Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26303135
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.30
Warning! 1968672 characters in sequence are not A, C, G, or T
File 24 of 66
Found at i:8072586 original size:198 final size:197
Alignment explanation
Indices: 8072045--8072710 Score: 662
Period size: 197 Copynumber: 3.4 Consensus size: 197
8072035 TATAAATTAT
* * * *
8072045 ATATAATGAAAAATTTGATGTACTATATATGCATAATTTTTAATGAATTACAATAGCAAAAATTA
1 ATATAATGATAAATTTGATGTACTATATATACATAATTTTTAATGATTTACAATAACAAAAATTA
** * * * ** *
8072110 TATATATGTGTATAC-AAATTATATATATGAAAAATTTGATGTATTATATATAAATAATTTTTAT
66 TATATA--TAAAT-CTATATTATATA-ATGATAAATTTGATGTACTATATATGCATAATTTTTAA
* * * *
8072174 TGGTTTAGAATAAC--AAA--A---AT-TATATAA--ATA-ATCATGATAAATTTGAAACTTAAA
127 TGATTTACAATAACAAAAATTATTTATGTATATAATTATATATAATGATAAATTTGAAACTT--T
* *
8072228 AAAAAAAA
190 TACAAAAA
* * * * * *
8072236 CAAATAATGATAAATTTGATGTACCATATATACATAATTTTTATTAATTTACACTAGCAAAAACT
1 -ATATAATGATAAATTTGATGTACTATATATACATAATTTTTAATGATTTACAATAACAAAAA-T
* * *
8072301 ATATATAAAATATATAATATATATTATATATAATGATAAATTTGATATACTATACATGCATAATT
64 -TATAT---ATATA-AATCTATA-T-TATATAATGATAAATTTGATGTACTATATATGCATAATT
*
8072366 TTTAATGATTAACAATAACAAAAATTATTTATGTATATATATTATATATAATGATAAATTTGAAA
122 TTTAATGATTTACAATAACAAAAATTATTTATGTATATA-ATTATATATAATGATAAATTTGAAA
8072431 CTTTTCACAAAAA
186 CTTTT-ACAAAAA
* *
8072444 ATATAATGATAAATTTGATGTACTAAATATACATAATTTTTATTGATTTACAATAACAAAAATTA
1 ATATAATGATAAATTTGATGTACTATATATACATAATTTTTAATGATTTACAATAACAAAAATTA
* **
8072509 TATATA-AAATCTATATTATATAATGATCAATACGATGTACTATATATGCATAATTTTTAATGAT
66 TATATATAAATCTATATTATATAATGATAAATTTGATGTACTATATATGCATAATTTTTAATGAT
*
8072573 TTACAATAACAAAAATTATATATATGTTTATAAATTATATATAATGATAAATTTGAAACTTTT-C
131 TTACAATAACAAAAATTAT-T-TATGTATAT-AATTATATATAATGATAAATTTGAAACTTTTAC
8072637 AAAAA
193 AAAAA
* * * * * * *
8072642 A-ATAATGATTAATTTGATGTACTATATGTGA-ATAACTTTTAACGATTTATAATAATAAAAAGT
1 ATATAATGATAAATTTGATGTACTATATAT-ACATAATTTTTAATGATTTACAATAACAAAAATT
8072705 ATATAT
65 ATATAT
8072711 TTATATGTAT
Statistics
Matches: 399, Mismatches: 49, Indels: 47
0.81 0.10 0.09
Matches are distributed among these distances:
192 54 0.14
193 1 0.00
194 5 0.01
195 1 0.00
196 4 0.01
197 103 0.26
198 75 0.19
199 5 0.01
200 45 0.11
201 3 0.01
202 3 0.01
204 2 0.01
205 11 0.03
206 2 0.01
207 56 0.14
208 9 0.02
209 20 0.05
ACGTcount: A:0.48, C:0.06, G:0.07, T:0.39
Consensus pattern (197 bp):
ATATAATGATAAATTTGATGTACTATATATACATAATTTTTAATGATTTACAATAACAAAAATTA
TATATATAAATCTATATTATATAATGATAAATTTGATGTACTATATATGCATAATTTTTAATGAT
TTACAATAACAAAAATTATTTATGTATATAATTATATATAATGATAAATTTGAAACTTTTACAAA
AA
Found at i:8073234 original size:15 final size:17
Alignment explanation
Indices: 8073216--8073249 Score: 54
Period size: 15 Copynumber: 2.1 Consensus size: 17
8073206 TATATACCTT
8073216 TTAAATAT-AT-ATAAA
1 TTAAATATAATGATAAA
8073231 TTAAATATAATGATAAA
1 TTAAATATAATGATAAA
8073248 TT
1 TT
8073250 TGAAACATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.47
16 2 0.12
17 7 0.41
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (17 bp):
TTAAATATAATGATAAA
Found at i:8073434 original size:117 final size:118
Alignment explanation
Indices: 8073218--8073489 Score: 352
Period size: 117 Copynumber: 2.3 Consensus size: 118
8073208 TATACCTTTT
*
8073218 AAATATATATAAATTAAATATAATGATAAATTTGAAACATTTCAAAAAAAAAATAATGATAAATT
1 AAATATATATAAATTATATATAATGATAAATTTGAAACATTTCAAAAAAAAAATAATGATAAATT
* *
8073283 TGATGTCCTATATATACATAATTTTTATTGATTTAGAATAACAAAA--ATTATA
66 TGATGTACTATATATACATAATTTTTATTAATTTAGAATAA-AAAATTATTATA
** * *****
8073335 TATGTGTATATAAATTATATATAATGATAAATTTGAAAC-TTTTTTTTAAAAAATAATGATAAAT
1 -AAATATATATAAATTATATATAATGATAAATTTGAAACATTTCAAAAAAAAAATAATGATAAAT
* *
8073399 TTGATGTATTATATATACATAATTTTTATTAATTTATAATAAAAAATTATTTATA
65 TTGATGTACTATATATACATAATTTTTATTAATTTAGAATAAAAAATTA-TTATA
* *
8073454 AAATATATAATATATTATTTATAATGATAAATTTGA
1 AAATATAT-ATAAATTATATATAATGATAAATTTGA
8073490 TGTACTATGT
Statistics
Matches: 132, Mismatches: 18, Indels: 7
0.84 0.11 0.04
Matches are distributed among these distances:
116 4 0.03
117 58 0.44
118 40 0.30
119 30 0.23
ACGTcount: A:0.49, C:0.03, G:0.06, T:0.42
Consensus pattern (118 bp):
AAATATATATAAATTATATATAATGATAAATTTGAAACATTTCAAAAAAAAAATAATGATAAATT
TGATGTACTATATATACATAATTTTTATTAATTTAGAATAAAAAATTATTATA
Found at i:8073444 original size:58 final size:58
Alignment explanation
Indices: 8073264--8073444 Score: 140
Period size: 58 Copynumber: 3.1 Consensus size: 58
8073254 ACATTTCAAA
** * *
8073264 AAAAAAATAATGATAAATTTGATGTCCTATATATACATAATTTTTATTGATTTAGAAT
1 AAAAAAATAATGATAAATTTGATGTATTATATATACATAATTTTTATTAATTTATAAT
* * * * * * **
8073322 AACAAAAAT--T-ATATATGTGTATATAAATTATATATAATGATAAATTTGA--AACTTT-TTTT
1 AA-AAAAATAATGATAAATTTG-ATGT--ATTATATAT-A-CATAATTTTTATTAA-TTTATAAT
*
8073381 TAAAAAATAATGATAAATTTGATGTATTATATATACATAATTTTTATTAATTTATAAT
1 AAAAAAATAATGATAAATTTGATGTATTATATATACATAATTTTTATTAATTTATAAT
8073439 AAAAAA
1 AAAAAA
8073445 TTATTTATAA
Statistics
Matches: 88, Mismatches: 22, Indels: 26
0.65 0.16 0.19
Matches are distributed among these distances:
56 15 0.17
57 8 0.09
58 26 0.30
59 16 0.18
60 8 0.09
61 15 0.17
ACGTcount: A:0.48, C:0.03, G:0.07, T:0.43
Consensus pattern (58 bp):
AAAAAAATAATGATAAATTTGATGTATTATATATACATAATTTTTATTAATTTATAAT
Found at i:8073485 original size:87 final size:88
Alignment explanation
Indices: 8073387--8073578 Score: 230
Period size: 87 Copynumber: 2.2 Consensus size: 88
8073377 TTTTTAAAAA
* * * *
8073387 ATAATGATAAATTTGATGTATTATATATACATAATTTTTATTAATTTATAATAAAAAATTATTTA
1 ATAATGATAAATTTGATGTACTATATATACATAATTTTTAATAATTTACAAT-AAAAA-TATATA
8073452 TAAA-ATATATAATATAT-T-ATT-T
64 TAAATATATAT-ATATATGTAATTAT
* * * *
8073474 ATAATGATAAATTTGATGTACTATGTATGCATAATTTTTAATGATTTACAATAACAATATATATA
1 ATAATGATAAATTTGATGTACTATATATACATAATTTTTAATAATTTACAATAAAAATATATATA
* *
8073539 TATATATATATGTATGTGAATTAT
66 AATATATATATATATGT-AATTAT
8073563 ATAATGATAAATTTGA
1 ATAATGATAAATTTGA
8073579 AACTTTTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
85 13 0.14
86 11 0.12
87 46 0.51
88 3 0.03
89 17 0.19
ACGTcount: A:0.45, C:0.03, G:0.07, T:0.45
Consensus pattern (88 bp):
ATAATGATAAATTTGATGTACTATATATACATAATTTTTAATAATTTACAATAAAAATATATATA
AATATATATATATATGTAATTAT
Found at i:8073666 original size:204 final size:202
Alignment explanation
Indices: 8073270--8073673 Score: 521
Period size: 209 Copynumber: 2.0 Consensus size: 202
8073260 CAAAAAAAAA
* * *
8073270 ATAATGATAAATTTGATGTCCTATATATACATAATTTTTATTGATTTAGAATAACAAAAATTATA
1 ATAATGATAAATTTGATGTACTATATATACATAATTTTTAATGATTTACAATAACAAAAATTATA
* ****
8073335 TATGTGTATATAAATTATATATAATGATAAATTTGAAACTTTTTTTTAAAAAATAATGATAAATT
66 TATATGTATATAAATTATATATAATGATAAATTTGAAACTTTTCAAAAAAAAATAATGATAAATT
* * *
8073400 TGATGTATTATATATACATAATTTTTATTAATTTATAATAAAAAATTATTTATAAAATATATAAT
131 TGATGTACTATATATACATAATTTTTATTAATTTACAATAAAAAA-TATTTATAATATATAT-AT
8073465 ATATTATTT
194 ATATTATTT
* *
8073474 ATAATGATAAATTTGATGTACTATGTATGCATAATTTTTAATGATTTACAATAACAATATATATA
1 ATAATGATAAATTTGATGTACTATATATACATAATTTTTAATGATTTACAATAAC-A-A-A-A-A
* *
8073539 TATATATATATGTATGTGAA-T-TATATAATGATAAATTTGAAACTTTTCAAAATAAAAATAATG
61 T-TATATATATGTATATAAATTATATATAATGATAAATTTGAAACTTTTCAAAA-AAAAATAATG
* * *
8073602 ATAAATTTGATGTACTATATCTCCATAATTTTTATTGATTTACAATAACAAAA-A-TTAT-ATAT
124 ATAAATTTGATGTACTATATATACATAATTTTTATTAATTTACAATAA-AAAATATTTATAATAT
8073664 ATATATATAT
188 ATATATATAT
8073674 GTGAGTGTGT
Statistics
Matches: 174, Mismatches: 18, Indels: 15
0.84 0.09 0.07
Matches are distributed among these distances:
204 50 0.29
205 7 0.04
206 8 0.05
207 5 0.03
208 29 0.17
209 56 0.32
210 19 0.11
ACGTcount: A:0.45, C:0.04, G:0.07, T:0.44
Consensus pattern (202 bp):
ATAATGATAAATTTGATGTACTATATATACATAATTTTTAATGATTTACAATAACAAAAATTATA
TATATGTATATAAATTATATATAATGATAAATTTGAAACTTTTCAAAAAAAAATAATGATAAATT
TGATGTACTATATATACATAATTTTTATTAATTTACAATAAAAAATATTTATAATATATATATAT
ATTATTT
Found at i:8082328 original size:20 final size:20
Alignment explanation
Indices: 8082302--8082347 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
8082292 AATCTTACCT
* *
8082302 TTTTTCACTTATTTCCTTGAA
1 TTTTACACTT-TTCCCTTGAA
8082323 TTTTCACACTTTTCCCTTGAA
1 TTTT-ACACTTTTCCCTTGAA
8082344 TTTT
1 TTTT
8082348 TCCACCTAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.17, C:0.22, G:0.04, T:0.57
Consensus pattern (20 bp):
TTTTACACTTTTCCCTTGAA
Found at i:8082349 original size:22 final size:22
Alignment explanation
Indices: 8082307--8082347 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
8082297 TACCTTTTTT
*
8082307 CACTTATTTCCTTGAATTTTCA
1 CACTTATTCCCTTGAATTTTCA
8082329 CACTT-TTCCCTTGAATTTT
1 CACTTATTCCCTTGAATTTT
8082348 TCCACCTAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.20, C:0.24, G:0.05, T:0.51
Consensus pattern (22 bp):
CACTTATTCCCTTGAATTTTCA
Found at i:8086878 original size:5 final size:5
Alignment explanation
Indices: 8086870--8086895 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
8086860 GTATCAAACC
8086870 TAACT TAACT TAACT TAACT TAACT T
1 TAACT TAACT TAACT TAACT TAACT T
8086896 GGGCCACACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.19, G:0.00, T:0.42
Consensus pattern (5 bp):
TAACT
Found at i:8089242 original size:20 final size:20
Alignment explanation
Indices: 8089216--8089261 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
8089206 ATTCTTACAT
* *
8089216 TTTTTCACTTATTTCCTTGAA
1 TTTTACACTT-TTCCCTTGAA
8089237 TTTTCACACTTTTCCCTTGAA
1 TTTT-ACACTTTTCCCTTGAA
8089258 TTTT
1 TTTT
8089262 TCCACCTAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.17, C:0.22, G:0.04, T:0.57
Consensus pattern (20 bp):
TTTTACACTTTTCCCTTGAA
Found at i:8089263 original size:22 final size:22
Alignment explanation
Indices: 8089221--8089261 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
8089211 TACATTTTTT
*
8089221 CACTTATTTCCTTGAATTTTCA
1 CACTTATTCCCTTGAATTTTCA
8089243 CACTT-TTCCCTTGAATTTT
1 CACTTATTCCCTTGAATTTT
8089262 TCCACCTAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.20, C:0.24, G:0.05, T:0.51
Consensus pattern (22 bp):
CACTTATTCCCTTGAATTTTCA
Found at i:8093573 original size:37 final size:37
Alignment explanation
Indices: 8093523--8093604 Score: 146
Period size: 37 Copynumber: 2.2 Consensus size: 37
8093513 CATATACATA
8093523 CATCATCATCATGTGTGCACTCCCTACTCGCACACTC
1 CATCATCATCATGTGTGCACTCCCTACTCGCACACTC
*
8093560 CATCATCATCATGTGTGCACTCCCTACTCGCACACTT
1 CATCATCATCATGTGTGCACTCCCTACTCGCACACTC
*
8093597 CAACATCA
1 CATCATCA
8093605 CCAACCAACA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.24, C:0.39, G:0.10, T:0.27
Consensus pattern (37 bp):
CATCATCATCATGTGTGCACTCCCTACTCGCACACTC
Found at i:8096320 original size:52 final size:52
Alignment explanation
Indices: 8096263--8096419 Score: 269
Period size: 52 Copynumber: 3.0 Consensus size: 52
8096253 GCACATGACG
* *
8096263 GTGATAATGGTGTGCTGTGTAAGTGCACACACTGATGATATATGCCATGTGC
1 GTGATAGTGGTGTGCTGTGTGAGTGCACACACTGATGATATATGCCATGTGC
*
8096315 GTGATAGTGGTGTGCTGTGTGAGTGCACACATTGATGATATATGCCATGTGC
1 GTGATAGTGGTGTGCTGTGTGAGTGCACACACTGATGATATATGCCATGTGC
* *
8096367 GTAATAGTGGTGCGCTGTGTGAGTGCACACACTGATGATATATGCCATGTGC
1 GTGATAGTGGTGTGCTGTGTGAGTGCACACACTGATGATATATGCCATGTGC
8096419 G
1 G
8096420 AGGTGGGAGT
Statistics
Matches: 99, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 99 1.00
ACGTcount: A:0.23, C:0.15, G:0.31, T:0.31
Consensus pattern (52 bp):
GTGATAGTGGTGTGCTGTGTGAGTGCACACACTGATGATATATGCCATGTGC
Found at i:8096430 original size:39 final size:37
Alignment explanation
Indices: 8096376--8096505 Score: 110
Period size: 36 Copynumber: 3.5 Consensus size: 37
8096366 CGTAATAGTG
* *
8096376 GTGCGCTGTGTGAGTGCACACACTGATGATATATGCCAT
1 GTGCGGTGTGGGAGTGCACACA-TGATGATAT-TGCCAT
*
8096415 GTGCGAG-GTGGGAGTG--CACATGATGATATTGCCCT
1 GTGCG-GTGTGGGAGTGCACACATGATGATATTGCCAT
* *
8096450 GTGCGGTGTGGAAGTGCACA-A-GATGAT-TCTAGCTAT
1 GTGCGGTGTGGGAGTGCACACATGATGATAT-T-GCCAT
* *
8096486 GTGCAGTGTGGAAGTGCACA
1 GTGCGGTGTGGGAGTGCACA
8096506 TGAACTGTTG
Statistics
Matches: 78, Mismatches: 7, Indels: 15
0.78 0.07 0.15
Matches are distributed among these distances:
34 2 0.03
35 25 0.32
36 32 0.41
37 6 0.08
39 13 0.17
ACGTcount: A:0.23, C:0.17, G:0.34, T:0.26
Consensus pattern (37 bp):
GTGCGGTGTGGGAGTGCACACATGATGATATTGCCAT
Found at i:8096466 original size:35 final size:36
Alignment explanation
Indices: 8096394--8096508 Score: 128
Period size: 36 Copynumber: 3.2 Consensus size: 36
8096384 TGTGAGTGCA
*
8096394 CACACTGATGATATATGCCATGTGCGAG-GTGGGAGTG
1 CACA-TGATGATATATGCCATGTGCG-GTGTGGAAGTG
*
8096431 CACATGATGATAT-TGCCCTGTGCGGTGTGGAAGTG
1 CACATGATGATATATGCCATGTGCGGTGTGGAAGTG
* * * *
8096466 CACAAGATGAT-TCTAGCTATGTGCAGTGTGGAAGTG
1 CACATGATGATATAT-GCCATGTGCGGTGTGGAAGTG
8096502 CACATGA
1 CACATGA
8096509 ACTGTTGAGA
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
34 2 0.03
35 29 0.43
36 33 0.49
37 4 0.06
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.26
Consensus pattern (36 bp):
CACATGATGATATATGCCATGTGCGGTGTGGAAGTG
Found at i:8099285 original size:33 final size:32
Alignment explanation
Indices: 8099208--8099286 Score: 79
Period size: 33 Copynumber: 2.3 Consensus size: 32
8099198 TGTTCTTTTG
**
8099208 CTTTTCTTTTGCTCTTCCTCACAACCGACTTCT
1 CTTTTCTTTT-CTCTTCCTCACAACCGACTTAA
*
8099241 CTCTTTCCTTTT-TCTTCTTCACTTAACCGACTTAA
1 CT-TTT-CTTTTCTCTTCCTCAC--AACCGACTTAA
8099276 CTTTTCTTTTC
1 CTTTTCTTTTC
8099287 ATTTCTTTCT
Statistics
Matches: 38, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
33 16 0.42
34 6 0.16
35 16 0.42
ACGTcount: A:0.13, C:0.33, G:0.04, T:0.51
Consensus pattern (32 bp):
CTTTTCTTTTCTCTTCCTCACAACCGACTTAA
Found at i:8101301 original size:55 final size:55
Alignment explanation
Indices: 8101222--8101402 Score: 238
Period size: 55 Copynumber: 3.3 Consensus size: 55
8101212 TGGGCTGTGA
* * * *
8101222 CACATAGCTAGAATCATCATCCACCGGTCATCAGCTCATGCGCAGTCCCACA-CG
1 CACATAGCTGGAATCATCACCCACCGGTCATCAGCTCATGTGCACTCCCACACCG
* * * * *
8101276 ACATATAACTGGAATCATCACCCACCGATCATCAACTCATGTGCACTCTCACACCG
1 -CACATAGCTGGAATCATCACCCACCGGTCATCAGCTCATGTGCACTCCCACACCG
* * *
8101332 CACATAGCTAGATTTATCACCCACCGGTCATCAGCTCATGTGCACTCCCACACCG
1 CACATAGCTGGAATCATCACCCACCGGTCATCAGCTCATGTGCACTCCCACACCG
8101387 CACATAGCTGGAATCA
1 CACATAGCTGGAATCA
8101403 CCCGTCATCA
Statistics
Matches: 105, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
55 103 0.98
56 2 0.02
ACGTcount: A:0.29, C:0.36, G:0.14, T:0.20
Consensus pattern (55 bp):
CACATAGCTGGAATCATCACCCACCGGTCATCAGCTCATGTGCACTCCCACACCG
Found at i:8101424 original size:49 final size:53
Alignment explanation
Indices: 8101222--8101439 Score: 187
Period size: 55 Copynumber: 4.1 Consensus size: 53
8101212 TGGGCTGTGA
* * * * *
8101222 CACATAGCTAGAATCATCATCCACCGGTCATCAGCTCATGCGCAGTCCCACA-CG
1 CACATAGCTAG-AT-ATCACCCACCGATCATCAGATCATGTGCACTCCCACACCG
* * * *
8101276 ACATATAACTGGAATCATCACCCACCGATCATCA-ACTCATGTGCACTCTCACACCG
1 -CACATAGCTAG-AT-ATCACCCACCGATCATCAGA-TCATGTGCACTCCCACACCG
* *
8101332 CACATAGCTAGATTTATCACCCACCGGTCATCAGCTCATGTGCACTCCCACACCG
1 CACATAGCTAGA--TATCACCCACCGATCATCAGATCATGTGCACTCCCACACCG
* ** *
8101387 CACATAGCTGGA-ATCACCCGTC-ATCATC-GAT-ATGTGCACTCCCACACTG
1 CACATAGCTAGATATCACCCACCGATCATCAGATCATGTGCACTCCCACACCG
8101436 CACA
1 CACA
8101440 CGCGCAGTTA
Statistics
Matches: 137, Mismatches: 21, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
49 21 0.15
50 2 0.01
51 5 0.04
52 8 0.06
54 1 0.01
55 97 0.71
56 3 0.02
ACGTcount: A:0.28, C:0.37, G:0.14, T:0.21
Consensus pattern (53 bp):
CACATAGCTAGATATCACCCACCGATCATCAGATCATGTGCACTCCCACACCG
Found at i:8130165 original size:16 final size:16
Alignment explanation
Indices: 8130141--8130171 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8130131 CTATCTCTCA
8130141 TTCAATTTTTTTTATG
1 TTCAATTTTTTTTATG
*
8130157 TTCAGTTTTTTTTAT
1 TTCAATTTTTTTTAT
8130172 TTTCTTTTGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.06, G:0.06, T:0.71
Consensus pattern (16 bp):
TTCAATTTTTTTTATG
Found at i:8130379 original size:21 final size:19
Alignment explanation
Indices: 8130343--8130383 Score: 55
Period size: 21 Copynumber: 2.1 Consensus size: 19
8130333 ATATGTTGAG
8130343 TAGTTAATTTAAGTTATTT
1 TAGTTAATTTAAGTTATTT
*
8130362 TAGTTAAATTTTATGTTATTT
1 TAGTT-AA-TTTAAGTTATTT
8130383 T
1 T
8130384 GTTTTAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 5 0.26
20 2 0.11
21 12 0.63
ACGTcount: A:0.29, C:0.00, G:0.10, T:0.61
Consensus pattern (19 bp):
TAGTTAATTTAAGTTATTT
Found at i:8132828 original size:19 final size:20
Alignment explanation
Indices: 8132804--8132843 Score: 73
Period size: 19 Copynumber: 2.0 Consensus size: 20
8132794 CCATTTGACT
8132804 TATTGGAGTATGATTT-AAG
1 TATTGGAGTATGATTTGAAG
8132823 TATTGGAGTATGATTTGAAG
1 TATTGGAGTATGATTTGAAG
8132843 T
1 T
8132844 TTAAAAGTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.30, C:0.00, G:0.28, T:0.42
Consensus pattern (20 bp):
TATTGGAGTATGATTTGAAG
Found at i:8143630 original size:60 final size:59
Alignment explanation
Indices: 8143512--8143937 Score: 467
Period size: 59 Copynumber: 7.3 Consensus size: 59
8143502 TAAACACCTT
* * *
8143512 GCTCGACCTATCTCAAAATAAGTTCGATTTAAAAATTGAAATTCCTTGACTAGATCTAG
1 GCTCGACCTATCTCAAAACAAGTTCGATTTAAAAATTGAAATTCCTAGACTTGATCTAG
* * * * *
8143571 GCTCGAGCTATTTGAAAACAAGTTTGATTTAAAAAATTGAAATTCTTAGACTTGATCTAG
1 GCTCGACCTATCTCAAAACAAGTTCGATTT-AAAAATTGAAATTCCTAGACTTGATCTAG
* * *
8143631 ACTCGACCTATCTCAAAACAAGCTCGA--T-----TTGAAATTCCTAAACTTGATCTAG
1 GCTCGACCTATCTCAAAACAAGTTCGATTTAAAAATTGAAATTCCTAGACTTGATCTAG
** * * *
8143683 G-TTTACCTATCTCAAAACAGGTTTGATTTAAAAAATTGAAACTT-TTAGACTTGATCTAG
1 GCTCGACCTATCTCAAAACAAGTTCGATTT-AAAAATTGAAA-TTCCTAGACTTGATCTAG
* ** * * *
8143742 GCTCGACCTATCTTAAAACAAGTTCGATTTAAAAAAATTGAAACCCCCAAACTTGATCTAA
1 GCTCGACCTATCTCAAAACAAGTTCGATTT--AAAAATTGAAATTCCTAGACTTGATCTAG
* *
8143803 GCTCGACCTATCTCAAAACAAGTTCGATTTAAAAA-TGAAATTCCTAGTCTTGATCCAG
1 GCTCGACCTATCTCAAAACAAGTTCGATTTAAAAATTGAAATTCCTAGACTTGATCTAG
* * *
8143861 GTTCGACCTATCTCAAAACAGGTTCGATTTAAAAATTGAAATTCCTAAACTTGATCTAG
1 GCTCGACCTATCTCAAAACAAGTTCGATTTAAAAATTGAAATTCCTAGACTTGATCTAG
* **
8143920 GCTTGATTTATCTCAAAA
1 GCTCGACCTATCTCAAAA
8143938 TAGGTTCAAT
Statistics
Matches: 301, Mismatches: 52, Indels: 28
0.79 0.14 0.07
Matches are distributed among these distances:
51 20 0.07
52 22 0.07
53 1 0.00
58 50 0.17
59 84 0.28
60 72 0.24
61 52 0.17
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.32
Consensus pattern (59 bp):
GCTCGACCTATCTCAAAACAAGTTCGATTTAAAAATTGAAATTCCTAGACTTGATCTAG
Found at i:8143747 original size:111 final size:114
Alignment explanation
Indices: 8143512--8143897 Score: 397
Period size: 111 Copynumber: 3.3 Consensus size: 114
8143502 TAAACACCTT
* *** * *
8143512 GCTCGACCTATCTCAAAATAAGTTCGATTTAAAAATTGAAATTCCTTGACTAGATCTAGGCTCGA
1 GCTCGACCTATCTCAAAACAAGTTCGATTTAAAAATT---A--CCCAAACTTGATCTAAGCTCGA
* * *
8143577 GCTATTTGAAAACAAGTTTGATTTAAAAAATTGAAATTCTTAGACTTGATCTAG
61 CCTATCTCAAAACAAGTTTGATTTAAAAAATTGAAATTCTTAGACTTGATCTAG
* * * * * **
8143631 ACTCGACCTATCTCAAAACAAGCTCGATTT-GAAATT-CCTAAACTTGATCT-AGGTTTACCTAT
1 GCTCGACCTATCTCAAAACAAGTTCGATTTAAAAATTACCCAAACTTGATCTAAGCTCGACCTAT
*
8143693 CTCAAAACAGGTTTGATTTAAAAAATTGAAACTT-TTAGACTTGATCTAG
66 CTCAAAACAAGTTTGATTTAAAAAATTGAAA-TTCTTAGACTTGATCTAG
*
8143742 GCTCGACCTATCTTAAAACAAGTTCGATTTAAAAAAATTGAAACCCCCAAACTTGATCTAAGCTC
1 GCTCGACCTATCTCAAAACAAGTTCGATTT--AAAAATT---A--CCCAAACTTGATCTAAGCTC
* * * *
8143807 GACCTATCTCAAAACAAGTTCGATTT-AAAAA-TGAAATTCCTAGTCTTGATCCAG
59 GACCTATCTCAAAACAAGTTTGATTTAAAAAATTGAAATTCTTAGACTTGATCTAG
* *
8143861 GTTCGACCTATCTCAAAACAGGTTCGATTTAAAAATT
1 GCTCGACCTATCTCAAAACAAGTTCGATTTAAAAATT
8143898 GAAATTCCTA
Statistics
Matches: 224, Mismatches: 31, Indels: 26
0.80 0.11 0.09
Matches are distributed among these distances:
111 77 0.34
112 13 0.06
114 5 0.02
117 7 0.03
118 7 0.03
119 71 0.32
120 18 0.08
121 26 0.12
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.32
Consensus pattern (114 bp):
GCTCGACCTATCTCAAAACAAGTTCGATTTAAAAATTACCCAAACTTGATCTAAGCTCGACCTAT
CTCAAAACAAGTTTGATTTAAAAAATTGAAATTCTTAGACTTGATCTAG
Found at i:8144494 original size:22 final size:22
Alignment explanation
Indices: 8144466--8144516 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
8144456 GATTACCTAA
8144466 AGGTTTTGAAAAGTGCACCCAG
1 AGGTTTTGAAAAGTGCACCCAG
* ** *
8144488 AGGTTTTGGATTGTGTACCCAG
1 AGGTTTTGAAAAGTGCACCCAG
8144510 AGGTTTT
1 AGGTTTT
8144517 ATAAGCAATC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.24, C:0.14, G:0.29, T:0.33
Consensus pattern (22 bp):
AGGTTTTGAAAAGTGCACCCAG
Found at i:8144779 original size:21 final size:21
Alignment explanation
Indices: 8144727--8144784 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 21
8144717 TAATGTTAAT
*
8144727 TACTTGGAGGTTTTGAGAATA
1 TACTTGGAGGTTTTAAGAATA
**** *
8144748 TACCCAAAGGTTTTAAGAATG
1 TACTTGGAGGTTTTAAGAATA
8144769 TACTTGGAGGTTTTAA
1 TACTTGGAGGTTTTAA
8144785 AAGAAAAAGT
Statistics
Matches: 27, Mismatches: 10, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.31, C:0.09, G:0.24, T:0.36
Consensus pattern (21 bp):
TACTTGGAGGTTTTAAGAATA
Found at i:8144829 original size:122 final size:121
Alignment explanation
Indices: 8144636--8144883 Score: 338
Period size: 122 Copynumber: 2.0 Consensus size: 121
8144626 TGCACCTAGA
* * *
8144636 GTTTTAGGAATGTACTCGGAGGTTTAAAAGAAAAGGTTGCTCCTCATCTCTAAATGAGGCTACGT
1 GTTTTAAGAATGTACTCGGAGGTTTAAAAGAAAAAGTTGCTCCCCATCTCTAAATGAGGCTACGT
** * *
8144701 AACTTTAAA-AACATATT-AATGTTAATTACTTGGAGGTTTTGAGAATATACCCAAAG
66 AACTTTAAAGAA-ATATTGAA-ACTAATTACTTGGAAGTTTTGAAAATATACCCAAAG
* *
8144757 GTTTTAAGAATGTACTTGGAGGTTTTAAAAGAAAAAGTTGCTCCCCATCTCTAAATGAGGTTACG
1 GTTTTAAGAATGTACTCGGAGG-TTTAAAAGAAAAAGTTGCTCCCCATCTCTAAATGAGGCTACG
* * * *
8144822 TAACTTTAAAGAAATCTTGAAACTAATTGCTTGGAAGTTTTGAAAATGTACCCGAAG
65 TAACTTTAAAGAAATATTGAAACTAATTACTTGGAAGTTTTGAAAATATACCCAAAG
8144879 GTTTT
1 GTTTT
8144884 GGAAATGTAC
Statistics
Matches: 111, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
121 20 0.18
122 87 0.78
123 4 0.04
ACGTcount: A:0.34, C:0.13, G:0.20, T:0.33
Consensus pattern (121 bp):
GTTTTAAGAATGTACTCGGAGGTTTAAAAGAAAAAGTTGCTCCCCATCTCTAAATGAGGCTACGT
AACTTTAAAGAAATATTGAAACTAATTACTTGGAAGTTTTGAAAATATACCCAAAG
Found at i:8144901 original size:21 final size:21
Alignment explanation
Indices: 8144858--8144907 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
8144848 TTGCTTGGAA
* *
8144858 GTTTTGAAAATGTACCCGAAG
1 GTTTTGGAAATGTACCAGAAG
8144879 GTTTTGGAAATGTACCTAG-AG
1 GTTTTGGAAATGTACC-AGAAG
8144900 GTTTTGGA
1 GTTTTGGA
8144908 GACGTACTCG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 25 0.96
22 1 0.04
ACGTcount: A:0.28, C:0.10, G:0.28, T:0.34
Consensus pattern (21 bp):
GTTTTGGAAATGTACCAGAAG
Found at i:8154709 original size:21 final size:21
Alignment explanation
Indices: 8154684--8154737 Score: 90
Period size: 21 Copynumber: 2.6 Consensus size: 21
8154674 GGTAGCAAGT
8154684 TTCTCGCTGCAGCAAAGTTCA
1 TTCTCGCTGCAGCAAAGTTCA
*
8154705 TTCTCGCTGCAGCGAAGTTCA
1 TTCTCGCTGCAGCAAAGTTCA
*
8154726 TTCTCGTTGCAG
1 TTCTCGCTGCAG
8154738 TGAGATTTAG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.19, C:0.28, G:0.22, T:0.31
Consensus pattern (21 bp):
TTCTCGCTGCAGCAAAGTTCA
Found at i:8155338 original size:40 final size:39
Alignment explanation
Indices: 8155278--8155383 Score: 151
Period size: 38 Copynumber: 2.7 Consensus size: 39
8155268 CTCACCCAAC
*
8155278 TCATGTGCATCCCCCCACATCGTGCACATAGCCAGAGTCA
1 TCATGTGCATCCCCCCACATCGTGCACA-AGCCAGAGCCA
* * *
8155318 TCATGTGCATCCCCCTACATCGTGCAC-AGTCAGTGCCA
1 TCATGTGCATCCCCCCACATCGTGCACAAGCCAGAGCCA
*
8155356 TCATGTACATCCCCCCACATCGTGCACA
1 TCATGTGCATCCCCCCACATCGTGCACA
8155384 CAGGCACTAT
Statistics
Matches: 59, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
38 33 0.56
40 26 0.44
ACGTcount: A:0.24, C:0.39, G:0.16, T:0.22
Consensus pattern (39 bp):
TCATGTGCATCCCCCCACATCGTGCACAAGCCAGAGCCA
Found at i:8155398 original size:40 final size:39
Alignment explanation
Indices: 8155278--8155399 Score: 131
Period size: 40 Copynumber: 3.1 Consensus size: 39
8155268 CTCACCCAAC
* *
8155278 TCATGTGCATCCCCCCACATCGTGCACATAGCCAGAGTCA
1 TCATGTGCATCCCCCCACATCGTGCACACAGCCATA-TCA
* * **
8155318 TCATGTGCATCCCCCTACATCGTG--CACAGTCAGTGCCA
1 TCATGTGCATCCCCCCACATCGTGCACACAGCCA-TATCA
* *
8155356 TCATGTACATCCCCCCACATCGTGCACACAGGCACTATCA
1 TCATGTGCATCCCCCCACATCGTGCACACAGCCA-TATCA
8155396 TCAT
1 TCAT
8155400 CCATCTCCTT
Statistics
Matches: 67, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
38 30 0.45
40 37 0.55
ACGTcount: A:0.25, C:0.38, G:0.16, T:0.22
Consensus pattern (39 bp):
TCATGTGCATCCCCCCACATCGTGCACACAGCCATATCA
Found at i:8156083 original size:2 final size:2
Alignment explanation
Indices: 8156076--8156108 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
8156066 TCATGGAAAA
8156076 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
8156109 TTAAATTTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:8159296 original size:28 final size:29
Alignment explanation
Indices: 8159255--8159314 Score: 68
Period size: 30 Copynumber: 2.1 Consensus size: 29
8159245 GTCTATGGGC
*
8159255 AATTTTTCAATTTT-TGGGGCAAAAATGT
1 AATTTTTCAATTTTAGGGGGCAAAAATGT
* * *
8159283 AATTTTTGACTTTTACGGGGGCAAAAGTGT
1 AATTTTTCAATTTTA-GGGGGCAAAAATGT
8159313 AA
1 AA
8159315 ATTTCAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 12 0.46
30 14 0.54
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.38
Consensus pattern (29 bp):
AATTTTTCAATTTTAGGGGGCAAAAATGT
Found at i:8165744 original size:17 final size:17
Alignment explanation
Indices: 8165718--8165763 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 17
8165708 ATTTATAAAA
8165718 AATTCAATTTATTTTAT
1 AATTCAATTTATTTTAT
*
8165735 AATTCCATTTATTTTAT
1 AATTCAATTTATTTTAT
8165752 AAATTCATATTT
1 -AATTCA-ATTT
8165764 TTCTCATAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 16 0.64
18 5 0.20
19 4 0.16
ACGTcount: A:0.35, C:0.09, G:0.00, T:0.57
Consensus pattern (17 bp):
AATTCAATTTATTTTAT
Found at i:8169733 original size:168 final size:167
Alignment explanation
Indices: 8169455--8169789 Score: 598
Period size: 168 Copynumber: 2.0 Consensus size: 167
8169445 TGTCCCGATA
*
8169455 GGCACTCATCCCCCGAATACCATATCGAGACCTCACAAGGCTTTTGTATAAGTTTCTTATCTCCC
1 GGCACTCATCCCCCGAATACCATATCGAGACCTCACAAGGCTTTCGTATAAGTTTCTTATCTCCC
8169520 ATGTGGTTAATCGTTGCCAAATGTCGTATTTTAGAGGCTTTTAATCTTTTTTTTTATTTAAAACT
66 ATGTGGTTAATCGTTGCCAAATGTCGTATTTTAGAGGCTTTTAATCTTTTTTTTTATTTAAAACT
8169585 GTGAAAAAATAAATTTCACTTCACAAAGGCATTTTGG
131 GTGAAAAAATAAATTTCACTTCACAAAGGCATTTTGG
** **
8169622 NGGCACTCATCCCCCGAATACCATATCGAGACCTCGTAAGGCTTTCGTATCGGTTTCTTATCTCC
1 -GGCACTCATCCCCCGAATACCATATCGAGACCTCACAAGGCTTTCGTATAAGTTTCTTATCTCC
8169687 CATGTGGTTAATCGTTGCCAAATGTCGTATTTTAGAGGCTTTTAATCTTTTTTTTTATTTAAAAC
65 CATGTGGTTAATCGTTGCCAAATGTCGTATTTTAGAGGCTTTTAATCTTTTTTTTTATTTAAAAC
**
8169752 TGTGAAAAAATAAATTTCACTTCACAGGGGCATTTTGG
130 TGTGAAAAAATAAATTTCACTTCACAAAGGCATTTTGG
8169790 TTATTTTTCG
Statistics
Matches: 160, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
168 160 1.00
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.37
Consensus pattern (167 bp):
GGCACTCATCCCCCGAATACCATATCGAGACCTCACAAGGCTTTCGTATAAGTTTCTTATCTCCC
ATGTGGTTAATCGTTGCCAAATGTCGTATTTTAGAGGCTTTTAATCTTTTTTTTTATTTAAAACT
GTGAAAAAATAAATTTCACTTCACAAAGGCATTTTGG
Found at i:8173148 original size:2 final size:2
Alignment explanation
Indices: 8173131--8173171 Score: 64
Period size: 2 Copynumber: 20.5 Consensus size: 2
8173121 ACCAATGTAC
* *
8173131 TA TA CA TA TA TC TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8173172 CAACATTATA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:8179396 original size:2 final size:2
Alignment explanation
Indices: 8179389--8179418 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
8179379 AATACACAAC
*
8179389 AT AT AT AT AT AT AT AT AT GT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8179419 CAACATAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8183598 original size:20 final size:19
Alignment explanation
Indices: 8183573--8183621 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
8183563 CAATTTCTTC
8183573 CCTATTTTTTATTAACCTAA
1 CCTATTTTTTATTAA-CTAA
* *
8183593 CCTATTTTCTTTTTGACTAA
1 CCTATTTT-TTATTAACTAA
8183613 -CTATTTTTT
1 CCTATTTTTT
8183622 TATCCTTTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
18 2 0.08
19 7 0.27
20 12 0.46
21 5 0.19
ACGTcount: A:0.22, C:0.18, G:0.02, T:0.57
Consensus pattern (19 bp):
CCTATTTTTTATTAACTAA
Found at i:8183791 original size:201 final size:200
Alignment explanation
Indices: 8183562--8183963 Score: 741
Period size: 201 Copynumber: 2.0 Consensus size: 200
8183552 TTTTTATAAA
*
8183562 TCAATTTCTTCCCTATTTTTTATTAACCTAACCTATTTTCTTTTTGACTAACTATTTTTTTATCC
1 TCAATGTCTTCCCTATTTTTTATTAACCTAACCTATTTTCTTTTTGACTAACTATTTTTTTATCC
8183627 TTTCTCATAAATCTATTTTATATTTGCCTTTTATATTTTAGTGGTATTGACTATTGTGAATTTAC
66 TTTCTCATAAATCTATTTTATATTTGCCTTTTATATTTTAGTGGTATTGACTATTGTGAATTTAC
*
8183692 CATCATTGAAAGTTTTATTATTTTTTGCTATTTATTTATTATTTTCATTATTTCTTTACTTCTTT
131 CATCATTGAAAGTTTTATTATTTTTTGCTATTTATTTATTATCTTCATTATTTCTTTACTTCTTT
8183757 AGTTT
196 AGTTT
* * *
8183762 TNCAATGTCTTTCCTATTTTTTGTTAACCTAGCCTATTTTCTTTTTGACTAACTATTTTTTTATC
1 T-CAATGTCTTCCCTATTTTTTATTAACCTAACCTATTTTCTTTTTGACTAACTATTTTTTTATC
8183827 CTTTCTCATAAATCTATTTTATATTTGCCTTTTATATTTTAGTGGTATTGACTATTGTGAATTTA
65 CTTTCTCATAAATCTATTTTATATTTGCCTTTTATATTTTAGTGGTATTGACTATTGTGAATTTA
8183892 CCATCATTGAAAGTTTTATTATTTTTTGCTATTTATTTATTATCTTCATTATTTCTTTACTTCTT
130 CCATCATTGAAAGTTTTATTATTTTTTGCTATTTATTTATTATCTTCATTATTTCTTTACTTCTT
*
8183957 TTGTTT
195 TAGTTT
8183963 T
1 T
8183964 TATATTTCAC
Statistics
Matches: 195, Mismatches: 6, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
200 1 0.01
201 194 0.99
ACGTcount: A:0.22, C:0.14, G:0.07, T:0.57
Consensus pattern (200 bp):
TCAATGTCTTCCCTATTTTTTATTAACCTAACCTATTTTCTTTTTGACTAACTATTTTTTTATCC
TTTCTCATAAATCTATTTTATATTTGCCTTTTATATTTTAGTGGTATTGACTATTGTGAATTTAC
CATCATTGAAAGTTTTATTATTTTTTGCTATTTATTTATTATCTTCATTATTTCTTTACTTCTTT
AGTTT
Found at i:8184701 original size:19 final size:18
Alignment explanation
Indices: 8184666--8184700 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
8184656 GGTATAAAAG
8184666 CCTTCTTTTCTTCTTTTC
1 CCTTCTTTTCTTCTTTTC
8184684 CCTTCATTTTC-TCTTTT
1 CCTTC-TTTTCTTCTTTT
8184701 TGTTTTCTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.03, C:0.31, G:0.00, T:0.66
Consensus pattern (18 bp):
CCTTCTTTTCTTCTTTTC
Found at i:8185081 original size:28 final size:28
Alignment explanation
Indices: 8185050--8185116 Score: 107
Period size: 28 Copynumber: 2.4 Consensus size: 28
8185040 TTTTTTTTTT
* *
8185050 AAATTGGTTGCCTAAGGCTTTTGTGGTA
1 AAATTGGCTGCCTAAGGCTTTTGTGATA
*
8185078 AAATTGGCTGCCTAAGGCTTTTGTTATA
1 AAATTGGCTGCCTAAGGCTTTTGTGATA
8185106 AAATTGGCTGC
1 AAATTGGCTGC
8185117 TAGGTTTTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.24, C:0.13, G:0.25, T:0.37
Consensus pattern (28 bp):
AAATTGGCTGCCTAAGGCTTTTGTGATA
Found at i:8188928 original size:15 final size:15
Alignment explanation
Indices: 8188890--8188929 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
8188880 TGCAAGAAAC
* *
8188890 AAAAAAAATATAATA
1 AAAAAAAAAATAAAA
*
8188905 AAATAAAAAATAAAA
1 AAAAAAAAAATAAAA
8188920 AAAAAAAAAA
1 AAAAAAAAAA
8188930 AGGAAAGAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (15 bp):
AAAAAAAAAATAAAA
Found at i:8193296 original size:15 final size:15
Alignment explanation
Indices: 8193273--8193302 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8193263 TGCGTGTTTG
*
8193273 GTTGTAATTTTTGGT
1 GTTGCAATTTTTGGT
8193288 GTTGCAATTTTTGGT
1 GTTGCAATTTTTGGT
8193303 TTTTATTCCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.13, C:0.03, G:0.27, T:0.57
Consensus pattern (15 bp):
GTTGCAATTTTTGGT
Found at i:8193550 original size:26 final size:26
Alignment explanation
Indices: 8193478--8193730 Score: 157
Period size: 26 Copynumber: 10.3 Consensus size: 26
8193468 GACTTTGGAT
* *
8193478 ATTGCATGACTAGTTTTTGAT-AGTC
1 ATTGCGTGACTAGTTTCTGATAAGTC
*
8193503 ATTGCGTGAC-AGTTTCTAATAAGTC
1 ATTGCGTGACTAGTTTCTGATAAGTC
**
8193528 ATTGCGTGACTAGTTTCTGATAAAAC
1 ATTGCGTGACTAGTTTCTGATAAGTC
* *
8193554 ATTACGTGACTAG--T-TGAT-AGGC
1 ATTGCGTGACTAGTTTCTGATAAGTC
* *
8193576 ATTGCGTGACT-GACTT-TG----GAC
1 ATTGCGTGACTAG-TTTCTGATAAGTC
* * *
8193597 ATTACGTGATTAGTTTTTGATAAAGT-
1 ATTGCGTGACTAGTTTCTGAT-AAGTC
*
8193623 ATTACGTGACTAGTTTCTGATAAGGT-
1 ATTGCGTGACTAGTTTCTGATAA-GTC
* *
8193649 ATTGTGTGACTAG--T-TGATAGGT-
1 ATTGCGTGACTAGTTTCTGATAAGTC
* * *
8193671 ATTGCATGACTAATTTTTGATAAGGT-
1 ATTGCGTGACTAGTTTCTGATAA-GTC
* *
8193697 ATTGTGTGACTAGTTTCTGATAAGGC
1 ATTGCGTGACTAGTTTCTGATAAGTC
8193723 ATTGCGTG
1 ATTGCGTG
8193731 TCTTCCTTTG
Statistics
Matches: 180, Mismatches: 30, Indels: 35
0.73 0.12 0.14
Matches are distributed among these distances:
21 14 0.08
22 27 0.15
23 9 0.05
24 14 0.08
25 31 0.17
26 84 0.47
27 1 0.01
ACGTcount: A:0.26, C:0.11, G:0.24, T:0.39
Consensus pattern (26 bp):
ATTGCGTGACTAGTTTCTGATAAGTC
Found at i:8193782 original size:94 final size:94
Alignment explanation
Indices: 8193671--8193869 Score: 283
Period size: 94 Copynumber: 2.1 Consensus size: 94
8193661 GTTGATAGGT
* * * *
8193671 ATTGCATGACTAATTTTTGATAAGGTATTGTGTGACTAGTTTCTGATAAGGCATTGCGTGTCTTC
1 ATTGCGTGACTAATTTTTGATAAGGCATTGCGTGACTAGTTTCTGATAAGGCATTGCGTGACTTC
*
8193736 CTTTGGGAATTGCT-TGACTGACTTTAAGA
66 CTTTGAGAATTG-TGTGACTGACTTTAAGA
* * * *
8193765 ATTGCGTGACTAGTTTTTGATAAGGCATTGCGTGACTAGTTTTTGATAAGGTATTGCGTGACTTT
1 ATTGCGTGACTAATTTTTGATAAGGCATTGCGTGACTAGTTTCTGATAAGGCATTGCGTGACTTC
* *
8193830 CTTTGAGAATTGTGTGACTTACTTTGAGA
66 CTTTGAGAATTGTGTGACTGACTTTAAGA
8193859 ATTGCGTGACT
1 ATTGCGTGACT
8193870 TACTTTGAAA
Statistics
Matches: 93, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
93 1 0.01
94 92 0.99
ACGTcount: A:0.23, C:0.12, G:0.25, T:0.41
Consensus pattern (94 bp):
ATTGCGTGACTAATTTTTGATAAGGCATTGCGTGACTAGTTTCTGATAAGGCATTGCGTGACTTC
CTTTGAGAATTGTGTGACTGACTTTAAGA
Found at i:8193795 original size:26 final size:26
Alignment explanation
Indices: 8193765--8193827 Score: 117
Period size: 26 Copynumber: 2.4 Consensus size: 26
8193755 GACTTTAAGA
8193765 ATTGCGTGACTAGTTTTTGATAAGGC
1 ATTGCGTGACTAGTTTTTGATAAGGC
*
8193791 ATTGCGTGACTAGTTTTTGATAAGGT
1 ATTGCGTGACTAGTTTTTGATAAGGC
8193817 ATTGCGTGACT
1 ATTGCGTGACT
8193828 TTCTTTGAGA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.22, C:0.11, G:0.27, T:0.40
Consensus pattern (26 bp):
ATTGCGTGACTAGTTTTTGATAAGGC
Found at i:8193846 original size:21 final size:21
Alignment explanation
Indices: 8193817--8193888 Score: 108
Period size: 21 Copynumber: 3.4 Consensus size: 21
8193807 TTGATAAGGT
*
8193817 ATTGCGTGACTTTCTTTGAGA
1 ATTGCGTGACTTACTTTGAGA
*
8193838 ATTGTGTGACTTACTTTGAGA
1 ATTGCGTGACTTACTTTGAGA
*
8193859 ATTGCGTGACTTACTTTGAAA
1 ATTGCGTGACTTACTTTGAGA
*
8193880 ATTACGTGA
1 ATTGCGTGA
8193889 TTAGTTTTTG
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 46 1.00
ACGTcount: A:0.25, C:0.12, G:0.22, T:0.40
Consensus pattern (21 bp):
ATTGCGTGACTTACTTTGAGA
Found at i:8193896 original size:115 final size:118
Alignment explanation
Indices: 8193662--8193920 Score: 312
Period size: 115 Copynumber: 2.2 Consensus size: 118
8193652 GTGTGACTAG
* * * *
8193662 TTGAT-AGGTATTGCATGACTAATTTTTGATAAGGTATTGTGTGACTAGTTTCTGATAAGGCATT
1 TTGATAAGGTATTGCGTGACTAGTTTTTGATAAGGTATTGCGTGAC-A-TTTCTGATAAGGAATT
* * * * *
8193726 GCGTGTCTTCCTTTGGGAATTGCTTGACTGACTTTAAGAATTGCGTGACTAGTTT
64 GCGTGACTTACTTTGAGAATTGCGTGACTGACTTTAAGAATTACGTGACTAGTTT
* * * *
8193781 TTGATAAGGCATTGCGTGACTAGTTTTTGATAAGGTATTGCGTGAC-TTTCT-TTGA-GAATTGT
1 TTGATAAGGTATTGCGTGACTAGTTTTTGATAAGGTATTGCGTGACATTTCTGATAAGGAATTGC
* *
8193843 GTGACTTACTTTGAGAATTGCGTGACTTACTTTGAA-AATTACGTGATTAGTTT
66 GTGACTTACTTTGAGAATTGCGTGACTGACTTT-AAGAATTACGTGACTAGTTT
*
8193896 TTGATAAAGTATTGCGTGACTAGTT
1 TTGATAAGGTATTGCGTGACTAGTT
8193921 GATAGGCATT
Statistics
Matches: 121, Mismatches: 17, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
115 71 0.59
116 4 0.03
117 5 0.04
119 5 0.04
120 36 0.30
ACGTcount: A:0.24, C:0.11, G:0.24, T:0.41
Consensus pattern (118 bp):
TTGATAAGGTATTGCGTGACTAGTTTTTGATAAGGTATTGCGTGACATTTCTGATAAGGAATTGC
GTGACTTACTTTGAGAATTGCGTGACTGACTTTAAGAATTACGTGACTAGTTT
Found at i:8193954 original size:23 final size:23
Alignment explanation
Indices: 8193906--8193993 Score: 117
Period size: 23 Copynumber: 3.9 Consensus size: 23
8193896 TTGATAAAGT
*
8193906 ATTGCGTGACTAGTT-G-ATAGGC
1 ATTGCGTGACTTGTTAGTA-AGGC
* *
8193928 ATTGCGTGATTTGTTATTAAGGC
1 ATTGCGTGACTTGTTAGTAAGGC
8193951 ATTGCGTGACTTGTTAGTAAGGC
1 ATTGCGTGACTTGTTAGTAAGGC
*
8193974 ATTGCGTGACTAGTTAGTAA
1 ATTGCGTGACTTGTTAGTAA
8193994 AGAATGTTAT
Statistics
Matches: 58, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
22 13 0.22
23 44 0.76
24 1 0.02
ACGTcount: A:0.24, C:0.11, G:0.28, T:0.36
Consensus pattern (23 bp):
ATTGCGTGACTTGTTAGTAAGGC
Found at i:8194675 original size:26 final size:26
Alignment explanation
Indices: 8194636--8194769 Score: 132
Period size: 26 Copynumber: 5.3 Consensus size: 26
8194626 GACTTTGGAC
* *
8194636 ATTACGTGATTAGTTTTTGATAAAGT
1 ATTACGTGACTAGTTTTTGATAAGGT
*
8194662 ATTACGTGACTAGTTTCTGATAAGGT
1 ATTACGTGACTAGTTTTTGATAAGGT
**
8194688 ATTGTGTGACTAG---TTGAT-AGGT
1 ATTACGTGACTAGTTTTTGATAAGGT
* * *
8194710 ATTGCATGACTAGTTTTTGATAAAGT
1 ATTACGTGACTAGTTTTTGATAAGGT
** * *
8194736 ATTGTGTGACTAGTTTCTGATAAGGC
1 ATTACGTGACTAGTTTTTGATAAGGT
8194762 ATTACGTG
1 ATTACGTG
8194770 TCTTCCTTTG
Statistics
Matches: 88, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
22 15 0.17
23 4 0.05
25 5 0.06
26 64 0.73
ACGTcount: A:0.27, C:0.08, G:0.24, T:0.41
Consensus pattern (26 bp):
ATTACGTGACTAGTTTTTGATAAGGT
Found at i:8194833 original size:26 final size:26
Alignment explanation
Indices: 8194804--8194874 Score: 90
Period size: 26 Copynumber: 2.8 Consensus size: 26
8194794 GACTTTAGGA
*
8194804 ATTGTGTGACTTGTTTTTGATAAGGC
1 ATTGCGTGACTTGTTTTTGATAAGGC
* * *
8194830 ATTGCATGACTAGTTTTTGATAAGGT
1 ATTGCGTGACTTGTTTTTGATAAGGC
*
8194856 ATTACGTGACTT-TTTTTGA
1 ATTGCGTGACTTGTTTTTGA
8194875 GAATTGCGTG
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
25 7 0.18
26 31 0.82
ACGTcount: A:0.23, C:0.08, G:0.23, T:0.46
Consensus pattern (26 bp):
ATTGCGTGACTTGTTTTTGATAAGGC
Found at i:8194840 original size:94 final size:94
Alignment explanation
Indices: 8194710--8194909 Score: 249
Period size: 94 Copynumber: 2.1 Consensus size: 94
8194700 GTTGATAGGT
* * * ** *
8194710 ATTGCATGACTAGTTTTTGATAAAGTATTGTGTGACTAGTTTCTGATAAGGCATTACGTGTCTTC
1 ATTGCGTGACTTGTTTTTGATAAAGCATTGCATGACTAGTTTCTGATAAGGCATTACGTGACTTC
* *
8194775 CTTTGGGAATTGCTTGACTGACTTT-AGGA
66 CTTTGAGAATTGCGTGACTGACTTTGA-GA
* * * * *
8194804 ATTGTGTGACTTGTTTTTGATAAGGCATTGCATGACTAGTTTTTGATAAGGTATTACGTGACTTT
1 ATTGCGTGACTTGTTTTTGATAAAGCATTGCATGACTAGTTTCTGATAAGGCATTACGTGACTTC
* *
8194869 TTTTGAGAATTGCGTGACTTACTTTGAGA
66 CTTTGAGAATTGCGTGACTGACTTTGAGA
8194898 ATTGCGTGACTT
1 ATTGCGTGACTT
8194910 ACTTTGAAAA
Statistics
Matches: 89, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
94 88 0.99
95 1 0.01
ACGTcount: A:0.23, C:0.12, G:0.23, T:0.42
Consensus pattern (94 bp):
ATTGCGTGACTTGTTTTTGATAAAGCATTGCATGACTAGTTTCTGATAAGGCATTACGTGACTTC
CTTTGAGAATTGCGTGACTGACTTTGAGA
Found at i:8194885 original size:21 final size:21
Alignment explanation
Indices: 8194860--8194927 Score: 100
Period size: 21 Copynumber: 3.2 Consensus size: 21
8194850 TAAGGTATTA
**
8194860 CGTGACTTTTTTTGAGAATTG
1 CGTGACTTACTTTGAGAATTG
8194881 CGTGACTTACTTTGAGAATTG
1 CGTGACTTACTTTGAGAATTG
* *
8194902 CGTGACTTACTTTGAAAATTA
1 CGTGACTTACTTTGAGAATTG
8194923 CGTGA
1 CGTGA
8194928 TTAGTTTTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.25, C:0.13, G:0.22, T:0.40
Consensus pattern (21 bp):
CGTGACTTACTTTGAGAATTG
Found at i:8194943 original size:115 final size:119
Alignment explanation
Indices: 8194701--8194959 Score: 289
Period size: 115 Copynumber: 2.2 Consensus size: 119
8194691 GTGTGACTAG
* ** *
8194701 TTGAT-AGGTATTGCATGACTAGTTTTTGATAAAGTATTGTGTGACTAGTTTCTGATAAGGCATT
1 TTGATAAGGCATTGCATGACTAGTTTTTGATAAAGTATTACGTGACTA-TTTCTGATAAGGAATT
* * * * * **
8194765 ACGTGTCTTCCTTTGGGAATTGCTTGACTGACTTTAGGAATTGTGTGACTTGTTT
65 ACGTGACTTACTTTGAGAATTGCGTGACTGACTTTAGAAATTACGTGACTTGTTT
* * * *
8194820 TTGATAAGGCATTGCATGACTAGTTTTTGATAAGGTATTACGTGACT-TTT-T-TTGA-GAATTG
1 TTGATAAGGCATTGCATGACTAGTTTTTGATAAAGTATTACGTGACTATTTCTGATAAGGAATTA
*
8194881 CGTGACTTACTTTGAGAATTGCGTGACTTACTTT-GAAAATTACGTGA-TTAGTTT
66 CGTGACTTACTTTGAGAATTGCGTGACTGACTTTAG-AAATTACGTGACTT-GTTT
*
8194935 TTTATAAGGCATTGCATGACTAGTT
1 TTGATAAGGCATTGCATGACTAGTT
8194960 GATAGTCATT
Statistics
Matches: 120, Mismatches: 17, Indels: 10
0.82 0.12 0.07
Matches are distributed among these distances:
114 3 0.03
115 69 0.57
116 2 0.02
117 1 0.01
118 3 0.03
119 5 0.04
120 37 0.31
ACGTcount: A:0.24, C:0.11, G:0.23, T:0.42
Consensus pattern (119 bp):
TTGATAAGGCATTGCATGACTAGTTTTTGATAAAGTATTACGTGACTATTTCTGATAAGGAATTA
CGTGACTTACTTTGAGAATTGCGTGACTGACTTTAGAAATTACGTGACTTGTTT
Found at i:8194996 original size:23 final size:23
Alignment explanation
Indices: 8194939--8195032 Score: 111
Period size: 23 Copynumber: 4.1 Consensus size: 23
8194929 TAGTTTTTTA
* *
8194939 TAAGGCATTGCATGACTAGTT-G
1 TAAGGCATTGCGTGACTTGTTAG
* * *
8194961 -ATAGTCATTGCGTGATTTGTTAT
1 TA-AGGCATTGCGTGACTTGTTAG
8194984 TAAGGCATTGCGTGACTTGTTAG
1 TAAGGCATTGCGTGACTTGTTAG
*
8195007 TAAGGCATTGCGTGACTAGTTAG
1 TAAGGCATTGCGTGACTTGTTAG
8195030 TAA
1 TAA
8195033 AGAATGTTAT
Statistics
Matches: 60, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
21 1 0.02
22 15 0.25
23 43 0.72
24 1 0.02
ACGTcount: A:0.26, C:0.12, G:0.27, T:0.36
Consensus pattern (23 bp):
TAAGGCATTGCGTGACTTGTTAG
Found at i:8195976 original size:15 final size:15
Alignment explanation
Indices: 8195956--8195997 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
8195946 ATCTTCCCTA
* *
8195956 CAATCACATTGCTTG
1 CAATCACATTACCTG
8195971 CAATCACATTACCTG
1 CAATCACATTACCTG
8195986 CAATCACATTAC
1 CAATCACATTAC
8195998 ATTGTAAAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.33, C:0.31, G:0.07, T:0.29
Consensus pattern (15 bp):
CAATCACATTACCTG
Found at i:8200641 original size:33 final size:35
Alignment explanation
Indices: 8200563--8200653 Score: 114
Period size: 33 Copynumber: 2.5 Consensus size: 35
8200553 TATAGGAAAA
* *
8200563 AAATTAAAATAAAATATAACCTAAGAAATTATATTAAAG
1 AAATGAAAATAAAATAT-A--TAAG-AATTATAATAAAG
8200602 AAATGAAAATAAAATATATAAG-ATTATAAT-AAG
1 AAATGAAAATAAAATATATAAGAATTATAATAAAG
8200635 AAATGAAAATAAAATATAT
1 AAATGAAAATAAAATATAT
8200654 GACATTAAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 6
0.86 0.03 0.10
Matches are distributed among these distances:
33 22 0.44
34 7 0.14
36 4 0.08
38 1 0.02
39 16 0.32
ACGTcount: A:0.64, C:0.02, G:0.07, T:0.27
Consensus pattern (35 bp):
AAATGAAAATAAAATATATAAGAATTATAATAAAG
Found at i:8200977 original size:43 final size:43
Alignment explanation
Indices: 8200915--8201000 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
8200905 AAACATCACC
*
8200915 TTAAGTTAGGTCAACCTCTAATTCCTACTAATAAAGACCTTAG
1 TTAAGTTAGATCAACCTCTAATTCCTACTAATAAAGACCTTAG
* *
8200958 TTAAGTTAGATCAATCTCTAATTCCTACTAATAAAGCCCTTAG
1 TTAAGTTAGATCAACCTCTAATTCCTACTAATAAAGACCTTAG
8201001 ACCATTGAGT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.35, C:0.21, G:0.10, T:0.34
Consensus pattern (43 bp):
TTAAGTTAGATCAACCTCTAATTCCTACTAATAAAGACCTTAG
Found at i:8201110 original size:28 final size:27
Alignment explanation
Indices: 8201042--8201110 Score: 72
Period size: 26 Copynumber: 2.6 Consensus size: 27
8201032 CATGATTTTT
*
8201042 TTTTATTTC-AATTTCTTTTTATTGTC
1 TTTTATTTCTAATTTCTTTTTATTATC
* *
8201068 -TTTATTTGTACTTTCTTTTT-TTAATC
1 TTTTATTTCTAATTTCTTTTTATT-ATC
8201094 TTTTAATTTCTAATTTC
1 TTTT-ATTTCTAATTTC
8201111 ATTGAAGATA
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
25 9 0.26
26 12 0.35
27 3 0.09
28 10 0.29
ACGTcount: A:0.17, C:0.12, G:0.03, T:0.68
Consensus pattern (27 bp):
TTTTATTTCTAATTTCTTTTTATTATC
Found at i:8203834 original size:11 final size:11
Alignment explanation
Indices: 8203818--8203845 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
8203808 TTGTTTACTC
8203818 TGTTTTTGTTT
1 TGTTTTTGTTT
8203829 TGTTTTTGTTT
1 TGTTTTTGTTT
8203840 TGTTTT
1 TGTTTT
8203846 CTTTCTCTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.00, C:0.00, G:0.18, T:0.82
Consensus pattern (11 bp):
TGTTTTTGTTT
Found at i:8212341 original size:28 final size:29
Alignment explanation
Indices: 8212283--8212348 Score: 80
Period size: 28 Copynumber: 2.3 Consensus size: 29
8212273 GTAAATTTTT
** *
8212283 AAAAATTACACTTTTACCCCCGTAAAGTG
1 AAAAATTACACTTTTACCCCCAAAAACTG
* *
8212312 AAAAATTATATTTTTA-CCCCAAAAACTG
1 AAAAATTACACTTTTACCCCCAAAAACTG
8212340 AAAAATTAC
1 AAAAATTAC
8212349 CCATAGACAT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
28 17 0.55
29 14 0.45
ACGTcount: A:0.45, C:0.20, G:0.06, T:0.29
Consensus pattern (29 bp):
AAAAATTACACTTTTACCCCCAAAAACTG
Found at i:8214103 original size:29 final size:28
Alignment explanation
Indices: 8214061--8214219 Score: 104
Period size: 29 Copynumber: 5.4 Consensus size: 28
8214051 CTTTAAGATA
*
8214061 TTTGTTTTAATTTAGACAAGAAAACATG
1 TTTGTCTTAATTTAGACAAGAAAACATG
* * *
8214089 TTTGGTCTTTATTTAGAGAAGAAAATATG
1 TTT-GTCTTAATTTAGACAAGAAAACATG
** * *
8214118 TTTGTCTTAATTTAAGATGAGAAAAATATTTT
1 TTTGTCTTAATTT-AGACAAG-AAAACA--TG
** * *
8214150 TTTGTCTTAACGTAGACAAGAAAATATAA
1 TTTGTCTTAATTTAGACAAGAAAACAT-G
* * *
8214179 TTT-TCTCAATTTAGACAAGATAAAATATT
1 TTTGTCTTAATTTAGACAAG--AAAACATG
8214208 TTTGTCTTAATT
1 TTTGTCTTAATT
8214220 ACAGACAAAA
Statistics
Matches: 104, Mismatches: 18, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
28 26 0.25
29 35 0.34
30 26 0.25
31 5 0.05
32 12 0.12
ACGTcount: A:0.38, C:0.07, G:0.13, T:0.42
Consensus pattern (28 bp):
TTTGTCTTAATTTAGACAAGAAAACATG
Found at i:8214146 original size:30 final size:29
Alignment explanation
Indices: 8214067--8214219 Score: 100
Period size: 30 Copynumber: 5.2 Consensus size: 29
8214057 GATATTTGTT
* *
8214067 TTAATTTAGACAAGAAAACATGTTTGGTC
1 TTAATTTAGAGAAGAAAATATGTTTGGTC
*
8214096 TTTATTTAGAGAAGAAAATATGTTT-GTC
1 TTAATTTAGAGAAGAAAATATGTTTGGTC
* *
8214124 TTAATTTA-AGATGAGAAAAATATTTTTTTGTC
1 TTAATTTAGAGA--AG-AAAATA-TGTTTGGTC
** * *
8214156 TTAACGTAGACAAGAAAATATAATTT--TC
1 TTAATTTAGAGAAGAAAATAT-GTTTGGTC
* * *
8214184 TCAATTTAGACAAGATAAAATAT-TTTTGTC
1 TTAATTTAGAGAAG--AAAATATGTTTGGTC
8214214 TTAATT
1 TTAATT
8214220 ACAGACAAAA
Statistics
Matches: 100, Mismatches: 13, Indels: 21
0.75 0.10 0.16
Matches are distributed among these distances:
27 3 0.03
28 26 0.26
29 25 0.25
30 29 0.29
31 6 0.06
32 9 0.09
33 2 0.02
ACGTcount: A:0.39, C:0.07, G:0.13, T:0.41
Consensus pattern (29 bp):
TTAATTTAGAGAAGAAAATATGTTTGGTC
Found at i:8220128 original size:34 final size:34
Alignment explanation
Indices: 8220088--8220168 Score: 90
Period size: 34 Copynumber: 2.4 Consensus size: 34
8220078 CACAAAAAAT
* *
8220088 ACAACCCTTACAATGCTTTTTCACAAGAGTAAGT
1 ACAACCCTTACAATGCTTTTTCACAAGAGCAAGC
* ** * * *
8220122 ATAACCCACACATTGCTTTTTTACGAGAGCAAGC
1 ACAACCCTTACAATGCTTTTTCACAAGAGCAAGC
8220156 ACAACCCTTACAA
1 ACAACCCTTACAA
8220169 AATTACCTTT
Statistics
Matches: 35, Mismatches: 12, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.36, C:0.27, G:0.11, T:0.26
Consensus pattern (34 bp):
ACAACCCTTACAATGCTTTTTCACAAGAGCAAGC
Found at i:8240672 original size:15 final size:15
Alignment explanation
Indices: 8240649--8240678 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8240639 TGCGTGTTTG
*
8240649 GTTGTAATTTTTGGT
1 GTTGCAATTTTTGGT
8240664 GTTGCAATTTTTGGT
1 GTTGCAATTTTTGGT
8240679 TTTTATTCCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.13, C:0.03, G:0.27, T:0.57
Consensus pattern (15 bp):
GTTGCAATTTTTGGT
Found at i:8240882 original size:25 final size:25
Alignment explanation
Indices: 8240854--8240925 Score: 92
Period size: 25 Copynumber: 2.9 Consensus size: 25
8240844 GACTTTGGAT
* *
8240854 ATTGCATGACTAGTTTTTGATAGTC
1 ATTGCGTGACTAGTTTATGATAGTC
* *
8240879 ATTGCGTGAC-AGTTTCTAATAAGTC
1 ATTGCGTGACTAGTTTATGAT-AGTC
8240904 ATTGCGTGACTAGTTTATGATA
1 ATTGCGTGACTAGTTTATGATA
8240926 AAACATTACG
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
24 8 0.20
25 24 0.60
26 8 0.20
ACGTcount: A:0.26, C:0.12, G:0.21, T:0.40
Consensus pattern (25 bp):
ATTGCGTGACTAGTTTATGATAGTC
Found at i:8240926 original size:26 final size:25
Alignment explanation
Indices: 8240854--8241106 Score: 124
Period size: 26 Copynumber: 10.3 Consensus size: 25
8240844 GACTTTGGAT
*
8240854 ATTGCATGACTAGTTTTTGAT-AGTC
1 ATTGCGTGACTAG-TTTTGATAAGTC
*
8240879 ATTGCGTGAC-AGTTTCTAATAAGTC
1 ATTGCGTGACTAGTTT-TGATAAGTC
**
8240904 ATTGCGTGACTAGTTTATGATAAAAC
1 ATTGCGTGACTAGTTT-TGATAAGTC
* * *
8240930 ATTACGTGATTAG--TTGAT-AGGC
1 ATTGCGTGACTAGTTTTGATAAGTC
* * *
8240952 ATTGCGTAACT-GACTTTG----GAC
1 ATTGCGTGACTAG-TTTTGATAAGTC
* *
8240973 ATTACGTGATTAGTTTTTGATAAAGT-
1 ATTGCGTGACTAG-TTTTGAT-AAGTC
*
8240999 ATTACGTGACTAGTTTCTGATAAGGT-
1 ATTGCGTGACTAGTTT-TGATAA-GTC
* *
8241025 ATTGTGTGACTAG--TTGATAGGT-
1 ATTGCGTGACTAGTTTTGATAAGTC
*
8241047 ATTGCATGACTAGTTTTTGATAAAGT-
1 ATTGCGTGACTAG-TTTTGAT-AAGTC
* *
8241073 ATTGTGTGACTAGTTTCTGATAAGGC
1 ATTGCGTGACTAGTTT-TGATAAGTC
*
8241099 ATTACGTG
1 ATTGCGTG
8241107 TCTTCCTTTG
Statistics
Matches: 176, Mismatches: 32, Indels: 39
0.71 0.13 0.16
Matches are distributed among these distances:
21 11 0.06
22 28 0.16
23 12 0.07
24 10 0.06
25 39 0.22
26 75 0.43
27 1 0.01
ACGTcount: A:0.27, C:0.11, G:0.23, T:0.39
Consensus pattern (25 bp):
ATTGCGTGACTAGTTTTGATAAGTC
Found at i:8241170 original size:26 final size:26
Alignment explanation
Indices: 8241141--8241211 Score: 90
Period size: 26 Copynumber: 2.8 Consensus size: 26
8241131 GACTTTAGGA
*
8241141 ATTGTGTGACTTGTTTTTGATAAGGC
1 ATTGCGTGACTTGTTTTTGATAAGGC
* * *
8241167 ATTGCATGACTAGTTTTTGATAAGGT
1 ATTGCGTGACTTGTTTTTGATAAGGC
*
8241193 ATTACGTGACTT-TTTTTGA
1 ATTGCGTGACTTGTTTTTGA
8241212 GAATTGCGTG
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
25 7 0.18
26 31 0.82
ACGTcount: A:0.23, C:0.08, G:0.23, T:0.46
Consensus pattern (26 bp):
ATTGCGTGACTTGTTTTTGATAAGGC
Found at i:8241177 original size:94 final size:94
Alignment explanation
Indices: 8241047--8241246 Score: 249
Period size: 94 Copynumber: 2.1 Consensus size: 94
8241037 GTTGATAGGT
* * * ** *
8241047 ATTGCATGACTAGTTTTTGATAAAGTATTGTGTGACTAGTTTCTGATAAGGCATTACGTGTCTTC
1 ATTGCGTGACTTGTTTTTGATAAAGCATTGCATGACTAGTTTCTGATAAGGCATTACGTGACTTC
* *
8241112 CTTTGGGAATTGCTTGACTGACTTT-AGGA
66 CTTTGAGAATTGCGTGACTGACTTTGA-GA
* * * * *
8241141 ATTGTGTGACTTGTTTTTGATAAGGCATTGCATGACTAGTTTTTGATAAGGTATTACGTGACTTT
1 ATTGCGTGACTTGTTTTTGATAAAGCATTGCATGACTAGTTTCTGATAAGGCATTACGTGACTTC
* *
8241206 TTTTGAGAATTGCGTGACTTACTTTGAGA
66 CTTTGAGAATTGCGTGACTGACTTTGAGA
8241235 ATTGCGTGACTT
1 ATTGCGTGACTT
8241247 ACTTTGAAAA
Statistics
Matches: 89, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
94 88 0.99
95 1 0.01
ACGTcount: A:0.23, C:0.12, G:0.23, T:0.42
Consensus pattern (94 bp):
ATTGCGTGACTTGTTTTTGATAAAGCATTGCATGACTAGTTTCTGATAAGGCATTACGTGACTTC
CTTTGAGAATTGCGTGACTGACTTTGAGA
Found at i:8241222 original size:21 final size:21
Alignment explanation
Indices: 8241197--8241264 Score: 100
Period size: 21 Copynumber: 3.2 Consensus size: 21
8241187 TAAGGTATTA
**
8241197 CGTGACTTTTTTTGAGAATTG
1 CGTGACTTACTTTGAGAATTG
8241218 CGTGACTTACTTTGAGAATTG
1 CGTGACTTACTTTGAGAATTG
* *
8241239 CGTGACTTACTTTGAAAATTA
1 CGTGACTTACTTTGAGAATTG
8241260 CGTGA
1 CGTGA
8241265 TTAGTTTTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.25, C:0.13, G:0.22, T:0.40
Consensus pattern (21 bp):
CGTGACTTACTTTGAGAATTG
Found at i:8241280 original size:115 final size:119
Alignment explanation
Indices: 8241038--8241296 Score: 289
Period size: 115 Copynumber: 2.2 Consensus size: 119
8241028 GTGTGACTAG
* ** *
8241038 TTGAT-AGGTATTGCATGACTAGTTTTTGATAAAGTATTGTGTGACTAGTTTCTGATAAGGCATT
1 TTGATAAGGCATTGCATGACTAGTTTTTGATAAAGTATTACGTGACTA-TTTCTGATAAGGAATT
* * * * * **
8241102 ACGTGTCTTCCTTTGGGAATTGCTTGACTGACTTTAGGAATTGTGTGACTTGTTT
65 ACGTGACTTACTTTGAGAATTGCGTGACTGACTTTAGAAATTACGTGACTTGTTT
* * * *
8241157 TTGATAAGGCATTGCATGACTAGTTTTTGATAAGGTATTACGTGACT-TTT-T-TTGA-GAATTG
1 TTGATAAGGCATTGCATGACTAGTTTTTGATAAAGTATTACGTGACTATTTCTGATAAGGAATTA
*
8241218 CGTGACTTACTTTGAGAATTGCGTGACTTACTTT-GAAAATTACGTGA-TTAGTTT
66 CGTGACTTACTTTGAGAATTGCGTGACTGACTTTAG-AAATTACGTGACTT-GTTT
*
8241272 TTTATAAGGCATTGCATGACTAGTT
1 TTGATAAGGCATTGCATGACTAGTT
8241297 GATAGTCATT
Statistics
Matches: 120, Mismatches: 17, Indels: 10
0.82 0.12 0.07
Matches are distributed among these distances:
114 3 0.03
115 69 0.57
116 2 0.02
117 1 0.01
118 3 0.03
119 5 0.04
120 37 0.31
ACGTcount: A:0.24, C:0.11, G:0.23, T:0.42
Consensus pattern (119 bp):
TTGATAAGGCATTGCATGACTAGTTTTTGATAAAGTATTACGTGACTATTTCTGATAAGGAATTA
CGTGACTTACTTTGAGAATTGCGTGACTGACTTTAGAAATTACGTGACTTGTTT
Found at i:8241333 original size:23 final size:23
Alignment explanation
Indices: 8241276--8241369 Score: 111
Period size: 23 Copynumber: 4.1 Consensus size: 23
8241266 TAGTTTTTTA
* *
8241276 TAAGGCATTGCATGACTAGTT-G
1 TAAGGCATTGCGTGACTTGTTAG
* * *
8241298 -ATAGTCATTGCGTGATTTGTTAT
1 TA-AGGCATTGCGTGACTTGTTAG
8241321 TAAGGCATTGCGTGACTTGTTAG
1 TAAGGCATTGCGTGACTTGTTAG
*
8241344 TAAGGCATTGCGTGACTAGTTAG
1 TAAGGCATTGCGTGACTTGTTAG
8241367 TAA
1 TAA
8241370 AGAATGTTAT
Statistics
Matches: 60, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
21 1 0.02
22 15 0.25
23 43 0.72
24 1 0.02
ACGTcount: A:0.26, C:0.12, G:0.27, T:0.36
Consensus pattern (23 bp):
TAAGGCATTGCGTGACTTGTTAG
Found at i:8242331 original size:15 final size:15
Alignment explanation
Indices: 8242311--8242352 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
8242301 ATTTTTCCTA
* *
8242311 CAATCACATTGCTTG
1 CAATCACATTACCTG
8242326 CAATCACATTACCTG
1 CAATCACATTACCTG
8242341 CAATCACATTAC
1 CAATCACATTAC
8242353 ATTGTAAAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.33, C:0.31, G:0.07, T:0.29
Consensus pattern (15 bp):
CAATCACATTACCTG
Found at i:8243089 original size:4 final size:4
Alignment explanation
Indices: 8243082--8243119 Score: 76
Period size: 4 Copynumber: 9.5 Consensus size: 4
8243072 TATATATATA
8243082 TATG TATG TATG TATG TATG TATG TATG TATG TATG TA
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TA
8243120 CATATTCGTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 34 1.00
ACGTcount: A:0.26, C:0.00, G:0.24, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:8245863 original size:40 final size:41
Alignment explanation
Indices: 8245792--8245868 Score: 104
Period size: 40 Copynumber: 1.9 Consensus size: 41
8245782 TAATACTGTT
* **
8245792 GGTGATAGAATTACAAGTTTTCATTTGAGTTCTTTCACTTG
1 GGTGATAGAATTACAAGTTTGCATTCAAGTTCTTTCACTTG
8245833 GGTGATAGAA-TACAAGTTTGC-TTCCAAGTTCTTTCA
1 GGTGATAGAATTACAAGTTTGCATT-CAAGTTCTTTCA
8245869 ATTGTTTCTC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
39 2 0.06
40 20 0.62
41 10 0.31
ACGTcount: A:0.26, C:0.14, G:0.19, T:0.40
Consensus pattern (41 bp):
GGTGATAGAATTACAAGTTTGCATTCAAGTTCTTTCACTTG
Found at i:8246919 original size:32 final size:31
Alignment explanation
Indices: 8246866--8246944 Score: 86
Period size: 32 Copynumber: 2.5 Consensus size: 31
8246856 GGAAAAAGAA
* * *
8246866 ATTAAAATATAACATATAATATAGAAAATTAT
1 ATTAAAA-ATAAAATAAAATATAGAAAACTAT
* *
8246898 ATTAAAAATGAAAATAAAATATATAATACTAT
1 ATTAAAAAT-AAAATAAAATATAGAAAACTAT
*
8246930 AATAAAAATAAAATA
1 ATTAAAAATAAAATA
8246945 TAGCATATTA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
31 8 0.20
32 32 0.80
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.30
Consensus pattern (31 bp):
ATTAAAAATAAAATAAAATATAGAAAACTAT
Found at i:8247285 original size:43 final size:43
Alignment explanation
Indices: 8247229--8247357 Score: 240
Period size: 43 Copynumber: 3.0 Consensus size: 43
8247219 AAACGCCACC
*
8247229 TTAAGTTATATCAATCTCTAATTCCTACTAATAAAGACCTTAG
1 TTAAGTTAGATCAATCTCTAATTCCTACTAATAAAGACCTTAG
8247272 TTAAGTTAGATCAATCTCTAATTCCTACTAATAAAGACCTTAG
1 TTAAGTTAGATCAATCTCTAATTCCTACTAATAAAGACCTTAG
*
8247315 TTAAGTTAGATCAATCTCTAATTCCTACTAATAAAGCCCTTAG
1 TTAAGTTAGATCAATCTCTAATTCCTACTAATAAAGACCTTAG
8247358 ACCATTGAGT
Statistics
Matches: 84, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 84 1.00
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.36
Consensus pattern (43 bp):
TTAAGTTAGATCAATCTCTAATTCCTACTAATAAAGACCTTAG
Found at i:8256219 original size:21 final size:22
Alignment explanation
Indices: 8256182--8256224 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
8256172 ATTTTATGAT
*
8256182 TTAATTTATAAATTAAA-ATTA
1 TTAATTTATAAAGTAAAGATTA
8256203 TTAATTTGAT-AAGTAAAGATTA
1 TTAATTT-ATAAAGTAAAGATTA
8256225 AACACATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (22 bp):
TTAATTTATAAAGTAAAGATTA
Found at i:8256304 original size:22 final size:21
Alignment explanation
Indices: 8256262--8256312 Score: 50
Period size: 22 Copynumber: 2.3 Consensus size: 21
8256252 ATATTATTGG
**
8256262 TAATTAAATTATTAATCTTAT
1 TAATTAAATTATTAAAATTAT
8256283 ATAATTAAA-TATATAAAATTAT
1 -TAATTAAATTAT-TAAAATTAT
8256305 TAAATTAA
1 T-AATTAA
8256313 TTAAAATTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 4 0.16
22 21 0.84
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (21 bp):
TAATTAAATTATTAAAATTAT
Found at i:8261113 original size:35 final size:35
Alignment explanation
Indices: 8261034--8261114 Score: 92
Period size: 35 Copynumber: 2.3 Consensus size: 35
8261024 TGCGTAAAGC
*
8261034 AACGCTTCACTTGTTCTAGTTGTTTTATGTGAAGT
1 AACGCTTCACTTGTTCTAGTTGTTTTACGTGAAGT
** *
8261069 AACATTTCACTTGTT-TCAGTTGTTTTGCGTGAAGT
1 AACGCTTCACTTGTTCT-AGTTGTTTTACGTGAAGT
**
8261104 AGTGCTTCACT
1 AACGCTTCACT
8261115 CATTTTAGTT
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
34 1 0.03
35 36 0.97
ACGTcount: A:0.20, C:0.16, G:0.20, T:0.44
Consensus pattern (35 bp):
AACGCTTCACTTGTTCTAGTTGTTTTACGTGAAGT
Found at i:8268486 original size:59 final size:58
Alignment explanation
Indices: 8268360--8268533 Score: 160
Period size: 59 Copynumber: 3.0 Consensus size: 58
8268350 TGGTAGCTTT
* * * * * *
8268360 AACATGTTTGTTTTAATTTAGACAA-GAAAACAAATTTGGTA--TTAATTTAGATAAGAA
1 AACATATTTGTCTTAATTTAGACAAGGAAAA-ATATTT-TTATCTTAATATAGACAAGAA
* * *
8268417 AATATGTTTGTCTTAATTTA-A-AATGAGAAAAATATTTTTTGTCTTAATATAGACAAGAA
1 AACATATTTGTCTTAATTTAGACAA-G-GAAAAATA-TTTTTATCTTAATATAGACAAGAA
* *
8268476 AACATATTTGTCTTAATTTAGACAAGGTAAAATATTTTTATCTTAATTACAGACAAGA
1 AACATATTTGTCTTAATTTAGACAAGGAAAAATATTTTTATCTTAA-TATAGACAAGA
8268534 GTTGTCTGTA
Statistics
Matches: 96, Mismatches: 12, Indels: 16
0.77 0.10 0.13
Matches are distributed among these distances:
55 2 0.02
56 1 0.01
57 21 0.22
58 19 0.20
59 49 0.51
60 2 0.02
61 2 0.02
ACGTcount: A:0.43, C:0.07, G:0.12, T:0.39
Consensus pattern (58 bp):
AACATATTTGTCTTAATTTAGACAAGGAAAAATATTTTTATCTTAATATAGACAAGAA
Found at i:8268497 original size:28 final size:28
Alignment explanation
Indices: 8268360--8268533 Score: 136
Period size: 28 Copynumber: 6.0 Consensus size: 28
8268350 TGGTAGCTTT
* *
8268360 AACATGTTTGTTTTAATTTAGACAAGAA
1 AACATATTTGTCTTAATTTAGACAAGAA
* * *
8268388 AACAAATTTGGTATTAATTTAGATAAGAA
1 AACATATTT-GTCTTAATTTAGACAAGAA
* *
8268417 AATATGTTTGTCTTAATTTA-A-AATGAGA
1 AACATATTTGTCTTAATTTAGACAA-GA-A
* *
8268445 AAAATATTTTTTGTCTTAATATAGACAAGAA
1 AACATA---TTTGTCTTAATTTAGACAAGAA
8268476 AACATATTTGTCTTAATTTAGACAAGGTAA
1 AACATATTTGTCTTAATTTAGACAA-G-AA
* * * *
8268506 AATATTTTTATCTTAATTACAGACAAGA
1 AACATATTTGTCTTAATT-TAGACAAGA
8268534 GTTGTCTGTA
Statistics
Matches: 118, Mismatches: 17, Indels: 21
0.76 0.11 0.13
Matches are distributed among these distances:
26 2 0.02
27 3 0.03
28 40 0.34
29 25 0.21
30 18 0.15
31 25 0.21
32 3 0.03
33 2 0.02
ACGTcount: A:0.43, C:0.07, G:0.12, T:0.39
Consensus pattern (28 bp):
AACATATTTGTCTTAATTTAGACAAGAA
Found at i:8268687 original size:17 final size:17
Alignment explanation
Indices: 8268665--8268697 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
8268655 ATAATAATAA
8268665 AATAA-GAGTTATTATTC
1 AATAAGGAGTT-TTATTC
8268682 AATAAGGAGTTTTATT
1 AATAAGGAGTTTTATT
8268698 TTATCAAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.39, C:0.03, G:0.15, T:0.42
Consensus pattern (17 bp):
AATAAGGAGTTTTATTC
Found at i:8284885 original size:15 final size:15
Alignment explanation
Indices: 8284867--8284906 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
8284857 CATTGTTTGC
8284867 AATCACATTACTTAT
1 AATCACATTACTTAT
*
8284882 AATCACATTACTTGT
1 AATCACATTACTTAT
*
8284897 AATCATATTA
1 AATCACATTA
8284907 TATTGTAAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.40, C:0.17, G:0.03, T:0.40
Consensus pattern (15 bp):
AATCACATTACTTAT
Found at i:8289586 original size:17 final size:16
Alignment explanation
Indices: 8289560--8289591 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
8289550 ATTAATATAA
8289560 TTTTATTTTTTAATTT
1 TTTTATTTTTTAATTT
8289576 TTTTAATTTTTTAATT
1 TTTT-ATTTTTTAATT
8289592 CAATTTTTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTTATTTTTTAATTT
Found at i:8300458 original size:25 final size:25
Alignment explanation
Indices: 8300430--8300485 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
8300420 TCGCAACCAC
*
8300430 GTATATCAACTTGTGGCCTAGCCAT
1 GTATATCAACCTGTGGCCTAGCCAT
*
8300455 GTATATCAACCTGTGGCCTTGCCAT
1 GTATATCAACCTGTGGCCTAGCCAT
*
8300480 ATATAT
1 GTATAT
8300486 GTATCACAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (25 bp):
GTATATCAACCTGTGGCCTAGCCAT
Found at i:8302702 original size:54 final size:54
Alignment explanation
Indices: 8302533--8302707 Score: 251
Period size: 54 Copynumber: 3.2 Consensus size: 54
8302523 AAAACATTTT
* *
8302533 ATCTCACCTAGCTCATGTGCATCCCATCACATCGTGCACATAGCCGGACACCAC
1 ATCTCACCCAGCTCATGTGCATCCCACCACATCGTGCACATAGCCGGACACCAC
* * * *
8302587 ATCGCACCCAGCTCATGTGCATCCCACCACATCGTGAACATAGTCGGACATCAC
1 ATCTCACCCAGCTCATGTGCATCCCACCACATCGTGCACATAGCCGGACACCAC
* * *
8302641 ATCTCACCCAGCTCATATGCATCCAACCACATCGTGCACATAGCCGGACACCTC
1 ATCTCACCCAGCTCATGTGCATCCCACCACATCGTGCACATAGCCGGACACCAC
* *
8302695 ATTTCACCTAGCT
1 ATCTCACCCAGCT
8302708 TATGCACGGT
Statistics
Matches: 106, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 106 1.00
ACGTcount: A:0.27, C:0.38, G:0.14, T:0.21
Consensus pattern (54 bp):
ATCTCACCCAGCTCATGTGCATCCCACCACATCGTGCACATAGCCGGACACCAC
Found at i:8321011 original size:17 final size:17
Alignment explanation
Indices: 8320962--8321011 Score: 50
Period size: 17 Copynumber: 2.9 Consensus size: 17
8320952 ATTATATATA
* *
8320962 TTCTTATTAAAGTAAAT
1 TTCTTATTAAAATAATT
8320979 TT-TT-TTAATTAATAATT
1 TTCTTATTAA--AATAATT
8320996 TTCTTATTAAAATAAT
1 TTCTTATTAAAATAAT
8321012 ATTCATTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
15 4 0.15
16 2 0.07
17 15 0.56
18 2 0.07
19 4 0.15
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.54
Consensus pattern (17 bp):
TTCTTATTAAAATAATT
Found at i:8328675 original size:29 final size:29
Alignment explanation
Indices: 8328641--8328696 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
8328631 TATTTAAAAA
* * *
8328641 ATTTAGATAAGTTTTTATTTTTTTATTAT
1 ATTTAGATAAGTCTCTATATTTTTATTAT
*
8328670 ATTTAGTTAAGTCTCTATATTTTTATT
1 ATTTAGATAAGTCTCTATATTTTTATT
8328697 TTAAGTCAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.27, C:0.04, G:0.07, T:0.62
Consensus pattern (29 bp):
ATTTAGATAAGTCTCTATATTTTTATTAT
Found at i:8330398 original size:4 final size:4
Alignment explanation
Indices: 8330380--8330458 Score: 53
Period size: 4 Copynumber: 21.0 Consensus size: 4
8330370 TTGTAGACAC
*
8330380 TAAA AAAA T-AA TAAA TAAA TAAA T-AA T-AA T-AA TAAAA TAAA -AAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA T-AAA TAAA TAAA
* * * * *
8330424 TAAA TATA TAAG TATA -AAA TATA TAAA TAAT TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
8330459 AGAGAGAGAA
Statistics
Matches: 58, Mismatches: 12, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
3 17 0.29
4 38 0.66
5 3 0.05
ACGTcount: A:0.71, C:0.00, G:0.01, T:0.28
Consensus pattern (4 bp):
TAAA
Found at i:8330403 original size:15 final size:16
Alignment explanation
Indices: 8330380--8330459 Score: 67
Period size: 15 Copynumber: 5.0 Consensus size: 16
8330370 TTGTAGACAC
*
8330380 TAAAAAAATAAT-AAA
1 TAAATAAATAATAAAA
8330395 TAAATAAATAATAATAA
1 TAAATAAATAATAA-AA
*
8330412 TAAAATAAAAAAT-AAA
1 T-AAATAAATAATAAAA
* *
8330428 TATATAAGT-ATAAAA
1 TAAATAAATAATAAAA
*
8330443 TATATAAATAATTAAAA
1 TAAATAAATAA-TAAAA
8330460 GAGAGAGAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
14 2 0.04
15 27 0.51
16 5 0.09
17 9 0.17
18 10 0.19
ACGTcount: A:0.71, C:0.00, G:0.01, T:0.28
Consensus pattern (16 bp):
TAAATAAATAATAAAA
Found at i:8330412 original size:21 final size:21
Alignment explanation
Indices: 8330386--8330426 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
8330376 ACACTAAAAA
8330386 AATAAT-AAATAAATAAATAAT
1 AATAATAAAATAAA-AAATAAT
8330407 AATAATAAAATAAAAAATAA
1 AATAATAAAATAAAAAATAA
8330427 ATATATAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (21 bp):
AATAATAAAATAAAAAATAAT
Found at i:8331749 original size:21 final size:19
Alignment explanation
Indices: 8331708--8331752 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 19
8331698 ACAAAAGTAG
* *
8331708 ATAAAATAAAATAAAATAA
1 ATAAAATAAAACAAAACAA
8331727 ATAAAATATATAACAAAACAA
1 ATAAAATA-A-AACAAAACAA
8331748 ATAAA
1 ATAAA
8331753 TACATTTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 8 0.36
20 1 0.05
21 13 0.59
ACGTcount: A:0.76, C:0.04, G:0.00, T:0.20
Consensus pattern (19 bp):
ATAAAATAAAACAAAACAA
Found at i:8332417 original size:24 final size:25
Alignment explanation
Indices: 8332372--8332427 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 25
8332362 GTAAAAGAAT
* *
8332372 AAAATAAAATGATATGACAATAA-A
1 AAAATAAAATAAAATGACAATAATA
**
8332396 AAAATAAAATAAAATGGTAATAATA
1 AAAATAAAATAAAATGACAATAATA
*
8332421 ATAATAA
1 AAAATAA
8332428 TAAAAATAGT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
24 19 0.73
25 7 0.27
ACGTcount: A:0.68, C:0.02, G:0.07, T:0.23
Consensus pattern (25 bp):
AAAATAAAATAAAATGACAATAATA
Found at i:8332470 original size:18 final size:16
Alignment explanation
Indices: 8332444--8332488 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 16
8332434 TAGTTAATTG
8332444 CATTAGCATAGCACATAT
1 CATT-GCATA-CACATAT
8332462 ACATTGCATCACACATAT
1 -CATTGCAT-ACACATAT
8332480 CATTGCATA
1 CATTGCATA
8332489 TAAGTATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 1 0.04
17 8 0.32
18 11 0.44
19 5 0.20
ACGTcount: A:0.38, C:0.24, G:0.09, T:0.29
Consensus pattern (16 bp):
CATTGCATACACATAT
Found at i:8335234 original size:3 final size:3
Alignment explanation
Indices: 8335228--8335303 Score: 50
Period size: 3 Copynumber: 24.7 Consensus size: 3
8335218 GTATAAAAAA
* * * *
8335228 AAT AAT AAT AAGA AAT AAG AAT AGAA AAT -AT GAT AAT AA- AAT ATAT
1 AAT AAT AAT AA-T AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT A-AT
8335274 AAT AA- AAT AAT AAT AATT AATT AAT AAT AA
1 AAT AAT AAT AAT AAT AA-T AA-T AAT AAT AA
8335304 CAAAAAATAT
Statistics
Matches: 59, Mismatches: 7, Indels: 14
0.74 0.09 0.17
Matches are distributed among these distances:
2 6 0.10
3 39 0.66
4 14 0.24
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:8335277 original size:12 final size:12
Alignment explanation
Indices: 8335252--8335289 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
8335242 ATAAGAATAG
8335252 AAAATATGATAAT
1 AAAATAT-ATAAT
8335265 AAAATATATAAT
1 AAAATATATAAT
8335277 AAAATA-ATAAT
1 AAAATATATAAT
8335288 AA
1 AA
8335290 TTAATTAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 7 0.28
12 11 0.44
13 7 0.28
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (12 bp):
AAAATATATAAT
Found at i:8335298 original size:14 final size:14
Alignment explanation
Indices: 8335226--8335312 Score: 69
Period size: 13 Copynumber: 6.6 Consensus size: 14
8335216 AAGTATAAAA
8335226 AAAATAATAATAA-
1 AAAATAATAATAAT
* * *
8335239 GAAATAAGAAT-AG
1 AAAATAATAATAAT
*
8335252 AAAAT-ATGATAAT
1 AAAATAATAATAAT
8335265 AAAAT-AT-ATAAT
1 AAAATAATAATAAT
8335277 AAAATAATAATAAT
1 AAAATAATAATAAT
* * *
8335291 TAATTAATAATAAC
1 AAAATAATAATAAT
8335305 AAAA-AATA
1 AAAATAATA
8335313 TAGATAATTG
Statistics
Matches: 59, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
12 14 0.24
13 27 0.46
14 18 0.31
ACGTcount: A:0.68, C:0.01, G:0.05, T:0.26
Consensus pattern (14 bp):
AAAATAATAATAAT
Found at i:8347369 original size:39 final size:38
Alignment explanation
Indices: 8347275--8347583 Score: 385
Period size: 39 Copynumber: 8.1 Consensus size: 38
8347265 AAAAAAGGTT
* * *
8347275 TCGTTGCCTCAATTTTGAGGAATTCATTTTTAAAGGT-
1 TCGTTGCCTCAGTTTTGAGGAGTTCATTTTTAAAAGTC
* * * *
8347312 ACGTTGCCTCAGCTTTGAGGAGCTCACTTTTAAAAGTTC
1 TCGTTGCCTCAGTTTTGAGGAGTTCATTTTTAAAAG-TC
*
8347351 TCATTGCCTCAGTTTTGAGGAGTTCATTTTTAAAAGTCC
1 TCGTTGCCTCAGTTTTGAGGAGTTCATTTTTAAAAGT-C
* * *
8347390 TTGGTGCCTCAGCTTTGAGGAGTTCATTTTTAAAA-TC
1 TCGTTGCCTCAGTTTTGAGGAGTTCATTTTTAAAAGTC
*
8347427 TCGTTGTCTCAGTTTTGAGGAGTTCATTTTT-AAAGTC
1 TCGTTGCCTCAGTTTTGAGGAGTTCATTTTTAAAAGTC
8347464 TCGTTGCCTCAGTTTTTGAGGAAGTTCATTTTT-AAAGTC
1 TCGTTGCCTCAG-TTTTGAGG-AGTTCATTTTTAAAAGTC
* * * *
8347503 TCGTTGCCCCAGCTTTGAGGAGCTCACTTTTAAAAAGTTC
1 TCGTTGCCTCAGTTTTGAGGAGTTCA-TTTTTAAAAG-TC
8347543 TCGTTGCCTCAGTTTTGAGGAGTTCATTTTT-AAAGTC
1 TCGTTGCCTCAGTTTTGAGGAGTTCATTTTTAAAAGTC
8347580 TCGT
1 TCGT
8347584 NNNNNNNNNN
Statistics
Matches: 234, Mismatches: 29, Indels: 18
0.83 0.10 0.06
Matches are distributed among these distances:
36 3 0.01
37 81 0.35
38 26 0.11
39 99 0.42
40 25 0.11
ACGTcount: A:0.21, C:0.18, G:0.20, T:0.40
Consensus pattern (38 bp):
TCGTTGCCTCAGTTTTGAGGAGTTCATTTTTAAAAGTC
Found at i:8347438 original size:76 final size:75
Alignment explanation
Indices: 8347275--8347583 Score: 379
Period size: 76 Copynumber: 4.1 Consensus size: 75
8347265 AAAAAAGGTT
* * * * * *
8347275 TCGTTGCCTCAATTTTGAGGAATTCATTTTTAAAGGT-ACGTTGCCTCAGCTTTGAGGAGCTCAC
1 TCGTTGCCTCAGTTTTGAGGAGTTCATTTTTAAAAGTCTCGTTGCCTCAGCTTTGAGGAGTTCAT
8347339 TTTTAAAAGTTC
66 TTTTAAAA--TC
* * *
8347351 TCATTGCCTCAGTTTTGAGGAGTTCATTTTTAAAAGTCCTTGGTGCCTCAGCTTTGAGGAGTTCA
1 TCGTTGCCTCAGTTTTGAGGAGTTCATTTTTAAAAGT-CTCGTTGCCTCAGCTTTGAGGAGTTCA
8347416 TTTTTAAAATC
65 TTTTTAAAATC
* *
8347427 TCGTTGTCTCAGTTTTGAGGAGTTCATTTTT-AAAGTCTCGTTGCCTCAGTTTTTGAGGAAGTTC
1 TCGTTGCCTCAGTTTTGAGGAGTTCATTTTTAAAAGTCTCGTTGCCTCAG-CTTTGAGG-AGTTC
*
8347491 ATTTTTAAAGTC
64 ATTTTTAAAATC
* * * * *
8347503 TCGTTGCCCCAGCTTTGAGGAGCTCACTTTTAAAAAGTTCTCGTTGCCTCAGTTTTGAGGAGTTC
1 TCGTTGCCTCAGTTTTGAGGAGTTCA-TTTTTAAAAG-TCTCGTTGCCTCAGCTTTGAGGAGTTC
*
8347568 ATTTTTAAAGTC
64 ATTTTTAAAATC
8347580 TCGT
1 TCGT
8347584 NNNNNNNNNN
Statistics
Matches: 206, Mismatches: 20, Indels: 13
0.86 0.08 0.05
Matches are distributed among these distances:
74 11 0.05
75 12 0.06
76 102 0.50
77 25 0.12
78 42 0.20
79 14 0.07
ACGTcount: A:0.21, C:0.18, G:0.20, T:0.40
Consensus pattern (75 bp):
TCGTTGCCTCAGTTTTGAGGAGTTCATTTTTAAAAGTCTCGTTGCCTCAGCTTTGAGGAGTTCAT
TTTTAAAATC
Found at i:8361073 original size:37 final size:39
Alignment explanation
Indices: 8361023--8361102 Score: 103
Period size: 37 Copynumber: 2.1 Consensus size: 39
8361013 CATTTTTAAT
*
8361023 TTTTAAGAAATTTTCAAAATAATAAACATA-AAAATA-TA
1 TTTTAAGAAATTTT-AAAATAATAAACAAATAAAATATTA
* *
8361061 TTTTAA-AAATTTTAAAATTATTAACAAATAAAATATTA
1 TTTTAAGAAATTTTAAAATAATAAACAAATAAAATATTA
8361099 TTTT
1 TTTT
8361103 TTTATTAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
36 12 0.32
37 13 0.35
38 12 0.32
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.41
Consensus pattern (39 bp):
TTTTAAGAAATTTTAAAATAATAAACAAATAAAATATTA
Found at i:8361092 original size:38 final size:38
Alignment explanation
Indices: 8361023--8361102 Score: 94
Period size: 38 Copynumber: 2.1 Consensus size: 38
8361013 CATTTTTAAT
*
8361023 TTTTAAGAAATTTTCAAAATAATAAACATAAAA-ATATA
1 TTTTAAGAAATTTTCAAAATAATAAAAATAAAATAT-TA
*
8361061 TTTTAA-AAATTTT-AAAATTATTAACAAATAAAATATTA
1 TTTTAAGAAATTTTCAAAA-TAATAA-AAATAAAATATTA
8361099 TTTT
1 TTTT
8361103 TTTATTAATA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
36 4 0.11
37 12 0.32
38 19 0.51
39 2 0.05
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.41
Consensus pattern (38 bp):
TTTTAAGAAATTTTCAAAATAATAAAAATAAAATATTA
Found at i:8362462 original size:26 final size:27
Alignment explanation
Indices: 8362403--8362466 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
8362393 TATAATGCTT
* *
8362403 GCTTTAAAATGACTTGGATGAATGACC
1 GCTTAAAAATGACTTGGAAGAATGACC
*
8362430 GCTTAAAAATGATTTGGAAGAAT-ACTC
1 GCTTAAAAATGACTTGGAAGAATGAC-C
8362457 GC-TAAAAATG
1 GCTTAAAAATG
8362467 CTTAATGATG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
26 10 0.30
27 23 0.70
ACGTcount: A:0.39, C:0.12, G:0.20, T:0.28
Consensus pattern (27 bp):
GCTTAAAAATGACTTGGAAGAATGACC
Found at i:8367085 original size:43 final size:43
Alignment explanation
Indices: 8366997--8367134 Score: 172
Period size: 43 Copynumber: 3.2 Consensus size: 43
8366987 AGTCGGGTCA
*
8366997 TCATCATTAGCTTATGCGCACTCCCTACTCGCACATAG-TCCGG
1 TCATCATTAGCTTATGCGCACTCCCTACTCGCACATAGCT-AGG
*
8367040 TCATCATTGGCTTATGCGCACTCCCTACTCGCACATAGCTAGG
1 TCATCATTAGCTTATGCGCACTCCCTACTCGCACATAGCTAGG
* * * * * *
8367083 TCATCATCAGCTCATGTGCACTCCC-ACATCACACATTGCTTGG
1 TCATCATTAGCTTATGCGCACTCCCTAC-TCGCACATAGCTAGG
8367126 TCATCATTA
1 TCATCATTA
8367135 TCACACAACA
Statistics
Matches: 83, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
42 2 0.02
43 80 0.96
44 1 0.01
ACGTcount: A:0.22, C:0.33, G:0.15, T:0.29
Consensus pattern (43 bp):
TCATCATTAGCTTATGCGCACTCCCTACTCGCACATAGCTAGG
Found at i:8374262 original size:19 final size:18
Alignment explanation
Indices: 8374218--8374277 Score: 70
Period size: 19 Copynumber: 3.3 Consensus size: 18
8374208 TTTCTTCTAC
8374218 CTCTTTTCTTCCTT--TCT
1 CTCTTTTCTT-CTTCCTCT
*
8374235 CTATTTTCTTCTTCCTCAT
1 CTCTTTTCTTCTTCCTC-T
8374254 CTCTTTTCTTCTTCCTTCT
1 CTCTTTTCTTCTTCC-TCT
8374273 CTCTT
1 CTCTT
8374278 CCTTTCTCTC
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
16 3 0.08
17 9 0.24
18 2 0.05
19 21 0.57
20 2 0.05
ACGTcount: A:0.03, C:0.35, G:0.00, T:0.62
Consensus pattern (18 bp):
CTCTTTTCTTCTTCCTCT
Found at i:8374286 original size:12 final size:12
Alignment explanation
Indices: 8374258--8374289 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
8374248 CCTCATCTCT
8374258 TTTCT-TCTTCC
1 TTTCTCTCTTCC
8374269 -TTCTCTCTTCC
1 TTTCTCTCTTCC
8374280 TTTCTCTCTT
1 TTTCTCTCTT
8374290 TACTTTCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
10 4 0.21
11 6 0.32
12 9 0.47
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (12 bp):
TTTCTCTCTTCC
Found at i:8378478 original size:170 final size:170
Alignment explanation
Indices: 8378165--8382523 Score: 3165
Period size: 171 Copynumber: 25.6 Consensus size: 170
8378155 ACATTAATCC
* * * * * * *
8378165 AAATGGAAAACATTTTGATTTAAAATCATTTATAAGATTATAGAACTATATAAAGTGAGTAATAA
1 AAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAA
* * * * * * *
8378230 GGCTTTC-AATGGTATGAGTGACTATAAATGGACTTTTCTTCTTAATGTATAGCTTCTGCTTCAC
66 GGCTTTCGAA-GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTGCTTCAT
* * * *
8378294 G-TTTACTGATGCAAACATCCAATTATGATCGATTTTAACTTA
130 GTTTTTC-AATGCAAACATCCAATTATGATTGATTTTAAC-AA
* * * ** * *
8378336 CAATGAAAAAGATTTTGATTTAAAATCGTTTAAAAGGCTAT-AAACCATTTAAAGCAAGTAATAA
1 AAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAA
* * * * * *
8378400 GGCTTTAGATGGCATGAGTGACTATAAATGGACTTTTCTTCTCAATGGAAGGCATATGCTCCATG
66 GGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTGCTTCATG
*
8378465 TTTTTCAATGCAAACATCCAATTATGATTGGTTTTAACTAA
131 TTTTTCAATGCAAACATCCAATTATGATTGATTTTAAC-AA
* * * * * * *
8378506 AAATAAAAAAGACTTTGATTTAAAATCATTTATAAGAATATAGAACCATATAAAACGAATAACAA
1 AAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAA
** * * * * * ** * *
8378571 TACTTTCGATGGCGTGAGTGACTATAAATAGACTTTTCTTCTCAATAGACAGCAT-TCACTTCAA
66 GGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCT-GCTTCAT
* * *
8378635 GTTTCCTT--ATGCAAAAATTCAATTATAATTG-TTTTGAACAA
130 GTTT--TTCAATGCAAACATCCAATTATGATTGATTTT-AACAA
** * * * * * * * *
8378676 AAAACAAAAATTACTTTGATTAAAAATCATTGACAAGGTTATAAAACCATTTAGAGCGAGTGACA
1 AAATGAAAAA-GATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACA
* * * ** * *
8378741 AGTCTTTCGAAGGCATTAGTGATTATAAATAAACTTTTCTTGTCAATAGATGGC-TTTCGCTTCA
65 AGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCT-GCTTCA
* * * * *
8378805 CG-TTTCCTAATACAAACATCCAATTGTGATATG-TTTTAACTAG
129 TGTTTTTC-AATGCAAACATCCAATTATGAT-TGATTTTAAC-AA
** * * ** *
8378848 AAAT-AAAAA-AGGTTGATTTAAAATCATTTATAAGATTATTAATCCACGTAAAACGAGTAACAA
1 AAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAA
** ** * * * * * *
8378911 GGCTTTCGAAGAAATGTTTGACTGT-AGTGGAACTTTACTTGTAAATGGATGGAATAC-GCTTTA
66 GGCTTTCGAAGGCATGAGTGACTATAAATGG-ACTTTTCTTGTCAATGGATGGCAT-CTGCTTCA
** ** * *
8378974 TGTTTCCCAACACAAACATCCAATTATGATCGATGTTAACTAA
129 TGTTTTTCAATGCAAACATCCAATTATGATTGATTTTAAC-AA
* ** *
8379017 AAATGAAAAATATTTCAATTCAAAATCATTTATAAGATTATAAAACCATTTAAAGCCGA-TAACA
1 AAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAG-CGAGTAACA
* * * * * * * *
8379081 AGGCTTTCGATGGCATAAGTGACTTTAAATAGACTTTTATTGACAATGGATGGCAT-TCACTGCA
65 AGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCT-GCTTCA
* *
8379145 TGTTTCT-AGATGCAAACATCCAATTATGATTAATTTTAACCAA
129 TGTTTTTCA-ATGCAAACATCCAATTATGATTGATTTTAA-CAA
* * * *** *
8379188 AAA-CAATGAAGATTTTGATTTAAAGTCATTTATACCTTTATAAAACCATTTAAAGCGAGTAATA
1 AAATGAA-AAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACA
* * * ** * ** *
8379252 AGGCTTTCGAAGACATTATTGACTATAAATGGTGTTTTCTTGCCAATGGATGGTTTCTGATTCAT
65 AGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTGCTTCAT
** *
8379317 GTTTCCCAATGCAAACATCCAATTATGATTGATTTAAACAAA
130 GTTTTTCAATGCAAACATCCAATTATGATTGATTTTAAC-AA
* * * **
8379359 ACAAAGAAAAAAATTTTGATTTAAAATCATTTATAATATTATAAAACCATTTAAAGTAAGTAACA
1 A-AATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACA
* * * **
8379424 AGGCTTTCGAAGGCATAATTGACTATAAATGGA-TTTTTTGTGTCAATGGATGGCATCCACTTCA
65 AGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCT-TGTCAATGGATGGCATCTGCTTCA
** * * *
8379488 TGTTTCCCAATGCAAACATCCACTTATGATATG-GTTCAACCAA
129 TGTTTTTCAATGCAAACATCCAATTATGAT-TGATTTTAA-CAA
* ** * * *
8379531 AAAT-AAAAAGGAATTCAATTGAAAAACATTTATAAGATTATAAAACCATTTAAAGCGAGTAATA
1 AAATGAAAAA-GATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACA
* * * **
8379595 AGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATCGATAGCATCCACTTCAT
65 AGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTGCTTCAT
*
8379660 GTTTCTT-GATGCAAACA-CACAATTATGATTGATTTTAACAAA
130 GTTT-TTCAATGCAAACATC-CAATTATGATTGATTTTAAC-AA
* * *** * * *
8379702 AAAT-AAAAACTATTTTGATTTAAAATCATTTATAAGATTATAGAACCACAAAAAGAGATTAATA
1 AAATGAAAAA-GATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACA
* * * **
8379766 AGGCTTTCGAAGGCATAAGTGACTATAAATGGACTTTT-TTCTCAATGGATGGCTTCCACTTCAT
65 AGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTGCTTCAT
* * * * * * *
8379830 GTTTCTGAATGCAAACATTCAACTCTGATCGATTTTAATGAA
130 GTTTTTCAATGCAAACATCCAATTATGATTGATTTTAA-CAA
* ** * * * * * * **
8379872 GAACAAAAAAGTTTTTGATTTTAAATCATTTAAAAGATTATTAAACTAGTTAAAGAAAGTAACAA
1 AAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAA
* *** * * * *
8379937 GGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAACAAATTGCTTTTGCTTCACG
66 GGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTGCTTCATG
** * * *
8380002 TTTCCCAATGTAAACATCTAA-T-TG--TG-TTTTAACCAG
131 TTTTTCAATGCAAACATCCAATTATGATTGATTTTAA-CAA
* * * * * **
8380038 AAAT-AAAGAAAATTTGGATTCAAAATCATTTGTAAGATTATGAAACCATTTAAAGCGAGTAATT
1 AAATGAAA-AAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACA
* * * * * *
8380102 AGGCTTTTGAATGCATGAGTGACT-TGTAATTGACTTTTCTTGTCAATGGATGGCATCTGGTCCA
65 AGGCTTTCGAAGGCATGAGTGACTAT-AAATGGACTTTTCTTGTCAATGGATGGCATCTGCTTCA
* * * *
8380166 TGTTTCT-AGATACAAACATCCAATTATGATGGATTATAATCAA
129 TGTTTTTCA-ATGCAAACATCCAATTATGATTGATTTTAA-CAA
* * *
8380209 AAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAATCATTTAAAACGAGGAACAA
1 AAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAA
* * * * * ** *
8380274 AGCTTTC-AAGG-ACTAATTGACCATAAATCGACTTTTCTTGTCAATGGATGGCATCCACTTCAC
66 GGCTTTCGAAGGCA-TGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTGCTTCAT
* * * * *
8380337 G-TTTCCTAATACAAACATCTAATGTTATCTACT-ATTTTAACCAA
130 GTTTTTC-AATGCAAACATCCAA--TTAT-GATTGATTTTAA-CAA
* * * * * *
8380381 AAATG-AAAAGATTTTGATTTAAAATAATTTATAAGATAACAAAACCATTTAAAGTGAGCAAGAA
1 AAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAA
* ** * * * *
8380445 GTCTTTC-TTGGAATGAGTGACTATAAATGGACTTTTTTTGTTAATGGATGGCATCCGCTTCATG
66 GGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTGCTTCATG
* * * *
8380509 -TTTCCTGATGCAAACATCAAATT-TCAATATG-TTTTAACCAA
131 TTTTTC-AATGCAAACATCCAATTAT-GAT-TGATTTTAA-CAA
* ** ** * * * * * * **
8380550 AAATGAAAAACA-GATGATAGAAAATCATTTGTAAGGTTAGAGAATCATTTAAAGCGAATAATTA
1 AAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAA
* * * * * *
8380614 GGCTATCAAAGGCATGAGTGACTATAAATGGACTTTTCATGTCTATGGATGGCATTTACTTCATG
66 GGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTGCTTCATG
** * * * **
8380679 TTTACCAATGTAAACATCCATTTATGATCGATTGAAACAA
131 TTTTTCAATGCAAACATCCAATTATGATTGATTTTAACAA
* * * *
8380719 AAATGAAAAAGATTTTTATTTACAATAATTTATAAGATTATAAAACCATTTAAATCGAGTAACAA
1 AAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAA
* * * * *
8380784 TGCTTTCTATGGCAAT-AGTGACTATAAATGGATTTTTCTTGTCAATTGATGGCAT-TCGCTTCA
66 GGCTTTCGAAGGC-ATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCT-GCTTCA
* * * *
8380847 TGTTTCTT-GATGCAAATATCCAATTATGCTTTATTTTAACAA
129 TGTTT-TTCAATGCAAACATCCAATTATGATTGATTTTAACAA
* * * * *
8380889 TAATTAAGAAATATTTTTATTTAAAATTATTTATAAGATTATAAAACCATTTAAAGCGAGTAACA
1 AAATGAA-AAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACA
* * * * * * ** * ** *
8380954 AGGCTTTCG-ATGCAATTAGTTACTCTAAATGGTCTTTTCATCCCTATGGATGGCATCCACTTCC
65 AGGCTTTCGAAGGC-ATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTGCTTCA
* ** *** * * *
8381018 TGTTTCTT-GATGTGAACATCCAATTCCAATCGATTTTTACCA
129 TGTTT-TTCAATGCAAACATCCAATTATGATTGATTTTAACAA
* * * * * * * * *
8381060 AAATAAAAAATATTTTTATTTAAAATCATTGAAAAGATTACAAAATCATTTAAAGTGAGTAACCA
1 AAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAA
** * * * *
8381125 CACTTTCGAAGGTATGAGTGACTATAAATGGACTTTT-TTTTCAATGGATGGCTTCTACTTTACA
66 GGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTGC-TT-CA
** * *
8381189 T-TTCCT-AATGCAAACATCCAATTATAATATG-TTTTAATCAG
129 TGTTTTTCAATGCAAACATCCAATTATGAT-TGATTTTAA-CAA
* * * * *
8381230 AAAT-AAAGAAGATTTGGATTTAAAATCATTTATAAGATTATAAAACTAGTTAAAGTGAGTAA-G
1 AAATGAAA-AAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACA
* * * * * * *
8381293 AGGCCTATCAAAAGCATGAGTAACTATAAATGAACTTTTCTTGTCAATGGATAGCATTTGCTTCA
65 AGG-CTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTGCTTCA
** * * * * *
8381358 CATTTCTCAATGTAAACATCTAATTATGATCGATTTTAAC-C
129 TGTTTTTCAATGCAAACATCCAATTATGATTGATTTTAACAA
* * * * **
8381399 GAA--AAAAAGATTTTGATTTAAAGTCATTTATAAAATGATAAAAATATTTAAAGCGAGTAGA-A
1 AAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTA-ACA
* * * * * * * * **
8381461 AGGCTTT-TAATGGTATGAGTGACTATAAATGGATTTTTCCTATTAATAGATGACATCCACTTCA
65 AGGCTTTCGAA-GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTGCTTCA
*
8381525 TG--TTTCATGATGCAAACATCCAATCATGATTGATTTTAATCAA
129 TGTTTTTCA--ATGCAAACATCCAATTATGATTGATTTTAA-CAA
* * * * *
8381568 AAA-CAAAATAAATTTTGATTTAAAATTATTTATTAGATTATAAAACCATTTAAAGCAAGTAACA
1 AAATGAAAA-AGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACA
* * * * * * * * *
8381632 AAGCTATC-AATAGCATGAGTGACTATAAATGTACTGTTCTTATCAATAGATGGCTTGC-GCTTT
65 AGGCTTTCGAA-GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCAT-CTGCTTC
* * * ** *
8381695 ATG-TTTCCTGATGCAAACATCCAACTATGATCCATTTTAAGAA
128 ATGTTTTTC-AATGCAAACATCCAATTATGATTGATTTTAACAA
* * * **
8381738 GAAATGAATAAA-ATTATTGATTTAAATTCATTTATAAGATTATTAAACCACTTAAAGTTAGTAA
1 -AAATGAA-AAAGATT-TTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAA
* * * * * * * * **
8381802 CAAGGCTTTCGATGGTATAAGTAACTACAAATGAACTTTTCTTCTCATTGGATGAAAT-TCGCTT
63 CAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCT-GCTT
* * *
8381866 CACG--TTTCAGATGCAAACATCGAATTAT-TTTGAATTTTAACCAA
127 CATGTTTTTCA-ATGCAAACATCCAATTATGATTG-ATTTTAA-CAA
* * ** **
8381910 AAATGAAAAATATTTTGATTTAAGATCATTGGTAAGATTATAAAACCATTTAAAGATAGTAACAA
1 AAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAA
* ** * *
8381975 GGCTTTTGAAGGCAAAAATGACTATAAATGGAC-TTTCTCGTCAATGGATGGCTATC-GCTTCAT
66 GGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC-ATCTGCTTCAT
* * *
8382038 G-TTTCCTGATGCAAACATCCAATTATGATCT--TCTTTAACTAG
130 GTTTTTC-AATGCAAACATCCAATTATGAT-TGAT-TTTAAC-AA
* * * * * * *
8382080 AAAT-AAAGAAAATTTGGATTCAAAATCATTTATAAGATTATTAAACCAATTACAGTGAGTAACA
1 AAATGAAA-AAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACA
* ** ** *
8382144 AAGCTTTTAAAGGCATGAGTGACTATAAATGG-CTTTTCTCATTAATGGATGGCAT-TCGCTTCA
65 AGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCT-GCTTCA
* * **
8382207 TGTTTCTCAATGCAAACATCCAACTATGATCAATTTTAACCAA
129 TGTTTTTCAATGCAAACATCCAATTATGATTGATTTTAA-CAA
* * * * * *
8382250 AAATGAAAAAAAATTATGATTTAAAATCATTCATTAGATTATAAAACCATTTAAAGTGAGTAAGA
1 AAATG-AAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACA
* * * * * * * * * *
8382315 AGGTTTTCGATGGCATGAGTGATTATAAATGGACTTTTGTTATTAATAGATGGCATCCGTTTCAA
65 AGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTGCTTCAT
** *
8382380 GTTTCCCAATGCAAACATCCAATTAT-ATTTGATTTTAATAAA
130 GTTTTTCAATGCAAACATCCAATTATGA-TTGATTTTAA-CAA
* * *
8382422 AAAT-AAACAATATTTTGATTTAAAATCATTTGTAAGATTATAAAACCATTTAAAGCAAGTAACA
1 AAATGAAA-AAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACA
* * *
8382486 AGGC-TTCAAAAGGCATGACTAACTATAAATGGACTTTT
65 AGGCTTTC-GAAGGCATGAGTGACTATAAATGGACTTTT
8382524 ATAAATGGAC
Statistics
Matches: 3304, Mismatches: 747, Indels: 274
0.76 0.17 0.06
Matches are distributed among these distances:
165 9 0.00
166 120 0.04
167 116 0.04
168 17 0.01
169 272 0.08
170 978 0.30
171 1438 0.44
172 343 0.10
173 11 0.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (170 bp):
AAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAA
GGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTGCTTCATG
TTTTTCAATGCAAACATCCAATTATGATTGATTTTAACAA
Found at i:8381275 original size:511 final size:505
Alignment explanation
Indices: 8378171--8382491 Score: 3067
Period size: 511 Copynumber: 8.5 Consensus size: 505
8378161 ATCCAAATGG
* * * * *
8378171 AAAACATTTTGATTTAAAATCATTTATAAGATTATAGAACTATATAAAGTGAGTAATAAGGCTTT
1 AAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAA-TGAGTAACAAGGCTTT
* * * * *
8378236 C-AATGG-TATGAGTGACTATAAATGGACTTTTCTTCTTAATGTATAGC-TTCTGCTTCACGTTT
65 CGAA-GGCAATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATTC-GCTTCACGTTT
* * * * *
8378298 ACTGATGCAAACATCCAATTATGATCGATTTTAACTTA-CAATGAAAAAGATTTTGATTTAAAAT
128 CCTAATGCAAACATCCAATTATGATCTATTTTAAC-AAGAAAT-AAAAAGATTTTGATTTAAAAT
* * ** * *
8378362 CGTTTAAAAGGCTAT-AAACCATTTAAAGCAAGTAATAAGGCTTTAGATGGC-ATGAGTGACTAT
191 CATTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTCGAT-GCAATGAGTGACTAT
* ** * *
8378425 AAATGGACTTTTCTTCTCAATGGAAGGCATATGCTCCATGTTT-TTCAATGCAAACATCCAATT-
255 AAATGGACTTTTCTTCTCAATGGATGGCATCCGCTTCATGTTTCCT-AATGCAAACATCCAATTC
* * * * * *
8378488 ATGATTGGTTTTAACTAAAAATAAAAAAGACTTTGATTTAAAATCATTTATAAGAATATAGAACC
319 A--A-TGATTTTAAC-CAAAATAAAAAA-ATTTTGATTCAAAATCATTTATAAGATTATAAAACC
* * * * * * * * *
8378553 ATATAAAACGAATAACAATACTTTCGATGGCGTGAGTGACTATAAATAGACTTTTCTTCTCAATA
379 ATTTAAAGCGAGTAACAAGACTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATG
** * * * * * *
8378618 GACAGCATTCACTTCA-AGTTTCCTTATGCAAAAATTCAATTATAATTGTTTTGAACAAAAAACA
444 GATGGCATTCACTTTACA-TTTCCTAATGCAAACATCCAATTATGATTGTTTT-AAC-AAAAATA
* * * * * * ** * *
8378682 AAAATTACTTTGATTAAAAATCATTGACAAGGTTATAAAACCATTTAGAGCGAGTGACAAGTCTT
1 AAAA-GATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTA-AATGAGTAACAAGGCTT
* * ** * *
8378747 TCGAAGGC-ATTAGTGATTATAAATAAACTTTTCTTGTCAATAGATGGCTTTCGCTTCACGTTTC
64 TCGAAGGCAATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATTCGCTTCACGTTTC
* * * * * **
8378811 CTAATACAAACATCCAATTGTGATATGTTTTAACTAGAAATAAAAA-AGGTTGATTTAAAATCAT
129 CTAATGCAAACATCCAATTATGATCTATTTTAACAAGAAATAAAAAGATTTTGATTTAAAATCAT
* * ** * * * * ** * *
8378875 TTATAAGATTATTAATCCACGTAAAACGAGTAACAAGGCTTTCGAAGAAATGTTTGACTGT-AGT
194 TTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTCGATGCAATGAGTGACTATAAAT
* * * * * * * **
8378939 GGAACTTTACTTGTAAATGGATGGAATACGCTTTATGTTTCCCAACACAAACATCCAATT-ATGA
259 GG-ACTTTTCTTCTCAATGGATGGCATCCGCTTCATGTTTCCTAATGCAAACATCCAATTCA--A
* * * **
8379003 TCGATGTTAACTAAAAATGAAAAATATTTCAATTCAAAATCATTTATAAGATTATAAAACCATTT
321 T-GATTTTAAC-CAAAAT-AAAAAAATTTTGATTCAAAATCATTTATAAGATTATAAAACCATTT
* * * * * * *
8379068 AAAGCCGA-TAACAAGGCTTTCGATGGCATAAGTGACTTTAAATAGACTTTTATTGACAATGGAT
383 AAAG-CGAGTAACAAGACTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGAT
* * * *
8379132 GGCATTCAC--TGCATGTTTCTAGATGCAAACATCCAATTATGATTAATTTTAACCAAAAACA
447 GGCATTCACTTTACAT-TTCCTA-ATGCAAACATCCAATTATGATT-GTTTTAA-CAAAAATA
* * *** * *
8379193 ATGAAGATTTTGATTTAAAGTCATTTATACCTTTATAAAACCATTTAAAGCGAGTAATAAGGCTT
1 A-AAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAA-TGAGTAACAAGGCTT
* * * ** * * * *
8379258 TCGAAGAC-ATTATTGACTATAAATGGTGTTTTCTTGCCAATGGATGG-TTTCTGATTCATGTTT
64 TCGAAGGCAATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATTC-GCTTCACGTTT
* * * * *
8379321 CCCAATGCAAACATCCAATTATGAT-TGATTTAAACAAAACAAAGAAAAAAATTTTGATTTAAAA
128 CCTAATGCAAACATCCAATTATGATCT-ATTTTAAC--AAGAAATAAAAAGATTTTGATTTAAAA
* * * * *
8379385 TCATTTATAATATTATAAAACCATTTAAAGTAAGTAACAAGGCTTTCGAAGGC-ATAATTGACTA
190 TCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTCG-ATGCAATGAGTGACTA
* * * * *
8379449 TAAATGGA-TTTTTTGTGTCAATGGATGGCATCCACTTCATGTTTCCCAATGCAAACATCCACTT
254 TAAATGGACTTTTCT-TCTCAATGGATGGCATCCGCTTCATGTTTCCTAATGCAAACATCCAATT
** * *
8379513 --ATGATATGGTTCAACCAAAAATAAAAAGGAA-TTCAATTGAAAAACATTTATAAGATTATAAA
318 CAATGAT-T--TT-AACC-AAAATAAAAA--AATTTTGATTCAAAATCATTTATAAGATTATAAA
* * *
8379575 ACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCA
376 ACCATTTAAAGCGAGTAACAAGACTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * * ** * *
8379640 ATCGATAGCATCCACTTCATGTTTCTTGATGCAAACA-CACAATTATGATTGATTTTAACAAAAA
441 ATGGATGGCATTCACTTTACATTTCCTAATGCAAACATC-CAATTATGATTG-TTTTAAC-AAAA
8379704 ATA
503 ATA
* * ** * *
8379707 AAAACTATTTTGATTTAAAATCATTTATAAGATTATAGAACCA-CAAAAAGAGATTAATAAGGCT
1 AAAA-GATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAATGAG--TAACAAGGCT
* * * *
8379771 TTCGAAGGC-ATAAGTGACTATAAATGGACTTTT-TTCTCAATGGATGGC-TTCCACTTCATGTT
63 TTCGAAGGCAATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATT-CGCTTCACGTT
* * * * * * *
8379833 T-CTGAATGCAAACATTCAACTCTGATCGATTTTAATGAAGAACA-AAAAAGTTTTTGATTTTAA
127 TCCT-AATGCAAACATCCAATTATGATCTATTTTAA-CAAGAA-ATAAAAAGATTTTGATTTAAA
* * * * * * *
8379896 ATCATTTAAAAGATTATTAAACTAGTTAAAGAAAGTAACAAGGCTTTTGAAGGC-ATGAGTGACT
189 ATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTCG-ATGCAATGAGTGACT
* *** * * ** * * * *
8379960 ATAAATGGACTTTTCTTGTCAACAAATTGCTTTTGCTTCACGTTTCCCAATGTAAACATCTAATT
253 ATAAATGGACTTTTCTTCTCAATGGATGGCATCCGCTTCATGTTTCCTAATGCAAACATCCAATT
* * * *
8380025 --GTG-TTTTAACCAGAAATAAAGAAAATTTGGATTCAAAATCATTTGTAAGATTATGAAACCAT
318 CAATGATTTTAACCA-AAATAAA-AAAATTTTGATTCAAAATCATTTATAAGATTATAAAACCAT
** * * * * *
8380087 TTAAAGCGAGTAATTAGGCTTTTGAATGCATGAGTGACT-TGTAATTGACTTTTCTTGTCAATGG
381 TTAAAGCGAGTAACAAGACTTTCGAAGGCATGAGTGACTAT-AAATGGACTTTTCTTGTCAATGG
* * * * * *
8380151 ATGGCA-T--CTGGTCCATGTTTCTAGATACAAACATCCAATTATGATGGATTATAATCAAAAAT
445 ATGGCATTCACT-TTACAT-TTCCTA-ATGCAAACATCCAATTATGATTG-TTTTAA-CAAAAAT
8380213 GA
505 -A
* * * *
8380215 AAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAATCATTTAAAACGAGGAACAAAGCTTT
1 AAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTT-AAATGAGTAACAAGGCTTT
* * * * * * *
8380280 C-AAGG-ACTAATTGACCATAAATCGACTTTTCTTGTCAATGGATGGCATCCACTTCACGTTTCC
65 CGAAGGCAATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATTCGCTTCACGTTTCC
* * * *
8380343 TAATACAAACATCTAATGTTAT-CTACTATTTTAACCAA-AAATGAAAAGATTTTGATTTAAAAT
130 TAATGCAAACATCCAA--TTATGAT-CTATTTTAA-CAAGAAATAAAAAGATTTTGATTTAAAAT
* * * ** * * * * *
8380406 AATTTATAAGATAACAAAACCATTTAAAGTGAGCAAGAAGTCTTTC-TTGGAATGAGTGACTATA
191 CATTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTCGATGCAATGAGTGACTATA
* * * * *
8380470 AATGGACTTTTTTTGTTAATGGATGGCATCCGCTTCATGTTTCCTGATGCAAACATCAAATTTCA
256 AATGGACTTTTCTTCTCAATGGATGGCATCCGCTTCATGTTTCCTAATGCAAACATCCAA-TTCA
* ** ** * * * * *
8380535 AT-ATGTTTTAACCAAAAATGAAAAACA-GATGATAGAAAATCATTTGTAAGGTTAGAGAATCAT
320 ATGA--TTTTAACC-AAAAT-AAAAAAATTTTGATTCAAAATCATTTATAAGATTATAAAACCAT
* ** * * * * *
8380598 TTAAAGCGAATAATTAGGCTATCAAAGGCATGAGTGACTATAAATGGACTTTTCATGTCTATGGA
381 TTAAAGCGAGTAACAAGACTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGA
* * ** * * * **
8380663 TGGCATTTACTTCATGTTTACC-AATGTAAACATCCATTTATGATCGATTGAAACAAAAATGA
446 TGGCATTCACTTTACATTT-CCTAATGCAAACATCCAATTATGATTG-TTTTAACAAAAAT-A
* * * *
8380725 AAAAGATTTTTATTTACAATAATTTATAAGATTATAAAACCATTTAAATCGAGTAACAATGCTTT
1 AAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAT-GAGTAACAAGGCTTT
* * * * * *
8380790 CTATGGCAAT-AGTGACTATAAATGGATTTTTCTTGTCAATTGATGGCATTCGCTTCATGTTTCT
65 CGAAGGCAATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATTCGCTTCACGTTTCC
* * * * * * * * *
8380854 TGATGCAAATATCCAATTATGCTTTATTTTAACAATAATTAAGAAATATTTTTATTTAAAATTAT
130 TAATGCAAACATCCAATTATGATCTATTTTAACAAGAAATAA-AAAGATTTTGATTTAAAATCAT
* * * *
8380919 TTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGATGCAATTAGTTACTCTAAAT
194 TTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTCGATGCAATGAGTGACTATAAAT
* * * * * * * * **
8380984 GGTCTTTTCATCCCTATGGATGGCATCCACTTCCTGTTTCTTGATGTGAACATCCAATTCCAATC
259 GGACTTTTCTTCTCAATGGATGGCATCCGCTTCATGTTTCCTAATGCAAACATCCAATT-CAAT-
* * * * * * *
8381049 GATTTTTACCAAAATAAAAAATATTTTTATTTAAAATCATTGAAAAGATTACAAAATCATTTAAA
322 GATTTTAACCAAAATAAAAAA-ATTTTGATTCAAAATCATTTATAAGATTATAAAACCATTTAAA
* * * * *
8381114 GTGAGTAACCACACTTTCGAAGGTATGAGTGACTATAAATGGACTTTT-TTTTCAATGGATGGC-
386 GCGAGTAACAAGACTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCA
* *
8381177 TTCTACTTTACATTTCCTAATGCAAACATCCAATTATAATATGTTTTAATCAGAAATA
451 TTC-ACTTTACATTTCCTAATGCAAACATCCAATTATGAT-TGTTTTAA-CAAAAATA
* * * *
8381235 AAGAAGATTTGGATTTAAAATCATTTATAAGATTATAAAACTAGTTAAAGTGAGTAA-GAGGCCT
1 AA-AAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAA-TGAGTAACAAGG-CT
* * * * * * * *
8381299 ATCAAAAGC-ATGAGTAACTATAAATGAACTTTTCTTGTCAATGGATAGCATTTGCTTCACATTT
63 TTCGAAGGCAATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATTCGCTTCACGTTT
* * * * *
8381363 -CTCAATGTAAACATCTAATTATGATCGATTTTAAC-CG-AA-AAAAAGATTTTGATTTAAAGTC
128 CCT-AATGCAAACATCCAATTATGATCTATTTTAACAAGAAATAAAAAGATTTTGATTTAAAATC
* * ** * ** **
8381424 ATTTATAAAATGATAAAAATATTTAAAGCGAGTAGA-AAGGCTTTTAATGGTATGAGTGACTATA
192 ATTTATAAGATTATAAAACCATTTAAAGCAAGTA-ACAAGGCTTTCGATGCAATGAGTGACTATA
* * * * * * * * *
8381488 AATGGATTTTTCCTATTAATAGATGACATCCACTTCATGTTTCATGATGCAAACATCCAA-TCAT
256 AATGGACTTTTCTTCTCAATGGATGGCATCCGCTTCATGTTTCCTAATGCAAACATCCAATTCA-
* * * * *
8381552 GATTGATTTTAATCAAAAACAAAATAAATTTTGATTTAAAATTATTTATTAGATTATAAAACCAT
320 -A-TGATTTTAA-CCAAAATAAAA-AAATTTTGATTCAAAATCATTTATAAGATTATAAAACCAT
* * * * * * *
8381617 TTAAAGCAAGTAACAA-AGCTATC-AATAGCATGAGTGACTATAAATGTACTGTTCTTATCAATA
381 TTAAAGCGAGTAACAAGA-CTTTCGAA-GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATG
* ** * * ** *
8381680 GATGGC-TTGCGCTTTATGTTTCCTGATGCAAACATCCAACTATGATCCATTTTAAGAAGAAATG
444 GATGGCATT-CACTTTACATTTCCTAATGCAAACATCCAATTATGAT-TGTTTTAACAA-AAAT-
8381744 A
505 A
* * * *
8381745 ATAAA-ATTATTGATTTAAATTCATTTATAAGATTATTAAACCACTTAAAGTTAGTAACAAGGCT
1 A-AAAGATT-TTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAA-TGAGTAACAAGGCT
* * * * * * * * **
8381809 TTCGATGG-TATAAGTAACTACAAATGAACTTTTCTTCTCATTGGATGAAATTCGCTTCACGTTT
63 TTCGAAGGCAATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATTCGCTTCACGTTT
* ** ** * *
8381873 -C-AGATGCAAACATCGAATTATTTTGAATTTTAACCAA-AAATGAAAAATATTTTGATTTAAGA
128 CCTA-ATGCAAACATCCAATTATGATCTATTTTAA-CAAGAAAT-AAAAAGATTTTGATTTAAAA
** * * * *
8381935 TCATTGGTAAGATTATAAAACCATTTAAAG-ATAGTAACAAGGCTTTTGAAGGCAA-AAATGACT
190 TCATTTATAAGATTATAAAACCATTTAAAGCA-AGTAACAAGGCTTTCG-ATGCAATGAGTGACT
*
8381998 ATAAATGGAC-TTTC-TCGTCAATGGATGGCTAT-CGCTTCATGTTTCCTGATGCAAACATCCAA
253 ATAAATGGACTTTTCTTC-TCAATGGATGGC-ATCCGCTTCATGTTTCCTAATGCAAACATCCAA
* * *
8382060 TT--ATGATCTTCTTTAACTAGAAATAAAGAAAATTTGGATTCAAAATCATTTATAAGATTATTA
316 TTCAATGA---T-TTTAACCA-AAATAAA-AAAATTTTGATTCAAAATCATTTATAAGATTATAA
* * * ** **
8382123 AACCAATTACAGTGAGTAACAA-AGCTTTTAAAGGCATGAGTGACTATAAATGG-CTTTTCTCAT
375 AACCATTTAAAGCGAGTAACAAGA-CTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGT
* * * * **
8382186 TAATGGATGGCATTCGC-TT-CATGTTTCTCAATGCAAACATCCAACTATGATCAATTTTAACCA
439 CAATGGATGGCATTCACTTTACAT-TTCCT-AATGCAAACATCCAATTATGAT-TGTTTTAA-CA
8382249 AAAATGAA
500 AAAAT--A
* * * * * *
8382257 AAAAAATTATGATTTAAAATCATTCATTAGATTATAAAACCATTTAAAGTGAGTAAGAAGGTTTT
1 AAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAA-TGAGTAACAAGGCTTT
* * * * * * * * *
8382322 CGATGGC-ATGAGTGATTATAAATGGACTTTTGTTATTAATAGATGGCATCCGTTTCAAGTTTCC
65 CGAAGGCAATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATTCGCTTCACGTTTCC
* * * * *
8382386 CAATGCAAACATCCAATTAT-ATTTGATTTTAATAAAAAATAAACAATATTTTGATTTAAAATCA
130 TAATGCAAACATCCAATTATGATCT-ATTTTAACAAGAAATAAA-AAGATTTTGATTTAAAATCA
*
8382450 TTTGTAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTT
193 TTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTT
8382492 CAAAAGGCAT
Statistics
Matches: 3025, Mismatches: 631, Indels: 307
0.76 0.16 0.08
Matches are distributed among these distances:
504 2 0.00
505 3 0.00
506 33 0.01
507 399 0.13
508 162 0.05
509 134 0.04
510 334 0.11
511 953 0.32
512 506 0.17
513 174 0.06
514 314 0.10
515 10 0.00
516 1 0.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (505 bp):
AAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAATGAGTAACAAGGCTTTC
GAAGGCAATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATTCGCTTCACGTTTCCT
AATGCAAACATCCAATTATGATCTATTTTAACAAGAAATAAAAAGATTTTGATTTAAAATCATTT
ATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTCGATGCAATGAGTGACTATAAATGG
ACTTTTCTTCTCAATGGATGGCATCCGCTTCATGTTTCCTAATGCAAACATCCAATTCAATGATT
TTAACCAAAATAAAAAAATTTTGATTCAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAG
TAACAAGACTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATTCAC
TTTACATTTCCTAATGCAAACATCCAATTATGATTGTTTTAACAAAAATA
Found at i:8382294 original size:20 final size:20
Alignment explanation
Indices: 8382262--8382300 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
8382252 ATGAAAAAAA
*
8382262 ATTATGATTTAAAATCATTC
1 ATTATGATTTAAAACCATTC
8382282 ATTA-GATTATAAAACCATT
1 ATTATGATT-TAAAACCATT
8382301 TAAAGTGAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.44, C:0.10, G:0.05, T:0.41
Consensus pattern (20 bp):
ATTATGATTTAAAACCATTC
Found at i:8384487 original size:11 final size:11
Alignment explanation
Indices: 8384471--8384501 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
8384461 AATTTTAGAA
8384471 TAAAATAATAG
1 TAAAATAATAG
*
8384482 TAAAATAATAT
1 TAAAATAATAG
8384493 TAAAATAAT
1 TAAAATAAT
8384502 TTTGATGCAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (11 bp):
TAAAATAATAG
Found at i:8384615 original size:14 final size:15
Alignment explanation
Indices: 8384596--8384629 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
8384586 TATTAAAATA
8384596 ATATTTTATT-CATT
1 ATATTTTATTACATT
*
8384610 ATATTTTATTATATT
1 ATATTTTATTACATT
8384625 ATATT
1 ATATT
8384630 ATTTAAATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (15 bp):
ATATTTTATTACATT
Found at i:8385851 original size:55 final size:55
Alignment explanation
Indices: 8385764--8386180 Score: 588
Period size: 55 Copynumber: 7.6 Consensus size: 55
8385754 AACCATCGGT
* * *
8385764 TCATCAGCTCATGTGCACTCCCACACTACACATAGCTGGAATCATCATCCACCAG
1 TCATCAGCTCATGTGCACTCCCACACTGCACATAGCTAGAATCATCAACCACCAG
* * * *
8385819 TCATCAGCTCATGTTCACTCCCACACCGCACATAGTTAGAATCAGCAACCACCAG
1 TCATCAGCTCATGTGCACTCCCACACTGCACATAGCTAGAATCATCAACCACCAG
* * *
8385874 TCATCAGCTCATGTGCACTCCCACACTGCACATAGTTGGAATCATCAACCACCGG
1 TCATCAGCTCATGTGCACTCCCACACTGCACATAGCTAGAATCATCAACCACCAG
* * * *
8385929 TCATTAGCTCATGTGCATTCCCACACTGCACATAGCTAGAATCATCATCCACCAC
1 TCATCAGCTCATGTGCACTCCCACACTGCACATAGCTAGAATCATCAACCACCAG
*
8385984 TCATCAGCTCATGTGCACTCCCACACTGCACATAGTTAGAATCATCAACCACCAG
1 TCATCAGCTCATGTGCACTCCCACACTGCACATAGCTAGAATCATCAACCACCAG
* *
8386039 TCATCAGCTCATGTGCACTCCCACACCGCACATAGCTGGAATCATCAACCA-CAGG
1 TCATCAGCTCATGTGCACTCCCACACTGCACATAGCTAGAATCATCAACCACCA-G
* * * *
8386094 TCATTAGCTCATGTGCATTCCCACACAGCACATAGCTAGAATCATC-ACCATC-G
1 TCATCAGCTCATGTGCACTCCCACACTGCACATAGCTAGAATCATCAACCACCAG
* *
8386147 ATCATCAGCTCATGGGCACTCCCACACTGTACAT
1 -TCATCAGCTCATGTGCACTCCCACACTGCACAT
8386181 GCACAATTAT
Statistics
Matches: 323, Mismatches: 36, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
53 1 0.00
54 34 0.11
55 288 0.89
ACGTcount: A:0.29, C:0.35, G:0.14, T:0.22
Consensus pattern (55 bp):
TCATCAGCTCATGTGCACTCCCACACTGCACATAGCTAGAATCATCAACCACCAG
Found at i:8386041 original size:165 final size:164
Alignment explanation
Indices: 8385754--8386180 Score: 676
Period size: 165 Copynumber: 2.6 Consensus size: 164
8385744 ACATGTATAT
* * * * *
8385754 AACCATCGGTTCATCAGCTCATGTGCACTCCCACACTACACATAGCTGGAATCATCATCCACCAG
1 AACCACCGG-TCATTAGCTCATGTGCATTCCCACACTGCACATAGCTAGAATCATCATCCACCA-
* *
8385819 TCATCAGCTCATGTTCACTCCCACACCGCACATAGTTAGAATCAGCAACCACCAGTCATCAGCTC
64 TCATCAGCTCATGTGCACTCCCACACTGCACATAGTTAGAATCAGCAACCACCAGTCATCAGCTC
* *
8385884 ATGTGCACTCCCACACTGCACATAGTTGGAATCATC
129 ATGTGCACTCCCACACCGCACATAGCTGGAATCATC
8385920 AACCACCGGTCATTAGCTCATGTGCATTCCCACACTGCACATAGCTAGAATCATCATCCACCACT
1 AACCACCGGTCATTAGCTCATGTGCATTCCCACACTGCACATAGCTAGAATCATCATCCACCA-T
*
8385985 CATCAGCTCATGTGCACTCCCACACTGCACATAGTTAGAATCATCAACCACCAGTCATCAGCTCA
65 CATCAGCTCATGTGCACTCCCACACTGCACATAGTTAGAATCAGCAACCACCAGTCATCAGCTCA
8386050 TGTGCACTCCCACACCGCACATAGCTGGAATCATC
130 TGTGCACTCCCACACCGCACATAGCTGGAATCATC
* * *
8386085 AACCACAGGTCATTAGCTCATGTGCATTCCCACACAGCACATAGCTAGAATCATCA-CCATCGAT
1 AACCACCGGTCATTAGCTCATGTGCATTCCCACACTGCACATAGCTAGAATCATCATCCA-CCAT
* *
8386149 CATCAGCTCATGGGCACTCCCACACTGTACAT
65 CATCAGCTCATGTGCACTCCCACACTGCACAT
8386181 GCACAATTAT
Statistics
Matches: 244, Mismatches: 16, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
164 34 0.14
165 202 0.83
166 8 0.03
ACGTcount: A:0.29, C:0.35, G:0.14, T:0.22
Consensus pattern (164 bp):
AACCACCGGTCATTAGCTCATGTGCATTCCCACACTGCACATAGCTAGAATCATCATCCACCATC
ATCAGCTCATGTGCACTCCCACACTGCACATAGTTAGAATCAGCAACCACCAGTCATCAGCTCAT
GTGCACTCCCACACCGCACATAGCTGGAATCATC
Found at i:8390916 original size:2 final size:2
Alignment explanation
Indices: 8390899--8390931 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
8390889 TTATCAATAC
*
8390899 AT AT -T AT AT AT CT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8390932 CAACATAACA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:8391739 original size:20 final size:20
Alignment explanation
Indices: 8391714--8391756 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
8391704 AAGAAGAAGA
**
8391714 AGAAGAAGCTGTTGGAAATT
1 AGAAGAAGCTACTGGAAATT
8391734 AGAAGAAGCTACTGGAAATT
1 AGAAGAAGCTACTGGAAATT
8391754 AGA
1 AGA
8391757 TATTTGTGCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.44, C:0.07, G:0.28, T:0.21
Consensus pattern (20 bp):
AGAAGAAGCTACTGGAAATT
Found at i:8405765 original size:55 final size:56
Alignment explanation
Indices: 8405680--8405790 Score: 179
Period size: 55 Copynumber: 2.0 Consensus size: 56
8405670 ACATGTATAT
8405680 AACCACCGACTCATCAACTCATGTACAGTCCCACACAGCACATAGCTAGAATCATC
1 AACCACCGACTCATCAACTCATGTACAGTCCCACACAGCACATAGCTAGAATCATC
* ** *
8405736 AACCACCGA-TCATCAACTCATGTGCAGTCCCACATTGCACATAGCTGGAATCATC
1 AACCACCGACTCATCAACTCATGTACAGTCCCACACAGCACATAGCTAGAATCATC
8405791 TGTCATGATG
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
55 42 0.82
56 9 0.18
ACGTcount: A:0.33, C:0.34, G:0.13, T:0.20
Consensus pattern (56 bp):
AACCACCGACTCATCAACTCATGTACAGTCCCACACAGCACATAGCTAGAATCATC
Found at i:8407682 original size:94 final size:94
Alignment explanation
Indices: 8407521--8407710 Score: 308
Period size: 94 Copynumber: 2.0 Consensus size: 94
8407511 ACATGTTTTA
**
8407521 AAGAGTGAATCAAGAGCATTTGAAGAAATATCAAGTGGGTTTCAAGGCATTCTCGAGAAGAAAGG
1 AAGAGTGAATCAAGAGCATTTGAAGAAATATCAAGTGGGTTTCAAGGCATTCTAAAGAAGAAAGG
* * *
8407586 AGAAATCAAGTGAGGGCTCAATTTTGTAG
66 AGAAATCAAATGAGGGCTCAACTTTATAG
* * *
8407615 AAGAGTGATTCAAGGGCATTTGAAGAAATATCAAGTGGGTTTCAAGGCATTCTAAAGAAGAATGG
1 AAGAGTGAATCAAGAGCATTTGAAGAAATATCAAGTGGGTTTCAAGGCATTCTAAAGAAGAAAGG
8407680 AGAAATCAAATGAGGGCTCAACTTTATAG
66 AGAAATCAAATGAGGGCTCAACTTTATAG
8407709 AA
1 AA
8407711 ATCCAAGGAG
Statistics
Matches: 88, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
94 88 1.00
ACGTcount: A:0.39, C:0.11, G:0.26, T:0.24
Consensus pattern (94 bp):
AAGAGTGAATCAAGAGCATTTGAAGAAATATCAAGTGGGTTTCAAGGCATTCTAAAGAAGAAAGG
AGAAATCAAATGAGGGCTCAACTTTATAG
Found at i:8416153 original size:43 final size:43
Alignment explanation
Indices: 8416106--8416214 Score: 123
Period size: 43 Copynumber: 2.5 Consensus size: 43
8416096 CACCAGCTCT
**
8416106 TGCGCACTCCCTACTCGCACAT-GGCTGGGTCATCACTAAG-TTA
1 TGCGCACTCCCTACTCGCACATAATC-GGGTCATCA-TAAGCTTA
* * **
8416149 TGCGCACTCTCTACTAGCACATAATCGGGTCATCATCGGCTTA
1 TGCGCACTCCCTACTCGCACATAATCGGGTCATCATAAGCTTA
*
8416192 TGCGCATTCCCTACTCGCACATA
1 TGCGCACTCCCTACTCGCACATA
8416215 GCCGAATCAA
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
42 2 0.04
43 52 0.95
44 1 0.02
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (43 bp):
TGCGCACTCCCTACTCGCACATAATCGGGTCATCATAAGCTTA
Found at i:8420017 original size:20 final size:20
Alignment explanation
Indices: 8419992--8420029 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8419982 GGTTGGTTGG
* *
8419992 AAGAAAGGAGAAAGGAAAGA
1 AAGAAACGAAAAAGGAAAGA
8420012 AAGAAACGAAAAAGGAAA
1 AAGAAACGAAAAAGGAAA
8420030 AGAAGGAGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.68, C:0.03, G:0.29, T:0.00
Consensus pattern (20 bp):
AAGAAACGAAAAAGGAAAGA
Found at i:8420065 original size:22 final size:20
Alignment explanation
Indices: 8419991--8420068 Score: 61
Period size: 22 Copynumber: 3.7 Consensus size: 20
8419981 AGGTTGGTTG
* *
8419991 GAAGAAAGGAGAAAG-GAAA
1 GAAGAAAGAAGAAAGAAAAA
*
8420010 GAAAGAAACGAA-AAAGGAAAA
1 G-AAGAAA-GAAGAAAGAAAAA
8420031 GAAGGAGAAGAAGAAAGAAAAA
1 GAA-GA-AAGAAGAAAGAAAAA
8420053 GAGAGAAATGAAGAAA
1 GA-AGAAA-GAAGAAA
8420069 AGCTTGGTTT
Statistics
Matches: 48, Mismatches: 3, Indels: 13
0.75 0.05 0.20
Matches are distributed among these distances:
19 1 0.02
20 12 0.25
21 13 0.27
22 21 0.44
23 1 0.02
ACGTcount: A:0.67, C:0.01, G:0.31, T:0.01
Consensus pattern (20 bp):
GAAGAAAGAAGAAAGAAAAA
Found at i:8420660 original size:2 final size:2
Alignment explanation
Indices: 8420655--8420711 Score: 71
Period size: 2 Copynumber: 28.0 Consensus size: 2
8420645 TATCATGTTG
* *
8420655 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8420697 AT GAT -T AT AT GAT AT
1 AT -AT AT AT AT -AT AT
8420712 GTATTGATAT
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
1 1 0.02
2 43 0.90
3 4 0.08
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (2 bp):
AT
Done.