAATCAGGGCTTC-AGGTCCCCCTTT
* *
15988356 ACCTACTTATGGGAACTACCCACGCCACCATATATAAATCGGGGCTTCAGGTCCCCTTTTACTTA
1 ACCTACTCATGGGAACTACCCACGCCACCATATATAAATCGGGGCTTCAGGTCCCCTTTTACCTA
* **
15988421 CTCGTGGGAGCTACCCATGCCACCATATATAAATCAGGATTTCAGGTCCCCCTTT
66 CTCGT-GGA-CTACCCACGCCACCATATATAAATCAGGGCTTCAGGTCCCCCTTT
* ** * *
15988476 ACCTACTCGTGGGAACTATTCACGCCACCATATATAAATCGGGGCTTTAGGTTCTCCTTTT
1 ACCTACTCATGGGAACTACCCACGCCACCATATATAAATCGGGGCTTCAGG-TCCCCTTTT
15988537 TTAATCAAAA
Statistics
Matches: 369, Mismatches: 39, Indels: 17
0.87 0.09 0.04
Matches are distributed among these distances:
115 2 0.01
116 107 0.29
118 2 0.01
119 53 0.14
120 95 0.26
121 64 0.17
122 46 0.12
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.28
Consensus pattern (118 bp):
ACCTACTCATGGGAACTACCCACGCCACCATATATAAATCGGGGCTTCAGGTCCCCTTTTACCTA
CTCGTGGACTACCCACGCCACCATATATAAATCAGGGCTTCAGGTCCCCCTTT
Found at i:15988437 original size:176 final size:176
Alignment explanation
Indices: 15987999--15988527 Score: 684
Period size: 176 Copynumber: 3.0 Consensus size: 176
15987989 AAACATCATC
* * * * * *
15987999 ACCTACACGTGGGAACTTCCCACGTCACCATATATAAATTAGGTCTTCAGGTCCCCATTTACCTA
1 ACCTACTCATGGGAACTACCCACGCCACCATATATAAATCAGGGCTTCAGGTCCCCATTTACCTA
*
15988064 CTCGTGGGAACTACCCATGCCACCATATATAAATCAGGGCTTCAGGTCTCTCTTTTTACCTAATC
66 CTCGTGGGAACTACCCATGCCACCATATATAAATCAGGGCTTCAGGTC-C-CTTTTTACCTACTC
* * * *
15988129 ATGGGAATTACCCATGCCACCATATATCAATCAGGGCTTCAGGTCCCCCTT
129 AT-GG-ACTACCCACGCCACCATATATAAATCGGGGCTT-AGGTCCCCCTT
* *
15988180 ACCTACTCGTGGGAACTACCCACGCCACCATATATAAATCAGGGCTTCAGGTCCCCCTTTACCTA
1 ACCTACTCATGGGAACTACCCACGCCACCATATATAAATCAGGGCTTCAGGTCCCCATTTACCTA
** * *
15988245 CTTATGGGAACTACCCACGCCACCATATATAAATCGGGGCTTCAGGTCCCTTTTTACCTACTCAT
66 CTCGTGGGAACTACCCATGCCACCATATATAAATCAGGGCTTCAGGTCCCTTTTTACCTACTCAT
*
15988310 -G-NTACCCACGCCACCATATATAAATCGGGGCTCTAGGTCCCCCTTT
131 GGACTACCCACGCCACCATATATAAATCGGGGCT-TAGGTCCCCC-TT
* * * *
15988356 ACCTACTTATGGGAACTACCCACGCCACCATATATAAATCGGGGCTTCAGGTCCCCTTTTACTTA
1 ACCTACTCATGGGAACTACCCACGCCACCATATATAAATCAGGGCTTCAGGTCCCCATTTACCTA
* ** ** *
15988421 CTCGTGGGAGCTACCCATGCCACCATATATAAATCAGGATTTCAGGTCCCCCTTTACCTACTCGT
66 CTCGTGGGAACTACCCATGCCACCATATATAAATCAGGGCTTCAGGTCCCTTTTTACCTACTCAT
**
15988486 GGGAACTATTCACGCCACCATATATAAATCGGGGCTTTAGGT
131 -GG-ACTACCCACGCCACCATATATAAATCGGGGC-TTAGGT
15988528 TCTCCTTTTT
Statistics
Matches: 308, Mismatches: 33, Indels: 15
0.87 0.09 0.04
Matches are distributed among these distances:
175 36 0.12
176 118 0.38
177 1 0.00
178 1 0.00
179 15 0.05
180 33 0.11
181 104 0.34
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.27
Consensus pattern (176 bp):
ACCTACTCATGGGAACTACCCACGCCACCATATATAAATCAGGGCTTCAGGTCCCCATTTACCTA
CTCGTGGGAACTACCCATGCCACCATATATAAATCAGGGCTTCAGGTCCCTTTTTACCTACTCAT
GGACTACCCACGCCACCATATATAAATCGGGGCTTAGGTCCCCCTT
Found at i:15989187 original size:18 final size:18
Alignment explanation
Indices: 15989156--15989197 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
15989146 TATATTTATA
15989156 TATTATTTTATTTTA-TTT
1 TATT-TTTTATTTTACTTT
15989174 TATTTTTTATTTTTACTTT
1 TATTTTTTA-TTTTACTTT
15989193 T-TTTT
1 TATTTT
15989198 CTCCTCGGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 5 0.23
18 13 0.59
19 4 0.18
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.81
Consensus pattern (18 bp):
TATTTTTTATTTTACTTT
Found at i:15989259 original size:54 final size:56
Alignment explanation
Indices: 15989178--15989286 Score: 152
Period size: 54 Copynumber: 2.0 Consensus size: 56
15989168 TTATTTTATT
* * *
15989178 TTTTATTTTTACTTTTTTTTCTCCTCGGCACG-CTGCTGCTCCTTTTCTCTTTCTTA
1 TTTTATTTTTACTTCTTCTTCTCCTCGGCACGTC-GCTGCTCCCTTTCTCTTTCTTA
*
15989234 TTTT-TTTTT-CTTCTTCTTCTCCTCGGCACGTCGTTGCTCCCTTTCTCTTTCTT
1 TTTTATTTTTACTTCTTCTTCTCCTCGGCACGTCGCTGCTCCCTTTCTCTTTCTT
15989287 CTTCCTTCTT
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
54 38 0.79
55 6 0.12
56 4 0.08
ACGTcount: A:0.05, C:0.29, G:0.09, T:0.57
Consensus pattern (56 bp):
TTTTATTTTTACTTCTTCTTCTCCTCGGCACGTCGCTGCTCCCTTTCTCTTTCTTA
Found at i:15989299 original size:20 final size:19
Alignment explanation
Indices: 15989274--15989312 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
15989264 TCGTTGCTCC
15989274 CTTTCTCTTTCTTCTTCCTT
1 CTTTCTCTTTCTTC-TCCTT
* *
15989294 CTTTCTTTTTTTTCTCCTT
1 CTTTCTCTTTCTTCTCCTT
15989313 GACACCGCTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (19 bp):
CTTTCTCTTTCTTCTCCTT
Found at i:15989417 original size:29 final size:30
Alignment explanation
Indices: 15989340--15989427 Score: 92
Period size: 29 Copynumber: 3.0 Consensus size: 30
15989330 GCTCTCTTCC
* *
15989340 TTCTTCTTTTTCTTTTCTTT-CTTTTTCC-
1 TTCTTCTTTCTCTTTTCTTTCCTTTCTCCT
* * *
15989368 TTCTCTCCTTCTCCTTCCTTTCCTTTCTCCT
1 TTCT-TCTTTCTCTTTTCTTTCCTTTCTCCT
*
15989399 TTCTTCTTTCT-TTTTCTTTCTTTTCTCCT
1 TTCTTCTTTCTCTTTTCTTTCCTTTCTCCT
15989428 CGGCTTGGCA
Statistics
Matches: 48, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
28 4 0.08
29 27 0.56
30 13 0.27
31 4 0.08
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (30 bp):
TTCTTCTTTCTCTTTTCTTTCCTTTCTCCT
Found at i:15990384 original size:60 final size:61
Alignment explanation
Indices: 15990312--15990492 Score: 235
Period size: 60 Copynumber: 3.0 Consensus size: 61
15990302 ACATCATCAA
* * * *
15990312 CTACTCGTGGGAACTACTCATGCCACC-AGATGAATCGAGGCTTCAGGTCCCCCTTTTTAC
1 CTACTCGTGGGAACTACCCATGCCACCAATATAAATCGGGGCTTCAGGTCCCCCTTTTTAC
*
15990372 CTACTCGTGGGAACTACCCATGCCACCATATATAAATCGGGGCTTCTA-GTCGCCC--TTTAC
1 CTACTCGTGGGAACTACCCATGCCACCA-ATATAAATCGGGGCTTC-AGGTCCCCCTTTTTAC
* * *
15990432 CTACTCGTGGGAACTACCCATGCCATCCAATATAAATTGGGGCTTCTGATCCCCCTTTTTA
1 CTACTCGTGGGAACTACCCATGCCA-CCAATATAAATCGGGGCTTCAGGTCCCCCTTTTTA
15990493 AATCAAATAT
Statistics
Matches: 105, Mismatches: 9, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
60 77 0.73
61 3 0.03
62 24 0.23
63 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (61 bp):
CTACTCGTGGGAACTACCCATGCCACCAATATAAATCGGGGCTTCAGGTCCCCCTTTTTAC
Found at i:15991191 original size:14 final size:16
Alignment explanation
Indices: 15991167--15991200 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
15991157 ACCAACGTTT
15991167 CTTTTTCTTTTTC-TC
1 CTTTTTCTTTTTCTTC
15991182 CTTTTT-TTTTTCTTC
1 CTTTTTCTTTTTCTTC
15991197 CTTT
1 CTTT
15991201 CTTCCCTAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (16 bp):
CTTTTTCTTTTTCTTC
Found at i:15993984 original size:35 final size:36
Alignment explanation
Indices: 15993942--15994013 Score: 96
Period size: 35 Copynumber: 2.0 Consensus size: 36
15993932 CTGCTCCCTC
*
15993942 TCTTTCTTCTTCTTTT-TCTCTTTCTT-CTT-TCTTTT
1 TCTTTCTT-GTCTTTTCTCTCTTT-TTCCTTCTCTTTT
15993977 TCTTTCTTGTCTTTTCTCTCTTTTTCCTTCTCTTTT
1 TCTTTCTTGTCTTTTCTCTCTTTTTCCTTCTCTTTT
15994013 T
1 T
15994014 GCCGACTTGA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
34 8 0.24
35 18 0.55
36 7 0.21
ACGTcount: A:0.00, C:0.26, G:0.01, T:0.72
Consensus pattern (36 bp):
TCTTTCTTGTCTTTTCTCTCTTTTTCCTTCTCTTTT
Found at i:15993990 original size:19 final size:18
Alignment explanation
Indices: 15993940--15993984 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
15993930 TGCTGCTCCC
15993940 TCTCTTTCTTC-TTCTTTT
1 TCTCTTTCTTCTTTC-TTT
15993958 TCTCTTTCTTCTTTCTTT
1 TCTCTTTCTTCTTTCTTT
15993976 T-TCTTTCTT
1 TCTCTTTCTT
15993985 GTCTTTTCTC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
17 8 0.31
18 15 0.58
19 3 0.12
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (18 bp):
TCTCTTTCTTCTTTCTTT
Found at i:15993991 original size:14 final size:13
Alignment explanation
Indices: 15993942--15993999 Score: 50
Period size: 14 Copynumber: 4.4 Consensus size: 13
15993932 CTGCTCCCTC
15993942 TCTTTCTTCTTC-T
1 TCTTTCTT-TTCTT
15993955 T-TTTCTCTTTC-T
1 TCTTTCT-TTTCTT
15993967 TCTTTCTTTTTCTT
1 TCTTTC-TTTTCTT
*
15993981 TCTTGTCTTTTCTC
1 TCTT-TCTTTTCTT
15993995 TCTTT
1 TCTTT
15994000 TTCCTTCTCT
Statistics
Matches: 39, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
12 10 0.26
13 11 0.28
14 16 0.41
15 2 0.05
ACGTcount: A:0.00, C:0.26, G:0.02, T:0.72
Consensus pattern (13 bp):
TCTTTCTTTTCTT
Found at i:15994103 original size:19 final size:19
Alignment explanation
Indices: 15994079--15994143 Score: 71
Period size: 19 Copynumber: 3.4 Consensus size: 19
15994069 GCCAGCCCCC
*
15994079 TTTTCTTCTTCT-TTTTCTT
1 TTTTCTT-TTCTCTTCTCTT
15994098 TTTTCTTTTCTCTTCTCTT
1 TTTTCTTTTCTCTTCTCTT
*
15994117 TTGTCTATTTC-CTTCTCTT
1 TTTTCT-TTTCTCTTCTCTT
15994136 TTTCTCTT
1 TTT-TCTT
15994144 CACATGTCGG
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
18 4 0.10
19 29 0.73
20 7 0.17
ACGTcount: A:0.02, C:0.25, G:0.02, T:0.72
Consensus pattern (19 bp):
TTTTCTTTTCTCTTCTCTT
Found at i:16004378 original size:20 final size:20
Alignment explanation
Indices: 16004353--16004413 Score: 81
Period size: 20 Copynumber: 3.0 Consensus size: 20
16004343 CAGTTGGAAG
16004353 AAAGGAGAAAGGAAAGAAAA
1 AAAGGAGAAAGGAAAGAAAA
*
16004373 AAAGGATAAAGGAGAA-AAAA
1 AAAGGAGAAAGGA-AAGAAAA
16004393 AAAGAGAGAAAGG-AAGAAAA
1 AAAG-GAGAAAGGAAAGAAAA
16004413 A
1 A
16004414 GCTTGGTTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
19 2 0.06
20 25 0.69
21 9 0.25
ACGTcount: A:0.70, C:0.00, G:0.28, T:0.02
Consensus pattern (20 bp):
AAAGGAGAAAGGAAAGAAAA
Found at i:16013163 original size:39 final size:41
Alignment explanation
Indices: 16013096--16013193 Score: 132
Period size: 41 Copynumber: 2.5 Consensus size: 41
16013086 GATAGTGCAC
* *
16013096 ATGTGCACGATGT-GGGGGGATGTACACGAT-G-GCACTGAT
1 ATGTGCACGATGTGGGGGGGATGCACACGATGGTGC-CGGAT
*
16013135 -TGTGCACGATGTGGGGGGGATGCACACGATGGTGCCGGCT
1 ATGTGCACGATGTGGGGGGGATGCACACGATGGTGCCGGAT
16013175 ATGTGCACGATGTGGGGGG
1 ATGTGCACGATGTGGGGGG
16013194 ATGTACATGA
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
38 12 0.23
39 16 0.31
40 4 0.08
41 20 0.38
ACGTcount: A:0.18, C:0.16, G:0.44, T:0.21
Consensus pattern (41 bp):
ATGTGCACGATGTGGGGGGGATGCACACGATGGTGCCGGAT
Found at i:16013710 original size:60 final size:60
Alignment explanation
Indices: 16013568--16013713 Score: 168
Period size: 60 Copynumber: 2.4 Consensus size: 60
16013558 AAATACATTC
* * *
16013568 TCGCTGCAGCGATAAACTTTCTGTTTCTGGGTTGCAATTTCGCAGCAACGAGATTGAATT
1 TCGCTACAGCGAAAAACTTTCTGTTTCTGGGTTACAATTTCGCAGCAACGAGATTGAATT
** * * * *
16013628 TCGCTACAGCGAGGAACATTCTGTTTCTGGGTTACAATTTTGCTGCAGCGAGATTGAATCT
1 TCGCTACAGCGAAAAACTTTCTGTTTCTGGGTTACAATTTCGCAGCAACGAGATTGAAT-T
* **
16013689 T-GCTGCATTGAAAAACTTTCTGTTT
1 TCGCTACAGCGAAAAACTTTCTGTTT
16013714 TGGTCTCCTA
Statistics
Matches: 71, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
60 69 0.97
61 2 0.03
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.35
Consensus pattern (60 bp):
TCGCTACAGCGAAAAACTTTCTGTTTCTGGGTTACAATTTCGCAGCAACGAGATTGAATT
Found at i:16016931 original size:19 final size:19
Alignment explanation
Indices: 16016903--16016940 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
16016893 CCATTTAATT
*
16016903 TATTGCAGTATGATTTGAG
1 TATTGCAGTATAATTTGAG
*
16016922 TATTGGAGTATAATTTGAG
1 TATTGCAGTATAATTTGAG
16016941 GGTTTGGCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.29, C:0.03, G:0.26, T:0.42
Consensus pattern (19 bp):
TATTGCAGTATAATTTGAG
Found at i:16017196 original size:28 final size:28
Alignment explanation
Indices: 16017121--16017197 Score: 127
Period size: 28 Copynumber: 2.8 Consensus size: 28
16017111 TTCAGTTTTT
* * *
16017121 GGGGCAAAAATGTAATTTTACCACCTCG
1 GGGGTAAAACTGTAATTTTGCCACCTCG
16017149 GGGGTAAAACTGTAATTTTGCCACCTCG
1 GGGGTAAAACTGTAATTTTGCCACCTCG
16017177 GGGGTAAAACTGTAATTTTGC
1 GGGGTAAAACTGTAATTTTGC
16017198 ACCCCCAGAG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 46 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (28 bp):
GGGGTAAAACTGTAATTTTGCCACCTCG
Found at i:16018364 original size:13 final size:13
Alignment explanation
Indices: 16018346--16018370 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16018336 AGAGAAATTG
16018346 TGATTTTATAAAA
1 TGATTTTATAAAA
16018359 TGATTTTATAAA
1 TGATTTTATAAA
16018371 TTTTCTGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:16022884 original size:26 final size:26
Alignment explanation
Indices: 16022855--16022915 Score: 113
Period size: 26 Copynumber: 2.3 Consensus size: 26
16022845 ACCATATACC
16022855 CATCATCATCATGCACACCATCCCAT
1 CATCATCATCATGCACACCATCCCAT
*
16022881 CATCATCATCATGCACACTATCCCAT
1 CATCATCATCATGCACACCATCCCAT
16022907 CATCATCAT
1 CATCATCAT
16022916 TCCCAGCTCA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.31, C:0.39, G:0.03, T:0.26
Consensus pattern (26 bp):
CATCATCATCATGCACACCATCCCAT
Found at i:16022973 original size:43 final size:43
Alignment explanation
Indices: 16022925--16023030 Score: 131
Period size: 43 Copynumber: 2.5 Consensus size: 43
16022915 TTCCCAGCTC
* ** * *
16022925 ATGCGCACTCCTTACTCGCACATGGCTAGGTCATCACCGGGTT
1 ATGCGCACTCCCTACTCGCACATAACTAGGTCATCACCAGATT
* * **
16022968 ATGCGCACTCCCTACTCACACATAACTGGGTCATCATTAGATT
1 ATGCGCACTCCCTACTCGCACATAACTAGGTCATCACCAGATT
16023011 ATGCGCACTCCCTACTCGCA
1 ATGCGCACTCCCTACTCGCA
16023031 TATAGCCGAG
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.23, C:0.34, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCGCACTCCCTACTCGCACATAACTAGGTCATCACCAGATT
Found at i:16029852 original size:58 final size:57
Alignment explanation
Indices: 16029762--16029881 Score: 186
Period size: 58 Copynumber: 2.1 Consensus size: 57
16029752 CATAATCATC
* * *
16029762 CAAAGTAGTTTGCATGTGTTAGTTTTATTTTATGCAATTTAATAAATGATATGCAATG
1 CAAAGTAGTATGCATGTGATAGATTTATTTTATGCAATTTAATAAATGATATGC-ATG
* *
16029820 CAAAGTAGTATGCGTGTGATAGATTTATTTTATGCAATTTAATAAATGCTATGCATG
1 CAAAGTAGTATGCATGTGATAGATTTATTTTATGCAATTTAATAAATGATATGCATG
16029877 CAAAG
1 CAAAG
16029882 ATGAGACCCT
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
57 8 0.14
58 49 0.86
ACGTcount: A:0.34, C:0.08, G:0.18, T:0.39
Consensus pattern (57 bp):
CAAAGTAGTATGCATGTGATAGATTTATTTTATGCAATTTAATAAATGATATGCATG
Found at i:16032596 original size:62 final size:61
Alignment explanation
Indices: 16032435--16032615 Score: 188
Period size: 62 Copynumber: 2.9 Consensus size: 61
16032425 GATTTCCAAA
* * * * * **
16032435 CAAGATAGAGAGTTTCTCACTGCGATGAGAATGAATTTGGTTGTAGCGAGAACAGTGGTTCC
1 CAAGACAGAAAGTTTCTCACTTCGATGAAAATGAATTTGGCTGT-GCGAGAACAGTGACTCC
* *
16032497 CAAGTCAGAAAGTTTCT--C-TCTATGGCAAGAATGAATTTGGCTGTGTCGAGAACAGTGACTCC
1 CAAGACAGAAAGTTTCTCACTTCGAT-G-AA-AATGAATTTGGCTGTG-CGAGAACAGTGACTCC
* *
16032559 TAAGACAGAAAGTTTCTCACTTCGATGAAAATCAATTTGGCTGTGGCGAGAACAGTG
1 CAAGACAGAAAGTTTCTCACTTCGATGAAAATGAATTTGGCTGT-GCGAGAACAGTG
16032616 CAAATGGAGT
Statistics
Matches: 98, Mismatches: 13, Indels: 16
0.77 0.10 0.13
Matches are distributed among these distances:
59 3 0.03
60 2 0.02
61 2 0.02
62 82 0.84
63 3 0.03
64 2 0.02
65 4 0.04
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (61 bp):
CAAGACAGAAAGTTTCTCACTTCGATGAAAATGAATTTGGCTGTGCGAGAACAGTGACTCC
Found at i:16032952 original size:38 final size:34
Alignment explanation
Indices: 16032901--16032998 Score: 106
Period size: 35 Copynumber: 2.7 Consensus size: 34
16032891 TCAACCCAGC
* *
16032901 TCATGTACACTCCCACACGTACATAACTAATACCGTCA
1 TCATGTGCACTCCCACACGTACACAAC-AATA---TCA
* *
16032939 TCATGTGCACTCCCACACCGCACACGACAATATCA
1 TCATGTGCACTCCCACA-CGTACACAACAATATCA
16032974 TCATGTGCACTCCCACAACGTACAC
1 TCATGTGCACTCCCAC-ACGTACAC
16032999 GCATGGTTGT
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
35 25 0.47
36 1 0.02
38 20 0.38
39 7 0.13
ACGTcount: A:0.32, C:0.38, G:0.10, T:0.20
Consensus pattern (34 bp):
TCATGTGCACTCCCACACGTACACAACAATATCA
Found at i:16037402 original size:14 final size:14
Alignment explanation
Indices: 16037383--16037409 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
16037373 CAAAATTTAT
16037383 TAATTAACTAAAAC
1 TAATTAACTAAAAC
16037397 TAATTAACTAAAA
1 TAATTAACTAAAA
16037410 TTAAAACCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.11, G:0.00, T:0.30
Consensus pattern (14 bp):
TAATTAACTAAAAC
Found at i:16037416 original size:20 final size:19
Alignment explanation
Indices: 16037391--16037441 Score: 61
Period size: 18 Copynumber: 2.7 Consensus size: 19
16037381 ATTAATTAAC
16037391 TAAAACTAATTAACTAAAAT
1 TAAAACTAA-TAACTAAAAT
*
16037411 TAAAACCAATAA-TAAAAT
1 TAAAACTAATAACTAAAAT
*
16037429 CAAAA-TAATAACT
1 TAAAACTAATAACT
16037442 TGAAAAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 5 0.19
18 11 0.41
19 3 0.11
20 8 0.30
ACGTcount: A:0.63, C:0.12, G:0.00, T:0.25
Consensus pattern (19 bp):
TAAAACTAATAACTAAAAT
Found at i:16038533 original size:20 final size:20
Alignment explanation
Indices: 16038508--16038550 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
16038498 AATAATAAAC
16038508 AAATTAAAAGAAATAACATA
1 AAATTAAAAGAAATAACATA
* * *
16038528 AAATTAAAATAACTAACTTA
1 AAATTAAAAGAAATAACATA
16038548 AAA
1 AAA
16038551 GTAACCTAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.67, C:0.07, G:0.02, T:0.23
Consensus pattern (20 bp):
AAATTAAAAGAAATAACATA
Found at i:16047090 original size:51 final size:51
Alignment explanation
Indices: 16047014--16047111 Score: 160
Period size: 51 Copynumber: 1.9 Consensus size: 51
16047004 AACATGAAGT
* * *
16047014 CATAAAACCATGAACCAATAGCCACATTGTTCTTCCTAACTATTTCCTAAC
1 CATAAAAACATAAACCAATAGCCACATTGTTCTTACTAACTATTTCCTAAC
*
16047065 CATAAAAACATAAACCAATAGCCACATTGTTTTTACTAACTATTTCC
1 CATAAAAACATAAACCAATAGCCACATTGTTCTTACTAACTATTTCC
16047112 AACTCTTTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 43 1.00
ACGTcount: A:0.38, C:0.27, G:0.05, T:0.31
Consensus pattern (51 bp):
CATAAAAACATAAACCAATAGCCACATTGTTCTTACTAACTATTTCCTAAC
Found at i:16060129 original size:18 final size:18
Alignment explanation
Indices: 16060106--16060142 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
16060096 AAGGGGGAAG
*
16060106 AAATTGAAATTTTTAGTT
1 AAATTGAAAGTTTTAGTT
*
16060124 AAATTGATAGTTTTAGTT
1 AAATTGAAAGTTTTAGTT
16060142 A
1 A
16060143 GTTATATGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.14, T:0.49
Consensus pattern (18 bp):
AAATTGAAAGTTTTAGTT
Found at i:16063242 original size:13 final size:13
Alignment explanation
Indices: 16063224--16063248 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16063214 TTCCAGAAAA
16063224 TTTATAAAATCAT
1 TTTATAAAATCAT
16063237 TTTATAAAATCA
1 TTTATAAAATCA
16063249 CAATTTCTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTATAAAATCAT
Found at i:16064456 original size:28 final size:30
Alignment explanation
Indices: 16064398--16064457 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
16064388 TTTTTGAAAT
*
16064398 TTACACTTTTGCCCCTATAAAAGTCAAAAA
1 TTACACTTTTGCCCCTATAAAACTCAAAAA
* *
16064428 TTACATTTTTGCCCC-A-AAAACTGAAAAA
1 TTACACTTTTGCCCCTATAAAACTCAAAAA
16064456 TT
1 TT
16064458 GCCCATAAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 12 0.44
29 1 0.04
30 14 0.52
ACGTcount: A:0.40, C:0.22, G:0.07, T:0.32
Consensus pattern (30 bp):
TTACACTTTTGCCCCTATAAAACTCAAAAA
Found at i:16064647 original size:19 final size:19
Alignment explanation
Indices: 16064623--16064660 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
16064613 CTGCCAAACC
*
16064623 CTCAAATTATACTCCAATA
1 CTCAAATCATACTCCAATA
16064642 CTCAAATCATACTCCAATA
1 CTCAAATCATACTCCAATA
16064661 AGTTAAATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.29, G:0.00, T:0.29
Consensus pattern (19 bp):
CTCAAATCATACTCCAATA
Found at i:16067747 original size:20 final size:20
Alignment explanation
Indices: 16067722--16067761 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
16067712 CTATAAATAT
16067722 CTCATTTCTCC-AGCAGCTTC
1 CTCATTT-TCCTAGCAGCTTC
16067742 CTCATTTTCCTAGCAGCTTC
1 CTCATTTTCCTAGCAGCTTC
16067762 TTCTTCTTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 3 0.16
20 16 0.84
ACGTcount: A:0.15, C:0.38, G:0.10, T:0.38
Consensus pattern (20 bp):
CTCATTTTCCTAGCAGCTTC
Found at i:16068673 original size:40 final size:37
Alignment explanation
Indices: 16068590--16068671 Score: 121
Period size: 37 Copynumber: 2.2 Consensus size: 37
16068580 TAATGTTGTG
16068590 TGATGATGTTGAAGCGTGCAAGTAAGGAGTGCACACA
1 TGATGATGTTGAAGCGTGCAAGTAAGGAGTGCACACA
* **
16068627 TGATGATGTTGAAGTGTGTGAGT-AGAGAGTGCACACA
1 TGATGATGTTGAAGCGTGCAAGTAAG-GAGTGCACACA
16068664 TGATGATG
1 TGATGATG
16068672 ATATTGCATT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
36 2 0.05
37 39 0.95
ACGTcount: A:0.30, C:0.10, G:0.34, T:0.26
Consensus pattern (37 bp):
TGATGATGTTGAAGCGTGCAAGTAAGGAGTGCACACA
Found at i:16071001 original size:37 final size:37
Alignment explanation
Indices: 16070959--16071077 Score: 134
Period size: 37 Copynumber: 3.2 Consensus size: 37
16070949 TAATGTTGTG
* *
16070959 TGATGATGTTGAGGTATGCGAGTAAGGAGTGCACACA
1 TGATGATGTTGAGGTGTGAGAGTAAGGAGTGCACACA
*
16070996 TGATGATGTT-AGAGTGTGAGAGTAAGGAGTGCAGACA
1 TGATGATGTTGAG-GTGTGAGAGTAAGGAGTGCACACA
* * * *
16071033 TGATGATGCTGAAGTGTGTGAGT-AGGAAGTGCACAAA
1 TGATGATGTTGAGGTGTGAGAGTAAGG-AGTGCACACA
*
16071070 CGATGATG
1 TGATGATG
16071078 ATATTCCGTT
Statistics
Matches: 70, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
36 5 0.07
37 64 0.91
38 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.36, T:0.24
Consensus pattern (37 bp):
TGATGATGTTGAGGTGTGAGAGTAAGGAGTGCACACA
Found at i:16076250 original size:64 final size:64
Alignment explanation
Indices: 16076039--16076241 Score: 311
Period size: 64 Copynumber: 3.2 Consensus size: 64
16076029 AATTAATGCA
* * * *
16076039 ACCGTGCATGTGCGGAGTGGGAAGTGC-AATGCCAGTTGAATGACAAAGGATGTGATAATTA-T
1 ACCGTGCATGTGCGGAGTGGGAAGTGCAAATGCCGGTTTAATGATAAAGGTTGTGATAATTACT
* * *
16076101 GACCGTGCATGTGTGGAGTGGGAAGTGCAAATGCCGATTTAATGATAAAGGTTGTGATAATTACG
1 -ACCGTGCATGTGCGGAGTGGGAAGTGCAAATGCCGGTTTAATGATAAAGGTTGTGATAATTACT
*
16076166 ACTGTGCATGTGCGGAGTGGGAAGTGCAAATGCCGGTTTAATGATAAAGGTTGTGATAATTACT
1 ACCGTGCATGTGCGGAGTGGGAAGTGCAAATGCCGGTTTAATGATAAAGGTTGTGATAATTACT
16076230 ACCGTGCATGTG
1 ACCGTGCATGTG
16076242 TAAAGTGGGG
Statistics
Matches: 126, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
63 26 0.21
64 100 0.79
ACGTcount: A:0.29, C:0.12, G:0.32, T:0.27
Consensus pattern (64 bp):
ACCGTGCATGTGCGGAGTGGGAAGTGCAAATGCCGGTTTAATGATAAAGGTTGTGATAATTACT
Found at i:16076833 original size:31 final size:30
Alignment explanation
Indices: 16076795--16076855 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 30
16076785 GCATCTCTTG
*
16076795 GGTATGTGTTTGGCATTCGATAGTAATCCC
1 GGTATGTGTCTGGCATTCGATAGTAATCCC
16076825 NGGTATGTGTCTGGCATTCGATAGTAATCCC
1 -GGTATGTGTCTGGCATTCGATAGTAATCCC
16076856 TTTTATTGTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.20, C:0.18, G:0.26, T:0.34
Consensus pattern (30 bp):
GGTATGTGTCTGGCATTCGATAGTAATCCC
Found at i:16077344 original size:20 final size:19
Alignment explanation
Indices: 16077315--16077354 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
16077305 TGTGTGTGGT
16077315 GTTATACAT-ATATGGTAAA
1 GTTATACATAATATGG-AAA
16077334 GTTATTACATAATATGGAAA
1 GTTA-TACATAATATGGAAA
16077354 G
1 G
16077355 ATTGTCCTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 9 0.47
21 6 0.32
ACGTcount: A:0.42, C:0.05, G:0.17, T:0.35
Consensus pattern (19 bp):
GTTATACATAATATGGAAA
Found at i:16081385 original size:37 final size:37
Alignment explanation
Indices: 16081343--16081498 Score: 208
Period size: 37 Copynumber: 4.2 Consensus size: 37
16081333 TAATGTTGTG
16081343 TGATGATGTTGAAGTGTGCAAGTAAGGAGTGCACACA
1 TGATGATGTTGAAGTGTGCAAGTAAGGAGTGCACACA
*
16081380 TGATGATGTTGAAGTGTGAAAGTAAGGAGTGCACACA
1 TGATGATGTTGAAGTGTGCAAGTAAGGAGTGCACACA
* * *
16081417 TGATGATGTT-AGAGTGTGCGAGTACGGAGTACACACA
1 TGATGATGTTGA-AGTGTGCAAGTAAGGAGTGCACACA
* * * *
16081454 TGATGATGTTAAAGTGTACGAGTACA-TAGTGCACACA
1 TGATGATGTTGAAGTGTGCAAGTA-AGGAGTGCACACA
16081491 TGATGATG
1 TGATGATG
16081499 ATATTGCATT
Statistics
Matches: 107, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
36 1 0.01
37 105 0.98
38 1 0.01
ACGTcount: A:0.33, C:0.11, G:0.31, T:0.26
Consensus pattern (37 bp):
TGATGATGTTGAAGTGTGCAAGTAAGGAGTGCACACA
Found at i:16081797 original size:21 final size:21
Alignment explanation
Indices: 16081773--16081823 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
16081763 ACTGGCCTGG
*
16081773 TTCTCGCTGTAACGAGATTTA
1 TTCTCGCTGTAACAAGATTTA
*
16081794 TTCTCGCTGTAGCAAGATTTA
1 TTCTCGCTGTAACAAGATTTA
16081815 TTCTCGCTG
1 TTCTCGCTG
16081824 CAGTGAGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.39
Consensus pattern (21 bp):
TTCTCGCTGTAACAAGATTTA
Done.