Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26303135
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.30
Warning! 1968672 characters in sequence are not A, C, G, or T
File 23 of 66
Found at i:7669412 original size:19 final size:19
Alignment explanation
Indices: 7669353--7669414 Score: 54
Period size: 19 Copynumber: 3.1 Consensus size: 19
7669343 GCATGTGAAG
*
7669353 AGAAAAAAGAGAAGGAA-AA
1 AGAAAAAAAAGAA-GAAGAA
*
7669372 AGACAAAAGATAAGAGAAAAGAA
1 AGA-AAAA-A-AAGA-AGAAGAA
7669395 AGAAAAAAAAGAAGAAGAA
1 AGAAAAAAAAGAAGAAGAA
7669414 A
1 A
7669415 AGAGGGGCCC
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
19 10 0.29
20 8 0.23
21 2 0.06
22 9 0.26
23 6 0.17
ACGTcount: A:0.74, C:0.02, G:0.23, T:0.02
Consensus pattern (19 bp):
AGAAAAAAAAGAAGAAGAA
Found at i:7669418 original size:31 final size:33
Alignment explanation
Indices: 7669350--7669418 Score: 81
Period size: 33 Copynumber: 2.2 Consensus size: 33
7669340 TCGGCATGTG
* *
7669350 AAGAGAAAAAAGAGAAGGAAAAAGACAAAAGAT
1 AAGAGAAAAAAGAGAAGAAAAAAGACAAAAGAA
*
7669383 AAGAGAAAAGAA-AGAA-AAAAAAGA-AGAAGAA
1 AAGAGAAAA-AAGAGAAGAAAAAAGACAAAAGAA
7669414 AAGAG
1 AAGAG
7669419 GGGCCCGACC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
31 10 0.31
32 7 0.22
33 13 0.41
34 2 0.06
ACGTcount: A:0.72, C:0.01, G:0.25, T:0.01
Consensus pattern (33 bp):
AAGAGAAAAAAGAGAAGAAAAAAGACAAAAGAA
Found at i:7669519 original size:10 final size:10
Alignment explanation
Indices: 7669504--7669577 Score: 60
Period size: 10 Copynumber: 7.0 Consensus size: 10
7669494 AAAAAGGGAA
7669504 AGAAAAAGAG
1 AGAAAAAGAG
7669514 AGAAAAGAGAAG
1 AGAAAA-AG-AG
*
7669526 AAAGAAAAAGAA
1 --AGAAAAAGAG
7669538 AGAAAAA-AG
1 AGAAAAAGAG
*
7669547 AGAAAAAGAA
1 AGAAAAAGAG
*
7669557 AGAAAAAAAAG
1 AG-AAAAAGAG
*
7669568 AGAGAAAGAG
1 AGAAAAAGAG
7669578 CAAAGCATCG
Statistics
Matches: 51, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
9 8 0.16
10 22 0.43
11 10 0.20
12 3 0.06
13 2 0.04
14 6 0.12
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (10 bp):
AGAAAAAGAG
Found at i:7669530 original size:24 final size:23
Alignment explanation
Indices: 7669501--7669576 Score: 100
Period size: 23 Copynumber: 3.3 Consensus size: 23
7669491 GACAAAAAGG
*
7669501 GAAAGAAAAAGAGAGAAAAGAGAA
1 GAAAGAAAAAGAAAGAAAAGAG-A
*
7669525 GAAAGAAAAAGAAAGAAAAAAGA
1 GAAAGAAAAAGAAAGAAAAGAGA
*
7669548 GAAA-AAGAAAGAAAAAAAAGAGA
1 GAAAGAA-AAAGAAAGAAAAGAGA
7669571 GAAAGA
1 GAAAGA
7669577 GCAAAGCATC
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
22 2 0.04
23 23 0.50
24 21 0.46
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (23 bp):
GAAAGAAAAAGAAAGAAAAGAGA
Found at i:7669564 original size:19 final size:18
Alignment explanation
Indices: 7669501--7669563 Score: 78
Period size: 19 Copynumber: 3.6 Consensus size: 18
7669491 GACAAAAAGG
7669501 GAAAGAAAAAGAGAGAAAA
1 GAAAGAAAAAGAGA-AAAA
*
7669520 G--AGAAGAA-AGAAAAA
1 GAAAGAAAAAGAGAAAAA
7669535 GAAAGAAAAAAGAGAAAAA
1 GAAAG-AAAAAGAGAAAAA
7669554 GAAAGAAAAA
1 GAAAGAAAAA
7669564 AAAGAGAGAA
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
15 5 0.13
16 3 0.08
17 8 0.21
18 9 0.24
19 13 0.34
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (18 bp):
GAAAGAAAAAGAGAAAAA
Found at i:7669744 original size:11 final size:11
Alignment explanation
Indices: 7669720--7669760 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
7669710 AGCAACAAGG
*
7669720 GGAAAAAAATA
1 GGAAAGAAATA
7669731 GGAAAGAGAA-A
1 GGAAAGA-AATA
7669742 GG-AAGAAATA
1 GGAAAGAAATA
7669752 GGAAAGAAA
1 GGAAAGAAA
7669761 GAAGGAATAG
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
9 2 0.08
10 7 0.27
11 15 0.58
12 2 0.08
ACGTcount: A:0.66, C:0.00, G:0.29, T:0.05
Consensus pattern (11 bp):
GGAAAGAAATA
Found at i:7669750 original size:21 final size:22
Alignment explanation
Indices: 7669726--7669767 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
7669716 AAGGGGAAAA
*
7669726 AAATAGGAAAGAGA-AAGGAAG
1 AAATAGGAAAGAAAGAAGGAAG
7669747 AAATAGGAAAGAAAGAAGGAA
1 AAATAGGAAAGAAAGAAGGAA
7669768 TAGCTAGATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.64, C:0.00, G:0.31, T:0.05
Consensus pattern (22 bp):
AAATAGGAAAGAAAGAAGGAAG
Found at i:7670455 original size:60 final size:61
Alignment explanation
Indices: 7670353--7670499 Score: 201
Period size: 60 Copynumber: 2.4 Consensus size: 61
7670343 ATTTAATTTA
* * * *
7670353 AAAAGGGAGACCTAAAGCCCCGATTTATGTTGGGTGGTGTGGGTAGTTCCCACGAGTAGGT
1 AAAAGGGAGACCTGAAGCCCCGATTTATATTGGGTAGCGTGGGTAGTTCCCACGAGTAGGT
*
7670414 -AAAGGGAGACTTGAAGCCCCGATTTATATAT-GGTAGCGTGGGTAGTTCCCACGAGTAGGT
1 AAAAGGGAGACCTGAAGCCCCGATTTATAT-TGGGTAGCGTGGGTAGTTCCCACGAGTAGGT
7670474 AAAAAGGG-GAACCTGAAGCCCCGATT
1 -AAAAGGGAG-ACCTGAAGCCCCGATT
7670500 CATCTGGTGG
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
60 53 0.70
61 2 0.03
62 21 0.28
ACGTcount: A:0.28, C:0.18, G:0.32, T:0.22
Consensus pattern (61 bp):
AAAAGGGAGACCTGAAGCCCCGATTTATATTGGGTAGCGTGGGTAGTTCCCACGAGTAGGT
Found at i:7672161 original size:129 final size:128
Alignment explanation
Indices: 7672028--7672262 Score: 461
Period size: 129 Copynumber: 1.8 Consensus size: 128
7672018 GAGTTTTCTC
7672028 TTTTTTTTTTAAAAAAAAAACTCGTTAGCTTCGTAGGGGAATTAAATGTTTTTTTCAAAAATCCT
1 TTTTTTTTTTAAAAAAAAAACTCGTTAGCTTCGTAGGGGAATTAAATGTTTTTTTCAAAAATCCT
7672093 TTCTCAAAAAATACCTCCTCCTTCTCTCCCTATCGATTGCTNGCCCATTTCTTTTTCTTTATCT
66 TTCTCAAAAAATACCTCCTCCTTCTCTCCCTATCGATTGCT-GCCCATTTCTTTTTCTTTATCT
7672157 TTTTTTTTTTAAAAAAAAAACTCGTTAGCTTCGTAGGGGAATTAAATGTTTTTTTCAAAAATCCT
1 TTTTTTTTTTAAAAAAAAAACTCGTTAGCTTCGTAGGGGAATTAAATGTTTTTTTCAAAAATCCT
7672222 TTCTCAAAAAATACCTCCTCCTTCTCTCCCTATCGATTGCT
66 TTCTCAAAAAATACCTCCTCCTTCTCTCCCTATCGATTGCT
7672263 CTTTTCTCTC
Statistics
Matches: 106, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
129 106 1.00
ACGTcount: A:0.27, C:0.21, G:0.09, T:0.42
Consensus pattern (128 bp):
TTTTTTTTTTAAAAAAAAAACTCGTTAGCTTCGTAGGGGAATTAAATGTTTTTTTCAAAAATCCT
TTCTCAAAAAATACCTCCTCCTTCTCTCCCTATCGATTGCTGCCCATTTCTTTTTCTTTATCT
Found at i:7673716 original size:17 final size:16
Alignment explanation
Indices: 7673692--7673730 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
7673682 AATATCAATG
*
7673692 ATATTTATATATAAAT
1 ATATTTATATATAAAA
*
7673708 ATATATTATTTATAAAA
1 ATAT-TTATATATAAAA
7673725 ATATTT
1 ATATTT
7673731 TTAACAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
ATATTTATATATAAAA
Found at i:7686931 original size:42 final size:42
Alignment explanation
Indices: 7686872--7686956 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
7686862 TATACAGTTC
7686872 TATTCAATAAAGCTTATATTTAAAAGTAAACAAATGGATGAT
1 TATTCAATAAAGCTTATATTTAAAAGTAAACAAATGGATGAT
7686914 TATTCAATAAAGCTTATATTTAAAAGTAAACAAATGGATGAT
1 TATTCAATAAAGCTTATATTTAAAAGTAAACAAATGGATGAT
7686956 T
1 T
7686957 TTGTCTTACG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.47, C:0.07, G:0.12, T:0.34
Consensus pattern (42 bp):
TATTCAATAAAGCTTATATTTAAAAGTAAACAAATGGATGAT
Found at i:7688493 original size:43 final size:43
Alignment explanation
Indices: 7688411--7688514 Score: 120
Period size: 43 Copynumber: 2.4 Consensus size: 43
7688401 AGTATCCCAG
* * *
7688411 ATCAAGGATATCAACCATTAGGCTTAGAAGCGTAGCACTAAAA
1 ATCAAGGATATCAAGCATAAGGATTAGAAGCGTAGCACTAAAA
* * * * *
7688454 ATCAAGGATATCAAGCATAATGATTTGAA-CTGTATCACTATAG
1 ATCAAGGATATCAAGCATAAGGATTAGAAGC-GTAGCACTAAAA
7688497 ATCAAGGATATCAAGCAT
1 ATCAAGGATATCAAGCAT
7688515 CGTGCTTGGT
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
42 1 0.02
43 51 0.98
ACGTcount: A:0.41, C:0.16, G:0.17, T:0.25
Consensus pattern (43 bp):
ATCAAGGATATCAAGCATAAGGATTAGAAGCGTAGCACTAAAA
Found at i:7688821 original size:45 final size:45
Alignment explanation
Indices: 7688748--7688843 Score: 147
Period size: 45 Copynumber: 2.1 Consensus size: 45
7688738 TCACAGCACT
* *
7688748 ACAAATTAAAGATAATTAAGTAGCGGATATTAAGTAGATATCACG
1 ACAAATCAAAGATAATTAAGTAGCGGATATTAAGTAGATATCACA
* * *
7688793 ACAAATCAAGGATAATTATGTAGTGGATATTAAGTAGATATCACA
1 ACAAATCAAAGATAATTAAGTAGCGGATATTAAGTAGATATCACA
7688838 ACAAAT
1 ACAAAT
7688844 TAAGAATATA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.47, C:0.09, G:0.17, T:0.27
Consensus pattern (45 bp):
ACAAATCAAAGATAATTAAGTAGCGGATATTAAGTAGATATCACA
Found at i:7689011 original size:43 final size:43
Alignment explanation
Indices: 7688959--7689168 Score: 161
Period size: 43 Copynumber: 4.9 Consensus size: 43
7688949 GATATAATTT
* *
7688959 ATTATGCTTGGAACCGTAATACCCTAGATCAAGGATATCAAGC
1 ATTATGCTTGGAACCGTAACACCATAGATCAAGGATATCAAGC
* * * * *
7689002 ATTAGGCTTGGAAGCGTAGCACTATAGATCAAGGATATCAAAC
1 ATTATGCTTGGAACCGTAACACCATAGATCAAGGATATCAAGC
* * * ** * * *
7689045 ATAATGATTTGAATTGTATCACTATAAATCAAGGATATCAAGC
1 ATTATGCTTGGAACCGTAACACCATAGATCAAGGATATCAAGC
* * * * * *
7689088 ATTATGTTTGGTACCATAACACCCTATATCAAGGATATC-ATC
1 ATTATGCTTGGAACCGTAACACCATAGATCAAGGATATCAAGC
* * ** * *
7689130 TATTATACTTGAAATTGTAGCACTATAGATCAAGGATAT
1 -ATTATGCTTGGAACCGTAACACCATAGATCAAGGATAT
7689169 TTAGTGGATA
Statistics
Matches: 127, Mismatches: 39, Indels: 2
0.76 0.23 0.01
Matches are distributed among these distances:
42 2 0.02
43 125 0.98
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.30
Consensus pattern (43 bp):
ATTATGCTTGGAACCGTAACACCATAGATCAAGGATATCAAGC
Found at i:7689119 original size:86 final size:86
Alignment explanation
Indices: 7688986--7689168 Score: 208
Period size: 86 Copynumber: 2.1 Consensus size: 86
7688976 AATACCCTAG
* * * *
7688986 ATCAAGGATATCAAGCATTAGGCTTGGAAGCGTAGCACTATAGATCAAGGATATCAAAC-ATAAT
1 ATCAAGGATATCAAGCATTAGGCTTGGAACCATAACACCATAGATCAAGGATATC-AACTATAAT
* *
7689050 GATTTG-AATTGTATCACTATAA
65 -ACTTGAAATTGTAGCACTATAA
* * * * * * *
7689072 ATCAAGGATATCAAGCATTATGTTTGGTACCATAACACCCTATATCAAGGATATCATCTATTATA
1 ATCAAGGATATCAAGCATTAGGCTTGGAACCATAACACCATAGATCAAGGATATCAACTATAATA
*
7689137 CTTGAAATTGTAGCACTATAG
66 CTTGAAATTGTAGCACTATAA
7689158 ATCAAGGATAT
1 ATCAAGGATAT
7689169 TTAGTGGATA
Statistics
Matches: 81, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
85 6 0.07
86 75 0.93
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.30
Consensus pattern (86 bp):
ATCAAGGATATCAAGCATTAGGCTTGGAACCATAACACCATAGATCAAGGATATCAACTATAATA
CTTGAAATTGTAGCACTATAA
Found at i:7692247 original size:43 final size:43
Alignment explanation
Indices: 7692199--7692292 Score: 116
Period size: 43 Copynumber: 2.2 Consensus size: 43
7692189 CATGACATAG
* * *
7692199 CAAGGATATCATCTATTATGCTTGGTACCATAAGACCCCAAAT
1 CAAGGATATCAGCTATTATGCTTGGAACCATAACACCCCAAAT
* * * **
7692242 CAAGGATATTAGGTATTATGCTTGGAATCATAACATTCCAAAT
1 CAAGGATATCAGCTATTATGCTTGGAACCATAACACCCCAAAT
7692285 CAAGGATA
1 CAAGGATA
7692293 CTTAAGCAGT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (43 bp):
CAAGGATATCAGCTATTATGCTTGGAACCATAACACCCCAAAT
Found at i:7696768 original size:14 final size:14
Alignment explanation
Indices: 7696733--7696768 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
7696723 CTTGTTGGTT
7696733 TTAATTTTAGTTAA
1 TTAATTTTAGTTAA
* *
7696747 TCAGTTTTAGTTAA
1 TTAATTTTAGTTAA
7696761 TTAATTTT
1 TTAATTTT
7696769 GATTATTTGC
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.31, C:0.03, G:0.08, T:0.58
Consensus pattern (14 bp):
TTAATTTTAGTTAA
Found at i:7696995 original size:15 final size:15
Alignment explanation
Indices: 7696977--7697006 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7696967 AAAATGACCA
*
7696977 AAATGTTAAGGTTTT
1 AAATGTTAAGATTTT
7696992 AAATGTTAAGATTTT
1 AAATGTTAAGATTTT
7697007 GTGGATATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.17, T:0.47
Consensus pattern (15 bp):
AAATGTTAAGATTTT
Found at i:7708599 original size:12 final size:12
Alignment explanation
Indices: 7708582--7708606 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7708572 CAATTAGAAC
7708582 ATAATTTTTTGG
1 ATAATTTTTTGG
7708594 ATAATTTTTTGG
1 ATAATTTTTTGG
7708606 A
1 A
7708607 ATTGTATATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.00, G:0.16, T:0.56
Consensus pattern (12 bp):
ATAATTTTTTGG
Found at i:7710217 original size:21 final size:21
Alignment explanation
Indices: 7710192--7710246 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
7710182 GGCACCAAGT
*
7710192 TTCTCATTGCAGCAAAGTTCA
1 TTCTCACTGCAGCAAAGTTCA
* *
7710213 TTCTCGCTGCAGCGAAGTTCA
1 TTCTCACTGCAGCAAAGTTCA
*
7710234 TTCTCGCTGCAGC
1 TTCTCACTGCAGC
7710247 GAGATTTAGG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.20, C:0.29, G:0.20, T:0.31
Consensus pattern (21 bp):
TTCTCACTGCAGCAAAGTTCA
Found at i:7710247 original size:21 final size:21
Alignment explanation
Indices: 7710199--7710248 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
7710189 AGTTTCTCAT
*
7710199 TGCAGCAAAGTTCATTCTCGC
1 TGCAGCGAAGTTCATTCTCGC
7710220 TGCAGCGAAGTTCATTCTCGC
1 TGCAGCGAAGTTCATTCTCGC
7710241 TGCAGCGA
1 TGCAGCGA
7710249 GATTTAGGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.26
Consensus pattern (21 bp):
TGCAGCGAAGTTCATTCTCGC
Found at i:7718176 original size:2 final size:2
Alignment explanation
Indices: 7718169--7718222 Score: 99
Period size: 2 Copynumber: 26.5 Consensus size: 2
7718159 AATGCACAAC
7718169 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7718211 AT AT AT AGT AT A
1 AT AT AT A-T AT A
7718223 NNNNNNNNNN
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 49 0.96
3 2 0.04
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7735281 original size:23 final size:22
Alignment explanation
Indices: 7735238--7735281 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 22
7735228 GAATACAAAC
* **
7735238 ATATTTTTATTATAATTTAATA
1 ATATTTTTATTAGAAGCTAATA
7735260 ATATTTTGTATTAGAAGCTAAT
1 ATATTTT-TATTAGAAGCTAAT
7735282 TAGACCTTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.39, C:0.02, G:0.07, T:0.52
Consensus pattern (22 bp):
ATATTTTTATTAGAAGCTAATA
Found at i:7735410 original size:10 final size:10
Alignment explanation
Indices: 7735395--7735469 Score: 57
Period size: 10 Copynumber: 7.4 Consensus size: 10
7735385 ATATTCAAAT
7735395 AATAATATTA
1 AATAATATTA
*
7735405 AATAATATGCTT
1 AATAATAT--TA
*
7735417 TATAATATT-
1 AATAATATTA
* *
7735426 TATTATAGTTA
1 AATAATA-TTA
7735437 AATAATATT-
1 AATAATATTA
7735446 AAT-ATATTA
1 AATAATATTA
7735455 AATAATATTTA
1 AATAATA-TTA
7735466 AATA
1 AATA
7735470 TTTTCATTTC
Statistics
Matches: 53, Mismatches: 5, Indels: 13
0.75 0.07 0.18
Matches are distributed among these distances:
8 5 0.09
9 12 0.23
10 16 0.30
11 12 0.23
12 8 0.15
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (10 bp):
AATAATATTA
Found at i:7735410 original size:45 final size:45
Alignment explanation
Indices: 7735350--7735443 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 45
7735340 ATTAAATTTA
* *
7735350 AATAATACTAAATAATATTCTTTATTACATTTATTATA-TTCAAAT
1 AATAATACTAAATAATATGCTTTATAACATTTATTATAGTT-AAAT
* *
7735395 AATAATATTAAATAATATGCTTTATAATATTTATTATAGTTAAAT
1 AATAATACTAAATAATATGCTTTATAACATTTATTATAGTTAAAT
7735440 AATA
1 AATA
7735444 TTAATATATT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
45 42 0.95
46 2 0.05
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.46
Consensus pattern (45 bp):
AATAATACTAAATAATATGCTTTATAACATTTATTATAGTTAAAT
Found at i:7735457 original size:18 final size:19
Alignment explanation
Indices: 7735418--7735463 Score: 67
Period size: 18 Copynumber: 2.4 Consensus size: 19
7735408 AATATGCTTT
*
7735418 ATAATATTTATTATAGTTAA
1 ATAATA-TTAATATAGTTAA
7735438 ATAATATTAATATA-TTAA
1 ATAATATTAATATAGTTAA
7735456 ATAATATT
1 ATAATATT
7735464 TAAATATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 12 0.48
19 7 0.28
20 6 0.24
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (19 bp):
ATAATATTAATATAGTTAA
Found at i:7735470 original size:18 final size:18
Alignment explanation
Indices: 7735418--7735471 Score: 65
Period size: 18 Copynumber: 2.9 Consensus size: 18
7735408 AATATGCTTT
*
7735418 ATAATATTTATTATAGTTAA
1 ATAATATTTA-AATA-TTAA
7735438 ATAATA-TTAATATATTAA
1 ATAATATTTAA-ATATTAA
7735456 ATAATATTTAAATATT
1 ATAATATTTAAATATT
7735472 TTCATTTCCT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
18 15 0.48
19 10 0.32
20 6 0.19
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (18 bp):
ATAATATTTAAATATTAA
Found at i:7742428 original size:20 final size:20
Alignment explanation
Indices: 7742411--7742448 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
7742401 CCTCAAATCT
*
7742411 TACTCGAATAAGTCAAATTA
1 TACTCCAATAAGTCAAATTA
7742431 TACTCCAATAAGTCAAAT
1 TACTCCAATAAGTCAAAT
7742449 GGGGCCAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.18, G:0.08, T:0.29
Consensus pattern (20 bp):
TACTCCAATAAGTCAAATTA
Found at i:7743874 original size:30 final size:30
Alignment explanation
Indices: 7743840--7743951 Score: 77
Period size: 30 Copynumber: 3.6 Consensus size: 30
7743830 TGTGGTGTTC
* *
7743840 AAGGTTCTATCTTA-CCTTTTAAAAGACAGA
1 AAGGTTATATCTTAGCC-TTCAAAAGACAGA
*
7743870 AAGGTTATATTTTAGCCTTCAAAAGACAGTGTTA
1 AAGGTTATATCTTAGCCTTCAAAAGACA--G--A
* * *
7743904 AAGATTCTATCTTAGCCTT-AAAAGATA-A
1 AAGGTTATATCTTAGCCTTCAAAAGACAGA
* *
7743932 AGATGTTATACCTTAGCCTT
1 A-AGGTTATATCTTAGCCTT
7743952 TGAAAGGTAT
Statistics
Matches: 65, Mismatches: 11, Indels: 13
0.73 0.12 0.15
Matches are distributed among these distances:
28 2 0.03
29 14 0.22
30 22 0.34
31 2 0.03
32 1 0.02
33 7 0.11
34 17 0.26
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35
Consensus pattern (30 bp):
AAGGTTATATCTTAGCCTTCAAAAGACAGA
Found at i:7746639 original size:13 final size:13
Alignment explanation
Indices: 7746621--7746645 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7746611 AGAGAAATTG
7746621 TGATTTTATAAAA
1 TGATTTTATAAAA
7746634 TGATTTTATAAA
1 TGATTTTATAAA
7746646 TTTTCTGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:7751339 original size:135 final size:135
Alignment explanation
Indices: 7751093--7751370 Score: 504
Period size: 135 Copynumber: 2.1 Consensus size: 135
7751083 TGTTTATTGT
* *
7751093 TAAT-CTCAGCTGCTCCTATTATCGTTTGTAATGTACGGTTTTGGCACTTTTGATAAGCTTATTA
1 TAATACTCAGCTGCTCCTATTATCATTTGTAATGTACAGTTTTGGCACTTTTGATAAGCTTATTA
7751157 GTATTGGAATGCCAGCCATTCTCTGTTGATCATTCCCTGTCCTTCAAAGACATAGAATCTACATA
66 GTATTGGAATGCCAGCCATTCTCTGTTGATCATTCCCTGTCCTTCAAAGACATAGAATCTACATA
7751222 AGATC
131 AGATC
* * *
7751227 TAATACTCAGCTGCTCCTATTATCATTTGTAGTGTGCAGTTTTGGCGCTTTTGATAAGCTTATTA
1 TAATACTCAGCTGCTCCTATTATCATTTGTAATGTACAGTTTTGGCACTTTTGATAAGCTTATTA
7751292 GTATTGGAATGCCAGCCATTCTCTGTTGATCATTCCCTGTCCTTCAAAGACATAGAATCTACATA
66 GTATTGGAATGCCAGCCATTCTCTGTTGATCATTCCCTGTCCTTCAAAGACATAGAATCTACATA
7751357 AGATC
131 AGATC
7751362 TAATACTCA
1 TAATACTCA
7751371 TCAGTCATTA
Statistics
Matches: 138, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
134 4 0.03
135 134 0.97
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (135 bp):
TAATACTCAGCTGCTCCTATTATCATTTGTAATGTACAGTTTTGGCACTTTTGATAAGCTTATTA
GTATTGGAATGCCAGCCATTCTCTGTTGATCATTCCCTGTCCTTCAAAGACATAGAATCTACATA
AGATC
Found at i:7764409 original size:21 final size:21
Alignment explanation
Indices: 7764383--7764430 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
7764373 TAAAAGTATT
7764383 GATACTTCTATTCTAAGCATC
1 GATACTTCTATTCTAAGCATC
*
7764404 GATACTTCTATTCTACGCATC
1 GATACTTCTATTCTAAGCATC
7764425 GATACT
1 GATACT
7764431 CTTCATTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.27, C:0.25, G:0.10, T:0.38
Consensus pattern (21 bp):
GATACTTCTATTCTAAGCATC
Found at i:7765990 original size:2 final size:2
Alignment explanation
Indices: 7765974--7766010 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
7765964 TAGAGAATTA
*
7765974 AT AT GT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7766011 TTGTGTGTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7766021 original size:16 final size:16
Alignment explanation
Indices: 7765986--7766034 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 16
7765976 ATGTATAATA
* * *
7765986 TATATATATATATATA
1 TATATATATATGTGTG
*
7766002 TATATATATTTGTGTG
1 TATATATATATGTGTG
*
7766018 TATATGTATATGTGTG
1 TATATATATATGTGTG
7766034 T
1 T
7766035 TTGCCTAGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (16 bp):
TATATATATATGTGTG
Found at i:7766021 original size:18 final size:18
Alignment explanation
Indices: 7766000--7766034 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7765990 TATATATATA
*
7766000 TATATATATATTTGTGTG
1 TATATATATATGTGTGTG
*
7766018 TATATGTATATGTGTGT
1 TATATATATATGTGTGT
7766035 TTGCCTAGAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.00, G:0.20, T:0.54
Consensus pattern (18 bp):
TATATATATATGTGTGTG
Found at i:7772296 original size:18 final size:19
Alignment explanation
Indices: 7772261--7772297 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
7772251 TATTGGATTT
7772261 GGATATATTTGAAAAGCTG
1 GGATATATTTGAAAAGCTG
*
7772280 GGATATTTTTG-AAAGCTG
1 GGATATATTTGAAAAGCTG
7772298 TGAAATTGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.32, C:0.05, G:0.27, T:0.35
Consensus pattern (19 bp):
GGATATATTTGAAAAGCTG
Found at i:7775824 original size:19 final size:20
Alignment explanation
Indices: 7775797--7775842 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
7775787 AAGAGACAAG
*
7775797 ATAAAATTTTTA-GAATAAA
1 ATAATATTTTTATGAATAAA
*
7775816 ATAATA-TTTTATTAATAAA
1 ATAATATTTTTATGAATAAA
7775835 ATAATATT
1 ATAATATT
7775843 AAAATATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 5 0.22
19 17 0.74
20 1 0.04
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.43
Consensus pattern (20 bp):
ATAATATTTTTATGAATAAA
Found at i:7776276 original size:19 final size:19
Alignment explanation
Indices: 7776252--7776289 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
7776242 CCATTTGACT
7776252 TATTGGAGTATGATTTGAG
1 TATTGGAGTATGATTTGAG
7776271 TATTGGAGTATGATTTGAG
1 TATTGGAGTATGATTTGAG
7776290 GATTAAGAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.00, G:0.32, T:0.42
Consensus pattern (19 bp):
TATTGGAGTATGATTTGAG
Found at i:7778982 original size:11 final size:11
Alignment explanation
Indices: 7778947--7778985 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
7778937 AACTTTTGGG
*
7778947 TTTAAAGTTGG
1 TTTAAAGTTGT
7778958 TTTAAAGTTGT
1 TTTAAAGTTGT
*
7778969 TTTAAAGTTAT
1 TTTAAAGTTGT
7778980 TTTAAA
1 TTTAAA
7778986 ATTTATAGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.51
Consensus pattern (11 bp):
TTTAAAGTTGT
Found at i:7779031 original size:5 final size:5
Alignment explanation
Indices: 7779017--7779049 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
7779007 CCAAGTCCAA
*
7779017 TTAAG TTAAG ATAAG TTAAG TTAAG TTAAG TTA
1 TTAAG TTAAG TTAAG TTAAG TTAAG TTAAG TTA
7779050 GAATATATTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.42, C:0.00, G:0.18, T:0.39
Consensus pattern (5 bp):
TTAAG
Found at i:7781693 original size:28 final size:28
Alignment explanation
Indices: 7781636--7781694 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
7781626 TTTGAAGTAT
* *
7781636 AGGGGTAAAATGGTAATTTTGCCACTCC
1 AGGGGCAAAATGGTAATTTTGCCACACC
*
7781664 AGGGGCAAAATTGTAATTTT-CCACCACC
1 AGGGGCAAAATGGTAATTTTGCCA-CACC
7781692 AGG
1 AGG
7781695 ACATTTGTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 3 0.11
28 24 0.89
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (28 bp):
AGGGGCAAAATGGTAATTTTGCCACACC
Found at i:7784206 original size:22 final size:22
Alignment explanation
Indices: 7784181--7784224 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
7784171 TTCGATTGGT
*
7784181 ATCAGAGCTTTTAATTTTAAAG
1 ATCAAAGCTTTTAATTTTAAAG
* *
7784203 ATCAAAGTTTTTAGTTTTAAAG
1 ATCAAAGCTTTTAATTTTAAAG
7784225 TGATTTTAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.36, C:0.07, G:0.14, T:0.43
Consensus pattern (22 bp):
ATCAAAGCTTTTAATTTTAAAG
Found at i:7794004 original size:2 final size:2
Alignment explanation
Indices: 7793992--7794026 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
7793982 AACACTTTAC
*
7793992 AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7794027 GTCTAGACAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7800148 original size:50 final size:49
Alignment explanation
Indices: 7800068--7800166 Score: 153
Period size: 50 Copynumber: 2.0 Consensus size: 49
7800058 GGTCTCATCT
*
7800068 TTGCATGCATAGTATTTATTAAATCACATAAAATAAATCTATCACATGC
1 TTGCATGCATAGCATTTATTAAATCACATAAAATAAATCTATCACATGC
* **
7800117 TTGCATTGCATAGCATTTTTTAAATTGCATAAAATAAATCTATCACATGC
1 TTGCA-TGCATAGCATTTATTAAATCACATAAAATAAATCTATCACATGC
7800167 AAACTACTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
49 5 0.11
50 40 0.89
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.36
Consensus pattern (49 bp):
TTGCATGCATAGCATTTATTAAATCACATAAAATAAATCTATCACATGC
Found at i:7800420 original size:8 final size:8
Alignment explanation
Indices: 7800407--7800436 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
7800397 GAGGGGAGTA
*
7800407 AGATAAGG
1 AGATAAAG
7800415 AGATAAAG
1 AGATAAAG
7800423 AGATAAAG
1 AGATAAAG
7800431 AGATAA
1 AGATAA
7800437 GGCAGGACAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.60, C:0.00, G:0.27, T:0.13
Consensus pattern (8 bp):
AGATAAAG
Found at i:7801891 original size:11 final size:11
Alignment explanation
Indices: 7801877--7801906 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
7801867 AATAATATCT
7801877 TATTAATAAAA
1 TATTAATAAAA
*
7801888 TATTATTAAAA
1 TATTAATAAAA
7801899 TATTAATA
1 TATTAATA
7801907 GTTTATTCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (11 bp):
TATTAATAAAA
Found at i:7802334 original size:19 final size:19
Alignment explanation
Indices: 7802310--7802351 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
7802300 CTTCTTCTTC
7802310 TTCATGCTCCCACACTATT
1 TTCATGCTCCCACACTATT
**
7802329 TTCATGCTCCCATGCTATT
1 TTCATGCTCCCACACTATT
7802348 TTCA
1 TTCA
7802352 CTTTACCACC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.19, C:0.33, G:0.07, T:0.40
Consensus pattern (19 bp):
TTCATGCTCCCACACTATT
Found at i:7803675 original size:35 final size:35
Alignment explanation
Indices: 7803622--7803694 Score: 83
Period size: 35 Copynumber: 2.1 Consensus size: 35
7803612 AGAGTGCGTG
*
7803622 TGATGATATTGAAATGTGCACGTAGGGACTGCACA
1 TGATGATATTGAAATGTGCACGTAGAGACTGCACA
*** ** *
7803657 TGATGATATTGCCTTGTGCGTGTAGAGAGTGCACA
1 TGATGATATTGAAATGTGCACGTAGAGACTGCACA
7803692 TGA
1 TGA
7803695 GTTGAGTAAG
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.29
Consensus pattern (35 bp):
TGATGATATTGAAATGTGCACGTAGAGACTGCACA
Found at i:7811095 original size:38 final size:38
Alignment explanation
Indices: 7811050--7811165 Score: 128
Period size: 38 Copynumber: 3.1 Consensus size: 38
7811040 TTGCATGATC
* *
7811050 TTATGATAGTGCAAGTGTGGATGATTGAATACTCACCT
1 TTATGATAATGCAAGTGTGGATGAATGAATACTCACCT
**
7811088 TTATGATAATGTGAGTGTGGATGAAT-AAGTA-TCCACCT
1 TTATGATAATGCAAGTGTGGATGAATGAA-TACT-CACCT
* * * *
7811126 TTATGTTAATGCATGTATGGATGAATGAATACCCACCT
1 TTATGATAATGCAAGTGTGGATGAATGAATACTCACCT
7811164 TT
1 TT
7811166 GTGACTATGT
Statistics
Matches: 64, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
37 3 0.05
38 59 0.92
39 2 0.03
ACGTcount: A:0.30, C:0.13, G:0.22, T:0.35
Consensus pattern (38 bp):
TTATGATAATGCAAGTGTGGATGAATGAATACTCACCT
Found at i:7811430 original size:37 final size:37
Alignment explanation
Indices: 7811359--7811457 Score: 96
Period size: 37 Copynumber: 2.7 Consensus size: 37
7811349 ACTTACGTCC
* *
7811359 TAGATAATAGAGG-CTATATCATTGTCCGATTATGTCG
1 TAGATAATA-AGGACTATACCATTATCCGATTATGTCG
* *
7811396 TAGATAATAAGGACTATACCATTATCTG-TGTATGTCT
1 TAGATAATAAGGACTATACCATTATCCGAT-TATGTCG
* *
7811433 TAGATAGT-AGGAACTGTACCATTAT
1 TAGATAATAAGG-ACTATACCATTAT
7811458 TCAAGATTGT
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
36 7 0.13
37 46 0.87
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.35
Consensus pattern (37 bp):
TAGATAATAAGGACTATACCATTATCCGATTATGTCG
Found at i:7811474 original size:37 final size:37
Alignment explanation
Indices: 7811428--7811499 Score: 101
Period size: 37 Copynumber: 1.9 Consensus size: 37
7811418 TATCTGTGTA
* *
7811428 TGTCTTAGATAGT-AGGAACTGTACCATTATTCAAGAT
1 TGTCCTAGATAGTGAGGAA-TGTACCATTATCCAAGAT
*
7811465 TGTCCTAGATAGTGGGGAATGTACCATTATCCAAG
1 TGTCCTAGATAGTGAGGAATGTACCATTATCCAAG
7811500 GTTATCTTAG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
37 27 0.87
38 4 0.13
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (37 bp):
TGTCCTAGATAGTGAGGAATGTACCATTATCCAAGAT
Found at i:7819166 original size:54 final size:53
Alignment explanation
Indices: 7819084--7819299 Score: 238
Period size: 54 Copynumber: 4.0 Consensus size: 53
7819074 AAGAAATTTC
*
7819084 CAATCCACTAAAAGGATTTTTGCTTTTTAACAAGATCAAGCGATAACCCTTACA
1 CAATCCAC-AAAAGGATTCTTGCTTTTTAACAAGATCAAGCGATAACCCTTACA
* * * *
7819138 CAATCCATC-AAAGGAACTCTTGCTTTTTAACGATATCAAGTGATAACCCTTACA
1 CAATCCA-CAAAAGG-ATTCTTGCTTTTTAACAAGATCAAGCGATAACCCTTACA
* * * *
7819192 CAATTCACAAAAGGATTCTTACTTTTTTAACAAGATCAAGC-ATTAACTCTTATA
1 CAATCCACAAAAGGATTCTTGC-TTTTTAACAAGATCAAGCGA-TAACCCTTACA
* *** *
7819246 CAATCCACTAAAGGGATTCTTGCTTTTTAAGGGGATCAAGCGATAACCGTTACA
1 CAATCCAC-AAAAGGATTCTTGCTTTTTAACAAGATCAAGCGATAACCCTTACA
7819300 ATGCTTTTTA
Statistics
Matches: 133, Mismatches: 22, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
53 13 0.10
54 106 0.80
55 14 0.11
ACGTcount: A:0.36, C:0.21, G:0.12, T:0.31
Consensus pattern (53 bp):
CAATCCACAAAAGGATTCTTGCTTTTTAACAAGATCAAGCGATAACCCTTACA
Found at i:7819284 original size:108 final size:108
Alignment explanation
Indices: 7819084--7819299 Score: 276
Period size: 108 Copynumber: 2.0 Consensus size: 108
7819074 AAGAAATTTC
* *
7819084 CAATCCACTAAAAGGATTTTTGCTTTTTAACAAGATCAAGCGATAACCCTTACACAATCCATCAA
1 CAATCCACTAAAAGGATTCTTACTTTTTAACAAGATCAAGCGATAACCCTTACACAATCCATCAA
* *
7819149 AGGAACTCTTGCTTTTTAACGATATCAAGTGATAACCCTTACA
66 AGGAACTCTTGCTTTTTAACGAGATCAAGCGATAACCCTTACA
* * *
7819192 CAATTCAC-AAAAGGATTCTTACTTTTTTAACAAGATCAAGC-ATTAACTCTTATACAATCCA-C
1 CAATCCACTAAAAGGATTCTTAC-TTTTTAACAAGATCAAGCGA-TAACCCTTACACAATCCATC
* * * * *
7819254 TAAAGGGATTCTTGCTTTTTAAGGGGATCAAGCGATAACCGTTACA
64 -AAAGGAACTCTTGCTTTTTAACGAGATCAAGCGATAACCCTTACA
7819300 ATGCTTTTTA
Statistics
Matches: 93, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
107 14 0.15
108 79 0.85
ACGTcount: A:0.36, C:0.21, G:0.12, T:0.31
Consensus pattern (108 bp):
CAATCCACTAAAAGGATTCTTACTTTTTAACAAGATCAAGCGATAACCCTTACACAATCCATCAA
AGGAACTCTTGCTTTTTAACGAGATCAAGCGATAACCCTTACA
Found at i:7825031 original size:17 final size:17
Alignment explanation
Indices: 7825009--7825042 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
7824999 AATTCATTGC
7825009 AATTTATAGCA-TTAATT
1 AATTTA-AGCATTTAATT
7825026 AATTTAAGCATTTAATT
1 AATTTAAGCATTTAATT
7825043 TTATATGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.41, C:0.06, G:0.06, T:0.47
Consensus pattern (17 bp):
AATTTAAGCATTTAATT
Found at i:7834252 original size:19 final size:19
Alignment explanation
Indices: 7834230--7834282 Score: 53
Period size: 19 Copynumber: 2.9 Consensus size: 19
7834220 AATAATTTAA
7834230 TAATAAATTATTAAATTAT
1 TAATAAATTATTAAATTAT
7834249 TAAT--ATT-TTAAATCT-T
1 TAATAAATTATTAAAT-TAT
7834265 TAATGAAATTA-TAAATTA
1 TAAT-AAATTATTAAATTA
7834283 AAATATTAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 12
0.70 0.00 0.30
Matches are distributed among these distances:
16 11 0.39
17 4 0.14
18 1 0.04
19 12 0.43
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (19 bp):
TAATAAATTATTAAATTAT
Found at i:7835468 original size:24 final size:24
Alignment explanation
Indices: 7835436--7835483 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
7835426 TGGAGTAAGT
7835436 TTTGAATCATTTCTTGTACATTCA
1 TTTGAATCATTTCTTGTACATTCA
7835460 TTTGAATCATTTCTTGTACATTCA
1 TTTGAATCATTTCTTGTACATTCA
7835484 ATCCAACTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.08, T:0.50
Consensus pattern (24 bp):
TTTGAATCATTTCTTGTACATTCA
Found at i:7835964 original size:20 final size:21
Alignment explanation
Indices: 7835926--7835966 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
7835916 TTGATATTTG
*
7835926 CTCTAGAATTGACTTCTTCTT
1 CTCTAGAATCGACTTCTTCTT
7835947 CTCTAGAATCGA-TTCTTCTT
1 CTCTAGAATCGACTTCTTCTT
7835967 GTAATTAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.20, C:0.24, G:0.10, T:0.46
Consensus pattern (21 bp):
CTCTAGAATCGACTTCTTCTT
Found at i:7836230 original size:26 final size:26
Alignment explanation
Indices: 7836194--7836243 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
7836184 TTTCGTACTT
7836194 AAAAATATCTTTTACT-TTCAAAGCAC
1 AAAAATATCTTTTACTATT-AAAGCAC
7836220 AAAAATATCTTTTACTATTAAAGC
1 AAAAATATCTTTTACTATTAAAGC
7836244 TCATTTAGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.44, C:0.16, G:0.04, T:0.36
Consensus pattern (26 bp):
AAAAATATCTTTTACTATTAAAGCAC
Found at i:7841873 original size:20 final size:20
Alignment explanation
Indices: 7841848--7841893 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
7841838 TTTTGGCCCC
7841848 ATTTGACTCATTGGAGTATA
1 ATTTGACTCATTGGAGTATA
* *
7841868 ATTTGACTTATTGGAGTATG
1 ATTTGACTCATTGGAGTATA
7841888 ATTTGA
1 ATTTGA
7841894 GGTTTATAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.28, C:0.07, G:0.22, T:0.43
Consensus pattern (20 bp):
ATTTGACTCATTGGAGTATA
Found at i:7843139 original size:13 final size:13
Alignment explanation
Indices: 7843121--7843145 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7843111 AGAGAAATTG
7843121 TGATTTTATAAAA
1 TGATTTTATAAAA
7843134 TGATTTTATAAA
1 TGATTTTATAAA
7843146 TTTTCTAGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:7846292 original size:21 final size:21
Alignment explanation
Indices: 7846268--7846318 Score: 102
Period size: 21 Copynumber: 2.4 Consensus size: 21
7846258 CTAGAAAAAC
7846268 ACCTAAAATGCTATGATTTAA
1 ACCTAAAATGCTATGATTTAA
7846289 ACCTAAAATGCTATGATTTAA
1 ACCTAAAATGCTATGATTTAA
7846310 ACCTAAAAT
1 ACCTAAAAT
7846319 CTCAAAGATC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.45, C:0.16, G:0.08, T:0.31
Consensus pattern (21 bp):
ACCTAAAATGCTATGATTTAA
Found at i:7847331 original size:76 final size:73
Alignment explanation
Indices: 7847164--7847350 Score: 193
Period size: 74 Copynumber: 2.5 Consensus size: 73
7847154 TTGGTAAGGG
* * * *
7847164 GAGAGTCG-TCGACAGAGAAGGAAATAGAGATAGAAAGAACGTCGATCAGCGACTTCGAAGAGAA
1 GAGAGCCGCTCGACAGAGAAGGAAATAGAGAGAGAAAGAACGTCGATCAACGACTTCAAAGAGAA
* *
7847228 AGAGAAGG
66 AGAAAAGA
* ** * *
7847236 GAGAGCCGC-C-AGCAGAGAAGGAAATAGAAAGAGAGAAAGAAGGTCTCTCAATGGCTTCAAAGA
1 GAGAGCCGCTCGA-CAGAGAAGGAAATAG--AGAGAGAAAGAACGTCGATCAACGACTTCAAAGA
7847299 GAGAGAGAAAAGA
63 GA-A-AGAAAAGA
*
7847312 GAGAGCC-CTCGACAGAGAAGGAAATGGAGAGAGAAAGAA
1 GAGAGCCGCTCGACAGAGAAGGAAATAGAGAGAGAAAGAA
7847351 AGGAAACTTG
Statistics
Matches: 95, Mismatches: 12, Indels: 14
0.79 0.10 0.12
Matches are distributed among these distances:
71 1 0.01
72 23 0.24
74 40 0.42
75 2 0.02
76 28 0.29
77 1 0.01
ACGTcount: A:0.45, C:0.13, G:0.33, T:0.09
Consensus pattern (73 bp):
GAGAGCCGCTCGACAGAGAAGGAAATAGAGAGAGAAAGAACGTCGATCAACGACTTCAAAGAGAA
AGAAAAGA
Found at i:7855841 original size:19 final size:19
Alignment explanation
Indices: 7855817--7855858 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
7855807 CTTCTTCTCC
7855817 TTCATGCTCCCATGCCATT
1 TTCATGCTCCCATGCCATT
*
7855836 TTCATGCTCCCATGCTATT
1 TTCATGCTCCCATGCCATT
7855855 TTCA
1 TTCA
7855859 CGTTACCACC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.17, C:0.33, G:0.10, T:0.40
Consensus pattern (19 bp):
TTCATGCTCCCATGCCATT
Found at i:7860137 original size:30 final size:32
Alignment explanation
Indices: 7860076--7860139 Score: 78
Period size: 36 Copynumber: 1.9 Consensus size: 32
7860066 TAACCGTGCA
7860076 TGTGCAGTGTGGGAGTGCACGTGACGGTGCCAGTGG
1 TGTGCAGTGTGGGAGTGCAC--GA--GTGCCAGTGG
7860112 TGTGCAGTGTGGGAGTGCAC-A-TGCCAGT
1 TGTGCAGTGTGGGAGTGCACGAGTGCCAGT
7860140 AATGATGTGG
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
30 7 0.25
33 1 0.04
36 20 0.71
ACGTcount: A:0.16, C:0.17, G:0.44, T:0.23
Consensus pattern (32 bp):
TGTGCAGTGTGGGAGTGCACGAGTGCCAGTGG
Found at i:7860263 original size:35 final size:35
Alignment explanation
Indices: 7860163--7860270 Score: 171
Period size: 35 Copynumber: 3.1 Consensus size: 35
7860153 GGAGTACGTG
*
7860163 TGATGATATTGAAATGTGCGTGTAGGGAGTGTACA
1 TGATGATATTGAAATGTGCGTGTAGGGAGTGCACA
*
7860198 TGATGATATTGAAATGCGCGTGTAGGGAGTGCACA
1 TGATGATATTGAAATGTGCGTGTAGGGAGTGCACA
***
7860233 TGATGATATTGCCTTGTGCGTGTAGGGAGTGCACA
1 TGATGATATTGAAATGTGCGTGTAGGGAGTGCACA
7860268 TGA
1 TGA
7860271 GCTGAGTAAG
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 67 1.00
ACGTcount: A:0.26, C:0.10, G:0.34, T:0.30
Consensus pattern (35 bp):
TGATGATATTGAAATGTGCGTGTAGGGAGTGCACA
Found at i:7861334 original size:22 final size:22
Alignment explanation
Indices: 7861307--7861360 Score: 108
Period size: 22 Copynumber: 2.5 Consensus size: 22
7861297 TTTCATATCA
7861307 TGCATTTCACGAGAGCATCATG
1 TGCATTTCACGAGAGCATCATG
7861329 TGCATTTCACGAGAGCATCATG
1 TGCATTTCACGAGAGCATCATG
7861351 TGCATTTCAC
1 TGCATTTCAC
7861361 TCCCGTAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (22 bp):
TGCATTTCACGAGAGCATCATG
Found at i:7864078 original size:21 final size:20
Alignment explanation
Indices: 7864040--7864086 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 20
7864030 GGAAAATAAG
*
7864040 AAAATGAGAATAACAAAAGAA
1 AAAATGAGAATAAGAAAA-AA
7864061 AAAATGA-AATACAGAAAAATA
1 AAAATGAGAATA-AGAAAAA-A
7864082 AAAAT
1 AAAAT
7864087 TATATTAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.72, C:0.04, G:0.11, T:0.13
Consensus pattern (20 bp):
AAAATGAGAATAAGAAAAAA
Found at i:7876325 original size:17 final size:17
Alignment explanation
Indices: 7876293--7876325 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
7876283 TTTTAAATTT
7876293 TGTTTTGTTATATTTGA
1 TGTTTTGTTATATTTGA
7876310 TGTTCTTGTTAT-TTTG
1 TGTT-TTGTTATATTTG
7876326 TTTTGTTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.12, C:0.03, G:0.18, T:0.67
Consensus pattern (17 bp):
TGTTTTGTTATATTTGA
Found at i:7876353 original size:31 final size:31
Alignment explanation
Indices: 7876289--7876353 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 31
7876279 CTAATTTTAA
* * **
7876289 ATTTTGTTTTGTTATATTTGATGTTCTTGTT
1 ATTTTGTTTTGTTATAATTGATGTTATAATT
* *
7876320 ATTTTGTTTTGTTATAATTGTTTTTATAATT
1 ATTTTGTTTTGTTATAATTGATGTTATAATT
7876351 ATT
1 ATT
7876354 GATTTTTAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.18, C:0.02, G:0.12, T:0.68
Consensus pattern (31 bp):
ATTTTGTTTTGTTATAATTGATGTTATAATT
Found at i:7877090 original size:32 final size:32
Alignment explanation
Indices: 7877054--7877159 Score: 108
Period size: 32 Copynumber: 3.2 Consensus size: 32
7877044 TTTACCGGGA
*
7877054 TCAACTAAAACTCAAAGTGGTTTTTCAAAGGC
1 TCAACCAAAACTCAAAGTGGTTTTTCAAAGGC
* **
7877086 TCAACCACAACCTTTCATAA-TGGTTTTTCACGGGC
1 TCAACCA-AAAC--TCA-AAGTGGTTTTTCAAAGGC
*
7877121 TCAACCAAAAC-CTAAAGTAGTTTTTCAAAGGC
1 TCAACCAAAACTC-AAAGTGGTTTTTCAAAGGC
7877153 TCAACCA
1 TCAACCA
7877160 CAACCTACAA
Statistics
Matches: 60, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
31 3 0.05
32 26 0.43
33 3 0.05
34 3 0.05
35 23 0.38
36 2 0.03
ACGTcount: A:0.35, C:0.25, G:0.13, T:0.27
Consensus pattern (32 bp):
TCAACCAAAACTCAAAGTGGTTTTTCAAAGGC
Found at i:7877110 original size:35 final size:33
Alignment explanation
Indices: 7877067--7877165 Score: 121
Period size: 35 Copynumber: 3.0 Consensus size: 33
7877057 ACTAAAACTC
7877067 AAAGTGGTTTTTCAAAGGCTCAACCACAACCTTT
1 AAAGTGGTTTTTCAAAGGCTCAACCACAACC-TT
** *
7877101 CATAA-TGGTTTTTCACGGGCTCAACCAAAACC-T
1 -A-AAGTGGTTTTTCAAAGGCTCAACCACAACCTT
*
7877134 AAAGTAGTTTTTCAAAGGCTCAACCACAACCT
1 AAAGTGGTTTTTCAAAGGCTCAACCACAACCT
7877166 ACAACAATGG
Statistics
Matches: 54, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
31 2 0.04
32 24 0.44
33 1 0.02
35 25 0.46
36 2 0.04
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.27
Consensus pattern (33 bp):
AAAGTGGTTTTTCAAAGGCTCAACCACAACCTT
Found at i:7877131 original size:67 final size:67
Alignment explanation
Indices: 7877021--7877199 Score: 220
Period size: 67 Copynumber: 2.7 Consensus size: 67
7877011 TACCAAGCTT
* * *
7877021 AACCAAAACCTTTCACAATGGTTTTTACCGGGATCAACTAAAA-CTCAAAGTGGTTTTTCAAAGG
1 AACCACAACCTTTCACAATGGTTTTTACCGGGATCAACCAAAACCT-AAAGTAGTTTTTCAAAGG
7877085 CTC
65 CTC
* *
7877088 AACCACAACCTTTCATAATGGTTTTT-CACGGGCTCAACCAAAACCTAAAGTAGTTTTTCAAAGG
1 AACCACAACCTTTCACAATGGTTTTTAC-CGGGATCAACCAAAACCTAAAGTAGTTTTTCAAAGG
7877152 CTC
65 CTC
* ** * *
7877155 AACCACAACC-TACAACAATGGTTTTTAATGGGATCGATCAAAACC
1 AACCACAACCTTTC-ACAATGGTTTTTACCGGGATCAACCAAAACC
7877200 CAACAACTAA
Statistics
Matches: 96, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
66 3 0.03
67 91 0.95
68 2 0.02
ACGTcount: A:0.35, C:0.24, G:0.14, T:0.27
Consensus pattern (67 bp):
AACCACAACCTTTCACAATGGTTTTTACCGGGATCAACCAAAACCTAAAGTAGTTTTTCAAAGGC
TC
Found at i:7877165 original size:32 final size:32
Alignment explanation
Indices: 7877067--7877166 Score: 121
Period size: 32 Copynumber: 3.0 Consensus size: 32
7877057 ACTAAAACTC
7877067 AAAGTGGTTTTTCAAAGGCTCAACCACAACCTTT
1 AAAGTGGTTTTTCAAAGGCTCAACCACAACC--T
** *
7877101 CATAA-TGGTTTTTCACGGGCTCAACCAAAACCT
1 -A-AAGTGGTTTTTCAAAGGCTCAACCACAACCT
*
7877134 AAAGTAGTTTTTCAAAGGCTCAACCACAACCT
1 AAAGTGGTTTTTCAAAGGCTCAACCACAACCT
7877166 A
1 A
7877167 CAACAATGGT
Statistics
Matches: 56, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
31 2 0.04
32 26 0.46
33 1 0.02
35 25 0.45
36 2 0.04
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (32 bp):
AAAGTGGTTTTTCAAAGGCTCAACCACAACCT
Found at i:7877790 original size:72 final size:73
Alignment explanation
Indices: 7877614--7877808 Score: 227
Period size: 73 Copynumber: 2.7 Consensus size: 73
7877604 AATTGCGGAT
* * **
7877614 AGAGAGC-TCTTAGTCGACTAACTTTCTTCTTAGTCGACTAAGTTGGTTCTGTCTTCTGGTTGCA
1 AGAGAGCAT-TTAGTCGACTAACTCTCTTCTTGGTCGACTAAGTTGGTTCTGTCTTCAAGTTGCA
*
7877678 GATTTTAGT
65 GATTTTAGC
* * *
7877687 AGAGAGCATTTAGTCGATTAACTCAT-TTCTTGGTGGACTAAGTTGGTTCTGTCTTGAAGTT-CA
1 AGAGAGCATTTAGTCGACTAACTC-TCTTCTTGGTCGACTAAGTTGGTTCTGTCTTCAAGTTGCA
*
7877750 GATTTTGGC
65 GATTTTAGC
* * *
7877759 AG-TAGCTTTTTAGTCGACTAACTCTCATCTTGGTCGACTAAGTTGGTTCT
1 AGAGAGC-ATTTAGTCGACTAACTCTCTTCTTGGTCGACTAAGTTGGTTCT
7877809 ATTTCTCAAT
Statistics
Matches: 104, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
71 4 0.04
72 48 0.46
73 50 0.48
74 2 0.02
ACGTcount: A:0.21, C:0.17, G:0.23, T:0.40
Consensus pattern (73 bp):
AGAGAGCATTTAGTCGACTAACTCTCTTCTTGGTCGACTAAGTTGGTTCTGTCTTCAAGTTGCAG
ATTTTAGC
Found at i:7881975 original size:24 final size:25
Alignment explanation
Indices: 7881930--7881976 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
7881920 ATTTAAACAA
7881930 TTATTGCAAATAAAAGATTAGTTGT
1 TTATTGCAAATAAAAGATTAGTTGT
*
7881955 TTATT-CAAA-AAAATATATAGTT
1 TTATTGCAAATAAAAGAT-TAGTT
7881977 CAATAAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 6 0.30
24 9 0.45
25 5 0.25
ACGTcount: A:0.45, C:0.04, G:0.11, T:0.40
Consensus pattern (25 bp):
TTATTGCAAATAAAAGATTAGTTGT
Found at i:7882462 original size:15 final size:14
Alignment explanation
Indices: 7882442--7882472 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
7882432 TGGTTTAAAA
7882442 AATAATAATAAAATT
1 AATAATAAT-AAATT
7882457 AATAATAATAAATT
1 AATAATAATAAATT
7882471 AA
1 AA
7882473 AAAGAAAGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.44
15 9 0.56
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (14 bp):
AATAATAATAAATT
Found at i:7884875 original size:26 final size:26
Alignment explanation
Indices: 7884819--7884877 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
7884809 GGCCGGCCAT
* *
7884819 AAGGAAAGAACAAGAGAGAAAATAGA
1 AAGGAAAGAACAAAAGAGAAAATACA
* *
7884845 GAGGAAAGGAAGAAAAGAGAAAA-ACA
1 AAGGAAA-GAACAAAAGAGAAAATACA
7884871 AAGGAAA
1 AAGGAAA
7884878 ACTAGAAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
26 14 0.52
27 13 0.48
ACGTcount: A:0.66, C:0.03, G:0.29, T:0.02
Consensus pattern (26 bp):
AAGGAAAGAACAAAAGAGAAAATACA
Found at i:7892732 original size:26 final size:26
Alignment explanation
Indices: 7892676--7892734 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
7892666 GGCCGGCCAT
* *
7892676 AAGGAAAGAACAAGAGAGAAAATAGA
1 AAGGAAAGAACAAAAGAGAAAATACA
* *
7892702 GAGGAAAGGAAGAAAAGAGAAAA-ACA
1 AAGGAAA-GAACAAAAGAGAAAATACA
7892728 AAGGAAA
1 AAGGAAA
7892735 ACTAGAAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
26 14 0.52
27 13 0.48
ACGTcount: A:0.66, C:0.03, G:0.29, T:0.02
Consensus pattern (26 bp):
AAGGAAAGAACAAAAGAGAAAATACA
Found at i:7901865 original size:21 final size:21
Alignment explanation
Indices: 7901841--7901902 Score: 97
Period size: 21 Copynumber: 3.0 Consensus size: 21
7901831 TTGAATGATT
*
7901841 GCATCAGTCTTTGTCATGAAG
1 GCATTAGTCTTTGTCATGAAG
* *
7901862 GCATTTGTTTTTGTCATGAAG
1 GCATTAGTCTTTGTCATGAAG
7901883 GCATTAGTCTTTGTCATGAA
1 GCATTAGTCTTTGTCATGAA
7901903 TTGCATGATC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.23, C:0.15, G:0.23, T:0.40
Consensus pattern (21 bp):
GCATTAGTCTTTGTCATGAAG
Found at i:7920110 original size:3 final size:3
Alignment explanation
Indices: 7920102--7920128 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
7920092 CATTGAGAAA
7920102 ATG ATG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG
7920129 GAAAAGAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
ATG
Found at i:7920895 original size:4 final size:4
Alignment explanation
Indices: 7920886--7920917 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
7920876 ATTATAAAAA
7920886 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT
7920918 TAATTGAAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
ATTT
Found at i:7932338 original size:103 final size:102
Alignment explanation
Indices: 7932158--7932363 Score: 367
Period size: 103 Copynumber: 2.0 Consensus size: 102
7932148 TGCCACCCAA
* *
7932158 GGGCAAAATTAGAATGTTACACCACCCAACACTTGTCAAGCCCTCGAATTTTTCTTATTATACTT
1 GGGCAAAATTAGAATGTTACACCACCCAACACTTGTCAAGCCCTCGAATTTTACCTATTATACTT
7932223 TGGATAATTGAGATATTTTATGTGGTGGTGGGAGAAT
66 TGGATAATTGAGATATTTTATGTGGTGGTGGGAGAAT
* *
7932260 GNGGCAAAATTAGAATTTTACACCACCCAACACTTGTCAAGCCCTTGAATTTTACCTATTATACT
1 G-GGCAAAATTAGAATGTTACACCACCCAACACTTGTCAAGCCCTCGAATTTTACCTATTATACT
7932325 TTGGATAATTGAGATATTTTATGTGGTGGTGGGAGAAT
65 TTGGATAATTGAGATATTTTATGTGGTGGTGGGAGAAT
7932363 G
1 G
7932364 CTTAATTATT
Statistics
Matches: 99, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
102 1 0.01
103 98 0.99
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (102 bp):
GGGCAAAATTAGAATGTTACACCACCCAACACTTGTCAAGCCCTCGAATTTTACCTATTATACTT
TGGATAATTGAGATATTTTATGTGGTGGTGGGAGAAT
Found at i:7939948 original size:14 final size:15
Alignment explanation
Indices: 7939929--7939957 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7939919 TTACGTAGCG
7939929 TTTTAT-AAAAATTA
1 TTTTATGAAAAATTA
7939943 TTTTATGAAAAATTA
1 TTTTATGAAAAATTA
7939958 GAATATTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (15 bp):
TTTTATGAAAAATTA
Found at i:7941542 original size:108 final size:107
Alignment explanation
Indices: 7941353--7941564 Score: 406
Period size: 108 Copynumber: 2.0 Consensus size: 107
7941343 GATTTTGTTG
7941353 TATTTCATGTTTTTTAGCTCGTAATTGATGATTTATGGTATCGGATATCGAAAATGGCTATCGAA
1 TATTTCATGTTTTTTAGCTCGTAATTGATGATTTATGGTATCGGATATCGAAAATGGCTATCGAA
7941418 AAGTATAGTCCCTTTAGTAAACGACTTGAACAATAATGAAGA
66 AAGTATAGTCCCTTTAGTAAACGACTTGAACAATAATGAAGA
7941460 NTATTTCATGTTTTTTAGCTCGTAATTGATGATTTATGGTATCGGATATCGAAAATGGCTATCGA
1 -TATTTCATGTTTTTTAGCTCGTAATTGATGATTTATGGTATCGGATATCGAAAATGGCTATCGA
*
7941525 AAAGTATAGTTCCTTTAGTAAACGACTTGAACAATAATGA
65 AAAGTATAGTCCCTTTAGTAAACGACTTGAACAATAATGA
7941565 GAAAATCATA
Statistics
Matches: 103, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
108 103 1.00
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.36
Consensus pattern (107 bp):
TATTTCATGTTTTTTAGCTCGTAATTGATGATTTATGGTATCGGATATCGAAAATGGCTATCGAA
AAGTATAGTCCCTTTAGTAAACGACTTGAACAATAATGAAGA
Found at i:7955601 original size:108 final size:108
Alignment explanation
Indices: 7955481--7955682 Score: 332
Period size: 108 Copynumber: 1.9 Consensus size: 108
7955471 ATTTTCAATC
* * * *
7955481 AATTTAAATAAAAGGTAAATTGGGTAAGAGTTGAATAATTTTAAAAGAATGTGTATTTGTAAATT
1 AATTTAAATAAAAAGTAAATTGGGTAAGAGTTGAATAAGTTCAAAAAAATGTGTATTTGTAAATT
* * *
7955546 GTGAAAGTTATAACTATATTAACATATTTTGCTAATTTGAGTA
66 ATGAAAGTTATAACTAAATCAACATATTTTGCTAATTTGAGTA
7955589 AATTTAAATAAAAAGTAAATTGGGTAAGAGTTGAATAAGTTCAAAAAAATGTGTATTTGTAAATT
1 AATTTAAATAAAAAGTAAATTGGGTAAGAGTTGAATAAGTTCAAAAAAATGTGTATTTGTAAATT
*
7955654 ATGAAAGTTGTAACTAAATCAACATATTT
66 ATGAAAGTTATAACTAAATCAACATATTT
7955683 AGTCATTTTA
Statistics
Matches: 86, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
108 86 1.00
ACGTcount: A:0.44, C:0.03, G:0.16, T:0.37
Consensus pattern (108 bp):
AATTTAAATAAAAAGTAAATTGGGTAAGAGTTGAATAAGTTCAAAAAAATGTGTATTTGTAAATT
ATGAAAGTTATAACTAAATCAACATATTTTGCTAATTTGAGTA
Found at i:7956139 original size:31 final size:31
Alignment explanation
Indices: 7956103--7956177 Score: 100
Period size: 31 Copynumber: 2.4 Consensus size: 31
7956093 AGCATGTCAG
7956103 TGCCACATCATTA-TAT-AGTGCCACGTGGCAT
1 TGCCACATCATTACT-TGA-TGCCACGTGGCAT
*
7956134 TGCCACATCATCACTTGATGCCACGTGGCAT
1 TGCCACATCATTACTTGATGCCACGTGGCAT
*
7956165 TACCACATCATTA
1 TGCCACATCATTA
7956178 AAATGTGACA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
31 37 0.95
32 2 0.05
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.28
Consensus pattern (31 bp):
TGCCACATCATTACTTGATGCCACGTGGCAT
Found at i:7958546 original size:2 final size:2
Alignment explanation
Indices: 7958541--7958578 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
7958531 ATACTTGTGT
7958541 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7958579 NNNNNNNNNN
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7958805 original size:2 final size:2
Alignment explanation
Indices: 7958798--7958833 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
7958788 NNNNNNNNNN
7958798 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7958834 GTTTTGACAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7959844 original size:20 final size:20
Alignment explanation
Indices: 7959802--7959844 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
7959792 AAATGGATGA
*
7959802 TTTAGATACCTAAATTTATT
1 TTTAGATACCTAAATGTATT
*
7959822 TTTAGATATC-AAATGTATAT
1 TTTAGATACCTAAATGTAT-T
7959842 TTT
1 TTT
7959845 TCATTTATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.35, C:0.07, G:0.07, T:0.51
Consensus pattern (20 bp):
TTTAGATACCTAAATGTATT
Found at i:7962388 original size:16 final size:16
Alignment explanation
Indices: 7962367--7962398 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
7962357 TGAGCCTTGT
7962367 TTTAATAAAAGACATA
1 TTTAATAAAAGACATA
7962383 TTTAATAAAAGACATA
1 TTTAATAAAAGACATA
7962399 AGCCTTAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.31
Consensus pattern (16 bp):
TTTAATAAAAGACATA
Found at i:7968115 original size:19 final size:20
Alignment explanation
Indices: 7968091--7968130 Score: 73
Period size: 19 Copynumber: 2.0 Consensus size: 20
7968081 CCATTTGACT
7968091 TATTGGAGTATGATTT-AAG
1 TATTGGAGTATGATTTGAAG
7968110 TATTGGAGTATGATTTGAAG
1 TATTGGAGTATGATTTGAAG
7968130 T
1 T
7968131 TTAGAAGTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.30, C:0.00, G:0.28, T:0.42
Consensus pattern (20 bp):
TATTGGAGTATGATTTGAAG
Found at i:7969241 original size:13 final size:13
Alignment explanation
Indices: 7969223--7969247 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7969213 GGAAAATGAG
7969223 ATTTTATAAAATA
1 ATTTTATAAAATA
7969236 ATTTTATAAAAT
1 ATTTTATAAAAT
7969248 TTTTGAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
ATTTTATAAAATA
Found at i:7974196 original size:8 final size:9
Alignment explanation
Indices: 7974146--7974196 Score: 57
Period size: 9 Copynumber: 5.4 Consensus size: 9
7974136 AAAACTAATA
7974146 AAAAATTTT
1 AAAAATTTT
7974155 AAAAATTTT
1 AAAAATTTT
* **
7974164 ATATAATATAA
1 A-AAAAT-TTT
7974175 AAAAATTTT
1 AAAAATTTT
7974184 AAAAATTTT
1 AAAAATTTT
7974193 AAAA
1 AAAA
7974197 GGTCAAAAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
9 24 0.71
10 8 0.24
11 2 0.06
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (9 bp):
AAAAATTTT
Found at i:7984357 original size:29 final size:29
Alignment explanation
Indices: 7984302--7984357 Score: 78
Period size: 28 Copynumber: 1.9 Consensus size: 29
7984292 GACAAGTGTT
*
7984302 GGGTGTGTAAAATTACAATTTTGCCCTTG
1 GGGTGTGTAAAATTACAATTTTCCCCTTG
*
7984331 GGGTG-GTAAAATTACCATTTTACCCCT
1 GGGTGTGTAAAATTACAATTTT-CCCCT
7984358 ATGCTCCGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 15 0.62
29 9 0.38
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.36
Consensus pattern (29 bp):
GGGTGTGTAAAATTACAATTTTCCCCTTG
Found at i:8026624 original size:13 final size:13
Alignment explanation
Indices: 8026606--8026630 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8026596 TTTCAGAAAA
8026606 TTTATAAAATCAT
1 TTTATAAAATCAT
8026619 TTTATAAAATCA
1 TTTATAAAATCA
8026631 CAATTTCTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTATAAAATCAT
Found at i:8027873 original size:20 final size:20
Alignment explanation
Indices: 8027856--8027893 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
8027846 CCTCAAATCT
8027856 TACTCCAATAAGTCAAATTA
1 TACTCCAATAAGTCAAATTA
8027876 TACTCCAATAAGTCAAAT
1 TACTCCAATAAGTCAAAT
8027894 GGGGCCAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.45, C:0.21, G:0.05, T:0.29
Consensus pattern (20 bp):
TACTCCAATAAGTCAAATTA
Found at i:8029507 original size:14 final size:16
Alignment explanation
Indices: 8029485--8029521 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
8029475 TGCGGAGCCT
8029485 CTCTCTTGT-T-GACC
1 CTCTCTTGTGTAGACC
*
8029499 CTTTCTTGTGTAGACC
1 CTCTCTTGTGTAGACC
8029515 CTCTCTT
1 CTCTCTT
8029522 ATGCCGAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
14 8 0.42
15 1 0.05
16 10 0.53
ACGTcount: A:0.08, C:0.32, G:0.14, T:0.46
Consensus pattern (16 bp):
CTCTCTTGTGTAGACC
Found at i:8034123 original size:42 final size:42
Alignment explanation
Indices: 8034061--8034486 Score: 582
Period size: 42 Copynumber: 10.0 Consensus size: 42
8034051 TGTTGATTTG
* *
8034061 GACCCGACTATGTGCTAGTGGGAGTGCACATAAGCCGTTGCT
1 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
8034103 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
1 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
*
8034145 GACCCGGCTATGTGTGAGTGGGAGTGCACATAAGCCGTTGCT
1 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
* * * * * *
8034187 GATCTGGCTATGTGCGAGTAGTAGGGAACATAAGCCGTTGCT
1 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
** *
8034229 GACTTGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCT
1 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
* *
8034271 GACCCGCTGACTCGGCTATGTGTGAGTGGGAGGGCACATAAGCCGTTGCT
1 GA----C---C-CGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
* * *
8034321 GACCCGGCTATGTGCTAGTGGGAGTGAACATAAGCTGTTGCT
1 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
*
8034363 GACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCT
1 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
* * *
8034405 GACCCGACTATGTGCGAGTAGGAGTGCATATAAGCCGTTGCT
1 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
*
8034447 GACCCGGCTATGTGTGAGTGGGAGTGCACATAAGCCGTTG
1 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTG
8034487 TTGCCCCCAT
Statistics
Matches: 341, Mismatches: 35, Indels: 16
0.87 0.09 0.04
Matches are distributed among these distances:
42 302 0.89
43 1 0.00
46 2 0.01
50 36 0.11
ACGTcount: A:0.21, C:0.21, G:0.34, T:0.24
Consensus pattern (42 bp):
GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
Found at i:8034354 original size:176 final size:172
Alignment explanation
Indices: 8034061--8034486 Score: 609
Period size: 176 Copynumber: 2.5 Consensus size: 172
8034051 TGTTGATTTG
* * *
8034061 GACCCGACTATGTGCTAGTGGGAGTGCACATAAGCCGTTGCTGA-C---CCGGCTATGTGCGAGT
1 GACCCGACTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCTGAGCTGACCGGCTATGTGTGAGT
*
8034122 GGGAGTGCACATAAGCCGTTGCTGACCCGGCTATGTGTGAGTGGGAGTGCACATAAGCCGTTGCT
66 GGGAGTGCACATAAGCCGTTGCTGACCCGGCTATGTGTGAGTGGGAGTGAACATAAGCCGTTGCT
* * *
8034187 GATCTGGCTATGTGCGAGTAGTAGGGAACATAAGCCGTTGCT
131 GACCCGGCTATGTGCGAGTAGGAGGGAACATAAGCCGTTGCT
** *
8034229 GACTTGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCTGACCCGCTGACTCGGCTATGTGT
1 GACCCGACTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCTGA---GCTGAC-CGGCTATGTGT
* *
8034294 GAGTGGGAGGGCACATAAGCCGTTGCTGACCCGGCTATGTGCT-AGTGGGAGTGAACATAAGCTG
62 GAGTGGGAGTGCACATAAGCCGTTGCTGACCCGGCTATGTG-TGAGTGGGAGTGAACATAAGCCG
* *
8034358 TTGCTGACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCT
126 TTGCTGACCCGGCTATGTGCGAGTAGGAGGGAACATAAGCCGTTGCT
*
8034405 GACCCGACTATGTGCGAGTAGGAGTGCATATAAGCCGTTGCTGA-C---CCGGCTATGTGTGAGT
1 GACCCGACTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCTGAGCTGACCGGCTATGTGTGAGT
8034466 GGGAGTGCACATAAGCCGTTG
66 GGGAGTGCACATAAGCCGTTG
8034487 TTGCCCCCAT
Statistics
Matches: 230, Mismatches: 19, Indels: 18
0.86 0.07 0.07
Matches are distributed among these distances:
168 74 0.32
169 1 0.00
172 2 0.01
175 1 0.00
176 151 0.66
177 1 0.00
ACGTcount: A:0.21, C:0.21, G:0.34, T:0.24
Consensus pattern (172 bp):
GACCCGACTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCTGAGCTGACCGGCTATGTGTGAGT
GGGAGTGCACATAAGCCGTTGCTGACCCGGCTATGTGTGAGTGGGAGTGAACATAAGCCGTTGCT
GACCCGGCTATGTGCGAGTAGGAGGGAACATAAGCCGTTGCT
Found at i:8034446 original size:218 final size:218
Alignment explanation
Indices: 8034068--8034486 Score: 669
Period size: 218 Copynumber: 1.9 Consensus size: 218
8034058 TTGGACCCGA
* *
8034068 CTATGTGCTAGTGGGAGTGCACATAAGCCGTTGCTGACCCGGCTATGTGCGAGTGGGAGTGCACA
1 CTATGTGCTAGTGGGAGGGCACATAAGCCGTTGCTGACCCGGCTATGTGCGAGTGGGAGTGAACA
* * * * *
8034133 TAAGCCGTTGCTGACCCGGCTATGTGTGAGTGGGAGTGCACATAAGCCGTTGCTGATCTGGCTAT
66 TAAGCCGTTGCTGACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCTGACCCGACTAT
* **
8034198 GTGCGAGTAGTAGGGAACATAAGCCGTTGCTGACTTGGCTATGTGCGAGTAGGAGTGCACATAAG
131 GTGCGAGTAGGAGGGAACATAAGCCGTTGCTGACCCGGCTATGTGCGAGTAGGAGTGCACATAAG
8034263 CCGTTGCTGACCCGCTGACTCGG
196 CCGTTGCTGACCCGCTGACTCGG
*
8034286 CTATGTG-TGAGTGGGAGGGCACATAAGCCGTTGCTGACCCGGCTATGTGCTAGTGGGAGTGAAC
1 CTATGTGCT-AGTGGGAGGGCACATAAGCCGTTGCTGACCCGGCTATGTGCGAGTGGGAGTGAAC
*
8034350 ATAAGCTGTTGCTGACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCTGACCCGACTA
65 ATAAGCCGTTGCTGACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCTGACCCGACTA
* * * * *
8034415 TGTGCGAGTAGGAGTGCATATAAGCCGTTGCTGACCCGGCTATGTGTGAGTGGGAGTGCACATAA
130 TGTGCGAGTAGGAGGGAACATAAGCCGTTGCTGACCCGGCTATGTGCGAGTAGGAGTGCACATAA
8034480 GCCGTTG
195 GCCGTTG
8034487 TTGCCCCCAT
Statistics
Matches: 183, Mismatches: 17, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
217 1 0.01
218 182 0.99
ACGTcount: A:0.21, C:0.21, G:0.34, T:0.24
Consensus pattern (218 bp):
CTATGTGCTAGTGGGAGGGCACATAAGCCGTTGCTGACCCGGCTATGTGCGAGTGGGAGTGAACA
TAAGCCGTTGCTGACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCTGACCCGACTAT
GTGCGAGTAGGAGGGAACATAAGCCGTTGCTGACCCGGCTATGTGCGAGTAGGAGTGCACATAAG
CCGTTGCTGACCCGCTGACTCGG
Found at i:8034757 original size:26 final size:26
Alignment explanation
Indices: 8034721--8034782 Score: 106
Period size: 26 Copynumber: 2.4 Consensus size: 26
8034711 TTGCATATGA
8034721 GATGATGATGATGGGATGATGTGCAT
1 GATGATGATGATGGGATGATGTGCAT
*
8034747 GATGATGATGATGGGATGGTGTGCAT
1 GATGATGATGATGGGATGATGTGCAT
*
8034773 GTTGATGATG
1 GATGATGATG
8034783 GGTATATGGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.24, C:0.03, G:0.40, T:0.32
Consensus pattern (26 bp):
GATGATGATGATGGGATGATGTGCAT
Found at i:8035854 original size:17 final size:16
Alignment explanation
Indices: 8035828--8035859 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
8035818 GTAAGAATAT
8035828 CACCTAAGACAAGTGC
1 CACCTAAGACAAGTGC
8035844 CACCTTAAGACAAGTG
1 CACC-TAAGACAAGTG
8035860 GGGGAGCAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.38, C:0.28, G:0.19, T:0.16
Consensus pattern (16 bp):
CACCTAAGACAAGTGC
Found at i:8038371 original size:42 final size:42
Alignment explanation
Indices: 8038312--8038737 Score: 573
Period size: 42 Copynumber: 10.1 Consensus size: 42
8038302 TGTTGATTTG
*** ** *
8038312 GACCCGGCTATGTGCGAGTACAAGTGCACATAAGCTATTGTT
1 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
** * * *
8038354 GACCCACCTATGTGCGAGTGGGGGTGCACATAAGTCATTGCT
1 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
*
8038396 GACCTGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
1 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
* * *
8038438 GACCCGGTTATGTGAGAGTGGGAGTGCACATAAGCCGTTGTT
1 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
*
8038480 GACCCGGCTATGTGAGAGTGGGAGTGCACATAAGCCGTTGCT
1 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
* * ** * *
8038522 GACCCGACTATGTGTGAGTAAGAGTGCACATAAGACGCTGCT
1 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
**
8038564 GACCCGATTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
1 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
* *
8038606 GACCCGGCTCTGTGGGAGTGGGAGTGCACATAAGCCGTTGCT
1 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
* * *
8038648 GACTCGGCTCTGTGGGAGTGGGAGTGCACATAAGCCGTTGCT
1 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
* *
8038690 GACCCGGCTATGTGTGAGTGGGAGTGTACATAAGCCGTTGCT
1 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
8038732 GACCCG
1 GACCCG
8038738 ATTATATGCG
Statistics
Matches: 342, Mismatches: 42, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 342 1.00
ACGTcount: A:0.21, C:0.22, G:0.34, T:0.23
Consensus pattern (42 bp):
GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCGTTGCT
Found at i:8038754 original size:30 final size:30
Alignment explanation
Indices: 8038718--8038790 Score: 110
Period size: 30 Copynumber: 2.4 Consensus size: 30
8038708 TGGGAGTGTA
* *
8038718 CATAAGCCGTTGCTGACCCGATTATATGCG
1 CATAAGCTGTTGCTGACCCGACTATATGCG
* *
8038748 CATAAGCTGTTGCTGATCCGGCTATATGCG
1 CATAAGCTGTTGCTGACCCGACTATATGCG
8038778 CATAAGCTGTTGC
1 CATAAGCTGTTGC
8038791 ATATGAGATG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.22, C:0.25, G:0.25, T:0.29
Consensus pattern (30 bp):
CATAAGCTGTTGCTGACCCGACTATATGCG
Found at i:8038833 original size:26 final size:26
Alignment explanation
Indices: 8038797--8038858 Score: 115
Period size: 26 Copynumber: 2.4 Consensus size: 26
8038787 TTGCATATGA
8038797 GATGATGATGATGGGATGGTGTGCAT
1 GATGATGATGATGGGATGGTGTGCAT
8038823 GATGATGATGATGGGATGGTGTGCAT
1 GATGATGATGATGGGATGGTGTGCAT
*
8038849 GTTGATGATG
1 GATGATGATG
8038859 GGTATATGGT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.23, C:0.03, G:0.42, T:0.32
Consensus pattern (26 bp):
GATGATGATGATGGGATGGTGTGCAT
Found at i:8040274 original size:34 final size:35
Alignment explanation
Indices: 8040204--8040295 Score: 141
Period size: 35 Copynumber: 2.6 Consensus size: 35
8040194 GAGAAGAGTA
* *
8040204 GTTTTAGCTACTGATTTTGAAGGTTGAAAGGTGCG
1 GTTTTGGCTGCTGATTTTGAAGGTTGAAAGGTGCG
*
8040239 GTTTTGGCTGTTGATTTTGAAGGTTG-AAGGTGCG
1 GTTTTGGCTGCTGATTTTGAAGGTTGAAAGGTGCG
8040273 GTTTTGGCTGCTGATCTTTGAAG
1 GTTTTGGCTGCTGAT-TTTGAAG
8040296 CTTTGGTTGC
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
34 22 0.42
35 30 0.58
ACGTcount: A:0.17, C:0.09, G:0.34, T:0.40
Consensus pattern (35 bp):
GTTTTGGCTGCTGATTTTGAAGGTTGAAAGGTGCG
Found at i:8043158 original size:19 final size:19
Alignment explanation
Indices: 8043134--8043170 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
8043124 CTTCTAAACT
8043134 TCAAATCATACTCCAATAC
1 TCAAATCATACTCCAATAC
8043153 TCAAATCATACTCCAATA
1 TCAAATCATACTCCAATA
8043171 AGTCAAATGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.43, C:0.30, G:0.00, T:0.27
Consensus pattern (19 bp):
TCAAATCATACTCCAATAC
Found at i:8045228 original size:15 final size:15
Alignment explanation
Indices: 8045208--8045258 Score: 61
Period size: 15 Copynumber: 3.4 Consensus size: 15
8045198 TTCTTAAAAC
8045208 AACTTTAAAA-CCGAA
1 AACTTTAAAATCC-AA
8045223 AACTTTAAAATCCAA
1 AACTTTAAAATCCAA
*
8045238 AGCTTTAAAAT-CAA
1 AACTTTAAAATCCAA
8045252 AATCTTT
1 AA-CTTT
8045259 GATCTTTAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
14 4 0.12
15 26 0.81
16 2 0.06
ACGTcount: A:0.49, C:0.18, G:0.04, T:0.29
Consensus pattern (15 bp):
AACTTTAAAATCCAA
Found at i:8046719 original size:18 final size:21
Alignment explanation
Indices: 8046692--8046736 Score: 60
Period size: 18 Copynumber: 2.3 Consensus size: 21
8046682 TATAAATCTC
*
8046692 ATTTTTATTA-AAAA-A-AAT
1 ATTTTAATTAGAAAACATAAT
8046710 ATTTTAATTAGAAAACATAAT
1 ATTTTAATTAGAAAACATAAT
8046731 ATTTTA
1 ATTTTA
8046737 TAATGTAAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 9 0.39
19 4 0.17
20 1 0.04
21 9 0.39
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (21 bp):
ATTTTAATTAGAAAACATAAT
Found at i:8050212 original size:15 final size:15
Alignment explanation
Indices: 8050192--8050242 Score: 61
Period size: 15 Copynumber: 3.4 Consensus size: 15
8050182 TTCTGAAAAC
8050192 AACTTTAAAA-CCGAA
1 AACTTTAAAATCC-AA
8050207 AACTTTAAAATCCAA
1 AACTTTAAAATCCAA
*
8050222 AGCTTTAAAAT-CAA
1 AACTTTAAAATCCAA
8050236 AATCTTT
1 AA-CTTT
8050243 GATCTTTAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
14 4 0.12
15 26 0.81
16 2 0.06
ACGTcount: A:0.49, C:0.18, G:0.04, T:0.29
Consensus pattern (15 bp):
AACTTTAAAATCCAA
Found at i:8052814 original size:19 final size:19
Alignment explanation
Indices: 8052790--8052826 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
8052780 CTTCTAAACT
8052790 TCAAATCATACTCCAATAC
1 TCAAATCATACTCCAATAC
8052809 TCAAATCATACTCCAATA
1 TCAAATCATACTCCAATA
8052827 AGTCAAATGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.43, C:0.30, G:0.00, T:0.27
Consensus pattern (19 bp):
TCAAATCATACTCCAATAC
Found at i:8053207 original size:5 final size:5
Alignment explanation
Indices: 8053190--8053228 Score: 60
Period size: 5 Copynumber: 7.6 Consensus size: 5
8053180 GAGAGAGGAG
*
8053190 AAAGA GAAAGA AAGGA AAAGA AAAGA AAAGA AAAGA AAA
1 AAAGA -AAAGA AAAGA AAAGA AAAGA AAAGA AAAGA AAA
8053229 TATAAAATTG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
5 26 0.84
6 5 0.16
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (5 bp):
AAAGA
Found at i:8053214 original size:15 final size:15
Alignment explanation
Indices: 8053185--8053228 Score: 61
Period size: 15 Copynumber: 2.8 Consensus size: 15
8053175 GGCGGGAGAG
8053185 AGGAGAAAGAGAAAGAA
1 AGGA-AAAGA-AAAGAA
8053202 AGGAAAAGAAAAGAA
1 AGGAAAAGAAAAGAA
*
8053217 AAGAAAAGAAAA
1 AGGAAAAGAAAA
8053229 TATAAAATTG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
15 17 0.65
16 5 0.19
17 4 0.15
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (15 bp):
AGGAAAAGAAAAGAA
Found at i:8062115 original size:35 final size:35
Alignment explanation
Indices: 8062041--8062117 Score: 93
Period size: 35 Copynumber: 2.2 Consensus size: 35
8062031 AGTTGTTGAG
*
8062041 TTTGAAGGCTGACAAGTGCGATTTTGGATGCTGAT
1 TTTGAAGGCTGACAAGTGCGATTTTGGATGCTAAT
* * * *
8062076 TTTGAAGGCTGA-AGGTGTGGTTTTGGCTGCTAAT
1 TTTGAAGGCTGACAAGTGCGATTTTGGATGCTAAT
8062110 CTTTGAAG
1 -TTTGAAG
8062118 CTTTGGCTAC
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
34 17 0.47
35 19 0.53
ACGTcount: A:0.21, C:0.10, G:0.32, T:0.36
Consensus pattern (35 bp):
TTTGAAGGCTGACAAGTGCGATTTTGGATGCTAAT
Found at i:8062176 original size:36 final size:35
Alignment explanation
Indices: 8062132--8062225 Score: 104
Period size: 35 Copynumber: 2.7 Consensus size: 35
8062122 GGCTACAGAG
* *
8062132 TTTT-GAGGGAGGAA-AGAAGCAGCTTAGCTGCTGAT
1 TTTTGGAGGGA-GAATAG-AGCAGCTTAGCTACTAAT
*
8062167 TTTTGGAGGGAGAATAGAGTAGCTTAGCTACTAAT
1 TTTTGGAGGGAGAATAGAGCAGCTTAGCTACTAAT
* *
8062202 TTTT-GAGGAAAAATAGAGCAGCTT
1 TTTTGGAGGGAGAATAGAGCAGCTT
8062226 GGTTGCTGAT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
34 17 0.33
35 26 0.51
36 8 0.16
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.29
Consensus pattern (35 bp):
TTTTGGAGGGAGAATAGAGCAGCTTAGCTACTAAT
Found at i:8062238 original size:34 final size:35
Alignment explanation
Indices: 8062149--8062238 Score: 110
Period size: 34 Copynumber: 2.6 Consensus size: 35
8062139 GGAGGAAAGA
* *
8062149 AGCAGCTTAGCTGCTGATTTTTGGAGGGAGAATAG
1 AGCAGCTTAGCTGCTGATTTTTGGAGGAAAAATAG
* * *
8062184 AGTAGCTTAGCTACTAATTTTT-GAGGAAAAATAG
1 AGCAGCTTAGCTGCTGATTTTTGGAGGAAAAATAG
* *
8062218 AGCAGCTTGGTTGCTGATTTT
1 AGCAGCTTAGCTGCTGATTTT
8062239 GATGTTGATA
Statistics
Matches: 45, Mismatches: 10, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
34 26 0.58
35 19 0.42
ACGTcount: A:0.28, C:0.11, G:0.28, T:0.33
Consensus pattern (35 bp):
AGCAGCTTAGCTGCTGATTTTTGGAGGAAAAATAG
Found at i:8071637 original size:35 final size:35
Alignment explanation
Indices: 8071598--8071685 Score: 95
Period size: 35 Copynumber: 2.5 Consensus size: 35
8071588 CAAATGGTAG
*
8071598 AGGTTACACCTGATCCTACAAAAGGCAAGTTGCGA
1 AGGTTACACCTGATCCTACAAAAGGCAAGTTGCAA
** ** * * *
8071633 AGGTTATGCCTGATTTTGCAAAAGGCATGTTGTAA
1 AGGTTACACCTGATCCTACAAAAGGCAAGTTGCAA
*
8071668 AGGTTACATCTGATCCTA
1 AGGTTACACCTGATCCTA
8071686 TTGAAAAGGC
Statistics
Matches: 39, Mismatches: 14, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (35 bp):
AGGTTACACCTGATCCTACAAAAGGCAAGTTGCAA
Found at i:8072070 original size:80 final size:81
Alignment explanation
Indices: 8071962--8072198 Score: 298
Period size: 80 Copynumber: 2.9 Consensus size: 81
8071952 ATATATATTA
* *
8071962 TATATATAATGATAAATTTGATGTACTATATATACATAATTTTT-TTTATTTACAATAACAAATA
1 TATATATAATGAAAAATTTGATGTACTATATATACATAATTTTTATTGATTTACAATAACAAATA
*
8072026 TTATATGTATATAAAT
66 TTATATGTATACAAAT
* * * *
8072042 TATATATAATGAAAAATTTGATGTACTATATATGCATAATTTTTAATGAATTACAATAGCAAAAA
1 TATATATAATGAAAAATTTGATGTACTATATATACATAATTTTTATTGATTTACAATA--ACAAA
8072107 TTATATATATGTGTATACAAAT
64 -TAT-TATA--TGTATACAAAT
* * * * *
8072129 TATATAT-ATGAAAAATTTGATGTATTATATATAAATAATTTTTATTGGTTTAGAATAACAAAAA
1 TATATATAATGAAAAATTTGATGTACTATATATACATAATTTTTATTGATTTACAATAACAAATA
8072193 TTATAT
66 TTATAT
8072199 AAATAATCAT
Statistics
Matches: 134, Mismatches: 16, Indels: 14
0.82 0.10 0.09
Matches are distributed among these distances:
80 43 0.32
81 10 0.07
82 4 0.03
83 6 0.04
84 7 0.05
85 4 0.03
86 43 0.32
87 17 0.13
ACGTcount: A:0.45, C:0.04, G:0.08, T:0.43
Consensus pattern (81 bp):
TATATATAATGAAAAATTTGATGTACTATATATACATAATTTTTATTGATTTACAATAACAAATA
TTATATGTATACAAAT
Found at i:8072158 original size:86 final size:84
Alignment explanation
Indices: 8071962--8072199 Score: 306
Period size: 86 Copynumber: 2.8 Consensus size: 84
8071952 ATATATATTA
* * *
8071962 TATATATAATGATAAATTTGATGTACTATATATACATAATTTTT-TTTATTTACAATA-ACAAA-
1 TATATATAATGAAAAATTTGATGTACTATATATACATAATTTTTATTGATTTACAATACAAAAAT
*
8072024 TAT-TATATGTATATAAAT
66 TATATATATGTATACAAAT
* * *
8072042 TATATATAATGAAAAATTTGATGTACTATATATGCATAATTTTTAATGAATTACAATAGCAAAAA
1 TATATATAATGAAAAATTTGATGTACTATATATACATAATTTTTATTGATTTACAATA-CAAAAA
8072107 TTATATATATGTGTATACAAAT
65 TTATATATA--TGTATACAAAT
* * * *
8072129 TATATAT-ATGAAAAATTTGATGTATTATATATAAATAATTTTTATTGGTTTAGAATAACAAAAA
1 TATATATAATGAAAAATTTGATGTACTATATATACATAATTTTTATTGATTTACAAT-ACAAAAA
8072193 TTATATA
65 TTATATA
8072200 AATAATCATG
Statistics
Matches: 136, Mismatches: 14, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
80 42 0.31
81 10 0.07
83 4 0.03
84 3 0.02
85 4 0.03
86 55 0.40
87 18 0.13
ACGTcount: A:0.45, C:0.04, G:0.08, T:0.43
Consensus pattern (84 bp):
TATATATAATGAAAAATTTGATGTACTATATATACATAATTTTTATTGATTTACAATACAAAAAT
TATATATATGTATACAAAT
Found at i:8072561 original size:82 final size:82
Alignment explanation
Indices: 8072444--8072596 Score: 252
Period size: 82 Copynumber: 1.9 Consensus size: 82
8072434 TTCACAAAAA
** *
8072444 ATATAATGATAAATTTGATGTACTAAATATACATAATTTTTATTGATTTACAATAACAAAAATTA
1 ATATAATGATAAATACGATGTACTAAATATACATAATTTTTAATGATTTACAATAACAAAAATTA
8072509 TATATAAAATCTATATT
66 TATATAAAATCTATATT
* * *
8072526 ATATAATGATCAATACGATGTACTATATATGCATAATTTTTAATGATTTACAATAACAAAAATTA
1 ATATAATGATAAATACGATGTACTAAATATACATAATTTTTAATGATTTACAATAACAAAAATTA
8072591 TATATA
66 TATATA
8072597 TGTTTATAAA
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
82 65 1.00
ACGTcount: A:0.47, C:0.07, G:0.06, T:0.40
Consensus pattern (82 bp):
ATATAATGATAAATACGATGTACTAAATATACATAATTTTTAATGATTTACAATAACAAAAATTA
TATATAAAATCTATATT
Done.