Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26303135
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.30
Warning! 1968672 characters in sequence are not A, C, G, or T
File 20 of 66
Found at i:6724091 original size:84 final size:84
Alignment explanation
Indices: 6723921--6724109 Score: 202
Period size: 84 Copynumber: 2.2 Consensus size: 84
6723911 ATTAGCCGAT
* * * * * * *
6723921 TTTACTCACTAAACGAATTAACTAATTAATTATTGTTAATTTATTTAACTGATTTTCATACACAT
1 TTTACTCATTAACCAAATTAACTAATTAATTACTATAAATTGATTTAACTGATTTTCATACACAT
* * *
6723986 TTTAACTAAATTGATCAAC
66 TTCAACGAAATGGATCAAC
* * *
6724005 TTTTCTGATTAACCAAATTAACTAATTGATTACTATAAATTGATTTAAAC-GATTTTCATACACA
1 TTTACTCATTAACCAAATTAACTAATTAATTACTATAAATTGATTT-AACTGATTTTCATACACA
*
6724069 TTTCAACGAAATGGA-CTGAC
65 TTTCAACGAAATGGATC-AAC
**
6724089 TTTACTCATTAATTAAATTAA
1 TTTACTCATTAACCAAATTAA
6724110 TTGATTAGTT
Statistics
Matches: 85, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
83 1 0.01
84 81 0.95
85 3 0.04
ACGTcount: A:0.39, C:0.14, G:0.06, T:0.41
Consensus pattern (84 bp):
TTTACTCATTAACCAAATTAACTAATTAATTACTATAAATTGATTTAACTGATTTTCATACACAT
TTCAACGAAATGGATCAAC
Found at i:6735968 original size:2 final size:2
Alignment explanation
Indices: 6735955--6735987 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
6735945 AATACGTATA
*
6735955 TG TG TA TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
6735988 AAAGTTGCTG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.03, C:0.00, G:0.45, T:0.52
Consensus pattern (2 bp):
TG
Found at i:6740582 original size:2 final size:2
Alignment explanation
Indices: 6740575--6740605 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
6740565 TCATAATCAC
6740575 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6740606 GAGAGAGAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:6740610 original size:2 final size:2
Alignment explanation
Indices: 6740605--6740637 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
6740595 ATATATATAT
6740605 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A- AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
6740638 TGAAAACAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:6762000 original size:30 final size:31
Alignment explanation
Indices: 6761942--6762008 Score: 102
Period size: 30 Copynumber: 2.2 Consensus size: 31
6761932 AGAGTTAGTG
6761942 TGGGTTTGTGGTTGATCCCTGCTAAAAACCA
1 TGGGTTTGTGGTTGATCCCTGCTAAAAACCA
*
6761973 TGGGTTTGTGGTTGAAT-CC-GTTAAAAACCA
1 TGGGTTTGTGGTTG-ATCCCTGCTAAAAACCA
6762003 TGGGTT
1 TGGGTT
6762009 ATTGCTTGAT
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
30 16 0.47
31 16 0.47
32 2 0.06
ACGTcount: A:0.22, C:0.15, G:0.28, T:0.34
Consensus pattern (31 bp):
TGGGTTTGTGGTTGATCCCTGCTAAAAACCA
Found at i:6762029 original size:30 final size:30
Alignment explanation
Indices: 6761942--6762034 Score: 75
Period size: 30 Copynumber: 3.0 Consensus size: 30
6761932 AGAGTTAGTG
* *
6761942 TGGGTTTGTGGTTG-ATCCCTGCTAAAAACCA
1 TGGGTTTGTGCTTGAATCCATG--AAAAACCA
* * *
6761973 TGGGTTTGTGGTTGAATCCGTTAAAAACCA
1 TGGGTTTGTGCTTGAATCCATGAAAAACCA
6762003 TGGGTTAT-TGCTTG-ATCTCATGAAAAAGCCA
1 TGGGTT-TGTGCTTGAATC-CATGAAAAA-CCA
6762034 T
1 T
6762035 TGTAAGGGTT
Statistics
Matches: 53, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
29 3 0.06
30 26 0.49
31 19 0.36
32 5 0.09
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (30 bp):
TGGGTTTGTGCTTGAATCCATGAAAAACCA
Found at i:6762066 original size:34 final size:35
Alignment explanation
Indices: 6762004--6762087 Score: 116
Period size: 35 Copynumber: 2.4 Consensus size: 35
6761994 TAAAAACCAT
*
6762004 GGGTTATTGCTTGATCTCATGAAAAAGCCATTGTAA
1 GGGTTA-TGATTGATCTCATGAAAAAGCCATTGTAA
* *
6762040 GGGTTATGGTTGATCTCA-GAAAAAGCCATTGTAT
1 GGGTTATGATTGATCTCATGAAAAAGCCATTGTAA
6762074 GGGTTTATGATTGA
1 GGG-TTATGATTGA
6762088 GTCAGTTAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
34 18 0.41
35 20 0.45
36 6 0.14
ACGTcount: A:0.29, C:0.11, G:0.26, T:0.35
Consensus pattern (35 bp):
GGGTTATGATTGATCTCATGAAAAAGCCATTGTAA
Found at i:6771798 original size:20 final size:20
Alignment explanation
Indices: 6771773--6771812 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
6771763 AAATCTGTGA
6771773 AATGTATCGATACATTTGGT
1 AATGTATCGATACATTTGGT
*
6771793 AATGTATCGATACTTTTGGT
1 AATGTATCGATACATTTGGT
6771813 TCTTAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.28, C:0.10, G:0.20, T:0.42
Consensus pattern (20 bp):
AATGTATCGATACATTTGGT
Found at i:6772562 original size:35 final size:35
Alignment explanation
Indices: 6772523--6772659 Score: 141
Period size: 35 Copynumber: 3.9 Consensus size: 35
6772513 TGTATAAATA
* *
6772523 TTGATCATAGCCCATCGTGGGGGTAAGAATACCAC
1 TTGATTATAGCCCATCATGGGGGTAAGAATACCAC
*
6772558 TTGATTATAGCCCATCATGGGGGTACGAATACCAC
1 TTGATTATAGCCCATCATGGGGGTAAGAATACCAC
* * * * *
6772593 TAGATTATAGTCCATTATTGGGATAAGAATACCAC
1 TTGATTATAGCCCATCATGGGGGTAAGAATACCAC
* * ** *
6772628 ATGA-TAAAGCCCATTGTGGGGGGTCAGAATAC
1 TTGATTATAGCCCATCAT-GGGGGTAAGAATAC
6772660 TACCTTGACA
Statistics
Matches: 84, Mismatches: 17, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
34 10 0.12
35 74 0.88
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (35 bp):
TTGATTATAGCCCATCATGGGGGTAAGAATACCAC
Found at i:6783383 original size:81 final size:81
Alignment explanation
Indices: 6783298--6783485 Score: 216
Period size: 81 Copynumber: 2.3 Consensus size: 81
6783288 CACTCAATCG
* * * * * *
6783298 AGGCTAAAAGAGACCATTTTTCTCAAGCTGATGCATTAGTCGAGGCAATAGCAGGAGGGGATGGG
1 AGGCTAAAAGAGACCATTTTCCTCAAGCCGATGCAGTAGTCAAGGCAACAGCAAGAGGGGATGGG
*
6783363 AACCTTGGATCAGTTC
66 AACCTTGCATCAGTTC
* * * * * * *
6783379 AGGCTAAAGGGGACCATCTTCCTTAAGCCGATGCAGTAGTTAAGGTAGCAGCAAGAGGGGATGGG
1 AGGCTAAAAGAGACCATTTTCCTCAAGCCGATGCAGTAGTCAAGGCAACAGCAAGAGGGGATGGG
*
6783444 AACCTTGCATTAGTTC
66 AACCTTGCATCAGTTC
*
6783460 AGGC-AAAAAATGACCATTTTCCTCAA
1 AGGCTAAAAGA-GACCATTTTCCTCAA
6783486 AGCAAGGCTG
Statistics
Matches: 86, Mismatches: 20, Indels: 2
0.80 0.19 0.02
Matches are distributed among these distances:
80 3 0.03
81 83 0.97
ACGTcount: A:0.31, C:0.19, G:0.28, T:0.23
Consensus pattern (81 bp):
AGGCTAAAAGAGACCATTTTCCTCAAGCCGATGCAGTAGTCAAGGCAACAGCAAGAGGGGATGGG
AACCTTGCATCAGTTC
Found at i:6785276 original size:35 final size:35
Alignment explanation
Indices: 6785184--6785303 Score: 88
Period size: 35 Copynumber: 3.5 Consensus size: 35
6785174 TAACCATGCG
** * *
6785184 TGTGCGGTGTGGGAGTGCACATGCCG--ATGGTGA
1 TGTGCGGTGTGGGAGTGCACATGATGATATAGTAA
* * * * *
6785217 TGT--GGTGCGAGAGTACACAAGATGATATTGTAA
1 TGTGCGGTGTGGGAGTGCACATGATGATATAGTAA
*
6785250 TGTGCGGTGTGGGAGTGCACATGATGACT-TAGTTA
1 TGTGCGGTGTGGGAGTGCACATGATGA-TATAGTAA
**
6785285 CATGCGGTGTGGGAGTGCA
1 TGTGCGGTGTGGGAGTGCA
6785304 TATGGGTTGG
Statistics
Matches: 66, Mismatches: 16, Indels: 8
0.73 0.18 0.09
Matches are distributed among these distances:
31 15 0.23
33 11 0.17
35 39 0.59
36 1 0.02
ACGTcount: A:0.22, C:0.12, G:0.39, T:0.27
Consensus pattern (35 bp):
TGTGCGGTGTGGGAGTGCACATGATGATATAGTAA
Found at i:6785597 original size:74 final size:74
Alignment explanation
Indices: 6785477--6785692 Score: 306
Period size: 74 Copynumber: 2.9 Consensus size: 74
6785467 CTTAACTCCA
* * * *
6785477 CCTGCCTTGAATTTTCGCTGTAGCGAAATTGCATTCTCACTGCAGCGAGAAACTCTCGGGTGGAT
1 CCTGCCCTAAATTTT-GCTGCAGCGAAATTGCATTCTCGCTGCAGCGAGAAACTCTCGGGTGGAT
6785542 GGTCTTAACT
65 GGTCTTAACT
* **
6785552 CCTGCCCTAAATTTTGCTGCAGCGAAATTGCATTCTCGCTACAGCGAGAAACTCTTAGGTGGATG
1 CCTGCCCTAAATTTTGCTGCAGCGAAATTGCATTCTCGCTGCAGCGAGAAACTCTCGGGTGGATG
*
6785617 GTTTTAACT
66 GTCTTAACT
* * * * *
6785626 CCTACCCTAAATTTTTCTGCAGCGAAATTGTACTCTCGCTGCAGCAAGAAACTCTCGGGTGGATG
1 CCTGCCCTAAATTTTGCTGCAGCGAAATTGCATTCTCGCTGCAGCGAGAAACTCTCGGGTGGATG
6785691 GT
66 GT
6785693 GTAAATTTAG
Statistics
Matches: 125, Mismatches: 16, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
74 112 0.90
75 13 0.10
ACGTcount: A:0.23, C:0.24, G:0.23, T:0.30
Consensus pattern (74 bp):
CCTGCCCTAAATTTTGCTGCAGCGAAATTGCATTCTCGCTGCAGCGAGAAACTCTCGGGTGGATG
GTCTTAACT
Found at i:6787731 original size:31 final size:30
Alignment explanation
Indices: 6787696--6788049 Score: 330
Period size: 31 Copynumber: 11.4 Consensus size: 30
6787686 AACAAGTCAA
* **
6787696 CGTGTCACCCTATAAATTTGCTTTCACTCAG
1 CGTGTCACCC-ATAAATCTGCTACCACTCAG
6787727 CGTGTCACACCATAAATCTGCTACCACTCAG
1 CGTGTCAC-CCATAAATCTGCTACCACTCAG
6787758 CGTGTCACCCTATAAATCTGCTACCACTCAG
1 CGTGTCACCC-ATAAATCTGCTACCACTCAG
* ** *
6787789 CATGTCACCACATAAATCAACTACCATTCAG
1 CGTGTCACC-CATAAATCTGCTACCACTCAG
* *
6787820 CGTGTCACACCATAAATCTACTACCACTCAA
1 CGTGTCAC-CCATAAATCTGCTACCACTCAG
*
6787851 CCTGTCACGCCATAAATCTGCTACCACTCAG
1 CGTGTCAC-CCATAAATCTGCTACCACTCAG
* *
6787882 CGTGTCACCCCATAAATCTGCTTCCACTCAA
1 CGTGTCA-CCCATAAATCTGCTACCACTCAG
** * * *
6787913 CGTGTCAAGTCATAAAACTCCTACCATTCAG
1 CGTGTC-ACCCATAAATCTGCTACCACTCAG
* * * * *
6787944 TGTATCACCCCATAAATCTGTTACCACCCAA
1 CGTGTCA-CCCATAAATCTGCTACCACTCAG
* * *
6787975 TGTGTCATGCCATAAATGTGCTACCACTCAG
1 CGTGTCA-CCCATAAATCTGCTACCACTCAG
* * * *
6788006 CATGTCACTCCATTAATCTACTACCACTCAT
1 CGTGTCAC-CCATAAATCTGCTACCACTCAG
*
6788037 CATGTCAACCCAT
1 CGTGTC-ACCCAT
6788050 GCAAGAGGGA
Statistics
Matches: 265, Mismatches: 49, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
30 3 0.01
31 254 0.96
32 8 0.03
ACGTcount: A:0.29, C:0.34, G:0.10, T:0.26
Consensus pattern (30 bp):
CGTGTCACCCATAAATCTGCTACCACTCAG
Found at i:6787732 original size:106 final size:107
Alignment explanation
Indices: 6787339--6787734 Score: 363
Period size: 107 Copynumber: 3.7 Consensus size: 107
6787329 CCCCATTAGG
* * ** * * * *
6787339 GCATGGCGTGTCA-TCCCTCAATACTATAACAAGTCACCGCGTCATGCCATAAATCTGCCT-CCA
1 GCATGGCATGTCACT-CCACAATACTGCAACAAGTCAACGTGTCACGCCATAAATTTG-CTACCA
** * * ** * * * *
6787402 CTCAATGGGTCACCACAAGATGTCATTGACATTTAACAGTTGGG
64 CTCAGCGTGTCACCACAAGCTGTCATCAACATCTAACAATTTGA
* * * * *
6787446 GCGTGGCGTGTCA-TCCCACAATACTCCAACAAATTAGA-GTGTCACGCCATAAATTTGCTACCA
1 GCATGGCATGTCACT-CCACAATACTGCAACAAGTCA-ACGTGTCACGCCATAAATTTGCTACCA
* * *
6787509 CTCAGCATGTCACCACAAGCTGTCATCGACATCTAACAATTTGG
64 CTCAGCGTGTCACCACAAGCTGTCATCAACATCTAACAATTTGA
* * * * *
6787553 GCATGGCGTGTCACTCCACAATACTGCAACAAGTTAGCATGTCACGCCATAAATCTGCTACCACT
1 GCATGGCATGTCACTCCACAATACTGCAACAAGTCAACGTGTCACGCCATAAATTTGCTACCACT
*
6787618 CAGTGTGTCACCACAAGCTGTCATCAACATCTAACAA-TTGA
66 CAGCGTGTCACCACAAGCTGTCATCAACATCTAACAATTTGA
** * * **
6787659 GTTTGTCATGTCACTCCATAATACTGCAACAAGTCAACGTGTCAC-CCTATAAATTTGCTTTCAC
1 GCATGGCATGTCACTCCACAATACTGCAACAAGTCAACGTGTCACGCC-ATAAATTTGCTACCAC
6787723 TCAGCGTGTCAC
65 TCAGCGTGTCAC
6787735 ACCATAAATC
Statistics
Matches: 243, Mismatches: 41, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
105 2 0.01
106 66 0.27
107 174 0.72
108 1 0.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.26
Consensus pattern (107 bp):
GCATGGCATGTCACTCCACAATACTGCAACAAGTCAACGTGTCACGCCATAAATTTGCTACCACT
CAGCGTGTCACCACAAGCTGTCATCAACATCTAACAATTTGA
Found at i:6787740 original size:62 final size:62
Alignment explanation
Indices: 6787665--6787911 Score: 230
Period size: 62 Copynumber: 4.0 Consensus size: 62
6787655 TTGAGTTTGT
* * * **
6787665 CATGTCACTCCAT-AATACTGCAACAAGTCAACGTGTCACCCTATAAATTTGCTTTCACTCAG
1 CATGTCACACCATAAAT-CTGCAACAACTCAACGTGTCACCCTATAAATCTGCTACCACTCAG
* * * *
6787727 CGTGTCACACCATAAATCTGCTACCACTCAGCGTGTCACCCTATAAATCTGCTACCACTCAG
1 CATGTCACACCATAAATCTGCAACAACTCAACGTGTCACCCTATAAATCTGCTACCACTCAG
** * * * * * *
6787789 CATGTCAC-CACATAAATCAACTACCATTCAGCGTGTCACACC-ATAAATCTACTACCACTCAA
1 CATGTCACAC-CATAAATCTGCAACAACTCAACGTGTCAC-CCTATAAATCTGCTACCACTCAG
* * * * * * *
6787851 CCTGTCACGCCATAAATCTGCTACCACTCAGCGTGTCACCCCATAAATCTGCTTCCACTCA
1 CATGTCACACCATAAATCTGCAACAACTCAACGTGTCACCCTATAAATCTGCTACCACTCA
6787912 ACGTGTCAAG
Statistics
Matches: 159, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
61 3 0.02
62 150 0.94
63 6 0.04
ACGTcount: A:0.30, C:0.34, G:0.11, T:0.25
Consensus pattern (62 bp):
CATGTCACACCATAAATCTGCAACAACTCAACGTGTCACCCTATAAATCTGCTACCACTCAG
Found at i:6787912 original size:62 final size:62
Alignment explanation
Indices: 6787696--6788035 Score: 376
Period size: 62 Copynumber: 5.5 Consensus size: 62
6787686 AACAAGTCAA
* * ** * *
6787696 CGTGTCACCCTATAAATTTGCTTTCACTCAGCGTGTCACACCATAAATCTGCTACCACTCAG
1 CGTGTCACCCCATAAATCTGCTACCACTCAACGTGTCACGCCATAAATCTGCTACCACTCAG
* * * ** *
6787758 CGTGTCACCCTATAAATCTGCTACCACTCAGCATGTCAC-CACATAAATCAACTACCATTCAG
1 CGTGTCACCCCATAAATCTGCTACCACTCAACGTGTCACGC-CATAAATCTGCTACCACTCAG
* * *
6787820 CGTGTCACACCATAAATCTACTACCACTCAACCTGTCACGCCATAAATCTGCTACCACTCAG
1 CGTGTCACCCCATAAATCTGCTACCACTCAACGTGTCACGCCATAAATCTGCTACCACTCAG
* * * * * *
6787882 CGTGTCACCCCATAAATCTGCTTCCACTCAACGTGTCAAGTCATAAAACTCCTACCATTCAG
1 CGTGTCACCCCATAAATCTGCTACCACTCAACGTGTCACGCCATAAATCTGCTACCACTCAG
* * * * * * *
6787944 TGTATCACCCCATAAATCTGTTACCACCCAATGTGTCATGCCATAAATGTGCTACCACTCAG
1 CGTGTCACCCCATAAATCTGCTACCACTCAACGTGTCACGCCATAAATCTGCTACCACTCAG
* * * *
6788006 CATGTCACTCCATTAATCTACTACCACTCA
1 CGTGTCACCCCATAAATCTGCTACCACTCA
6788036 TCATGTCAAC
Statistics
Matches: 232, Mismatches: 44, Indels: 4
0.83 0.16 0.01
Matches are distributed among these distances:
61 1 0.00
62 230 0.99
63 1 0.00
ACGTcount: A:0.29, C:0.34, G:0.11, T:0.26
Consensus pattern (62 bp):
CGTGTCACCCCATAAATCTGCTACCACTCAACGTGTCACGCCATAAATCTGCTACCACTCAG
Found at i:6788936 original size:21 final size:21
Alignment explanation
Indices: 6788912--6788989 Score: 77
Period size: 21 Copynumber: 3.7 Consensus size: 21
6788902 CATTTCCAGT
6788912 AGCTTCAGATGGGCCTCTAGC
1 AGCTTCAGATGGGCCTCTAGC
** *
6788933 AGCTTCAGAAAGGCCACTAGC
1 AGCTTCAGATGGGCCTCTAGC
* * * *
6788954 AGCTTTAAATTGGCCTTTAGC
1 AGCTTCAGATGGGCCTCTAGC
6788975 AAG-TTCAGATGGGCC
1 -AGCTTCAGATGGGCC
6788990 ATCAGTAGCT
Statistics
Matches: 44, Mismatches: 12, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
21 42 0.95
22 2 0.05
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (21 bp):
AGCTTCAGATGGGCCTCTAGC
Found at i:6788975 original size:42 final size:43
Alignment explanation
Indices: 6788936--6789092 Score: 146
Period size: 42 Copynumber: 3.7 Consensus size: 43
6788926 CTCTAGCAGC
* *
6788936 TTCAGAAAG-GCCACTAGCAGCTTTAAATTGGCCTTTAGCAAG
1 TTCAGAATGAGCCACTAGCAGCTTTAAATTGGCCTTCAGCAAG
* * * *
6788978 TTCAG-ATGGGCCA-TCAGTAGCTTTAAATTAGCCTTCAACAAG
1 TTCAGAATGAGCCACT-AGCAGCTTTAAATTGGCCTTCAGCAAG
* * * * *
6789020 TTCAG-ATGAGCCGCCAACAACTTTAAATGGGCCTTCAGC-AG
1 TTCAGAATGAGCCACTAGCAGCTTTAAATTGGCCTTCAGCAAG
*
6789061 TTTCA-AATGAGCCACTAGTAGCTTTAAATTGG
1 -TTCAGAATGAGCCACTAGCAGCTTTAAATTGG
6789093 AGTTTAGTAC
Statistics
Matches: 90, Mismatches: 20, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
41 5 0.06
42 85 0.94
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (43 bp):
TTCAGAATGAGCCACTAGCAGCTTTAAATTGGCCTTCAGCAAG
Found at i:6789299 original size:21 final size:21
Alignment explanation
Indices: 6789269--6789314 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
6789259 TATCAAAATA
*
6789269 ATCTTTATTTAAACCTTCTTC
1 ATCTTCATTTAAACCTTCTTC
**
6789290 ATCTTCATTTAAATGTTCTTC
1 ATCTTCATTTAAACCTTCTTC
6789311 ATCT
1 ATCT
6789315 CCAACTTAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.24, C:0.22, G:0.02, T:0.52
Consensus pattern (21 bp):
ATCTTCATTTAAACCTTCTTC
Found at i:6789912 original size:20 final size:22
Alignment explanation
Indices: 6789869--6789915 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
6789859 AGACACAGGA
6789869 ATATACTACAGCTCAACAATAT
1 ATATACTACAGCTCAACAATAT
6789891 ATATACTACAGCTCAACAATAT
1 ATATACTACAGCTCAACAATAT
6789913 ATA
1 ATA
6789916 GACTTAGGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.47, C:0.21, G:0.04, T:0.28
Consensus pattern (22 bp):
ATATACTACAGCTCAACAATAT
Found at i:6792001 original size:2 final size:2
Alignment explanation
Indices: 6791996--6792024 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
6791986 AAAAATAATT
6791996 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6792025 TTTCAACACC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:6794670 original size:21 final size:21
Alignment explanation
Indices: 6794646--6794688 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
6794636 CGAACATCGC
6794646 AGTGTCACCCTCCAAA-GTCGT
1 AGTGTCACCCT-CAAATGTCGT
* *
6794667 AGTGTTATCCTCAAATGTCGT
1 AGTGTCACCCTCAAATGTCGT
6794688 A
1 A
6794689 TTCTCATTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.30
Consensus pattern (21 bp):
AGTGTCACCCTCAAATGTCGT
Found at i:6795448 original size:22 final size:22
Alignment explanation
Indices: 6795353--6795547 Score: 151
Period size: 23 Copynumber: 8.7 Consensus size: 22
6795343 TCAATCATGT
* *
6795353 TGTTACATGCCATTTTCAAAAAA
1 TGTTACACGCCATGTTC-AAAAA
* *
6795376 TGTTACACACCATGTTTCAAAAT
1 TGTTACACGCCATG-TTCAAAAA
** * *
6795399 TGTTACACGTTATATTTAAAAAA
1 TGTTACACGCCAT-GTTCAAAAA
*
6795422 GGTTACACGCCATGTTCAAAAA
1 TGTTACACGCCATGTTCAAAAA
* *
6795444 TGTTACACG-TAAGTTCAAAAAA
1 TGTTACACGCCATGTTC-AAAAA
* *
6795466 TGTTACACGCCGTGTTTAAAAA
1 TGTTACACGCCATGTTCAAAAA
* * * *
6795488 TATTACAC-ACAAGTTCAAAACT
1 TGTTACACGCCATGTTCAAAA-A
* *
6795510 TGTTACACGCCATGTTCCTAACA
1 TGTTACACGCCATGTT-CAAAAA
6795533 TGTTACACGCCATGT
1 TGTTACACGCCATGT
6795548 GCTAACGCAT
Statistics
Matches: 131, Mismatches: 34, Indels: 14
0.73 0.19 0.08
Matches are distributed among these distances:
21 13 0.10
22 48 0.37
23 64 0.49
24 6 0.05
ACGTcount: A:0.36, C:0.20, G:0.12, T:0.31
Consensus pattern (22 bp):
TGTTACACGCCATGTTCAAAAA
Found at i:6795487 original size:44 final size:44
Alignment explanation
Indices: 6795367--6795525 Score: 185
Period size: 44 Copynumber: 3.6 Consensus size: 44
6795357 ACATGCCATT
* *
6795367 TTCAAAAAATGTTACACACCATGTTTCAAAATTGTTACACGTTATA-
1 TTCAAAAAATGTTACACGCCATGTTT-AAAAATGTTACACG-TA-AG
* * *
6795413 TTTAAAAAAGGTTACACGCCATGTTCAAAAATGTTACACGTAAG
1 TTCAAAAAATGTTACACGCCATGTTTAAAAATGTTACACGTAAG
* * **
6795457 TTCAAAAAATGTTACACGCCGTGTTTAAAAATATTACACACAAG
1 TTCAAAAAATGTTACACGCCATGTTTAAAAATGTTACACGTAAG
**
6795501 TTCAAAACTTGTTACACGCCATGTT
1 TTCAAAAAATGTTACACGCCATGTT
6795526 CCTAACATGT
Statistics
Matches: 97, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
43 1 0.01
44 61 0.63
45 13 0.13
46 22 0.23
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.31
Consensus pattern (44 bp):
TTCAAAAAATGTTACACGCCATGTTTAAAAATGTTACACGTAAG
Found at i:6798560 original size:19 final size:19
Alignment explanation
Indices: 6798536--6798573 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
6798526 ACTTCTAAAC
6798536 CTCAAATCATACTCCAATA
1 CTCAAATCATACTCCAATA
6798555 CTCAAATCATACTCCAATA
1 CTCAAATCATACTCCAATA
6798574 AGTCAAATGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.32, G:0.00, T:0.26
Consensus pattern (19 bp):
CTCAAATCATACTCCAATA
Found at i:6801770 original size:68 final size:66
Alignment explanation
Indices: 6801611--6801785 Score: 185
Period size: 68 Copynumber: 2.6 Consensus size: 66
6801601 CCATACCAAC
** * *
6801611 TCATCTCATACAGTATATGAAATTTTACATCATATACACAACTCATGGCATTCCTTATGCCTATT
1 TCATCTCATGTAGTATATGAAA-TATACATCATATACATAACTCATGGCATTCC-TATGCCTATT
6801676 CAA
64 CAA
* * * * * *
6801679 T-ATCTCATGTAATATACGGAATATACATCGTATACATAATTTCATGGCATTTACC-ATG-CTTT
1 TCATCTCATGTAGTATATGAAATATACATCATATACATAA-CTCATGGCA-TT-CCTATGCCTAT
6801741 CTCAA
63 -TCAA
6801746 TCATCTCATGTAGTATATGAAATATACATCATATACATAA
1 TCATCTCATGTAGTATATGAAATATACATCATATACATAA
6801786 ACATAGAAAT
Statistics
Matches: 88, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
66 18 0.20
67 31 0.35
68 37 0.42
69 2 0.02
ACGTcount: A:0.35, C:0.20, G:0.09, T:0.36
Consensus pattern (66 bp):
TCATCTCATGTAGTATATGAAATATACATCATATACATAACTCATGGCATTCCTATGCCTATTCA
A
Found at i:6802838 original size:13 final size:13
Alignment explanation
Indices: 6802820--6802847 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
6802810 TTATTTCAAG
6802820 ATATTTGTAAAAC
1 ATATTTGTAAAAC
6802833 ATATTTGTAAAAC
1 ATATTTGTAAAAC
6802846 AT
1 AT
6802848 TCATATCATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.07, G:0.07, T:0.39
Consensus pattern (13 bp):
ATATTTGTAAAAC
Found at i:6804799 original size:13 final size:13
Alignment explanation
Indices: 6804781--6804806 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
6804771 TTTTTGGGAA
6804781 ATTTATTTTTTAT
1 ATTTATTTTTTAT
6804794 ATTTATTTTTTAT
1 ATTTATTTTTTAT
6804807 TCTAATGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (13 bp):
ATTTATTTTTTAT
Found at i:6807080 original size:16 final size:17
Alignment explanation
Indices: 6807050--6807087 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
6807040 AATCAATATT
6807050 TTTA-TAATAATTGAAA
1 TTTATTAATAATTGAAA
*
6807066 TTTATTAATAA-TGAAT
1 TTTATTAATAATTGAAA
6807082 TTTATT
1 TTTATT
6807088 TTATGATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (17 bp):
TTTATTAATAATTGAAA
Found at i:6808379 original size:36 final size:36
Alignment explanation
Indices: 6808338--6808411 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
6808328 AGTGAGAGAT
*
6808338 AAGAGATCACTATCTTTAAGTCAATACTTAACAAAA
1 AAGAGATCACTATCTTTAAGTCAATACATAACAAAA
6808374 AAGAGATCACTATCTTTAAGTCAATACATAACAAAA
1 AAGAGATCACTATCTTTAAGTCAATACATAACAAAA
6808410 AA
1 AA
6808412 ACATGAACAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.50, C:0.16, G:0.08, T:0.26
Consensus pattern (36 bp):
AAGAGATCACTATCTTTAAGTCAATACATAACAAAA
Found at i:6808424 original size:35 final size:36
Alignment explanation
Indices: 6808346--6808424 Score: 108
Period size: 36 Copynumber: 2.2 Consensus size: 36
6808336 ATAAGAGATC
* * *
6808346 ACTATCTTTAAGTCAATACTTAACAAAAAAGAGATC
1 ACTATCTTTAAGTCAATACATAACAAAAAAGACATA
6808382 ACTATCTTTAAGTCAATACATAACAAAAAA-ACATGA
1 ACTATCTTTAAGTCAATACATAACAAAAAAGACAT-A
6808418 AC-ATCTT
1 ACTATCTT
6808425 CAAAGAGTAG
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
35 8 0.21
36 31 0.79
ACGTcount: A:0.48, C:0.18, G:0.06, T:0.28
Consensus pattern (36 bp):
ACTATCTTTAAGTCAATACATAACAAAAAAGACATA
Found at i:6814980 original size:30 final size:30
Alignment explanation
Indices: 6814932--6815000 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 30
6814922 GAACTACATG
* *
6814932 ACATGGTA-AGTATAGACATTTCCTAAACT
1 ACATGGCATAGTACAGACATTTCCTAAACT
*
6814961 ACATGGCATAGTACAGACATTTCCTAAATT
1 ACATGGCATAGTACAGACATTTCCTAAACT
*
6814991 ATATGGCATA
1 ACATGGCATA
6815001 TTTTATGTCA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
29 7 0.20
30 28 0.80
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.30
Consensus pattern (30 bp):
ACATGGCATAGTACAGACATTTCCTAAACT
Found at i:6816285 original size:26 final size:25
Alignment explanation
Indices: 6816240--6816291 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
6816230 AATTTAATAA
* *
6816240 TAAAAAAATATATTTTATATAAATT
1 TAAAAAAATATATATAATATAAATT
*
6816265 TAAAAATAATATATATAATATTAATT
1 TAAAAA-AATATATATAATATAAATT
6816291 T
1 T
6816292 GATCTTTTAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (25 bp):
TAAAAAAATATATATAATATAAATT
Found at i:6816379 original size:17 final size:18
Alignment explanation
Indices: 6816355--6816396 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
6816345 AATCAATTGT
**
6816355 ATTAAACTCTTTAAATCA
1 ATTAAACTCAATAAATCA
6816373 A-TAAACTCAATAAATCA
1 ATTAAACTCAATAAATCA
6816390 ATTAAAC
1 ATTAAAC
6816397 CGAACCATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.52, C:0.17, G:0.00, T:0.31
Consensus pattern (18 bp):
ATTAAACTCAATAAATCA
Found at i:6844061 original size:19 final size:19
Alignment explanation
Indices: 6844037--6844076 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
6844027 AAGGCAAACA
*
6844037 ATTAAATTTAAAAAGTCGC
1 ATTAAATTTAAAAAGCCGC
6844056 ATTAAATTTAAAAAGCCGC
1 ATTAAATTTAAAAAGCCGC
6844075 AT
1 AT
6844077 GGTCACTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.30
Consensus pattern (19 bp):
ATTAAATTTAAAAAGCCGC
Found at i:6849909 original size:23 final size:23
Alignment explanation
Indices: 6849883--6849933 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
6849873 TTTTAGAGTT
6849883 TGTGAAACGGA-ATGGTGGAAATG
1 TGTGAAA-GGACATGGTGGAAATG
* * *
6849906 TGTGACATGACATGGTGGGAATG
1 TGTGAAAGGACATGGTGGAAATG
6849929 TGTGA
1 TGTGA
6849934 TACGTCATGG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 2 0.08
23 22 0.92
ACGTcount: A:0.29, C:0.06, G:0.39, T:0.25
Consensus pattern (23 bp):
TGTGAAAGGACATGGTGGAAATG
Found at i:6849942 original size:23 final size:23
Alignment explanation
Indices: 6849894--6849950 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 23
6849884 GTGAAACGGA
* *
6849894 ATGGTGGAAATGTGTGACATGAC
1 ATGGTGGGAATGTGTGACACGAC
* *
6849917 ATGGTGGGAATGTGTGATACGTC
1 ATGGTGGGAATGTGTGACACGAC
*
6849940 ATGGTGAGAAT
1 ATGGTGGGAAT
6849951 ATGCGAGATG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.28, C:0.07, G:0.37, T:0.28
Consensus pattern (23 bp):
ATGGTGGGAATGTGTGACACGAC
Found at i:6850150 original size:92 final size:91
Alignment explanation
Indices: 6850051--6850229 Score: 288
Period size: 92 Copynumber: 1.9 Consensus size: 91
6850041 ACATAATACG
* *
6850051 GTTTAGAGTGTGTGGCATA-CCATGGTTAGACGTGTGACATGAGAGGGTTATAATGTGTGAAACG
1 GTTTAGAGTGTGT-G-ATACCCATGGTCAGACGTGTGACACGAGAGGGTTATAATGTGTGAAACG
6850115 ACACAGTGATAATGTGTGACACGGCAGA
64 ACACAGTGATAATGTGTGACACGGCAGA
*
6850143 GTTTAGAGTGTGTGATACGCCATGGTCAGACGTGTGACACGAGAGGGTTATAATGTGTGAAATGA
1 GTTTAGAGTGTGTGATAC-CCATGGTCAGACGTGTGACACGAGAGGGTTATAATGTGTGAAACGA
*
6850208 CACAGTGATAATGTTTGACACG
65 CACAGTGATAATGTGTGACACG
6850230 AGTGTGACGC
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
90 3 0.04
91 1 0.01
92 77 0.95
ACGTcount: A:0.29, C:0.12, G:0.32, T:0.27
Consensus pattern (91 bp):
GTTTAGAGTGTGTGATACCCATGGTCAGACGTGTGACACGAGAGGGTTATAATGTGTGAAACGAC
ACAGTGATAATGTGTGACACGGCAGA
Found at i:6850201 original size:23 final size:23
Alignment explanation
Indices: 6850082--6850202 Score: 68
Period size: 23 Copynumber: 5.3 Consensus size: 23
6850072 ATGGTTAGAC
*
6850082 GTGTGACATGAGAGGGTTATAAT
1 GTGTGACACGAGAGGGTTATAAT
* * ** *
6850105 GTGTGAAACGACACAGTGATAAT
1 GTGTGACACGAGAGGGTTATAAT
*
6850128 GTGTGACACG-GCAGAGTT-TAGAGT
1 GTGTGACACGAG-AGGGTTATA-A-T
* ** * * * *
6850152 GTGTGATACGCCATGGTCA-GAC
1 GTGTGACACGAGAGGGTTATAAT
6850174 GTGTGACACGAGAGGGTTATAAT
1 GTGTGACACGAGAGGGTTATAAT
6850197 GTGTGA
1 GTGTGA
6850203 AATGACACAG
Statistics
Matches: 68, Mismatches: 24, Indels: 12
0.65 0.23 0.12
Matches are distributed among these distances:
22 16 0.24
23 39 0.57
24 13 0.19
ACGTcount: A:0.29, C:0.12, G:0.34, T:0.26
Consensus pattern (23 bp):
GTGTGACACGAGAGGGTTATAAT
Found at i:6850228 original size:46 final size:46
Alignment explanation
Indices: 6850082--6850231 Score: 157
Period size: 46 Copynumber: 3.3 Consensus size: 46
6850072 ATGGTTAGAC
*
6850082 GTGTGACATGAGAGGGTTATAATGTGTGAAACGACACAGTGATAAT
1 GTGTGACACGAGAGGGTTATAATGTGTGAAACGACACAGTGATAAT
* * * *
6850128 GTGTGACACG-GCAGAGTT-TAGAGTGTGTGATACG-C-CA-TGGTCAGAC
1 GTGTGACACGAG-AGGGTTATA-A-TGTGTGAAACGACACAGTGAT-A-AT
*
6850174 GTGTGACACGAGAGGGTTATAATGTGTGAAATGACACAGTGATAAT
1 GTGTGACACGAGAGGGTTATAATGTGTGAAACGACACAGTGATAAT
*
6850220 GTTTGACACGAG
1 GTGTGACACGAG
6850232 TGTGACGCGG
Statistics
Matches: 83, Mismatches: 11, Indels: 20
0.73 0.10 0.18
Matches are distributed among these distances:
44 3 0.04
45 15 0.18
46 46 0.55
47 16 0.19
48 3 0.04
ACGTcount: A:0.31, C:0.12, G:0.32, T:0.25
Consensus pattern (46 bp):
GTGTGACACGAGAGGGTTATAATGTGTGAAACGACACAGTGATAAT
Found at i:6850330 original size:23 final size:23
Alignment explanation
Indices: 6850274--6850331 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 23
6850264 ACCATGGAGG
* *
6850274 GAATTTGTGACACGACAAGGTGA
1 GAATATGTGAGACGACAAGGTGA
* * *
6850297 TAATGTGTGAGACGACACGGTGA
1 GAATATGTGAGACGACAAGGTGA
6850320 GAATATGTGAGA
1 GAATATGTGAGA
6850332 TGGGTGTGAC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.34, C:0.10, G:0.33, T:0.22
Consensus pattern (23 bp):
GAATATGTGAGACGACAAGGTGA
Found at i:6850485 original size:208 final size:208
Alignment explanation
Indices: 6850128--6850597 Score: 694
Period size: 208 Copynumber: 2.3 Consensus size: 208
6850118 CAGTGATAAT
* *
6850128 GTGTGACACGGCAGA-GTTTAGAGTGTGTGATACGCCATGGTCAG-ACGTGTGACACGAGAGGGT
1 GTGTGACACGGCA-ACGTTTAGAGTGTGTGACACGCCATGGTCAGAACGTGTGACACGAGAAGGT
* * * * ** *
6850191 TATAATGTGTGAAATGACACAGTGATAATGTTTGACACGAGTGTGACGCGGTAGGGTTTAGAGTG
65 CATAATGTGTGAAACGACACAGTGATAATGTTTGACACAAGTGTGACACGACAAGGTTTAGAGTG
* * * *
6850256 TGTGACACACCATGGAGGGAATTTGTGACACGACAAGGTGATAATGTGTGAGACGACACGGTGAG
130 TGTGACACACCATGGAGGGAATCTATGACACAACAAGGTGATAATGTGTAAGACGACACGGTGAG
*
6850321 AATATGTGAGATGG
195 AATATGTGAGACGG
*
6850335 GTGTGACACGGCAACGTTTAGAGTGTGTGACACGCCATGGTCAGAACATGTGACACG-GTAAGGT
1 GTGTGACACGGCAACGTTTAGAGTGTGTGACACGCCATGGTCAGAACGTGTGACACGAG-AAGGT
*
6850399 CATAATGTGTGAAACGGCACAGTGATAATGTTTGACACAAGTGTGACACGACAAGGTTTAGAGTG
65 CATAATGTGTGAAACGACACAGTGATAATGTTTGACACAAGTGTGACACGACAAGGTTTAGAGTG
** * *
6850464 TGTGACACGGCATGGAGGGAATCTATGACACAACAGGGTGATAATGTGTAAGACGACATGGTGAG
130 TGTGACACACCATGGAGGGAATCTATGACACAACAAGGTGATAATGTGTAAGACGACACGGTGAG
6850529 AATATGTGAGACGG
195 AATATGTGAGACGG
* * *
6850543 GTGTGACACGGCAGCGTTTAAAGTGTGTGACATGCCATGGTCAGAACGTGTGACA
1 GTGTGACACGGCAACGTTTAGAGTGTGTGACACGCCATGGTCAGAACGTGTGACA
6850598 TAGCATGGCT
Statistics
Matches: 236, Mismatches: 24, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
206 1 0.00
207 42 0.18
208 193 0.82
ACGTcount: A:0.29, C:0.14, G:0.33, T:0.23
Consensus pattern (208 bp):
GTGTGACACGGCAACGTTTAGAGTGTGTGACACGCCATGGTCAGAACGTGTGACACGAGAAGGTC
ATAATGTGTGAAACGACACAGTGATAATGTTTGACACAAGTGTGACACGACAAGGTTTAGAGTGT
GTGACACACCATGGAGGGAATCTATGACACAACAAGGTGATAATGTGTAAGACGACACGGTGAGA
ATATGTGAGACGG
Found at i:6850597 original size:23 final size:23
Alignment explanation
Indices: 6850567--6850628 Score: 74
Period size: 23 Copynumber: 2.7 Consensus size: 23
6850557 CGTTTAAAGT
6850567 GTGTGACATGCCATGG-TCAGAAC
1 GTGTGACATGCCATGGCT-AGAAC
*
6850590 GTGTGACATAG-CATGGCTTGAAC
1 GTGTGACAT-GCCATGGCTAGAAC
*
6850613 GTGTGACACGCCATGG
1 GTGTGACATGCCATGG
6850629 GTTTAATATG
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
22 1 0.03
23 31 0.91
24 2 0.06
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.23
Consensus pattern (23 bp):
GTGTGACATGCCATGGCTAGAAC
Found at i:6850597 original size:104 final size:104
Alignment explanation
Indices: 6850128--6850597 Score: 462
Period size: 104 Copynumber: 4.5 Consensus size: 104
6850118 CAGTGATAAT
* * * * *
6850128 GTGTGACACGGCAGAGTTTAGAGTGTGTGATACGCCATGGTCAG-ACGTGTGACACGAGAGGGTT
1 GTGTGACACGGCAGCGTTTAGAGTGTGTGACACGCCATGGTCAGAACGTGTGACACGACAAGGTG
* * * *
6850192 ATAATGTGTGAAATGACACAGTGATAATGTTTGACACGA
66 ATAATGTGTGAAACGACACAGTGAGAATATGTGACACGA
* * * * *** **
6850231 GTGTGACGCGGTAGGGTTTAGAGTGTGTGACACACCATGGAGGGAATTTGTGACACGACAAGGTG
1 GTGTGACACGGCAGCGTTTAGAGTGTGTGACACGCCATGGTCAGAACGTGTGACACGACAAGGTG
* * * * *
6850296 ATAATGTGTGAGACGACACGGTGAGAATATGTGAGATGG
66 ATAATGTGTGAAACGACACAGTGAGAATATGTGACACGA
* * ** *
6850335 GTGTGACACGGCAACGTTTAGAGTGTGTGACACGCCATGGTCAGAACATGTGACACGGTAAGGTC
1 GTGTGACACGGCAGCGTTTAGAGTGTGTGACACGCCATGGTCAGAACGTGTGACACGACAAGGTG
* * * * *
6850400 ATAATGTGTGAAACGGCACAGTGATAATGTTTGACACAA
66 ATAATGTGTGAAACGACACAGTGAGAATATGTGACACGA
* * *** * * *
6850439 GTGTGACACGACAAG-GTTTAGAGTGTGTGACACGGCATGGAGGGAATC-TATGACACAACAGGG
1 GTGTGACACGGC-AGCGTTTAGAGTGTGTGACACGCCATGGTCAGAA-CGTGTGACACGACAAGG
** * *
6850502 TGATAATGTGT-AAGACGACATGGTGAGAATATGTGAGACGG
64 TGATAATGTGTGAA-ACGACACAGTGAGAATATGTGACACGA
* *
6850543 GTGTGACACGGCAGCGTTTAAAGTGTGTGACATGCCATGGTCAGAACGTGTGACA
1 GTGTGACACGGCAGCGTTTAGAGTGTGTGACACGCCATGGTCAGAACGTGTGACA
6850598 TAGCATGGCT
Statistics
Matches: 287, Mismatches: 74, Indels: 11
0.77 0.20 0.03
Matches are distributed among these distances:
103 41 0.14
104 244 0.85
105 2 0.01
ACGTcount: A:0.29, C:0.14, G:0.33, T:0.23
Consensus pattern (104 bp):
GTGTGACACGGCAGCGTTTAGAGTGTGTGACACGCCATGGTCAGAACGTGTGACACGACAAGGTG
ATAATGTGTGAAACGACACAGTGAGAATATGTGACACGA
Found at i:6851165 original size:55 final size:55
Alignment explanation
Indices: 6851077--6851251 Score: 190
Period size: 55 Copynumber: 3.2 Consensus size: 55
6851067 TGGCGCATTA
* *
6851077 TGGGTTAACTGGTTTTTTGGGTTTTTAGCGTGTCACGGTTATTCCTAGCGTGTTG
1 TGGGTTAACTGGTTTTTTGGTTTTTTAGCGTGTCACGGATATTCCTAGCGTGTTG
* * * *
6851132 TGGGTTAACTGGTTTTTTGAGTTTTTTA-TGTGTCATGGATGTTCCTGGCGTGTTG
1 TGGGTTAACTGGTTTTTTG-GTTTTTTAGCGTGTCACGGATATTCCTAGCGTGTTG
* * * * * * * ** *
6851187 TGGGTTAACTGGATTTATGGGTTTTTGGCGTGTCACGGCTGTTCCTGGCGACTTA
1 TGGGTTAACTGGTTTTTTGGTTTTTTAGCGTGTCACGGATATTCCTAGCGTGTTG
6851242 TGGGTTAACT
1 TGGGTTAACT
6851252 AGTCACATGG
Statistics
Matches: 102, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
54 6 0.06
55 89 0.87
56 7 0.07
ACGTcount: A:0.12, C:0.13, G:0.31, T:0.44
Consensus pattern (55 bp):
TGGGTTAACTGGTTTTTTGGTTTTTTAGCGTGTCACGGATATTCCTAGCGTGTTG
Found at i:6851275 original size:110 final size:110
Alignment explanation
Indices: 6851077--6851276 Score: 238
Period size: 110 Copynumber: 1.8 Consensus size: 110
6851067 TGGCGCATTA
* * * ** *
6851077 TGGGTTAACTGGTTTTTTGGGTTTTTAGCGTGTCACGGTTATTCCTAGCGTGTTGTGGGTTAACT
1 TGGGTTAACTGGATTTATGGGTTTTTAGCGTGTCACGGCTATTCCTAGCGACTTATGGGTTAACT
* **** * *
6851142 GGTTTTTTGAGTTTTTTATGTGTCATGGATGTTCCTGGCGTGTTG
66 AGTCACATGAGTTTTTGACGTGTCATGGATGTTCCTGGCGTGTTG
* * *
6851187 TGGGTTAACTGGATTTATGGGTTTTTGGCGTGTCACGGCTGTTCCTGGCGACTTATGGGTTAACT
1 TGGGTTAACTGGATTTATGGGTTTTTAGCGTGTCACGGCTATTCCTAGCGACTTATGGGTTAACT
* *
6851252 AGTCACATGGGTTTTTGGCGTGTCA
66 AGTCACATGAGTTTTTGACGTGTCA
6851277 CAACAATGAT
Statistics
Matches: 72, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
110 72 1.00
ACGTcount: A:0.12, C:0.13, G:0.32, T:0.43
Consensus pattern (110 bp):
TGGGTTAACTGGATTTATGGGTTTTTAGCGTGTCACGGCTATTCCTAGCGACTTATGGGTTAACT
AGTCACATGAGTTTTTGACGTGTCATGGATGTTCCTGGCGTGTTG
Found at i:6851324 original size:23 final size:23
Alignment explanation
Indices: 6851272--6851327 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
6851262 GTTTTTGGCG
* * *
6851272 TGTCACAACAATGATGCATGACG
1 TGTCACGACAATGAGGCATGACA
* *
6851295 TGTCACGACACTGAGGCATGTCA
1 TGTCACGACAATGAGGCATGACA
6851318 TGTCACGACA
1 TGTCACGACA
6851328 TTTGACTTGA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.21
Consensus pattern (23 bp):
TGTCACGACAATGAGGCATGACA
Found at i:6854733 original size:81 final size:81
Alignment explanation
Indices: 6854595--6854744 Score: 196
Period size: 81 Copynumber: 1.9 Consensus size: 81
6854585 ATCAGATGAT
* *
6854595 GCTGAAGGAGTCCATGTTCCTCAAGTTGATTTGGTTATTGATGCATCTACAAGAGGGG-GAAGGG
1 GCTGAAGGAGTCCATGTTCCTCAAGTTGATTCGGTTATCGATGCATCTACAAGAGGGGAG-AGGG
6854659 ACCTTCACTCGCTCGTG
65 ACCTTCACTCGCTCGTG
* * * * * *
6854676 GCTGAAGTAGTCCATGTTCCTTAGGTTGATTCGTTTATCGATGCATCTGC-GGTAGGGGAGAGGG
1 GCTGAAGGAGTCCATGTTCCTCAAGTTGATTCGGTTATCGATGCATCTACAAG-AGGGGAGAGGG
6854740 ACCTT
65 ACCTT
6854745 TAGTCAATCG
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
80 1 0.02
81 57 0.97
82 1 0.02
ACGTcount: A:0.21, C:0.19, G:0.31, T:0.30
Consensus pattern (81 bp):
GCTGAAGGAGTCCATGTTCCTCAAGTTGATTCGGTTATCGATGCATCTACAAGAGGGGAGAGGGA
CCTTCACTCGCTCGTG
Found at i:6854756 original size:81 final size:81
Alignment explanation
Indices: 6854595--6854765 Score: 193
Period size: 81 Copynumber: 2.1 Consensus size: 81
6854585 ATCAGATGAT
* *
6854595 GCTGAAGGAGTCCATGTTCCTCAAGTTGATTTGGTTATTGATGCATCTACAAGAGGGGGAAGGGA
1 GCTGAAGGAGTCCATGTTCCTCAAGTTGATTCGGTTATCGATGCATCTACAAGAGGGGGAAGGGA
**
6854660 CCTTCACTCGCTCGTG
66 CCTTCACTCAATCGTG
* * * * * *
6854676 GCTGAAGTAGTCCATGTTCCTTAGGTTGATTCGTTTATCGATGCATCTGC-GGTA-GGGGAGAGG
1 GCTGAAGGAGTCCATGTTCCTCAAGTTGATTCGGTTATCGATGCATCTACAAG-AGGGGGA-AGG
* *
6854739 GACCTTTAGTCAATCGTG
64 GACCTTCACTCAATCGTG
*
6854757 GTTGAAGGA
1 GCTGAAGGA
6854766 CAGCATTTTC
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
80 6 0.08
81 68 0.92
ACGTcount: A:0.22, C:0.18, G:0.31, T:0.30
Consensus pattern (81 bp):
GCTGAAGGAGTCCATGTTCCTCAAGTTGATTCGGTTATCGATGCATCTACAAGAGGGGGAAGGGA
CCTTCACTCAATCGTG
Found at i:6856440 original size:53 final size:53
Alignment explanation
Indices: 6856352--6856469 Score: 182
Period size: 53 Copynumber: 2.2 Consensus size: 53
6856342 ATTAACTCAG
* *
6856352 CGTGTCACGCCAAGTATGCATGCACTTAGCATGTCACCACAATTGGCCCATGC
1 CGTGTCACCCCAAGTATGCATGCACTCAGCATGTCACCACAATTGGCCCATGC
* * *
6856405 CGTGTCACCCCAAGTCTGCATGCACTCAGCGTGTCACCACAATTGGCCCATGT
1 CGTGTCACCCCAAGTATGCATGCACTCAGCATGTCACCACAATTGGCCCATGC
*
6856458 CGTGTCGCCCCA
1 CGTGTCACCCCA
6856470 CAAGACTGCA
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
53 59 1.00
ACGTcount: A:0.21, C:0.36, G:0.21, T:0.22
Consensus pattern (53 bp):
CGTGTCACCCCAAGTATGCATGCACTCAGCATGTCACCACAATTGGCCCATGC
Found at i:6856527 original size:168 final size:169
Alignment explanation
Indices: 6856239--6856585 Score: 441
Period size: 168 Copynumber: 2.1 Consensus size: 169
6856229 CAATTTGGCT
* * *
6856239 TGTCACGCCAAGTCTGCATGCACTCAGTCTGTCACCATAATTGGCCTCTGCCGTGTCACCTGCCA
1 TGTCACCCCAAGTCTGCATGCACTCAGTCTGTCACCACAATTGGCCTCTGCCGTGTCACCTCCCA
* * * *
6856304 AGACTAAAAGAAGTTAGTGTGTCATGCCATAAGTCTGAATTAACTCAGCGTGTCACGCC-AAGTA
66 AGACTAAAACAAGTCAGCGTGTCATGCCATAAGTCTGAATTAACTCAACGTGTCACGCCAAAGTA
* *
6856368 TGCATGCACTTAGCATGTCACCACAATTGGCCCATGCCG
131 TGCATGCACTCAGCATGTCACCACAATTGGCCCATACCG
* *
6856407 TGTCACCCCAAGTCTGCATGCACTCAG-CGTGTCACCACAATTGGCC-CATGTCGTGTCGCC-CC
1 TGTCACCCCAAGTCTGCATGCACTCAGTC-TGTCACCACAATTGGCCTC-TGCCGTGTCACCTCC
** * * *
6856469 ACAAGACTGCAACAAGTCAGCGTGTCATGCCATAAGTTTGCATTAACTCAATGTGTCACGCCATA
64 -CAAGACTAAAACAAGTCAGCGTGTCATGCCATAAGTCTGAATTAACTCAACGTGTCACGCCA-A
** * * *
6856534 AGTATGGTTGCACTCAGCGTGTCACCATAATTGGCCCCTACCG
127 AGTATGCATGCACTCAGCATGTCACCACAATTGGCCCATACCG
6856577 TGTCACCCC
1 TGTCACCCC
6856586 CCACAAGACT
Statistics
Matches: 153, Mismatches: 21, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
167 3 0.02
168 104 0.68
170 46 0.30
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.24
Consensus pattern (169 bp):
TGTCACCCCAAGTCTGCATGCACTCAGTCTGTCACCACAATTGGCCTCTGCCGTGTCACCTCCCA
AGACTAAAACAAGTCAGCGTGTCATGCCATAAGTCTGAATTAACTCAACGTGTCACGCCAAAGTA
TGCATGCACTCAGCATGTCACCACAATTGGCCCATACCG
Found at i:6856641 original size:119 final size:117
Alignment explanation
Indices: 6856425--6856646 Score: 338
Period size: 119 Copynumber: 1.9 Consensus size: 117
6856415 CAAGTCTGCA
** *
6856425 TGCACTCAGCGTGTCACCACAATTGGCCCATGTCGTGTCGCCCCACAAGACTGCAACAAGTCAGC
1 TGCACTCAGCGTGTCACCACAATTGGCCCATACCGTGTCCCCCCACAAGACTGCAACAAGTCAGC
* *
6856490 GTGTCATGCCATAAGTTTGCATTAACTCAATGTGTCACGCCATAAGTATGGT
66 GTGTCACGCCATAAGTCTGCATTAACTCAATGTGTCACGCCATAAGTATGGT
* *
6856542 TGCACTCAGCGTGTCACCATAATTGGCCCCTACCGTGTCACCCCCCACAAGACTGCAACAAGTCA
1 TGCACTCAGCGTGTCACCACAATTGGCCCATACCGTGT--CCCCCCACAAGACTGCAACAAGTCA
*
6856607 GCGTGTCACGCCATAAGTCTGC-TTACACTTAATGTGTCAC
64 GCGTGTCACGCCATAAGTCTGCATTA-ACTCAATGTGTCAC
6856647 CATAATTAGC
Statistics
Matches: 94, Mismatches: 8, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
117 34 0.36
118 3 0.03
119 57 0.61
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (117 bp):
TGCACTCAGCGTGTCACCACAATTGGCCCATACCGTGTCCCCCCACAAGACTGCAACAAGTCAGC
GTGTCACGCCATAAGTCTGCATTAACTCAATGTGTCACGCCATAAGTATGGT
Found at i:6856712 original size:86 final size:87
Alignment explanation
Indices: 6856516--6856732 Score: 276
Period size: 88 Copynumber: 2.5 Consensus size: 87
6856506 TTGCATTAAC
* * * * * * *
6856516 TCAATGTGTCACGCCATAAGTATGGTTGCACTCAGCGTGTCACCATAATTGGCCCCTACCGTGTC
1 TCAACGTGTCACGCCATAAGTCTGCTTACACTTAACGTGTCACCATAATTAGCCCCTACCGTGTC
6856581 ACCCCCCACAAGACTGCAACAAG
66 A-CCCCCACAAGACTGCAACAAG
* * *
6856604 TCAGCGTGTCACGCCATAAGTCTGCTTACACTTAATGTGTCACCATAATTAGCCCTTACCGTGTC
1 TCAACGTGTCACGCCATAAGTCTGCTTACACTTAACGTGTCACCATAATTAGCCCCTACCGTGTC
*
6856669 A-CCCCATAAGACTGCAACAAG
66 ACCCCCACAAGACTGCAACAAG
* * *
6856690 TCAACGTGTCACGCTATAAGTCTGCATTA-ACTTAGCATGTCAC
1 TCAACGTGTCACGCCATAAGTCTGC-TTACACTTAACGTGTCAC
6856733 GCCATAAGTC
Statistics
Matches: 112, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
86 53 0.47
87 3 0.03
88 56 0.50
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (87 bp):
TCAACGTGTCACGCCATAAGTCTGCTTACACTTAACGTGTCACCATAATTAGCCCCTACCGTGTC
ACCCCCACAAGACTGCAACAAG
Found at i:6856738 original size:88 final size:87
Alignment explanation
Indices: 6856556--6856739 Score: 246
Period size: 86 Copynumber: 2.1 Consensus size: 87
6856546 CTCAGCGTGT
* *
6856556 CACCATAATTGGCCCCTACCGTGTCACCCCCCACAAGACTGCAACAAGTCAGCGTGTCACGCCAT
1 CACCATAATTAGCCCCTACCGTGTCA-CCCCCACAAGACTGCAACAAGTCAACGTGTCACGCCAT
**
6856621 AAGTCTGCTTACACTTAATGTGT
65 AAGTCTGCTTACACTTAATGTCA
* * *
6856644 CACCATAATTAGCCCTTACCGTGTCA-CCCCATAAGACTGCAACAAGTCAACGTGTCACGCTATA
1 CACCATAATTAGCCCCTACCGTGTCACCCCCACAAGACTGCAACAAGTCAACGTGTCACGCCATA
6856708 AGTCTGCATTA-ACTTAGCATGTCA
66 AGTCTGC-TTACACTTA--ATGTCA
*
6856732 CGCCATAA
1 CACCATAA
6856740 GTCTGCTTGC
Statistics
Matches: 85, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
86 47 0.55
87 3 0.04
88 35 0.41
ACGTcount: A:0.29, C:0.32, G:0.16, T:0.23
Consensus pattern (87 bp):
CACCATAATTAGCCCCTACCGTGTCACCCCCACAAGACTGCAACAAGTCAACGTGTCACGCCATA
AGTCTGCTTACACTTAATGTCA
Found at i:6856742 original size:117 final size:117
Alignment explanation
Indices: 6856610--6856831 Score: 336
Period size: 117 Copynumber: 1.9 Consensus size: 117
6856600 CAAGTCAGCG
* ** *
6856610 TGTCACGCCATAAGTCTGCTTACACTTAATGTGTCACCATAATTAGCCCTTACCGTGTCACCCCA
1 TGTCACGCCATAAGTCTGCTTACACTCAACATGTCACCACAATTAGCCCTTACCGTGTCACCCCA
* *
6856675 TAAGACTGCAACAAGTCAACGTGTCACGCTATAAGTCTGCATTAACTTAGCA
66 CAAGACTGCAACAAGTCAACGTGTCACGCCATAAGTCTGCATTAACTTAGCA
* * * * *
6856727 TGTCACGCCATAAGTCTGCTTGCACTCAACATGTCACCACAATTGGCTCTTGCCGTGTCATCCCA
1 TGTCACGCCATAAGTCTGCTTACACTCAACATGTCACCACAATTAGCCCTTACCGTGTCACCCCA
*
6856792 CAAGACTGCAACAAGTCAGCGTGTCACGCCATAAGTCTGC
66 CAAGACTGCAACAAGTCAACGTGTCACGCCATAAGTCTGC
6856832 TTGCACTCAA
Statistics
Matches: 93, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
117 93 1.00
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (117 bp):
TGTCACGCCATAAGTCTGCTTACACTCAACATGTCACCACAATTAGCCCTTACCGTGTCACCCCA
CAAGACTGCAACAAGTCAACGTGTCACGCCATAAGTCTGCATTAACTTAGCA
Found at i:6856760 original size:31 final size:31
Alignment explanation
Indices: 6856665--6856763 Score: 92
Period size: 31 Copynumber: 3.2 Consensus size: 31
6856655 GCCCTTACCG
* * ** * *
6856665 TGTCACCCCATAAGACTGCAACAAGTCAACG
1 TGTCACGCCATAAGTCTGCATTAACTCAACA
* * *
6856696 TGTCACGCTATAAGTCTGCATTAACTTAGCA
1 TGTCACGCCATAAGTCTGCATTAACTCAACA
*
6856727 TGTCACGCCATAAGTCTGC-TTGCACTCAACA
1 TGTCACGCCATAAGTCTGCATT-AACTCAACA
6856758 TGTCAC
1 TGTCAC
6856764 CACAATTGGC
Statistics
Matches: 54, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
30 2 0.04
31 52 0.96
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (31 bp):
TGTCACGCCATAAGTCTGCATTAACTCAACA
Found at i:6856784 original size:86 final size:85
Alignment explanation
Indices: 6856727--6857003 Score: 464
Period size: 86 Copynumber: 3.2 Consensus size: 85
6856717 TAACTTAGCA
* *
6856727 TGTCACGCCATAAGTCTGCTTGCACTCAACATGTCACCACAATTGGCTCTTGCCGTGTCATCCCA
1 TGTCACGCCATAAGTCTGCTTGCACTCAACGTGTCACCACAATTGGCTCCTGCCGTGTCA-CCCA
6856792 CAAGACTGCAACAAGTCAGCG
65 CAAGACTGCAACAAGTCAGCG
6856813 TGTCACGCCATAAGTCTGCTTGCACTCAACGTGTCACCACAATTGGCTCCTGCCGTGTCACCCCA
1 TGTCACGCCATAAGTCTGCTTGCACTCAACGTGTCACCACAATTGGCTCCTGCCGTGTCA-CCCA
*
6856878 CAAGACTGTAACAAGTCAGCG
65 CAAGACTGCAACAAGTCAGCG
* * *
6856899 TGTCACGCCATAAGTTTGCTTGCACTCAACGTGCCACCACAATTGGCCCCTGCCGTGTCATCCCA
1 TGTCACGCCATAAGTCTGCTTGCACTCAACGTGTCACCACAATTGGCTCCTGCCGTGTCA-CCCA
*
6856964 CAAGATTGCAACAAGTCAGCG
65 CAAGACTGCAACAAGTCAGCG
6856985 TGTCACGCCATAAGTCTGC
1 TGTCACGCCATAAGTCTGC
6857004 ATTAACTTAG
Statistics
Matches: 180, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
86 180 1.00
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (85 bp):
TGTCACGCCATAAGTCTGCTTGCACTCAACGTGTCACCACAATTGGCTCCTGCCGTGTCACCCAC
AAGACTGCAACAAGTCAGCG
Found at i:6856893 original size:203 final size:201
Alignment explanation
Indices: 6856416--6857154 Score: 784
Period size: 203 Copynumber: 3.6 Consensus size: 201
6856406 GTGTCACCCC
* * * * *
6856416 AAGTCTGCATGCACTCAGCGTGTCACCACAATTGGCCCATGTCGTGTCGCCCCACAAGACTGCAA
1 AAGTCTGCTTGCACTCAACGTGTCACCACAATTGGCCCTTGCCGTGTCACCCCACAAGACTGCAA
* * * * *
6856481 CAAGTCAGCGTGTCATGCCATAAGTTTGCATTAACTCAATGTGTCACGCCATAAGTATGGTTGCA
66 CAAGTCAGCGTGTCACGCCATAAGTCTGCATTAACTCAACGTGTCACGCCATAAGTCTGCTTGCA
* * * *
6856546 CTCAGCGTGTCACCATAATTGGCCCCTACCGTGTCACCCCCCACAAGACTGCAACAAGTCAGCGT
131 CTCA-CGTGTCACCACAATTGGCACATGCCGTGTCA---CCCACAAGACTGCAACAAGTCAGCGT
6856611 GTCACGCCAT
192 GTCACGCCAT
* * * * * * *
6856621 AAGTCTGCTTACACTTAATGTGTCACCATAATTAGCCCTTACCGTGTCACCCCATAAGACTGCAA
1 AAGTCTGCTTGCACTCAACGTGTCACCACAATTGGCCCTTGCCGTGTCACCCCACAAGACTGCAA
* * * * *
6856686 CAAGTCAACGTGTCACGCTATAAGTCTGCATTAACTTAGCATGTCACGCCATAAGTCTGCTTGCA
66 CAAGTCAGCGTGTCACGCCATAAGTCTGCATTAACTCAACGTGTCACGCCATAAGTCTGCTTGCA
* * *
6856751 CTCAACATGTCACCACAATTGGCTCTTGCCGTGTCATCCCACAAGACTGCAACAAGTCAGCGTGT
131 CTC-ACGTGTCACCACAATTGGCACATGCCGTGTCA-CCCACAAGACTGCAACAAGTCAGCGTGT
6856816 CACGCCAT
194 CACGCCAT
*
6856824 AAGTCTGCTTGCACTCAACGTGTCACCACAATTGGCTCC-TGCCGTGTCACCCCACAAGACTGTA
1 AAGTCTGCTTGCACTCAACGTGTCACCACAATTGGC-CCTTGCCGTGTCACCCCACAAGACTGCA
* * * *
6856888 ACAAGTCAGCGTGTCACGCCATAAGTTTGC-TTGCACTCAACGTG-C-CACCACAA-T-TG---G
65 ACAAGTCAGCGTGTCACGCCATAAGTCTGCATT-AACTCAACGTGTCACGCCATAAGTCTGCTTG
* * * * **
6856945 CCCCTGC-CGTGTCATCCCACAAGATT-GCAACAAGTCAGCGTGTCACGCCATAAGTCTGCATTA
129 -CACT-CACGTGTCA--CCAC-A-ATTGGC-ACATG-C--CGTGTCAC-CCACAAGACTGCAACA
* *
6857008 ACTTAGCGTGTCACGCCAT
183 AGTCAGCGTGTCACGCCAT
* *
6857027 AAGTTTGCTTGCACTCAACGTGTCACCATAATTGGCCCTTGCCGTGTCACCCCACAAGACTGCAA
1 AAGTCTGCTTGCACTCAACGTGTCACCACAATTGGCCCTTGCCGTGTCACCCCACAAGACTGCAA
* * * *
6857092 CAAGTCAGCGTGTCATGCCATAAATCTGCATTAACTCAGCGTGTCACGCC--AAGTCTGCATGCA
66 CAAGTCAGCGTGTCACGCCATAAGTCTGCATTAACTCAACGTGTCACGCCATAAGTCTGCTTGCA
6857155 TTCAGCGTAA
Statistics
Matches: 445, Mismatches: 66, Indels: 44
0.80 0.12 0.08
Matches are distributed among these distances:
196 7 0.02
197 3 0.01
198 5 0.01
199 5 0.01
200 6 0.01
201 7 0.02
202 6 0.01
203 255 0.57
204 6 0.01
205 142 0.32
206 1 0.00
207 1 0.00
208 1 0.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (201 bp):
AAGTCTGCTTGCACTCAACGTGTCACCACAATTGGCCCTTGCCGTGTCACCCCACAAGACTGCAA
CAAGTCAGCGTGTCACGCCATAAGTCTGCATTAACTCAACGTGTCACGCCATAAGTCTGCTTGCA
CTCACGTGTCACCACAATTGGCACATGCCGTGTCACCCACAAGACTGCAACAAGTCAGCGTGTCA
CGCCAT
Found at i:6857049 original size:31 final size:31
Alignment explanation
Indices: 6856983--6857052 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
6856973 AACAAGTCAG
* *
6856983 CGTGTCACGCCATAAGTCTGCATTAACTTAG
1 CGTGTCACGCCATAAGTCTGCATTAACTCAA
* *
6857014 CGTGTCACGCCATAAGTTTGC-TTGCACTCAA
1 CGTGTCACGCCATAAGTCTGCATT-AACTCAA
6857045 CGTGTCAC
1 CGTGTCAC
6857053 CATAATTGGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
30 2 0.06
31 32 0.94
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.29
Consensus pattern (31 bp):
CGTGTCACGCCATAAGTCTGCATTAACTCAA
Found at i:6857072 original size:117 final size:117
Alignment explanation
Indices: 6856893--6857142 Score: 428
Period size: 117 Copynumber: 2.1 Consensus size: 117
6856883 CTGTAACAAG
6856893 TCAGCGTGTCACGCCATAAGTTTGCTTGCACTCAACGTGCCACCACAATTGGCCCCTGCCGTGTC
1 TCAGCGTGTCACGCCATAAGTTTGCTTGCACTCAACGTGCCACCACAATTGGCCCCTGCCGTGTC
* * *
6856958 ATCCCACAAGATTGCAACAAGTCAGCGTGTCACGCCATAAGTCTGCATTAAC
66 ACCCCACAAGACTGCAACAAGTCAGCGTGTCACGCCATAAATCTGCATTAAC
* * * *
6857010 TTAGCGTGTCACGCCATAAGTTTGCTTGCACTCAACGTGTCACCATAATTGGCCCTTGCCGTGTC
1 TCAGCGTGTCACGCCATAAGTTTGCTTGCACTCAACGTGCCACCACAATTGGCCCCTGCCGTGTC
*
6857075 ACCCCACAAGACTGCAACAAGTCAGCGTGTCATGCCATAAATCTGCATTAAC
66 ACCCCACAAGACTGCAACAAGTCAGCGTGTCACGCCATAAATCTGCATTAAC
6857127 TCAGCGTGTCACGCCA
1 TCAGCGTGTCACGCCA
6857143 AGTCTGCATG
Statistics
Matches: 124, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
117 124 1.00
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.24
Consensus pattern (117 bp):
TCAGCGTGTCACGCCATAAGTTTGCTTGCACTCAACGTGCCACCACAATTGGCCCCTGCCGTGTC
ACCCCACAAGACTGCAACAAGTCAGCGTGTCACGCCATAAATCTGCATTAAC
Found at i:6858109 original size:15 final size:14
Alignment explanation
Indices: 6858065--6858112 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 14
6858055 ATACATTTTT
6858065 TAAATTAA-AAATA
1 TAAATTAATAAATA
**
6858078 TAAATTAATGACTTA
1 TAAATTAAT-AAATA
6858093 TAAATTATATAAATA
1 TAAATTA-ATAAATA
6858108 TAAAT
1 TAAAT
6858113 AGAAGTGCTT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
13 8 0.29
15 18 0.64
16 2 0.07
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (14 bp):
TAAATTAATAAATA
Found at i:6861793 original size:31 final size:31
Alignment explanation
Indices: 6861750--6862523 Score: 955
Period size: 31 Copynumber: 24.8 Consensus size: 31
6861740 TTTGTTAGTC
*
6861750 ATGTTGTTACACGCCATGCATATAACGTAAA
1 ATGTTGTAACACGCCATGCATATAACGTAAA
6861781 ATGTTGTAACACGCCATGCATATAACGTAAA
1 ATGTTGTAACACGCCATGCATATAACGTAAA
* *
6861812 ATGTGGTAACACGCCATGCATATAACATAAA
1 ATGTTGTAACACGCCATGCATATAACGTAAA
* * * *
6861843 ATGTCGTAACACGTCATGCATTTAACGAAAA
1 ATGTTGTAACACGCCATGCATATAACGTAAA
* * *
6861874 ATATGGTAACACGCCATGCATATAACATAAA
1 ATGTTGTAACACGCCATGCATATAACGTAAA
* * *
6861905 ATATGGTAACACGCCATGCATATAACGTTAA
1 ATGTTGTAACACGCCATGCATATAACGTAAA
6861936 ATGTTGTAACACGCCATGCATATAACGTAAA
1 ATGTTGTAACACGCCATGCATATAACGTAAA
* * *
6861967 ATGTGGTAACACATGCCATGCATATAACATTAA
1 ATGTTGTAACAC--GCCATGCATATAACGTAAA
* *
6862000 A---T-TAACAAGCCATGCATATAACGTTAA
1 ATGTTGTAACACGCCATGCATATAACGTAAA
* *
6862027 ATGTT-TAACACGCCATGCATAAAACATAAA
1 ATGTTGTAACACGCCATGCATATAACGTAAA
* * * *
6862057 ATGTGGTAACATGTCATGCATATAACATAAA
1 ATGTTGTAACACGCCATGCATATAACGTAAA
* * *
6862088 ATGTTGTAACACGCCATGCAAATAGCATAAA
1 ATGTTGTAACACGCCATGCATATAACGTAAA
* ** *
6862119 ATGTGGTAACACATCATGCATATAATGTAAA
1 ATGTTGTAACACGCCATGCATATAACGTAAA
* *
6862150 ATGTGGTAACACGCCATGCATATAGCGTAAA
1 ATGTTGTAACACGCCATGCATATAACGTAAA
* *
6862181 ATGTGGTAACAAGTAACATGCTATGCATATAACGTAAA
1 ATGT--T-----GTAACACGCCATGCATATAACGTAAA
*
6862219 ATATTGTAACACGCCATGCATATAACGTAAA
1 ATGTTGTAACACGCCATGCATATAACGTAAA
* *
6862250 ATGTTGTAACACGCCATGCAAATAGCGTAAA
1 ATGTTGTAACACGCCATGCATATAACGTAAA
* *
6862281 ATGTGGTAACATGCCATGCATATAACGTAAA
1 ATGTTGTAACACGCCATGCATATAACGTAAA
* * *
6862312 ATGTTTTTACACGCCATGCATATAACGAAAA
1 ATGTTGTAACACGCCATGCATATAACGTAAA
6862343 ATGTTGTAACACGCCATGCATATAACGTAAA
1 ATGTTGTAACACGCCATGCATATAACGTAAA
* ** *
6862374 ATGTGGTAACACATCATGCATATAACATAAA
1 ATGTTGTAACACGCCATGCATATAACGTAAA
*
6862405 ATGTTGTAACACGCCATGCATATAGCGTAAA
1 ATGTTGTAACACGCCATGCATATAACGTAAA
* *
6862436 ATGTGGTAACACGCCATGCATATAGCGTAAA
1 ATGTTGTAACACGCCATGCATATAACGTAAA
* * *
6862467 ATGTGGTAACACACCATGCATATAACGTTAA
1 ATGTTGTAACACGCCATGCATATAACGTAAA
6862498 ATGTTGTAACACGCCATGCATATAAC
1 ATGTTGTAACACGCCATGCATATAAC
6862524 CAATGTCGTG
Statistics
Matches: 644, Mismatches: 86, Indels: 26
0.85 0.11 0.03
Matches are distributed among these distances:
27 19 0.03
29 5 0.01
30 26 0.04
31 549 0.85
33 18 0.03
36 1 0.00
38 26 0.04
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.26
Consensus pattern (31 bp):
ATGTTGTAACACGCCATGCATATAACGTAAA
Found at i:6864052 original size:22 final size:21
Alignment explanation
Indices: 6864009--6864052 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
6863999 ATAAAAATCT
*
6864009 ATTTGATTAAAAAAATACAAA
1 ATTTGATTAAAAAAATAAAAA
* *
6864030 ATTTGATTGAACATAATAAAAA
1 ATTTGATT-AAAAAAATAAAAA
6864052 A
1 A
6864053 ATAAAAATCT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.59, C:0.05, G:0.07, T:0.30
Consensus pattern (21 bp):
ATTTGATTAAAAAAATAAAAA
Found at i:6867552 original size:29 final size:29
Alignment explanation
Indices: 6867508--6867563 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
6867498 AAATTGCAGA
*
6867508 ATTTGACAGCTTAAGTAATCCTCAACAAG
1 ATTTGACAGCTCAAGTAATCCTCAACAAG
6867537 ATTTGACAGCTCAAGTAATCCTCAACA
1 ATTTGACAGCTCAAGTAATCCTCAACA
6867564 GGGAAGAAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.38, C:0.23, G:0.12, T:0.27
Consensus pattern (29 bp):
ATTTGACAGCTCAAGTAATCCTCAACAAG
Found at i:6869382 original size:40 final size:40
Alignment explanation
Indices: 6869308--6869383 Score: 93
Period size: 40 Copynumber: 1.9 Consensus size: 40
6869298 TAGCATTATT
*
6869308 CATACACATAATTTAATTAATTTGTTTTATAATTCTAAAC
1 CATACACATAATTTAATTAATTTGTTTTACAATTCTAAAC
* *
6869348 CATACA-ATAA-TTGATTAGTTTAGTTTTAACAATTCT
1 CATACACATAATTTAATTAATTT-GTTTT-ACAATTCT
6869384 GTAAACAGCT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
38 9 0.29
39 9 0.29
40 13 0.42
ACGTcount: A:0.38, C:0.12, G:0.05, T:0.45
Consensus pattern (40 bp):
CATACACATAATTTAATTAATTTGTTTTACAATTCTAAAC
Found at i:6873442 original size:15 final size:16
Alignment explanation
Indices: 6873422--6873451 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
6873412 TACATTGATT
6873422 ATAAAAAATT-TATAA
1 ATAAAAAATTATATAA
6873437 ATAAAAAATTATATA
1 ATAAAAAATTATATA
6873452 TGTAACTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
ATAAAAAATTATATAA
Found at i:6878625 original size:12 final size:11
Alignment explanation
Indices: 6878608--6878639 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
6878598 TAAAAGCAAA
*
6878608 TTAAAAAGAGT
1 TTAAAAAGAAT
6878619 TTAAAAAGAAT
1 TTAAAAAGAAT
6878630 TTAAAAAGAA
1 TTAAAAAGAA
6878640 CTGTTTTGAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.62, C:0.00, G:0.12, T:0.25
Consensus pattern (11 bp):
TTAAAAAGAAT
Found at i:6887384 original size:84 final size:86
Alignment explanation
Indices: 6887296--6887490 Score: 229
Period size: 84 Copynumber: 2.3 Consensus size: 86
6887286 TGTTTCTTGG
* * * * *
6887296 AGGTATTCAGAATACTACTTGTAATGCTT-TTTCTTTTTCTAG-AAGTATTTAGAATATTACTTG
1 AGGTATTCAGAATACTACTTGAAATGCTTGCTTC-TTCTCTAGTAAGTATTTAGAATAATACTCG
6887359 CAATCCTTCTTCTTCTCTT-AA
65 CAATCCTTCTTCTTCTCTTGAA
* * *
6887380 AGGTATTCAGCATAATACTTGAAATG-TTGCTTCTTCTCTTGTAAGTATTTAGAATAATACTCGC
1 AGGTATTCAGAATACTACTTGAAATGCTTGCTTCTTCTCTAGTAAGTATTTAGAATAATACTCGC
** *
6887444 AATGTTTCTTCTTCTCTTGGA
66 AATCCTTCTTCTTCTCTTGAA
* *
6887465 A-TTATTGAGAATACTACTTGAAATGC
1 AGGTATTCAGAATACTACTTGAAATGC
6887491 CCTTTTTTTT
Statistics
Matches: 92, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
83 8 0.09
84 82 0.89
85 2 0.02
ACGTcount: A:0.28, C:0.16, G:0.13, T:0.43
Consensus pattern (86 bp):
AGGTATTCAGAATACTACTTGAAATGCTTGCTTCTTCTCTAGTAAGTATTTAGAATAATACTCGC
AATCCTTCTTCTTCTCTTGAA
Found at i:6887386 original size:42 final size:41
Alignment explanation
Indices: 6887298--6887490 Score: 156
Period size: 42 Copynumber: 4.6 Consensus size: 41
6887288 TTTCTTGGAG
* * * *
6887298 GTATTCAGAATACTACTTGTAATGCTTTTTCTT-TTTCTAGAA
1 GTATTCAGAATAATACTTGCAATGCTTCTTCTTCTCT-TA-AA
* * *
6887340 GTATTTAGAATATTACTTGCAATCCTTCTTCTTCTCTTAAA
1 GTATTCAGAATAATACTTGCAATGCTTCTTCTTCTCTTAAA
* * *
6887381 GGTATTCAGCATAATACTTGAAATG-TTGCTTCTTCTCTTGTAA
1 -GTATTCAGAATAATACTTGCAATGCTT-CTTCTTCTCTT-AAA
* * * *
6887424 GTATTTAGAATAATACTCGCAATGTTTCTTCTTCTCTTGGAA
1 GTATTCAGAATAATACTTGCAATGCTTCTTCTTCTCTT-AAA
* * * *
6887466 TTATTGAGAATACTACTTGAAATGC
1 GTATTCAGAATAATACTTGCAATGC
6887491 CCTTTTTTTT
Statistics
Matches: 123, Mismatches: 23, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
41 4 0.03
42 113 0.92
43 6 0.05
ACGTcount: A:0.27, C:0.16, G:0.13, T:0.44
Consensus pattern (41 bp):
GTATTCAGAATAATACTTGCAATGCTTCTTCTTCTCTTAAA
Found at i:6895144 original size:35 final size:35
Alignment explanation
Indices: 6895105--6895208 Score: 120
Period size: 35 Copynumber: 3.0 Consensus size: 35
6895095 AGTAAAATAG
* *
6895105 CTAGAACAAGCGAAGCACTACTTAATATAGAACAA
1 CTAGAACAAGTGAAGCACTACTTCATATAGAACAA
* * *
6895140 CTAGAACAAGTGAAACACTACTTCACACAGAACAA
1 CTAGAACAAGTGAAGCACTACTTCATATAGAACAA
* * *
6895175 TTAGAGCAAGTTG-AGCACTACTTCATGTAGAACA
1 CTAGAACAAG-TGAAGCACTACTTCATATAGAACA
6895209 TCTAACACAC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
35 55 0.96
36 2 0.04
ACGTcount: A:0.44, C:0.21, G:0.15, T:0.19
Consensus pattern (35 bp):
CTAGAACAAGTGAAGCACTACTTCATATAGAACAA
Found at i:6897841 original size:96 final size:97
Alignment explanation
Indices: 6897677--6897870 Score: 327
Period size: 96 Copynumber: 2.0 Consensus size: 97
6897667 CTTTCAGCTA
* * *
6897677 GAACATAAATCATAAATTTAAAACATCATGCTCACAACTCTAGAAGCAACACTTAAATCCAAAAA
1 GAACATAAAACATAAATTTAAAACATCACGCTCACAAATCTAGAAGCAACACTTAAATCCAAAAA
*
6897742 AT-AAAATAAAATAAAAGCTAACAAATATGGT
66 ATAAAAATAAAATAAAAGCGAACAAATATGGT
*
6897773 GAACATAAAACATAAATTTAAAACATCACGCTCACAAATCTAGAAGCAACACTTAAATCCATAAA
1 GAACATAAAACATAAATTTAAAACATCACGCTCACAAATCTAGAAGCAACACTTAAATCCAAAAA
6897838 ATAAAAAATAAAATAAAAGCGAACAAATATGGT
66 AT-AAAAATAAAATAAAAGCGAACAAATATGGT
6897871 AAGGTTAGGG
Statistics
Matches: 91, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
96 63 0.69
98 28 0.31
ACGTcount: A:0.55, C:0.16, G:0.08, T:0.21
Consensus pattern (97 bp):
GAACATAAAACATAAATTTAAAACATCACGCTCACAAATCTAGAAGCAACACTTAAATCCAAAAA
ATAAAAATAAAATAAAAGCGAACAAATATGGT
Found at i:6900975 original size:48 final size:48
Alignment explanation
Indices: 6900898--6901010 Score: 154
Period size: 48 Copynumber: 2.4 Consensus size: 48
6900888 GCCCATGATG
* * * *
6900898 TTAAACAAAGAACAAAAAATAATATAGCAGCAAACTAAGGCCAAGACA
1 TTAAACAAAGAACAAAAAATAAGACAGCAGCAAACTAAGCCCAAAACA
*
6900946 TTAAACAAAGAACAAAAAATAAGACAGCAGTAAACTAAGCCCAAAACA
1 TTAAACAAAGAACAAAAAATAAGACAGCAGCAAACTAAGCCCAAAACA
* * *
6900994 TCATACAATGAACAAAA
1 TTAAACAAAGAACAAAA
6901011 GAAAAGGGCA
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 57 1.00
ACGTcount: A:0.59, C:0.18, G:0.11, T:0.12
Consensus pattern (48 bp):
TTAAACAAAGAACAAAAAATAAGACAGCAGCAAACTAAGCCCAAAACA
Found at i:6912919 original size:22 final size:22
Alignment explanation
Indices: 6912885--6912929 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
6912875 ACATCCAACA
*
6912885 AAATAGCAAATAAATAGGAACT
1 AAATAGCAAATAAATAAGAACT
* * *
6912907 AAATAGTAGATAAGTAAGAACT
1 AAATAGCAAATAAATAAGAACT
6912929 A
1 A
6912930 CTCCTACTAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.58, C:0.07, G:0.16, T:0.20
Consensus pattern (22 bp):
AAATAGCAAATAAATAAGAACT
Found at i:6913560 original size:35 final size:34
Alignment explanation
Indices: 6913487--6913562 Score: 82
Period size: 35 Copynumber: 2.2 Consensus size: 34
6913477 TGATCATGCG
* *
6913487 TAACCTTACAACATGTCTTTTGCTAGATCAAACG
1 TAACCTTACAACATATCTTTTGCTAGATCAAACA
* * *
6913521 TAACCTTCATAACATATCTTTTG-TAGGATTAAGCA
1 TAACCTT-ACAACATATCTTTTGCTA-GATCAAACA
6913556 TAACCTT
1 TAACCTT
6913563 TATTAAAACA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
34 9 0.26
35 26 0.74
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.36
Consensus pattern (34 bp):
TAACCTTACAACATATCTTTTGCTAGATCAAACA
Found at i:6927268 original size:12 final size:12
Alignment explanation
Indices: 6927251--6927275 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
6927241 TCAAGTCATT
6927251 CAAGAAAGTGTG
1 CAAGAAAGTGTG
6927263 CAAGAAAGTGTG
1 CAAGAAAGTGTG
6927275 C
1 C
6927276 GGGCTAGGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.12, G:0.32, T:0.16
Consensus pattern (12 bp):
CAAGAAAGTGTG
Found at i:6929358 original size:2 final size:2
Alignment explanation
Indices: 6929351--6929387 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
6929341 NNNNNNNNNN
6929351 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6929388 AAAACACGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:6943723 original size:2 final size:2
Alignment explanation
Indices: 6943712--6943740 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
6943702 ATAATAAATA
6943712 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6943741 CAGTTCCTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:6944652 original size:24 final size:26
Alignment explanation
Indices: 6944624--6944678 Score: 62
Period size: 24 Copynumber: 2.2 Consensus size: 26
6944614 TTTGTAATTT
** *
6944624 ATTTTTA-TTTTTTAAAAT-TTTATA
1 ATTTTTACTTTTACAAAATGTTTAAA
6944648 A-TTTTACTTTTACAAAATGTTTAAA
1 ATTTTTACTTTTACAAAATGTTTAAA
6944673 ATTTTT
1 ATTTTT
6944679 CTAATATATT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
23 5 0.20
24 10 0.40
25 6 0.24
26 4 0.16
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.60
Consensus pattern (26 bp):
ATTTTTACTTTTACAAAATGTTTAAA
Found at i:6944653 original size:29 final size:28
Alignment explanation
Indices: 6944604--6944659 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
6944594 TCTCCACTAA
* *
6944604 TTTTAAAAATTTTGTAATTTATTTTTAT
1 TTTTAAAAATTTTATAATTTACTTTTAT
*
6944632 TTTTTAAAATTTTATAATTTTACTTTTA
1 TTTTAAAAATTTTATAA-TTTACTTTTA
6944660 CAAAATGTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 15 0.62
29 9 0.38
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (28 bp):
TTTTAAAAATTTTATAATTTACTTTTAT
Found at i:6944690 original size:38 final size:37
Alignment explanation
Indices: 6944648--6944765 Score: 100
Period size: 38 Copynumber: 3.1 Consensus size: 37
6944638 AAATTTTATA
6944648 ATTTTACTTTTACAAAATGTTTAAAATTTTTCTAATAT
1 ATTTTACTTTTACAAAAT-TTTAAAATTTTTCTAATAT
* * *
6944686 ATTTTATTTTTTA-AAAATTTT--AATTTNAAATCTTATA-
1 ATTTTA-CTTTTACAAAATTTTAAAATTT---TTCTAATAT
* * *
6944723 ATTTTACCTTTACAAAACTTTTAAAGTTTTTTTAATAT
1 ATTTTACTTTTACAAAA-TTTTAAAATTTTTCTAATAT
6944761 ATTTT
1 ATTTT
6944766 TATTTTTTTG
Statistics
Matches: 62, Mismatches: 9, Indels: 18
0.70 0.10 0.20
Matches are distributed among these distances:
35 5 0.08
36 4 0.06
37 18 0.29
38 26 0.42
39 5 0.08
40 4 0.06
ACGTcount: A:0.36, C:0.07, G:0.02, T:0.55
Consensus pattern (37 bp):
ATTTTACTTTTACAAAATTTTAAAATTTTTCTAATAT
Found at i:6944711 original size:17 final size:19
Alignment explanation
Indices: 6944672--6944711 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 19
6944662 AAATGTTTAA
*
6944672 AATTTTTCTAATATATTTT
1 AATTTTTCTAATAAATTTT
6944691 -ATTTTT-TAA-AAATTTT
1 AATTTTTCTAATAAATTTT
6944707 AATTT
1 AATTT
6944712 NAAATCTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 4
0.79 0.04 0.17
Matches are distributed among these distances:
16 6 0.32
17 7 0.37
18 6 0.32
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (19 bp):
AATTTTTCTAATAAATTTT
Found at i:6944729 original size:75 final size:75
Alignment explanation
Indices: 6944638--6944783 Score: 206
Period size: 75 Copynumber: 1.9 Consensus size: 75
6944628 TTATTTTTTA
* *
6944638 AAATTTTATAATTTTACTTTTACAAAA-TGTTTAAAATTTTTCTAATATA-TTTTATTTTTTAAA
1 AAATCTTATAATTTTACCTTTACAAAACT-TTTAAAATTTTTCTAATATATTTTTATTTTTTAAA
6944701 AATTTTAATTT
65 AATTTTAATTT
* * **
6944712 NAAATCTTATAATTTTACCTTTACAAAACTTTTAAAGTTTTTTTAATATATTTTTATTTTTTTGA
1 -AAATCTTATAATTTTACCTTTACAAAACTTTTAAAATTTTTCTAATATATTTTTATTTTTTAAA
6944777 AATTTTA
65 AATTTTA
6944784 TAATTTATCT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
75 43 0.68
76 20 0.32
ACGTcount: A:0.36, C:0.05, G:0.02, T:0.56
Consensus pattern (75 bp):
AAATCTTATAATTTTACCTTTACAAAACTTTTAAAATTTTTCTAATATATTTTTATTTTTTAAAA
ATTTTAATTT
Found at i:6944794 original size:75 final size:73
Alignment explanation
Indices: 6944643--6944800 Score: 194
Period size: 75 Copynumber: 2.1 Consensus size: 73
6944633 TTTTAAAATT
*
6944643 TTATAATTTTACTTTTACAAAATGTTTAAAATTTTTCTAATATATTTTATTTTTTAAAAATTTTA
1 TTATAATTTTACCTTTACAAAATGTTTAAAATTTTTCTAATATATTTTATTTTTTAAAAATTTTA
6944708 ATTTNAAATC
66 ATTT--AATC
* * * *
6944718 TTATAATTTTACCTTTACAAAACT-TTTAAAGTTTTTTTAATATATTTTTATTTTTTTGAAATTT
1 TTATAATTTTACCTTTACAAAA-TGTTTAAAATTTTTCTAATATA-TTTTA-TTTTTTAAAAATT
6944782 TATAATTT-ATC
63 T-TAATTTAATC
6944793 TTAATAAT
1 TT-ATAAT
6944801 AATTTTTTAT
Statistics
Matches: 73, Mismatches: 5, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
75 44 0.60
76 11 0.15
77 12 0.16
78 6 0.08
ACGTcount: A:0.35, C:0.06, G:0.02, T:0.56
Consensus pattern (73 bp):
TTATAATTTTACCTTTACAAAATGTTTAAAATTTTTCTAATATATTTTATTTTTTAAAAATTTTA
ATTTAATC
Found at i:6945098 original size:15 final size:15
Alignment explanation
Indices: 6945080--6945131 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
6945070 TATTTATTTA
6945080 TTTTATTTTTAATAT
1 TTTTATTTTTAATAT
**
6945095 TTTTAACTTTAA-AT
1 TTTTATTTTTAATAT
*
6945109 TTTT-TATTTAATCAT
1 TTTTATTTTTAAT-AT
6945124 TTTTATTT
1 TTTTATTT
6945132 GTGATTTTGA
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
13 5 0.17
14 6 0.21
15 16 0.55
16 2 0.07
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (15 bp):
TTTTATTTTTAATAT
Found at i:6946598 original size:2 final size:2
Alignment explanation
Indices: 6946589--6946630 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
6946579 TCACACAATT
6946589 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6946630 T
1 T
6946631 GCAAACATAT
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:6949851 original size:42 final size:43
Alignment explanation
Indices: 6949790--6949882 Score: 125
Period size: 42 Copynumber: 2.2 Consensus size: 43
6949780 TTGTGTGTGA
* * * *
6949790 TGATGATGACCTAGCCATGTGCGTGT-AGGAGTGCACATGAGC
1 TGATGATGACCCAACCATGTGCGAGTGAGGAGTGCACATGAAC
* *
6949832 TGATGATGACCCAATCATGTGCGAGTGGGGAGTGCACATGAAC
1 TGATGATGACCCAACCATGTGCGAGTGAGGAGTGCACATGAAC
6949875 TGATGATG
1 TGATGATG
6949883 GTGGGATGGT
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 22 0.50
43 22 0.50
ACGTcount: A:0.26, C:0.17, G:0.33, T:0.24
Consensus pattern (43 bp):
TGATGATGACCCAACCATGTGCGAGTGAGGAGTGCACATGAAC
Found at i:6952242 original size:35 final size:35
Alignment explanation
Indices: 6952201--6952269 Score: 102
Period size: 35 Copynumber: 2.0 Consensus size: 35
6952191 GCCACTAGGT
* **
6952201 GGAGAACAGATCACGCATGTGCTGAAGCAATGGGG
1 GGAGAACAAATCACGCATGTGCCAAAGCAATGGGG
*
6952236 GGAGAACAAATCATGCATGTGCCAAAGCAATGGG
1 GGAGAACAAATCACGCATGTGCCAAAGCAATGGG
6952270 CAGAAAATAG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.35, C:0.17, G:0.33, T:0.14
Consensus pattern (35 bp):
GGAGAACAAATCACGCATGTGCCAAAGCAATGGGG
Found at i:6953270 original size:2 final size:2
Alignment explanation
Indices: 6953263--6953307 Score: 81
Period size: 2 Copynumber: 22.5 Consensus size: 2
6953253 GGCATACCTT
*
6953263 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AT AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
6953305 AC A
1 AC A
6953308 TATAGTTTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.47, G:0.00, T:0.02
Consensus pattern (2 bp):
AC
Found at i:6953590 original size:18 final size:19
Alignment explanation
Indices: 6953556--6953591 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
6953546 ATTTCCTAAC
*
6953556 TTTTTAAAAATATCCCAAG
1 TTTTCAAAAATATCCCAAG
6953575 TTTTCAAAAATA-CCCAA
1 TTTTCAAAAATATCCCAA
6953592 ATTCAATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.44, C:0.19, G:0.03, T:0.33
Consensus pattern (19 bp):
TTTTCAAAAATATCCCAAG
Found at i:6965911 original size:20 final size:21
Alignment explanation
Indices: 6965878--6965916 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
6965868 CAGATTAAAA
6965878 TTTTTTTTCAAATT-TAAATT
1 TTTTTTTTCAAATTATAAATT
6965898 TTTTTTTGTC-AATTATAAA
1 TTTTTTT-TCAAATTATAAA
6965917 GATTAAATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.62
Consensus pattern (21 bp):
TTTTTTTTCAAATTATAAATT
Found at i:6967271 original size:31 final size:31
Alignment explanation
Indices: 6967199--6967279 Score: 103
Period size: 31 Copynumber: 2.6 Consensus size: 31
6967189 TTTTTCAAAT
*
6967199 ATTTTGTTCAATTTAGTCCCTTAACATTTCA
1 ATTTTGTTCAATTTAGTCCCTTAACATATCA
6967230 ATTTTGTTCAATTTAGTCCC-TATACTATAT-A
1 ATTTTGTTCAATTTAGTCCCTTA-AC-ATATCA
* *
6967261 TTTTTATTCAATTTAGTCC
1 ATTTTGTTCAATTTAGTCC
6967280 TTATGTCGTG
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
30 2 0.04
31 40 0.89
32 3 0.07
ACGTcount: A:0.26, C:0.17, G:0.06, T:0.51
Consensus pattern (31 bp):
ATTTTGTTCAATTTAGTCCCTTAACATATCA
Found at i:6967411 original size:32 final size:32
Alignment explanation
Indices: 6967375--6967445 Score: 83
Period size: 32 Copynumber: 2.2 Consensus size: 32
6967365 GCATTGCCAT
6967375 GTCATTATAAT-AGTGCCACGTGGCACTACCAC
1 GTCATTATAATCAGTGCCACGTGG-ACTACCAC
*** *
6967407 GTCA-TAGCGTCAGTGCCACGTGGTCTACCAC
1 GTCATTATAATCAGTGCCACGTGGACTACCAC
6967438 GTCATTAT
1 GTCATTAT
6967446 GTAGATGTCA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
31 14 0.44
32 18 0.56
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (32 bp):
GTCATTATAATCAGTGCCACGTGGACTACCAC
Found at i:6968722 original size:47 final size:47
Alignment explanation
Indices: 6968671--6968972 Score: 372
Period size: 47 Copynumber: 6.4 Consensus size: 47
6968661 GGTATCGCTC
* *
6968671 AGAGTTGGTGAGACGCCATGGAGGGAATCTGTGAGACGCCAGAGTTA
1 AGAGTTGGTGACACGCCATGGAGGGAATCTGTGACACGCCAGAGTTA
* * * * * *
6968718 AGAGTTGGTGACACACCATGGTGGGAATGTGTGACACGACAGCGTTC
1 AGAGTTGGTGACACGCCATGGAGGGAATCTGTGACACGCCAGAGTTA
* * * *
6968765 AGGGTTGGTGAGACACCATGGAGGGAATCTGTGACACGTCAGA-TTA
1 AGAGTTGGTGACACGCCATGGAGGGAATCTGTGACACGCCAGAGTTA
* * ** *
6968811 AGAGTTGGTGACACGGCATGGAGGGAATCTGTGACACGTCAGCTTTC
1 AGAGTTGGTGACACGCCATGGAGGGAATCTGTGACACGCCAGAGTTA
* * * ** * *
6968858 AGGGTTGGTGAGACGCCACGGATTGAATCTGTGAGACGCTAGAGTTA
1 AGAGTTGGTGACACGCCATGGAGGGAATCTGTGACACGCCAGAGTTA
*
6968905 AGAGTTGGTGACACGCCATGGAGGGAATCTGTGAGACGCCAGAGTTA
1 AGAGTTGGTGACACGCCATGGAGGGAATCTGTGACACGCCAGAGTTA
6968952 AGAGTTGGTGACACGCCATGG
1 AGAGTTGGTGACACGCCATGG
6968973 TCATGTTTAG
Statistics
Matches: 215, Mismatches: 39, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
46 40 0.19
47 175 0.81
ACGTcount: A:0.26, C:0.17, G:0.36, T:0.21
Consensus pattern (47 bp):
AGAGTTGGTGACACGCCATGGAGGGAATCTGTGACACGCCAGAGTTA
Found at i:6968924 original size:140 final size:141
Alignment explanation
Indices: 6968671--6968972 Score: 376
Period size: 140 Copynumber: 2.1 Consensus size: 141
6968661 GGTATCGCTC
* *
6968671 AGAGTTGGTGAGACGCCATGGAGGGAATCTGTGAGACGCCAGAGTTAAGAGTTGGTGACACACCA
1 AGAGTTGGTGACACGCCATGGAGGGAATCTGTGACACGCCAGAGTTAAGAGTTGGTGACACACCA
* * * * * *
6968736 TGGTGGGAATGTGTGACACGACAGCGTTCAGGGTTGGTGAGACACCATGGAGGGAATCTGTGACA
66 CGGTGGGAATCTGTGACACGACAGAGTTAAGAGTTGGTGACACACCATGGAGGGAATCTGTGACA
*
6968801 CGTCAGA-TTA
131 CGCCAGAGTTA
* * ** * * * *
6968811 AGAGTTGGTGACACGGCATGGAGGGAATCTGTGACACGTCAGCTTTCAGGGTTGGTGAGACGCCA
1 AGAGTTGGTGACACGCCATGGAGGGAATCTGTGACACGCCAGAGTTAAGAGTTGGTGACACACCA
* * *
6968876 CGGAT-TGAATCTGTGAGACG-CTAGAGTTAAGAGTTGGTGACACGCCATGGAGGGAATCTGTGA
66 CGG-TGGGAATCTGTGACACGAC-AGAGTTAAGAGTTGGTGACACACCATGGAGGGAATCTGTGA
*
6968939 GACGCCAGAGTTA
129 CACGCCAGAGTTA
6968952 AGAGTTGGTGACACGCCATGG
1 AGAGTTGGTGACACGCCATGG
6968973 TCATGTTTAG
Statistics
Matches: 137, Mismatches: 22, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
139 1 0.01
140 112 0.82
141 24 0.18
ACGTcount: A:0.26, C:0.17, G:0.36, T:0.21
Consensus pattern (141 bp):
AGAGTTGGTGACACGCCATGGAGGGAATCTGTGACACGCCAGAGTTAAGAGTTGGTGACACACCA
CGGTGGGAATCTGTGACACGACAGAGTTAAGAGTTGGTGACACACCATGGAGGGAATCTGTGACA
CGCCAGAGTTA
Found at i:6968967 original size:24 final size:24
Alignment explanation
Indices: 6968888--6968969 Score: 64
Period size: 24 Copynumber: 3.5 Consensus size: 24
6968878 GATTGAATCT
* *
6968888 GTGAGACGCTAGAGTTAAGAGTTG
1 GTGACACGCCAGAGTTAAGAGTTG
* *
6968912 GTGACACGCCATG-G--AGGGAATCT-
1 GTGACACGCCA-GAGTTA-AGAGT-TG
*
6968935 GTGAGACGCCAGAGTTAAGAGTTG
1 GTGACACGCCAGAGTTAAGAGTTG
6968959 GTGACACGCCA
1 GTGACACGCCA
6968970 TGGTCATGTT
Statistics
Matches: 43, Mismatches: 8, Indels: 14
0.66 0.12 0.22
Matches are distributed among these distances:
22 2 0.05
23 15 0.35
24 24 0.56
25 2 0.05
ACGTcount: A:0.28, C:0.17, G:0.35, T:0.20
Consensus pattern (24 bp):
GTGACACGCCAGAGTTAAGAGTTG
Found at i:6969026 original size:52 final size:53
Alignment explanation
Indices: 6968960--6969059 Score: 157
Period size: 53 Copynumber: 1.9 Consensus size: 53
6968950 TAAGAGTTGG
* * *
6968960 TGACACGCCATGGTCATG-TTTAGAGTGTGTGACACGGCATTGCTTGAAAAGC
1 TGACACGCCATGGTCATGCTTTAAAGTGCGTGACACGGCAGTGCTTGAAAAGC
*
6969012 TGACACGCCCTGGTCATGCTTTAAAGTGCGTGACACGGCAGTGCTTGA
1 TGACACGCCATGGTCATGCTTTAAAGTGCGTGACACGGCAGTGCTTGA
6969060 GCAATTGACA
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
52 17 0.40
53 26 0.60
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (53 bp):
TGACACGCCATGGTCATGCTTTAAAGTGCGTGACACGGCAGTGCTTGAAAAGC
Found at i:6969584 original size:31 final size:31
Alignment explanation
Indices: 6969546--6970057 Score: 505
Period size: 31 Copynumber: 16.5 Consensus size: 31
6969536 TTAGTTATTA
*
6969546 GCGTGTGACAACATTTTATTTGATATGCATG
1 GCGTGTGACAACATTTTACTTGATATGCATG
*
6969577 GCGTGTGACAGCATTTTACTTGATATGCATG
1 GCGTGTGACAACATTTTACTTGATATGCATG
* * * * *
6969608 TCGTGTCACAGCATTTTACTTGTTATGCATA
1 GCGTGTGACAACATTTTACTTGATATGCATG
* * *
6969639 GCGTTTGACAGCATTTTACTTGTTATGCATG
1 GCGTGTGACAACATTTTACTTGATATGCATG
* *
6969670 GCGTTTGACAGCATTTTACTTGATATGCATG
1 GCGTGTGACAACATTTTACTTGATATGCATG
* * * *
6969701 TCATGTCACAGA-ATTTTACTTGTTATGCATG
1 GCGTGTGACA-ACATTTTACTTGATATGCATG
* * ** *
6969732 GCGTTTGACATCATTTTACTTCTTATGCATC
1 GCGTGTGACAACATTTTACTTGATATGCATG
* * *
6969763 GCGTTTGATAGCATTTTACTTGATATGCATG
1 GCGTGTGACAACATTTTACTTGATATGCATG
* ** *
6969794 TCGTGACACAGA-ATTTTACTTGTTATGCATG
1 GCGTGTGACA-ACATTTTACTTGATATGCATG
* * * *
6969825 GCATTTGACAGCATTTGACTT-ATTATGCATG
1 GCGTGTGACAACATTTTACTTGA-TATGCATG
* *
6969856 GCGTTTGACAGCATTTTACTTGATATGCATG
1 GCGTGTGACAACATTTTACTTGATATGCATG
* * *
6969887 TCGTGTCACAGA-ATTTTACTTGTTATGCATG
1 GCGTGTGACA-ACATTTTACTTGATATGCATG
* *
6969918 GCGTTTGACAACATTTAACTTGATATGCATG
1 GCGTGTGACAACATTTTACTTGATATGCATG
* *
6969949 GCGTTTGACAACATTTAACTTGATATGCATG
1 GCGTGTGACAACATTTTACTTGATATGCATG
* *
6969980 GCGTGTCACAACATTTTACTTGTTATGCATG
1 GCGTGTGACAACATTTTACTTGATATGCATG
* *
6970011 GCGTGTCACAACA-TTTAGATTGCA-ATGCATG
1 GCGTGTGACAACATTTTA-CTTG-ATATGCATG
* *
6970042 GCATGTCACAACATTT
1 GCGTGTGACAACATTT
6970058 ATTCCTTATT
Statistics
Matches: 407, Mismatches: 63, Indels: 21
0.83 0.13 0.04
Matches are distributed among these distances:
30 5 0.01
31 399 0.98
32 3 0.01
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (31 bp):
GCGTGTGACAACATTTTACTTGATATGCATG
Found at i:6969708 original size:93 final size:93
Alignment explanation
Indices: 6969546--6970026 Score: 730
Period size: 93 Copynumber: 5.2 Consensus size: 93
6969536 TTAGTTATTA
* * * *
6969546 GCGTGTGACAACATTTTATTTGATATGCATGGCGTGTGACAGCATTTTACTTGATATGCATGTCG
1 GCGTTTGACAACATTTTACTTGTTATGCATGGCGTTTGACAGCATTTTACTTGATATGCATGTCG
* *
6969611 TGTCACAGCATTTTACTTGTTATGCATA
66 TGTCACAGAATTTTACTTGTTATGCATG
* *
6969639 GCGTTTGACAGCATTTTACTTGTTATGCATGGCGTTTGACAGCATTTTACTTGATATGCATGTCA
1 GCGTTTGACAACATTTTACTTGTTATGCATGGCGTTTGACAGCATTTTACTTGATATGCATGTCG
6969704 TGTCACAGAATTTTACTTGTTATGCATG
66 TGTCACAGAATTTTACTTGTTATGCATG
* * * *
6969732 GCGTTTGACATCATTTTACTTCTTATGCATCGCGTTTGATAGCATTTTACTTGATATGCATGTCG
1 GCGTTTGACAACATTTTACTTGTTATGCATGGCGTTTGACAGCATTTTACTTGATATGCATGTCG
*
6969797 TGACACAGAATTTTACTTGTTATGCATG
66 TGTCACAGAATTTTACTTGTTATGCATG
* * * *
6969825 GCATTTGACAGCATTTGACTTATTATGCATGGCGTTTGACAGCATTTTACTTGATATGCATGTCG
1 GCGTTTGACAACATTTTACTTGTTATGCATGGCGTTTGACAGCATTTTACTTGATATGCATGTCG
6969890 TGTCACAGAATTTTACTTGTTATGCATG
66 TGTCACAGAATTTTACTTGTTATGCATG
* * * * *
6969918 GCGTTTGACAACATTTAACTTGATATGCATGGCGTTTGACAACATTTAACTTGATATGCATGGCG
1 GCGTTTGACAACATTTTACTTGTTATGCATGGCGTTTGACAGCATTTTACTTGATATGCATGTCG
6969983 TGTCACA-ACATTTTACTTGTTATGCATG
66 TGTCACAGA-ATTTTACTTGTTATGCATG
* *
6970011 GCGTGTCACAACATTT
1 GCGTTTGACAACATTT
6970027 AGATTGCAAT
Statistics
Matches: 356, Mismatches: 31, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
92 1 0.00
93 355 1.00
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (93 bp):
GCGTTTGACAACATTTTACTTGTTATGCATGGCGTTTGACAGCATTTTACTTGATATGCATGTCG
TGTCACAGAATTTTACTTGTTATGCATG
Found at i:6971985 original size:156 final size:156
Alignment explanation
Indices: 6971696--6972177 Score: 655
Period size: 156 Copynumber: 3.1 Consensus size: 156
6971686 TAGAGTAATT
** * * * *
6971696 TATGTAATTATAGTTTACGAAAGCGAGGACAAGTCTTCAAGCACCGATCGGTCTAGC-CCAACCG
1 TATGTAATTGCAGTTTGCGAAAGCGACGACAGGTCTTGAAGCACCGATCGGTCTAGCTCC-ACCG
* * * * *
6971760 CAGACAGCTAACGAGCCGACGATAAGAATATTAAAGTTGTAACGGTTAATGTTCAACAATTCCAA
65 CAGACTGCTAACGAGCCGGCGGTAAGGATATTAAAGTTGTAACGGTTAATGTTCAACAATTCCAT
*
6971825 ACATGATTATTGAATAACACAGTTATA
130 ACATGATTATTGAATAACACAATTATA
* * ** *
6971852 TATGTAATTGCAGTTTGCGGAAGCGATGACAGGTCTTGAAGCACCGATCGGTCCGGCTCCACCGT
1 TATGTAATTGCAGTTTGCGAAAGCGACGACAGGTCTTGAAGCACCGATCGGTCTAGCTCCACCGC
* *
6971917 AGACTGCTAACGAGCCGGCGGTAAGGATATTAAAGTTGTAACAGTTAATGTTCAACAATTTCATA
66 AGACTGCTAACGAGCCGGCGGTAAGGATATTAAAGTTGTAACGGTTAATGTTCAACAATTCCATA
*
6971982 CATGATTATTGAATAACACAATTAAA
131 CATGATTATTGAATAACACAATTATA
* * * * *
6972008 TATGTAATTGCAG-ATGCGAAAGCGACAACAGGTCCTGAAGCACCAATCAGTCTAGCTCCACCGC
1 TATGTAATTGCAGTTTGCGAAAGCGACGACAGGTCTTGAAGCACCGATCGGTCTAGCTCCACCGC
*
6972072 AGACTGCTAACGAGCC-GCTGGTTAGGATATTAAAGTTGTAACGGTTAATGTTCAACAATTCCAT
66 AGACTGCTAACGAGCCGGC-GGTAAGGATATTAAAGTTGTAACGGTTAATGTTCAACAATTCCAT
* *
6972136 ATATGATTATTGAATAACATAATTATA
130 ACATGATTATTGAATAACACAATTATA
* *
6972163 TATGTTATTGTAGTT
1 TATGTAATTGCAGTT
6972178 GACCCAGTCG
Statistics
Matches: 285, Mismatches: 38, Indels: 6
0.87 0.12 0.02
Matches are distributed among these distances:
154 2 0.01
155 134 0.47
156 147 0.52
157 2 0.01
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.27
Consensus pattern (156 bp):
TATGTAATTGCAGTTTGCGAAAGCGACGACAGGTCTTGAAGCACCGATCGGTCTAGCTCCACCGC
AGACTGCTAACGAGCCGGCGGTAAGGATATTAAAGTTGTAACGGTTAATGTTCAACAATTCCATA
CATGATTATTGAATAACACAATTATA
Found at i:6972119 original size:155 final size:155
Alignment explanation
Indices: 6971734--6972172 Score: 630
Period size: 155 Copynumber: 2.8 Consensus size: 155
6971724 ACAAGTCTTC
* * *
6971734 AAGCACCGATCGGTCTAGC-CCAACCGCAGACAGCTAACGAGCCGACGATAAGAATATTAAAGTT
1 AAGCACCGATCGGTCTAGCTCC-ACCGCAGACTGCTAACGAGCCG-CGGTAAGGATATTAAAGTT
* *
6971798 GTAACGGTTAATGTTCAACAATTCCAAACATGATTATTGAATAACACAGTTATATATGTAATTGC
64 GTAACGGTTAATGTTCAACAATTCCATACATGATTATTGAATAACACAATTATATATGTAATTGC
* * ** *
6971863 AGTTTGCGGAAGCGATGACAGGTCTTG
129 AGTATGCGAAAGCGACAACAGGTCCTG
** *
6971890 AAGCACCGATCGGTCCGGCTCCACCGTAGACTGCTAACGAGCCGGCGGTAAGGATATTAAAGTTG
1 AAGCACCGATCGGTCTAGCTCCACCGCAGACTGCTAACGAGCC-GCGGTAAGGATATTAAAGTTG
* * *
6971955 TAACAGTTAATGTTCAACAATTTCATACATGATTATTGAATAACACAATTAAATATGTAATTGCA
65 TAACGGTTAATGTTCAACAATTCCATACATGATTATTGAATAACACAATTATATATGTAATTGCA
6972020 G-ATGCGAAAGCGACAACAGGTCCTG
130 GTATGCGAAAGCGACAACAGGTCCTG
* * *
6972045 AAGCACCAATCAGTCTAGCTCCACCGCAGACTGCTAACGAGCCGCTGGTTAGGATATTAAAGTTG
1 AAGCACCGATCGGTCTAGCTCCACCGCAGACTGCTAACGAGCCGC-GGTAAGGATATTAAAGTTG
* * *
6972110 TAACGGTTAATGTTCAACAATTCCATATATGATTATTGAATAACATAATTATATATGTTATTG
65 TAACGGTTAATGTTCAACAATTCCATACATGATTATTGAATAACACAATTATATATGTAATTG
6972173 TAGTTGACCC
Statistics
Matches: 252, Mismatches: 28, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
154 2 0.01
155 132 0.52
156 115 0.46
157 3 0.01
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (155 bp):
AAGCACCGATCGGTCTAGCTCCACCGCAGACTGCTAACGAGCCGCGGTAAGGATATTAAAGTTGT
AACGGTTAATGTTCAACAATTCCATACATGATTATTGAATAACACAATTATATATGTAATTGCAG
TATGCGAAAGCGACAACAGGTCCTG
Found at i:6972571 original size:31 final size:30
Alignment explanation
Indices: 6972533--6972889 Score: 128
Period size: 31 Copynumber: 11.5 Consensus size: 30
6972523 GTCAGCTTTA
6972533 GCGTGTCACAACATTATATATGTTATTCATG
1 GCGTGTCACAACATTATAT-TGTTATTCATG
* * * *
6972564 GCGTGTCACAACGTTTGATTTTGATATGCATG
1 GCGTGTCACAAC-ATT-ATATTGTTATTCATG
* * * *
6972596 GCGTGTCAGAACATTTTGCTTGTT-TTCCTTG
1 GCGTGTCACAACATTAT-ATTGTTATT-CATG
** * *
6972627 GCGTGTCACCAAGTTTATCTTGTTATGCATG
1 GCGTGTCA-CAACATTATATTGTTATTCATG
* *
6972658 GCGTGTCATAACATTTTAATTGTT-TTCCATG
1 GCGTGTCACAACATTAT-ATTGTTATT-CATG
* * * * * * *
6972689 GTGTCTCACAACATTTTCCTTGTTATCCTTA
1 GCGTGTCACAACATTAT-ATTGTTATTCATG
* ** * *
6972720 GCATGTCACCAAGTTTATCTTGTTATGCATG
1 GCGTGTCA-CAACATTATATTGTTATTCATG
* * * ** * *
6972751 GTGTGTCACAACATTTTCCTCATTATCCTTG
1 GCGTGTCACAACATTAT-ATTGTTATTCATG
** * * *
6972782 GCGTGTCACCAAGTTTATCTTATTATGCATG
1 GCGTGTCA-CAACATTATATTGTTATTCATG
** *
6972813 GCGTGTCATGACATTTTACTTGTT-TTGCATG
1 GCGTGTCACAACATTATA-TTGTTATT-CATG
* * * *
6972844 GCGTGTGACAACATTTTACTTGGTATGCACT-
1 GCGTGTCACAACATTATA-TTGTTATTCA-TG
*
6972875 GCATGTCACAACATT
1 GCGTGTCACAACATT
6972890 TTACTGTTTA
Statistics
Matches: 239, Mismatches: 71, Indels: 32
0.70 0.21 0.09
Matches are distributed among these distances:
30 19 0.08
31 174 0.73
32 43 0.18
33 3 0.01
ACGTcount: A:0.21, C:0.20, G:0.19, T:0.40
Consensus pattern (30 bp):
GCGTGTCACAACATTATATTGTTATTCATG
Found at i:6972632 original size:63 final size:62
Alignment explanation
Indices: 6972533--6972700 Score: 189
Period size: 62 Copynumber: 2.7 Consensus size: 62
6972523 GTCAGCTTTA
* * *
6972533 GCGTGTCACAACATTAT-ATATGTTATT-CATGGCGTGTCACAACGTTTGATTTTGATATGCATG
1 GCGTGTCAGAACATTTTAAT-TGTT-TTCCATGGCGTGTCACAACGTTT-ATCTTGATATGCATG
** * *
6972596 GCGTGTCAGAACATTTTGCTTGTTTTCCTTGGCGTGTCACCAA-GTTTATCTTGTTATGCATG
1 GCGTGTCAGAACATTTTAATTGTTTTCCATGGCGTGTCA-CAACGTTTATCTTGATATGCATG
* * *
6972658 GCGTGTCATAACATTTTAATTGTTTTCCATGGTGTCTCACAAC
1 GCGTGTCAGAACATTTTAATTGTTTTCCATGGCGTGTCACAAC
6972701 ATTTTCCTTG
Statistics
Matches: 89, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
61 3 0.03
62 48 0.54
63 34 0.38
64 4 0.04
ACGTcount: A:0.21, C:0.18, G:0.20, T:0.40
Consensus pattern (62 bp):
GCGTGTCAGAACATTTTAATTGTTTTCCATGGCGTGTCACAACGTTTATCTTGATATGCATG
Found at i:6972711 original size:62 final size:62
Alignment explanation
Indices: 6972588--6972714 Score: 159
Period size: 62 Copynumber: 2.0 Consensus size: 62
6972578 TTGATTTTGA
** * * *
6972588 TATGCATGGCGTGTCAGAACATTTTGCTTGTTTTCCTTGGCGTGTCACCAAGTTTATCTTGT
1 TATGCATGGCGTGTCAGAACATTTTAATTGTTTTCCATGGCGTCTCACCAAATTTATCTTGT
* *
6972650 TATGCATGGCGTGTCATAACATTTTAATTGTTTTCCATGGTGTCTCA-CAACATTT-TCCTTGT
1 TATGCATGGCGTGTCAGAACATTTTAATTGTTTTCCATGGCGTCTCACCAA-ATTTAT-CTTGT
6972712 TAT
1 TAT
6972715 CCTTAGCATG
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
61 4 0.07
62 52 0.93
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.43
Consensus pattern (62 bp):
TATGCATGGCGTGTCAGAACATTTTAATTGTTTTCCATGGCGTCTCACCAAATTTATCTTGT
Found at i:6972819 original size:62 final size:62
Alignment explanation
Indices: 6972685--6972829 Score: 209
Period size: 62 Copynumber: 2.3 Consensus size: 62
6972675 AATTGTTTTC
* ** *
6972685 CATGGTGTCTCACAACATTTTCCTTGTTATCCTTAGCATGTCACCAAGTTTATCTTGTTATG
1 CATGGTGTGTCACAACATTTTCCTCATTATCCTTAGCATGTCACCAAGTTTATCTTATTATG
* *
6972747 CATGGTGTGTCACAACATTTTCCTCATTATCCTTGGCGTGTCACCAAGTTTATCTTATTATG
1 CATGGTGTGTCACAACATTTTCCTCATTATCCTTAGCATGTCACCAAGTTTATCTTATTATG
* **
6972809 CATGGCGTGTCATGACATTTT
1 CATGGTGTGTCACAACATTTT
6972830 ACTTGTTTTG
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.17, T:0.41
Consensus pattern (62 bp):
CATGGTGTGTCACAACATTTTCCTCATTATCCTTAGCATGTCACCAAGTTTATCTTATTATG
Found at i:6972820 original size:93 final size:93
Alignment explanation
Indices: 6972592--6972861 Score: 249
Period size: 93 Copynumber: 2.9 Consensus size: 93
6972582 TTTTGATATG
* * * * * *
6972592 CATGGCGTGTCAGAACATTTTGCTTGTTTTCCTTGGCGTGTCACCAAGTTTATCTTGTTATGCAT
1 CATGGCGTCTCACAACATTTTCCTTATTATCCATGGCGTGTCACCAAGTTTATCTTGTTATGCAT
* ** *
6972657 GGCGTGTCATAACATTTTAATTGTTTTC
66 GGCGTGTCACAACATTTTAATCATTATC
* * * * *
6972685 CATGGTGTCTCACAACATTTTCCTTGTTATCCTTAGCATGTCACCAAGTTTATCTTGTTATGCAT
1 CATGGCGTCTCACAACATTTTCCTTATTATCCATGGCGTGTCACCAAGTTTATCTTGTTATGCAT
* **
6972750 GGTGTGTCACAACATTTTCCTCATTATC
66 GGCGTGTCACAACATTTTAATCATTATC
* * * * ** * *
6972778 CTTGGCGTGTCACCAA-GTTTAT-CTTATTATGCATGGCGTGTCATGACATTTTA-CTTGTTTTG
1 CATGGCGTCTCA-CAACATTT-TCCTTATTATCCATGGCGTGTCACCA-AGTTTATCTTGTTATG
*
6972840 CATGGCGTGTGACAACATTTTA
63 CATGGCGTGTCACAACATTTTA
6972862 CTTGGTATGC
Statistics
Matches: 144, Mismatches: 30, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
93 135 0.94
94 9 0.06
ACGTcount: A:0.20, C:0.20, G:0.19, T:0.41
Consensus pattern (93 bp):
CATGGCGTCTCACAACATTTTCCTTATTATCCATGGCGTGTCACCAAGTTTATCTTGTTATGCAT
GGCGTGTCACAACATTTTAATCATTATC
Found at i:6972846 original size:62 final size:62
Alignment explanation
Indices: 6972685--6972894 Score: 172
Period size: 62 Copynumber: 3.4 Consensus size: 62
6972675 AATTGTTTTC
* * * ** * * * *
6972685 CATGGTGTCTCACAACATTTTCCTTGTTATCCTTAGCATGTCACCAAGTTTATCTTGTTATG
1 CATGGCGTGTCACAACATTTTACTCATTATCCATGGCGTGTCACCAAGTTTATCTTATTATG
* * *
6972747 CATGGTGTGTCACAACATTTTCCTCATTATCCTTGGCGTGTCACCAAGTTTATCTTATTATG
1 CATGGCGTGTCACAACATTTTACTCATTATCCATGGCGTGTCACCAAGTTTATCTTATTATG
** ** * * * * * **
6972809 CATGGCGTGTCATGACATTTTACTTGTTTTGCATGGCGTGTGACAACATTTTA-CTTGGTATG
1 CATGGCGTGTCACAACATTTTACTCATTATCCATGGCGTGTCACCA-AGTTTATCTTATTATG
*
6972871 CACT-GCATGTCACAACATTTTACT
1 CA-TGGCGTGTCACAACATTTTACT
6972895 GTTTATGGGT
Statistics
Matches: 123, Mismatches: 23, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
62 117 0.95
63 6 0.05
ACGTcount: A:0.21, C:0.21, G:0.17, T:0.40
Consensus pattern (62 bp):
CATGGCGTGTCACAACATTTTACTCATTATCCATGGCGTGTCACCAAGTTTATCTTATTATG
Found at i:6974424 original size:16 final size:15
Alignment explanation
Indices: 6974370--6974427 Score: 52
Period size: 14 Copynumber: 3.9 Consensus size: 15
6974360 GTACACATAA
6974370 ATTTTTT-TATACA-
1 ATTTTTTGTATACAC
*
6974383 ATTCATTT-TATACAC
1 ATT-TTTTGTATACAC
6974398 ATTTTTTGTATACAC
1 ATTTTTTGTATACAC
6974413 -TTTTGATTGTATACA
1 ATTTT--TTGTATACA
6974428 ATTCATTGTA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
13 3 0.08
14 16 0.42
15 10 0.26
16 9 0.24
ACGTcount: A:0.29, C:0.12, G:0.05, T:0.53
Consensus pattern (15 bp):
ATTTTTTGTATACAC
Found at i:6974435 original size:14 final size:15
Alignment explanation
Indices: 6974377--6974437 Score: 54
Period size: 14 Copynumber: 4.1 Consensus size: 15
6974367 TAAATTTTTT
*
6974377 TATACA-ATTCATTT
1 TATACACATTCATTG
**
6974391 TATACACATTTTTTG
1 TATACACATTCATTG
* *
6974406 TATACACTTTTGATTG
1 TATACAC-ATTCATTG
6974422 TATACA-ATTCATTG
1 TATACACATTCATTG
6974436 TA
1 TA
6974438 AACAGATATA
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
14 14 0.38
15 12 0.32
16 11 0.30
ACGTcount: A:0.31, C:0.13, G:0.07, T:0.49
Consensus pattern (15 bp):
TATACACATTCATTG
Found at i:6975141 original size:31 final size:31
Alignment explanation
Indices: 6975101--6975398 Score: 235
Period size: 31 Copynumber: 9.7 Consensus size: 31
6975091 ACACACCAGA
*
6975101 ACTTGTTATGCATGGCGGGTCAAAACAATTT
1 ACTTGTTATGCATGGCGTGTCAAAACAATTT
* *
6975132 AATTGTTATGCATGGCGTGTCAAAACATTTT
1 ACTTGTTATGCATGGCGTGTCAAAACAATTT
* * * * **
6975163 GCTTGTTATCCTTGGCGTGTCACAACCTTTT
1 ACTTGTTATGCATGGCGTGTCAAAACAATTT
*
6975194 ACTTGTTATGCATGGCGTGTCAGAAC-ATTT
1 ACTTGTTATGCATGGCGTGTCAAAACAATTT
* * * **
6975224 GCTTGTTATCCTTGGCGTGTC-ACCCAATTT
1 ACTTGTTATGCATGGCGTGTCAAAACAATTT
* *
6975254 ATCTTGTTATGCATGGCGTGTCACAACATTTT
1 A-CTTGTTATGCATGGCGTGTCAAAACAATTT
*** *
6975286 ACTTGTTATGCATGG-GTGTCATTTCATTTT
1 ACTTGTTATGCATGGCGTGTCAAAACAATTT
* *** * * * *
6975316 TCTTGTTACAAATGGCGTGTTACAATATTTT
1 ACTTGTTATGCATGGCGTGTCAAAACAATTT
** * * * *
6975347 GTTTGATATGCACGGCATGTCACAAC-ATTT
1 ACTTGTTATGCATGGCGTGTCAAAACAATTT
6975377 AACTTGTTATGCATGGCGTGTC
1 -ACTTGTTATGCATGGCGTGTC
6975399 TCACATTTAT
Statistics
Matches: 207, Mismatches: 55, Indels: 10
0.76 0.20 0.04
Matches are distributed among these distances:
29 1 0.00
30 51 0.25
31 149 0.72
32 6 0.03
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.40
Consensus pattern (31 bp):
ACTTGTTATGCATGGCGTGTCAAAACAATTT
Found at i:6975260 original size:61 final size:62
Alignment explanation
Indices: 6975102--6975398 Score: 262
Period size: 61 Copynumber: 4.8 Consensus size: 62
6975092 CACACCAGAA
* * * * * *
6975102 CTTGTTATGCATGGCGGGTCAAAACAATTTAATTGTTATGCATGGCGTGTCAAAACATTTTG
1 CTTGTTATCCTTGGCGTGTCACACCAATTTACTTGTTATGCATGGCGTGTCAAAACATTTTG
* *
6975164 CTTGTTATCCTTGGCGTGTCACAACC-TTTTACTTGTTATGCATGGCGTGTCAGAACA-TTTG
1 CTTGTTATCCTTGGCGTGTCAC-ACCAATTTACTTGTTATGCATGGCGTGTCAAAACATTTTG
* *
6975225 CTTGTTATCCTTGGCGTGTCAC-CCAATTTATCTTGTTATGCATGGCGTGTCACAACATTTTA
1 CTTGTTATCCTTGGCGTGTCACACCAATTTA-CTTGTTATGCATGGCGTGTCAAAACATTTTG
* * *** * * *** * * *
6975287 CTTGTTATGCATGG-GTGTCATTTCATTTTTCTTGTTACAAATGGCGTGTTACAATATTTTG
1 CTTGTTATCCTTGGCGTGTCACACCAATTTACTTGTTATGCATGGCGTGTCAAAACATTTTG
* * * ** * *
6975348 TTTGATATGCACGGCATGTCACAAC-ATTTAACTTGTTATGCATGGCGTGTC
1 CTTGTTATCCTTGGCGTGTCACACCAATTT-ACTTGTTATGCATGGCGTGTC
6975399 TCACATTTAT
Statistics
Matches: 192, Mismatches: 36, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
59 2 0.01
60 4 0.02
61 96 0.50
62 88 0.46
63 2 0.01
ACGTcount: A:0.22, C:0.18, G:0.21, T:0.40
Consensus pattern (62 bp):
CTTGTTATCCTTGGCGTGTCACACCAATTTACTTGTTATGCATGGCGTGTCAAAACATTTTG
Found at i:6975260 original size:92 final size:93
Alignment explanation
Indices: 6975101--6975398 Score: 291
Period size: 92 Copynumber: 3.2 Consensus size: 93
6975091 ACACACCAGA
* *
6975101 ACTTGTTATGCATGGCGGGTCAAAACAATTTAATTGTTATGCATGGCGTGTCAAAACATTTTGCT
1 ACTTGTTATGCATGGCGTGTCAAAACAATTTAATTGTTATCCATGGCGTGTCAAAACATTTTGCT
* *
6975166 TGTTATCCTTGGCGTGTCACAACCTTTT
66 TGTTATCCATGGCGTGTCACAACATTTT
* ** * **
6975194 ACTTGTTATGCATGGCGTGTCAGAAC-ATTTGCTTGTTATCCTTGGCGTGTC-ACCCAATTTAT-
1 ACTTGTTATGCATGGCGTGTCAAAACAATTTAATTGTTATCCATGGCGTGTCAAAAC-ATTT-TG
*
6975256 CTTGTTATGCATGGCGTGTCACAACATTTT
64 CTTGTTATCCATGGCGTGTCACAACATTTT
*** * ** * * * * *
6975286 ACTTGTTATGCATGG-GTGTCATTTCATTTTTCTTGTTA-CAAATGGCGTGTTACAATATTTTGT
1 ACTTGTTATGCATGGCGTGTCAAAACAATTTAATTGTTATC-CATGGCGTGTCAAAACATTTTGC
* * * * *
6975349 TTGATATGCACGGCATGTCACAACATTTA
65 TTGTTATCCATGGCGTGTCACAACATTTT
6975378 ACTTGTTATGCATGGCGTGTC
1 ACTTGTTATGCATGGCGTGTC
6975399 TCACATTTAT
Statistics
Matches: 170, Mismatches: 28, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
91 11 0.06
92 129 0.76
93 30 0.18
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.40
Consensus pattern (93 bp):
ACTTGTTATGCATGGCGTGTCAAAACAATTTAATTGTTATCCATGGCGTGTCAAAACATTTTGCT
TGTTATCCATGGCGTGTCACAACATTTT
Found at i:6978944 original size:31 final size:31
Alignment explanation
Indices: 6978881--6978962 Score: 92
Period size: 31 Copynumber: 2.6 Consensus size: 31
6978871 TTATCAGTCG
* * * *
6978881 TGTTGTTACACGCCATGCAAATGATGTAAAA
1 TGTTGTAACACGCCATGCATATCAAGTAAAA
*
6978912 TGTTGTAACACGCCATGCATATCAAGTCAAA
1 TGTTGTAACACGCCATGCATATCAAGTAAAA
* * *
6978943 TGTCGTGACACTCCATGCAT
1 TGTTGTAACACGCCATGCAT
6978963 CAGTATCGTT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (31 bp):
TGTTGTAACACGCCATGCATATCAAGTAAAA
Found at i:6978999 original size:23 final size:23
Alignment explanation
Indices: 6978943--6979024 Score: 101
Period size: 23 Copynumber: 3.6 Consensus size: 23
6978933 TCAAGTCAAA
* *
6978943 TGTCGTGACACTCCATGCATCAG
1 TGTCGTGACACGCCATGCATCAC
* * *
6978966 TATCGTTACACGCCATGCTTCAC
1 TGTCGTGACACGCCATGCATCAC
* *
6978989 TGTTGTGACACGTCATGCATCAC
1 TGTCGTGACACGCCATGCATCAC
6979012 TGTCGTGACACGC
1 TGTCGTGACACGC
6979025 TAATCACTGT
Statistics
Matches: 47, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.21, C:0.30, G:0.21, T:0.28
Consensus pattern (23 bp):
TGTCGTGACACGCCATGCATCAC
Found at i:6979147 original size:55 final size:55
Alignment explanation
Indices: 6979063--6979240 Score: 169
Period size: 55 Copynumber: 3.2 Consensus size: 55
6979053 CCAACATCCG
* * * *
6979063 TGACACGCTAAAAACCCAAAAAACCAGTTAACCCACGACACACTAGGAGCAGCCA
1 TGACACGCCAAAAACCCAAAAAACCAGTTAACCCACCACACACCAGGAACAGCCA
** * * *
6979118 TGACACGCCAAAAA-CCAATAAATTCAGTTAGCCCACCACACCCCAGGAACAGCCG
1 TGACACGCCAAAAACCCAA-AAAACCAGTTAACCCACCACACACCAGGAACAGCCA
* * * * * * * * *
6979173 TGACACGCTAACAACCCAAATAACTAGTTAACCCACAACACGCCAGTAACAGTCG
1 TGACACGCCAAAAACCCAAAAAACCAGTTAACCCACCACACACCAGGAACAGCCA
*
6979228 TGACACGCTAAAA
1 TGACACGCCAAAA
6979241 TAACTCTTCA
Statistics
Matches: 100, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
54 4 0.04
55 92 0.92
56 4 0.04
ACGTcount: A:0.41, C:0.33, G:0.14, T:0.12
Consensus pattern (55 bp):
TGACACGCCAAAAACCCAAAAAACCAGTTAACCCACCACACACCAGGAACAGCCA
Found at i:6982194 original size:34 final size:34
Alignment explanation
Indices: 6982143--6982207 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
6982133 CTCAATCTTT
* * *
6982143 AGAATATTATTCTTGAAATTCGAACAAGAATTTG
1 AGAATATCATTCCTGAAATTCAAACAAGAATTTG
6982177 AGAATATCATTCCTGAAATTCAAACAAGAAT
1 AGAATATCATTCCTGAAATTCAAACAAGAAT
6982208 GATTACTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.31
Consensus pattern (34 bp):
AGAATATCATTCCTGAAATTCAAACAAGAATTTG
Found at i:6992799 original size:36 final size:36
Alignment explanation
Indices: 6992756--6992965 Score: 201
Period size: 35 Copynumber: 5.9 Consensus size: 36
6992746 TCTCAAGCAC
* *
6992756 TTGATTAAAATTGTTTAATTAAGTCATTGGGCCTAA
1 TTGATTAAAATTATTTAATTAAGTTATTGGGCCTAA
* ** * *
6992792 TTAATT-AAATTAAATAATTATGTTATTGGGCTTAA
1 TTGATTAAAATTATTTAATTAAGTTATTGGGCCTAA
* * *
6992827 TTGATTAAATTTTTTTAATTAAGTCATTGGGCCTAA
1 TTGATTAAAATTATTTAATTAAGTTATTGGGCCTAA
* * * *
6992863 TTGATTAAAATTATTGAATTAAATTGTTGGGCTTAA
1 TTGATTAAAATTATTTAATTAAGTTATTGGGCCTAA
* * * *
6992899 TTAATT-AAATTGTTTAATTGAGTTATTGGACCTAA
1 TTGATTAAAATTATTTAATTAAGTTATTGGGCCTAA
***
6992934 TTGATT-AAATTAAACAATTAAGTTAATTGGGC
1 TTGATTAAAATTATTTAATTAAGTT-ATTGGGC
6992966 TTCTTAAAGA
Statistics
Matches: 135, Mismatches: 37, Indels: 4
0.77 0.21 0.02
Matches are distributed among these distances:
35 68 0.50
36 67 0.50
ACGTcount: A:0.36, C:0.06, G:0.15, T:0.44
Consensus pattern (36 bp):
TTGATTAAAATTATTTAATTAAGTTATTGGGCCTAA
Found at i:6992831 original size:71 final size:71
Alignment explanation
Indices: 6992756--6992967 Score: 275
Period size: 71 Copynumber: 3.0 Consensus size: 71
6992746 TCTCAAGCAC
* *
6992756 TTGATTAAAATTGTTTAATTAAGTCATTGGGCCTAATTAATTAAATTAAATAATTATGTTATTGG
1 TTGATTAAAATTGTTTAATTAAGTCATTGGGCCTAATTGATTAAATTAAATAATTAAGTTATTGG
6992821 GCTTAA
66 GCTTAA
* * * * *
6992827 TTGATTAAATTTTTTTAATTAAGTCATTGGGCCTAATTGATTAAAATT-ATTGAATTAAATTGTT
1 TTGATTAAAATTGTTTAATTAAGTCATTGGGCCTAATTGATT-AAATTAAAT-AATTAAGTTATT
6992891 GGGCTTAA
64 GGGCTTAA
* * * * *
6992899 TTAATT-AAATTGTTTAATTGAGTTATTGGACCTAATTGATTAAATTAAACAATTAAGTTAATTG
1 TTGATTAAAATTGTTTAATTAAGTCATTGGGCCTAATTGATTAAATTAAATAATTAAGTT-ATTG
6992963 GGCTT
65 GGCTT
6992968 CTTAAAGACT
Statistics
Matches: 120, Mismatches: 17, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
70 13 0.11
71 80 0.67
72 27 0.22
ACGTcount: A:0.35, C:0.06, G:0.15, T:0.44
Consensus pattern (71 bp):
TTGATTAAAATTGTTTAATTAAGTCATTGGGCCTAATTGATTAAATTAAATAATTAAGTTATTGG
GCTTAA
Found at i:6992963 original size:107 final size:107
Alignment explanation
Indices: 6992756--6992965 Score: 244
Period size: 107 Copynumber: 2.0 Consensus size: 107
6992746 TCTCAAGCAC
* * *
6992756 TTGATTAAAATTGTTTAATTAAGTCATTGGGCCTAATTAATTAAATTAAATAATTATGTTATTGG
1 TTGATTAAAATTATTGAATTAAATCATTGGGCCTAATTAATTAAATTAAATAATTATGTTATTGG
* * **** *
6992821 GCTTAATTGATTAAATTTTTTTAATTAAGTCATTGGGCCTAA
66 ACCTAATTGATTAAATTTAAACAATTAAGTAATTGGGCCTAA
** * ***
6992863 TTGATTAAAATTATTGAATTAAATTGTTGGGCTTAATTAATTAAATTGTTTAATTGA-GTTATTG
1 TTGATTAAAATTATTGAATTAAATCATTGGGCCTAATTAATTAAATTAAATAATT-ATGTTATTG
6992927 GACCTAATTGATTAAA-TTAAACAATTAAGTTAATTGGGC
65 GACCTAATTGATTAAATTTAAACAATTAAG-TAATTGGGC
6992966 TTCTTAAAGA
Statistics
Matches: 85, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
106 9 0.11
107 75 0.88
108 1 0.01
ACGTcount: A:0.36, C:0.06, G:0.15, T:0.44
Consensus pattern (107 bp):
TTGATTAAAATTATTGAATTAAATCATTGGGCCTAATTAATTAAATTAAATAATTATGTTATTGG
ACCTAATTGATTAAATTTAAACAATTAAGTAATTGGGCCTAA
Found at i:6994102 original size:35 final size:33
Alignment explanation
Indices: 6994063--6994172 Score: 109
Period size: 35 Copynumber: 3.2 Consensus size: 33
6994053 GGTTGATCCC
6994063 TTGAAAAACCATTGTTGTAGGTTGTGGTTGAGTCT
1 TTGAAAAACCATTGTTG-AGGTTGTGGTTGAG-CT
** *
6994098 TTGAAAAATTATT-TTGA-GTTTTGGTTGAGCT
1 TTGAAAAACCATTGTTGAGGTTGTGGTTGAGCT
*
6994129 CATGAAAAACCATTG-TGAAAGGTTGTGGTTGAGCAT
1 -TTGAAAAACCATTGTTG--AGGTTGTGGTTGAGC-T
6994165 TTGAAAAA
1 TTGAAAAA
6994173 TCACTTTGGG
Statistics
Matches: 61, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
31 2 0.03
32 23 0.38
33 1 0.02
34 4 0.07
35 30 0.49
36 1 0.02
ACGTcount: A:0.30, C:0.07, G:0.25, T:0.37
Consensus pattern (33 bp):
TTGAAAAACCATTGTTGAGGTTGTGGTTGAGCT
Found at i:6994122 original size:67 final size:67
Alignment explanation
Indices: 6994029--6994219 Score: 201
Period size: 67 Copynumber: 2.8 Consensus size: 67
6994019 TAACTTAGCC
* * *
6994029 TTGAAAAGTTAGTTATTGGGTTTTGGTTGATCCCTTGAAAAACCATTGTTG-TAGGTTGTGGTTG
1 TTGAAAAATTA-TT-TTGGGTTTTGGTTGATCCCATGAAAAACCATTG-TGAAAGGTTGTGGTTG
6994093 AGTC-T
63 AG-CAT
* * *
6994098 TTGAAAAATTATTTTGAGTTTTGGTTGAGCTCATGAAAAACCATTGTGAAAGGTTGTGGTTGAGC
1 TTGAAAAATTATTTTGGGTTTTGGTTGATCCCATGAAAAACCATTGTGAAAGGTTGTGGTTGAGC
6994163 AT
66 AT
* * * * *
6994165 TTGAAAAATCACTTTGGGTTTTAGTTGAT--CTTGGTAAAAACTATTGTGAAAGGTT
1 TTGAAAAATTATTTTGGGTTTTGGTTGATCCCAT-G-AAAAACCATTGTGAAAGGTT
6994220 TTGGCTAAGC
Statistics
Matches: 105, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
65 2 0.02
66 4 0.04
67 87 0.83
68 2 0.02
69 10 0.10
ACGTcount: A:0.27, C:0.08, G:0.25, T:0.40
Consensus pattern (67 bp):
TTGAAAAATTATTTTGGGTTTTGGTTGATCCCATGAAAAACCATTGTGAAAGGTTGTGGTTGAGC
AT
Done.