Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39371879
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2227820 characters in sequence are not A, C, G, or T
File 54 of 103
Found at i:20557319 original size:2 final size:2
Alignment explanation
Indices: 20557312--20557344 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
20557302 ACATACATAC
20557312 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
20557345 NGTATAGACA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:20558400 original size:15 final size:15
Alignment explanation
Indices: 20558380--20558442 Score: 51
Period size: 15 Copynumber: 4.2 Consensus size: 15
20558370 TTCTCTTTAG
20558380 GTTTATATATTATAA
1 GTTTATATATTATAA
* *
20558395 GTTTATATA-AACAAA
1 GTTTATATATTA-TAA
20558410 GTTATATATATTATAA
1 GTT-TATATATTATAA
*
20558426 -TTAATA-ATTTATAA
1 GTTTATATA-TTATAA
20558440 GTT
1 GTT
20558443 ATAATTTTGT
Statistics
Matches: 38, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
13 1 0.03
14 10 0.26
15 18 0.47
16 8 0.21
17 1 0.03
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (15 bp):
GTTTATATATTATAA
Found at i:20558439 original size:14 final size:14
Alignment explanation
Indices: 20558408--20558449 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
20558398 TATATAAACA
20558408 AAGTTATATATATTAT
1 AAGTTATA-AT-TTAT
20558424 AA-TTAATAATTTAT
1 AAGTT-ATAATTTAT
20558438 AAGTTATAATTT
1 AAGTTATAATTT
20558450 TGTAATGTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
14 13 0.54
15 6 0.25
16 5 0.21
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (14 bp):
AAGTTATAATTTAT
Found at i:20560956 original size:22 final size:22
Alignment explanation
Indices: 20560925--20560994 Score: 63
Period size: 21 Copynumber: 3.2 Consensus size: 22
20560915 TGAGTTGTGC
*
20560925 ATTGCGTGACAAGGTTTG-AGGA
1 ATTGCTTGACAA-GTTTGTAGGA
* *
20560947 ATTGCTTGACTAGTTTGTAGGC
1 ATTGCTTGACAAGTTTGTAGGA
* * *
20560969 ATTG-TTGACTAGTTTTTAGTA
1 ATTGCTTGACAAGTTTGTAGGA
20560990 ATTGC
1 ATTGC
20560995 GTTGCTCTAT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
21 23 0.57
22 17 0.43
ACGTcount: A:0.23, C:0.10, G:0.27, T:0.40
Consensus pattern (22 bp):
ATTGCTTGACAAGTTTGTAGGA
Found at i:20560993 original size:21 final size:22
Alignment explanation
Indices: 20560938--20560994 Score: 73
Period size: 21 Copynumber: 2.7 Consensus size: 22
20560928 GCGTGACAAG
20560938 GTTTG-AGGAATTGCTTGACTA
1 GTTTGTAGGAATTGCTTGACTA
*
20560959 GTTTGTAGGCATTG-TTGACTA
1 GTTTGTAGGAATTGCTTGACTA
* *
20560980 GTTTTTAGTAATTGC
1 GTTTGTAGGAATTGC
20560995 GTTGCTCTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 23 0.77
22 7 0.23
ACGTcount: A:0.21, C:0.09, G:0.26, T:0.44
Consensus pattern (22 bp):
GTTTGTAGGAATTGCTTGACTA
Found at i:20567131 original size:28 final size:29
Alignment explanation
Indices: 20567090--20567154 Score: 69
Period size: 30 Copynumber: 2.2 Consensus size: 29
20567080 GTCTATGGGC
*
20567090 AATTTTTCAATTTT-TGGGGCAAAAATGT
1 AATTTTTCAATTTTAAGGGGCAAAAATGT
* * *
20567118 AATTTTTGACTTTTACAGGGGCAAAAGTGT
1 AATTTTTCAATTTTA-AGGGGCAAAAATGT
*
20567148 AAATTTT
1 AATTTTT
20567155 AAAAATTACT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
28 12 0.40
30 18 0.60
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (29 bp):
AATTTTTCAATTTTAAGGGGCAAAAATGT
Found at i:20573984 original size:19 final size:19
Alignment explanation
Indices: 20573960--20573997 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
20573950 CCATTTGACT
*
20573960 TATTGGAGTATGATTTGAG
1 TATTGGAGTATAATTTGAG
20573979 TATTGGAGTATAATTTGAG
1 TATTGGAGTATAATTTGAG
20573998 GGTTTGGCAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.42
Consensus pattern (19 bp):
TATTGGAGTATAATTTGAG
Found at i:20585539 original size:22 final size:21
Alignment explanation
Indices: 20585510--20585550 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
20585500 GGACAAGTGC
*
20585510 ATGGTGAAAATTTGAAAACAA
1 ATGGTGAAAATTTAAAAACAA
*
20585531 ATGGATGAAATTTTAAAAAC
1 ATGG-TGAAAATTTAAAAAC
20585551 GATGCAATGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.51, C:0.05, G:0.17, T:0.27
Consensus pattern (21 bp):
ATGGTGAAAATTTAAAAACAA
Found at i:20594505 original size:2 final size:2
Alignment explanation
Indices: 20594498--20594551 Score: 92
Period size: 2 Copynumber: 27.0 Consensus size: 2
20594488 TGCAACAAGG
20594498 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT ANT -T
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT
20594540 AT AT AT AT AT AT
1 AT AT AT AT AT AT
20594552 GTTAGAGGTA
Statistics
Matches: 50, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.02
2 48 0.96
3 1 0.02
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:20596924 original size:2 final size:2
Alignment explanation
Indices: 20596914--20596952 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
20596904 CATAACACAC
* * *
20596914 AT AT CT AT AT AT GT AT AT GT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
20596953 CCCATTATCA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.49
Consensus pattern (2 bp):
AT
Found at i:20603456 original size:42 final size:42
Alignment explanation
Indices: 20603396--20603509 Score: 158
Period size: 42 Copynumber: 2.7 Consensus size: 42
20603386 CAACTCATAT
* *
20603396 GCACTCCCCACT-AGCACATGGTCGGGTCAGCATCGGCTTATGC
1 GCACT-CCCACTCA-CACATAGTCGGGTCAACATCGGCTTATGC
*
20603439 GCACTCCCACTCACACATAGCCGGGTCAACATCGGCTTATGC
1 GCACTCCCACTCACACATAGTCGGGTCAACATCGGCTTATGC
* *
20603481 GCACTCCTACTCGCACATAGTCGGGTCAA
1 GCACTCCCACTCACACATAGTCGGGTCAA
20603510 TATCATTACA
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
42 58 0.91
43 6 0.09
ACGTcount: A:0.22, C:0.36, G:0.22, T:0.20
Consensus pattern (42 bp):
GCACTCCCACTCACACATAGTCGGGTCAACATCGGCTTATGC
Found at i:20605990 original size:21 final size:21
Alignment explanation
Indices: 20605973--20606017 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
20605963 AATATGTTTC
20605973 CAATGTATCGATACATGTTCA
1 CAATGTATCGATACATGTTCA
* *
20605994 TAATGTATCGATACATGATCA
1 CAATGTATCGATACATGTTCA
20606015 CAA
1 CAA
20606018 AACATGAGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.31
Consensus pattern (21 bp):
CAATGTATCGATACATGTTCA
Found at i:20614702 original size:20 final size:20
Alignment explanation
Indices: 20614677--20614716 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
20614667 AACATTCTTC
* *
20614677 AACTTTAATCGATTGAAATA
1 AACTTTAATAGATTAAAATA
20614697 AACTTTAATAGATTAAAATA
1 AACTTTAATAGATTAAAATA
20614717 TCTTCGAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.35
Consensus pattern (20 bp):
AACTTTAATAGATTAAAATA
Found at i:20616728 original size:36 final size:36
Alignment explanation
Indices: 20616636--20616728 Score: 118
Period size: 36 Copynumber: 2.6 Consensus size: 36
20616626 TTCTAGGACT
* *
20616636 TGGGCTATCATTCATTCACACTCACATCACAATAGG
1 TGGGCTATCATTCATCCACATTCACATCACAATAGG
* *
20616672 TGGGCTA-CTAATCATCCACATTCACATCATAATAGG
1 TGGGCTATC-ATTCATCCACATTCACATCACAATAGG
20616708 TGGG-TATGCATTCATCCACAT
1 TGGGCTAT-CATTCATCCACAT
20616729 AGGCAATAAC
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
35 3 0.06
36 45 0.92
37 1 0.02
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (36 bp):
TGGGCTATCATTCATCCACATTCACATCACAATAGG
Found at i:20620384 original size:34 final size:34
Alignment explanation
Indices: 20620346--20620418 Score: 87
Period size: 33 Copynumber: 2.2 Consensus size: 34
20620336 GGCTGCTGAT
*
20620346 TTTTGAAGG-GAAAATAGAGCAGCTTAGCTACTAA
1 TTTTGAAGGAG-AAATAGAGCAGCTTAACTACTAA
** *
20620380 TTTTG-AGGAGAAATAGAGTTGCTTAACTACTGA
1 TTTTGAAGGAGAAATAGAGCAGCTTAACTACTAA
20620413 TTTTGA
1 TTTTGA
20620419 TGTGGATATG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
33 27 0.82
34 6 0.18
ACGTcount: A:0.34, C:0.10, G:0.23, T:0.33
Consensus pattern (34 bp):
TTTTGAAGGAGAAATAGAGCAGCTTAACTACTAA
Found at i:20620616 original size:5 final size:5
Alignment explanation
Indices: 20620577--20620649 Score: 85
Period size: 5 Copynumber: 14.2 Consensus size: 5
20620567 TCGGCTGGAG
* *
20620577 AGAAA AGGAAG AGAAA GAGAGAA AGAAA A-AAA AGAAA AGAAA AAAAA
1 AGAAA A-GAAA AGAAA -AGA-AA AGAAA AGAAA AGAAA AGAAA AGAAA
*
20620624 AGAAA AGAAG AGAAA AGAAA AGAAA A
1 AGAAA AGAAA AGAAA AGAAA AGAAA A
20620650 ATATATATAT
Statistics
Matches: 58, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
4 4 0.07
5 42 0.72
6 10 0.17
7 2 0.03
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:20620720 original size:25 final size:25
Alignment explanation
Indices: 20620666--20620722 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
20620656 ATATGCATAT
*
20620666 AAATGGACATGGCCCAATAAGGAAAG
1 AAATGGGCATGGCCCAATAA-GAAAG
20620692 -AATGGGCATGGCCCAATTAA-AAAG
1 AAATGGGCATGGCCCAA-TAAGAAAG
20620716 AAATGGG
1 AAATGGG
20620723 AGAAGGCCCT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
24 4 0.14
25 21 0.75
26 3 0.11
ACGTcount: A:0.44, C:0.14, G:0.28, T:0.14
Consensus pattern (25 bp):
AAATGGGCATGGCCCAATAAGAAAG
Found at i:20627127 original size:16 final size:18
Alignment explanation
Indices: 20627096--20627134 Score: 55
Period size: 16 Copynumber: 2.3 Consensus size: 18
20627086 AGGGAGAATA
20627096 AAAGAGAAACGAAAGAAC
1 AAAGAGAAACGAAAGAAC
*
20627114 AAAG-GAAA-GAAAGAAG
1 AAAGAGAAACGAAAGAAC
20627130 AAAGA
1 AAAGA
20627135 AGTAGCCGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
16 11 0.58
17 4 0.21
18 4 0.21
ACGTcount: A:0.69, C:0.05, G:0.26, T:0.00
Consensus pattern (18 bp):
AAAGAGAAACGAAAGAAC
Found at i:20627710 original size:15 final size:15
Alignment explanation
Indices: 20627675--20627725 Score: 59
Period size: 15 Copynumber: 3.4 Consensus size: 15
20627665 AAGAAAAGTT
20627675 AAGAAAATAA-ATGAA
1 AAGAAAATAAGAT-AA
*
20627690 ACGAAAATAAGATAA
1 AAGAAAATAAGATAA
* *
20627705 AAGAAAAGAAGAGAA
1 AAGAAAATAAGATAA
20627720 AAGAAA
1 AAGAAA
20627726 GAAAAATATA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
15 29 0.94
16 2 0.06
ACGTcount: A:0.73, C:0.02, G:0.18, T:0.08
Consensus pattern (15 bp):
AAGAAAATAAGATAA
Found at i:20627801 original size:25 final size:25
Alignment explanation
Indices: 20627745--20627803 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
20627735 ATATATGCAT
*
20627745 ATAAATGGACATGGCCCAATAAGGAA
1 ATAAATGGGCATGGCCCAATAA-GAA
20627771 AT-AATGGGCATGGCCCAATTAA-AA
1 ATAAATGGGCATGGCCCAA-TAAGAA
20627795 ATAAATGGG
1 ATAAATGGG
20627804 AGAAGTCCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
24 4 0.13
25 21 0.70
26 5 0.17
ACGTcount: A:0.44, C:0.14, G:0.24, T:0.19
Consensus pattern (25 bp):
ATAAATGGGCATGGCCCAATAAGAA
Found at i:20630928 original size:19 final size:19
Alignment explanation
Indices: 20630888--20630929 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
20630878 AGACCTAAGG
* *
20630888 AATAAATGAATGATGCTAA
1 AATAAATGAATGAAGATAA
20630907 AATAAATGAA-GAAGATAGA
1 AATAAATGAATGAAGATA-A
20630926 AATA
1 AATA
20630930 CTGATAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.60, C:0.02, G:0.17, T:0.21
Consensus pattern (19 bp):
AATAAATGAATGAAGATAA
Found at i:20631880 original size:43 final size:43
Alignment explanation
Indices: 20631812--20631997 Score: 255
Period size: 43 Copynumber: 4.3 Consensus size: 43
20631802 TTGTGTGATA
* * * * *
20631812 ATGATGACCCAGCTACGTGCGGTGTAAGAATGCACATGAGTTG
1 ATGATGACCCAGCTATGTGCAGTGTAGGAGTGCACATGAGCTG
* *
20631855 ATGATGACTCAGCTATGTGCAGTGTAGGAGTGCACATGAGTTG
1 ATGATGACCCAGCTATGTGCAGTGTAGGAGTGCACATGAGCTG
* *
20631898 ATGATGACCCAGCTATGTGTAGTGTAGGAGTGCACGTGAGCTG
1 ATGATGACCCAGCTATGTGCAGTGTAGGAGTGCACATGAGCTG
* * *
20631941 ATGATGACCTAGCCATGTGCAGTGTAGGAGTGCACATGAACTG
1 ATGATGACCCAGCTATGTGCAGTGTAGGAGTGCACATGAGCTG
*
20631984 ATGATGACCTAGCT
1 ATGATGACCCAGCT
20631998 GAGGGAGAGT
Statistics
Matches: 128, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 128 1.00
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.25
Consensus pattern (43 bp):
ATGATGACCCAGCTATGTGCAGTGTAGGAGTGCACATGAGCTG
Found at i:20635313 original size:17 final size:18
Alignment explanation
Indices: 20635291--20635324 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
20635281 AACCCTAGGA
20635291 AGAG-AAGAAAGAAAAAG
1 AGAGAAAGAAAGAAAAAG
*
20635308 AGAGAAAGGAAGAAAAA
1 AGAGAAAGAAAGAAAAA
20635325 AGCTTGGTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (18 bp):
AGAGAAAGAAAGAAAAAG
Found at i:20643947 original size:18 final size:18
Alignment explanation
Indices: 20643920--20643977 Score: 71
Period size: 18 Copynumber: 3.2 Consensus size: 18
20643910 TTGTTGTTTG
* *
20643920 GCCTATTTGGACTACTTA
1 GCCTACTTGGGCTACTTA
*
20643938 GCCTACTTGGGGTACTTA
1 GCCTACTTGGGCTACTTA
* *
20643956 GCCTACTAGGGCTGCTTA
1 GCCTACTTGGGCTACTTA
20643974 GCCT
1 GCCT
20643978 TCTCAACCTA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.17, C:0.26, G:0.24, T:0.33
Consensus pattern (18 bp):
GCCTACTTGGGCTACTTA
Found at i:20646912 original size:19 final size:21
Alignment explanation
Indices: 20646874--20646913 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
20646864 CCACTCATGC
*
20646874 CACATTGTACATTAAATCAAG
1 CACATTGTACAATAAATCAAG
20646895 CACATTG-ACAAT-AATCAAG
1 CACATTGTACAATAAATCAAG
20646914 TTTTCTCAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
20 4 0.22
21 7 0.39
ACGTcount: A:0.45, C:0.20, G:0.10, T:0.25
Consensus pattern (21 bp):
CACATTGTACAATAAATCAAG
Found at i:20647129 original size:37 final size:37
Alignment explanation
Indices: 20647065--20647212 Score: 147
Period size: 37 Copynumber: 3.8 Consensus size: 37
20647055 TAGCCAGAGT
* *
20647065 CATCATGTGC-ACCCCCACATCATGCACAACTAATGC
1 CATCATGTGCTCCCCCCACATCACGCACAACTAATGC
*
20647101 CATCATGTGCTCCCCCCACATCCCGCACATGGCACATATAT-C
1 CATCATGTGCTCCCCCCACATCACGCACA----AC-TA-ATGC
* *
20647143 ATCATCATCGTGTTCACCCCCACATCGCGCACAACTAATGC
1 --CATCAT-GTGCTC-CCCCCACATCACGCACAACTAATGC
20647184 CATCATGTGCTCCCCCCACATCACGCACA
1 CATCATGTGCTCCCCCCACATCACGCACA
20647213 TGGCATGTAT
Statistics
Matches: 93, Mismatches: 7, Indels: 23
0.76 0.06 0.19
Matches are distributed among these distances:
36 10 0.11
37 31 0.33
38 5 0.05
39 6 0.06
40 2 0.02
41 5 0.05
42 5 0.05
43 2 0.02
44 6 0.06
45 5 0.05
46 16 0.17
ACGTcount: A:0.26, C:0.42, G:0.11, T:0.20
Consensus pattern (37 bp):
CATCATGTGCTCCCCCCACATCACGCACAACTAATGC
Found at i:20647227 original size:39 final size:39
Alignment explanation
Indices: 20647101--20647228 Score: 98
Period size: 37 Copynumber: 3.2 Consensus size: 39
20647091 CAACTAATGC
* *
20647101 CATCATGTGCTCCCCCCACATCCCGCACATGGCACATATATCAT
1 CATCATGTGCTCCCCCCACATCACGCACATGG--C--ATGT-AT
* * **** *
20647145 CATCATCGTGTTCACCCCCACATCGCGCACAACTAATG--C
1 CATCAT-GTGCTC-CCCCCACATCACGCACATGGCATGTAT
20647184 CATCATGTGCTCCCCCCACATCACGCACATGGCATGTAT
1 CATCATGTGCTCCCCCCACATCACGCACATGGCATGTAT
20647223 CATCAT
1 CATCAT
20647229 CATCATGTGC
Statistics
Matches: 65, Mismatches: 15, Indels: 13
0.70 0.16 0.14
Matches are distributed among these distances:
37 19 0.29
38 5 0.08
39 12 0.18
42 2 0.03
44 6 0.09
45 5 0.08
46 16 0.25
ACGTcount: A:0.25, C:0.40, G:0.12, T:0.23
Consensus pattern (39 bp):
CATCATGTGCTCCCCCCACATCACGCACATGGCATGTAT
Found at i:20647283 original size:83 final size:82
Alignment explanation
Indices: 20647064--20647281 Score: 348
Period size: 83 Copynumber: 2.7 Consensus size: 82
20647054 ATAGCCAGAG
* *
20647064 TCATCATGTGCACCCCCACATCATGCACAACTAATGCCATCATGTGCTCCCCCCACATCCCGCAC
1 TCATCATGTGCACCCCCACATCGTGCACAACTAATGCCATCATGTGCTCCCCCCACATCACGCAC
20647129 ATGGCACATATATCATCA
66 ATGG-ACATATATCATCA
* * *
20647147 TCATCGTGTTCACCCCCACATCGCGCACAACTAATGCCATCATGTGCTCCCCCCACATCACGCAC
1 TCATCATGTGCACCCCCACATCGTGCACAACTAATGCCATCATGTGCTCCCCCCACATCACGCAC
*
20647212 ATGG-CATGTATCATCA
66 ATGGACATATATCATCA
* *
20647228 TCATCATGTGCACCTCCACGTCGTGCACAACTAATGCCATCATGTGCTCCCCCC
1 TCATCATGTGCACCCCCACATCGTGCACAACTAATGCCATCATGTGCTCCCCCC
20647282 CCCCCCCACT
Statistics
Matches: 124, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
81 60 0.48
83 64 0.52
ACGTcount: A:0.25, C:0.40, G:0.13, T:0.22
Consensus pattern (82 bp):
TCATCATGTGCACCCCCACATCGTGCACAACTAATGCCATCATGTGCTCCCCCCACATCACGCAC
ATGGACATATATCATCA
Found at i:20649337 original size:21 final size:22
Alignment explanation
Indices: 20649312--20649352 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
20649302 CCTAGGTCGA
*
20649312 AAAATTCAAGGGAA-AAGTGTG
1 AAAATTCAAGGAAACAAGTGTG
20649333 AAAATTCAAGGAAACAAGTG
1 AAAATTCAAGGAAACAAGTG
20649353 ACAAAAGGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.51, C:0.07, G:0.24, T:0.17
Consensus pattern (22 bp):
AAAATTCAAGGAAACAAGTGTG
Found at i:20649358 original size:22 final size:21
Alignment explanation
Indices: 20649312--20649358 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
20649302 CCTAGGTCGA
* **
20649312 AAAATTCAAGGGAAAAGTGTG
1 AAAATTCAAGGAAAAAGTGAC
20649333 AAAATTCAAGGAAACAAGTGAC
1 AAAATTCAAGGAAA-AAGTGAC
20649355 AAAA
1 AAAA
20649359 GGTAAGATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 13 0.59
22 9 0.41
ACGTcount: A:0.55, C:0.09, G:0.21, T:0.15
Consensus pattern (21 bp):
AAAATTCAAGGAAAAAGTGAC
Found at i:20651642 original size:11 final size:11
Alignment explanation
Indices: 20651628--20651657 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
20651618 CAAAATAAAA
20651628 TATTAATATTT
1 TATTAATATTT
20651639 TATTAATATTT
1 TATTAATATTT
20651650 TATTAATA
1 TATTAATA
20651658 AAATATTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
TATTAATATTT
Found at i:20656263 original size:37 final size:37
Alignment explanation
Indices: 20656222--20656331 Score: 139
Period size: 37 Copynumber: 3.0 Consensus size: 37
20656212 ATAATGTTCT
* **
20656222 ATGATGATAATGAGGTGTGCGAGTAGGGAGTGCACAC
1 ATGATGATATTGAATTGTGCGAGTAGGGAGTGCACAC
* *
20656259 ATGATGACATTGAATTGTGCGAGTAGGGAGTGCACAT
1 ATGATGATATTGAATTGTGCGAGTAGGGAGTGCACAC
* * * *
20656296 ATGGTGGTATTGACTTGTGCGTGTAGGGAGTGCACA
1 ATGATGATATTGAATTGTGCGAGTAGGGAGTGCACA
20656332 AGAGCTGAGG
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.26, C:0.11, G:0.36, T:0.26
Consensus pattern (37 bp):
ATGATGATATTGAATTGTGCGAGTAGGGAGTGCACAC
Found at i:20666714 original size:21 final size:21
Alignment explanation
Indices: 20666690--20666740 Score: 102
Period size: 21 Copynumber: 2.4 Consensus size: 21
20666680 ATTTATTTTA
20666690 CTTACACGTTACAAAAGATTT
1 CTTACACGTTACAAAAGATTT
20666711 CTTACACGTTACAAAAGATTT
1 CTTACACGTTACAAAAGATTT
20666732 CTTACACGT
1 CTTACACGT
20666741 GTTTCTATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.35, C:0.22, G:0.10, T:0.33
Consensus pattern (21 bp):
CTTACACGTTACAAAAGATTT
Found at i:20669905 original size:37 final size:36
Alignment explanation
Indices: 20669860--20669996 Score: 112
Period size: 37 Copynumber: 3.5 Consensus size: 36
20669850 ATCGTGTGCA
*
20669860 CCCCCACATCGCGCACAACTAATGCCATCATGTTCT
1 CCCCCACATCGCGCACAACTAATGCCATCATGTCCT
* * *
20669896 CCCTCCACATCACGCACATGGCACATATATCATCATCATCATGTCCA
1 CCC-CCACATCGCGCACA----AC-TA-AT--GC--CATCATGTCCT
* *
20669943 CCCCCACATTGCGCACAACTAATGCCATCATGTGCT
1 CCCCCACATCGCGCACAACTAATGCCATCATGTCCT
20669979 CTCCCCACATCGCGCACA
1 C-CCCCACATCGCGCACA
20669997 TGGCATATAT
Statistics
Matches: 79, Mismatches: 10, Indels: 23
0.71 0.09 0.21
Matches are distributed among these distances:
36 13 0.16
37 28 0.35
38 1 0.01
40 2 0.03
41 4 0.05
42 4 0.05
43 2 0.03
45 1 0.01
46 12 0.15
47 12 0.15
ACGTcount: A:0.26, C:0.42, G:0.11, T:0.21
Consensus pattern (36 bp):
CCCCCACATCGCGCACAACTAATGCCATCATGTCCT
Found at i:20670054 original size:81 final size:80
Alignment explanation
Indices: 20669848--20670094 Score: 334
Period size: 81 Copynumber: 3.0 Consensus size: 80
20669838 ATAGCCGGAG
* *
20669848 TCATCGTGTGCACCCCCACATCGCGCACAACTAATGCCATCATGTTCTCCCTCCACATCACGCAC
1 TCATCGTGTGCACCCCCACATCGCGCACAACTAATGCCATCATGTGCTCCC-CCACATCGCGCAC
20669913 ATGGCACATATATCATCA
65 ATGG--CATATATCATCA
* * *
20669931 TCATCATGTCCACCCCCACATTGCGCACAACTAATGCCATCATGTGCTCTCCCCACATCGCGCAC
1 TCATCGTGTGCACCCCCACATCGCGCACAACTAATGCCATCATGTGCTC-CCCCACATCGCGCAC
20669996 ATGGCATATATCATCA
65 ATGGCATATATCATCA
* * * * *
20670012 TCATCGTGTGCACCTCCACATCACACAAAACTAATGCCATCATGTGCTCCCCCCACATTGCGCAC
1 TCATCGTGTGCACCCCCACATCGCGCACAACTAATGCCATCATGTGCT-CCCCCACATCGCGCAC
*
20670077 ATAGGCA-ATTTCATCA
65 AT-GGCATATATCATCA
20670093 TC
1 TC
20670095 CACACTCCCT
Statistics
Matches: 147, Mismatches: 14, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
81 79 0.54
82 5 0.03
83 61 0.41
84 2 0.01
ACGTcount: A:0.27, C:0.38, G:0.12, T:0.23
Consensus pattern (80 bp):
TCATCGTGTGCACCCCCACATCGCGCACAACTAATGCCATCATGTGCTCCCCCACATCGCGCACA
TGGCATATATCATCA
Found at i:20676574 original size:2 final size:2
Alignment explanation
Indices: 20676567--20676609 Score: 52
Period size: 2 Copynumber: 21.0 Consensus size: 2
20676557 TTATAAGTTA
*
20676567 AT AT AT AT AT AT GAT AT -T AA AT AT ACT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT -AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT
20676610 TAATATGTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
1 1 0.03
2 31 0.86
3 4 0.11
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (2 bp):
AT
Found at i:20677089 original size:23 final size:23
Alignment explanation
Indices: 20677040--20677098 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 23
20677030 AAATATATAT
* * *
20677040 AATAAATAATTTAGTTAATATAT
1 AATAAATAATATAGTTAATAGAG
20677063 AATAAATAATATA-TTATATAGAG
1 AATAAATAATATAGTTA-ATAGAG
20677086 AATAAAATAATAT
1 AAT-AAATAATAT
20677099 TTAATTTATT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
22 3 0.10
23 19 0.61
24 9 0.29
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (23 bp):
AATAAATAATATAGTTAATAGAG
Found at i:20677483 original size:23 final size:24
Alignment explanation
Indices: 20677449--20677506 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 24
20677439 TGAACGACAG
*
20677449 CTAAAGCTTTC-TTTGTTGTGCCAA
1 CTAAAG-TTTCTTTTGTCGTGCCAA
* *
20677473 CTAAATTTTCTTTTGTCGTGCCGA
1 CTAAAGTTTCTTTTGTCGTGCCAA
20677497 CTAAAGTTTC
1 CTAAAGTTTC
20677507 CTTTACCTTG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
23 4 0.14
24 25 0.86
ACGTcount: A:0.21, C:0.21, G:0.16, T:0.43
Consensus pattern (24 bp):
CTAAAGTTTCTTTTGTCGTGCCAA
Found at i:20681070 original size:22 final size:21
Alignment explanation
Indices: 20681041--20681081 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
20681031 GGACAAGTGT
*
20681041 ATGGTGAAAATTTGAAAACAA
1 ATGGTGAAAATTTAAAAACAA
*
20681062 ATGGATGAAATTTTAAAAAC
1 ATGG-TGAAAATTTAAAAAC
20681082 GGACCAATGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.51, C:0.05, G:0.17, T:0.27
Consensus pattern (21 bp):
ATGGTGAAAATTTAAAAACAA
Found at i:20695816 original size:21 final size:19
Alignment explanation
Indices: 20695790--20695830 Score: 55
Period size: 21 Copynumber: 2.1 Consensus size: 19
20695780 AATTTAAAAC
20695790 AAAATAACATAAAATTTAACT
1 AAAATAAC-TAAAA-TTAACT
*
20695811 AAAATAACTTAAATTAACT
1 AAAATAACTAAAATTAACT
20695830 A
1 A
20695831 CTCAACATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 7 0.37
20 4 0.21
21 8 0.42
ACGTcount: A:0.61, C:0.10, G:0.00, T:0.29
Consensus pattern (19 bp):
AAAATAACTAAAATTAACT
Found at i:20696981 original size:23 final size:23
Alignment explanation
Indices: 20696937--20696981 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
20696927 AGTAGGACTA
*
20696937 AGGAAAAATGAATGATGAAAATG
1 AGGAAAAATGAATGAAGAAAATG
*
20696960 AGGATAAAATG-ATGAAGGAAAT
1 AGGA-AAAATGAATGAAGAAAAT
20696982 AGAAATAATG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.56, C:0.00, G:0.27, T:0.18
Consensus pattern (23 bp):
AGGAAAAATGAATGAAGAAAATG
Found at i:20697251 original size:18 final size:21
Alignment explanation
Indices: 20697206--20697248 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
20697196 GCTATAAATA
20697206 TCATTTTCCAGCAGCTTCTTC
1 TCATTTTCCAGCAGCTTCTTC
*
20697227 TCATTTTCTAGCAGCTTCTTC
1 TCATTTTCCAGCAGCTTCTTC
20697248 T
1 T
20697249 TTTTCTTCCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.14, C:0.30, G:0.09, T:0.47
Consensus pattern (21 bp):
TCATTTTCCAGCAGCTTCTTC
Found at i:20700160 original size:40 final size:38
Alignment explanation
Indices: 20700067--20700172 Score: 167
Period size: 38 Copynumber: 2.7 Consensus size: 38
20700057 ATAGTGCCAG
* *
20700067 TGTGCACGATGTGGGGGGATGTACACGATGGCACTGAT
1 TGTGCACGATGTGGGGGGATGTACATGATGGCACCGAT
*
20700105 TGTGCACGATGTGGGGGGATGCACATGATGGCACCGATT
1 TGTGCACGATGTGGGGGGATGTACATGATGGCACCGA-T
20700144 ATGTGCACGATGTGGGGGGATGTACATGA
1 -TGTGCACGATGTGGGGGGATGTACATGA
20700173 GCCGGGTGTG
Statistics
Matches: 62, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
38 34 0.55
39 1 0.02
40 27 0.44
ACGTcount: A:0.22, C:0.15, G:0.40, T:0.24
Consensus pattern (38 bp):
TGTGCACGATGTGGGGGGATGTACATGATGGCACCGAT
Found at i:20701376 original size:43 final size:43
Alignment explanation
Indices: 20701315--20701444 Score: 129
Period size: 43 Copynumber: 3.0 Consensus size: 43
20701305 TTTTGTGCGA
*
20701315 TAATGATGACCCAGCTATGTTCGGTGTGGAAGTACACATGAGC
1 TAATGATGACCCAGCTATGTGCGGTGTGGAAGTACACATGAGC
* * * * *
20701358 TAATGATGACTCAGCTATGTGCTGTGTGGGAGTGCACATGAGT
1 TAATGATGACCCAGCTATGTGCGGTGTGGAAGTACACATGAGC
* * * * *
20701401 TGATGGTGAACCGGCTATGTGCGAGTAG-GG-AGTGCACATGAGC
1 TAATGATGACCCAGCTATGTGCG-GT-GTGGAAGTACACATGAGC
20701444 T
1 T
20701445 GAGTGTGGCG
Statistics
Matches: 72, Mismatches: 13, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
43 67 0.93
44 4 0.06
45 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.33, T:0.26
Consensus pattern (43 bp):
TAATGATGACCCAGCTATGTGCGGTGTGGAAGTACACATGAGC
Found at i:20711277 original size:38 final size:40
Alignment explanation
Indices: 20711235--20711337 Score: 129
Period size: 38 Copynumber: 2.6 Consensus size: 40
20711225 ATAGTGCCCG
*
20711235 TGTGCACGATGTGGGGGGATGTACACGATGG-CACTGAT-
1 TGTGCACGATGTGGGGGGATGTACACGATGGTCACGGATA
* * ** *
20711273 TGTGCACGATGTGAGGGGATGCACACGATGGTTTCGGCTA
1 TGTGCACGATGTGGGGGGATGTACACGATGGTCACGGATA
*
20711313 TGTGCACAATGTGGGGGGATGTACA
1 TGTGCACGATGTGGGGGGATGTACA
20711338 TGAGCCGGGT
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
38 29 0.54
39 3 0.06
40 22 0.41
ACGTcount: A:0.21, C:0.16, G:0.39, T:0.24
Consensus pattern (40 bp):
TGTGCACGATGTGGGGGGATGTACACGATGGTCACGGATA
Found at i:20715295 original size:30 final size:30
Alignment explanation
Indices: 20715261--20715325 Score: 94
Period size: 30 Copynumber: 2.2 Consensus size: 30
20715251 AATTTAATGG
* * *
20715261 GAAATGCTTTTCAAACAGAAAATTCTATTA
1 GAAATGCTTCTCAAACAAAAAATTCCATTA
*
20715291 GAAATGCTTCTCCAACAAAAAATTCCATTA
1 GAAATGCTTCTCAAACAAAAAATTCCATTA
20715321 GAAAT
1 GAAAT
20715326 TTTCAATGAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.45, C:0.17, G:0.09, T:0.29
Consensus pattern (30 bp):
GAAATGCTTCTCAAACAAAAAATTCCATTA
Found at i:20715372 original size:24 final size:24
Alignment explanation
Indices: 20715309--20715372 Score: 67
Period size: 24 Copynumber: 2.7 Consensus size: 24
20715299 TCTCCAACAA
* * *
20715309 AAAATTCCATTAGAAATTTTCAAT
1 AAAATTCCGTTGGAAATTTTCAAC
* *
20715333 GAAATTTCG-TGAGAAATTTTCAAC
1 AAAATTCCGTTG-GAAATTTTCAAC
20715357 AAAATTCCGTTGGAAA
1 AAAATTCCGTTGGAAA
20715373 AGCATTTTCA
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
23 1 0.03
24 28 0.90
25 2 0.06
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.33
Consensus pattern (24 bp):
AAAATTCCGTTGGAAATTTTCAAC
Found at i:20715401 original size:28 final size:28
Alignment explanation
Indices: 20715348--20715401 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
20715338 TTCGTGAGAA
**
20715348 ATTTTCAACAAAATTCCGTTGGAAAAGC
1 ATTTTCAACAAAATTCCGTTCAAAAAGC
*
20715376 ATTTTCAAAGAAAATTCCG-TCAAAAA
1 ATTTTC-AACAAAATTCCGTTCAAAAA
20715402 TTCCATTGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
28 11 0.50
29 11 0.50
ACGTcount: A:0.44, C:0.17, G:0.11, T:0.28
Consensus pattern (28 bp):
ATTTTCAACAAAATTCCGTTCAAAAAGC
Found at i:20720115 original size:42 final size:42
Alignment explanation
Indices: 20720067--20720352 Score: 383
Period size: 42 Copynumber: 6.8 Consensus size: 42
20720057 TGTCGACTCA
* * *
20720067 GCTATGTGCGAGTAGGAGTGTACATAAGCCGTTGTTGACCCG
1 GCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCTGACCCG
*
20720109 ACTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCTGACCCG
1 GCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCTGACCCG
* * *
20720151 ACTATGTGAGAGTGGGGGTGCACATAAGCCGTTGCTGACCCG
1 GCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCTGACCCG
* * * *
20720193 GCTATGTGCTAGTGGGAGTGCACATAAGCCATTGTTGACCAG
1 GCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCTGACCCG
* * * *
20720235 GCTCTGTGCGAGTGAGAGTGCACATAAGCCGTTGCTAACCTG
1 GCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCTGACCCG
***
20720277 GCTATGTGCGAGTAAAAGTGCACATAAGCCGTTGCTGACCCG
1 GCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCTGACCCG
* * *
20720319 GCTATATGCGAGTGGGAGTACGCATAAGCCGTTG
1 GCTATGTGCGAGTGGGAGTGCACATAAGCCGTTG
20720353 TATATGAGAT
Statistics
Matches: 213, Mismatches: 31, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 213 1.00
ACGTcount: A:0.23, C:0.21, G:0.33, T:0.23
Consensus pattern (42 bp):
GCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCTGACCCG
Found at i:20723847 original size:42 final size:42
Alignment explanation
Indices: 20723781--20723986 Score: 281
Period size: 42 Copynumber: 4.9 Consensus size: 42
20723771 TGATGTGGAT
*
20723781 CCCG-CTATGTGCGAGTGGAAGTGCACATAAGCCGTTGCTGA
1 CCCGACTATGTGCGAGTGGAAGTGCACATAAGCCATTGCTGA
*
20723822 CCCGACTATGTGCGAGTAGG-GGTGCACATAAGCCATTGCTGA
1 CCCGACTATGTGCGAGT-GGAAGTGCACATAAGCCATTGCTGA
** * *
20723864 CCCGGTTATGTGCGAGTGGAACTGCACATAAGCCATTGGTGA
1 CCCGACTATGTGCGAGTGGAAGTGCACATAAGCCATTGCTGA
* *
20723906 CCCGACTATATGCGAGTGGAACTGCACATAAGCCATTGCTGA
1 CCCGACTATGTGCGAGTGGAAGTGCACATAAGCCATTGCTGA
* * * *
20723948 CCCGACTATGTGCGAGTGGGAGTACGCATAAGCCGTTGC
1 CCCGACTATGTGCGAGTGGAAGTGCACATAAGCCATTGC
20723987 ATATGAGATG
Statistics
Matches: 145, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
41 6 0.04
42 137 0.94
43 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.30, T:0.22
Consensus pattern (42 bp):
CCCGACTATGTGCGAGTGGAAGTGCACATAAGCCATTGCTGA
Found at i:20726038 original size:40 final size:38
Alignment explanation
Indices: 20725977--20726079 Score: 127
Period size: 38 Copynumber: 2.7 Consensus size: 38
20725967 ACTCGGCTCA
* *
20725977 TGTACATCTCCCCACATCGTGCACATAGCCG-GCACCATCG
1 TGTACATCCCCCCACATCGTGCACA-AGCAGTG--CCATCG
* * *
20726017 TGTGCATCCCCCCATATCGTGCACAATCAGTGCCATCG
1 TGTACATCCCCCCACATCGTGCACAAGCAGTGCCATCG
20726055 TGTACATCCCCCCACATCGTGCACA
1 TGTACATCCCCCCACATCGTGCACA
20726080 CGGGCACTAT
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
38 29 0.53
39 3 0.05
40 23 0.42
ACGTcount: A:0.22, C:0.40, G:0.17, T:0.21
Consensus pattern (38 bp):
TGTACATCCCCCCACATCGTGCACAAGCAGTGCCATCG
Found at i:20726072 original size:19 final size:19
Alignment explanation
Indices: 20725977--20726075 Score: 56
Period size: 19 Copynumber: 5.1 Consensus size: 19
20725967 ACTCGGCTCA
*
20725977 TGTACATCTCCCCACATCG
1 TGTACATCCCCCCACATCG
* * **
20725996 TGCACATAGCCGGCACCATCG
1 TGTACAT-CCCCCCA-CATCG
* *
20726017 TGTGCATCCCCCCATATCG
1 TGTACATCCCCCCACATCG
* ****
20726036 TGCACAATCAGTGC-CATCG
1 TGTAC-ATCCCCCCACATCG
20726055 TGTACATCCCCCCACATCG
1 TGTACATCCCCCCACATCG
20726074 TG
1 TG
20726076 CACACGGGCA
Statistics
Matches: 53, Mismatches: 23, Indels: 8
0.63 0.27 0.10
Matches are distributed among these distances:
18 4 0.08
19 28 0.53
20 11 0.21
21 10 0.19
ACGTcount: A:0.21, C:0.39, G:0.17, T:0.22
Consensus pattern (19 bp):
TGTACATCCCCCCACATCG
Found at i:20728630 original size:16 final size:16
Alignment explanation
Indices: 20728594--20728624 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
20728584 ATAGTACAAT
*
20728594 ATATGTGTATGTATGC
1 ATATATGTATGTATGC
20728610 ATATATGTATGTATG
1 ATATATGTATGTATG
20728625 TGTATACATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.03, G:0.23, T:0.45
Consensus pattern (16 bp):
ATATATGTATGTATGC
Found at i:20728734 original size:20 final size:20
Alignment explanation
Indices: 20728592--20728735 Score: 58
Period size: 20 Copynumber: 7.3 Consensus size: 20
20728582 CAATAGTACA
* **
20728592 ATATATGTGTATGTATGCAT
1 ATATATATGTATGTATATAT
* * *
20728612 ATATGTATGTATGTGTATAC
1 ATATATATGTATGTATATAT
* ** * *
20728632 ATACATACATATATATCTAT
1 ATATATATGTATGTATATAT
* *
20728652 ATATATATGTATGTGTGTAT
1 ATATATATGTATGTATATAT
* * ** *
20728672 GTGTATACATA-G-ATACAT
1 ATATATATGTATGTATATAT
* * * *
20728690 TTGTATGTGTATGTGTATAT
1 ATATATATGTATGTATATAT
*
20728710 ATATATATGTATGTATGTAT
1 ATATATATGTATGTATATAT
*
20728730 GTATAT
1 ATATAT
20728736 GGTTAAAGTA
Statistics
Matches: 83, Mismatches: 39, Indels: 4
0.66 0.31 0.03
Matches are distributed among these distances:
18 10 0.12
19 2 0.02
20 71 0.86
ACGTcount: A:0.33, C:0.05, G:0.17, T:0.46
Consensus pattern (20 bp):
ATATATATGTATGTATATAT
Found at i:20729955 original size:8 final size:8
Alignment explanation
Indices: 20729912--20729955 Score: 52
Period size: 8 Copynumber: 5.2 Consensus size: 8
20729902 ACATATACAC
20729912 ATACATAT
1 ATACATAT
*
20729920 ATACATACAA
1 ATACAT--AT
*
20729930 ACACATAT
1 ATACATAT
20729938 ATACATAT
1 ATACATAT
20729946 ATACATAT
1 ATACATAT
20729954 AT
1 AT
20729956 GTATGTGTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
8 24 0.80
10 6 0.20
ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32
Consensus pattern (8 bp):
ATACATAT
Found at i:20729955 original size:18 final size:18
Alignment explanation
Indices: 20729902--20729955 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
20729892 ACACACACGC
*
20729902 ACATATACACATACATATAT
1 ACATATAAACAT--ATATAT
* *
20729922 ACATACAAACACATATAT
1 ACATATAAACATATATAT
*
20729940 ACATATATACATATAT
1 ACATATAAACATATAT
20729956 GTATGTGTAT
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
18 19 0.68
20 9 0.32
ACGTcount: A:0.52, C:0.19, G:0.00, T:0.30
Consensus pattern (18 bp):
ACATATAAACATATATAT
Found at i:20740846 original size:6 final size:6
Alignment explanation
Indices: 20740831--20740891 Score: 50
Period size: 6 Copynumber: 10.2 Consensus size: 6
20740821 TATACATCCG
* * * * * *
20740831 TATACA TATATG TATATA TATATA TATATA CATCTA TATACA TAGATA
1 TATATA TATATA TATATA TATATA TATATA TATATA TATATA TATATA
* *
20740879 CATACA TATATA T
1 TATATA TATATA T
20740892 GTACGTAAGC
Statistics
Matches: 40, Mismatches: 15, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
6 40 1.00
ACGTcount: A:0.46, C:0.10, G:0.03, T:0.41
Consensus pattern (6 bp):
TATATA
Found at i:20740852 original size:4 final size:4
Alignment explanation
Indices: 20740831--20740891 Score: 50
Period size: 4 Copynumber: 15.2 Consensus size: 4
20740821 TATACATCCG
* * * * * *
20740831 TATA CATA TATG TATA TATA TATA TATA TACA TCTA TATA CATA GATA
1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA
* *
20740879 CATA CATA TATA T
1 TATA TATA TATA T
20740892 GTACGTAAGC
Statistics
Matches: 45, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
4 45 1.00
ACGTcount: A:0.46, C:0.10, G:0.03, T:0.41
Consensus pattern (4 bp):
TATA
Found at i:20740868 original size:10 final size:10
Alignment explanation
Indices: 20740843--20740891 Score: 53
Period size: 10 Copynumber: 4.7 Consensus size: 10
20740833 TACATATATG
*
20740843 TATATATATA
1 TATATATACA
20740853 TATATATACA
1 TATATATACA
*
20740863 TCTATATACA
1 TATATATACA
*
20740873 TAGATACATACA
1 T--ATATATACA
20740885 TATATAT
1 TATATAT
20740892 GTACGTAAGC
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
10 24 0.75
12 8 0.25
ACGTcount: A:0.47, C:0.10, G:0.02, T:0.41
Consensus pattern (10 bp):
TATATATACA
Found at i:20767460 original size:23 final size:23
Alignment explanation
Indices: 20767427--20767484 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 23
20767417 TATGTATACC
* * *
20767427 CATCATTATCATGCACATCATC-
1 CATCATCATCATACACACCATCA
20767449 CTATCATCATCATACACACCATCA
1 C-ATCATCATCATACACACCATCA
20767473 CATCATCATCAT
1 CATCATCATCAT
20767485 CACCAGCTCA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
22 1 0.03
23 29 0.94
24 1 0.03
ACGTcount: A:0.34, C:0.34, G:0.02, T:0.29
Consensus pattern (23 bp):
CATCATCATCATACACACCATCA
Found at i:20767530 original size:43 final size:43
Alignment explanation
Indices: 20767481--20767603 Score: 140
Period size: 43 Copynumber: 2.9 Consensus size: 43
20767471 CACATCATCA
* * **
20767481 TCATCACCAGCTCATGCGCACTCCCTACTCGCACATGGCTGGG
1 TCATCACCGGCTTATGCGCACTCCCTACTCGCACATAACTGGG
* * * *
20767524 TCATCACCGGGTTATGCGCACTTCTTACTCGTACATAACTGGG
1 TCATCACCGGCTTATGCGCACTCCCTACTCGCACATAACTGGG
* *
20767567 TCATC-CTTGGCTTATGCGCACTCCCTACTCACACATA
1 TCATCAC-CGGCTTATGCGCACTCCCTACTCGCACATA
20767604 GCCGAGTCAA
Statistics
Matches: 65, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
42 1 0.02
43 64 0.98
ACGTcount: A:0.20, C:0.35, G:0.18, T:0.27
Consensus pattern (43 bp):
TCATCACCGGCTTATGCGCACTCCCTACTCGCACATAACTGGG
Found at i:20772439 original size:35 final size:35
Alignment explanation
Indices: 20772217--20772437 Score: 176
Period size: 35 Copynumber: 6.3 Consensus size: 35
20772207 TTGTGGCTAA
* *
20772217 TTAATTAAATCATTGGGCCTAATTAATTAAATT-G
1 TTAATTAAGTCATTGGGCCTAATTAATTAAATTAC
*
20772251 TTAATTAAGTCATTGGGCCTTATTAATTAAATTAC
1 TTAATTAAGTCATTGGGCCTAATTAATTAAATTAC
** * * * * *
20772286 ACAATCATGTCATTGGGTCTAATTGATTAAATTTGC
1 TTAATTAAGTCATTGGGCCTAATTAATTAAA-TTAC
* * * **
20772322 TTAATAAAGTCATTGGGCTTAATTGATTAAAATTGT
1 TTAATTAAGTCATTGGGCCTAATTAATT-AAATTAC
* ** * *
20772358 TTAATTAAATTGTTAGGCTTAATTAATTAAATT-C
1 TTAATTAAGTCATTGGGCCTAATTAATTAAATTAC
* * * *
20772392 TTTAATTAAGTTATTGGGCCTGATTGATTAAATTAA
1 -TTAATTAAGTCATTGGGCCTAATTAATTAAATTAC
*
20772428 ATAATTAAGT
1 TTAATTAAGT
20772438 TAACTTGGCC
Statistics
Matches: 149, Mismatches: 33, Indels: 9
0.78 0.17 0.05
Matches are distributed among these distances:
34 31 0.21
35 65 0.44
36 50 0.34
37 3 0.02
ACGTcount: A:0.36, C:0.08, G:0.14, T:0.43
Consensus pattern (35 bp):
TTAATTAAGTCATTGGGCCTAATTAATTAAATTAC
Found at i:20773934 original size:18 final size:18
Alignment explanation
Indices: 20773911--20773950 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
20773901 CTTTTCATAT
20773911 TATGAAAATTTTGTGAAA
1 TATGAAAATTTTGTGAAA
* *
20773929 TATGAAACTTTTGTGAAT
1 TATGAAAATTTTGTGAAA
20773947 TATG
1 TATG
20773951 TCATGTTGAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.38, C:0.03, G:0.17, T:0.42
Consensus pattern (18 bp):
TATGAAAATTTTGTGAAA
Found at i:20775526 original size:2 final size:2
Alignment explanation
Indices: 20775519--20775560 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
20775509 TAGGATGCTG
20775519 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
20775561 NNNNNNNNNN
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:20775865 original size:2 final size:2
Alignment explanation
Indices: 20775858--20775892 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
20775848 GGTGTTTATG
20775858 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
20775893 TTATGCAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:20779743 original size:2 final size:2
Alignment explanation
Indices: 20779736--20779770 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
20779726 ATTATGTTGG
*
20779736 TA TA TA TA TA GA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
20779771 GTTGTGCATG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
TA
Found at i:20779928 original size:38 final size:40
Alignment explanation
Indices: 20779886--20779991 Score: 135
Period size: 38 Copynumber: 2.7 Consensus size: 40
20779876 ATAGTGCCCG
* *
20779886 TGTGCACGATGTGGGGGGATGTACATGATGGCACT-GAT-
1 TGTGCACGATGTGGGGGGATGCACATGATGACACTAGATA
* ** *
20779924 TGTGCACGATGTGGGGGTATGCACATGATGACTTTAGCTA
1 TGTGCACGATGTGGGGGGATGCACATGATGACACTAGATA
*
20779964 TGTACACGATGTGGGGGGATGCACATGA
1 TGTGCACGATGTGGGGGGATGCACATGA
20779992 GCTGGATGTG
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
38 30 0.52
39 2 0.03
40 26 0.45
ACGTcount: A:0.23, C:0.14, G:0.37, T:0.26
Consensus pattern (40 bp):
TGTGCACGATGTGGGGGGATGCACATGATGACACTAGATA
Found at i:20783383 original size:32 final size:32
Alignment explanation
Indices: 20783310--20783383 Score: 87
Period size: 33 Copynumber: 2.3 Consensus size: 32
20783300 GAGATGGGGT
20783310 CTTAACCATTGCCAGTCCAAGGGGTAATGAGGG
1 CTTAACCATTGCCAGTCCAAGGGGTAAT-AGGG
* ** *
20783343 CTTCACCATTTTCAGTCCAAGGTGT-ATATGGG
1 CTTAACCATTGCCAGTCCAAGGGGTAATA-GGG
20783375 CTTAACCAT
1 CTTAACCAT
20783384 CACAAACTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
31 1 0.03
32 13 0.37
33 21 0.60
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (32 bp):
CTTAACCATTGCCAGTCCAAGGGGTAATAGGG
Found at i:20785358 original size:42 final size:42
Alignment explanation
Indices: 20785312--20785392 Score: 126
Period size: 42 Copynumber: 1.9 Consensus size: 42
20785302 GTGAACCCGA
* *
20785312 CTATGTACGAGTAGGAGTGTGCATACGCCGATGATGACCTGG
1 CTATGTACGAGTAGGAGTGCGCATAAGCCGATGATGACCTGG
**
20785354 CTATGTGTGAGTAGGAGTGCGCATAAGCCGATGATGACC
1 CTATGTACGAGTAGGAGTGCGCATAAGCCGATGATGACC
20785393 CAGCCATGTG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.25, C:0.19, G:0.33, T:0.23
Consensus pattern (42 bp):
CTATGTACGAGTAGGAGTGCGCATAAGCCGATGATGACCTGG
Found at i:20785402 original size:42 final size:42
Alignment explanation
Indices: 20785320--20785402 Score: 121
Period size: 42 Copynumber: 2.0 Consensus size: 42
20785310 GACTATGTAC
* * ** *
20785320 GAGTAGGAGTGTGCATACGCCGATGATGACCTGGCTATGTGT
1 GAGTAGGAGTGCGCATAAGCCGATGATGACCCAGCCATGTGT
20785362 GAGTAGGAGTGCGCATAAGCCGATGATGACCCAGCCATGTG
1 GAGTAGGAGTGCGCATAAGCCGATGATGACCCAGCCATGTG
20785403 CTAGTGGAGA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.24, C:0.19, G:0.35, T:0.22
Consensus pattern (42 bp):
GAGTAGGAGTGCGCATAAGCCGATGATGACCCAGCCATGTGT
Found at i:20793445 original size:28 final size:27
Alignment explanation
Indices: 20793364--20793531 Score: 165
Period size: 28 Copynumber: 5.8 Consensus size: 27
20793354 TTTTAACATG
*
20793364 TTTGTCTTAATTTAGACAAGAAAACATG
1 TTTGTCTTAATTTAGACAAGAAAA-ATA
* *
20793392 TTTAATCTTAATTTGGACAAGAAAAAATA
1 TTT-GTCTTAATTTAGACAAG-AAAAATA
*
20793421 TGTGTCTTAATTTAAGACAAGAAAAATA
1 TTTGTCTTAATTT-AGACAAGAAAAATA
* *
20793449 TTTTTTGTCTTAATCTAGACAAGAAAATGTA
1 ---TTTGTCTTAATTTAGACAAGAAAA-ATA
20793480 TTTGTCTTAATTTAGACAAGATAAAATAA
1 TTTGTCTTAATTTAGACAAGA-AAAAT-A
*
20793509 TTTTGTCTTAATTAAAGACAAGA
1 -TTTGTCTTAATT-TAGACAAGA
20793532 GTTGTCTTAA
Statistics
Matches: 117, Mismatches: 12, Indels: 19
0.79 0.08 0.13
Matches are distributed among these distances:
28 40 0.34
29 29 0.25
30 27 0.23
31 21 0.18
ACGTcount: A:0.42, C:0.08, G:0.12, T:0.37
Consensus pattern (27 bp):
TTTGTCTTAATTTAGACAAGAAAAATA
Found at i:20793470 original size:59 final size:58
Alignment explanation
Indices: 20793366--20793520 Score: 188
Period size: 59 Copynumber: 2.7 Consensus size: 58
20793356 TTAACATGTT
* * ** * *
20793366 TGTCTTAATTTAGACAAG-AAAACATGTTTAATCTTAATTTGGACAAGAAAAAATATG
1 TGTCTTAATTTAGACAAGAAAAATATATTTTGTCTTAATCTAGACAAGAAAAAATATG
* ** *
20793423 TGTCTTAATTTAAGACAAGAAAAATATTTTTTGTCTTAATCTAGACAAGAAAATGTATT
1 TGTCTTAATTT-AGACAAGAAAAATATATTTTGTCTTAATCTAGACAAGAAAAAATATG
20793482 TGTCTTAATTTAGACAAGATAAAATA-ATTTTGTCTTAAT
1 TGTCTTAATTTAGACAAGA-AAAATATATTTTGTCTTAAT
20793521 TAAAGACAAG
Statistics
Matches: 85, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
57 11 0.13
58 27 0.32
59 47 0.55
ACGTcount: A:0.41, C:0.08, G:0.12, T:0.38
Consensus pattern (58 bp):
TGTCTTAATTTAGACAAGAAAAATATATTTTGTCTTAATCTAGACAAGAAAAAATATG
Found at i:20793695 original size:17 final size:17
Alignment explanation
Indices: 20793673--20793705 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
20793663 ATAATAATAA
20793673 AATAA-GAGTTATTATTC
1 AATAAGGAGTT-TTATTC
20793690 AATAAGGAGTTTTATT
1 AATAAGGAGTTTTATT
20793706 TTATCAAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.39, C:0.03, G:0.15, T:0.42
Consensus pattern (17 bp):
AATAAGGAGTTTTATTC
Found at i:20800894 original size:43 final size:43
Alignment explanation
Indices: 20800847--20800956 Score: 130
Period size: 43 Copynumber: 2.6 Consensus size: 43
20800837 TTGACTCGGC
* **
20800847 TATGTGCGAGTAGGGAATGTGCATAGGCCGATGATGACCCCGT
1 TATGTGCGAGTAGGGAATGCGCATAACCCGATGATGACCCCGT
* * *
20800890 TATGTGCGAGTAGGGAATGCGCATAACCCGGTGATGACCCAGC
1 TATGTGCGAGTAGGGAATGCGCATAACCCGATGATGACCCCGT
* * * *
20800933 CATGTACGAGTAAGGAGTGCGCAT
1 TATGTGCGAGTAGGGAATGCGCAT
20800957 GAGCTGGTGA
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (43 bp):
TATGTGCGAGTAGGGAATGCGCATAACCCGATGATGACCCCGT
Found at i:20808415 original size:42 final size:42
Alignment explanation
Indices: 20808356--20808448 Score: 109
Period size: 42 Copynumber: 2.2 Consensus size: 42
20808346 TTTTATGTGA
* *
20808356 TAATGATGACCCAGCTATGTGCG-TGTGGGAGTGCACATAAGC
1 TAATGATGACCCAGCTATGTCCGATGT-AGAGTGCACATAAGC
** *
20808398 TAATGATGACGTAGCTATGTCCGATGTAGAGTGCACATGAGC
1 TAATGATGACCCAGCTATGTCCGATGTAGAGTGCACATAAGC
*
20808440 TGATG-TGAC
1 TAATGATGAC
20808449 TGTATTTGAG
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
41 4 0.09
42 37 0.84
43 3 0.07
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (42 bp):
TAATGATGACCCAGCTATGTCCGATGTAGAGTGCACATAAGC
Found at i:20809745 original size:54 final size:54
Alignment explanation
Indices: 20809685--20809839 Score: 229
Period size: 54 Copynumber: 2.9 Consensus size: 54
20809675 TGATATTGTT
20809685 CGGCTATGTGCACGATGTGGTGGGATGCACATGAGCTGGGTGAGATGGGATGTC
1 CGGCTATGTGCACGATGTGGTGGGATGCACATGAGCTGGGTGAGATGGGATGTC
* * *
20809739 TGGCTATGTACACGATGTGGTGGGATGCACATGAGCTGGGTGGGATGGGATGTC
1 CGGCTATGTGCACGATGTGGTGGGATGCACATGAGCTGGGTGAGATGGGATGTC
** * * * *
20809793 CGATTATGTGCATGATGTTGTGGGATGCACATGAGCTAGGTGTGATG
1 CGGCTATGTGCACGATGTGGTGGGATGCACATGAGCTGGGTGAGATG
20809840 CACATGATGA
Statistics
Matches: 90, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 90 1.00
ACGTcount: A:0.19, C:0.13, G:0.41, T:0.27
Consensus pattern (54 bp):
CGGCTATGTGCACGATGTGGTGGGATGCACATGAGCTGGGTGAGATGGGATGTC
Found at i:20812651 original size:2 final size:2
Alignment explanation
Indices: 20812646--20812686 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
20812636 ATACTTATGT
20812646 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
20812687 GGTTTGAATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:20816409 original size:27 final size:28
Alignment explanation
Indices: 20816379--20816432 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
20816369 TCGAAGTATA
20816379 AGGGCAAAATC-GT-AATTTTTTACCCCG
1 AGGGC-AAATCGGTAAATTTTTTACCCCG
20816406 AGGGCAAATCGGTAAATTTTTTACCCC
1 AGGGCAAATCGGTAAATTTTTTACCCC
20816433 AGCACTTGTC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
26 5 0.20
27 7 0.28
28 13 0.52
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.30
Consensus pattern (28 bp):
AGGGCAAATCGGTAAATTTTTTACCCCG
Found at i:20817827 original size:38 final size:39
Alignment explanation
Indices: 20817776--20817878 Score: 122
Period size: 38 Copynumber: 2.6 Consensus size: 39
20817766 ATAGTGCCCG
20817776 TGTGCACGATGTGGGGGGATGTACACAAT-AG-CA-CTGA
1 TGTGCACGATGTGGGGGGATGTACACAATGAGCCAGCT-A
* ** *
20817813 TTGTGCACGATGTGGGGGGATGCACATGATGGTGCCAGCTA
1 -TGTGCACGATGTGGGGGGATGTACACAAT-GAGCCAGCTA
20817854 TGTGCACGATGTGGGGGGATGTACA
1 TGTGCACGATGTGGGGGGATGTACA
20817879 TGAGCCGGGA
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
38 26 0.46
40 25 0.45
41 3 0.05
42 2 0.04
ACGTcount: A:0.22, C:0.16, G:0.39, T:0.23
Consensus pattern (39 bp):
TGTGCACGATGTGGGGGGATGTACACAATGAGCCAGCTA
Found at i:20818254 original size:21 final size:21
Alignment explanation
Indices: 20818212--20818254 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
20818202 GGCAACAATT
**
20818212 TCGCTGCAGCGAAATTCATTC
1 TCGCTGCAGCGAAAAACATTC
*
20818233 TCGCTGCAGCGAAAAACTTTC
1 TCGCTGCAGCGAAAAACATTC
20818254 T
1 T
20818255 ATTTTGTCTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.28
Consensus pattern (21 bp):
TCGCTGCAGCGAAAAACATTC
Found at i:20826097 original size:38 final size:40
Alignment explanation
Indices: 20826010--20826113 Score: 131
Period size: 38 Copynumber: 2.6 Consensus size: 40
20826000 CACCCGGCTT
*
20826010 ATGTACATCCCCCCACATCATGCACATAGCTGGCGCCATC
1 ATGTACATCCCCCCACATCATGCACATAGCTAGCGCCATC
* * * * *
20826050 ATGTGCATCCCCCCACATCGTGCACA-ATC-AGTGCCATT
1 ATGTACATCCCCCCACATCATGCACATAGCTAGCGCCATC
*
20826088 GTGTACATCCCCCCACATCATGCACA
1 ATGTACATCCCCCCACATCATGCACA
20826114 CAAACACTAT
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
38 29 0.53
39 2 0.04
40 24 0.44
ACGTcount: A:0.25, C:0.39, G:0.14, T:0.21
Consensus pattern (40 bp):
ATGTACATCCCCCCACATCATGCACATAGCTAGCGCCATC
Found at i:20832086 original size:2 final size:2
Alignment explanation
Indices: 20832076--20832114 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
20832066 ACACATTTAC
* *
20832076 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
20832115 CCTATCATCA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (2 bp):
AT
Found at i:20832180 original size:20 final size:20
Alignment explanation
Indices: 20832119--20832181 Score: 101
Period size: 20 Copynumber: 3.2 Consensus size: 20
20832109 TATATACCTA
20832119 TCATCATCATC-TCACCAAC
1 TCATCATCATCATCACCAAC
*
20832138 CCATCATCATCATCACCAAC
1 TCATCATCATCATCACCAAC
*
20832158 TCATCATCATCATCACCAGC
1 TCATCATCATCATCACCAAC
20832178 TCAT
1 TCAT
20832182 GCGCACTCCC
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
19 10 0.25
20 30 0.75
ACGTcount: A:0.32, C:0.41, G:0.02, T:0.25
Consensus pattern (20 bp):
TCATCATCATCATCACCAAC
Found at i:20832228 original size:43 final size:43
Alignment explanation
Indices: 20832180--20832341 Score: 254
Period size: 43 Copynumber: 3.8 Consensus size: 43
20832170 TCACCAGCTC
** *
20832180 ATGCGCACTCCCTACTCGCACATGGCTGGGTCATCACCGGGTT
1 ATGCGCACTCCCTACTCGCACATAACCGGGTCATCACCGGGTT
20832223 ATGCGCACTCCCTACTCGCACATAACCGGGTCATCACCGGGTT
1 ATGCGCACTCCCTACTCGCACATAACCGGGTCATCACCGGGTT
*
20832266 ATGCGCACTCCCTACTCGCACATAACCGGGTCATC-CTCGGCTT
1 ATGCGCACTCCCTACTCGCACATAACCGGGTCATCAC-CGGGTT
* *
20832309 ATGCGCACTCCCTACTCGCACATAGCCGAGTCA
1 ATGCGCACTCCCTACTCGCACATAACCGGGTCA
20832342 ACATAATTAC
Statistics
Matches: 112, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
42 1 0.01
43 111 0.99
ACGTcount: A:0.20, C:0.38, G:0.21, T:0.22
Consensus pattern (43 bp):
ATGCGCACTCCCTACTCGCACATAACCGGGTCATCACCGGGTT
Found at i:20834882 original size:65 final size:65
Alignment explanation
Indices: 20834778--20834909 Score: 239
Period size: 65 Copynumber: 2.0 Consensus size: 65
20834768 TTATAACTAA
20834778 CTCCACATGAGCTTTTATACCAATATGCAACAATTATATTTCCAAAAATTTTAACTTCGAATAGC
1 CTCCACATGAGCTTTTATACCAATATGCAACAATTATATTTCCAAAAATTTTAACTTCGAATAGC
*
20834843 CTCCACATGAGCTTTTATATCAATATGCAAC-ATATATATTTCCAAAAATTTTAACTTCGAATAG
1 CTCCACATGAGCTTTTATACCAATATGCAACAAT-TATATTTCCAAAAATTTTAACTTCGAATAG
20834907 C
65 C
20834908 CT
1 CT
20834910 TAGGCATATC
Statistics
Matches: 65, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
64 2 0.03
65 63 0.97
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.35
Consensus pattern (65 bp):
CTCCACATGAGCTTTTATACCAATATGCAACAATTATATTTCCAAAAATTTTAACTTCGAATAGC
Found at i:20836845 original size:26 final size:26
Alignment explanation
Indices: 20836785--20836846 Score: 97
Period size: 26 Copynumber: 2.4 Consensus size: 26
20836775 ACCATATACC
*
20836785 CATCATCAACATGCACACCATCCCAT
1 CATCATCATCATGCACACCATCCCAT
*
20836811 CATCATCATCATGCACATCATCCCAT
1 CATCATCATCATGCACACCATCCCAT
*
20836837 TATCATCATC
1 CATCATCATC
20836847 TCATATGCAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.32, C:0.39, G:0.03, T:0.26
Consensus pattern (26 bp):
CATCATCATCATGCACACCATCCCAT
Found at i:20837139 original size:42 final size:42
Alignment explanation
Indices: 20837081--20837246 Score: 296
Period size: 42 Copynumber: 4.0 Consensus size: 42
20837071 ATGGGGGCAA
* *
20837081 CAACGGCTTATGTGCACTCCCACTCACACATAGCCGGGTCAG
1 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTCAG
* *
20837123 CAACGGCTTATATGCACTCCTACTCGCACATAGTCGGGTCAG
1 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTCAG
20837165 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTCAG
1 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTCAG
20837207 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTC
1 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTC
20837247 CAAATCAACA
Statistics
Matches: 118, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 118 1.00
ACGTcount: A:0.22, C:0.34, G:0.22, T:0.22
Consensus pattern (42 bp):
CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTCAG
Found at i:20841703 original size:37 final size:37
Alignment explanation
Indices: 20841609--20841704 Score: 115
Period size: 38 Copynumber: 2.5 Consensus size: 37
20841599 GGCTCATGTG
* *
20841609 CATCCCCTCTCATCGTGCACATAGTCGGTGCCATCGTA
1 CATCCCC-CACATCGTGCACATAGTCAGTGCCATCGTA
20841647 CATCCCCCCACATCGTGCACA-A-TCAGTGCCATCGTGTA
1 CAT-CCCCCACATCGTGCACATAGTCAGTGCCATC--GTA
*
20841685 CATCCCCCACATCATGCACA
1 CATCCCCCACATCGTGCACA
20841705 CGGGCACTAT
Statistics
Matches: 52, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
36 10 0.19
37 17 0.33
38 21 0.40
39 4 0.08
ACGTcount: A:0.23, C:0.41, G:0.15, T:0.22
Consensus pattern (37 bp):
CATCCCCCACATCGTGCACATAGTCAGTGCCATCGTA
Found at i:20841810 original size:2 final size:2
Alignment explanation
Indices: 20841803--20841834 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
20841793 CATGCACAAC
20841803 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
20841835 CATCATAATG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:20849852 original size:115 final size:115
Alignment explanation
Indices: 20849663--20849874 Score: 329
Period size: 115 Copynumber: 1.8 Consensus size: 115
20849653 CACGACCCAG
* * * *
20849663 AACCTCCCTCGGGCCCATGACAACAGTCGCGATGTCCCGATTGATACTCATTACTCGGAATACCA
1 AACCTCCCTCGGACCCATGACAACAGTCGCGATGTCCCGATTGACACTCATTACCCGAAATACCA
*
20849728 ATTGAAACCCCGCAAGGCTTACATATTAGTTTTAAATTGTCATAACTCGA
66 ATTGAAACCCCGCAAGGCTTACATATCAGTTTTAAATTGTCATAACTCGA
* *
20849778 AACCTCTCTCGGACCCATGACAACCA-TCGCGATGTCCCGATTGACACTCATTACCCGAAATGCC
1 AACCTCCCTCGGACCCATGACAA-CAGTCGCGATGTCCCGATTGACACTCATTACCCGAAATACC
20849842 AATT-AGAACCCCGCAAGGCTTACATATCAGTTT
65 AATTGA-AACCCCGCAAGGCTTACATATCAGTTT
20849875 CTTGCCTTTT
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
114 1 0.01
115 85 0.97
116 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.25
Consensus pattern (115 bp):
AACCTCCCTCGGACCCATGACAACAGTCGCGATGTCCCGATTGACACTCATTACCCGAAATACCA
ATTGAAACCCCGCAAGGCTTACATATCAGTTTTAAATTGTCATAACTCGA
Found at i:20851810 original size:26 final size:26
Alignment explanation
Indices: 20851781--20851839 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
20851771 ATTTTCTAGT
* *
20851781 TTTCCTTTGT-TTTTCTCTTTTCTTCC
1 TTTCCTTTCTATTTTCTCTCTTCTT-C
* *
20851807 TTTCCTCTCTATTTTCTCTCTTGTTC
1 TTTCCTTTCTATTTTCTCTCTTCTTC
20851833 TTTCCTT
1 TTTCCTT
20851840 ATGGCTGGCC
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
26 15 0.56
27 12 0.44
ACGTcount: A:0.02, C:0.29, G:0.03, T:0.66
Consensus pattern (26 bp):
TTTCCTTTCTATTTTCTCTCTTCTTC
Found at i:20866910 original size:11 final size:11
Alignment explanation
Indices: 20866894--20866919 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
20866884 TTTCGTATGC
20866894 AATAAAATAAT
1 AATAAAATAAT
20866905 AATAAAATAAT
1 AATAAAATAAT
20866916 AATA
1 AATA
20866920 TCTTATTGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (11 bp):
AATAAAATAAT
Found at i:20871371 original size:17 final size:19
Alignment explanation
Indices: 20871330--20871371 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
20871320 ATGTATATAT
20871330 ATGAATATATGTTGTGCATTG
1 ATGAATATATGTTGTG-A-TG
20871351 ATGAATA-ATGTTGTG-TG
1 ATGAATATATGTTGTGATG
20871368 ATGA
1 ATGA
20871372 TGTTGAAGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
17 6 0.29
20 8 0.38
21 7 0.33
ACGTcount: A:0.31, C:0.02, G:0.26, T:0.40
Consensus pattern (19 bp):
ATGAATATATGTTGTGATG
Found at i:20871408 original size:37 final size:36
Alignment explanation
Indices: 20871366--20871474 Score: 157
Period size: 37 Copynumber: 2.9 Consensus size: 36
20871356 TAATGTTGTG
20871366 TGATGATGTTGAAGTGTGCGAGTAGGAAGTGCACACA
1 TGATGATGTTGAAGTGTGCGAGTAGG-AGTGCACACA
*
20871403 TGATGATGTTGAAGTGTGCGAATAGGGAGTGCACACA
1 TGATGATGTTGAAGTGTGCGAGTA-GGAGTGCACACA
*
20871440 TGATGATGATAGAA-TGTGCGAGTATGGAGTGCACA
1 TGATGATG-TTGAAGTGTGCGAGTA-GGAGTGCACA
20871475 TGACAATGAA
Statistics
Matches: 66, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
37 60 0.91
38 6 0.09
ACGTcount: A:0.30, C:0.10, G:0.35, T:0.25
Consensus pattern (36 bp):
TGATGATGTTGAAGTGTGCGAGTAGGAGTGCACACA
Found at i:20875270 original size:12 final size:12
Alignment explanation
Indices: 20875250--20875279 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
20875240 AGCACCTTAA
*
20875250 CTGCTCAAGTGG
1 CTGCACAAGTGG
20875262 CTGCACAAGTGG
1 CTGCACAAGTGG
20875274 CTGCAC
1 CTGCAC
20875280 TGTCGAAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.20
Consensus pattern (12 bp):
CTGCACAAGTGG
Found at i:20890661 original size:20 final size:20
Alignment explanation
Indices: 20890638--20890687 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
20890628 AAATAAAAAC
20890638 CAAAGAGAAACAAGAAAATT
1 CAAAGAGAAACAAGAAAATT
20890658 CAAAGAGAAACAAGAAAATT
1 CAAAGAGAAACAAGAAAATT
*
20890678 CAAAGGGAAA
1 CAAAGAGAAA
20890688 TTCACGTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.64, C:0.10, G:0.18, T:0.08
Consensus pattern (20 bp):
CAAAGAGAAACAAGAAAATT
Found at i:20896498 original size:2 final size:2
Alignment explanation
Indices: 20896493--20896531 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
20896483 TCTATACATG
20896493 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
20896532 TCATCATCAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:20896605 original size:43 final size:42
Alignment explanation
Indices: 20896558--20896683 Score: 117
Period size: 42 Copynumber: 3.0 Consensus size: 42
20896548 TCTCCCATCG
* *
20896558 TCATCAGCTCATATGCACTCCGCACTAGCACATGGCTGGGTCA
1 TCATCAGCTCATATGCACTCC-CACTAGCACATAGCCGGGTCA
* * * *
20896601 TCATCGGCTTATGTGCACTCCCACTCGCACATAGCCGGGTCA
1 TCATCAGCTCATATGCACTCCCACTAGCACATAGCCGGGTCA
* * * * ** * *
20896643 TCATCGGCTTATGTACACTCCTGCTCGAACATAGCCGGGTC
1 TCATCAGCTCATATGCACTCCCACTAGCACATAGCCGGGTC
20896684 CACATCAACA
Statistics
Matches: 73, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
42 55 0.75
43 18 0.25
ACGTcount: A:0.21, C:0.33, G:0.21, T:0.25
Consensus pattern (42 bp):
TCATCAGCTCATATGCACTCCCACTAGCACATAGCCGGGTCA
Found at i:20896643 original size:42 final size:42
Alignment explanation
Indices: 20896571--20896683 Score: 154
Period size: 42 Copynumber: 2.7 Consensus size: 42
20896561 TCAGCTCATA
* * *
20896571 TGCACTCCGCACTAGCACATGGCTGGGTCATCATCGGCTTATG
1 TGCACTCC-CACTCGCACATAGCCGGGTCATCATCGGCTTATG
20896614 TGCACTCCCACTCGCACATAGCCGGGTCATCATCGGCTTATG
1 TGCACTCCCACTCGCACATAGCCGGGTCATCATCGGCTTATG
* ** *
20896656 TACACTCCTGCTCGAACATAGCCGGGTC
1 TGCACTCCCACTCGCACATAGCCGGGTC
20896684 CACATCAACA
Statistics
Matches: 63, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
42 55 0.87
43 8 0.13
ACGTcount: A:0.19, C:0.34, G:0.23, T:0.24
Consensus pattern (42 bp):
TGCACTCCCACTCGCACATAGCCGGGTCATCATCGGCTTATG
Found at i:20900423 original size:63 final size:61
Alignment explanation
Indices: 20900309--20900429 Score: 215
Period size: 63 Copynumber: 2.0 Consensus size: 61
20900299 TAAGTCTAAT
*
20900309 TGGATGAAGTCCATGAGTTTAATATGCTTGCAAGGGAACTGTAATGGGTTGCAGTTATTGA
1 TGGATGAAGTCCATGAGATTAATATGCTTGCAAGGGAACTGTAATGGGTTGCAGTTATTGA
20900370 NTGGATGAAGTCCATGAGATTAATATGCCTTGCAAGGGAACTGTAATGGGTTGCAGTTAT
1 -TGGATGAAGTCCATGAGATTAATATG-CTTGCAAGGGAACTGTAATGGGTTGCAGTTAT
20900430 GACATCCTTA
Statistics
Matches: 57, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
62 25 0.44
63 32 0.56
ACGTcount: A:0.28, C:0.11, G:0.29, T:0.31
Consensus pattern (61 bp):
TGGATGAAGTCCATGAGATTAATATGCTTGCAAGGGAACTGTAATGGGTTGCAGTTATTGA
Found at i:20901448 original size:35 final size:35
Alignment explanation
Indices: 20901380--20901628 Score: 252
Period size: 35 Copynumber: 7.1 Consensus size: 35
20901370 CACTTCATTA
* *
20901380 AAATTGTTTAATTAAG---TTGTGACTAATTAATT
1 AAATTGTTTAATTAAGTCATTGGGCCTAATTAATT
*
20901412 AAATTGTTTAATTAAGTCATTCGGCCTAATTAATT
1 AAATTGTTTAATTAAGTCATTGGGCCTAATTAATT
* *
20901447 AAATTGTTTAATTAAGTCATTGTGCTTAATTAATT
1 AAATTGTTTAATTAAGTCATTGGGCCTAATTAATT
**** * * * *
20901482 AAATTAAACAATTAAGTTATTGGGCTTAGTTGATT
1 AAATTGTTTAATTAAGTCATTGGGCCTAATTAATT
* *
20901517 AAATTTGTTTAATTAAGTCATTGAGCCTAATTGATT
1 AAA-TTGTTTAATTAAGTCATTGGGCCTAATTAATT
* ** *
20901553 AAAATTGTTTAATTAAATTGTTGGGCTTAATTAATT
1 -AAATTGTTTAATTAAGTCATTGGGCCTAATTAATT
* * * *
20901589 AAATTTTTTAATTACGTTATTGGGCCTAATTGATT
1 AAATTGTTTAATTAAGTCATTGGGCCTAATTAATT
20901624 AAATT
1 AAATT
20901629 AAACAATTAA
Statistics
Matches: 178, Mismatches: 34, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
32 16 0.09
35 109 0.61
36 50 0.28
37 3 0.02
ACGTcount: A:0.35, C:0.06, G:0.13, T:0.45
Consensus pattern (35 bp):
AAATTGTTTAATTAAGTCATTGGGCCTAATTAATT
Found at i:20901477 original size:18 final size:18
Alignment explanation
Indices: 20901419--20901479 Score: 56
Period size: 18 Copynumber: 3.4 Consensus size: 18
20901409 ATTAAATTGT
20901419 TTAATTAAGTCATTCG-GC
1 TTAATTAAGTCATT-GTGC
* * *
20901437 CTAATTAATTAAATTGT--
1 TTAATTAAGT-CATTGTGC
20901454 TTAATTAAGTCATTGTGC
1 TTAATTAAGTCATTGTGC
20901472 TTAATTAA
1 TTAATTAA
20901480 TTAAATTAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
16 5 0.15
17 8 0.24
18 17 0.52
19 3 0.09
ACGTcount: A:0.34, C:0.10, G:0.11, T:0.44
Consensus pattern (18 bp):
TTAATTAAGTCATTGTGC
Found at i:20901593 original size:107 final size:106
Alignment explanation
Indices: 20901402--20901628 Score: 305
Period size: 107 Copynumber: 2.1 Consensus size: 106
20901392 TAAGTTGTGA
* *
20901402 CTAATTAATTAAA-TTGTTTAATTAAGTCATTCGGCCTAATTAATTAAATTGTTTAATTAAGTCA
1 CTAATTGATTAAATTTGTTTAATTAAGTCATTCGGCCTAATTAATTAAATTGTTTAATTAAATCA
*
20901466 TTGTGCTTAATTAATTAAATTAAACAATTAAGTTATTGGGC
66 TTGGGCTTAATTAATTAAATTAAACAATTAAGTTATTGGGC
* * *
20901507 TTAGTTGATTAAATTTGTTTAATTAAGTCATT-GAGCCTAATTGATTAAAATTGTTTAATTAAAT
1 CTAATTGATTAAATTTGTTTAATTAAGTCATTCG-GCCTAATTAATT-AAATTGTTTAATTAAAT
** **** *
20901571 TGTTGGGCTTAATTAATTAAATTTTTTAATTACGTTATTGGGC
64 CATTGGGCTTAATTAATTAAATTAAACAATTAAGTTATTGGGC
20901614 CTAATTGATTAAATT
1 CTAATTGATTAAATT
20901629 AAACAATTAA
Statistics
Matches: 104, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
105 11 0.11
106 29 0.28
107 64 0.62
ACGTcount: A:0.35, C:0.07, G:0.13, T:0.45
Consensus pattern (106 bp):
CTAATTGATTAAATTTGTTTAATTAAGTCATTCGGCCTAATTAATTAAATTGTTTAATTAAATCA
TTGGGCTTAATTAATTAAATTAAACAATTAAGTTATTGGGC
Found at i:20901619 original size:142 final size:138
Alignment explanation
Indices: 20901376--20901642 Score: 365
Period size: 142 Copynumber: 1.9 Consensus size: 138
20901366 CAAGCACTTC
*
20901376 ATTAAAATTGTTTAATTAAGTTGTGACTAATTAATTAAATTGTTTAATTAAGTCATTCGGCCTAA
1 ATTAAAATTGTTTAATTAAGTTGTGACTAATTAATTAAATTGTTTAATTAAATCATTCGGCCTAA
* *
20901441 TTAATTAAATTGTTTAATTAAGTCATTGTGCTTAATTAATTAAATTAAACAATTAAGTTATTGGG
66 TTAATTAAATTGTTTAATTAAGTCATTGGGCCTAATTAATTAAATTAAACAATTAAGTTATTGGG
20901506 CTTAGTTG
131 CTTAGTTG
* * ** *
20901514 ATTAAATTTGTTTAATTAAGTCAT-TGAGCCTAATTGATTAAAATTGTTTAATTAAATTGTTGGG
1 ATTAAAATTGTTTAATTAAGT--TGTGA--CTAATTAATT-AAATTGTTTAATTAAATCATTCGG
* * * * *
20901578 CTTAATTAATTAAATTTTTTAATTACGTTATTGGGCCTAATTGATTAAATTAAACAATTAAGTTA
61 CCTAATTAATTAAATTGTTTAATTAAGTCATTGGGCCTAATTAATTAAATTAAACAATTAAGTTA
20901643 ATTTGACTTT
Statistics
Matches: 111, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
138 20 0.18
139 3 0.03
140 1 0.01
141 9 0.08
142 78 0.70
ACGTcount: A:0.36, C:0.06, G:0.13, T:0.45
Consensus pattern (138 bp):
ATTAAAATTGTTTAATTAAGTTGTGACTAATTAATTAAATTGTTTAATTAAATCATTCGGCCTAA
TTAATTAAATTGTTTAATTAAGTCATTGGGCCTAATTAATTAAATTAAACAATTAAGTTATTGGG
CTTAGTTG
Found at i:20905853 original size:20 final size:20
Alignment explanation
Indices: 20905827--20905872 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
20905817 AATCTTACCT
* *
20905827 TTTTTCACTTGTTTCCTTGAA
1 TTTTACACTT-TTCCCTTGAA
20905848 TTTTCACACTTTTCCCTTGAA
1 TTTT-ACACTTTTCCCTTGAA
20905869 TTTT
1 TTTT
20905873 TCCACCTAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.15, C:0.22, G:0.07, T:0.57
Consensus pattern (20 bp):
TTTTACACTTTTCCCTTGAA
Found at i:20905874 original size:22 final size:22
Alignment explanation
Indices: 20905832--20905872 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
20905822 TACCTTTTTT
*
20905832 CACTTGTTTCCTTGAATTTTCA
1 CACTTGTTCCCTTGAATTTTCA
20905854 CACTT-TTCCCTTGAATTTT
1 CACTTGTTCCCTTGAATTTT
20905873 TCCACCTAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.17, C:0.24, G:0.07, T:0.51
Consensus pattern (22 bp):
CACTTGTTCCCTTGAATTTTCA
Found at i:20924702 original size:31 final size:30
Alignment explanation
Indices: 20924648--20924732 Score: 91
Period size: 31 Copynumber: 2.8 Consensus size: 30
20924638 AAAGGTGAAG
* * *
20924648 TTGTAATTATCAAAAG-TTGAAGGATCAAT
1 TTGTAATTATGAAAAGTTTGAAGGACCAAA
20924677 TTGTAATTTATGAAAAGTTTGAAGGACCAAA
1 TTGTAA-TTATGAAAAGTTTGAAGGACCAAA
* **
20924708 TTATAAAGAATGAAAAGTTTGAAGG
1 TTGT-AATTATGAAAAGTTTGAAGG
20924733 GTTAAATGGT
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
29 6 0.13
30 9 0.19
31 30 0.64
32 2 0.04
ACGTcount: A:0.44, C:0.05, G:0.20, T:0.32
Consensus pattern (30 bp):
TTGTAATTATGAAAAGTTTGAAGGACCAAA
Found at i:20928251 original size:34 final size:35
Alignment explanation
Indices: 20928153--20928294 Score: 198
Period size: 35 Copynumber: 4.1 Consensus size: 35
20928143 CTTACTCAAC
*
20928153 TCATGTGCACTCCCTACACGCACAAG-GCAATATCA
1 TCATGTGCACTCCCTACACGCAC-AGTTCAATATCA
*
20928188 TCATGTGCACTCCCTACACGCACATTTCAATATCA
1 TCATGTGCACTCCCTACACGCACAGTTCAATATCA
20928223 TCATGTGCACTCCCTA-ACGCACAGTTCAATATCA
1 TCATGTGCACTCCCTACACGCACAGTTCAATATCA
* * * * *
20928257 TAATGCGCACTCCCTAAAAGCACATTTCAATATCA
1 TCATGTGCACTCCCTACACGCACAGTTCAATATCA
20928292 TCA
1 TCA
20928295 CACATACTCC
Statistics
Matches: 97, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
34 32 0.33
35 65 0.67
ACGTcount: A:0.32, C:0.32, G:0.11, T:0.25
Consensus pattern (35 bp):
TCATGTGCACTCCCTACACGCACAGTTCAATATCA
Found at i:20928257 original size:69 final size:70
Alignment explanation
Indices: 20928153--20928294 Score: 216
Period size: 69 Copynumber: 2.0 Consensus size: 70
20928143 CTTACTCAAC
* * * *
20928153 TCATGTGCACTCCCTACACGCACAAGGCAATATCATCATGTGCACTCCCTACACGCACATTTCAA
1 TCATGTGCACTCCCTACACGCACAAGGCAATATCATAATGCGCACTCCCTAAAAGCACATTTCAA
20928218 TATCA
66 TATCA
*
20928223 TCATGTGCACTCCCTA-ACGCAC-AGTTCAATATCATAATGCGCACTCCCTAAAAGCACATTTCA
1 TCATGTGCACTCCCTACACGCACAAG-GCAATATCATAATGCGCACTCCCTAAAAGCACATTTCA
20928286 ATATCA
65 ATATCA
20928292 TCA
1 TCA
20928295 CACATACTCC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
68 2 0.03
69 48 0.73
70 16 0.24
ACGTcount: A:0.32, C:0.32, G:0.11, T:0.25
Consensus pattern (70 bp):
TCATGTGCACTCCCTACACGCACAAGGCAATATCATAATGCGCACTCCCTAAAAGCACATTTCAA
TATCA
Found at i:20931135 original size:19 final size:19
Alignment explanation
Indices: 20931111--20931152 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
20931101 GGTGGTAAGG
20931111 TGAAAATAGCATGGGAGCA
1 TGAAAATAGCATGGGAGCA
* **
20931130 TGAAAATGGTGTGGGAGCA
1 TGAAAATAGCATGGGAGCA
20931149 TGAA
1 TGAA
20931153 GGAAAAGAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.07, G:0.36, T:0.19
Consensus pattern (19 bp):
TGAAAATAGCATGGGAGCA
Found at i:20936562 original size:17 final size:17
Alignment explanation
Indices: 20936540--20936574 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
20936530 GGAGGTTTTC
20936540 CTCCCCCTAAGTGTGTG
1 CTCCCCCTAAGTGTGTG
*
20936557 CTCCCCCTTAGTGTGTG
1 CTCCCCCTAAGTGTGTG
20936574 C
1 C
20936575 ATATTTTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.09, C:0.37, G:0.23, T:0.31
Consensus pattern (17 bp):
CTCCCCCTAAGTGTGTG
Found at i:20945311 original size:42 final size:43
Alignment explanation
Indices: 20945264--20945450 Score: 184
Period size: 42 Copynumber: 4.3 Consensus size: 43
20945254 TGTGATAATA
* * *
20945264 ATGACCCAGCTATATGCGTGT-GGGAGTGCACATAAGCTGATG
1 ATGACCCAGCTATGTGCGAGTAAGGAGTGCACATAAGCTGATG
* * *
20945306 ATGACCCAGCTATGTGC-ATGT-GGGAGTGTACATGAGCTGATG
1 ATGACCCAGCTATGTGCGA-GTAAGGAGTGCACATAAGCTGATG
* ** *
20945348 ATGACCC-GACTATGTACGAGTAAGGAGTGCGTATAAGCCGATG
1 ATGACCCAG-CTATGTGCGAGTAAGGAGTGCACATAAGCTGATG
* * *
20945391 ATGACCCGGCTATGTGCGAGTAAAGAGTGCTCATAAGCAGATGATG
1 ATGACCCAGCTATGTGCGAGTAAGGAGTGCACATAAGC---TGATG
20945437 ATGACCCAGCTATG
1 ATGACCCAGCTATG
20945451 ACGATGTATG
Statistics
Matches: 120, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
41 1 0.01
42 53 0.44
43 48 0.40
44 1 0.01
46 17 0.14
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (43 bp):
ATGACCCAGCTATGTGCGAGTAAGGAGTGCACATAAGCTGATG
Found at i:20945391 original size:43 final size:43
Alignment explanation
Indices: 20945344--20945437 Score: 136
Period size: 43 Copynumber: 2.2 Consensus size: 43
20945334 TACATGAGCT
* *
20945344 GATGATGACCCGACTATGTACGAGTAAGGAGTGCGT-ATAAGCC
1 GATGATGACCCGACTATGTACGAGTAAAGAGTGC-TCATAAGCA
* *
20945387 GATGATGACCCGGCTATGTGCGAGTAAAGAGTGCTCATAAGCA
1 GATGATGACCCGACTATGTACGAGTAAAGAGTGCTCATAAGCA
20945430 GATGATGA
1 GATGATGA
20945438 TGACCCAGCT
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
42 1 0.02
43 45 0.98
ACGTcount: A:0.31, C:0.17, G:0.31, T:0.21
Consensus pattern (43 bp):
GATGATGACCCGACTATGTACGAGTAAAGAGTGCTCATAAGCA
Found at i:20945439 original size:46 final size:43
Alignment explanation
Indices: 20945340--20945454 Score: 135
Period size: 43 Copynumber: 2.6 Consensus size: 43
20945330 AGTGTACATG
* *
20945340 AGCTGATGATGACCCGACTATGTACGAGTAAGGAGTGCGTATA
1 AGCTGATGATGACCCGGCTATGTACGAGTAAAGAGTGCGTATA
* *
20945383 AGCCGATGATGACCCGGCTATGTGCGAGTAAAGAGTGC-TCATA
1 AGCTGATGATGACCCGGCTATGTACGAGTAAAGAGTGCGT-ATA
*
20945426 AGCAGATGATGATGACCCAGCTATG-ACGA
1 AGC---TGATGATGACCCGGCTATGTACGA
20945455 TGTATGAAGT
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
42 1 0.02
43 40 0.66
45 3 0.05
46 17 0.28
ACGTcount: A:0.30, C:0.19, G:0.30, T:0.21
Consensus pattern (43 bp):
AGCTGATGATGACCCGGCTATGTACGAGTAAAGAGTGCGTATA
Found at i:20950367 original size:20 final size:20
Alignment explanation
Indices: 20950342--20950401 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 20
20950332 GTTTTGGACC
*
20950342 AAATGTATCGATACATTTTG
1 AAATGTATCCATACATTTTG
* *
20950362 AAATGTATCCAAACATTTGG
1 AAATGTATCCATACATTTTG
* *
20950382 GAATGCATCCATACATTTTG
1 AAATGTATCCATACATTTTG
20950402 GGCAAAATCA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (20 bp):
AAATGTATCCATACATTTTG
Found at i:20950674 original size:21 final size:22
Alignment explanation
Indices: 20950644--20950727 Score: 91
Period size: 21 Copynumber: 3.9 Consensus size: 22
20950634 TAGGTCCTTC
* *
20950644 AAAACTTATTTAAACAAGTTTA
1 AAAACTTATTCAAACAAGTTCA
*
20950666 AAAAC-TATTCGAACAAGTTCA
1 AAAACTTATTCAAACAAGTTCA
* * *
20950687 AAAACTTATTTAAATAACTTCA
1 AAAACTTATTCAAACAAGTTCA
*
20950709 AAAA-TCATTCAAACAAGTT
1 AAAACTTATTCAAACAAGTT
20950728 TAAGGATCAC
Statistics
Matches: 50, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
21 29 0.58
22 21 0.42
ACGTcount: A:0.50, C:0.14, G:0.05, T:0.31
Consensus pattern (22 bp):
AAAACTTATTCAAACAAGTTCA
Found at i:20950712 original size:43 final size:43
Alignment explanation
Indices: 20950644--20950727 Score: 116
Period size: 43 Copynumber: 2.0 Consensus size: 43
20950634 TAGGTCCTTC
* * *
20950644 AAAACTTATTTAAACAAGTTTAAAAA-CTATTCGAACAAGTTCA
1 AAAACTTATTTAAACAACTTCAAAAATC-ATTCAAACAAGTTCA
*
20950687 AAAACTTATTTAAATAACTTCAAAAATCATTCAAACAAGTT
1 AAAACTTATTTAAACAACTTCAAAAATCATTCAAACAAGTT
20950728 TAAGGATCAC
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
43 35 0.97
44 1 0.03
ACGTcount: A:0.50, C:0.14, G:0.05, T:0.31
Consensus pattern (43 bp):
AAAACTTATTTAAACAACTTCAAAAATCATTCAAACAAGTTCA
Found at i:20950741 original size:21 final size:21
Alignment explanation
Indices: 20950705--20950757 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
20950695 TTTAAATAAC
* *
20950705 TTCAAAAATCATTCAAACAAG
1 TTCAAAGATCACTCAAACAAG
* *
20950726 TTTAAGGATCACTCAAACAAG
1 TTCAAAGATCACTCAAACAAG
20950747 TTCAAAGATCA
1 TTCAAAGATCA
20950758 TTGAAGCAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.47, C:0.19, G:0.09, T:0.25
Consensus pattern (21 bp):
TTCAAAGATCACTCAAACAAG
Found at i:20950983 original size:21 final size:21
Alignment explanation
Indices: 20950954--20951000 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
20950944 CATTCTAAGT
*
20950954 AATA-GTATCAATACCT-GAA
1 AATAGGTATCAATAACTGGAA
*
20950973 GAATAGGTATCGATAACTGGAA
1 -AATAGGTATCAATAACTGGAA
20950995 AATAGG
1 AATAGG
20951001 AAGCCTTCTC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 4 0.17
21 16 0.70
22 3 0.13
ACGTcount: A:0.45, C:0.11, G:0.21, T:0.23
Consensus pattern (21 bp):
AATAGGTATCAATAACTGGAA
Found at i:20971784 original size:46 final size:46
Alignment explanation
Indices: 20971717--20971810 Score: 161
Period size: 46 Copynumber: 2.0 Consensus size: 46
20971707 TTGAATTTAC
* *
20971717 ACACCTCTACCGACCAATATATTGAAAATAGTCATATTAACTCTCA
1 ACACCCCTACCGACCAATATATTGAAAATAATCATATTAACTCTCA
*
20971763 ACACCCCTACCGGCCAATATATTGAAAATAATCATATTAACTCTCA
1 ACACCCCTACCGACCAATATATTGAAAATAATCATATTAACTCTCA
20971809 AC
1 AC
20971811 TAGTATATTT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.39, C:0.28, G:0.06, T:0.27
Consensus pattern (46 bp):
ACACCCCTACCGACCAATATATTGAAAATAATCATATTAACTCTCA
Done.