Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26303135
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.30
Warning! 1968672 characters in sequence are not A, C, G, or T
File 25 of 66
Found at i:8422068 original size:52 final size:52
Alignment explanation
Indices: 8421913--8422068 Score: 240
Period size: 52 Copynumber: 3.0 Consensus size: 52
8421903 CTCCCACCTC
* * *
8421913 GCACATGGCATATATCATCAGTGTGGGCACTCACATAGCACACCACTATCAC
1 GCACATGGCATATATCATCAGTGTGTGCACTCACACAGCACACCACTATCAT
* * * * *
8421965 GCATATGACATATATCATCAGTTTGTGCACTCACACAGTACACCATTATCAT
1 GCACATGGCATATATCATCAGTGTGTGCACTCACACAGCACACCACTATCAT
8422017 GCACATGGCATATATCATCAGTGTGTGCACTCACACAGCACACCACTATCAT
1 GCACATGGCATATATCATCAGTGTGTGCACTCACACAGCACACCACTATCAT
8422069 CGTCATGTGC
Statistics
Matches: 91, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 91 1.00
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (52 bp):
GCACATGGCATATATCATCAGTGTGTGCACTCACACAGCACACCACTATCAT
Found at i:8430259 original size:73 final size:73
Alignment explanation
Indices: 8430108--8430422 Score: 276
Period size: 73 Copynumber: 4.3 Consensus size: 73
8430098 TGTTGCAGCA
* ** * * * **
8430108 AGAATGCATTTTCGCTGCAGTGAAAATTCTAGGCTAGTCAAACCCTCAACAGCTGAGAGTTTAAC
1 AGAATGCATTTTTGCTGCAACG-AAATTCTAGGCTAGTCAAGCCCCCAACACCTGAGAGTTTCTC
** *
8430173 GCTGTAGTG
65 GCTACAATG
* * * * *
8430182 AGAATGCCTTTTTGTTGGAATGAAATTCTAGGCTAGTCCAGCCCCCAACACCTGAGAGTTTCTCG
1 AGAATGCATTTTTGCTGCAACGAAATTCTAGGCTAGTCAAGCCCCCAACACCTGAGAGTTTCTCG
*
8430247 CTACAATA
66 CTACAATG
* * * * * * * * * * *
8430255 AGAATGCATTTTCGCTGCAGCAAAATTTTGGGCTACTTAAGCCCCTAGCACCCGAGAGTTTCTTG
1 AGAATGCATTTTTGCTGCAACGAAATTCTAGGCTAGTCAAGCCCCCAACACCTGAGAGTTTCTCG
*
8430320 CTACAACG
66 CTACAATG
*
8430328 AGAATGCATTTTTGCTGTAACGAAATTCTAGGCTAGTCAAGCCCCCAACA-CTCGAGAGTTTCTC
1 AGAATGCATTTTTGCTGCAACGAAATTCTAGGCTAGTCAAGCCCCCAACACCT-GAGAGTTTCTC
* *
8430392 -CTTGCAACG
65 GC-TACAATG
* *
8430401 AGAATG-AATTTCGCTGCAACGA
1 AGAATGCATTTTTGCTGCAACGA
8430423 GAAACAGGGC
Statistics
Matches: 190, Mismatches: 49, Indels: 6
0.78 0.20 0.02
Matches are distributed among these distances:
72 15 0.08
73 158 0.83
74 17 0.09
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (73 bp):
AGAATGCATTTTTGCTGCAACGAAATTCTAGGCTAGTCAAGCCCCCAACACCTGAGAGTTTCTCG
CTACAATG
Found at i:8430682 original size:35 final size:36
Alignment explanation
Indices: 8430604--8430691 Score: 110
Period size: 35 Copynumber: 2.5 Consensus size: 36
8430594 TCTCACTAGC
* *
8430604 TCATGTGCACTTCCACACCACACATAGCTAGAATCA
1 TCATGTGCACTCCCACACCACACAAAGCTAGAATCA
*
8430640 TCTTGTGCACTCCCACACCACA-AAAGGC-A-ATATCA
1 TCATGTGCACTCCCACACCACACAAA-GCTAGA-ATCA
8430675 TCATGTGCACTCCCACA
1 TCATGTGCACTCCCACA
8430692 TCGCACATGG
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
34 1 0.02
35 23 0.50
36 22 0.48
ACGTcount: A:0.32, C:0.35, G:0.11, T:0.22
Consensus pattern (36 bp):
TCATGTGCACTCCCACACCACACAAAGCTAGAATCA
Found at i:8430736 original size:43 final size:41
Alignment explanation
Indices: 8430676--8430775 Score: 159
Period size: 43 Copynumber: 2.4 Consensus size: 41
8430666 GCAATATCAT
8430676 CATGTGCACTCCCACATCGCACATGGCATATATCATCAGTG
1 CATGTGCACTCCCACATCGCACATGGCATATATCATCAGTG
8430717 NCATGTGCAACTCCCACATCGCACATGGCATATATCATCAGTG
1 -CATGTGC-ACTCCCACATCGCACATGGCATATATCATCAGTG
*
8430760 --TGTGCACTCACACATC
1 CATGTGCACTCCCACATC
8430776 ACACCACTAT
Statistics
Matches: 56, Mismatches: 1, Indels: 5
0.90 0.02 0.08
Matches are distributed among these distances:
39 10 0.18
40 5 0.09
42 7 0.12
43 34 0.61
ACGTcount: A:0.27, C:0.32, G:0.16, T:0.24
Consensus pattern (41 bp):
CATGTGCACTCCCACATCGCACATGGCATATATCATCAGTG
Found at i:8430817 original size:52 final size:52
Alignment explanation
Indices: 8430736--8431048 Score: 473
Period size: 52 Copynumber: 6.0 Consensus size: 52
8430726 ACTCCCACAT
*
8430736 CGCACATGGCATATATCATCAGTGTGTGCACTCACACATCACACCACTATCA
1 CGCACATGGCATATATCATCAGTGTGTGCACTCACACAGCACACCACTATCA
* * *
8430788 CGCACATGGTATATATCATCAGTGAGTGCACTCACACAGCACACCACCATCA
1 CGCACATGGCATATATCATCAGTGTGTGCACTCACACAGCACACCACTATCA
** * *
8430840 TACACATGGCATATATCATCTGTGTGTGCACTAACACAGCACACCACTATCA
1 CGCACATGGCATATATCATCAGTGTGTGCACTCACACAGCACACCACTATCA
* *
8430892 CGCATATGGCATATATCATCAGTGTGGGCACTCACACAGCACACCACTATCA
1 CGCACATGGCATATATCATCAGTGTGTGCACTCACACAGCACACCACTATCA
** *
8430944 TACACATGGCATATATCATCTGTGTGTGCACTCACACAGCACACCACTATCA
1 CGCACATGGCATATATCATCAGTGTGTGCACTCACACAGCACACCACTATCA
* * * *
8430996 TGCACATGGCATATATCATCAGTGTGTGCACTCGCACAACACACCACGATCA
1 CGCACATGGCATATATCATCAGTGTGTGCACTCACACAGCACACCACTATCA
8431048 C
1 C
8431049 CATCATGTGC
Statistics
Matches: 233, Mismatches: 28, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
52 233 1.00
ACGTcount: A:0.31, C:0.31, G:0.15, T:0.22
Consensus pattern (52 bp):
CGCACATGGCATATATCATCAGTGTGTGCACTCACACAGCACACCACTATCA
Found at i:8433420 original size:54 final size:55
Alignment explanation
Indices: 8433330--8433494 Score: 197
Period size: 54 Copynumber: 3.0 Consensus size: 55
8433320 ATTTGTATAC
* * *
8433330 CACCACATCTCATCCAGCTCATGTGCATCCCTCCACAACGTGCACATAGCCGGA-
1 CACCACATCTCACCCAGCTCATGTGCATCCCCCCACATCGTGCACATAGCCGGAG
* * **
8433384 CACCCCATCTCACCCAGCTCATGTGTATCCCCCCACATCGTGCACATAGTTGGAG
1 CACCACATCTCACCCAGCTCATGTGCATCCCCCCACATCGTGCACATAGCCGGAG
* *** * *
8433439 TCATCGTGTCTCACCCAGCTCATGTGCATCCCCCCATATCGTGCACATAACCGGAG
1 -CACCACATCTCACCCAGCTCATGTGCATCCCCCCACATCGTGCACATAGCCGGAG
8433495 TCATCATGTA
Statistics
Matches: 93, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
54 47 0.51
56 46 0.49
ACGTcount: A:0.23, C:0.39, G:0.16, T:0.21
Consensus pattern (55 bp):
CACCACATCTCACCCAGCTCATGTGCATCCCCCCACATCGTGCACATAGCCGGAG
Found at i:8433495 original size:56 final size:56
Alignment explanation
Indices: 8433335--8433499 Score: 208
Period size: 56 Copynumber: 3.0 Consensus size: 56
8433325 TATACCACCA
* * * *
8433335 CATCTCATCCAGCTCATGTGCATCCCTCCACAACGTGCACATAGCCGGA--CACCC
1 CATCTCACCCAGCTCATGTGCATCCCCCCACATCGTGCACATAGCCGGAGTCATCC
* ** *
8433389 CATCTCACCCAGCTCATGTGTATCCCCCCACATCGTGCACATAGTTGGAGTCATCG
1 CATCTCACCCAGCTCATGTGCATCCCCCCACATCGTGCACATAGCCGGAGTCATCC
** * *
8433445 TGTCTCACCCAGCTCATGTGCATCCCCCCATATCGTGCACATAACCGGAGTCATC
1 CATCTCACCCAGCTCATGTGCATCCCCCCACATCGTGCACATAGCCGGAGTCATC
8433500 ATGTACATCC
Statistics
Matches: 94, Mismatches: 15, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
54 43 0.46
56 51 0.54
ACGTcount: A:0.22, C:0.39, G:0.16, T:0.22
Consensus pattern (56 bp):
CATCTCACCCAGCTCATGTGCATCCCCCCACATCGTGCACATAGCCGGAGTCATCC
Found at i:8433526 original size:19 final size:19
Alignment explanation
Indices: 8433504--8433564 Score: 52
Period size: 19 Copynumber: 3.2 Consensus size: 19
8433494 GTCATCATGT
8433504 ACATCCCCTCACATCGTGC
1 ACATCCCCTCACATCGTGC
**** * *
8433523 ACATATAATGC-CATTGTGT
1 ACATCCCCT-CACATCGTGC
8433542 ACATCCCCTCACATCGTGC
1 ACATCCCCTCACATCGTGC
8433561 ACAT
1 ACAT
8433565 ATAATGCCAT
Statistics
Matches: 28, Mismatches: 12, Indels: 4
0.64 0.27 0.09
Matches are distributed among these distances:
18 1 0.04
19 26 0.93
20 1 0.04
ACGTcount: A:0.26, C:0.36, G:0.11, T:0.26
Consensus pattern (19 bp):
ACATCCCCTCACATCGTGC
Found at i:8433551 original size:38 final size:38
Alignment explanation
Indices: 8433501--8433601 Score: 175
Period size: 38 Copynumber: 2.7 Consensus size: 38
8433491 GGAGTCATCA
8433501 TGTACATCCCCTCACATCGTGCACATATAATGCCATTG
1 TGTACATCCCCTCACATCGTGCACATATAATGCCATTG
8433539 TGTACATCCCCTCACATCGTGCACATATAATGCCATTG
1 TGTACATCCCCTCACATCGTGCACATATAATGCCATTG
* * *
8433577 TGTACATCCCCCCATATTGTGCACA
1 TGTACATCCCCTCACATCGTGCACA
8433602 CAGGCAGTAT
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 60 1.00
ACGTcount: A:0.26, C:0.33, G:0.13, T:0.29
Consensus pattern (38 bp):
TGTACATCCCCTCACATCGTGCACATATAATGCCATTG
Found at i:8433583 original size:19 final size:19
Alignment explanation
Indices: 8433523--8433583 Score: 52
Period size: 19 Copynumber: 3.2 Consensus size: 19
8433513 CACATCGTGC
8433523 ACATATAATGCCATTGTGT
1 ACATATAATGCCATTGTGT
**** * *
8433542 ACATCCCCT-CACATCGTGC
1 ACATATAATGC-CATTGTGT
8433561 ACATATAATGCCATTGTGT
1 ACATATAATGCCATTGTGT
8433580 ACAT
1 ACAT
8433584 CCCCCCATAT
Statistics
Matches: 28, Mismatches: 12, Indels: 4
0.64 0.27 0.09
Matches are distributed among these distances:
18 1 0.04
19 26 0.93
20 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.31
Consensus pattern (19 bp):
ACATATAATGCCATTGTGT
Found at i:8434558 original size:15 final size:16
Alignment explanation
Indices: 8434515--8434574 Score: 54
Period size: 15 Copynumber: 3.8 Consensus size: 16
8434505 CCTTTTTTTT
*
8434515 TCTTTTTTCTTTCTCC
1 TCTTTCTTCTTTCTCC
*
8434531 TTTTCTCGTTTCTTTCT-C
1 TCTT-TC--TTCTTTCTCC
8434549 TCTTTCTTC-TTCTCC
1 TCTTTCTTCTTTCTCC
8434564 TCTTTC-TCTTT
1 TCTTTCTTCTTT
8434575 GGTCGGCAGC
Statistics
Matches: 36, Mismatches: 3, Indels: 11
0.72 0.06 0.22
Matches are distributed among these distances:
14 6 0.17
15 12 0.33
16 3 0.08
17 3 0.08
18 4 0.11
19 8 0.22
ACGTcount: A:0.00, C:0.32, G:0.02, T:0.67
Consensus pattern (16 bp):
TCTTTCTTCTTTCTCC
Found at i:8434808 original size:35 final size:34
Alignment explanation
Indices: 8434680--8434868 Score: 245
Period size: 34 Copynumber: 5.5 Consensus size: 34
8434670 ACAACCCTTG
8434680 TTTTCTCTCTC-AAATTTGCAGCAAAACTCTTTCT
1 TTTTC-CTCTCAAAATTTGCAGCAAAACTCTTTCT
*
8434714 TTTTCCTCTCAAAATTTGCAGCAAAACTCTTTTT
1 TTTTCCTCTCAAAATTTGCAGCAAAACTCTTTCT
*
8434748 TTTTCCTCTCAAAATTTGTAGCAAAACTCTTTCT
1 TTTTCCTCTCAAAATTTGCAGCAAAACTCTTTCT
* * * *
8434782 ATTTCCTTCTAAAAATTTGCAACAAAACTCTTTTT
1 TTTTCC-TCTCAAAATTTGCAGCAAAACTCTTTCT
* * * **
8434817 ATTTTCGTTTCAAAATTTACAGCAAAACTCTGGCT
1 -TTTTCCTCTCAAAATTTGCAGCAAAACTCTTTCT
8434852 TTTTCCTCTCAAAATTT
1 TTTTCCTCTCAAAATTT
8434869 TGCAACACAA
Statistics
Matches: 133, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
33 5 0.04
34 79 0.59
35 45 0.34
36 4 0.03
ACGTcount: A:0.28, C:0.23, G:0.06, T:0.43
Consensus pattern (34 bp):
TTTTCCTCTCAAAATTTGCAGCAAAACTCTTTCT
Found at i:8434857 original size:70 final size:68
Alignment explanation
Indices: 8434680--8434875 Score: 259
Period size: 70 Copynumber: 2.8 Consensus size: 68
8434670 ACAACCCTTG
* *
8434680 TTTTCTCTCTC-AAATTTGCAGCAAAACTCTTTCTTTTTCCTCTCAAAATTTGCAGCAAAACTCT
1 TTTTC-CTCTCAAAATTTGCAGCAAAACTCTTTCTTTTTCCTCTAAAAATTTGCAACAAAACTCT
8434744 TTTT
65 TTTT
* *
8434748 TTTTCCTCTCAAAATTTGTAGCAAAACTCTTTCTATTTCCTTCTAAAAATTTGCAACAAAACTCT
1 TTTTCCTCTCAAAATTTGCAGCAAAACTCTTTCTTTTTCC-TCTAAAAATTTGCAACAAAACTCT
8434813 TTTT
65 TTTT
* * * ** *
8434817 ATTTTCGTTTCAAAATTTACAGCAAAACTCTGGCTTTTTCCTCTCAAAATTTTGCAACA
1 -TTTTCCTCTCAAAATTTGCAGCAAAACTCTTTCTTTTTCCTCT-AAAAATTTGCAACA
8434876 CAAGGCCTTT
Statistics
Matches: 112, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
67 5 0.04
68 32 0.29
69 29 0.26
70 46 0.41
ACGTcount: A:0.29, C:0.23, G:0.06, T:0.42
Consensus pattern (68 bp):
TTTTCCTCTCAAAATTTGCAGCAAAACTCTTTCTTTTTCCTCTAAAAATTTGCAACAAAACTCTT
TTT
Found at i:8436145 original size:18 final size:18
Alignment explanation
Indices: 8436119--8436166 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 18
8436109 ATAACAGGTG
*
8436119 AAAAGAATATTTTAG-AAT
1 AAAATAATATTTT-GTAAT
8436137 AAAATAATATTTTGTTAAT
1 AAAATAATATTTTG-TAAT
8436156 AAAATAATATT
1 AAAATAATATT
8436167 AAAATATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 1 0.04
18 12 0.44
19 14 0.52
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (18 bp):
AAAATAATATTTTGTAAT
Found at i:8437108 original size:17 final size:17
Alignment explanation
Indices: 8437086--8437134 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
8437076 AGAGAGAAAG
8437086 GAAAAGAGGAGGAAGAA
1 GAAAAGAGGAGGAAGAA
*
8437103 GAAAAGA-GAGAAAGGAA
1 GAAAAGAGGAGGAA-GAA
* *
8437120 GAAAGGAGGAAGAAG
1 GAAAAGAGGAGGAAG
8437135 TAAATGGCTT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
16 5 0.19
17 17 0.65
18 4 0.15
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (17 bp):
GAAAAGAGGAGGAAGAA
Found at i:8437112 original size:31 final size:31
Alignment explanation
Indices: 8437074--8437134 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
8437064 CTTTGAAAGT
8437074 AAAGAGAGAAAGGAA-AAGAGGAGGAAGAAGA
1 AAAGAGAGAAAGGAAGAA-AGGAGGAAGAAGA
8437105 AAAGAGAGAAAGGAAGAAAGGAGGAAGAAG
1 AAAGAGAGAAAGGAAGAAAGGAGGAAGAAG
8437135 TAAATGGCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
31 27 0.93
32 2 0.07
ACGTcount: A:0.61, C:0.00, G:0.39, T:0.00
Consensus pattern (31 bp):
AAAGAGAGAAAGGAAGAAAGGAGGAAGAAGA
Found at i:8438201 original size:15 final size:16
Alignment explanation
Indices: 8438174--8438203 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
8438164 CTAAAACTCA
8438174 TGCAAAGGTTTTACAG
1 TGCAAAGGTTTTACAG
8438190 TGCAAA-GTTTTACA
1 TGCAAAGGTTTTACA
8438204 AAAAGGGGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.33
Consensus pattern (16 bp):
TGCAAAGGTTTTACAG
Found at i:8439779 original size:171 final size:169
Alignment explanation
Indices: 8439483--8440478 Score: 808
Period size: 171 Copynumber: 5.9 Consensus size: 169
8439473 GGTCGTTACA
* * * *
8439483 ATGCAAACATCCAATTAT-AATCAATTTTCACTAAAAATGAAAAAGA-TTTCATTTGACAATCAT
1 ATGCAAACATCCAATTATGATTC-ATTTTAAC-AAAAATGAAAAAGATTTTGATTT-AAAATCAT
* * * * * * *
8439546 TTATAAGTTTATAAAACCATTTGAAGCGAGTAACAAGACTTTTAAAGGTATG-GCTAACTATAAA
63 TTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCAAAGGCATGAG-TGACTATAAA
* * * ** *
8439610 TAGAATTTTCTTATCAATGGATGGTTTTTGCTTCACATTTCCCT
127 TGGACTTTTCTTGTCAATGGATGGCATTTACTTCACATTT-CCT
* ** * *
8439654 ATGCAAATC-TCTAATTATGATTCATTTTAACAAAAACCATAAAAGATTTTGTTTTTAAATCATT
1 ATGCAAA-CATCCAATTATGATTCATTTTAACAAAAATGA-AAAAGATTTTGATTTAAAATCATT
* * * * *
8439718 TATAAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAAGTATGATTGACTATAAATA
64 TATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATG
* * *** * *
8439783 GACGTTTCTTGTCAATGGACGGCATCCGCATCA-AGTTTCTT
129 GACTTTTCTTGTCAATGGATGGCATTTACTTCACA-TTTCCT
* * * * * ** *
8439824 GATGTAAACATCCAATTTTGGTTGATTTTAACCAAAATGAAAAA-AAATTGATTGAAAATCATTT
1 -ATGCAAACATCCAATTATGATTCATTTTAACAAAAATGAAAAAGATTTTGATTTAAAATCATTT
** ** * * *
8439888 ATAAGATTATAAAACCATTTAAAGCAAGTAATTAGGCATTCAAAGGCATGAGT-AGCAAAAAATG
65 ATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCAAAGGCATGAGTGA-CTATAAATG
* * ** *
8439952 GACTTTTCTTGTCAATGGATGGCATTCAATTCATGTTTCCCA
129 GACTTTTCTTGTCAATGGATGGCATTTACTTCACATTT-CCT
* *
8439994 ATGCAAACATCC-ATTCATGA-TCGATTTTAACCAAAAATGAAAAAGATTTTGATTTGAAATAAT
1 ATGCAAACATCCAATT-ATGATTC-ATTTTAA-CAAAAATGAAAAAGATTTTGATTTAAAATCAT
* * * * *
8440057 ATATAAGATTATAAAACCATTTAAA-TCAAGCAACAAGGCTTTCGATGGCATGAGTGACTATAAA
63 TTATAAGATTATAAAACCATTTAAAGT-GAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAA
* * ** * * *
8440121 TGGCCTTTTTTTGTCAATTAATGACATCTACTTCATATTTCCT
127 TGGACTTTTCTTGTCAATGGATGGCATTTACTTCACATTTCCT
* * * *
8440164 GATGCAAACATCCAATTATGATTTATTTTAACTAGAAATGAAAAAAATTTTGATTCAAAATCATT
1 -ATGCAAACATCCAATTATGATTCATTTTAAC-AAAAATGAAAAAGATTTTGATTTAAAATCATT
* * * ** *
8440229 CATAAGATTATTAAACCACTTAAAGTGAGTAACAAGGCTTTTGAAGGCATTAGTGACTATAAATG
64 TATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATG
* * * * *
8440294 GACTGTTCTTGTCCATGGATGGCTTTTACTTCAC--GTCTT
129 GACTTTTCTTGTCAATGGATGGCATTTACTTCACATTTCCT
** *
8440333 AGTGCAAACAT---ATTATGA-TCGATTTTAACTAGGAA-CACAAAAGATTTTGATTTAAAATCA
1 A-TGCAAACATCCAATTATGATTC-ATTTTAAC-AAAAATGA-AAAAGATTTTGATTTAAAATCA
* * * *
8440393 TTTGAAAAGATTATAAAA-CATTTAAAGTGAGTAATCAA-TCTTTCGATGGCATGAGTGACTATA
62 TTT-ATAAGATTATAAAACCATTTAAAGTGAGTAA-CAAGGCTTTCAAAGGCATGAGTGACTAT-
*
8440456 AAATTGGA-TTTGCTTGTCAATGG
124 AAA-TGGACTTTTCTTGTCAATGG
8440479 CTTGCATCCG
Statistics
Matches: 663, Mismatches: 133, Indels: 62
0.77 0.16 0.07
Matches are distributed among these distances:
165 2 0.00
166 77 0.12
167 30 0.05
168 10 0.02
169 129 0.19
170 30 0.05
171 369 0.56
172 16 0.02
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (169 bp):
ATGCAAACATCCAATTATGATTCATTTTAACAAAAATGAAAAAGATTTTGATTTAAAATCATTTA
TAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATGGA
CTTTTCTTGTCAATGGATGGCATTTACTTCACATTTCCT
Found at i:8440175 original size:340 final size:337
Alignment explanation
Indices: 8439667--8440457 Score: 848
Period size: 340 Copynumber: 2.3 Consensus size: 337
8439657 CAAATCTCTA
* * *
8439667 ATTATGATTC-ATTTTAA-CAAAAACCATAAAAGATTTTGTTTTTAAATCATTTATAAGATTATA
1 ATTATGA-TCGATTTTAACCAAAAA-CACAAAAGATTTTGATTTAAAATCATTTATAAGATTATA
* * ** * *
8439730 AAACCATTTAAAGTGAGTAATAAGGCTTTCAAAAGTATGATTGACTATAAATAGACGTTTCTTGT
64 AAACCATTTAAAGTGAGTAACAAGGCTTTCGATGGCATGAGTGACTATAAATAGACGTTTCTTGT
* * * * * * *
8439795 CAATGGACGGCATCCGCATCAAGTTTCTTGATGTAAACATCCAATTTTGGTTGATTTTAACCA-A
129 CAATGAACGACATCCACATCAAGTTTCCTGATGCAAACATCCAATTATGATTGATTTTAACCAGA
* * * **
8439859 AATGAAAAAAA-ATTGATTGAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAATTAG
194 AATGAAAAAAATATTGATTCAAAATCATTCATAAGATTATAAAACCACTTAAAGCAAGTAACAAG
* *
8439923 GCATTCAAAGGCATGAGT-AGCAAAAAATGGACTTTTCTTGTCAATGGATGGCATTCAATTCATG
259 GCATTCAAAGGCATGAGTGA-CAAAAAATGGACTGTTCTTGTCAATGGATGGCATTCAATTCACG
8439987 T-TTCCCAATGCAAACAT
323 TCTT---AATGCAAACAT
* * * *
8440004 CCATTCATGATCGATTTTAACCAAAAATGA-AAAAGATTTTGATTTGAAATAATATATAAGATTA
1 --ATT-ATGATCGATTTTAACCAAAAA-CACAAAAGATTTTGATTTAAAATCATTTATAAGATTA
* * * * * *
8440068 TAAAACCATTTAAA-TCAAGCAACAAGGCTTTCGATGGCATGAGTGACTATAAATGGCCTTTTTT
62 TAAAACCATTTAAAGT-GAGTAACAAGGCTTTCGATGGCATGAGTGACTATAAATAGACGTTTCT
* * * * *
8440132 TGTCAATTAATGACATCTACTTCATA-TTTCCTGATGCAAACATCCAATTATGATTTATTTTAAC
126 TGTCAATGAACGACATCCACATCA-AGTTTCCTGATGCAAACATCCAATTATGATTGATTTTAAC
* * * **
8440196 TAGAAATGAAAAAAATTTTGATTCAAAATCATTCATAAGATTATTAAACCACTTAAAGTGAGTAA
190 CAGAAATGAAAAAAATATTGATTCAAAATCATTCATAAGATTATAAAACCACTTAAAGCAAGTAA
* ** * * * * * * *
8440261 CAAGGCTTTTGAAGGCATTAGTGACTATAAATGGACTGTTCTTGTCCATGGATGGCTTTTACTTC
255 CAAGGCATTCAAAGGCATGAGTGACAAAAAATGGACTGTTCTTGTCAATGGATGGCATTCAATTC
*
8440326 ACGTCTTAGTGCAAACAT
320 ACGTCTTAATGCAAACAT
* ** *
8440344 ATTATGATCGATTTTAACTAGGAACACAAAAGATTTTGATTTAAAATCATTTGAAAAGATTATAA
1 ATTATGATCGATTTTAACCAAAAACACAAAAGATTTTGATTTAAAATCATTT-ATAAGATTATAA
*
8440409 AA-CATTTAAAGTGAGTAATCAA-TCTTTCGATGGCATGAGTGACTATAAA
65 AACCATTTAAAGTGAGTAA-CAAGGCTTTCGATGGCATGAGTGACTATAAA
8440458 ATTGGATTTG
Statistics
Matches: 375, Mismatches: 64, Indels: 28
0.80 0.14 0.06
Matches are distributed among these distances:
336 1 0.00
337 78 0.21
338 20 0.05
339 6 0.02
340 152 0.41
341 20 0.05
342 95 0.25
343 3 0.01
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.34
Consensus pattern (337 bp):
ATTATGATCGATTTTAACCAAAAACACAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAA
ACCATTTAAAGTGAGTAACAAGGCTTTCGATGGCATGAGTGACTATAAATAGACGTTTCTTGTCA
ATGAACGACATCCACATCAAGTTTCCTGATGCAAACATCCAATTATGATTGATTTTAACCAGAAA
TGAAAAAAATATTGATTCAAAATCATTCATAAGATTATAAAACCACTTAAAGCAAGTAACAAGGC
ATTCAAAGGCATGAGTGACAAAAAATGGACTGTTCTTGTCAATGGATGGCATTCAATTCACGTCT
TAATGCAAACAT
Found at i:8448060 original size:59 final size:60
Alignment explanation
Indices: 8447959--8448108 Score: 178
Period size: 59 Copynumber: 2.5 Consensus size: 60
8447949 ATATTTGATT
* ** *
8447959 GTAATGGGGGACTTGAAGCCCCGATTCATATTGGATGCCGTGGACAATTCCCAC-AGTAG
1 GTAAAGGGGGACTTGAAGCCCTAATTCATATTGGATGCCGTGGACAATTCCCACAAATAG
* * * * *
8448018 GTAAAGGGGGACCTGAAGCGCTAATTCATATTAGG-TGGCGTGGGCAGTTCCCACAAATAG
1 GTAAAGGGGGACTTGAAGCCCTAATTCATATT-GGATGCCGTGGACAATTCCCACAAATAG
* *
8448078 GTAAAGGGAGACTTGAAGCCCTAATTTATAT
1 GTAAAGGGGGACTTGAAGCCCTAATTCATAT
8448109 ATGATGGCGT
Statistics
Matches: 76, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
59 43 0.57
60 33 0.43
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (60 bp):
GTAAAGGGGGACTTGAAGCCCTAATTCATATTGGATGCCGTGGACAATTCCCACAAATAG
Found at i:8448102 original size:60 final size:59
Alignment explanation
Indices: 8447959--8448130 Score: 186
Period size: 60 Copynumber: 2.9 Consensus size: 59
8447949 ATATTTGATT
* ** * * * *
8447959 GTAATGGGGGACTTGAAGCCCCGATTCATATT-GGATGCCGTGGACAATTCCCACAGTAG
1 GTAAAGGGGGACTTGAAGCCCTAATTCATATTAGG-TGGCGTGGGCAGTTCCCACAATAG
* *
8448018 GTAAAGGGGGACCTGAAGCGCTAATTCATATTAGGTGGCGTGGGCAGTTCCCACAAATAG
1 GTAAAGGGGGACTTGAAGCCCTAATTCATATTAGGTGGCGTGGGCAGTTCCCAC-AATAG
* * * *
8448078 GTAAAGGGAGACTTGAAGCCCTAATTTATA-TATGATGGCGTGGGTAGTTCCCA
1 GTAAAGGGGGACTTGAAGCCCTAATTCATATTA-GGTGGCGTGGGCAGTTCCCA
8448131 TAAGTAAGTG
Statistics
Matches: 95, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
59 45 0.47
60 50 0.53
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (59 bp):
GTAAAGGGGGACTTGAAGCCCTAATTCATATTAGGTGGCGTGGGCAGTTCCCACAATAG
Found at i:8450289 original size:170 final size:171
Alignment explanation
Indices: 8449988--8450310 Score: 431
Period size: 170 Copynumber: 1.9 Consensus size: 171
8449978 TAATTGACAC
* * * **
8449988 GTTTCTCAATGCAAACATCCAATTATGATCGATTTTAACTAGGAAAAAAAAATATTTTGATTTAA
1 GTTTCTCAATGCAAACATCCAATTATGATCGATTTTAACCAGAAAAAAAAAAGATTTCAATTTAA
* * * *
8450053 AATCATTTGAAAGATTATAAAACCATTTAAAACGAATAACAATGCTTTCGATGGCATGAGTGACT
66 AATCATTTCAAAGATTATAAAACCATTTAAAACGAATAACAAGGCTTCCGATGGAATGAGTGACT
* * *
8450118 ATAATTGGA-TTTTCTTGTCAATTAATGGCATCCGTTTCAT
131 ATAAATGAACTTTTCTTATCAATTAATGGCATCCGTTTCAT
*
8450158 GTTTCTCAATGCAAACATCCAATTATGATTGATTTTAACCA-AAAACAAAAAAGATTTCAATTTA
1 GTTTCTCAATGCAAACATCCAATTATGATCGATTTTAACCAGAAAA-AAAAAAGATTTCAATTTA
* * *
8450222 AAATCA-TTCATAAGATTATAAAACCATTTAAAGA-GAGTAACAAGGCTTCCGAAT-TAATGATT
65 AAATCATTTCA-AAGATTATAAAACCATTTAAA-ACGAATAACAAGGCTTCCG-ATGGAATGAGT
8450284 GACTATAAATGAACTTTTCTTATCAAT
127 GACTATAAATGAACTTTTCTTATCAAT
8450311 GGATAGTTTT
Statistics
Matches: 132, Mismatches: 16, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
169 6 0.05
170 111 0.84
171 15 0.11
ACGTcount: A:0.40, C:0.14, G:0.12, T:0.34
Consensus pattern (171 bp):
GTTTCTCAATGCAAACATCCAATTATGATCGATTTTAACCAGAAAAAAAAAAGATTTCAATTTAA
AATCATTTCAAAGATTATAAAACCATTTAAAACGAATAACAAGGCTTCCGATGGAATGAGTGACT
ATAAATGAACTTTTCTTATCAATTAATGGCATCCGTTTCAT
Found at i:8450712 original size:16 final size:16
Alignment explanation
Indices: 8450693--8450723 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8450683 TAATATTTTC
*
8450693 ATATTTTAATTATAAT
1 ATATTTAAATTATAAT
8450709 ATATTTAAATTATAA
1 ATATTTAAATTATAA
8450724 ATAAAACATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
ATATTTAAATTATAAT
Found at i:8450979 original size:42 final size:43
Alignment explanation
Indices: 8450883--8450982 Score: 116
Period size: 42 Copynumber: 2.3 Consensus size: 43
8450873 AAAAATTAAT
* *
8450883 TAAAAGTATTAATATTTTAATCATAATAATATTTAACTTATAAA
1 TAAAA-TATTAATATTTTAATAATAATAATATTTAAATTATAAA
**
8450927 TAAAGA-ATTAATATTTTAA-AATTTTAATGA-TTAAATTATAAA
1 TAAA-ATATTAATATTTTAATAATAATAAT-ATTTAAATTATAAA
8450969 TAAAATATTAATAT
1 TAAAATATTAATAT
8450983 CTAAATTACC
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
41 1 0.02
42 29 0.59
43 14 0.29
44 4 0.08
45 1 0.02
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.43
Consensus pattern (43 bp):
TAAAATATTAATATTTTAATAATAATAATATTTAAATTATAAA
Found at i:8452290 original size:17 final size:17
Alignment explanation
Indices: 8452268--8452300 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8452258 AAGTGAGGAT
*
8452268 TGCTCCCTCTAAGTATA
1 TGCTCCCCCTAAGTATA
8452285 TGCTCCCCCTAAGTAT
1 TGCTCCCCCTAAGTAT
8452301 GTGCATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.33, G:0.12, T:0.33
Consensus pattern (17 bp):
TGCTCCCCCTAAGTATA
Found at i:8460619 original size:21 final size:21
Alignment explanation
Indices: 8460593--8460634 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
8460583 GGACAGAAGG
*
8460593 TTTCTCGCTACAGCGAGATTC
1 TTTCTCGCTACAGCGAAATTC
*
8460614 TTTCTCGCTGCAGCGAAATTC
1 TTTCTCGCTACAGCGAAATTC
8460635 AATTGATGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.19, C:0.29, G:0.19, T:0.33
Consensus pattern (21 bp):
TTTCTCGCTACAGCGAAATTC
Found at i:8460968 original size:37 final size:36
Alignment explanation
Indices: 8460919--8461040 Score: 190
Period size: 37 Copynumber: 3.3 Consensus size: 36
8460909 CATATACATA
8460919 CATCATCATCATGTGTGCACTCCCTACTCGCACACTT
1 CATCATCATCATGTGTGCACTCCCTACTCGCACAC-T
*
8460956 CATCATCGTCATGTGTGCACTCCCTACTCGCACACT
1 CATCATCATCATGTGTGCACTCCCTACTCGCACACT
*
8460992 CAATCATCATCATGTGTGCATTCCCTACTCGCACACCT
1 C-ATCATCATCATGTGTGCACTCCCTACTCGCACA-CT
*
8461030 CAACATCATCA
1 CATCATCATCA
8461041 CCCATCATCA
Statistics
Matches: 79, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
36 2 0.03
37 74 0.94
38 3 0.04
ACGTcount: A:0.24, C:0.38, G:0.11, T:0.28
Consensus pattern (36 bp):
CATCATCATCATGTGTGCACTCCCTACTCGCACACT
Found at i:8461865 original size:19 final size:19
Alignment explanation
Indices: 8461822--8461865 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
8461812 GAGAACAAGA
*
8461822 AGAAGAAGCTGCTGGAAAT
1 AGAAGAAGCTGCTGGAAAG
** *
8461841 TCAAGAAGTTGCTGGAAAG
1 AGAAGAAGCTGCTGGAAAG
8461860 AGAAGA
1 AGAAGA
8461866 TATTTATAGC
Statistics
Matches: 19, Mismatches: 6, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.43, C:0.09, G:0.32, T:0.16
Consensus pattern (19 bp):
AGAAGAAGCTGCTGGAAAG
Found at i:8463983 original size:27 final size:27
Alignment explanation
Indices: 8463953--8464013 Score: 79
Period size: 27 Copynumber: 2.2 Consensus size: 27
8463943 GATTCATATT
* *
8463953 TAAATGATAAATTATTAATA-TTATAAA
1 TAAAT-ATAAATGATTAATATTTAAAAA
8463980 TAAAATATAAATGATTAATATTTAAAAA
1 T-AAATATAAATGATTAATATTTAAAAA
8464008 TAAATA
1 TAAATA
8464014 ATCATAATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 19 0.63
28 11 0.37
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (27 bp):
TAAATATAAATGATTAATATTTAAAAA
Found at i:8465006 original size:19 final size:18
Alignment explanation
Indices: 8464961--8465009 Score: 52
Period size: 19 Copynumber: 2.8 Consensus size: 18
8464951 ATCAAAAATG
8464961 AAAAATATTTT---GATT
1 AAAAATATTTTAAAGATT
8464976 AAAAATATTTTAAAGATT
1 AAAAATATTTTAAAGATT
8464994 ATAAAATCA-TTTAAAG
1 A-AAAAT-ATTTTAAAG
8465010 CGAGTAATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
15 11 0.38
18 5 0.17
19 12 0.41
20 1 0.03
ACGTcount: A:0.53, C:0.02, G:0.06, T:0.39
Consensus pattern (18 bp):
AAAAATATTTTAAAGATT
Found at i:8465400 original size:171 final size:170
Alignment explanation
Indices: 8464325--8466507 Score: 1598
Period size: 171 Copynumber: 12.9 Consensus size: 170
8464315 AAACGTGTTA
* * ** * * *
8464325 TTAAAGCGAGTAACAAGGCTTTTGAAGG-ATGGCTGACTATAAATGAACTTTTCCTGTCAATGGA
1 TTAAAGTGAGTAATAAGGCTTTCAAAGGCATGACTGACTATAAATGGACTTTTCTTGTCAATGGA
* * * * * * * *
8464389 TGGCATCCGCTTCACGTTTCCCAATGCAAACAACCAATTAT-AACAAATTTACCCAATAATGTAA
66 TGGCATTCGCTTCACGTTTCCCAATGCAAACATCCAATTATGATCGATTTTAACCAAAAAT-AAA
* * * *
8464453 AACA-ATCGA-TTGAAAATCATTTATAAGTTTATAAAACCAT
130 AATATTTTGATTTG-AAATCATTTATAAGATTATAAAACCAT
* * * * * *
8464493 TTAAAGTGAGCAACAAGGCTTCCAAAGGCATGACTGACTATAAGTTGACTTTTCTTCTCAATGGA
1 TTAAAGTGAGTAATAAGGCTTTCAAAGGCATGACTGACTATAAATGGACTTTTCTTGTCAATGGA
* * * *
8464558 TGGCATCCGCATCACGTTTCTCAATGCCAAA-ATTCAATTATGATCGATTTTAACCAAAACA-AA
66 TGGCATTCGCTTCACGTTTCCCAATG-CAAACATCCAATTATGATCGATTTTAACCAAAA-ATAA
* * *
8464621 GAAA-ATTTTGA-TTGAAAATAATTTA-AAGTTTATAACACCAT
129 -AAATATTTTGATTTG-AAATCATTTATAAGATTATAAAACCAT
** * ** * *
8464662 TTAAAGCAAGTAATAACGCTTTTGAAGGTATGACTGACTATAAATGGACTTTTCTTATCAATGGA
1 TTAAAGTGAGTAATAAGGCTTTCAAAGGCATGACTGACTATAAATGGACTTTTCTTGTCAATGGA
* * * * * ** * * * *
8464727 CGGCATCCGCTTGATGTTGCTTGAA-GCAATCATCCAATTTTGCTTTG-TTTTAACCAAAAATGA
66 TGGCATTCGCTTCACGTTTC-CCAATGCAAACATCCAATTATG-ATCGATTTTAACCAAAAAT-A
* ** *
8464790 GAAAA-ATATTTAATTAAAAATTATTTATAAGATTATAAAACCAT
128 -AAAATAT-TTTGATTTGAAATCATTTATAAGATTATAAAACCAT
** * * * * * * * *
8464834 TTAAAGTGAGTAATTCGACTTTCAAAGGAATGAGTGACTTTACATGGTCCTCTCTTGTCAATGGA
1 TTAAAGTGAGTAATAAGGCTTTCAAAGGCATGACTGACTATAAATGGACTTTTCTTGTCAATGGA
* * * *
8464899 TGGCATTCACATCACGTTTCCCAATGCAAACATCCAATTATGATCAATTTTAATCAAAAATGAAA
66 TGGCATTCGCTTCACGTTTCCCAATGCAAACATCCAATTATGATCGATTTTAACCAAAAAT-AAA
** *
8464964 AATATTTTGATTAAAAAT-ATTT-TAAAGATTATAAAATCAT
130 AATATTTTGATTTGAAATCATTTAT-AAGATTATAAAACCAT
* * * * *
8465004 TTAAAGCGAGTAATAAGGCTTTCAATGGCATGAGTGTA-TATAAATGAAATTTTCTTGTCAATGG
1 TTAAAGTGAGTAATAAGGCTTTCAAAGGCATGACTG-ACTATAAATGGACTTTTCTTGTCAATGG
*** * * *
8465068 ATGGCATGT-GCTTCACGTTTCTTGATGCAAACATCCAATTATGATTTG-TTTTAACTAAAAAAG
65 ATGGCAT-TCGCTTCACGTTTCCCAATGCAAACATCCAATTATGA-TCGATTTTAAC-CAAAAAT
* * *
8465131 AAAACAAATTCAACTGA--TGAAAATCATTTATAATATTATAAAACCAT
127 AAAA-ATATT---TTGATTTG-AAATCATTTATAAGATTATAAAACCAT
* * * * * * * **
8465178 TCAAAGTGAGTAATTAGACTTTCGAATGCATGAGTGACTATAACTGGACTTTTCTTACCAATGGA
1 TTAAAGTGAGTAATAAGGCTTTCAAAGGCATGACTGACTATAAATGGACTTTTCTTGTCAATGGA
* * * * * *
8465243 AGACATTCACTTCATGTTTCCCAATGCAAACATCCAATTATAATCAATTTTAACCAAAAATAAGA
66 TGGCATTCGCTTCACGTTTCCCAATGCAAACATCCAATTATGATCGATTTTAACCAAAAATAA-A
* ** * *
8465308 AAGATTTCAATTTGAAATCATTTATAAGATTATAAAACAAC
130 AATATTTTGATTTGAAATCATTTATAAGATTATAAAACCAT
* ** * * *
8465349 TTAAAGTGAGCAGCAAGGCTTTCAAAGGCATGACTGATTATAAATGGACTTTTATTGTCAATGGG
1 TTAAAGTGAGTAATAAGGCTTTCAAAGGCATGACTGACTATAAATGGACTTTTCTTGTCAATGGA
* * * *
8465414 TTGCATTCGCTTAACGTTTCCCAATGCAAACATCCAATTATGATTGATGTTAACCAAAAATGAAA
66 TGGCATTCGCTTCACGTTTCCCAATGCAAACATCCAATTATGATCGATTTTAACCAAAAAT-AAA
* * * * *
8465479 AAGATTTTGATTTAAAATGATTTATAAGTTTACAAAACCAGT
130 AATATTTTGATTTGAAATCATTTATAAGATTATAAAACCA-T
* * * * *
8465521 TGAAACTG-GTAATAAGGTTTTCAAAGGCATGACTGACTATAAATGGATATTTTCTTGTCAATGT
1 TTAAAGTGAGTAATAAGGCTTTCAAAGGCATGACTGACTATAAATGGA-CTTTTCTTGTCAATGG
* * * *** *
8465585 ACGACA-TCTGCTTCATGTTTCTTGATGTAAACATCCAATTATGATCTG-TTTTAACCAAAAATG
65 ATGGCATTC-GCTTCACGTTTCCCAATGCAAACATCCAATTATGATC-GATTTTAACCAAAAAT-
* *
8465648 ACAAAA-ATATTTGA-TTGAAAATCATTTGTAAGATTACAAAACCAT
127 A-AAAATAT-TTTGATTTG-AAATCATTTATAAGATTATAAAACCAT
* ** ** * *
8465693 TTAAAGTAAGTAATTCGGCTTTCAAAAACATGAATG--TTTAAATGGA-----CTTGTCAAT-GA
1 TTAAAGTGAGTAATAAGGCTTTCAAAGGCATGACTGACTATAAATGGACTTTTCTTGTCAATGGA
** * * * * *
8465750 TGGC-TTCAATTCATGTTTCCCAATGCAAGCATCCAATTATGATTGATTTGAACCAAAAAAGAAA
66 TGGCATTCGCTTCACGTTTCCCAATGCAAACATCCAATTATGATCGATTTTAACC-AAAAATAAA
** * * * *
8465814 AATATTTCAATTTAAAATAATTTATAAGATTTTAAAAACAT
130 AATATTTTGATTTGAAATCATTTATAAGATTATAAAACCAT
* * * ** *
8465855 TTAAAGCGAGTAACAAGGGTTTCGATAA--CATGACTGACTATAAATTAACTTTTCTTGAT-AGT
1 TTAAAGTGAGTAATAAGGCTTTC-A-AAGGCATGACTGACTATAAATGGACTTTTCTTG-TCAAT
* ** ** * * * * *
8465917 GGATGGTAGCCGCTTCTTGTTTCCTAATGCAAACATTCAATTATGATTGCTTTTAACTAAAAATA
63 GGATGGCATTCGCTTCACGTTTCCCAATGCAAACATCCAATTATGATCGATTTTAACCAAAAAT-
8465982 AAAAATATTTTGATTTGAAATCATTTATAAGATTATAAAACCAT
127 AAAAATATTTTGATTTGAAATCATTTATAAGATTATAAAACCAT
* * * * * * *
8466026 TTAAAGCGAGTAACAAGGCATTCGAAGGCATGACTAACTATAAATGGACTTTTCTCGGCAATGGA
1 TTAAAGTGAGTAATAAGGCTTTCAAAGGCATGACTGACTATAAATGGACTTTTCTTGTCAATGGA
* * ** * * *
8466091 TGACATCCAATTCACGTTTCCTAATGCAAACATCCAATTTTAAT--ATGTTTGAACCAAAAATGA
66 TGGCATTCGCTTCACGTTTCCCAATGCAAACATCCAATTATGATCGAT-TTT-AACCAAAAAT-A
* *
8466154 TAAAATA-TTTGA-TTGAAAATCATTTATAAGTTTATGAAACCAT
128 -AAAATATTTTGATTTG-AAATCATTTATAAGATTATAAAACCAT
* * * * * * *
8466197 TTAAAATGAGTAATAAGGCTTTCGAAGGCATGAGTCACTTTCAATGAACTTTTCTTGTC--T--A
1 TTAAAGTGAGTAATAAGGCTTTCAAAGGCATGACTGACTATAAATGGACTTTTCTTGTCAATGGA
* * *
8466258 TTG-A-TCG-----C-TTT-CCAATACAAACATCCAATTATGATCAATTTTAACCAAAAATGAAA
66 TGGCATTCGCTTCACGTTTCCCAATGCAAACATCCAATTATGATCGATTTTAACCAAAAAT-AAA
* *
8466314 AAGATTTTGATTT-AAATCATTTATATGATTATAAAACCAT
130 AATATTTTGATTTGAAATCATTTATAAGATTATAAAACCAT
** * * * ** * **
8466354 TTAAAGCAAGTAACAAGGCTTTCGATGGCATGACAAACTATAAATGGACTTTTGTTGTTGATGGA
1 TTAAAGTGAGTAATAAGGCTTTCAAAGGCATGACTGACTATAAATGGACTTTTCTTGTCAATGGA
* * * * * * * * *
8466419 TGGCATCCACCTCATGTTTCCCGATGCAAACATTCAATTATAATTGATTTTAACAAAAAATGAGA
66 TGGCATTCGCTTCACGTTTCCCAATGCAAACATCCAATTATGATCGATTTTAACCAAAAAT-A-A
*
8466484 AAGAT-TTTTG-TTTAAAATCATTTA
129 AA-ATATTTTGATTTGAAATCATTTA
8466508 AAGCGAGTAA
Statistics
Matches: 1586, Mismatches: 339, Indels: 177
0.75 0.16 0.08
Matches are distributed among these distances:
157 75 0.05
158 37 0.02
159 9 0.01
160 3 0.00
161 3 0.00
162 55 0.03
163 43 0.03
164 19 0.01
165 10 0.01
166 1 0.00
167 2 0.00
168 27 0.02
169 183 0.12
170 218 0.14
171 518 0.33
172 196 0.12
173 72 0.05
174 114 0.07
175 1 0.00
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (170 bp):
TTAAAGTGAGTAATAAGGCTTTCAAAGGCATGACTGACTATAAATGGACTTTTCTTGTCAATGGA
TGGCATTCGCTTCACGTTTCCCAATGCAAACATCCAATTATGATCGATTTTAACCAAAAATAAAA
ATATTTTGATTTGAAATCATTTATAAGATTATAAAACCAT
Found at i:8465948 original size:506 final size:502
Alignment explanation
Indices: 8464325--8466507 Score: 1777
Period size: 506 Copynumber: 4.3 Consensus size: 502
8464315 AAACGTGTTA
* ** * * ** *
8464325 TTAAAGCGAGTAACAAGGCTTTTGA-AGGATGGCTGACTATAAATGAACTTTTCCTGTCAATGGA
1 TTAAAGCGAGTAACAAGGCTTTCGATAACATGACTGACTATAAATGGACTTTTATTGT-AGTGGA
* * *** * * * *
8464389 TGGCATCCGCTTCACGTTTCCCAATGCAAACAACCAATTAT-AACAAATTTACCCAATAATGTAA
65 TGGCATCCGCTTCATGTTTCCCAATGCAAACATCCAATTATGATTGATTTTAACCAAAAATGAAA
* * * * * * * * *
8464453 AACA-ATCGATTGAAAATCATTTATAAGTTTATAAAACCATTTAAAGTGAGCAACAAGGCTTCCA
130 AAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCA
* * * * * * * **
8464517 AAGGCATGACTGACTATAAGTTGACTTTTCTTCTCAATGGATGGCATCCGCATCACGTTTCTCAA
195 AAGGCATGACTGACTATAAATGGAATTTTCTTGTCAATGGATGACATCTGCTTCACGTTTCTTGA
* * *
8464582 TGCCAAA-ATTCAATTATGAT-CGATTTTAACCAAAACA--AAGAAAAT-TTTGATTGAAAATAA
260 TG-CAAACATCCAATTATGATATG-TTTTAACCAAAA-ATGAA-AAAATATTTGATTGAAAATCA
* * ** * * * * * * *
8464642 TTTA-AAGTTTATAACACCATTTAAAGCAAGTAATAACGCTTTTGAAGGTATGACTGACTATAAA
321 TTTATAAGATTATAAAACCATTTAAAGTGAGTAATTAGGCTTTCGAAAGCATGAGTG--TTTAAA
* * ** * * ** * * *
8464706 TGGACTTTTCTTATCAATGGACGGCATCCGCTTGATGTTGCTTGAA-GCAATCATCCAATTTTGC
384 TGGAC---T-TT-TCAAT-GATGGC-TTCAATTCATGTTTC-CCAATGCAAACATCCAATTATGA
*** * * * *
8464770 TTTGTTTTAACCAAAAATGAGAAAAATATTT-AATTAAAAATTATTTATAAGATTATAAAACCAT
441 TCAATTTTAACCAAAAA--AGAAAAAGATTTCAATT-TAAATCATTTATAAGATTATAAAAACAT
* *** * * * * * * * * * *
8464834 TTAAAGTGAGTAATTCGACTTTC-A-AAGGAATGAGTGACTTTACATGGTCCTCTCTTGTCAATG
1 TTAAAGCGAGTAACAAGGCTTTCGATAA--CATGACTGACTATAAATGGACTTTTATTGT-AGTG
* * * * ** *
8464897 GATGGCATTCACATCACGTTTCCCAATGCAAACATCCAATTATGATCAATTTTAATCAAAAATGA
63 GATGGCATCCGCTTCATGTTTCCCAATGCAAACATCCAATTATGATTGATTTTAACCAAAAATGA
* * *
8464962 AAAATATTTTGATTAAAAAT-ATTT-TAAAGATTATAAAATCATTTAAAGCGAGTAATAAGGCTT
128 AAAAGATTTTGATTTAAAATCATTTAT-AAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTT
* * * * *
8465025 TCAATGGCATGAGTGTA-TATAAATGAAATTTTCTTGTCAATGGATGGCATGTGCTTCACGTTTC
192 TCAAAGGCATGACTG-ACTATAAATGGAATTTTCTTGTCAATGGATGACATCTGCTTCACGTTTC
* * *
8465089 TTGATGCAAACATCCAATTATGATTTGTTTTAACTAAAAAAGAAAACAA-ATTCAACTGA-TGAA
256 TTGATGCAAACATCCAATTATGATATGTTTTAACCAAAAATGAAAA-AATATT----TGATTGAA
* * * *
8465152 AATCATTTATAATATTATAAAACCATTCAAAGTGAGTAATTAGACTTTCGAATGCATGAGTGACT
316 AATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAATTAGGCTTTCGAAAGCATGAGTG--T
* * * * *
8465217 ATAACTGGACTTTTCTTACCAATGGAAGACATTCACTTCATGTTTCCCAATGCAAACATCCAATT
379 TTAAATGGAC--TT-TT--CAAT-GATGGC-TTCAATTCATGTTTCCCAATGCAAACATCCAATT
* *
8465282 ATAATCAATTTTAACCAAAAATA-AGAAAGATTTCAATTTGAAATCATTTATAAGATTAT-AAAA
437 ATGATCAATTTTAACCAAAAA-AGAAAAAGATTTCAATTT-AAATCATTTATAAGATTATAAAAA
*
8465345 CAAC
500 C-AT
* * * * *
8465349 TTAAAGTGAGCAGCAAGGCTTTC-A-AAGGCATGACTGATTATAAATGGACTTTTATTGTCAATG
1 TTAAAGCGAGTAACAAGGCTTTCGATAA--CATGACTGACTATAAATGGACTTTTATTGT-AGTG
* * * * * *
8465412 GGTTGCATTCGCTTAACGTTTCCCAATGCAAACATCCAATTATGATTGATGTTAACCAAAAATGA
63 GATGGCATCCGCTTCATGTTTCCCAATGCAAACATCCAATTATGATTGATTTTAACCAAAAATGA
* * * * *
8465477 AAAAGATTTTGATTTAAAATGATTTATAAGTTTACAAAACCAGTTGAAA-CTG-GTAATAAGGTT
128 AAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCA-TTTAAAGC-GAGTAATAAGGCT
* * *
8465540 TTCAAAGGCATGACTGACTATAAATGGATATTTTCTTGTCAATGTACGACATCTGCTTCATGTTT
191 TTCAAAGGCATGACTGACTATAAATGGA-ATTTTCTTGTCAATGGATGACATCTGCTTCACGTTT
* *
8465605 CTTGATGTAAACATCCAATTATGATCTGTTTTAACCAAAAATGACAAAAATATTTGATTGAAAAT
255 CTTGATGCAAACATCCAATTATGATATGTTTTAACCAAAAATGA-AAAAATATTTGATTGAAAAT
* * * * * * *
8465670 CATTTGTAAGATTACAAAACCATTTAAAGTAAGTAATTCGGCTTTCAAAAACATGAATGTTTAAA
319 CATTTATAAGATTATAAAACCATTTAAAGTGAGTAATTAGGCTTTCGAAAGCATGAGTGTTTAAA
* * ** *
8465735 TGGACTTGTCAATGATGGCTTCAATTCATGTTTCCCAATGCAAGCATCCAATTATGATTGATTTG
384 TGGACTTTTCAATGATGGCTTCAATTCATGTTTCCCAATGCAAACATCCAATTATGATCAATTTT
* * *
8465800 AACCAAAAAAGAAAAATATTTCAATTTAAAATAATTTATAAGATTTTAAAAACAT
449 AACCAAAAAAGAAAAAGATTTCAATTT-AAATCATTTATAAGATTATAAAAACAT
* ** *
8465855 TTAAAGCGAGTAACAAGGGTTTCGATAACATGACTGACTATAAATTAACTTTTCTTGATAGTGGA
1 TTAAAGCGAGTAACAAGGCTTTCGATAACATGACTGACTATAAATGGACTTTTATTG-TAGTGGA
* * * * * * * *
8465920 TGGTAGCCGCTTCTTGTTTCCTAATGCAAACATTCAATTATGATTGCTTTTAACTAAAAATAAAA
65 TGGCATCCGCTTCATGTTTCCCAATGCAAACATCCAATTATGATTGATTTTAACCAAAAATGAAA
* * * * *
8465985 AATATTTTGATTTGAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCATTCG
130 AAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCA
* * * * *** * *
8466050 AAGGCATGACTAACTATAAATGGACTTTTCTCGGCAATGGATGACATCCAATTCACGTTTCCTAA
195 AAGGCATGACTGACTATAAATGGAATTTTCTTGTCAATGGATGACATCTGCTTCACGTTTCTTGA
* * * *
8466115 TGCAAACATCCAATTTTAATATGTTTGAACCAAAAATGATAAAATATTTGATTGAAAATCATTTA
260 TGCAAACATCCAATTATGATATGTTTTAACCAAAAATGAAAAAATATTTGATTGAAAATCATTTA
* * * * * * * *
8466180 TAAGTTTATGAAACCATTTAAAATGAGTAATAAGGCTTTCGAAGGCATGAGTCACTTTCAATGAA
325 TAAGATTATAAAACCATTTAAAGTGAGTAATTAGGCTTTCGAAAGCATGAGT--GTTTAAATGGA
* * *
8466245 CTTTTC--T--T-G--TCTATTGATCGCTTT-CCAATACAAACATCCAATTATGATCAATTTTAA
388 CTTTTCAATGATGGCTTCAATTCAT-G-TTTCCCAATGCAAACATCCAATTATGATCAATTTTAA
* ** * *
8466302 CCAAAAATGAAAAAGATTTTGATTTAAATCATTTATATGATTATAAAACCAT
451 CCAAAAAAGAAAAAGATTTCAATTTAAATCATTTATAAGATTATAAAAACAT
* ** ** * *
8466354 TTAAAGCAAGTAACAAGGCTTTCGATGGCATGACAAACTATAAATGGACTTTTGTTGTTGATGGA
1 TTAAAGCGAGTAACAAGGCTTTCGATAACATGACTGACTATAAATGGACTTTTATTGTAG-TGGA
* * * * * * *
8466419 TGGCATCCACCTCATGTTTCCCGATGCAAACATTCAATTATAATTGATTTTAACAAAAAATGAGA
65 TGGCATCCGCTTCATGTTTCCCAATGCAAACATCCAATTATGATTGATTTTAACCAAAAATGAAA
8466484 AAGATTTTTG-TTTAAAATCATTTA
130 AAGA-TTTTGATTTAAAATCATTTA
8466508 AAGCGAGTAA
Statistics
Matches: 1362, Mismatches: 266, Indels: 102
0.79 0.15 0.06
Matches are distributed among these distances:
498 2 0.00
499 151 0.11
500 55 0.04
501 4 0.00
502 1 0.00
504 66 0.05
505 71 0.05
506 264 0.19
507 11 0.01
508 8 0.01
509 17 0.01
510 71 0.05
511 138 0.10
512 18 0.01
513 9 0.01
514 17 0.01
515 220 0.16
516 153 0.11
517 80 0.06
518 6 0.00
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (502 bp):
TTAAAGCGAGTAACAAGGCTTTCGATAACATGACTGACTATAAATGGACTTTTATTGTAGTGGAT
GGCATCCGCTTCATGTTTCCCAATGCAAACATCCAATTATGATTGATTTTAACCAAAAATGAAAA
AGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAA
AGGCATGACTGACTATAAATGGAATTTTCTTGTCAATGGATGACATCTGCTTCACGTTTCTTGAT
GCAAACATCCAATTATGATATGTTTTAACCAAAAATGAAAAAATATTTGATTGAAAATCATTTAT
AAGATTATAAAACCATTTAAAGTGAGTAATTAGGCTTTCGAAAGCATGAGTGTTTAAATGGACTT
TTCAATGATGGCTTCAATTCATGTTTCCCAATGCAAACATCCAATTATGATCAATTTTAACCAAA
AAAGAAAAAGATTTCAATTTAAATCATTTATAAGATTATAAAAACAT
Found at i:8466405 original size:157 final size:159
Alignment explanation
Indices: 8466107--8466411 Score: 368
Period size: 157 Copynumber: 1.9 Consensus size: 159
8466097 CCAATTCACG
* * *
8466107 TTTCCTAATGCAAACATCCAATTTTAATATGTTTGAACCAAAAATGATAAAATATTTGATTGAAA
1 TTTCCTAATACAAACATCCAATTATAATATGTTTGAACCAAAAATGAAAAAATATTTGATTGAAA
* * ** * *** *
8466172 ATCATTTATAAGTTTATGAAACCATTTAAAATGAGTAATAAGGCTTTCGAAGGCATGAGTCACTT
66 ATCATTTATAAGATTATAAAACCATTTAAAACAAGTAACAAGGCTTTCGAAGGCATGACAAACTA
*
8466237 TCAATGAACTTTTCTTGTCTATTGATCGC
131 TAAATGAACTTTTCTTGTCTATTGATCGC
*
8466266 TTTCC-AATACAAACATCCAATTATGATCAAT-TTT-AACCAAAAATGAAAAAGAT-TTTGATT-
1 TTTCCTAATACAAACATCCAATTATAAT--ATGTTTGAACCAAAAATGAAAAA-ATATTTGATTG
* * * *
8466326 TAAATCATTTATATGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTCGATGGCATGACAAA
63 AAAATCATTTATAAGATTATAAAACCATTTAAAACAAGTAACAAGGCTTTCGAAGGCATGACAAA
* *
8466391 CTATAAATGGACTTTTGTTGT
128 CTATAAATGAACTTTTCTTGT
8466412 TGATGGATGG
Statistics
Matches: 123, Mismatches: 20, Indels: 8
0.81 0.13 0.05
Matches are distributed among these distances:
157 70 0.57
158 41 0.33
159 10 0.08
160 2 0.02
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.35
Consensus pattern (159 bp):
TTTCCTAATACAAACATCCAATTATAATATGTTTGAACCAAAAATGAAAAAATATTTGATTGAAA
ATCATTTATAAGATTATAAAACCATTTAAAACAAGTAACAAGGCTTTCGAAGGCATGACAAACTA
TAAATGAACTTTTCTTGTCTATTGATCGC
Found at i:8468695 original size:170 final size:169
Alignment explanation
Indices: 8468382--8470323 Score: 1504
Period size: 170 Copynumber: 11.4 Consensus size: 169
8468372 AGGTCTCACA
* * ** *
8468382 AAAATCATTTATAAAATTCTAAAA-CATTTAAAGTGAGTGACAAGG-TTTCGATAGG-ATGAGTG
1 AAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTCGA-AGGCATGAGTG
* * * ** * * *
8468444 ACTATAAACGGACTTTTCTTCTTC-ATGGATTGCATCCG-CTTTATGTTTCCAGATACAAACATC
65 ACTATAAATGGACTTTTCTT-GTCAATGGATGGC-TTTGACTTCATGTTTCC-CATGCAAACATC
* ** * * *
8468507 CAGTTACCATCGATTTTAACCAAAACTTAAAAATATTTTGATTT
127 CAATTATGATCTATTTTAACCAAAAATGAAAAA-ATTTTGATTT
* * ** * * *
8468551 AAAATCATTGATAAGTTTATAAAACCATTTAATA-CTCGTAACAAGGCTTTCAAAGCCATGAGTT
1 AAAATCATTTATAAGATTATAAAACCATTTAA-AGCAAGTAACAAGGCTTTCGAAGGCATGAGTG
* * *
8468615 ACTATAAATTGAC-TTTCTTGTCAATGGATGGCTTTGACTTCACGTTTCTCCACGCAAACATCCA
65 ACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTGACTTCATGTTTC-CCATGCAAACATCCA
* * * ***
8468679 AGTATGATCTATTTTAACTAGAAATGAAAAACATTTTGAGAC
129 ATTATGATCTATTTTAACCAAAAATGAAAAA-ATTTTGATTT
* * * * * * *
8468721 AAAATCATTTATAAGAATATAAAACAATTTAAAAGTAAGTAACAAGGTTTTCGAAGCCACGAGTT
1 AAAATCATTTATAAGATTATAAAACCATTT-AAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTG
* * * *
8468786 ACTATAAATGGAC-TTCCTTTGTCAATGGATGGC-TTGCACTTCACGTTTTTCAATGCAAACATC
65 ACTATAAATGGACTTTTC-TTGTCAATGGATGGCTTTG-ACTTCATG-TTTCCCATGCAAACATC
* * * * * *
8468849 CAATTATGATATGTTTTAACCAGAAATAAAAAAAATTTAATTT
127 CAATTATGATCTATTTTAACCAAAAATGAAAAAATTTTGATTT
* * * * *** * * * *
8468892 GAAATCATTTATATGATTATTAAACCATTGAAAATGAGTAACAAGACTTTCAAAGGTATAAGTGA
1 AAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGA
* * * ** *
8468957 CTATAAATAGACTTTTTTTGTCAATGGATAGCATCCG-TTTCATGTTTCCCAATGCAAACATCCA
66 CTATAAATGGACTTTTCTTGTCAATGGATGGC-TTTGACTTCATGTTTCCC-ATGCAAACATCCA
*
8469021 ATTATGATCGATTTTAACCAAAAATGAAAAAGATTTTGATTT
129 ATTATGATCTATTTTAACCAAAAATGAAAAA-ATTTTGATTT
* * *
8469063 AAAATCATTTATAAGATTATAAAACCATTTAAAACGAA-TAACAAAGCTTTCGAAGGCATGATTG
1 AAAATCATTTATAAGATTATAAAACCATTTAAAGC-AAGTAACAAGGCTTTCGAAGGCATGAGTG
** * *** *
8469127 ACTATAAATGGACATTTTCTTGTCAATGGATGGCATCCG-TTTCGCATTTCCAGATGCAAACATC
65 ACTATAAATGGAC-TTTTCTTGTCAATGGATGGC-TTTGACTTCATGTTTCC-CATGCAAACATC
* * * *
8469191 AAATTATGATCTGTTTTAACCAAAAAAGAAACAAA-TTTGATTG
127 CAATTATGATCTATTTTAACCAAAAATGAAA-AAATTTTGATTT
* * **** * * *
8469234 AAAATCATTTATAAGATTATAAAACCATTTGATA-CAATTTGTTAGGCTTTTGAAGGCATTAATG
1 AAAATCATTTATAAGATTATAAAACCATTT-AAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTG
* * ** * *
8469298 ACTATAAATGAACTTTTGTTGTCAATGGATGGCACTCA-TTCCATGTTTCCTAATGCAAACATCC
65 ACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTGACTT-CATGTTTCC-CATGCAAACATCC
* * * * **
8469362 AATTATGATCAATTTTAACTAAAAA-CAAAAAGTTTCAATTT
128 AATTATGATCTATTTTAACCAAAAATGAAAAAATTTTGATTT
* *** * *
8469403 GAAGGAATTTATAAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTT-TAATGGCATGAGTG
1 AAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTCGAA-GGCATGAGTG
* * * **
8469467 ACTATAAATGGAC-TTTCTTGTCAACGAATGG-TATTCACTTCATGTTTCTTAATGCAAACATCC
65 ACTATAAATGGACTTTTCTTGTCAATGGATGGCT-TTGACTTCATGTTTC-CCATGCAAACATCC
*** * * *
8469530 AATTATGAGGGATTTTGACCAAAAAGGAAAAATATTTTGGTTT
128 AATTATGATCTATTTTAACCAAAAATGAAAAA-ATTTTGATTT
* * * * * * *
8469573 AAAATCATTTATAAGATTATAAAACTATTTAAAGCAAGTAATAAGGCTTTTGATGGGATAAAT-A
1 AAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGA
* * * * * ** * *
8469637 GCCATAAATGGACTTTCCTTTTGAATGGATAGCTTCCACTTCTAT-TTTCCTACTACAAACATCC
66 -CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTGACTTC-ATGTTTCCCA-TGCAAACATCC
* * * ** *
8469701 AA-TATTGTTCTATTTTAAACAAAAATGAAAAAAATTAAATTG
128 AATTA-TGATCTATTTTAACCAAAAATGAAAAAATTTTGATTT
* ** * * * *
8469743 AAAATCATTTATAGGATTATAAAACCATTTAAAGCAAGTAATTAGGCTTTTGAAGGTATAAGTAA
1 AAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGA
* ** * ** *
8469808 ATATAAATGGACTTTTCTTGTTGATGGATGGTTTTTG-CTTCATGTTTCTTGATCCAAACATCCA
66 CTATAAATGGACTTTTCTTGTCAATGGATGG-CTTTGACTTCATGTTTC-CCATGCAAACATCCA
* * * * * *
8469872 ATTATGATTTGTTTTAGCCAAAAATGAAAATATTTCGATTA
129 ATTATGATCTATTTTAACCAAAAATGAAAAAATTTTGATTT
* * * * * * * * *
8469913 AAAATCATTTATAAAATTATTAAACAACTTAAAGCGAGTAATAAGGCTTTCAAAGGCATAAATGA
1 AAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGA
* * * * *
8469978 CTATAAATTGACTTTTCTTGTTAATGGATGGCATTCACCTCATGTTTCCCAATGCAAACATCCAA
66 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTGACTTCATGTTTCCC-ATGCAAACATCCAA
* * * * **
8470043 ATATGGTCGATTTTGACCAAAAATGAAAGGGA-TTTGAATTT
130 TTATGATCTATTTTAACCAAAAATGAAA-AAATTTTG-ATTT
* * * *
8470084 AAAATCATTTATAAGACTGTAAAACCATTTAAAGCCAGTAACAAGGC-TTCGATGGCATGAGTGA
1 AAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGA
* * * * * *
8470148 CTATCAATGAACTTTTCTTGACAATGGATGGCATTGGCTTCATGTTTCCCATTACAAACATCCAA
66 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTGACTTCATGTTTCCCA-TGCAAACATCCAA
*** * *
8470213 TTATGAGGGATTTTAACCAAAAATGCAAAAGATTTTGGTTT
130 TTATGATCTATTTTAACCAAAAATG-AAAAAATTTTGATTT
* * * * * * * *
8470254 AAAATTATCTATAAGATTATAAAACCGTTTAAAGCAAATAACAAGCCTTTCGATGGGATGAGTAA
1 AAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGA
8470319 CTATA
66 CTATA
8470324 TGATTTGTTT
Statistics
Matches: 1412, Mismatches: 308, Indels: 104
0.77 0.17 0.06
Matches are distributed among these distances:
168 65 0.05
169 110 0.08
170 724 0.51
171 368 0.26
172 140 0.10
173 5 0.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (169 bp):
AAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGA
CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTGACTTCATGTTTCCCATGCAAACATCCAAT
TATGATCTATTTTAACCAAAAATGAAAAAATTTTGATTT
Found at i:8472638 original size:43 final size:43
Alignment explanation
Indices: 8472591--8472690 Score: 155
Period size: 43 Copynumber: 2.3 Consensus size: 43
8472581 TGTCCAATGT
* *
8472591 GGGAGTGCACATGAGCTGATGATGACTCGACTATGTGCGACTA
1 GGGAGTGCACATGAGCCGATGATGACCCGACTATGTGCGACTA
* * *
8472634 GGGAGTGCACATAAGCCGATGATGACCCGGCTATGTGCGAGTA
1 GGGAGTGCACATGAGCCGATGATGACCCGACTATGTGCGACTA
8472677 GGGAGTGCACATGA
1 GGGAGTGCACATGA
8472691 TAATGAATAA
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 51 1.00
ACGTcount: A:0.26, C:0.19, G:0.35, T:0.20
Consensus pattern (43 bp):
GGGAGTGCACATGAGCCGATGATGACCCGACTATGTGCGACTA
Found at i:8477740 original size:43 final size:43
Alignment explanation
Indices: 8477693--8477802 Score: 166
Period size: 43 Copynumber: 2.6 Consensus size: 43
8477683 GATATTGATT
*
8477693 TGGTTATGTGCGAGTAGGGAGTGCACATAAGCCGATGATGACC
1 TGGTTATGTGCGAGTAGGGAGTGCACATAACCCGATGATGACC
* *
8477736 TGGTTATGTGCGAGTAGGGAGTGCGCATAACCCGGTGATGACC
1 TGGTTATGTGCGAGTAGGGAGTGCACATAACCCGATGATGACC
* **
8477779 TAGCCATGTGCGAGTAGGGAGTGC
1 TGGTTATGTGCGAGTAGGGAGTGC
8477803 GCATGAGCTA
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 61 1.00
ACGTcount: A:0.23, C:0.17, G:0.37, T:0.23
Consensus pattern (43 bp):
TGGTTATGTGCGAGTAGGGAGTGCACATAACCCGATGATGACC
Found at i:8484071 original size:5 final size:5
Alignment explanation
Indices: 8484063--8484088 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
8484053 CTATCAAACC
8484063 TAACT TAACT TAACT TAACT TAACT T
1 TAACT TAACT TAACT TAACT TAACT T
8484089 GAGCCACACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.19, G:0.00, T:0.42
Consensus pattern (5 bp):
TAACT
Found at i:8498030 original size:170 final size:168
Alignment explanation
Indices: 8497712--8500819 Score: 1552
Period size: 171 Copynumber: 18.2 Consensus size: 168
8497702 TTTTTTGATG
* * ** *
8497712 CAAACATTCAATTATGATTGATTTTAACCAAAAAT-AGAAAAGATTTTGATTTAGCATCTTTTAT
1 CAAACATCCAATTATGATTGATTTTAACCAAAAATGA-AAAATATTTTGATTTAAAATCATTTAT
* ** * * ** *
8497776 ATGATTATAAAATTATTTAAAGCGAGTAA-TAAGACTTTCGATCGCATGAGTGACTATAAATGGG
65 AAGATTAT-AAACCATTTAAAGCAAGTAACAAAG-CTTTCGAAGGCATGAGTGACTATAAATGGA
* * * *
8497840 CTTTCATCTAAATGGATGGCATACGTTTCTCGTTTTCCCATC
128 CTTTCTTCTCAATGGATGGCATACGCTTCACG-TTTCCCATC
* *
8497882 CAAACATCCAATTATGATTGATTTTAACTAAAAATGAAAAATATTTTGATTTAAAATCATTAATA
1 CAAACATCCAATTATGATTGATTTTAACCAAAAATGAAAAATATTTTGATTTAAAATCATTTATA
* * * *
8497947 AGATTTATAAACCATGTAAAACAAGTAA-AAATCTTTCGAAGGCATAAGTGACTATAAATGGACT
66 AGA-TTATAAACCATTTAAAGCAAGTAACAAAGCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * * * *
8498011 TGACTTCTCAATCGATGGCATTCGCTTCATGTTCCCCAAC
130 T-TCTTCTCAATGGATGGCATACGCTTCACGTTTCCCATC
* * * *
8498051 GCTAACATTCAATTATGATCGATTTTAACCAAAAA-GTAAAAATATTTTCATTTAAAATCATTTA
1 -CAAACATCCAATTATGATTGATTTTAACCAAAAATG-AAAAATATTTTGATTTAAAATCATTTA
* * * * ** * * * *
8498115 TAAGCTTATAAAACTATTTAAAGTAAGCAACAAAGCTTTTAAAGGTATGAGTGATTGTAAATAGA
64 TAAGATTAT-AAACCATTTAAAGCAAGTAACAAAGCTTTCGAAGGCATGAGTGACTATAAATGGA
* * * * *
8498180 CTGTTCTTGTCATTGGATGGC-TACCACTTAACGTTTCCTAGTC
128 CT-TTCTTCTCAATGGATGGCATA-CGCTTCACGTTTCCCA-TC
* *
8498223 CAAACATCCAATTATGATCTG-TTTTAACCATAAATGAAAAATATTTGGATTTAAAATCATTTAT
1 CAAACATCCAATTATGAT-TGATTTTAACCAAAAATGAAAAATATTTTGATTTAAAATCATTTAT
* * ** * * *
8498287 AAGATTATTAAACCTTTTAACGTGAGTAAGAAGGCTTTACGCAA-GCATGAGTGATTATAAATGG
65 AAGATTA-TAAACCATTTAAAGCAAGTAACAAAGCTTT-CG-AAGGCATGAGTGACTATAAATGG
* * * ** * * * * *
8498351 ACTATTCTTGTCCATGGATGGCTTTTGATGCACATTTTCCAATA
127 ACT-TTCTTCTCAATGGATGGCATACGCTTCAC-GTTTCCCATC
* ** **
8498395 CAAATATCCAATTATGATATG-TTTTAATGAAAAATGAAAAA-AAATTGATTTAAAATCATTTAT
1 CAAACATCCAATTATGAT-TGATTTTAACCAAAAATGAAAAATATTTTGATTTAAAATCATTTAT
* * * * * *
8498458 AAGATTATTAAACAACTTAATGCAAGTAACAAAGCTTTCGAAGGCATAAGTGTCTATAAATAGAA
65 AAGATTA-TAAACCATTTAAAGCAAGTAACAAAGCTTTCGAAGGCATGAGTGACTATAAAT-GGA
* * * * * ** * * * ** *
8498523 TTTTCTTGTTAGTGGATAGTTTTCGCTTAATGTTTCTTAAC
128 CTTTCTTCTCAATGGATGGCATACGCTTCACGTTTCCCATC
* * ** * * * *
8498564 GCAAGCATCTAATTATGATCAAGTGTAACCAAAAA-GAAAAAAGATTTTGATTTAAAATCTTTTA
1 -CAAACATCCAATTATGATTGATTTTAACCAAAAATG-AAAAATATTTTGATTTAAAATCATTTA
* * * * * *
8498628 TAAGCTTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGATGGCATGAGTGAATATAGATGGA
64 TAAGATTAT-AAACCATTTAAAGCAAGTAACAAAGCTTTCGAAGGCATGAGTGACTATAAATGGA
* * * *
8498693 CTTTTCTTGTCAATGGATGGAAT-CAGCTTCATGTTTCCCGATG
128 C-TTTCTTCTCAATGGATGGCATAC-GCTTCACGTTTCCC-ATC
* * * * ** *
8498736 AAAACATCCAATTATGATAGATTTTAATCAAAACT-AAAAAGCTTTTTATTTAAAATCATTTAT-
1 CAAACATCCAATTATGATTGATTTTAACCAAAAATGAAAAATATTTTGATTTAAAATCATTTATA
* * * * *
8498799 AGATTATAAAACCATTTAAAGCGACTAACAAAGCTTTCGATGGCATGAGTTACTATAAATGGAAT
66 AGATTAT-AAACCATTTAAAGCAAGTAACAAAGCTTTCGAAGGCATGAGTGACTATAAATGG-AC
* * * * * * * ** *
8498864 TTTGTTATTAATGGTTGGCTTTCGCTTCACATTTCTTGATG
129 TTTCTTCTCAATGGATGGCATACGCTTCACGTTTC-CCATC
* * * * * ** ** *
8498905 CAGACATTCAACTATGATCTG-TTTTAGCCAAAAATGAAAAA-AATTCAACCTAAAATAATTTAT
1 CAAACATCCAATTATGAT-TGATTTTAACCAAAAATGAAAAATATTTTGATTTAAAATCATTTAT
* * * ** *
8498968 AAGATTATAAAACCAATTAAAGCGAGTAACAAGGCTTTCGCTGGTATGAGTGACTATAAATGGAT
65 AAGATTAT-AAACCATTTAAAGCAAGTAACAAAGCTTTCGAAGGCATGAGTGACTATAAATGGA-
* * * ** * ** *
8499033 TTTTGTTGTCAATGGATGGTTTTCGCTTCACGTTTCTAGATA
128 CTTTCTTCTCAATGGATGGCATACGCTTCACGTTTC-CCATC
* * * * * * ** * *
8499075 CAAACATCCCATTATAATATG-TTTTAAACAAAAATTAAAAAAAAATTCAATTTATAGTCATTTA
1 CAAACATCCAATTATGAT-TGATTTTAACCAAAAA-TGAAAAATATTTTGATTTAAAATCATTTA
* * * * * *
8499139 TAAGATTATAAAACCATTTAAAGCTAGTAA-TAAGACTTTCAAAGGCATGAATAACTATAAATGT
64 TAAGATTAT-AAACCATTTAAAGCAAGTAACAAAG-CTTTCGAAGGCATGAGTGACTATAAATGG
* * * * * * * ** *
8499203 ACATTTTTTTATTAGTAGATGGCATCCACTTCAC-TATTCTAGATG
127 AC--TTTCTTCTCAATGGATGGCATACGCTTCACGT-TTC-CCATC
* * ** * * *
8499248 GAAACATCCAATTATAAGGGATTTTAA-CAAAAGACGAAAAAGATTTTGATTTACAATCATTTAT
1 CAAACATCCAATTATGATTGATTTTAACCAAAA-ATGAAAAATATTTTGATTTAAAATCATTTAT
* * * * * *
8499312 ATGATTATAAAACCATTTAAAACGAGCAACAAGGGC-TTC-AATGGCATGAGTGACTATAAATAG
65 AAGATTAT-AAACCATTTAAAGCAAGTAACAA-AGCTTTCGAA-GGCATGAGTGACTATAAATGG
* * * * *
8499375 ACTTTTCTTTTCAATGGATGGCAT-CTACTTCACATTTTCCAATG
127 AC-TTTCTTCTCAATGGATGGCATAC-GCTTCAC-GTTTCCCATC
* * *** * * *
8499419 AAAACATCCAATTATCATTGATTTTAACTGTAAATGAAAAAGATTTTGATTCAAAATCTTTTATA
1 CAAACATCCAATTATGATTGATTTTAACCAAAAATGAAAAATATTTTGATTTAAAATCATTTATA
* * * * * *
8499484 AGATTGTAAAACCATTTAAAGCAAGTAATAAGGCTTTCCATGGCATGAATGACTATAAATGGACT
66 AGATTAT-AAACCATTTAAAGCAAGTAACAAAGCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * * * * * *
8499549 TTCGTTGTTAATAGATGGCTTTCGCTTCACATTTCTCAATG
130 TTC-TTCTCAATGGATGGCATACGCTTCACGTTTC-CCATC
* ** * * * **
8499590 CAAACATCTAGCTGTGATCTG-CTTTAGCCAAAAATGAAATCAA-A-TTCAATTTAAAATCA-TT
1 CAAACATCCAATTATGAT-TGATTTTAACCAAAAATGAAA--AATATTTTGATTTAAAATCATTT
* * * * * * * *
8499651 ATATGATTACAAAATCATTCAAAGCAAGTAA-TAAGCCATTC-AATGACATGGGTGACTATAAAT
63 ATAAGATTA-TAAACCATTTAAAGCAAGTAACAAAG-CTTTCGAA-GGCATGAGTGACTATAAAT
* * * * * * * * *
8499714 AGACTTTTGTTGTCAACGGATAGCCTTCGTTTCATGTTTCCTCATC
125 GGAC-TTTCTTCTCAATGGATGGCATACGCTTCACGTTTCC-CATC
* * ** * * **
8499760 AAAATATCCAATTATGAGGGATTTTAACCAAAAATGAAAAAGATTTTGACTTAAAATTTTTTATA
1 CAAACATCCAATTATGATTGATTTTAACCAAAAATGAAAAATATTTTGATTTAAAATCATTTATA
* * * * *
8499825 AGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGATGGCATGAGTGAC-ATATATAGACT
66 AGATTAT-AAACCATTTAAAGCAAGTAACAAAGCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * * ** * ** *
8499889 CTTGTTGTCAATGGATAGCTTTTGCTTCATGTTTCTTAATG
130 -TTCTTCTCAATGGATGGCATACGCTTCACGTTTC-CCATC
* * * * * * * *
8499930 CACACATCCAATTATGATCTG-CTGTAGCCAAAAA-CAAAATAGATTTTGACTTAAAATCATTGA
1 CAAACATCCAATTATGAT-TGATTTTAACCAAAAATGAAAA-ATATTTTGATTTAAAATCATTTA
* * ** * * * * * *
8499993 TACGATTATAAAATCATTTAAAGTGAGTAACAAGGATTTCGATGGCATTAGTGACTACAAATAGA
64 TAAGATTAT-AAACCATTTAAAGCAAGTAACAAAGCTTTCGAAGGCATGAGTGACTATAAATGGA
* * * ** *
8500058 CTTT-TCTCGTCAATGGATGGCTTTCACTTCACGTTTCATGATG
128 CTTTCT-TC-TCAATGGATGGCATACGCTTCACGTTTC-CCATC
* * * * **
8500101 CAAACATCCAATTATGATCTG-TTTTAATCAAAATTGAAAAACAGTTCAATTTAAAATCATTTAT
1 CAAACATCCAATTATGAT-TGATTTTAACCAAAAATGAAAAATATTTTGATTTAAAATCATTTAT
* * ** * ** * *
8500165 GAGATTAATAAACCAATTAAAGTGAGTAACAAGGCTTTTAAAGGCATAAGTGATTATAAATGGAC
65 AAGATT-ATAAACCATTTAAAGCAAGTAACAAAGCTTTCGAAGGCATGAGTGACTATAAATGGAC
* * * * * * * *
8500230 TATTTTGTGTTAATGGATGCCATTCGCTTCATGTTTCCTAATG
129 T-TTCT-TCTCAATGGATGGCATACGCTTCACGTTTCC-CATC
* * * * * *
8500273 CAAATATCCAATTATGATTGATTTTAACCAAAAAAAGAAATAGATGTTGATTTAAAAACATTTAT
1 CAAACATCCAATTATGATTGATTTTAACC-AAAAATGAAAAATATTTTGATTTAAAATCATTTAT
* * ** * *
8500338 ATGATTATAAAACCATTTAAGGAG-AA-TAACAAGGC-TTCGTTGGCCTAAGTGACTATAAATGG
65 AAGATTAT-AAACCATTTAA--AGCAAGTAACAAAGCTTTCGAAGGCATGAGTGACTATAAATGG
* * * * ** * * *
8500400 ACTTTTCCTATCACTAGATGGCATTTGCTTAATG-TTCGCCGATG
127 AC-TTTCTTCTCAATGGATGGCATACGCTTCACGTTTC-CC-ATC
* * * * * *
8500444 CAAATATCCAATTATGATT-ACTTTTAGCTAAAAA--AATGAAGATTTCGATTTAAAATCATTTA
1 CAAACATCCAATTATGATTGA-TTTTAACCAAAAATGAA-AAATATTTTGATTTAAAATCATTTA
* * * * * * * * * *
8500506 TAAGCTTATAAAACCATTTAAAGCGATTAGCAAGGCTTTCAAAAGAATGATTGACTATCGAATGG
64 TAAGATTAT-AAACCATTTAAAGCAAGTAACAAAGCTTTCGAAGGCATGAGTGACTAT-AAATGG
* * * * * * * *
8500571 AATTTTATTGTCAAAGGATAGCTTACG-TGTCATGTTTCCCAATG
127 -ACTTTCTTCTCAATGGATGGCATACGCT-TCACGTTTCCC-ATC
* * * * * ** *
8500615 CAAATATCCAATTATGATTTG-TTTCAACCAAAAGTGAAAAAACAATTCAATTAAAAATCATTTA
1 CAAACATCCAATTATGA-TTGATTTTAACCAAAAATG-AAAAATATTTTGATTTAAAATCATTTA
* * ** ** * * * **
8500679 TATGATTACAAAACCATTTAAAGTGA-TAATTAGGCTTTTGAAGGCATGAGTGATTATAAAAAGA
64 TAAGATTA-TAAACCATTTAAAGCAAGTAACAAAGCTTTCGAAGGCATGAGTGACTATAAATGGA
* * * * * *
8500743 CTTTTGTTGTCAATTGATGGCAT-CTGCTTCGCATTTCCCAATG
128 C-TTTCTTCTCAATGGATGGCATAC-GCTTCACGTTTCCC-ATC
* * *
8500786 CAAACATCCAATTATGATGGATTTAAAGCAAAAA
1 CAAACATCCAATTATGATTGATTTTAACCAAAAA
8500820 CAAAAAGTTA
Statistics
Matches: 2283, Mismatches: 546, Indels: 217
0.75 0.18 0.07
Matches are distributed among these distances:
167 2 0.00
168 5 0.00
169 233 0.10
170 679 0.30
171 848 0.37
172 352 0.15
173 158 0.07
174 4 0.00
175 2 0.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (168 bp):
CAAACATCCAATTATGATTGATTTTAACCAAAAATGAAAAATATTTTGATTTAAAATCATTTATA
AGATTATAAACCATTTAAAGCAAGTAACAAAGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
TCTTCTCAATGGATGGCATACGCTTCACGTTTCCCATC
Found at i:8498946 original size:341 final size:342
Alignment explanation
Indices: 8497708--8506519 Score: 4584
Period size: 341 Copynumber: 25.7 Consensus size: 342
8497698 TCATTTTTTT
* * * * ** *
8497708 GATGCAAACATTCAATTATGATTGATTTTAACCAAAAAT-AGAAAAGATTTTGATTTAGCATCTT
1 GATGAAAACATCCAATTATGATAGATTTTAATCAAAAATGA-AAAAGATTTTGATTTAAAATCAT
* ** * * **
8497772 TTATATGATTATAAAATTATTTAAAGCGAGTAA-TAAGACTTTCGATCGCATGAGTGACTATAAA
65 TTATAAGATTATAAAACCATTTAAAGCGAGTAACAAAG-CTTTCAAAGGCATGAGTGACTATAAA
** ** * * * * * * ** *
8497836 TGG-GCTTTCATCTAAATGGATGGCATACGTTTCTCGTTT-TCCCATCCAAACATCCAATTATGA
129 TGGAATTTTGTTGTTAATGGATGGCTTTCGCTTCACGTTTCT-TAATGCAAACATCCAATTATGA
* * *
8497899 T-TGATTTTAACTAAAAATG-AAAAATATTTTGATTTAAAATCATTAATAAGATT-TATAAACCA
193 TCTG-TTTTAACCAAAAATGAAAAAAGATTTTGATTTAAAATCATTTATAAGATTATA-AAACCA
* * * ** * * ** * *
8497961 TGTAAAACAAGTAA-AAATCTTTCGAAGGCATAAGTGACTATAAATGGACTTGACTTCTCAATCG
256 TTTAAAGCGAGTAACAAGGCTTTCGATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGG
* *
8498025 ATGGCATTCGCTTCATGTTCCCC
321 ATGGC-TTCGCTTCACGTTTCCC
* * ** * * * * *
8498048 AACGCTAACATTCAATTATGATCGATTTTAACCAAAAA-GTAAAAATATTTTCATTTAAAATCAT
1 GATGAAAACATCCAATTATGATAGATTTTAATCAAAAATG-AAAAAGATTTTGATTTAAAATCAT
* * ** * * * * *
8498112 TTATAAGCTTATAAAACTATTTAAAGTAAGCAACAAAGCTTTTAAAGGTATGAGTGATTGTAAAT
65 TTATAAGATTATAAAACCATTTAAAGCGAGTAACAAAGCTTTCAAAGGCATGAGTGACTATAAAT
* * * * * * ** * * * * *
8498177 AGACTGTTCTTGTCATTGGATGGCTACCACTTAACGTTTCCTAGTCCAAACATCCAATTATGATC
130 GGAATTTTGTTGTTAATGGATGGCTTTCGCTTCACGTTTCTTAATGCAAACATCCAATTATGATC
* * * * *
8498242 TGTTTTAACCATAAATG-AAAAATATTTGGATTTAAAATCATTTATAAGATTATTAAACCTTTTA
195 TGTTTTAACCAAAAATGAAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTA
* * * * * * *
8498306 ACGTGAGTAAGAAGGCTTTACGCA-AGCATGAGTGATTATAAATGGACTATTCTTGTCCATGGAT
260 AAGCGAGTAACAAGGCTTT-CG-ATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGAT
* * * * *
8498370 GGCTTTTGATGCACATTTTCC
323 GGC-TTCGCTTCACGTTTCCC
* * * **
8498391 AAT-ACAAATATCCAATTATGATATG-TTTTAATGAAAAATGAAAAA-AAATTGATTTAAAATCA
1 GATGA-AAACATCCAATTATGATA-GATTTTAATCAAAAATGAAAAAGATTTTGATTTAAAATCA
* * * * * * * *
8498453 TTTATAAGATTATTAAACAACTTAATGCAAGTAACAAAGCTTTCGAAGGCATAAGTGTCTATAAA
64 TTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAAGCTTTCAAAGGCATGAGTGACTATAAA
* * * * * * * * * *
8498518 TAGAATTTTCTTGTTAGTGGATAGTTTTCGCTTAATGTTTCTTAACGCAAGCATCTAATTATGAT
129 TGGAATTTTGTTGTTAATGGATGGCTTTCGCTTCACGTTTCTTAATGCAAACATCCAATTATGAT
* * * *
8498583 CAAG-TGTAACCAAAAA-GAAAAAAGATTTTGATTTAAAATCTTTTATAAGCTTATAAAACCATT
194 C-TGTTTTAACCAAAAATGAAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATT
* *
8498646 TAAAGCGAGTAACAAGGCTTTCGATGGCATGAGTGAATATAGATGGACTTTTCTTGTCAATGGAT
258 TAAAGCGAGTAACAAGGCTTTCGATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGAT
** *
8498711 GGAATCAGCTTCATGTTTCCC
323 GGCTTC-GCTTCACGTTTCCC
* * *
8498732 GATGAAAACATCCAATTATGATAGATTTTAATCAAAACT-AAAAAGCTTTTTATTTAAAATCATT
1 GATGAAAACATCCAATTATGATAGATTTTAATCAAAAATGAAAAAGATTTTGATTTAAAATCATT
* * * *
8498796 TAT-AGATTATAAAACCATTTAAAGCGACTAACAAAGCTTTCGATGGCATGAGTTACTATAAATG
66 TATAAGATTATAAAACCATTTAAAGCGAGTAACAAAGCTTTCAAAGGCATGAGTGACTATAAATG
* * * * * * *
8498860 GAATTTTGTTATTAATGGTTGGCTTTCGCTTCACATTTCTTGATGCAGACATTCAACTATGATCT
131 GAATTTTGTTGTTAATGGATGGCTTTCGCTTCACGTTTCTTAATGCAAACATCCAATTATGATCT
* ** ** * *
8498925 GTTTTAGCCAAAAATGAAAAAA-A-TTCAACCTAAAATAATTTATAAGATTATAAAACCAATTAA
196 GTTTTAACCAAAAATGAAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAA
* * * *
8498988 AGCGAGTAACAAGGCTTTCGCTGGTATGAGTGACTATAAATGGATTTTTGTTGTCAATGGATGGT
261 AGCGAGTAACAAGGCTTTCGATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGG-
* **
8499053 TTTCGCTTCACGTTTCTA
325 CTTCGCTTCACGTTTCCC
* * * * * * ** * *
8499071 GAT-ACAAACATCCCATTATAATATG-TTTTAAACAAAAATTAAAAAAAAATTCAATTTATAGTC
1 GATGA-AAACATCCAATTATGATA-GATTTTAATCAAAAA-TGAAAAAGATTTTGATTTAAAATC
* * * *
8499134 ATTTATAAGATTATAAAACCATTTAAAGCTAGTAA-TAAGACTTTCAAAGGCATGAATAACTATA
63 ATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAAG-CTTTCAAAGGCATGAGTGACTATA
* * * * * * * * *
8499198 AATGTACATTTTTTTATTAGTAGATGGCATCCACTTCAC-TATTC-TAGATGGAAACATCCAATT
127 AATGGA-ATTTTGTTGTTAATGGATGGCTTTCGCTTCACGT-TTCTTA-ATGCAAACATCCAATT
*** * * *
8499261 AT-AAGGGATTTTAA-CAAAAGACG-AAAAAGATTTTGATTTACAATCATTTATATGATTATAAA
189 ATGATCTG-TTTTAACCAAAA-ATGAAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAA
* * * * *
8499323 ACCATTTAAAACGAGCAACAAGGGC-TTCAATGGCATGAGTGACTATAAATAGACTTTTCTTTTC
252 ACCATTTAAAGCGAGTAACAA-GGCTTTCGATGGCATGAGTGACTATAAATGGACTTTTCTTGTC
* * * *
8499387 AATGGATGGCATCTACTTCACATTTTCC
316 AATGGATGGCTTC-GCTTCACGTTTCCC
* * * ** * *
8499415 AATGAAAACATCCAATTATCATTGATTTTAA-CTGTAAATGAAAAAGATTTTGATTCAAAATCTT
1 GATGAAAACATCCAATTATGATAGATTTTAATC-AAAAATGAAAAAGATTTTGATTTAAAATCAT
* * * * * * *
8499479 TTATAAGATTGTAAAACCATTTAAAGCAAGTAATAAGGCTTTCCATGGCATGAATGACTATAAAT
65 TTATAAGATTATAAAACCATTTAAAGCGAGTAACAAAGCTTTCAAAGGCATGAGTGACTATAAAT
* * * * * * ** *
8499544 GGACTTTCGTTGTTAATAGATGGCTTTCGCTTCACATTTCTCAATGCAAACATCTAGCTGTGATC
130 GGAATTTTGTTGTTAATGGATGGCTTTCGCTTCACGTTTCTTAATGCAAACATCCAATTATGATC
* * * ** * * * *
8499609 TGCTTTAGCCAAAAATGAAATCAA-A-TTCAATTTAAAATCA-TTATATGATTACAAAATCATTC
195 TGTTTTAACCAAAAATGAAA-AAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTT
* * * * * * * * * *
8499671 AAAGCAAGTAATAAGCCATTCAATGACATGGGTGACTATAAATAGACTTTTGTTGTCAACGGATA
259 AAAGCGAGTAACAAGGCTTTCGATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGAT-
* * *
8499736 GCCTTCGTTTCATGTTTCCTC
323 GGCTTCGCTTCACGTTTCC-C
* * ** * * **
8499757 -ATCAAAATATCCAATTATGAGGGATTTTAACCAAAAATGAAAAAGATTTTGACTTAAAATTTTT
1 GATGAAAACATCCAATTATGATAGATTTTAATCAAAAATGAAAAAGATTTTGATTTAAAATCATT
* * * * *
8499821 TATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGATGGCATGAGTGAC-ATATATA
66 TATAAGATTATAAAACCATTTAAAGCGAGTAACAAAGCTTTCAAAGGCATGAGTGACTATAAATG
* * * * * * *
8499885 GACTCTTGTTGTCAATGGATAGCTTTTGCTTCATGTTTCTTAATGCACACATCCAATTATGATCT
131 GAATTTTGTTGTTAATGGATGGCTTTCGCTTCACGTTTCTTAATGCAAACATCCAATTATGATCT
* * * * * * * * *
8499950 GCTGTAGCCAAAAA-CAAAATAGATTTTGACTTAAAATCATTGATACGATTATAAAATCATTTAA
196 GTTTTAACCAAAAATGAAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAA
* * * * * *
8500014 AGTGAGTAACAAGGATTTCGATGGCATTAGTGACTACAAATAGACTTTTCTCGTCAATGGATGGC
261 AGCGAGTAACAAGGCTTTCGATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC
* **
8500079 TTTCACTTCACGTTTCAT
326 -TTCGCTTCACGTTTCCC
* * * * * **
8500097 GATGCAAACATCCAATTATGATCTG-TTTTAATCAAAATTGAAAAACAGTTCAATTTAAAATCAT
1 GATGAAAACATCCAATTATGAT-AGATTTTAATCAAAAATGAAAAAGATTTTGATTTAAAATCAT
* * * * * * *
8500161 TTATGAGATTA-ATAAACCAATTAAAGTGAGTAACAAGGCTTTTAAAGGCATAAGTGATTATAAA
65 TTATAAGATTATA-AAACCATTTAAAGCGAGTAACAAAGCTTTCAAAGGCATGAGTGACTATAAA
* * * * *
8500225 TGGACTATTTTG-TGTTAATGGATGCCATTCGCTTCATGTTTCCTAATGCAAATATCCAATTATG
129 TGGA--ATTTTGTTGTTAATGGATGGCTTTCGCTTCACGTTTCTTAATGCAAACATCCAATTATG
* * *
8500289 AT-TGATTTTAACCAAAAA--AAGAAATAGATGTTGATTTAAAAACATTTATATGATTATAAAAC
192 ATCTG-TTTTAACCAAAAATGAA-AAA-AGATTTTGATTTAAAATCATTTATAAGATTATAAAAC
* * * * * * * * *
8500351 CATTTAAGGAGAATAACAAGGC-TTCGTTGGCCTAAGTGACTATAAATGGACTTTTCCTATCACT
254 CATTTAAAGCGAGTAACAAGGCTTTCGATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAAT
* * * *
8500415 AGATGGCATTTGCTTAATG-TTCGCC
319 GGATGGC-TTCGCTTCACGTTTC-CC
* * * * * *
8500440 GATGCAAATATCCAATTATGATTA-CTTTT-AGCTAAAAA--AATGAAGATTTCGATTTAAAATC
1 GATGAAAACATCCAATTATGA-TAGATTTTAATC-AAAAATGAA-AAAGATTTTGATTTAAAATC
* * * * * * * *
8500501 ATTTATAAGCTTATAAAACCATTTAAAGCGATTAGCAAGGCTTTCAAAAGAATGATTGACTATCG
63 ATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAAGCTTTCAAAGGCATGAGTGACTAT-A
* * * * * * ** *
8500566 AATGGAATTTTATTGTCAAAGGATAGCTTACG-TGTCATGTTTCCCAATGCAAATATCCAATTAT
127 AATGGAATTTTGTTGTTAATGGATGGCTTTCGCT-TCACGTTTCTTAATGCAAACATCCAATTAT
* * * * * ** * * *
8500630 GATTTGTTTCAACCAAAAGTGAAAAAACAATTCAATTAAAAATCATTTATATGATTACAAAACCA
191 GATCTGTTTTAACCAAAAATGAAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCA
* ** * * * ** * *
8500695 TTTAAAGTGA-TAATTAGGCTTTTGAAGGCATGAGTGATTATAAAAAGACTTTTGTTGTCAATTG
256 TTTAAAGCGAGTAACAAGGCTTTCGATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGG
* * *
8500759 ATGGCATCTGCTTCGCATTTCCC
321 ATGGCTTC-GCTTCACGTTTCCC
* * * * * * *
8500782 AATGCAAACATCCAATTATGATGGATTTAAAGCAAAAA-CAAAAAG-TTATGATTTTAAAA-CAA
1 GATGAAAACATCCAATTATGATAGATTTTAATCAAAAATGAAAAAGATTTTGA-TTTAAAATC--
* * * * * * * *
8500844 ACGGCTTTTGCCTACGTTTCCCAATGCAAACATCCAGTTATGATTTGTTTTAACCAAAAATGAAA
63 A-----TTT--ATAAGATT----AT--AAA-A-CCA-TT-T-A-------AAGC---GAGT-AAC
* * ** * * * * ** **
8500909 AAAACTTCAATTTAAAATCATTTA-TAAGATTATAAAACCACTTAACACGAGTAATGAGGCTTTC
99 AAAGC-T---TTCAAAGGCA-TGAGT--GACTAT--AA--A--T----GGAATTTTGTTG--TT-
* * * ** * * ** * * **
8500973 AAAGGCATAAGTGATTATAAG-TGGACTTTTCTT-GT-CAATGGATGGC-ATTCTCTTCATGTTT
144 AATGG-AT--G-GCTT-T-CGCTTCACGTTTCTTAATGCAA-ACAT-CCAATTATGATC-TGTTT
* ** * ** * ** * * *
8501034 TCCAATGCAAACTTCTAATTATGA-TCAGTTTTAACCCAA-AATAAAAAAGATGTCAATTTAAAA
200 T--AA-CCAAAAAT-GAAAAAAGATTTTGATTTAA---AATCAT--T-------T--A--T-AA-
* **
8501097 TCATTTATAAGATTGTAAAACCATTTAAAGTAAGTAACAAGGCTGTT-GATGGCATGAGTGACTA
243 ----------GATTATAAAACCATTTAAAGCGAGTAACAAGGCT-TTCGATGGCATGAGTGACTA
* * * *
8501161 TAAATGAACTTTTCTTGTCAGTGGAT-GATATC-CATTTCATGTTTCCC
297 TAAATGGACTTTTCTTGTCAATGGATGGCT-TCGC--TTCACGTTTCCC
* * *
8501208 AAT-ACAAACATCCAATTATGATTGATTTT-ATCTAAAACATG-AAAAGATTTTGATTTATAATC
1 GATGA-AAACATCCAATTATGATAGATTTTAATC-AAAA-ATGAAAAAGATTTTGATTTAAAATC
* * * * *
8501270 ATCTATAAGATTATAAAACCATTTAAGGTGAGTAACAAGGCTTTCAATGGCATGAGTGACTATAA
63 ATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAAGCTTTCAAAGGCATGAGTGACTATAA
* ** *** * * * * *
8501335 ATGGACTTTTCATCCCAATGGATGGCATTCGTTTCTCGTTACTTGAA-GCAAACAACCAATTATG
128 ATGGAATTTTGTTGTTAATGGATGGCTTTCGCTTCACGTTTCTT-AATGCAAACATCCAATTATG
* * * *
8501399 AT-TGATTTTAACCAAAATTG-AAAAATATTTTGATATAAAATCATTGATAAGATTATAAAACCA
192 ATCTG-TTTTAACCAAAAATGAAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCA
* * * * ** * ***
8501462 TTTAAAGTGACTAACTAGGCGTTCGAAAGCATGAGTGACTATAAATAGACTTTT-TTCAAAATGG
256 TTTAAAGCGAGTAACAAGGCTTTCGATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGG
* * **
8501526 ATGGTATTCGCTTCAAGTTTCTT
321 ATGG-CTTCGCTTCACGTTTCCC
* * * ** *
8501549 GATGAAAACATCCAATTATGATTGATTTTAA-C-CAAA--AAAAATA-TTTCCTTTAAAATCTTT
1 GATGAAAACATCCAATTATGATAGATTTTAATCAAAAATGAAAAAGATTTTGATTTAAAATCATT
* * * * * * * * *
8501609 TATAAGATTATAAAACTATTTAAAGTGAGTAAGAAGGCTTTCAAATGTATTAATGACTATAAATA
66 TATAAGATTATAAAACCATTTAAAGCGAGTAACAAAGCTTTCAAAGGCATGAGTGACTATAAATG
* * * * ** * * * * *
8501674 GACTTTTCTTATTAATAGATGGCTTTTACTTCACGTTTCCTAATGAAAACATCTAATTTTGTTCT
131 GAATTTTGTTGTTAATGGATGGCTTTCGCTTCACGTTTCTTAATGCAAACATCCAATTATGATCT
* ** * ** * ** * *
8501739 GTTTAAAGTAGAAATGAAAAAA-AAATTGATTGAAAAT-ATGTTATAAGATTATTGAACCACTTG
196 GTTTTAACCAAAAATGAAAAAAGATTTTGATTTAAAATCAT-TTATAAGATTATAAAACCATTTA
* * * * * * *
8501802 ATGTGAGTAACAAGGCTTTCGAAGTCATGAGTAACTATAAATGGACTATTCTTGTCCATGGATGG
260 AAGCGAGTAACAAGGCTTTCGATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGG
* *
8501867 CTTTTGCTCCACGCTTT-CC
325 C-TTCGCTTCACG-TTTCCC
* * * * *
8501886 AATGCAAACATCCAATTAT-TTTGAATTTTAACCAAAAATGAAAAAGATTCTT-ATTTAAAATCA
1 GATGAAAACATCCAATTATGATAG-ATTTTAATCAAAAATGAAAAAGATT-TTGATTTAAAATCA
* * * *
8501949 TTTATAAGATTATAAAATCATTTAAAGTGAATAA-AAAGGCTTTCAATGGCATGAGTGACTATAA
64 TTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAA-GCTTTCAAAGGCATGAGTGACTATAA
* * * * *** * * *
8502013 ATGG-ATTTTTTTCTCAATGGATGGCATTCGCTTTTTGTTT-TTCAATGGAAACAGCTAATTATG
128 ATGGAATTTTGTTGTTAATGGATGGCTTTCGCTTCACGTTTCTT-AATGCAAACATCCAATTATG
* * * * * *
8502076 AT-TGATTTTAACCAGAAA--CAAAAAGTATTTTGATTTAACATCATTGATAAGTTTTTAAAACC
192 ATCTG-TTTTAACCAAAAATGAAAAAAG-ATTTTGATTTAAAATCATTTATAAGATTATAAAACC
* * * * *
8502138 ATCTAAAGCGAGTAATAAGG-TTTACGAAGGCATGAGTGACTGTAAATGGACTTTTTTTTGTCAA
255 ATTTAAAGCGAGTAACAAGGCTTT-CGATGGCATGAGTGACTATAAATGGAC-TTTTCTTGTCAA
* * **
8502202 TTGG-TGGCTTTTGCTTCACATTTCAT
318 -TGGATGGC-TTCGCTTCACGTTTCCC
* * * * ** * *
8502228 GGTGCAAACATCCAATTATGATATG-TTCTAATTAGTAATGAAAAAAACTTTTGAATTAAAATCA
1 GATGAAAACATCCAATTATGATA-GATTTTAATCAAAAATGAAAAAGA-TTTTGATTTAAAATCA
** * * * * **
8502292 TTTATAAGATTATTCAACCACTTAAAGTGAGTAATAAGGCTTTTGAAGGCATGAGTG--------
64 TTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAAGCTTTCAAAGGCATGAGTGACTATAAA
** * * * * * * * * * *
8502349 -GCCA-TTT-TTATCAATGGATGCCATCCGCTTCATGTTTCCTAATGAAAATATCCAATTATGGT
129 TGGAATTTTGTTGTTAATGGATGGCTTTCGCTTCACGTTTCTTAATGCAAACATCCAATTATGAT
** ** *
8502411 CAATTTTAACC-AAAA-GCAAAAAAGATTTCAATTTAAAATCATTTATAAGATTATAAAATCATT
194 CTGTTTTAACCAAAAATG-AAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATT
* * * *
8502474 TAGAGCGAGTAACAAGG-TGTT-GTTTGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGA
258 TAAAGCGAGTAACAAGGCT-TTCGATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGA
** *
8502537 TGGCATTCGCTTCATATTTCCT
322 TGGC-TTCGCTTCACGTTTCCC
* * * * * * *
8502559 AATGAAAATATCCTATTATGATTA-ATTAT-ATGCAAAAA-CAACAGAGATTTTGATTCAAAATC
1 GATGAAAACATCCAATTATGA-TAGATTTTAAT-CAAAAATGAA-AAAGATTTTGATTTAAAATC
* * * * * *
8502621 ATTTATAAGATTTTAAAACCATTTAAAGTGATTAACAAGGCTTTCAAAGGAATGACTGACTATAA
63 ATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAAGCTTTCAAAGGCATGAGTGACTATAA
* * * * * * *
8502686 ATGGAATTTTCTTGTCAATGGATGGCTTTCGCGTCATGTCTCTTTATGCAAACATCCAATTAAGA
128 ATGGAATTTTGTTGTTAATGGATGGCTTTCGCTTCACGTTTCTTAATGCAAACATCCAATTATGA
* * * * *
8502751 TAC-GTTTCAACAAAAAAATG-AAAAAGCTATCT-ATTGAAAATCATTTATAAGATTATAAAACC
193 T-CTGTTTTAAC-CAAAAATGAAAAAAGAT-TTTGATTTAAAATCATTTATAAGATTATAAAACC
* ** * * * *
8502813 ATTTAAAGCGAATAATTAGGCTTTCG-TAAGCATGAGTCACTATAAATAGACTTTTGTTGTCAAT
255 ATTTAAAGCGAGTAACAAGGCTTTCGAT-GGCATGAGTGACTATAAATGGACTTTTCTTGTCAAT
* ** * **
8502877 GGATGCCTTTAACTTCATGTTTCTT
319 GGATGGC-TTCGCTTCACGTTTCCC
* * * ** ** * ** *
8502902 GATGTAGACATCCAACTATGATCTATTTTAGCCAAAAATGAAAAA-CTATTCCATTTAAGATCAT
1 GATGAAAACATCCAATTATGATAGATTTTAATCAAAAATGAAAAAGAT-TTTGATTTAAAATCAT
* * * * *
8502966 TTAAAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGATGGTATGAGTGACTATAAAT
65 TTATAAGATTATAAAACCATTTAAAGCGAGTAACAAAGCTTTCAAAGGCATGAGTGACTATAAAT
* * * * * **
8503031 GG-ATTTT-TATGTCAATGGATGGCATCCGTTTCACATTT-TCGGATGCAAACATCCAATTATG-
130 GGAATTTTGT-TGTTAATGGATGGCTTTCGCTTCACGTTTCT-TAATGCAAACATCCAATTATGA
* * * *
8503092 -CGGGATTTTAACCAAACATG-AAAAAGATTTTCATTTAAAATAATTTATAAGATTATAAAACCA
193 TC-TG-TTTTAACCAAAAATGAAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCA
* * *
8503155 TTTAAAGCGAGTAACAAGGC-TTCAATGGCATAAGGGACTATAAATGGACTTTTCTTGTCAATGG
256 TTTAAAGCGAGTAACAAGGCTTTCGATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGG
* * * * **
8503219 ATGGCATCCACTTCATGCTTCAT
321 ATGGC-TTCGCTTCACGTTTCCC
* * ** * * * *
8503242 GATGCAAATATCCAATTATGAGGGATTGTAA-CAAAAAAT-CAAAAGATTTAGATTTTAAATCAT
1 GATGAAAACATCCAATTATGATAGATTTTAATC-AAAAATGAAAAAGATTTTGATTTAAAATCAT
* * * ** ** * * *
8503305 TTATAAGATTATAAAACCTTTTAAAGCAAATAACTCAGCTTTTGATGGGATGAGTAACTATAAAT
65 TTATAAGATTATAAAACCATTTAAAGCGAGTAACAAAGCTTTCAAAGGCATGAGTGACTATAAAT
* * * * ** * * * *
8503370 AGACTTTTTTTCTCGATGGATAGCTTTCACTTCACGTTT-TCAGATGCAAACATCCAATTACGAT
130 GGAATTTTGTTGTTAATGGATGGCTTTCGCTTCACGTTTCTTA-ATGCAAACATCCAATTATGAT
* * * * * *
8503434 CTATTTTAAACAAAACT-AAAAAAAAATTGGA-TTAGAAATCATTTATAAGATTATAAAACCATT
194 CTGTTTTAACCAAAAATGAAAAAAGATTTTGATTTA-AAATCATTTATAAGATTATAAAACCATT
** * * * * *
8503497 TAAAGCGAGTAATTAGGCTTTTGAAGGCATGAGTCACTATAAATAGACTTTTGTTGTCAATGGAT
258 TAAAGCGAGTAACAAGGCTTTCGATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGAT
* * * ** ***
8503562 GCCTTCAACTACGTGTTTTTT
323 GGCTTC-GCTTCACGTTTCCC
* * * * ** * * * ** *
8503583 GATGTAGACATCCAACTATGATCTG-TTTTAGCCAAAAATTAAAAACAATTCCATTTAAGATCAT
1 GATGAAAACATCCAATTATGAT-AGATTTTAATCAAAAATGAAAAAGATTTTGATTTAAAATCAT
* * * * * ** * *
8503647 TTAAAAGATTATAAAACTATTTTAA---A-T---AGAG-TGTT-GATCGTATAAGTGACTATAAA
65 TTATAAGATTATAAAACCATTTAAAGCGAGTAACAAAGCT-TTCAAAGGCATGAGTGACTATAAA
* ** * * * * *
8503703 TGG-ACTTTCATGTCAATGGATGGCATCCGTTTCACGTTT-TTGGATGCAAACATCCAATTATGA
129 TGGAATTTTGTTGTTAATGGATGGCTTTCGCTTCACGTTTCTT-AATGCAAACATCCAATTATGA
** *
8503766 -GGGATTTTAACTAAAAATG-AAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCAT
193 TCTG-TTTTAACCAAAAATGAAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCAT
* * * *
8503829 TTAAAGTGAGTAACAAGGC-TTCAATGGCATGAGTGAATATATATGGACTTTTCTTGTCAATGGA
257 TTAAAGCGAGTAACAAGGCTTTCGATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGA
* * * ** *
8503893 TGGCATCCACTTCATGCGTCCT
322 TGGC-TTCGCTTCACGTTTCCC
* * ** * ** *
8503915 GATGCAAACATCTAATTATGAGGGATTGTAA-CATAAAAT-TCAAAGATTTAGATTTAAAATCAT
1 GATGAAAACATCCAATTATGATAGATTTTAATCA-AAAATGAAAAAGATTTTGATTTAAAATCAT
* ** ** ** * * * ** *
8503978 TTATAAGATTATAAAACC-TGTTAAAG-TAAAAACTCATATTTCGATGGGACAAGTAACTATAAA
65 TTATAAGATTATAAAACCAT-TTAAAGCGAGTAACAAAGCTTTCAAAGGCATGAGTGACTATAAA
* * ** * * *
8504041 T-GAACTTTTCTTCTCGATGGATAGCTTTCACTTCACGTTT-TTAGATGCAAACATCCAATTACG
129 TGGAA-TTTTGTTGTTAATGGATGGCTTTCGCTTCACGTTTCTTA-ATGCAAACATCCAATTATG
* * **
8504104 ATCTGTTTTAAACAAAACTAAGAAAAAAG-----GATTGGAAATCATTTATAAGATTATAAAACC
192 ATCTGTTTTAACCAAAA--ATGAAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACC
* * * * * * * * * *
8504164 ATTTAAAGTGAGTAACTAGGCTTTTGAAGGCATAAGTGA-AACAAATAGACTTTGCTTGTCGATG
255 ATTTAAAGCGAGTAACAAGGCTTTCGATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATG
*
8504228 GATGGCTTTCACTTCACGTTTCCC
320 GATGGC-TTCGCTTCACGTTTCCC
* * * * * *
8504252 AATGCAAACATCCAATTATGATCTG-TTGTAA-CTAGAAATGAAAAAAATTTTGATTTAAAATCA
1 GATGAAAACATCCAATTATGAT-AGATTTTAATC-AAAAATGAAAAAGATTTTGATTTAAAATCA
* * * * * *
8504315 TTTCTAAGTTTATTAAACCACTTAAAGCGAGTAACAAGGCTTTCAAAGGCATTCA-TGACTATAA
64 TTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAAGCTTTCAAAGGCA-TGAGTGACTATAA
* * * * * * * * ** * *
8504379 ATTGACTTTTCTTGTCAATGAATGG-TATCTCTTCATGTTTCCCATTACAAACAT-CAATTATGA
128 ATGGAATTTTGTTGTTAATGGATGGCTTTCGCTTCACGTTTCTTAATGCAAACATCCAATTATGA
** * ** * *
8504442 -GGGATTTTAAGCAAAAAT-ACCAAAGAATTTGATTTAAAATCATTTATAAGATTGTAAAACCAT
193 TCTG-TTTTAACCAAAAATGAAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCAT
* * * * ** * * * * *
8504505 TTGAAGCAAATAATAATACTTTC-ATTGAG-ATGAGTAACTATAAATAGACTTTTGTTCTCAATA
257 TTAAAGCGAGTAACAAGGCTTTCGA-TG-GCATGAGTGACTATAAATGGACTTTTCTTGTCAATG
* * * * **
8504568 GATAGCTTTTGCTTTATGTTTTCTA
320 GATGGC-TTCGCTTCACG-TTTCCC
* * * * * * ** **
8504593 GA-GAAAAAATCTAATTATGATCTG-TTTTAAACAAAAATGAAAAAAAATTCAATTGGAAATCAT
1 GATGAAAACATCCAATTATGAT-AGATTTTAATCAAAAATGAAAAAGATTTTGATTTAAAATCAT
** ** *
8504656 TTATAAGATTATAAAACCATTTAAAGTAAGTAA-TTAGACTTTCGAAGGCATGAGTGACTATAAA
65 TTATAAGATTATAAAACCATTTAAAGCGAGTAACAAAG-CTTTCAAAGGCATGAGTGACTATAAA
* * * * ** *
8504720 TGGACTTTTCTTGTCAATAGG-TGG-TTTCCGCTTCATGTTTCCCAGTGCAAACATCCAATTATG
129 TGGAATTTTGTTGTTAAT-GGATGGCTTT-CGCTTCACGTTTCTTAATGCAAACATCCAATTATG
* * * * * * * * *
8504783 ATCTGTTGTAACTAGAAATG-AAAAATATTTTGATGTAAAATCATTTATAAGGTTATTAAACAAC
192 ATCTGTTTTAACCAAAAATGAAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCAT
* * * * ** * * * *
8504847 TTAAAGCTAGTAATAAGGCTTTTGAAGGCACAAATGAATATAAATGGACATTTCTTGTTAATGGA
257 TTAAAGCGAGTAACAAGGCTTTCGATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGA
*
8504912 TGGCATTTGCTTCACGTTTCCC
322 TGGC-TTCGCTTCACGTTTCCC
* * * *
8504934 AATGCAAACAACTAATTATGATCA-ATTTT-ATCCAAAAATGAAAAAGATTTTGATTTAAAATCA
1 GATGAAAACATCCAATTATGAT-AGATTTTAAT-CAAAAATGAAAAAGATTTTGATTTAAAATCA
* * * * *
8504997 TTTATAAGATTACAAAACCATTTAAAGTGAGTAACAAGGCTTTCAATGGCATGAGTGACTATAGA
64 TTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAAGCTTTCAAAGGCATGAGTGACTATAAA
* * * *
8505062 TGGACA-TTTCTTGTCAATGGATGGC-ATCTGCTTCATGTTTCTTAA-GACAAACATCCAATTAT
129 TGGA-ATTTTGTTGTTAATGGATGGCTTTC-GCTTCACGTTTCTTAATG-CAAACATCCAATTAT
** * *
8505124 GA-GGGATTTTGACCAAAAATG-AAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAATC
191 GATCTG-TTTTAACCAAAAATGAAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACC
* * * * *
8505187 ATTTAAAGCGAGTAACAAGGC-TTCAATAGCATGAGTGACTATATATGGACTTTTCTTATCAATA
255 ATTTAAAGCGAGTAACAAGGCTTTCGATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATG
* ** * *
8505251 GATGGATTAACTTCATGTTTCTC
320 GATGGCTTCGCTTCACGTTTCCC
* * * * ** * * * *
8505274 AATGCAAGCATCCAATTATAAGGGATTTTAACCAAAAATGGAAAAGAGTTTGATTTAAAATTATT
1 GATGAAAACATCCAATTATGATAGATTTTAATCAAAAATGAAAAAGATTTTGATTTAAAATCATT
* * * * ** *
8505339 TATAGGATTATAAAACCATTAAAAGCAAGTAACAAGGCTTTCGATCGG-ATGAGTAACTATAAAT
66 TATAAGATTATAAAACCATTTAAAGCGAGTAACAAAGCTTTC-AAAGGCATGAGTGACTATAAAT
* * * * * * * * * *
8505403 -GAACTTTTCTTCTCAATGGATAGCTTTTGTTTCATGTTTCTTGATGCAAATATCTAATTATGAT
130 GGAA-TTTTGTTGTTAATGGATGGCTTTCGCTTCACGTTTCTTAATGCAAACATCCAATTATGAT
* * ** * *
8505467 CTGTTTTAAGCAAAAATGAATTAAA-A-TTTGATTGGAAATCATTTGTAAGGTTATAAAACCATT
194 CTGTTTTAACCAAAAATGAA-AAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATT
* ** * ** * * * **
8505530 TAAAGTGAGTAATTAGGCTTTCAAAAGTATGAGTAAATATAAATGGACTTTTCTTGTCAACAGAT
258 TAAAGCGAGTAACAAGGCTTTCGATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGAT
* * * ***
8505595 TGCTTTAGCATCACGTTTGTT
323 GGC-TTCGCTTCACGTTTCCC
* * * *** * * * * *
8505616 GACGCAAACATCTAATTATGATCTCTTCTAACCAAAAATGAAAAA-AATTTAATTGAAAATCATT
1 GATGAAAACATCCAATTATGATAGATTTTAATCAAAAATGAAAAAGATTTTGATTTAAAATCATT
** * ** * * * *
8505680 TATAAGATTATAAAACCATTTAAAGATACTAAGTAGGCTTTTAAAGGCATGAGTGACTGTAAATA
66 TATAAGATTATAAAACCATTTAAAGCGAGTAACAAAGCTTTCAAAGGCATGAGTGACTATAAATG
* * * * ** * *
8505745 GATTTTTGTTGTCAATGGATGGCATCCGCTTCTTGTTTCTTGATACAAACATCCAATTATGATC-
131 GAATTTTGTTGTTAATGGATGGCTTTCGCTTCACGTTTCTTAATGCAAACATCCAATTATGATCT
* * * ** * * *
8505809 GATTTTAACAAAAAATG-GAATATTTTTTGGTTTAAAATCATTGATAAGGTTATAAAACCATTTA
196 G-TTTTAACCAAAAATGAAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTA
* * * * * *
8505873 AAGTGAGTAACAAGTCTTTCGAAGGCATGGGTGAC-ACTAAATGGACTTTTCTTATCAATGAATG
260 AAGCGAGTAACAAGGCTTTCGATGGCATGAGTGACTA-TAAATGGACTTTTCTTGTCAATGGATG
* * ***
8505937 GCATCTGCTTCACATTTTTT
324 GCTTC-GCTTCACGTTTCCC
** * * *
8505957 GACCAAAA-ATCCAATTATTAGAGATTTTAA-CAAAAACTAAAAAAGATTTTGATTTAAAATCAT
1 GATGAAAACATCCAATTATGATAGATTTTAATCAAAAA-TGAAAAAGATTTTGATTTAAAATCAT
* * * * * * *
8506020 TTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGATTTTAATGGGATGAGTAACTATAAAT
65 TTATAAGATTATAAAACCATTTAAAGCGAGTAACAAAGCTTTCAAAGGCATGAGTGACTATAAAT
* * * * * * * * *
8506085 GTACTTTTCTTCTCAATGGATGGCTTTCACATCACATTTCTTGATGCAAACATCCAATTATGATC
130 GGAATTTTGTTGTTAATGGATGGCTTTCGCTTCACGTTTCTTAATGCAAACATCCAATTATGATC
* * ** * *
8506150 TATTTTAACC-AAAATGAAAAAA-AGTTCAATTGAAAATCATTTATAAGATTACAAAACCATTTA
195 TGTTTTAACCAAAAATGAAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTA
* * * ** * * * * * * * * *
8506213 GAGCGAATGATTAGTCTTTCGAAGTCATGAGTAACTATAAATAGATTTTTGTTGTCACTAGATGG
260 AAGCGAGTAACAAGGCTTTCGATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGG
* *
8506278 CTTTCAC-TCACGTTTCTC
325 C-TTCGCTTCACGTTTCCC
* * * * * * * ** *
8506296 AATGTAGACATCCAATGAGGATCTG-TTTTAGTCAAAAA--AATAAA-A-TCAG-TTTACAATCA
1 GATGAAAACATCCAATTATGAT-AGATTTTAATCAAAAATGAA-AAAGATTTTGATTTAAAATCA
* * * * * * *
8506355 TTTATAAGATTATAAAACCCTAT-AA---AG---CAATGCTTTCGATGGCATGAGTGATTGTAAA
64 TTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAAGCTTTCAAAGGCATGAGTGACTATAAA
* * * * * * * * * *
8506413 TGGACTTTTTTTCTCACTGAATGGCATCCGCTTCATGTTTCTTAATTC-AACATCCAATTATGAT
129 TGGAATTTTGTTGTTAATGGATGGCTTTCGCTTCACGTTTCTTAATGCAAACATCCAATTATGAT
* *
8506477 C-GATTTTAACCAAAAAT-AAAGAATATTTTGATTTAAAATCATT
194 CTG-TTTTAACCAAAAATGAAAAAAGATTTTGATTTAAAATCATT
8506520 CAAAGGCATG
Statistics
Matches: 6477, Mismatches: 1614, Indels: 773
0.73 0.18 0.09
Matches are distributed among these distances:
328 30 0.00
329 79 0.01
330 69 0.01
331 93 0.01
332 103 0.02
333 209 0.03
334 41 0.01
335 12 0.00
336 225 0.03
337 195 0.03
338 109 0.02
339 399 0.06
340 1013 0.16
341 1471 0.23
342 1292 0.20
343 596 0.09
344 187 0.03
345 4 0.00
348 3 0.00
350 5 0.00
353 2 0.00
354 3 0.00
356 4 0.00
357 1 0.00
358 3 0.00
359 2 0.00
360 1 0.00
361 1 0.00
366 2 0.00
367 2 0.00
368 5 0.00
369 6 0.00
370 6 0.00
371 4 0.00
372 7 0.00
373 14 0.00
374 8 0.00
375 4 0.00
376 8 0.00
377 4 0.00
378 9 0.00
379 1 0.00
381 6 0.00
383 1 0.00
385 1 0.00
387 6 0.00
389 3 0.00
390 5 0.00
391 7 0.00
392 2 0.00
393 10 0.00
394 11 0.00
395 11 0.00
396 3 0.00
397 7 0.00
398 12 0.00
399 4 0.00
400 2 0.00
401 2 0.00
408 1 0.00
409 2 0.00
410 2 0.00
411 4 0.00
412 1 0.00
413 4 0.00
414 1 0.00
415 2 0.00
419 5 0.00
421 2 0.00
424 1 0.00
425 23 0.00
426 84 0.01
427 14 0.00
428 6 0.00
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (342 bp):
GATGAAAACATCCAATTATGATAGATTTTAATCAAAAATGAAAAAGATTTTGATTTAAAATCATT
TATAAGATTATAAAACCATTTAAAGCGAGTAACAAAGCTTTCAAAGGCATGAGTGACTATAAATG
GAATTTTGTTGTTAATGGATGGCTTTCGCTTCACGTTTCTTAATGCAAACATCCAATTATGATCT
GTTTTAACCAAAAATGAAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAA
AGCGAGTAACAAGGCTTTCGATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC
TTCGCTTCACGTTTCCC
Found at i:8501984 original size:19 final size:20
Alignment explanation
Indices: 8501941--8501984 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
8501931 GATTCTTATT
*
8501941 TAAAATCATTTATAAGATTA
1 TAAAATCATTTATAAGATAA
8501961 TAAAATCATTTA-AAG-TGAA
1 TAAAATCATTTATAAGAT-AA
8501980 TAAAA
1 TAAAA
8501985 AGGCTTTCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 1 0.05
19 9 0.41
20 12 0.55
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.34
Consensus pattern (20 bp):
TAAAATCATTTATAAGATAA
Found at i:8504824 original size:511 final size:510
Alignment explanation
Indices: 8500859--8510399 Score: 4134
Period size: 511 Copynumber: 19.0 Consensus size: 510
8500849 TTTTGCCTAC
* * ** * **
8500859 GTTTCCCAATGCAAACATCCAGTTATGATTTG-TTTTAACCAAAAATGAAAAAA-ACTTCAATTT
1 GTTTCCC-ATGCAAACATCTAATTATGA-GGGATTTTAA-CAAAAAT-AAAAAAGAATTTGATTT
* * * * *
8500922 AAAATCATTTATAAGATTATAAAACCACTTAACACG--AGTAATGAGGCTTTCA-AAGGCATAAG
62 AAAATCATTTATAAGATTATAAAACCATTTAA-A-GTAAGTAATAAGACTTTCATGA-G-ATGAG
* * * * * * * * * *
8500984 TGATTATAAGTGGACTTTTCTTGTCAATGGATGGCATTCTCTTCATGTTTTCCA-ATGCAAACTT
123 TAACTATAAAT-GACTTTTCTTCTCAATGGATAGCTTTCGCTTCACGTTTTCTAGATGCAAACAT
* * * * * * *
8501048 CTAATTATGATCAGTTTTAACCCAAAAT-AAAAAAGATGTCAATTTAAAATCATTTATAAGATTG
187 CCAATTATGATCTGTTTTAAACAAAAATGAAAAAAAAT-TCAATTGAAAATCATTTATAAGATTA
* *
8501112 TAAAACCATTTAAAGTAAGTAACAAGGCTGTT-GATGGCATGAGTGACTATAAAT-GAACTTTTC
251 TAAAACCATTTAAAGTAAGTAACTAGGCT-TTCGAAGGCATGAGTGACTATAAATAG-ACTTTTC
* * ** * * *
8501175 TTGTCAGTGGAT-GATATCCATTTCATGTTTCCCAATACAAACATCCAATTATGAT-TGATTTTA
314 TTGTCAATGGATGGCT-TCCGCTTCATGTTTCCCAGTGCAAACATCCAATTATGATCGGATTTTA
* * * * * *
8501238 TCTAAAACATG-AAAAGATTTTGATTTATAATCATCTATAAGATTATAAAACCATTTAAGGTGAG
378 ACTAAAA-ATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCACTTAAAGCGAG
* * **
8501302 TAACAAGGCTTTCAATGGCATGAGTGACTATAAATGGACTTTTCATCCCAATGGATGGCAT-TCG
442 TAACAAGGCTTTCAAAGGCATGA-TGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCT-G
*
8501366 TTTC-T
505 CTTCAT
* ** * * * ** * * * * *
8501371 CGTTACTTGAAGCAAACAACCAATTATGATTGATTTTAACCAAAATTGAAAAATATTTTGATATA
1 -GTTTC-CCATGCAAACATCTAATTATGAGGGATTTTAA-CAAAAATAAAAAAGAATTTGATTTA
* * * * * * *
8501436 AAATCATTGATAAGATTATAAAACCATTTAAAGTGACTAACT-AGGCGTTCGA-AAGCATGAGTG
63 AAATCATTTATAAGATTATAAAACCATTTAAAGTAAGTAA-TAAGACTTTC-ATGAG-ATGAGTA
** * * * *
8501499 ACTATAAATAGACTTTT-TTCAAAATGGAT-GGTATTCGCTTCAAG-TTTCTTGATGAAAACATC
125 ACTATAAAT-GACTTTTCTTCTCAATGGATAGCT-TTCGCTTCACGTTTTCTAGATGCAAACATC
* * * * * *
8501561 CAATTATGAT-TGATTTT-AAC-CAAA--AAAAATATTTC-CTTTAAAATCTTTTATAAGATTAT
188 CAATTATGATCTG-TTTTAAACAAAAATGAAAAAAAATTCAATTGAAAATCATTTATAAGATTAT
* * ** * * * * * *
8501620 AAAACTATTTAAAGTGAGTAAGAAGGCTTTCAAATGTATTAATGACTATAAATAGACTTTTCTTA
252 AAAACCATTTAAAGTAAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTG
* * *** * * * * * * * * * *
8501685 TTAATAGATGGCTTTTACTTCACGTTTCCTAATGAAAACATCTAATTTTGTTCTG-TTTAAAGTA
317 TCAATGGATGGCTTCCGCTTCATGTTTCCCAGTGCAAACATCCAATTATGATCGGATTTTAACTA
* * ** * ** * * *
8501749 GAAATGAAAAAAAAATTGATTGAAAAT-ATGTTATAAGATTATTGAACCACTTGATGTGAGTAAC
382 AAAATGAAAAAGATTTTGATTTAAAATCAT-TTATAAGATTATAAAACCACTTAAAGCGAGTAAC
* * * * * * * *
8501813 AAGGCTTTCGAAGTCATGAGTAACTATAAATGGACTATTCTTGTCCATGGATGGCTTTTGCTCCA
446 AAGGCTTTCAAAGGCATGA-TGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTGCTTCA
*
8501878 C
510 T
* * *** * * *
8501879 GCTTTCCAATGCAAACATCCAATTATTTTGAATTTTAACCAAAAATGAAAAAG-ATTCTTATTTA
1 G-TTTCCCATGCAAACATCTAATTATGAGGGATTTTAA-CAAAAATAAAAAAGAATT-TGATTTA
* * * *
8501943 AAATCATTTATAAGATTATAAAATCATTTAAAGTGAA-TAAAAAGGCTTTCAATG-GCATGAGTG
63 AAATCATTTATAAGATTATAAAACCATTTAAAGT-AAGTAATAAGACTTTC-ATGAG-ATGAGTA
* * * *** * *
8502006 ACTATAAATGGA-TTTTTTTCTCAATGGATGGCATTCGCTTTTTGTTTT-TCA-ATGGAAACAGC
125 ACTATAAAT-GACTTTTCTTCTCAATGGATAGCTTTCGCTTCACGTTTTCT-AGATGCAAACATC
* * * * * * ** * * * * *
8502068 TAATTATGAT-TGATTTTAACCAGAAA-CAAAAAGTATTTTGATTTAACATCATTGATAAGTTTT
188 CAATTATGATCTG-TTTTAAACAAAAATGAAAAA-AAATTCAATTGAAAATCATTTATAAGATTA
* ** * *
8502131 TAAAACCATCTAAAGCGAGTAA-TAAGG-TTTACGAAGGCATGAGTGACTGTAAATGGACTTTTT
251 TAAAACCATTTAAAGTAAGTAACT-AGGCTTT-CGAAGGCATGAGTGACTATAAATAGAC-TTTT
* ** ** *** ** *
8502194 TTTGTCAATTGG-TGGCTTTTGCTTCACATTTCATGGTGCAAACATCCAATTATGATATG-TTCT
313 CTTGTCAA-TGGATGGCTTCCGCTTCATGTTTCCCAGTGCAAACATCCAATTATGATCGGATTTT
* ** * * ** *
8502257 AATTAGTAATGAAAAAAACTTTTGAATTAAAATCATTTATAAGATTATTCAACCACTTAAAGTGA
377 AACTAAAAATGAAAAAGA-TTTTGATTTAAAATCATTTATAAGATTATAAAACCACTTAAAGCGA
* ** * * * * *
8502322 GTAATAAGGCTTTTGAAGGCATGA-G--------TGGCCATTT-TTATCAATGGATGCCATCCGC
441 GTAACAAGGCTTTCAAAGGCATGATGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTGC
8502377 TTCAT
506 TTCAT
* * * * ** ** *
8502382 GTTTCCTAATGAAAATATCCAATTATG-GTCAATTTTAACCAAAAGCAAAAAAG-ATTTCAATTT
1 GTTTCC-CATGCAAACATCTAATTATGAG-GGATTTTAA-CAAAAATAAAAAAGAATTT-GATTT
* * ** * * ** * *
8502445 AAAATCATTTATAAGATTATAAAATCATTTAGAGCGAGTAACAAG-GTGTTGTTTG-CATGAGTG
62 AAAATCATTTATAAGATTATAAAACCATTTAAAGTAAGTAATAAGACT-TT-CATGAGATGAGTA
* * * ** * * *
8502508 ACTATAAATGGACTTTTCTTATCAATGGATGGCATTCGCTTCATATTTCCTA-ATGAAAATATCC
125 ACTATAAAT-GACTTTTCTTCTCAATGGATAGCTTTCGCTTCACGTTTTCTAGATGCAAACATCC
* * * ** * * * * ** * *
8502572 TATTATGAT-TAATTATATGCAAAAA-CAACAGAGATTTTGATTCAAAATCATTTATAAGATTTT
189 AATTATGATCT-GTTTTAAACAAAAATGAA-AAAAAATTCAATTGAAAATCATTTATAAGATTAT
* * * * * * * *
8502635 AAAACCATTTAAAGTGATTAACAAGGCTTTCAAAGGAATGACTGACTATAAATGGAATTTTCTTG
252 AAAACCATTTAAAGTAAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTG
* * * ** * *
8502700 TCAATGGATGGCTTTCGCGTCATGTCTCTTTA-TGCAAACATCCAATTAAGATAC-G-TTTCAAC
317 TCAATGGATGGCTTCCGCTTCATGTTTC-CCAGTGCAAACATCCAATTATGAT-CGGATTTTAAC
* * * * * *
8502762 AAAAAAATGAAAAAGCTATCT-ATTGAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAAT
380 -TAAAAATGAAAAAGAT-TTTGATTTAAAATCATTTATAAGATTATAAAACCACTTAAAGCGAGT
** * * * * * * *
8502826 AATTAGGCTTTCGTAA-GCATGAGTCACTATAAATAGACTTTTGTTGTCAATGGAT-GCCTTTAA
443 AACAAGGCTTTC-AAAGGCATGA-TGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCT-G
8502889 CTTCAT
505 CTTCAT
** * * * * *** * * ** **
8502895 GTTTCTTGATGTAGACATCCAACTATGATCTATTTTAGCCAAAAATGAAAAACTATTCCATTTAA
1 GTTTC-CCATGCAAACATCTAATTATGAGGGATTTTA-ACAAAAATAAAAAAGAATTTGATTTAA
* * ** * * *
8502960 GATCATTTAAAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGATG-GTATGAGTGAC
64 AATCATTTATAAGATTATAAAACCATTTAAAGTAAGTAATAAGACTTTC-ATGAG-ATGAGTAAC
* * * * * * *
8503024 TATAAATGGA-TTTT-TATGTCAATGGATGGCATCCGTTTCACATTTTC-GGATGCAAACATCCA
127 TATAAAT-GACTTTTCT-TCTCAATGGATAGCTTTCGCTTCACGTTTTCTAGATGCAAACATCCA
* * * ** * *
8503086 ATTATG--CGGGATTTTAACCAAACATGAAAAAGATTTTC-ATTTAAAATAATTTATAAGATTAT
190 ATTATGATC-TG-TTTTAAACAAAAATGAAAAA-AAATTCAATTGAAAATCATTTATAAGATTAT
** * * * *
8503148 AAAACCATTTAAAGCGAGTAACAAGGC-TTC-AATGGCATAAGGGACTATAAATGGACTTTTCTT
252 AAAACCATTTAAAGTAAGTAACTAGGCTTTCGAA-GGCATGAGTGACTATAAATAGACTTTTCTT
* * * * * *
8503211 GTCAATGGATGGCATCCACTTCATGCTT--CATGATGCAAATATCCAATTATGA-GGGATTGTAA
316 GTCAATGGATGGCTTCCGCTTCATGTTTCCCA-G-TGCAAACATCCAATTATGATCGGATTTTAA
* * * * ** * *
8503273 CAAAAAAT-CAAAAGATTTAGATTTTAAATCATTTATAAGATTATAAAACCTTTTAAAGCAAATA
379 CTAAAAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCACTTAAAGCGAGTA
* ** * * * * * * * * * *
8503337 ACTCA-GCTTTTGATGGGATGAGTAACTATAAATAGACTTTTTTTCTCGATGGATAGC-TTTCAC
444 AC-AAGGCTTTCAAAGGCATGA-TGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCT-GC
*
8503400 TTCAC
506 TTCAT
** * * *** * * *
8503405 GTTTTCAGATGCAAACATCCAATTACGATCTATTTTAAACAAAACTAAAAAAAAATTGGA-TTAG
1 G-TTTCCCATGCAAACATCTAATTATGAGGGATTTT-AACAAAAATAAAAAAGAATTTGATTTA-
** * * *
8503469 AAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAATTAGGCTTT--TGAAGGCATGAGTC
63 AAATCATTTATAAGATTATAAAACCATTTAAAGTAAGTAATAAGACTTTCATG-A-G-ATGAGTA
* * * * * * * *
8503532 ACTATAAATAGACTTTTGTTGTCAATGGAT-GCCTTCAAC-T-ACGTGTTTTTTGATGTAGACAT
125 ACTATAAAT-GACTTTTCTTCTCAATGGATAGCTTTC-GCTTCACGT-TTTCTAGATGCAAACAT
* ** * * * * * *
8503594 CCAACTATGATCTGTTTTAGCCAAAAATTAAAAACAATTCCATTTAAGATCATTTAAAAGATTAT
187 CCAATTATGATCTGTTTTAAACAAAAATGAAAAAAAATTCAATTGAAAATCATTTATAAGATTAT
* * ** * * * *
8503659 AAAACTATTTTAAA-T-AG--AGT--G--TT-GATCGTATAAGTGACTATAAATGGAC-TTTCAT
252 AAAACCA-TTTAAAGTAAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTT
* * * *** *
8503714 GTCAATGGATGGCATCCGTTTCACGTTT-TTGGATGCAAACATCCAATTATGA-GGGATTTTAAC
316 GTCAATGGATGGCTTCCGCTTCATGTTTCCCAG-TGCAAACATCCAATTATGATCGGATTTTAAC
* *
8503777 TAAAAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAA
380 TAAAAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCACTTAAAGCGAGTAA
* * * **
8503842 CAAGGC-TTCAATGGCATGAGTGAATATATATGGACTTTTCTTGTCAATGGATGGCATCCACTTC
445 CAAGGCTTTCAAAGGCATGA-TGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTGCTTC
8503906 AT
509 AT
** * * **
8503908 GCGTCCTGATGCAAACATCTAATTATGAGGGATTGTAACATAAAAT-TCAAAG-ATTTAGATTTA
1 GTTTCC-CATGCAAACATCTAATTATGAGGGATTTTAACA-AAAATAAAAAAGAATTT-GATTTA
* * * * **
8503971 AAATCATTTATAAGATTATAAAACC-TGTTAAAGTAA-AAACTCATA-TTTCGATGGGACAAGTA
63 AAATCATTTATAAGATTATAAAACCAT-TTAAAGTAAGTAA-TAAGACTTTC-ATGAGATGAGTA
* *
8504033 ACTATAAATGAACTTTTCTTCTCGATGGATAGCTTTCACTTCACGTTTT-TAGATGCAAACATCC
125 ACTATAAATG-ACTTTTCTTCTCAATGGATAGCTTTCGCTTCACGTTTTCTAGATGCAAACATCC
* * ** *
8504097 AATTACGATCTGTTTTAAACAAAACT-AAGAAAAAA--GGATTGGAAATCATTTATAAGATTATA
189 AATTATGATCTGTTTTAAACAAAAATGAA-AAAAAATTCAATTGAAAATCATTTATAAGATTATA
* * * * * *
8504159 AAACCATTTAAAGTGAGTAACTAGGCTTTTGAAGGCATAAGTGA-AACAAATAGACTTTGCTTGT
253 AAACCATTTAAAGTAAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGT
* * * * * * * *
8504223 CGATGGATGGCTTTCACTTCACGTTTCCCAATGCAAACATCCAATTATGATCTG-TTGTAACTAG
318 CAATGGATGGCTTCCGCTTCATGTTTCCCAGTGCAAACATCCAATTATGATCGGATTTTAACTAA
* * * *
8504287 AAATGAAAAAAATTTTGATTTAAAATCATTTCTAAGTTTATTAAACCACTTAAAGCGAGTAACAA
383 AAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCACTTAAAGCGAGTAACAA
* * * *
8504352 GGCTTTCAAAGGCATTCATGACTATAAATTGACTTTTCTTGTCAATGAATGGTATCT-CTTCAT
448 GGCTTTCAAAGGCA-TGATGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTGCTTCAT
* **
8504415 GTTTCCCATTACAAACATC-AATTATGAGGGATTTTAAGCAAAAATACCAAAGAATTTGATTTAA
1 GTTTCCCA-TGCAAACATCTAATTATGAGGGATTTTAA-CAAAAATAAAAAAGAATTTGATTTAA
* * * * *
8504479 AATCATTTATAAGATTGTAAAACCATTTGAAGCAAATAATAATACTTTCATTGAGATGAGTAACT
64 AATCATTTATAAGATTATAAAACCATTTAAAGTAAGTAATAAGACTTTCA-TGAGATGAGTAACT
* * * * * * * *
8504544 ATAAATAGACTTTTGTTCTCAATAGATAGCTTTTGCTTTATGTTTTCTAGA-GAAAAAATCTAAT
128 ATAAAT-GACTTTTCTTCTCAATGGATAGCTTTCGCTTCACGTTTTCTAGATGCAAACATCCAAT
*
8504608 TATGATCTGTTTTAAACAAAAATGAAAAAAAATTCAATTGGAAATCATTTATAAGATTATAAAAC
192 TATGATCTGTTTTAAACAAAAATGAAAAAAAATTCAATTGAAAATCATTTATAAGATTATAAAAC
* * *
8504673 CATTTAAAGTAAGTAATTAGACTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAAT
257 CATTTAAAGTAAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAAT
* * * *
8504738 AGG-TGGTTTCCGCTTCATGTTTCCCAGTGCAAACATCCAATTATGATCTG-TTGTAACTAGAAA
322 -GGATGGCTTCCGCTTCATGTTTCCCAGTGCAAACATCCAATTATGATCGGATTTTAACTAAAAA
* * * * * * *
8504801 TGAAAAATATTTTGATGTAAAATCATTTATAAGGTTATTAAACAACTTAAAGCTAGTAATAAGGC
386 TGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCACTTAAAGCGAGTAACAAGGC
** ** * * * * *
8504866 TTTTGAAGGCACAAATGAATATAAATGGACATTTCTTGTTAATGGATGGCATTTGCTTCAC
451 TTTCAAAGGCA-TGATGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTGCTTCAT
* *** * * *
8504927 GTTTCCCAATGCAAACAACTAATTATGATCAATTTTATCCAAAAATGAAAAAGATTTTGATTTAA
1 GTTTCCC-ATGCAAACATCTAATTATGAGGGATTTTA-ACAAAAATAAAAAAGAATTTGATTTAA
* * * * *
8504992 AATCATTTATAAGATTACAAAACCATTTAAAGTGAGTAACAAGGCTTTCAATG-GCATGAGTGAC
64 AATCATTTATAAGATTATAAAACCATTTAAAGTAAGTAATAAGACTTTC-ATGAG-ATGAGTAAC
* * * * * *
8505056 TATAGATGGACATTTCTTGTCAATGGATGGC-ATCTGCTTCATG-TTTCTTA-A-GACAAACATC
127 TATAAAT-GACTTTTCTTCTCAATGGATAGCTTTC-GCTTCACGTTTTC-TAGATG-CAAACATC
** * * * * ** *
8505117 CAATTATGA-GGGATTTTGACCAAAAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTAT
188 CAATTATGATCTG-TTTTAAACAAAAATGAAAAAAAATTCAATTGAAAATCATTTATAAGATTAT
* ** * * * *
8505181 AAAATCATTTAAAGCGAGTAACAAGGC-TTC-AATAGCATGAGTGACTATATATGGACTTTTCTT
252 AAAACCATTTAAAGTAAGTAACTAGGCTTTCGAA-GGCATGAGTGACTATAAATAGACTTTTCTT
* * * ** * * * ** *
8505244 ATCAATAGATGGATT-AACTTCATGTTTCTCAATGCAAGCATCCAATTAT-AAGGGATTTTAACC
316 GTCAATGGATGGCTTCCGCTTCATGTTTCCCAGTGCAAACATCCAATTATGATCGGATTTTAACT
* * * * *
8505307 AAAAATGGAAAAGAGTTTGATTTAAAATTATTTATAGGATTATAAAACCA-TTAAAAGCAAGTAA
381 AAAAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCACTT-AAAGCGAGTAA
** * * * * * * *
8505371 CAAGGCTTTCGATCGG-ATGAGTAACTATAAATGAACTTTTCTTCTCAATGGATAGCTTTTGTTT
445 CAAGGCTTTC-AAAGGCATGA-TGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTGCTT
8505435 CAT
508 CAT
** * ** ** *
8505438 GTTTCTTGATGCAAATATCTAATTATGATCTG-TTTTAAGCAAAAATGAATTAA-AATTTGATTG
1 GTTTC-CCATGCAAACATCTAATTATGA-GGGATTTTAA-CAAAAAT-AAAAAAGAATTTGATTT
* * * * * * **
8505501 GAAATCATTTGTAAGGTTATAAAACCATTTAAAGTGAGTAATTAGGCTTTCAAAAGTATGAGTAA
62 AAAATCATTTATAAGATTATAAAACCATTTAAAGTAAGTAATAAGACTTTCATGAG-ATGAGTAA
* * ** * * * * *
8505566 ATATAAATGGACTTTTCTTGTCAACAGATTGCTTTAGCATCACGTTTGT-T-GACGCAAACATCT
126 CTATAAAT-GACTTTTCTTCTCAATGGATAGCTTTCGCTTCACGTTT-TCTAGATGCAAACATCC
* * * *
8505629 AATTATGATCTCTTCTAACCAAAAATG-AAAAAAATTTAATTGAAAATCATTTATAAGATTATAA
189 AATTATGATCTGTTTTAAACAAAAATGAAAAAAAATTCAATTGAAAATCATTTATAAGATTATAA
* * ** * * *
8505693 AACCATTTAAAG-ATACTAAGTAGGCTTTTAAAGGCATGAGTGACTGTAAATAGATTTTTGTTGT
254 AACCATTTAAAGTA-AGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGT
* * ** * *
8505757 CAATGGATGGCATCCGCTTCTTGTTT-CTTGATACAAACATCCAATTATGATC-GATTTTAACAA
318 CAATGGATGGCTTCCGCTTCATGTTTCCCAG-TGCAAACATCCAATTATGATCGGATTTTAACTA
* * ** * * * * *
8505820 AAAATGGAATATTTTTTGGTTTAAAATCATTGATAAGGTTATAAAACCATTTAAAGTGAGTAACA
382 AAAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCACTTAAAGCGAGTAACA
* * * * *
8505885 AGTCTTTCGAAGGCATGGGTGAC-ACTAAATGGACTTTTCTTATCAATGAATGGCATCTGCTTCA
447 AGGCTTTCAAAGGCAT-GATGACTA-TAAATGGACTTTTCTTGTCAATGGATGGCATCTGCTT--
8505949 CAT
508 CAT
*** * * * * * *
8505952 -TTTTTGA-CCAAAAATCCAATTATTAGAGATTTTAACAAAAACTAAAAAAGATTTTGATTTAAA
1 GTTTCCCATGCAAACATCTAATTATGAGGGATTTTAACAAAAA-TAAAAAAGAATTTGATTTAAA
* * * * *
8506015 ATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGATTTTAATGGGATGAGTAACTA
65 ATCATTTATAAGATTATAAAACCATTTAAAGTAAGTAATAA-GACTTTCATGAGATGAGTAACTA
* * * * *
8506080 TAAATGTACTTTTCTTCTCAATGGATGGCTTTCACATCAC-ATTTCTTGATGCAAACATCCAATT
129 TAAATG-ACTTTTCTTCTCAATGGATAGCTTTCGCTTCACGTTTTCTAGATGCAAACATCCAATT
* * * *
8506144 ATGATCTATTTT-AACCAAAATGAAAAAAAGTTCAATTGAAAATCATTTATAAGATTACAAAACC
193 ATGATCTGTTTTAAACAAAAATGAAAAAAAATTCAATTGAAAATCATTTATAAGATTATAAAACC
* * * * * * * * * *
8506208 ATTTAGAGCGAA-TGATTAGTCTTTCGAAGTCATGAGTAACTATAAATAGATTTTTGTTGTCACT
258 ATTTAAAG-TAAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAAT
* * * * * * * * * * * *
8506272 AGATGGCTTTCAC-TCACGTTTCTCAATGTAGACATCCAATGAGGATCTG-TTTT-AGTCAAAAA
322 GGATGGCTTCCGCTTCATGTTTCCCAGTGCAAACATCCAATTATGATCGGATTTTAACT-AAAAA
** * *
8506334 --AATAAA-A-TCAG-TTTACAATCATTTATAAGATTATAAAACC-C-TATAA---AG---CAAT
386 TGAA-AAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCACTTA-AAGCGAGTAACAAG
* * * * * * * * *
8506386 GCTTTCGATGGCATGAGTGATTGTAAATGGACTTTTTTTCTCACTGAATGGCATCCGCTTCAT
449 GCTTTCAAAGGCATGA-TGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTGCTTCAT
** * * ** * * *
8506449 GTTTCTTAATTC-AACATCCAATTATGATCGATTTTAACCAAAAATAAAGAATATTTTGATTTAA
1 GTTTC-CCATGCAAACATCTAATTATGAGGGATTTTAA-CAAAAATAAAAAAGAATTTGATTTAA
* ** * * * * * *
8506513 AATCATTCA-AAG-GCAT-----GA-GT-GACT--GTAATTAGACTTTTCTTGTCA-ATG-GATA
64 AATCATTTATAAGATTATAAAACCATTTAAAGTAAGTAATAAGAC-TTTCATG--AGATGAG-TA
* ** * * * * * *
8506565 GCT-TCCACTTCAC-ATT-TGC-CAATGCA-AAC-AT--C--CA-G---T-T--AT-----CAT-
125 ACTAT--AAATGACTTTTCTTCTCAATGGATAGCTTTCGCTTCACGTTTTCTAGATGCAAACATC
** * * * * *** * *
8506607 CTGTT-TTA-----TTT----GAAAATGAAGAAAATTTTGGTTTAAAATCATTTATAAGATTATT
188 CAATTATGATCTGTTTTAAACAAAAATGAAAAAAAATTCAATTGAAAATCATTTATAAGATTATA
* * * * * * * * *
8506662 AAACCACTTAAAGCAAGTAATTAGGCTTCCAAAGGCATAAATGACTATAAACAAACTTTTCTTGT
253 AAACCATTTAAAGTAAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGT
** * * * * ** * *
8506727 CAATGGATGGCTTTTGCTTCTTGTTT-CCTGATGCCAACATCAAATTATGATATG-TTTGAACCA
318 CAATGGATGGCTTCCGCTTCATGTTTCCCAG-TGCAAACATCCAATTATGATCGGATTTTAACTA
* * * * * * *
8506790 AAAATAAAAAACA-ATTGATTTAAAATCATTTATAAGACTATAAAACCATTTAAAGTGAGTAACT
382 AAAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCACTTAAAGCGAGTAACA
* * * * * *
8506854 AGACTTT-GATGGCATGAGTGACTGTAAATGGACTTTTCTTGTCAATGGATGGCGT-TCGGTTCA
447 AGGCTTTCAAAGGCATGA-TGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCT-GCTTCA
8506917 T
510 T
* * * * **
8506918 GTTTCCAAATGCAAACAACCAATTCTGATATG-TTTTAATCAAAAAT------GAA---GA---A
1 GTTTCC-CATGCAAACATCTAATTATGA-GGGATTTTAA-CAAAAATAAAAAAGAATTTGATTTA
* * * * ** * * *
8506970 AAATCACTTATAATATTATAAAATCACTTAAAGCGAGTAACAAGGCTTTCA-AAGGCATG-G-AC
63 AAATCATTTATAAGATTATAAAACCATTTAAAGTAAGTAATAAGACTTTCATGA-G-ATGAGTA-
* * * * * * * *
8507032 GACTATAAATAGAATTTTCTTGTCAATGGATAGCATTGGCTCCAC-ATTTCTCA-ATACCAACAT
125 -ACTATAAAT-GACTTTTCTTCTCAATGGATAGCTTTCGCTTCACGTTTTCT-AGATGCAAACAT
** * ** * ** * **
8507095 CCAATTATGATCAATTTTAACCAAAAATGAAAAGGATTTTGATTGAAAATTATTTATATTATTAT
187 CCAATTATGATCTGTTTTAAACAAAAATGAAAAAAAATTCAATTGAAAATCATTTATAAGATTAT
* ** * * * * * *
8507160 GAAACCACCTAAAGTGAGTAACGAGGCTTTCGATGGCATGAGTGACTATCAGT-GAACTTTTTTT
252 AAAACCATTTAAAGTAAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATAG-ACTTTTCTT
* * * * ** * *
8507224 GTTAATGGATGGCGTACGCTTCACGTTT-CTTGATGCAAACATCCAATTCTGAT-TGATTTTAAC
316 GTCAATGGATGGCTTCCGCTTCATGTTTCCCAG-TGCAAACATCCAATTATGATCGGATTTTAAC
* * ** * * *
8507287 -AAATAACGAGAAAGATTAGGATTTAAAATCATTTATAAAATTATAAAACCATTTAAAGAGAGTA
380 TAAA-AATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCACTTAAAGCGAGTA
* * * *
8507351 ACAAGGCTTTCGATA-GCATTAGTGACAATAAATGGACATTTCTTGTCAATGGATGGCAT-TAGC
444 ACAAGGCTTTC-AAAGGCATGA-TGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCT-GC
* *
8507414 TTGAC
506 TTCAT
* * ** * * * *
8507419 ATTTCCCAAAGCAAACAT-TCAATTATGATTGATTTTAACCAAACAA-GAAAAA-CATTCGATTC
1 GTTTCCC-ATGCAAACATCT-AATTATGAGGGATTTTAA-CAAA-AATAAAAAAGAATTTGATTT
* * * * * *
8507481 AAAATCATTTATAAGATTATAAAACCGTTTAAAGTTAGTAATAAGGCTTTGATG-GAATGAATGA
62 AAAATCATTTATAAGATTATAAAACCATTTAAAGTAAGTAATAAGACTTTCATGAG-ATGAGTAA
* * * ** * * * * **
8507545 CTATAAATGTGCTTTTCATGC-CAATTGACGGCTTTAGCTTCATGTTTCCCA-ATGTGAACATCC
126 CTATAAATG-ACTTTTC-TTCTCAATGGATAGCTTTCGCTTCACGTTTTCTAGATGCAAACATCC
* * * * * * ** * * *
8507608 AATTATGACCTATGTTAACCTAAAA--AAAAAAAGTTCAATTCCAGATCATTTGTAAGATTAGAA
189 AATTATGATCTGTTTTAAACAAAAATGAAAAAAAATTCAATTGAAAATCATTTATAAGATTATAA
* * ** * * *
8507671 AATCACTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGTGTGACTATAAATAGACTTTTCTTGTC
254 AACCATTTAAAGTAAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTC
* * * * * * *
8507736 AATGGATGGCATT-TGTTTCACGTCTCCCAATGCAAACATTCAATTATGAT-GAATTTTAAC-AG
319 AATGGATGGC-TTCCGCTTCATGTTTCCCAGTGCAAACATCCAATTATGATCGGATTTTAACTA-
* * * *
8507798 AAAATGAAAAAGATTTTGATTTAAAATCATTTAGAAGATTATAACACCATTTAAAGCGAGTAATA
382 AAAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCACTTAAAGCGAGTAACA
* * * * ** ** * * *
8507863 AGGCTTTCGATGACATGAGCGACTATAAATAAACTTTTCTTCCCAGTGGATGCCAT-TCACTTCA
447 AGGCTTTCAAAGGCATGA-TGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCT-GCTTCA
*
8507927 C
510 T
** * * *
8507928 GTTT-CC-TG----------ATT-T-----A----AACATCAA-AAGAAATATTTTGATTTAAAA
1 GTTTCCCATGCAAACATCTAATTATGAGGGATTTTAACAAAAATAAAAAAGAATTTGATTTAAAA
* * * * *
8507970 TCATTGATAAGAATATAAAACCATTTAAAGTAAGTAATAAGGCTTT--TGAAGGCATAAGTGACT
66 TCATTTATAAGATTATAAAACCATTTAAAGTAAGTAATAAGACTTTCATG-A-G-ATGAGTAACT
* * * * *
8508033 ATAAATGGACTTTTCTTGTCAGTGGATAGCTTTTGCTTCACATTTCCCT--ATGCAAACATCCAA
128 ATAAAT-GACTTTTCTTCTCAATGGATAGCTTTCGCTTCACGTTT-TCTAGATGCAAACATCCAA
* ** * * *
8508096 TTATGAT-TGACTTTT-AACAAAAATGAAAATGATTTTGATTTG-AAATAATTTATAAGATTATA
191 TTATGATCTG--TTTTAAACAAAAATGAAAA-AAAATTCAATTGAAAATCATTTATAAGATTATA
* * * * * *
8508158 AAACCATTTAAAG-AGAGTAACAAGGGTTTTC-ATGGCATAAGTGACTATAAATGGACTTTTCGT
253 AAACCATTTAAAGTA-AGTAACTA-GGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTT
* ** * * * * ** * *
8508221 ATCAATGGATGGAATCCACTTC-TCGTTTCCCAATGCCAACATTCAATTATGAT-TAAATTTAAT
316 GTCAATGGATGGCTTCCGCTTCAT-GTTTCCCAGTGCAAACATCCAATTATGATCGGATTTTAAC
** * * * *
8508284 TAAAAATGATGAATATTTGGATTTAAAATCATTTATAAGATTATAAAACC-CTTTAAAGCGGGTG
380 TAAAAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCAC-TTAAAGCGAGTA
* * * * * * ** * *
8508348 ATAAGGCTTTCGAAGGCATGACTGACTACAAATGGAATTTTTTTGTCGATGTTTGGCTTTTAG-T
444 ACAAGGCTTTCAAAGGCATGA-TGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCT-GCT
8508412 TCAT
507 TCAT
* * * ** **
8508416 GTTTCCTGATGTAAACATCCAATTATGATATG-TTTTAATTAAAAT-AAAAA-AATTTGATTTAA
1 GTTTCC-CATGCAAACATCTAATTATGA-GGGATTTTAACAAAAATAAAAAAGAATTTGATTTAA
* * * * * ** * *** * **
8508478 AATTATCTATAAGATTATAAAATCATTTAAAGTGAGTAATTAGGTTTTCGAAGCCTTAAGTGGCT
64 AATCATTTATAAGATTATAAAACCATTTAAAGTAAGTAATAAGACTTTC-ATGAGATGAGTAACT
* * * * * * *
8508543 ACAAATGGACTTTTCTTATCAATGGATGGATTTTGCTTCACGTTTTCT-GATGCCAACATCAAAT
128 ATAAAT-GACTTTTCTTCTCAATGGATAGCTTTCGCTTCACGTTTTCTAGATGCAAACATCCAAT
* * * *
8508607 TATGATCTGTTTTAACCAAAAAT-AGAAAAAAA-TCAATTGAAAATGATTTATAGGATGATAAAA
192 TATGATCTGTTTTAAACAAAAATGA-AAAAAAATTCAATTGAAAATCATTTATAAGATTATAAAA
* * * * * * * *
8508670 CTATTTAAAATGAGTAACTAGGC-TTCGATGGCATGAGTGACTATAAATGGGCTTTTTTTATCAA
256 CCATTTAAAGTAAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAA
** ** * * * * * * * *
8508734 TAAATGGCTTTTGATTCACGTTTCCTAATGCGAACATCAAATTATAATCTG-TTTTAA-TCAAAA
321 TGGATGGCTTCCGCTTCATGTTTCCCAGTGCAAACATCCAATTATGATCGGATTTTAACT-AAAA
* * * *
8508797 ATGAAAAA-AATTTCAGTTTAAGATCATTTATAAGATTATAAAACCACTTAAAGCGAGTAATAAG
385 ATGAAAAAGATTTTGA-TTTAAAATCATTTATAAGATTATAAAACCACTTAAAGCGAGTAACAAG
* * * * * * * * *
8508861 GTTTTCGAAGGC---ATGCCTATAGATGAACTTTTCTTGTCAATAGATAGCAT-TCGTTTCAC
449 GCTTTCAAAGGCATGATGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCT-GCTTCAT
* * * * ** *
8508920 GTTTTTCAATACAAACATCCAATTATGATTGATTTTAACTAAAAATAAAAAAGATTTTGATTTAA
1 G-TTTCCCATGCAAACATCTAATTATGAGGGATTTTAAC-AAAAATAAAAAAGAATTTGATTTAA
* * * *
8508985 AATCATTTATAAGATTATAAAATCATTTAAAGTGAGTAACAAG-CTTTCGATG-GCATGAGT-AG
64 AATCATTTATAAGATTATAAAACCATTTAAAGTAAGTAATAAGACTTTC-ATGAG-ATGAGTAAC
* * * * * * *
8509047 TCATAAATAGACTTTTCTTGTCAATTGAT-GATTTTTGCTTCATG-TTTCTTGATGCAAACACCC
127 T-ATAAAT-GACTTTTCTTCTCAATGGATAG-CTTTCGCTTCACGTTTTCTAGATGCAAACATCC
* * * * *
8509110 AATTATGATCTATTTT-AACTGAAAAT-AAAAAAAA-TCAATTAAAAATTATTTATAAGA-TGTA
189 AATTATGATCTGTTTTAAAC-AAAAATGAAAAAAAATTCAATTGAAAATCATTTATAAGATTATA
* * * * * * *
8509171 AAACCATTGAAA-TCAAGTAACAAGGCTTTC-AA---TTGA-TGGC-AT---T-CAC--ATCATG
253 AAACCATTTAAAGT-AAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTG
** * **** * * * ** * ** *
8509223 T---T---T--C--CCAATACAAACAT-CCAAT-TATA-AT-CAATT-T--T-TAAATCAAAATG
317 TCAATGGATGGCTTCCGCTTCATGTTTCCCAGTGCAAACATCCAATTATGATCGGATTTTAACT-
* **** * * * **
8509270 AAAAAAG-TTTCGA-TTT-A----AAATCATTTGTAAGATTATAAAACCATTTAAAGTGAAAAAC
381 AAAAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCACTTAAAGCGAGTAAC
** * * * *
8509328 AAGGCTTTTGATGGCATGAGTGACTATAAATGGACTTTTCTTCTCAATGGATGGCATCCGCTTTA
446 AAGGCTTTCAAAGGCATGA-TGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTGCTTCA
8509393 T
510 T
* * *** * *
8509394 GTTTGCCAATGCAAACATCCAATTATGATCAATTTTAACCAAAAACAAAAAA-ATAGTTTCATTT
1 GTTT-CCCATGCAAACATCTAATTATGAGGGATTTTAA-CAAAAATAAAAAAGA-A-TTTGATTT
* * * * *
8509458 AAAATCATTAATAAGATTATAAAACCATTTACAGTGAGTAACAAGGA-TTTCGAAG-GCATGAGT
62 AAAATCATTTATAAGATTATAAAACCATTTAAAGTAAGTAATAA-GACTTTC-ATGAG-ATGAGT
* * * * * * *
8509521 GACTATAACTAGACTTTTCTTGTCAATGCATAG-TTTCTGCTTCACGTGTCCTA-ATGAAAACAT
124 AACTATAAAT-GACTTTTCTTCTCAATGGATAGCTTTC-GCTTCACGTTTTCTAGATGCAAACAT
** * ** * * *
8509584 CCAATTACAATAC-GTTTTAATCAAAAA-CCAAAAAAATT-AATTTAACATCAGTTATAAGATTA
187 CCAATTATGAT-CTGTTTTAAACAAAAATGAAAAAAAATTCAATTGAAAATCATTTATAAGATTA
* * * * * *
8509646 TTAAACCATTTAGAA-CAAGTAA-TAAGGCTTTCGAAGGCATGAATAACTATAAATGGAGTTTTC
251 TAAAACCATTTA-AAGTAAGTAACT-AGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTC
* ** * * *
8509709 TTGTCAATGGATGGAATT-TACATCAT-TTTCCCCTA-TGCAAACATCCAATTATGAT--AAATT
314 TTGTCAATGGATGG-CTTCCGCTTCATGTTT-CCC-AGTGCAAACATCCAATTATGATCGGATTT
** * * * * * *
8509769 TAACCCAAAATGAAAAAGATTTCGATTAAAAATCATTGATAAGATTATAAAACCATTTAATGTGA
376 TAACTAAAAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCACTTAAAGCGA
** * * * *
8509834 GTAACAAGGCTTTTGATGGCATGAGTGACTATAAATGGACTTTT-TTGTCAGTGGATGGTATTCA
441 GTAACAAGGCTTTCAAAGGCATGA-TGACTATAAATGGACTTTTCTTGTCAATGGATGGCA-TCT
*
8509898 G-TTAAT
504 GCTTCAT
* * * * ** * * ** * * *
8509904 GTTTCCTAATACAAACAACCAATTATGATTGATTTCAGCTAAAAACGAAAAACATTTTGATATAA
1 GTTTCC-CATGCAAACATCTAATTATGAGGGATTTTAAC-AAAAATAAAAAAGAATTTGATTTAA
* * * * *
8509969 AATCATTTATAAGATGAAAAAACCATTTAAAGCT-AGTAATAAGGCTTTCGATG-GCATTAGTGA
64 AATCATTTATAAGATTATAAAACCATTTAAAG-TAAGTAATAAGACTTTC-ATGAG-ATGAGTAA
* * * ** * * * * * * * * * *
8510032 CTATAAATAGACCTTGCTTGTCAATCAATGGCATTAGCTTGACATTTCCCA-ATGCAAGCTTCAA
126 CTATAAAT-GACTTTTCTTCTCAATGGATAGCTTTCGCTTCACGTTTTCTAGATGCAAACATCCA
* * * * * * * ** *
8510096 ATTATGATATACTTTTGACCAAAAATTAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAA
190 ATTATGATCT-GTTTTAAACAAAAATGAAAAAAAATTCAATTGAAAATCATTTATAAGATTATAA
* * ** * ** * *
8510161 AATCATTTAAAGCT-AGTAACAAGGCTTT--AATGGCAAAACTGAAGATAAATGGACTTTGCTTG
254 AACCATTTAAAG-TAAGTAACTAGGCTTTCGAA-GGCATGAGTGACTATAAATAGACTTTTCTTG
* * * * * * * * *
8510223 TTAATTGATGGCTTTCCGCTTCATGTTTCCTAATGCGAATATCCAATTATGATCTG-TGTTAACC
317 TCAATGGATGGC-TTCCGCTTCATGTTTCCCAGTGCAAACATCCAATTATGATCGGATTTTAACT
** * * * *
8510287 AAAAATGAAAACA-A-TTCAAGTCAAAATCATTCATGAGATTATAAAACCACTTAAAGCGAGTAA
381 AAAAATGAAAA-AGATTTTGATTTAAAATCATTTATAAGATTATAAAACCACTTAAAGCGAGTAA
* ** *
8510350 CGAGGCTTTCAAAGGTGTAAGTGACTATAAATGGACTTTTCTTGTCAATG
445 CAAGGCTTTCAAAGGCATGA-TGACTATAAATGGACTTTTCTTGTCAATG
8510400 AATGTGTAGT
Statistics
Matches: 6955, Mismatches: 1589, Indels: 968
0.73 0.17 0.10
Matches are distributed among these distances:
458 11 0.00
459 98 0.01
460 32 0.00
461 6 0.00
462 7 0.00
463 27 0.00
464 3 0.00
465 4 0.00
466 2 0.00
467 7 0.00
468 14 0.00
469 70 0.01
470 79 0.01
471 7 0.00
472 2 0.00
473 6 0.00
474 78 0.01
475 55 0.01
476 104 0.01
477 46 0.01
478 5 0.00
479 4 0.00
480 5 0.00
481 5 0.00
482 7 0.00
483 11 0.00
484 7 0.00
485 58 0.01
486 73 0.01
487 13 0.00
488 233 0.03
489 32 0.00
490 7 0.00
491 3 0.00
492 2 0.00
493 3 0.00
495 6 0.00
496 4 0.00
497 5 0.00
498 19 0.00
499 269 0.04
500 70 0.01
501 164 0.02
502 194 0.03
503 405 0.06
504 174 0.03
505 62 0.01
506 159 0.02
507 615 0.09
508 304 0.04
509 417 0.06
510 603 0.09
511 1045 0.15
512 606 0.09
513 610 0.09
514 96 0.01
515 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (510 bp):
GTTTCCCATGCAAACATCTAATTATGAGGGATTTTAACAAAAATAAAAAAGAATTTGATTTAAAA
TCATTTATAAGATTATAAAACCATTTAAAGTAAGTAATAAGACTTTCATGAGATGAGTAACTATA
AATGACTTTTCTTCTCAATGGATAGCTTTCGCTTCACGTTTTCTAGATGCAAACATCCAATTATG
ATCTGTTTTAAACAAAAATGAAAAAAAATTCAATTGAAAATCATTTATAAGATTATAAAACCATT
TAAAGTAAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGAT
GGCTTCCGCTTCATGTTTCCCAGTGCAAACATCCAATTATGATCGGATTTTAACTAAAAATGAAA
AAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCA
AAGGCATGATGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTGCTTCAT
Found at i:8506245 original size:170 final size:170
Alignment explanation
Indices: 8500867--8506519 Score: 3799
Period size: 171 Copynumber: 33.4 Consensus size: 170
8500857 ACGTTTCCCA
* * * * **
8500867 ATGCAAACATCCAGTTATGATTTGTTTTAACCAAAAATGAAAAAAACTTCAATTTAAAATCATTT
1 ATGCAAACATCCAATTATGATCTATTTTAACC-AAAATGAAAAAAATTTTGATTTAAAATCATTT
* ** * * * *
8500932 ATAAGATTATAAAACCACTTAACA-CGAGTAATGAGGCTTTCAAAGGCATAAGTGATTATAAGTG
65 ATAAGATTATAAAACCATTTAA-AGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATG
* * * **
8500996 GACTTTTCTTGTCAATGGATGGCATTCTCTTCATGTTT-TCCA
129 GACTTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTCT-TG
* * * **
8501038 ATGCAAACTTCTAATTATGATC-AGTTTTAACCCAAAAT-AAAAAAGATGTCAATTTAAAATCAT
1 ATGCAAACATCCAATTATGATCTA-TTTTAA-CCAAAATGAAAAAA-ATTTTGATTTAAAATCAT
* ** *
8501101 TTATAAGATTGTAAAACCATTTAAAGTAAGTAACAAGGCTGTT-GATGGCATGAGTGACTATAAA
63 TTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCT-TTCGAAGGCATGAGTGACTATAAA
* * * * * * ***
8501165 TGAACTTTTCTTGTCAGTGGAT-GATATCCATTTCATGTTTCCCA
127 TGGACTTTTCTTGTCAATGGATGGCT-TTCACTTCACGTTTCTTG
* * * * *
8501209 ATACAAACATCCAATTATGAT-TGATTTTATCTAAAACATG-AAAAGATTTTGATTTATAATCAT
1 ATGCAAACATCCAATTATGATCT-ATTTTAAC-CAAA-ATGAAAAAAATTTTGATTTAAAATCAT
* * *
8501272 CTATAAGATTATAAAACCATTTAAGGTGAGTAACAAGGCTTTC-AATGGCATGAGTGACTATAAA
63 TTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAA-GGCATGAGTGACTATAAA
* ** * ** * *
8501336 TGGACTTTTCATCCCAATGGATGGCATTCGTTTCTCGTTACTTG
127 TGGACTTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTCTTG
* * * *
8501380 AAGCAAACAACCAATTATGAT-TGATTTTAACCAAAATTGAAAAATATTTTGATATAAAATCATT
1 ATGCAAACATCCAATTATGATCT-ATTTTAACCAAAA-TGAAAAAAATTTTGATTTAAAATCATT
* * * * * * *
8501444 GATAAGATTATAAAACCATTTAAAGTGACTAACTAGGCGTTCGAAAGCATGAGTGACTATAAATA
64 TATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATG
*** * *
8501509 GACTTTT-TTCAAAATGGATGG-TATTCGCTTCAAGTTTCTTG
129 GACTTTTCTTGTCAATGGATGGCT-TTCACTTCACGTTTCTTG
* * ** *
8501550 ATGAAAACATCCAATTATGAT-TGATTTTAACC-AAA--AAAAATA-TTTCCTTTAAAATCTTTT
1 ATGCAAACATCCAATTATGATCT-ATTTTAACCAAAATGAAAAAAATTTTGATTTAAAATCATTT
* * * * * * * * *
8501610 ATAAGATTATAAAACTATTTAAAGTGAGTAAGAAGGCTTTCAAATGTATTAATGACTATAAATAG
65 ATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGG
* * * * * *
8501675 ACTTTTCTTATTAATAGATGGCTTTTACTTCACGTTTCCTA
130 ACTTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTCTTG
* * * * * * ** ** *
8501716 ATGAAAACATCTAATTTTGTTCTGTTTAAAGTAGAAATGAAAAAAAAATTGATTGAAAAT-ATGT
1 ATGCAAACATCCAATTATGATCTATTTTAACCA-AAATGAAAAAAATTTTGATTTAAAATCAT-T
** * * * * * *
8501780 TATAAGATTATTGAACCACTTGATGTGAGTAACAAGGCTTTCGAAGTCATGAGTAACTATAAATG
64 TATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATG
* * ** * **
8501845 GACTATTCTTGTCCATGGATGGCTTTTGCTCCACGCTTTC-CA
129 GACTTTTCTTGTCAATGGATGGCTTTCACTTCACG-TTTCTTG
** ** *
8501887 ATGCAAACATCCAATTATTTTGAATTTTAACCAAAAATGAAAAAGATTCTT-ATTTAAAATCATT
1 ATGCAAACATCCAATTATGATCTATTTTAACC-AAAATGAAAAAAATT-TTGATTTAAAATCATT
* * * *
8501951 TATAAGATTATAAAATCATTTAAAGTGAATAAAAAGGCTTTC-AATGGCATGAGTGACTATAAAT
64 TATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAA-GGCATGAGTGACTATAAAT
* * * * *** *
8502015 GGA-TTTTTTTCTCAATGGATGGCATTCGCTTTTTGTTT-TTCA
128 GGACTTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTCTT-G
* * * * * *
8502057 ATGGAAACAGCTAATTATGAT-TGATTTTAACCAGAAA-CAAAAAGTATTTTGATTTAACATCAT
1 ATGCAAACATCCAATTATGATCT-ATTTTAACCA-AAATGAAAAA-AATTTTGATTTAAAATCAT
* * * * * *
8502120 TGATAAGTTTTTAAAACCATCTAAAGCGAGTAATAAGG-TTTACGAAGGCATGAGTGACTGTAAA
63 TTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTT-CGAAGGCATGAGTGACTATAAA
* ** * *
8502184 TGGACTTTTTTTTGTCAATTGG-TGGCTTTTGCTTCACATTTCATG
127 TGGAC-TTTTCTTGTCAA-TGGATGGCTTTCACTTCACGTTTCTTG
* * * * ** * *
8502229 GTGCAAACATCCAATTATGATATGTTCTAATTAGTAATGAAAAAAACTTTTGAATTAAAATCATT
1 ATGCAAACATCCAATTATGATCTATTTTAACCA-AAATGAAAAAAA-TTTTGATTTAAAATCATT
** * * * *
8502294 TATAAGATTATTCAACCACTTAAAGTGAGTAATAAGGCTTTTGAAGGCATGA--G--------TG
64 TATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATG
* * * * * * * * * *
8502349 GCCATTT-TTATCAATGGATGCCATCCGCTTCATGTTTCCTA
129 GACTTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTCTTG
* * * * **
8502390 ATGAAAATATCCAATTATGGTCAATTTTAACCAAAA-GCAAAAAAGATTTCAATTTAAAATCATT
1 ATGCAAACATCCAATTATGATCTATTTTAACCAAAATG-AAAAAA-ATTTTGATTTAAAATCATT
* * ***
8502454 TATAAGATTATAAAATCATTTAGAGCGAGTAACAAGG-TGTT-GTTTGCATGAGTGACTATAAAT
64 TATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCT-TTCGAAGGCATGAGTGACTATAAAT
* * * ** * *
8502517 GGACTTTTCTTATCAATGGATGGCATTCGCTTCATATTTCCTA
128 GGACTTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTCTTG
* * * * ** ** * * *
8502560 ATGAAAATATCCTATTATGAT-TAATTATATGCAAAAACAACAGAGATTTTGATTCAAAATCATT
1 ATGCAAACATCCAATTATGATCT-ATTTTAACCAAAATGAA-AAAAATTTTGATTTAAAATCATT
* * * * * *
8502624 TATAAGATTTTAAAACCATTTAAAGTGATTAACAAGGCTTTCAAAGGAATGACTGACTATAAATG
64 TATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATG
* * * * * *
8502689 GAATTTTCTTGTCAATGGATGGCTTTCGCGTCATGTCTCTTT
129 GACTTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTCTTG
* * * * ** * *
8502731 ATGCAAACATCCAATTAAGATAC-GTTTCAACAAAAAAATGAAAAAGCTATCT-ATTGAAAATCA
1 ATGCAAACATCCAATTATGAT-CTATTTTAAC--CAAAATGAAAAAAAT-TTTGATTTAAAATCA
* ** *
8502794 TTTATAAGATTATAAAACCATTTAAAGCGAATAATTAGGCTTTCGTAA-GCATGAGTCACTATAA
62 TTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCG-AAGGCATGAGTGACTATAA
* * * * *
8502858 ATAGACTTTTGTTGTCAATGGATGCCTTTAACTTCATGTTTCTTG
126 ATGGACTTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTCTTG
* * * * * ** *
8502903 ATGTAGACATCCAACTATGATCTATTTTAGCCAAAAATG-AAAAACTATTCCATTTAAGATCATT
1 ATGCAAACATCCAATTATGATCTATTTTAACC-AAAATGAAAAAAAT-TTTGATTTAAAATCATT
* * *
8502967 TAAAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGATGGTATGAGTGACTATAAATG
64 TATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATG
* * ** * *
8503032 GA-TTTT-TATGTCAATGGATGGCATCCGTTTCACATTT-TCGG
129 GACTTTTCT-TGTCAATGGATGGCTTTCACTTCACGTTTCT-TG
**** * * *
8503073 ATGCAAACATCCAATTATGCGGGATTTTAACCAAACATGAAAAAGATTTTCATTTAAAATAATTT
1 ATGCAAACATCCAATTATGATCTATTTTAACCAAA-ATGAAAAAAATTTTGATTTAAAATCATTT
* *
8503138 ATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGC-TTC-AATGGCATAAGGGACTATAAATG
65 ATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAA-GGCATGAGTGACTATAAATG
* * * * *
8503201 GACTTTTCTTGTCAATGGATGGCATCCACTTCATGCTTCATG
129 GACTTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTCTTG
* *** * * * * * *
8503243 ATGCAAATATCCAATTATGAGGGATTGTAACAAAAAAT-CAAAAGATTTAGATTTTAAATCATTT
1 ATGCAAACATCCAATTATGATCTATTTTAAC-CAAAATGAAAAAAATTTTGATTTAAAATCATTT
* * * * * * * * *
8503307 ATAAGATTATAAAACCTTTTAAAGCAAATAACTCA-GCTTTTGATGGGATGAGTAACTATAAATA
65 ATAAGATTATAAAACCATTTAAAGCGAGTAAC-AAGGCTTTCGAAGGCATGAGTGACTATAAATG
* * * * *
8503371 GACTTTTTTTCTCGATGGATAGCTTTCACTTCACGTTT-TCAG
129 GACTTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTCT-TG
* * * * *
8503413 ATGCAAACATCCAATTACGATCTATTTTAAACAAAACTAAAAAAAAATTGGA-TTAGAAATCATT
1 ATGCAAACATCCAATTATGATCTATTTTAACCAAAA-TGAAAAAAATTTTGATTTA-AAATCATT
** * * *
8503477 TATAAGATTATAAAACCATTTAAAGCGAGTAATTAGGCTTTTGAAGGCATGAGTCACTATAAATA
64 TATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATG
* * * ** *
8503542 GACTTTTGTTGTCAATGGAT-GCCTTCAACTACGTGTTTTTTG
129 GACTTTTCTTGTCAATGGATGGCTTTC-ACTTCACGTTTCTTG
* * * * * * ** *
8503584 ATGTAGACATCCAACTATGATCTGTTTTAGCCAAAAATTAAAAACAA-TTCCATTTAAGATCATT
1 ATGCAAACATCCAATTATGATCTATTTTAACC-AAAATGAAAAA-AATTTTGATTTAAAATCATT
* * * * ** * *
8503648 TAAAAGATTATAAAACTATTTTAA---A-T-A-GA-G-TGTT-GATCGTATAAGTGACTATAAAT
64 TATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCT-TTCGAAGGCATGAGTGACTATAAAT
* * * **
8503704 GGAC-TTTCATGTCAATGGATGGCATCCGTTTCACGTTT-TTGG
128 GGACTTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTCTT-G
*** * *
8503746 ATGCAAACATCCAATTATGAGGGATTTTAACTAAAAATGAAAAAGATTTTGATTTAAAATCATTT
1 ATGCAAACATCCAATTATGATCTATTTTAAC-CAAAATGAAAAAAATTTTGATTTAAAATCATTT
* * *
8503811 ATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGC-TTC-AATGGCATGAGTGAATATATATG
65 ATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAA-GGCATGAGTGACTATAAATG
* * * ** *
8503874 GACTTTTCTTGTCAATGGATGGCATCCACTTCATGCGTCCTG
129 GACTTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTCTTG
* *** * * ** * *
8503916 ATGCAAACATCTAATTATGAGGGATTGTAACATAAAAT-TCAAAGATTTAGATTTAAAATCATTT
1 ATGCAAACATCCAATTATGATCTATTTTAAC-CAAAATGAAAAAAATTTTGATTTAAAATCATTT
* ** * ** * * ** *
8503980 ATAAGATTATAAAACC-TGTTAAAG-TAAAAACTCA-TATTTCGATGGGACAAGTAACTATAAAT
65 ATAAGATTATAAAACCAT-TTAAAGCGAGTAAC-AAGGCTTTCGAAGGCATGAGTGACTATAAAT
* * * *
8504042 GAACTTTTCTTCTCGATGGATAGCTTTCACTTCACGTTT-TTAG
128 GGACTTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTCTT-G
* * * ** **
8504085 ATGCAAACATCCAATTACGATCTGTTTTAAACAAAACT-AAGAAAAA--AGGATTGGAAATCATT
1 ATGCAAACATCCAATTATGATCTATTTTAACCAAAA-TGAA-AAAAATTTTGATTTAAAATCATT
* * * * * * *
8504147 TATAAGATTATAAAACCATTTAAAGTGAGTAACTAGGCTTTTGAAGGCATAAGTGA-AACAAATA
64 TATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATG
* * ***
8504211 GACTTTGCTTGTCGATGGATGGCTTTCACTTCACGTTTCCCA
129 GACTTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTCTTG
* * *
8504253 ATGCAAACATCCAATTATGATCTGTTGTAACTAGAAATGAAAAAAATTTTGATTTAAAATCATTT
1 ATGCAAACATCCAATTATGATCTATTTTAACCA-AAATGAAAAAAATTTTGATTTAAAATCATTT
* * * * * * *
8504318 CTAAGTTTATTAAACCACTTAAAGCGAGTAACAAGGCTTTCAAAGGCATTCA-TGACTATAAATT
65 ATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAAGGCA-TGAGTGACTATAAATG
* * * * **
8504382 GACTTTTCTTGTCAATGAATGG-TATCTCTTCATGTTTC-CC
129 GACTTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTCTTG
* *** * *
8504422 ATTACAAACAT-CAATTATGAGGGATTTTAAGCAAAAAT-ACCAAAGAA-TTTGATTTAAAATCA
1 A-TGCAAACATCCAATTATGATCTATTTTAA-CCAAAATGA--AAAAAATTTTGATTTAAAATCA
* * * * * ** * *
8504484 TTTATAAGATTGTAAAACCATTTGAAGCAAATAATAATACTTTC-ATTGAG-ATGAGTAACTATA
62 TTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGA-AG-GCATGAGTGACTATA
* * * * * ** * * *
8504547 AATAGACTTTTGTTCTCAATAGATAGCTTTTGCTTTATGTTTTCTAG
125 AATGGACTTTTCTTGTCAATGGATGGCTTTCACTTCACG-TTTCTTG
* * * * * * ** **
8504594 A-GAAAAAATCTAATTATGATCTGTTTTAAACAAAAATGAAAAAAAATTCAATTGGAAATCATTT
1 ATGCAAACATCCAATTATGATCTATTTT-AACCAAAATGAAAAAAATTTTGATTTAAAATCATTT
** ** *
8504658 ATAAGATTATAAAACCATTTAAAGTAAGTAATTAGACTTTCGAAGGCATGAGTGACTATAAATGG
65 ATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGG
* * **
8504723 ACTTTTCTTGTCAATAGG-TGG-TTTCCGCTTCATGTTTC-CC
130 ACTTTTCTTGTCAAT-GGATGGCTTT-CACTTCACGTTTCTTG
* * * * *
8504763 AGTGCAAACATCCAATTATGATCTGTTGTAACTAGAAATGAAAAATATTTTGATGTAAAATCATT
1 A-TGCAAACATCCAATTATGATCTATTTTAACCA-AAATGAAAAAAATTTTGATTTAAAATCATT
* * * * * * * ** * *
8504828 TATAAGGTTATTAAACAACTTAAAGCTAGTAATAAGGCTTTTGAAGGCACAAATGAATATAAATG
64 TATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATG
* * * ***
8504893 GACATTTCTTGTTAATGGATGGCATTT-GCTTCACGTTTCCCA
129 GACTTTTCTTGTCAATGGATGGC-TTTCACTTCACGTTTCTTG
* * * * *
8504935 ATGCAAACAACTAATTATGATCAATTTTATCCAAAAATGAAAAAGATTTTGATTTAAAATCATTT
1 ATGCAAACATCCAATTATGATCTATTTTAACC-AAAATGAAAAAAATTTTGATTTAAAATCATTT
* * *
8505000 ATAAGATTACAAAACCATTTAAAGTGAGTAACAAGGCTTTC-AATGGCATGAGTGACTATAGATG
65 ATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAA-GGCATGAGTGACTATAAATG
* * * *
8505064 GACATTTCTTGTCAATGGATGGC-ATCTGCTTCATGTTTCTT-
129 GACTTTTCTTGTCAATGGATGGCTTTC-ACTTCACGTTTCTTG
* *** * *
8505105 AAGACAAACATCCAATTATGAGGGATTTTGACCAAAAATGAAAAAGATTTTGATTTAAAATCATT
1 ATG-CAAACATCCAATTATGATCTATTTTAACC-AAAATGAAAAAAATTTTGATTTAAAATCATT
* * *
8505170 TATAAGATTATAAAATCATTTAAAGCGAGTAACAAGGC-TTC-AATAGCATGAGTGACTATATAT
64 TATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAA-GGCATGAGTGACTATAAAT
* * * * * **
8505233 GGACTTTTCTTATCAATAGATGG-ATTAACTTCATGTTTCTCA
128 GGACTTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTCTTG
* * *** * * * *
8505275 ATGCAAGCATCCAATTATAAGGGATTTTAACCAAAAATGGAAAAGAGTTTGATTTAAAATTATTT
1 ATGCAAACATCCAATTATGATCTATTTTAACC-AAAATGAAAAAAATTTTGATTTAAAATCATTT
* * * * *
8505340 ATAGGATTATAAAACCATTAAAAGCAAGTAACAAGGCTTTCGATCGG-ATGAGTAACTATAAATG
65 ATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGA-AGGCATGAGTGACTATAAATG
* * * *** *
8505404 AACTTTTCTTCTCAATGGATAGCTTTTGTTTCATGTTTCTTG
129 GACTTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTCTTG
* * * * * **
8505446 ATGCAAATATCTAATTATGATCTGTTTTAAGCAAAAATGAATTAAAA-TTTGATTGGAAATCATT
1 ATGCAAACATCCAATTATGATCTATTTTAA-CCAAAATGAA-AAAAATTTTGATTTAAAATCATT
* * * ** * * * * *
8505510 TGTAAGGTTATAAAACCATTTAAAGTGAGTAATTAGGCTTTCAAAAGTATGAGTAAATATAAATG
64 TATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATG
** * * *
8505575 GACTTTTCTTGTCAACAGATTGCTTT-AGCATCACGTTTGTTG
129 GACTTTTCTTGTCAATGGATGGCTTTCA-CTTCACGTTTCTTG
* * * * * *
8505617 ACGCAAACATCTAATTATGATCTCTTCTAACCAAAAATGAAAAAAA-TTTAATTGAAAATCATTT
1 ATGCAAACATCCAATTATGATCTATTTTAACC-AAAATGAAAAAAATTTTGATTTAAAATCATTT
** * ** ** * *
8505681 ATAAGATTATAAAACCATTTAAAGATACTAAGTAGGCTTTTAAAGGCATGAGTGACTGTAAATAG
65 ATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGG
* * * * * **
8505746 ATTTTTGTTGTCAATGGATGGCATCCGCTTCTTGTTTCTTG
130 ACTTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTCTTG
* * * * * ** * *
8505787 ATACAAACATCCAATTATGATCGATTTTAACAAAAAATGGAATATTTTTTGGTTTAAAATCATTG
1 ATGCAAACATCCAATTATGATCTATTTTAAC-CAAAATGAAAAAAATTTTGATTTAAAATCATTT
* * * *
8505852 ATAAGGTTATAAAACCATTTAAAGTGAGTAACAAGTCTTTCGAAGGCATGGGTGAC-ACTAAATG
65 ATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTA-TAAATG
* * * * * *
8505916 GACTTTTCTTATCAATGAATGGC-ATCTGCTTCACATTTTTTG
129 GACTTTTCTTGTCAATGGATGGCTTTC-ACTTCACGTTTCTTG
* * * *** *
8505958 A-CCAAAAATCCAATTATTAGAGATTTTAACAAAAACT-AAAAAAGATTTTGATTTAAAATCATT
1 ATGCAAACATCCAATTATGATCTATTTTAACCAAAA-TGAAAAAA-ATTTTGATTTAAAATCATT
* * * * *
8506021 TATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGATTT-TAATGGGATGAGTAACTATAAAT
64 TATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAA-GGCATGAGTGACTATAAAT
* * * *
8506085 GTACTTTTCTTCTCAATGGATGGCTTTCACATCACATTTCTTG
128 GGACTTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTCTTG
* ** *
8506128 ATGCAAACATCCAATTATGATCTATTTTAACCAAAATGAAAAAAAGTTCAATTGAAAATCATTTA
1 ATGCAAACATCCAATTATGATCTATTTTAACCAAAATGAAAAAAATTTTGATTTAAAATCATTTA
* * * * ** * * * *
8506193 TAAGATTACAAAACCATTTAGAGCGAATGATTAGTCTTTCGAAGTCATGAGTAACTATAAATAGA
66 TAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGA
* * * * **
8506258 TTTTTGTTGTCACTAGATGGCTTTCAC-TCACGTTTCTCA
131 CTTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTCTTG
* * * * * ** ** *
8506297 ATGTAGACATCCAATGAGGATCTGTTTTAGTCAAAA--AAATAAAA-TCAG-TTTACAATCATTT
1 ATGCAAACATCCAATTATGATCTATTTTAACCAAAATGAAA-AAAATTTTGATTTAAAATCATTT
* * * * * *
8506358 ATAAGATTATAAAACCCTAT-AA---AG---CAATGCTTTCGATGGCATGAGTGATTGTAAATGG
65 ATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGG
* * * * * * * * *
8506416 ACTTTTTTTCTCACTGAATGGCATCCGCTTCATGTTTCTTA
130 ACTTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTCTTG
* * *
8506457 ATTC-AACATCCAATTATGATCGATTTTAACCAAAAAT-AAAGAATATTTTGATTTAAAATCATT
1 ATGCAAACATCCAATTATGATCTATTTTAACC-AAAATGAAA-AAAATTTTGATTTAAAATCATT
8506520 CAAAGGCATG
Statistics
Matches: 4302, Mismatches: 985, Indels: 398
0.76 0.17 0.07
Matches are distributed among these distances:
159 73 0.02
160 74 0.02
161 55 0.01
162 95 0.02
163 40 0.01
164 3 0.00
165 77 0.02
166 83 0.02
167 8 0.00
168 137 0.03
169 515 0.12
170 1184 0.28
171 1656 0.38
172 221 0.05
173 78 0.02
174 3 0.00
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.34
Consensus pattern (170 bp):
ATGCAAACATCCAATTATGATCTATTTTAACCAAAATGAAAAAAATTTTGATTTAAAATCATTTA
TAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGA
CTTTTCTTGTCAATGGATGGCTTTCACTTCACGTTTCTTG
Found at i:8507323 original size:171 final size:168
Alignment explanation
Indices: 8506641--8507903 Score: 753
Period size: 171 Copynumber: 7.5 Consensus size: 168
8506631 ATTTTGGTTT
* * * ** ** * * * * *
8506641 AAAATCATTTATAAGATTATTAAACCACTTAAAGCAAGTAATTAGGCTTCCAAAGGCATAAATGA
1 AAAATCATTTATAAAATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGATGGCATGAGTGA
** * ** * *** ** * * *
8506706 CTATAAACAAACTTTTCTTGTCAATGGATGGCTTTTGCTTCTTGTTTCCTGATGCCAACATCAAA
66 CTATAAATGAACATTTCTTGTCAATGGATGGCAGTAGCTTCACATTTCCCAAAGCAAACATCCAA
* * * *
8506771 TTATGATATG-TTTGAACCAAAAATAAAAAACAATT-GATTT
131 TTATGAT-TGATTTTAACC-AAAA-AGAAAA-GATTCGATTC
* * * *
8506811 AAAATCATTTATAAGACTATAAAACCATTTAAAGTGAGTAACTAGACTTT-GATGGCATGAGTGA
1 AAAATCATTTATAAAATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGATGGCATGAGTGA
* * * * * ** *
8506875 CTGTAAATGGACTTTTCTTGTCAATGGATGGC-GTTCGGTTCATGTTT-CCAAATGCAAACAACC
66 CTATAAATGAACATTTCTTGTCAATGGATGGCAG-TAGCTTCACATTTCCCAAA-GCAAACATCC
* *
8506938 AATTCTGATATG-TTTTAATCAAAAATG---A-A---GA---
129 AATTATGAT-TGATTTTAACCAAAAA-GAAAAGATTCGATTC
* * * * * * * *
8506969 AAAATCACTTATAATATTATAAAATCACTTAAAGCGAGTAACAAGGCTTTCAAAGGCATG-GACG
1 AAAATCATTTATAAAATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGATGGCATGAG-TG
* * * * * * *
8507033 ACTATAAATAGAA-TTTTCTTGTCAATGGATAGCATTGGCTCCACATTTCTCAATA-CCAACATC
65 ACTATAAAT-GAACATTTCTTGTCAATGGATGGCAGTAGCTTCACATTTCCCAA-AGCAAACATC
** * *
8507096 CAATTATGATCAATTTTAACCAAAAATGAAAAGGATTTTGATTG
128 CAATTATGATTGATTTTAACCAAAAA-GAAAA-GA-TTCGATTC
* ** * ** *
8507140 AAAATTATTTATATTATTATGAAACCACCTAAAGTGAGTAACGAGGCTTTCGATGGCATGAGTGA
1 AAAATCATTTATAAAATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGATGGCATGAGTGA
* * * * * * *** *
8507205 CTATCAGTGAACTTTTTTTGTTAATGGATGGC-GTACGCTTCACGTTTCTTGATGCAAACATCCA
66 CTATAAATGAACATTTCTTGTCAATGGATGGCAGTA-GCTTCACATTTCCCAAAGCAAACATCCA
* * *
8507269 ATTCTGATTGATTTTAA-CAAATAACGAGAAAGATTAGGATTT
130 ATTATGATTGATTTTAACCAAA-AA-GA-AAAGATT-CGATTC
* * *
8507311 AAAATCATTTATAAAATTATAAAACCATTTAAAGAGAGTAACAAGGCTTTCGATAGCATTAGTGA
1 AAAATCATTTATAAAATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGATGGCATGAGTGA
* * * * *
8507376 CAATAAATGGACATTTCTTGTCAATGGATGGCATTAGCTTGACATTTCCCAAAGCAAACATTCAA
66 CTATAAATGAACATTTCTTGTCAATGGATGGCAGTAGCTTCACATTTCCCAAAGCAAACATCCAA
*
8507441 TTATGATTGATTTTAACCAAACAAGAAAAACATTCGATTC
131 TTATGATTGATTTTAACCAAA-AAG-AAAAGATTCGATTC
* * * * * *
8507481 AAAATCATTTATAAGATTATAAAACCGTTTAAAGTTAGTAATAAGGCTTT-GATGGAATGAATGA
1 AAAATCATTTATAAAATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGATGGCATGAGTGA
** * * * * * ** ** * **
8507545 CTATAAATGTGCTTTTCATGCCAATTGACGGCTTTAGCTTCATGTTTCCCAATGTGAACATCCAA
66 CTATAAATGAACATTTCTTGTCAATGGATGGCAGTAGCTTCACATTTCCCAAAGCAAACATCCAA
* * * *
8507610 TTATGACCT-ATGTTAACCTAAAAA-AAAAAAGTTCAATTC
131 TTATGA-TTGATTTTAACC-AAAAAGAAAAGA-TTCGATTC
* * * * * * * * * * *
8507649 CAGATCATTTGTAAGATTAGAAAATCACTTAAAGCGAGTAACAAGGCTTTCAAAGGCATGTGTGA
1 AAAATCATTTATAAAATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGATGGCATGAGTGA
* * * * * * * *
8507714 CTATAAAT-AGACTTTTCTTGTCAATGGATGGCATTTGTTTCACGTCTCCCAATGCAAACATTCA
66 CTATAAATGA-ACATTTCTTGTCAATGGATGGCAGTAGCTTCACATTTCCCAAAGCAAACATCCA
* *
8507778 ATTATGA-TGAATTTTAA-CAGAAAATGAAAAAGATTTTGATTT
130 ATTATGATTG-ATTTTAACCA-AAAA-G-AAAAGA-TTCGATTC
* * * * * * *
8507820 AAAATCATTTAGAAGATTATAACACCATTTAAAGCGAGTAATAAGGCTTTCGATGACATGAGCGA
1 AAAATCATTTATAAAATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGATGGCATGAGTGA
* *
8507885 CTATAAATAAACTTTTCTT
66 CTATAAATGAACATTTCTT
8507904 CCCAGTGGAT
Statistics
Matches: 854, Mismatches: 195, Indels: 87
0.75 0.17 0.08
Matches are distributed among these distances:
158 43 0.05
159 72 0.08
160 5 0.01
161 3 0.00
162 1 0.00
163 1 0.00
164 1 0.00
165 1 0.00
167 8 0.01
168 60 0.07
169 218 0.26
170 105 0.12
171 322 0.38
172 14 0.02
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (168 bp):
AAAATCATTTATAAAATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGATGGCATGAGTGA
CTATAAATGAACATTTCTTGTCAATGGATGGCAGTAGCTTCACATTTCCCAAAGCAAACATCCAA
TTATGATTGATTTTAACCAAAAAGAAAAGATTCGATTC
Found at i:8508090 original size:146 final size:146
Alignment explanation
Indices: 8507810--8508092 Score: 345
Period size: 146 Copynumber: 1.9 Consensus size: 146
8507800 AATGAAAAAG
* * * * *
8507810 ATTTTGATTTAAAATCATTTAGAAGATTATAACACCATTTAAAGCGAGTAATAAGGCTTTCGATG
1 ATTTTGATTTAAAATCATTGAGAAGAATATAAAACCATTTAAAGCAAGTAATAAGGCTTTCGAAG
* * **
8507875 ACATGAGCGACTATAAATAAACTTTTCTTCCCAGTGGATGCCATTCACTTCACGTTTCCTGATTT
66 ACATAAGCGACTATAAATAAACTTTTCTTCCCAGTGGATGCCATTCACTTCACATTTCCTGATGC
8507940 AAACATCAAAAGAAAT
131 AAACATCAAAAGAAAT
* * *
8507956 ATTTTGATTTAAAATCATTGATAAGAATATAAAACCATTTAAAGTAAGTAATAAGGCTTTTGAAG
1 ATTTTGATTTAAAATCATTGAGAAGAATATAAAACCATTTAAAGCAAGTAATAAGGCTTTCGAAG
* * ** ** * **
8508021 GCATAAGTGACTATAAATGGACTTTTCTTGTCAGTGGATAG-CTTTTGCTTCACATTTCCCT-AT
66 ACATAAGCGACTATAAATAAACTTTTCTTCCCAGTGGAT-GCCATTCACTTCACATTT-CCTGAT
8508084 GCAAACATC
129 GCAAACATC
8508093 CAATTATGAT
Statistics
Matches: 114, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
146 110 0.96
147 4 0.04
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (146 bp):
ATTTTGATTTAAAATCATTGAGAAGAATATAAAACCATTTAAAGCAAGTAATAAGGCTTTCGAAG
ACATAAGCGACTATAAATAAACTTTTCTTCCCAGTGGATGCCATTCACTTCACATTTCCTGATGC
AAACATCAAAAGAAAT
Found at i:8508270 original size:171 final size:169
Alignment explanation
Indices: 8507947--8510399 Score: 1122
Period size: 170 Copynumber: 14.7 Consensus size: 169
8507937 TTTAAACATC
* * *
8507947 AAAA-GAAATATTTTGATTTAAAATCATTGATAAGAATATAAAACCATTTAAAGTA-AGTAATAA
1 AAAATGAAAAATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAG-AGAGTAATAA
* * * *
8508010 GGCTTTT-GAAGGCATAAGTGACTATAAATGGACTTTTCTTGTCAGTGGATAGCTTTTGCTTCAC
65 GG-TTTTCGAAGGCATAAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTTACTTCAC
* *
8508074 ATTTCCCTATGCAAACATCCAATTATGAT-TGACTTTTAA-CA
129 GTTTCCCAATGCAAACATCCAATTATGATCTG--TTTTAATCA
* * *
8508115 AAAATGAAAATGATTTTGATTTGAAATAATTTATAAGATTATAAAACCATTTAAAGAGAGTAACA
1 AAAATGAAAA--ATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGAGAGTAATA
* * ** ** *
8508180 AGGGTTTTC-ATGGCATAAGTGACTATAAATGGACTTTTCGTATCAATGGATGGAATCCACTTCT
64 A-GGTTTTCGAAGGCATAAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTTACTTCA
* * ** *
8508244 CGTTTCCCAATGCCAACATTCAATTATGAT-TAAATTTAATTA
128 CGTTTCCCAATGCAAACATCCAATTATGATCT-GTTTTAATCA
* * * * * *
8508286 AAAATGATGAATATTTGGATTTAAAATCATTTATAAGATTATAAAACCCTTTAAAGCGGGTGATA
1 AAAATGA--AAAATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGAGAGTAATA
* * * * * * * * ** * *
8508351 AGGCTTTCGAAGGCATGACTGACTACAAATGGAATTTTTTTGTCGATGTTTGGCTTTTAGTTCAT
64 AGGTTTTCGAAGGCATAAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTTACTTCAC
** * * *
8508416 GTTTCCTGATGTAAACATCCAATTATGATATGTTTTAAT-T
129 GTTTCCCAATGCAAACATCCAATTATGATCTGTTTTAATCA
* * * * * * *
8508456 AAAATAAAAAAATTTGATTTAAAATTATCTATAAGATTATAAAATCATTTAAAGTGAGTAATTAG
1 AAAATGAAAAATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGAGAGTAATAAG
* * * * * *
8508521 GTTTTCGAAGCCTTAAGTGGCTACAAATGGACTTTTCTTATCAATGGATGGATTTTGCTTCACGT
66 GTTTTCGAAGGCATAAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTTACTTCACGT
* ** * * *
8508586 TTTCTGATGCCAACATCAAATTATGATCTGTTTTAACCA
131 TTCCCAATGCAAACATCCAATTATGATCTGTTTTAATCA
** ** * * * * *
8508625 AAAATAGAAAAAAATCAATTGAAAATGATTTATAGGATGATAAAACTATTTAAA-ATGAGTAACT
1 AAAAT-GAAAAATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGA-GAGTAA-T
* * * * * **
8508689 -AGG-CTTCGATGGCATGAGTGACTATAAATGGGCTTTTTTTATCAATAAATGGCTTTTGA-TTC
63 AAGGTTTTCGAAGGCATAAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTT-ACTTC
* * * *
8508751 ACGTTTCCTAATGCGAACATCAAATTATAATCTGTTTTAATCA
127 ACGTTTCCCAATGCAAACATCCAATTATGATCTGTTTTAATCA
* * * * *
8508794 AAAATGAAAAAAATTTCAGTTTAAGATCATTTATAAGATTATAAAACCACTTAAAGCGAGTAATA
1 AAAATG-AAAAATTTTGA-TTTAAAATCATTTATAAGATTATAAAACCATTTAAAGAGAGTAATA
* * * * * * * ***
8508859 AGGTTTTCGAAGGC---A-TGCCTATAGATGAACTTTTCTTGTCAATAGATAGCATTCGTTTCAC
64 AGGTTTTCGAAGGCATAAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTTACTTCAC
** *
8508920 GTTTTTCAATACAAACATCCAATTATGAT-TGATTTTAA-CTA
129 GTTTCCCAATGCAAACATCCAATTATGATCTG-TTTTAATC-A
* * * *
8508961 AAAATAAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAATCATTTAAAGTGAGTAACA
1 AAAAT-GAAAA-ATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGAGAGTAATA
* * * * * * * ** *
8509026 A-GCTTTCGATGGCATGAGT-AGTCATAAATAGACTTTTCTTGTCAATTGATGATTTTTGCTTCA
64 AGGTTTTCGAAGGCATAAGTGACT-ATAAATGGACTTTTCTTATCAATGGATGGCTTTTACTTCA
* *** * * *
8509089 TGTTTCTTGATGCAAACACCCAATTATGATCTATTTTAA-CTG
128 CGTTTCCCAATGCAAACATCCAATTATGATCTGTTTTAATC-A
* ** ** * * * * * *
8509131 AAAATAAAAAAAATCAATTAAAAATTATTTATAAGA-TGTAAAACCATTGAAATCA-AGTAACAA
1 AAAATGAAAAATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAA-GAGAGTAATAA
* * * * * ** ** * *
8509194 GGCTTTCAATTGATGGCAT---TCAC-AT-CAT-G--TTTCCCAATACAA-ACAT-CCAATTATA
65 GG-TTT---TCGAAGGCATAAGTGACTATAAATGGACTTTTCTTAT-CAATGGATGGC--TTTTA
* * *** * ** * * *
8509249 -ATCA-ATTTTTAAAT-CAAA-AT-GAAAAAAG-TTTCGATTTAA--A
123 CTTCACGTTTCCCAATGCAAACATCCAATTATGATCT-GTTTTAATCA
** * * * *
8509289 ATCATTTGTAAGA--TT-A--TAAAACCATTTA-AAG-TGA-AAAA-C--------A-AG-----
1 A--AAATGAAAAATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGAGAGTAATA
* * * * * *** * *
8509331 -GCTTTT-GATGGCATGAGTGACTATAAATGGACTTTTCTTCTCAATGGATGGCATCCGCTTTAT
64 AGGTTTTCGAAGGCATAAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTTACTTCAC
* ** *
8509394 GTTTGCCAATGCAAACATCCAATTATGATCAATTTTAACCA
129 GTTTCCCAATGCAAACATCCAATTATGATCTGTTTTAATCA
** * * * * *
8509435 AAAACAAAAAAATAGTTTCATTTAAAATCATTAATAAGATTATAAAACCATTTACAGTGAGTAAC
1 AAAA-TGAAAAAT--TTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGAGAGTAAT
* * * * * * * *
8509500 AAGGATTTCGAAGGCATGAGTGACTATAACTAGACTTTTCTTGTCAATGCATAG-TTTCTGCTTC
63 AAGGTTTTCGAAGGCATAAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTT-TACTTC
* * * **
8509564 ACGTGTCCTAATGAAAACATCCAATTACAATAC-GTTTTAATCA
127 ACGTTTCCCAATGCAAACATCCAATTATGAT-CTGTTTTAATCA
** ** * * * * *
8509607 AAAACCAAAAAAATTAATTTAACATCAGTTATAAGATTATTAAACCATTTAGAACA-AGTAATAA
1 AAAATGAAAAATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTA-AAGAGAGTAATAA
* * * * ** *
8509671 GGCTTTCGAAGGCATGAA-TAACTATAAATGGAGTTTTCTTGTCAATGGATGGAATTTACATCA-
65 GGTTTTCGAAGGCAT-AAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTTACTTCAC
* * *** * *
8509734 TTTTCCCCTATGCAAACATCCAATTATGAT-AAATTTAACCC
129 GTTT-CCCAATGCAAACATCCAATTATGATCTGTTTTAATCA
* * * * * *
8509775 AAAATGAAAAAGATTTCGATTAAAAATCATTGATAAGATTATAAAACCATTTAATGTGAGTAACA
1 AAAATG-AAAA-ATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGAGAGTAATA
* * * * * * *
8509840 AGGCTTTT-GATGGCATGAGTGACTATAAATGGACTTTT-TTGTCAGTGGATGG-TATTCAGTTA
64 AGG-TTTTCGAAGGCATAAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCT-TTTACTTC
* * * * * * *
8509902 ATGTTTCCTAATACAAACAACCAATTATGAT-TGATTTCAGCTA
127 ACGTTTCCCAATGCAAACATCCAATTATGATCTGTTTTAATC-A
* * * * **
8509945 AAAACGAAAAACATTTTGATATAAAATCATTTATAAGATGAAAAAACCATTTAAAGCTAGTAATA
1 AAAATG-AAAA-ATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGAGAGTAATA
* * * * * * * ** * *
8510010 AGGCTTTCGATGGCATTAGTGACTATAAATAGACCTTGCTTGTCAATCAATGGC-ATTAGCTTGA
64 AGGTTTTCGAAGGCATAAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTTA-CTTCA
* * * * * * * *
8510074 CATTTCCCAATGCAAGCTTCAAATTATGATATACTTTTGACCA
128 CGTTTCCCAATGCAAACATCCAATTATGATCT-GTTTTAATCA
* * ** *
8510117 AAAATTAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCTAGTAACA
1 AAAA-TGAAAA-ATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGAGAGTAATA
* * * ** * * * * **
8510182 AGGCTTT--AATGGCAAAACTGAAGATAAATGGACTTTGCTTGTTAATTGATGGCTTTCCGCTTC
64 AGGTTTTCGAA-GGCATAAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTT-TACTTC
* * * * * *
8510245 ATGTTTCCTAATGCGAATATCCAATTATGATCTGTGTTAACCA
127 ACGTTTCCCAATGCAAACATCCAATTATGATCTGTTTTAATCA
* ** * * * * * * **
8510288 AAAATGAAAACAATTCAAGTCAAAATCATTCATGAGATTATAAAACCACTTAAAGCGAGTAACGA
1 AAAATGAAAA-ATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGAGAGTAATAA
* * ** *
8510353 GGCTTTCAAAGGTGTAAGTGACTATAAATGGACTTTTCTTGTCAATG
65 GGTTTTCGAAGGCATAAGTGACTATAAATGGACTTTTCTTATCAATG
8510400 AATGTGTAGT
Statistics
Matches: 1706, Mismatches: 459, Indels: 237
0.71 0.19 0.10
Matches are distributed among these distances:
132 8 0.00
133 1 0.00
135 3 0.00
136 5 0.00
137 3 0.00
138 1 0.00
139 4 0.00
140 9 0.01
141 7 0.00
142 4 0.00
143 5 0.00
144 10 0.01
145 4 0.00
146 2 0.00
149 2 0.00
150 1 0.00
152 11 0.01
153 7 0.00
154 5 0.00
155 13 0.01
156 1 0.00
157 1 0.00
158 2 0.00
159 2 0.00
160 14 0.01
161 1 0.00
162 4 0.00
163 6 0.00
164 10 0.01
165 8 0.00
166 14 0.01
167 137 0.08
168 173 0.10
169 277 0.16
170 382 0.22
171 375 0.22
172 186 0.11
173 8 0.00
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.34
Consensus pattern (169 bp):
AAAATGAAAAATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGAGAGTAATAAG
GTTTTCGAAGGCATAAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTTACTTCACGT
TTCCCAATGCAAACATCCAATTATGATCTGTTTTAATCA
Found at i:8508995 original size:337 final size:334
Alignment explanation
Indices: 8507956--8509178 Score: 1071
Period size: 337 Copynumber: 3.6 Consensus size: 334
8507946 CAAAAGAAAT
* * * *
8507956 ATTTTGATTTAAAATCATTGATAAGAATATAAAACCATTTAAAGTAAGTAATAAGGCTTTTGAAG
1 ATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAG
* * * * * * *
8508021 GCATAAGTGACTATAAATGGACTTTTCTTGTCAGTGGATAGCTTTTGCTTCACATTTCCCTATGC
66 GCATGAGTGACTATAAATGGACTTTTTTTGTCAATGAATGGCTTTTGATTCACGTTT-CCTATGC
** *
8508086 AAACATCCAATTATGATTGACTTTTAA-CAAAAATGAAAATGATTTTGATTTGAAATAATTTATA
130 AAACATCCAATTATGATTG--TTTTAATCAAAAATGAAAAAAATTTAG-TTT-AAATAATTTATA
* *
8508150 AGATTATAAAACCATTTAAAGAGAGTAACAAGGGTTTTC-ATGGCATAAGTGACTATAAATGGAC
191 AGATTATAAAACCATTTAAAGAGAGTAATAA-GGTTTTCGAAGGC--AAGTGACTATAAATGGAC
* * * * ** * * *
8508214 TTTTCGTATCAATGGATGGAATCCACTTCTCGTTTCCCAATGCCAACATTCAATTATGATTAAAT
253 TTTTCTTATCAATGGAT-GAATTCGCTTCACGTTTTTCAATGCCAACATCCAATTATGATTGATT
* ** *
8508279 TTAATTAAAAATGATGAAT
317 TTAACTAAAAAT-AAAAAA
* * * * *
8508298 ATTTGGATTTAAAATCATTTATAAGATTATAAAACCCTTTAAAGCGGGTGATAAGGCTTTCGAAG
1 ATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAG
* * * * ** *
8508363 GCATGACTGACTACAAATGGAATTTTTTTGTCGATGTTTGGCTTTT-AGTTCATGTTTCCTGATG
66 GCATGAGTGACTATAAATGGACTTTTTTTGTCAATGAATGGCTTTTGA-TTCACGTTTCCT-ATG
* * * *
8508427 TAAACATCCAATTATGATATGTTTTAAT-TAAAAT-AAAAAAATTT-GATTTAAAATTATCTATA
129 CAAACATCCAATTATGAT-TGTTTTAATCAAAAATGAAAAAAATTTAG-TTT-AAATAATTTATA
* * * * * *
8508489 AGATTATAAAATCATTTAAAGTGAGTAATTAGGTTTTCGAAGCCTTAAGTGGCTACAAATGGACT
191 AGATTATAAAACCATTTAAAGAGAGTAATAAGGTTTTCGAAGGC--AAGTGACTATAAATGGACT
* * * *
8508554 TTTCTTATCAATGGATGGATTTTGCTTCACG-TTTTCTGATGCCAACATCAAATTATGATCTG-T
254 TTTCTTATCAATGGAT-GAATTCGCTTCACGTTTTTC-AATGCCAACATCCAATTATGAT-TGAT
*
8508617 TTTAACCAAAAATAGAAAAA
316 TTTAACTAAAAATA-AAAAA
* ** * * * * * * *
8508637 A-ATCAATTGAAAATGATTTATAGGATGATAAAACTATTTAAAATGAGTAACT-AGGC-TTCGAT
1 ATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAA-TAAGGCTTTCGAA
* * *
8508699 GGCATGAGTGACTATAAATGGGCTTTTTTTATCAATAAATGGCTTTTGATTCACGTTTCCTAATG
65 GGCATGAGTGACTATAAATGGACTTTTTTTGTCAATGAATGGCTTTTGATTCACGTTTCCT-ATG
* * * *
8508764 CGAACATCAAATTATAATCTGTTTTAATCAAAAATGAAAAAAATTTCAGTTTAAGATCATTTATA
129 CAAACATCCAATTATGAT-TGTTTTAATCAAAAATGAAAAAAATTT-AGTTTAA-ATAATTTATA
* * * * *
8508829 AGATTATAAAACCACTTAAAGCGAGTAATAAGGTTTTCGAAGGC-A-TGCCTATAGATGAACTTT
191 AGATTATAAAACCATTTAAAGAGAGTAATAAGGTTTTCGAAGGCAAGTGACTATAAATGGACTTT
* * * * * *
8508892 TCTTGTCAATAGATAGCATTCGTTTCACGTTTTTCAATACAAACATCCAATTATGATTGATTTTA
256 TCTTATCAATGGAT-GAATTCGCTTCACGTTTTTCAATGCCAACATCCAATTATGATTGATTTTA
8508957 ACTAAAAATAAAAAA
320 ACTAAAAATAAAAAA
* * *
8508972 GATTTTGATTTAAAATCATTTATAAGATTATAAAATCATTTAAAGTGAGTAACAA-GCTTTCGAT
1 -ATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAA
* * * ** * * *
8509036 GGCATGAGT-AGTCATAAATAGACTTTTCTTGTCAATTG-ATGATTTTTGCTTCATGTTTCTTGA
65 GGCATGAGTGACT-ATAAATGGACTTTTTTTGTCAA-TGAATGGCTTTTGATTCACGTTTCCT-A
* * * * * * * *
8509099 TGCAAACACCCAATTATGATCTATTTTAA-CTGAAAAT-AAAAAAAATCAATTAAAAATTATTTA
127 TGCAAACATCCAATTATGAT-TGTTTTAATC-AAAAATGAAAAAAATTTAGTT-TAAATAATTTA
*
8509162 TAAGA-TGTAAAACCATT
189 TAAGATTATAAAACCATT
8509179 GAAATCAAGT
Statistics
Matches: 710, Mismatches: 146, Indels: 58
0.78 0.16 0.06
Matches are distributed among these distances:
334 10 0.01
335 22 0.03
336 84 0.12
337 207 0.29
338 58 0.08
339 134 0.19
340 59 0.08
341 15 0.02
342 119 0.17
343 2 0.00
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (334 bp):
ATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAG
GCATGAGTGACTATAAATGGACTTTTTTTGTCAATGAATGGCTTTTGATTCACGTTTCCTATGCA
AACATCCAATTATGATTGTTTTAATCAAAAATGAAAAAAATTTAGTTTAAATAATTTATAAGATT
ATAAAACCATTTAAAGAGAGTAATAAGGTTTTCGAAGGCAAGTGACTATAAATGGACTTTTCTTA
TCAATGGATGAATTCGCTTCACGTTTTTCAATGCCAACATCCAATTATGATTGATTTTAACTAAA
AATAAAAAA
Found at i:8509117 original size:170 final size:171
Alignment explanation
Indices: 8507956--8509200 Score: 1029
Period size: 171 Copynumber: 7.4 Consensus size: 171
8507946 CAAAAGAAAT
* * * *
8507956 ATTTTGATTTAAAATCATTGATAAGAATATAAAACCATTTAAAGTAAGTAATAAGGCTTTTGAAG
1 ATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAG
* * * *
8508021 GCATAAGTGACTATAAATGGACTTTTCTTGTCAGTGGATAGCTTTTGCTTCACATTTCCCT-ATG
66 GCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGATTTTGCTTCACGTTT-CCTAATG
**
8508085 CAAACATCCAATTATGAT-TGACTTTTAAC-AAAAATGAAAATG
130 CAAACATCCAATTATGATCTGA-TTTTAACTAAAAAT-AAAAAA
* * * * * *
8508127 ATTTTGATTTGAAATAATTTATAAGATTATAAAACCATTTAAAGAGAGTAACAAGGGTTTTC-AT
1 ATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAATAA-GGCTTTCGAA
* * * *** * *
8508191 GGCATAAGTGACTATAAATGGACTTTTCGTATCAATGGATGGAATCCACTTCTCGTTTCCCAATG
65 GGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGATTTTGCTTCACGTTTCCTAATG
* * * * * ** *
8508256 CCAACATTCAATTATGAT-TAAATTTAATTAAAAATGATGAAT
130 CAAACATCCAATTATGATCTGATTTTAACTAAAAAT-AAAAAA
* * * * *
8508298 ATTTGGATTTAAAATCATTTATAAGATTATAAAACCCTTTAAAGCGGGTGATAAGGCTTTCGAAG
1 ATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAG
* * * * * * ** * * *
8508363 GCATGACTGACTACAAATGGAATTTTTTTGTCGATGTTTGGCTTTTAG-TTCATGTTTCCTGATG
66 GCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGATTTT-GCTTCACGTTTCCTAATG
* * *
8508427 TAAACATCCAATTATGATATG-TTTTAA-TTAAAATAAAAAA
130 CAAACATCCAATTATGATCTGATTTTAACTAAAAATAAAAAA
* * * * *
8508467 A-TTTGATTTAAAATTATCTATAAGATTATAAAATCATTTAAAGTGAGTAATTAGGTTTTCGAAG
1 ATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAG
* * * * * * *
8508531 CCTTAAGTGGCTACAAATGGACTTTTCTTATCAATGGATGGATTTTGCTTCACGTTTTCTGATGC
66 GCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGATTTTGCTTCACGTTTCCTAATGC
* * *
8508596 CAACATCAAATTATGATCTG-TTTTAACCAAAAATAGAAAAA
131 AAACATCCAATTATGATCTGATTTTAACTAAAAATA-AAAAA
* ** * * * * * * *
8508637 A-ATCAATTGAAAATGATTTATAGGATGATAAAACTATTTAAAATGAGTAACT-AGGC-TTCGAT
1 ATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAA-TAAGGCTTTCGAA
* * * * ** * *
8508699 GGCATGAGTGACTATAAATGGGCTTTTTTTATCAATAAATGGCTTTTGATTCACGTTTCCTAATG
65 GGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGATTTTGCTTCACGTTTCCTAATG
* * *
8508764 CGAACATCAAATTATAATCTG-TTTTAA-TCAAAAATGAAAAAA
130 CAAACATCCAATTATGATCTGATTTTAACT-AAAAAT-AAAAAA
* * * * *
8508806 A-TTTCAGTTTAAGATCATTTATAAGATTATAAAACCACTTAAAGCGAGTAATAAGGTTTTCGAA
1 ATTTTGA-TTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAA
* * * * * * * *
8508870 GGC---A-TGCCTATAGATGAACTTTTCTTGTCAATAGATAGCA-TTCGTTTCACGTTT-TTCAA
65 GGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGAT-GGATTTTGCTTCACGTTTCCT-AA
*
8508929 TACAAACATCCAATTATGAT-TGATTTTAACTAAAAATAAAAAA
128 TGCAAACATCCAATTATGATCTGATTTTAACTAAAAATAAAAAA
* * *
8508972 GATTTTGATTTAAAATCATTTATAAGATTATAAAATCATTTAAAGTGAGTAACAA-GCTTTCGAT
1 -ATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAA
* * * * * * *
8509036 GGCATGAGT-AGTCATAAATAGACTTTTCTTGTCAATTGAT-GATTTTTGCTTCATGTTTCTTGA
65 GGCATAAGTGACT-ATAAATGGACTTTTCTTGTCAATGGATGGA-TTTTGCTTCACGTTTCCTAA
* *
8509099 TGCAAACACCCAATTATGATCT-ATTTTAACTGAAAATAAAAAA
128 TGCAAACATCCAATTATGATCTGATTTTAACTAAAAATAAAAAA
* ** * * * * * *
8509142 A-ATCAATTAAAAATTATTTATAAGA-TGTAAAACCATTGAAA-TCAAGTAACAAGGCTTTC
1 ATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGT-GAGTAATAAGGCTTTC
8509201 AATTGATGGC
Statistics
Matches: 853, Mismatches: 189, Indels: 67
0.77 0.17 0.06
Matches are distributed among these distances:
166 20 0.02
167 132 0.15
168 157 0.18
169 110 0.13
170 179 0.21
171 249 0.29
172 6 0.01
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (171 bp):
ATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAG
GCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGATTTTGCTTCACGTTTCCTAATGC
AAACATCCAATTATGATCTGATTTTAACTAAAAATAAAAAA
Found at i:8509857 original size:170 final size:169
Alignment explanation
Indices: 8509199--8510399 Score: 992
Period size: 172 Copynumber: 7.0 Consensus size: 169
8509189 AACAAGGCTT
* * * * *
8509199 TCAATTGATGGCATTCACATCATGTTTCCCAATACAAACATCCAATTATAATCAATTTTTAAATC
1 TCAATGGATGGCATTCACTTCATGTTTCCCAATGCAAACATCCAATTATGAT-AA-TTTT-AACC
**
8509264 -AAAATGAAAAAAGTTTCGATTTAAAATCATTTG-TAAGATTATAAAACCATTTAAAGTGAAAAA
63 AAAAATGAAAAAA-TTTCGATTTAAAATCA-TTGATAAGATTATAAAACCATTTAAAGTGAGTAA
* *
8509327 CAAGGCTTTTGATGGCATGAGTGACTATAAATGGACTTTTCTTC
126 CAAGGCTTTCGATGGCATGAGTGACTATAAATGGACTTTTCTTG
* * * *
8509371 TCAATGGATGGCATCCGCTTTATGTTTGCCAATGCAAACATCCAATTATGATCAATTTTAACCAA
1 TCAATGGATGGCATTCACTTCATGTTTCCCAATGCAAACATCCAATTATGAT-AATTTTAACCAA
** * *
8509436 AAACAAAAAAATAGTTTC-ATTTAAAATCATTAATAAGATTATAAAACCATTTACAGTGAGTAAC
65 AAA-TGAAAAA-A-TTTCGATTTAAAATCATTGATAAGATTATAAAACCATTTAAAGTGAGTAAC
* * * *
8509500 AAGGATTTCGAAGGCATGAGTGACTATAACTAGACTTTTCTTG
127 AAGGCTTTCGATGGCATGAGTGACTATAAATGGACTTTTCTTG
* * * * * * * * ** * *
8509543 TCAATGCATAG-TTTCTGCTTCACGTGTCCTAATGAAAACATCCAATTACAATACGTTTTAATCA
1 TCAATGGATGGCATTC-ACTTCATGTTTCCCAATGCAAACATCCAATTATGATA-ATTTTAACCA
** * * * * ** *
8509607 AAAACCAAAAAAATT-AATTTAACATCAGTT-ATAAGATTATTAAACCATTTAGAA-CAAGTAAT
64 AAAATGAAAAAATTTCGATTTAAAATCA-TTGATAAGATTATAAAACCATTTA-AAGTGAGTAAC
* * * *
8509669 AAGGCTTTCGAAGGCATGAATAACTATAAATGGAGTTTTCTTG
127 AAGGCTTTCGATGGCATGAGTGACTATAAATGGACTTTTCTTG
* * * * * *
8509712 TCAATGGATGGAATTTACATCAT-TTTCCCCTATGCAAACATCCAATTATGATAAATTTAACCCA
1 TCAATGGATGGCATTCACTTCATGTTT-CCCAATGCAAACATCCAATTATGATAATTTTAACCAA
* *
8509776 AAATGAAAAAGATTTCGATTAAAAATCATTGATAAGATTATAAAACCATTTAATGTGAGTAACAA
65 AAATGAAAAA-ATTTCGATTTAAAATCATTGATAAGATTATAAAACCATTTAAAGTGAGTAACAA
*
8509841 GGCTTTTGATGGCATGAGTGACTATAAATGGACTTTT-TTG
129 GGCTTTCGATGGCATGAGTGACTATAAATGGACTTTTCTTG
* * * * * * * * * * *
8509881 TCAGTGGATGGTATTCAGTTAATGTTTCCTAATACAAACAACCAATTATGATTGATTTCAGCTAA
1 TCAATGGATGGCATTCACTTCATGTTTCCCAATGCAAACATCCAATTATGA-TAATTTTAACCAA
* * * * * * *
8509946 AAACGAAAAACATTTTGATATAAAATCATTTATAAGATGAAAAAACCATTTAAAGCT-AGTAATA
65 AAATGAAAAA-ATTTCGATTTAAAATCATTGATAAGATTATAAAACCATTTAAAG-TGAGTAACA
* * * *
8510010 AGGCTTTCGATGGCATTAGTGACTATAAATAGACCTTGCTTG
128 AGGCTTTCGATGGCATGAGTGACTATAAATGGACTTTTCTTG
** * ** * * * *
8510052 TCAATCAATGGCATT-AGCTTGACATTTCCCAATGCAAGCTTCAAATTATGATATACTTTTGACC
1 TCAATGGATGGCATTCA-CTTCATGTTTCCCAATGCAAACATCCAATTATGATA-A-TTTTAACC
* * * *
8510116 AAAAATTAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCT-AGTAA
63 AAAAATGAAAAA-ATTTCGATTTAAAATCATTGATAAGATTATAAAACCATTTAAAG-TGAGTAA
* ** * ** *
8510180 CAAGGCTTT-AATGGCAAAACTGAAGATAAATGGACTTTGCTTG
126 CAAGGCTTTCGATGGCATGAGTGACTATAAATGGACTTTTCTTG
* * * * * * * *
8510223 TTAATTGATGGCTTTCCGCTTCATGTTTCCTAATGCGAATATCCAATTATGAT-CTGTGTTAACC
1 TCAATGGATGGCATT-CACTTCATGTTTCCCAATGCAAACATCCAATTATGATAAT-T-TTAACC
* * * * * * *
8510287 AAAAATGAAAACAA-TTCAAGTCAAAATCATTCATGAGATTATAAAACCACTTAAAGCGAGTAAC
63 AAAAATGAAAA-AATTTCGATTTAAAATCATTGATAAGATTATAAAACCATTTAAAGTGAGTAAC
* * * ** *
8510351 GAGGCTTTCAAAGGTGTAAGTGACTATAAATGGACTTTTCTTG
127 AAGGCTTTCGATGGCATGAGTGACTATAAATGGACTTTTCTTG
8510394 TCAATG
1 TCAATG
8510400 AATGTGTAGT
Statistics
Matches: 814, Mismatches: 186, Indels: 59
0.77 0.18 0.06
Matches are distributed among these distances:
168 17 0.02
169 155 0.19
170 222 0.27
171 141 0.17
172 273 0.34
173 6 0.01
ACGTcount: A:0.39, C:0.15, G:0.14, T:0.33
Consensus pattern (169 bp):
TCAATGGATGGCATTCACTTCATGTTTCCCAATGCAAACATCCAATTATGATAATTTTAACCAAA
AATGAAAAAATTTCGATTTAAAATCATTGATAAGATTATAAAACCATTTAAAGTGAGTAACAAGG
CTTTCGATGGCATGAGTGACTATAAATGGACTTTTCTTG
Found at i:8517334 original size:2 final size:2
Alignment explanation
Indices: 8517327--8517356 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
8517317 ATCTATTTGN
8517327 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8517357 GTTGTGCATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8517564 original size:40 final size:38
Alignment explanation
Indices: 8517475--8517575 Score: 121
Period size: 38 Copynumber: 2.6 Consensus size: 38
8517465 AATGTCCGTC
* * * *
8517475 TGCACAATGTGGGGGGATGTACACTATGGCACTAACTG
1 TGCACGATGTGGGGGGATGCACACGATGACACTAACTG
* *
8517513 TGCACGATGTGGGGGGATGCACACGATGACTCTAGCTATG
1 TGCACGATGTGGGGGGATGCACACGATGACACTAAC--TG
*
8517553 TGCATGATGTGGGGGGATGCACA
1 TGCACGATGTGGGGGGATGCACA
8517576 TGAGTTGGGT
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
38 30 0.56
40 24 0.44
ACGTcount: A:0.24, C:0.18, G:0.36, T:0.23
Consensus pattern (38 bp):
TGCACGATGTGGGGGGATGCACACGATGACACTAACTG
Found at i:8522490 original size:2 final size:2
Alignment explanation
Indices: 8522455--8522481 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8522445 ATGATGATTG
8522455 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
8522482 CACATATATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8528829 original size:170 final size:168
Alignment explanation
Indices: 8527994--8529538 Score: 1222
Period size: 171 Copynumber: 9.0 Consensus size: 168
8527984 CTGTGACATA
* * *
8527994 ATGGC-TTCTGCTTCATGTTTCATAATGCAAACATCCAATTATCATCTATTTTAACCAAAAATGA
1 ATGGCATTC-GCTTCATGTTTC-CAATGCAAACATCCAATTATGATCTGTTTTAACCAAAAAT--
* * * * * ** *
8528058 AAAAAAAATTTGACTTAAAATCATTTATAGGATTAT-TAACCATTTAAAGCAAGTAATAAGGCTT
62 AAAAAGAATTCGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTT
* ** *
8528122 TCGAAGGCATGAGTAACTATAAATGGACTTAGCTTATCAATGG
127 T-GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGG
* * * * *
8528165 ATGGCATTCGCATCATGTTTTCATATGTAAGCATCCAATTATGATC-GATTTGAACCAAAAATGA
1 ATGGCATTCGCTTCATGTTTCCA-ATGCAAACATCCAATTATGATCTG-TTTTAACCAAAAAT-A
* * * * * *
8528229 AAAAGACTTCAATTGAAAATCATTTACAAGATTGTAAAACCATTTAAAGTGAGTAACAATGCTTT
63 AAAAGAATTCGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGC-TT
* * *
8528294 TAAAGGCATGAGTGACTATAAATGGGCTTTTCTTATCAATGG
127 TGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGG
* * * * * * *
8528336 ATGACATCCACTTCAGGTTTACCGATGCAAACATCCAATTATGAT-TGGTTTTTACCAAAAACAA
1 ATGGCATTCGCTTCATGTTT-CCAATGCAAACATCCAATTATGATCT-GTTTTAACCAAAAATAA
* * * * * **
8528400 AAAAACATTTGATTTAAAATCATTTAGAAGATTATAAACCCATTTAAAGCGAGTAACAAGATTTT
64 AAAGA-ATTCGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTT
* ** * *
8528465 CGATGGCATGAGTGAAGATAAATGGACCTTTCTTGTTAATGG
128 -GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGG
* * * * ** * * *
8528507 ATGGCATTAGGTTGATGTGTCGCAATGCAAACATCCAATTATGAT-TAACTTTGAGCAAAAACAA
1 ATGGCATTCGCTTCATGTTTC-CAATGCAAACATCCAATTATGATCT-GTTTTAACCAAAAA-TA
* * * *
8528571 AAAAGATTTTGATTTAAAATTATTTATCAGATTATAAAACCATTTAAAGCT-AGTAACAAGGC-T
63 AAAAGAATTCGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAG-TGAGTAACAAGGCTT
* * *
8528634 TCAATGGCATGAGTGACTCTAAATGGACTTTTCTTGTCAATTG
127 TGAA-GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGG
* * * * *
8528677 ATAGCCTTCGCTTCACGTTTCCTAATGCGAACATCCAATTATGATCTGTTTTAACTAAAAATAAA
1 ATGGCATTCGCTTCATGTTTCC-AATGCAAACATCCAATTATGATCTGTTTTAACCAAAAATAAA
* * * * * *
8528742 AACAATTCAATTTAAAAACATTTATAAGATTATAAAACGACTTAAAGTGAGTAACAATGCTTCTG
65 AAGAATTCGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTT-TG
* * * * *
8528807 AAGGTATAAATGACTATAAATGGAGTTTTCTTGTTAATGG
129 AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGG
* * * *
8528847 ATAGCATTC-CTTTCATGTCTCCCAATACAAACATCCAATTATGATCTATTTTAA-CAAAAACTG
1 ATGGCATTCGC-TTCATGT-TTCCAATGCAAACATCCAATTATGATCTGTTTTAACCAAAAA-T-
* * * *
8528910 AAAAAGATTTTGATTTAAAATCATTGATATGATTATAAAACCATTTAAAGCT-AGTAACAA-GCT
62 AAAAAGAATTCGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAG-TGAGTAACAAGGCT
* * * * * *
8528973 TGGACAATGGCATGAGTGACTTTAAATAGACTTTTCTTATAAATTG
126 TTG--AA-GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGG
* * * * * ** * * * ** *
8529019 ATGGCCTTTGTTTCACGGTTCCCAATGTGACCATCCAATTATGTTCTATTTTAATTAAAACTAAA
1 ATGGCATTCGCTTCA-TGTTTCCAATGCAAACATCCAATTATGATCTGTTTTAACCAAAAATAAA
** * * **
8529084 ACCAATTCAATTTTAAATCATTTATAAGATTGGAAAACCACTTT-AAGT-AGTAACAAGGCTTTT
65 AAGAATTCGATTTAAAATCATTTATAAGATTATAAAACCA-TTTAAAGTGAGTAACAAGGC-TTT
* *
8529147 GAAGGCATAAATGACTATAAATGGAC--TTCTTG-CTAATGG
128 GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTC-AATGG
* * * * * * * *
8529186 ATAGCACTCGCTTCATGTCTCCCAATACAAACATCAAATCATAATC-GATTTTAACCAAAAATGA
1 ATGGCATTCGCTTCATGT-TTCCAATGCAAACATCCAATTATGATCTG-TTTTAACCAAAAATAA
* * * *
8529250 AAAGGATTCTGGTTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTACCAAGGCTTT
64 AAAGAATTC-GATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTT
* * * *
8529315 CGATGGCATGAGTGACTATAAATGGAATTTT-TTCTCAATGA
128 -GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGG
* * **
8529356 ATGGCATCCGTTTCACATTTCCTAATGCAAACATCCAATTATGAT-TGATTTTAACCAAAAATTA
1 ATGGCATTCGCTTCATGTTTCC-AATGCAAACATCCAATTATGATCTG-TTTTAACCAAAAA-T-
* * ** * * **
8529420 AAAAAAATATTTTAGAGCTAAAATCATTAAGT-AGATTATCAAACCATTTAAAACGAGTAACAAG
62 AAAAAGA-A--TTCGATTTAAAATCATTTA-TAAGATTATAAAACCATTTAAAGTGAGTAACAAG
* * * *
8529484 GCTTTCGACGGCATAAGTGACTATAAACGGACTTTTCTTGTCAATAG
123 GCTTT-GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGG
8529531 ATGGCATT
1 ATGGCATT
8529539 GTAGTACCCC
Statistics
Matches: 1077, Mismatches: 245, Indels: 100
0.76 0.17 0.07
Matches are distributed among these distances:
166 2 0.00
167 59 0.05
168 34 0.03
169 114 0.11
170 257 0.24
171 419 0.39
172 95 0.09
173 7 0.01
174 73 0.07
175 17 0.02
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (168 bp):
ATGGCATTCGCTTCATGTTTCCAATGCAAACATCCAATTATGATCTGTTTTAACCAAAAATAAAA
AGAATTCGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTGAA
GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGG
Found at i:8529123 original size:511 final size:507
Alignment explanation
Indices: 8528017--8529483 Score: 1372
Period size: 511 Copynumber: 2.9 Consensus size: 507
8528007 CATGTTTCAT
* * * * ** *
8528017 AATGCAAACATCCAATTATCATCT-A-TTTTAACCAAAAATGAAAAAAAAATTTGACTTAAAATC
1 AATGCAAACATCCAATTATGAT-TAACTTTGAA-CAAAAA-CAAAAAACAATTCAATTTAAAATC
* ** * * *
8528080 ATTTATAGGATTA-TTAACCATTTAAAGCAAGTAATAAGGCTTTCGAAGGCATGAGTAACTATAA
63 ATTTATAAGATTAGAAAACCATTTAAAGCTAGTAACAAGGCTTTC-AAGGCATGAGTGACTATAA
** * * * * * * *
8528144 ATGGACTTAGCTTATCAATGGATGGCATTCGCATCATGTTTTCATATGTAAGCATCCAATTATGA
127 ATGGACTTTTCTTGTCAATGGATAGCCTTCGCTTCATGTTTCCA-ATGCAAACATCCAATTATGA
* * * * *
8528209 TCGATTTGAACCAAAAATGAAAAAGACTTCAATTGAAAATCATTTACAAGATTGTAAAACCATTT
191 TCGATTTTAACCAAAAAT-AAAAAGAATTCAATTTAAAATCATTTATAAGATTATAAAACCATTT
*
8528274 AAAGTGAGTAACAATGCTTTTAAAGGCATGAGTGACTATAAATGG-GCTTTTCTTATCAATGGAT
255 AAAGTGAGTAACAATGC-TTTGAAGGCATGAGTGACTATAAATGGAG-TTTTCTTATCAATGGAT
* * * * * * *
8528338 GACATCCACTTCAGGTTTACCGATGCAAACATCCAATTATGATTGGTTTTTACCAAAAACAAAAA
318 G-CATCCATTTCACGTTTCCCAATGCAAACATCCAATTATGATT-GATTTTAACAAAAACTAAAA
* **
8528403 AACA-TTTGATTTAAAATCATTTAGA-AGATTATAAACCCATTTAAAGCGAGTAACAAGATTTTC
381 AACATTTTGATTTAAAATCA-TTA-ATAGATTATAAAACCATTTAAAGCGAGTAACAAGATTGAC
* * * * * * *
8528466 GATGGCATGAGTGAAGATAAATGGACCTTTCTTGTTAATGGATGGCATTAGGTTGATGTGTCGC
444 AATGGCATGAGTGAAGATAAATAGACCTTTCTTATAAATGGATGGCATTAGGTTCAGGTGTCCC
* * * ** *
8528530 AATGCAAACATCCAATTATGATTAACTTTGAGCAAAAACAAAAAAGATTTTGATTTAAAATTATT
1 AATGCAAACATCCAATTATGATTAACTTTGAACAAAAACAAAAAACAATTCAATTTAAAATCATT
* * *
8528595 TATCAGATTATAAAACCATTTAAAGCTAGTAACAAGGC-TTCAATGGCATGAGTGACTCTAAATG
66 TATAAGATTAGAAAACCATTTAAAGCTAGTAACAAGGCTTTCAA-GGCATGAGTGACTATAAATG
* * *
8528659 GACTTTTCTTGTCAATTGATAGCCTTCGCTTCACGTTTCCTAATGCGAACATCCAATTATGATCT
130 GACTTTTCTTGTCAATGGATAGCCTTCGCTTCATGTTTCC-AATGCAAACATCCAATTATGATC-
* * * * *
8528724 G-TTTTAACTAAAAATAAAAACAATTCAATTTAAAAACATTTATAAGATTATAAAACGACTTAAA
193 GATTTTAACCAAAAATAAAAAGAATTCAATTTAAAATCATTTATAAGATTATAAAACCATTTAAA
* * * * *
8528788 GTGAGTAACAATGCTTCTGAAGGTATAAATGACTATAAATGGAGTTTTCTTGTTAATGGATAGCA
258 GTGAGTAACAATGCTT-TGAAGGCATGAGTGACTATAAATGGAGTTTTCTTATCAATGGAT-GCA
* * * * *
8528853 TTCC-TTTCATGTCTCCCAATACAAACATCCAATTATGATCT-ATTTTAACAAAAACTGAAAAAG
321 -TCCATTTCACGTTTCCCAATGCAAACATCCAATTATGAT-TGATTTTAACAAAAACTAAAAAAC
* * *
8528916 ATTTTGATTTAAAATCATTGATATGATTATAAAACCATTTAAAGCTAGTAACAAGCTTGGACAAT
384 ATTTTGATTTAAAATCATTAATA-GATTATAAAACCATTTAAAGCGAGTAACAAGATT-GACAAT
*** * * * * *
8528981 GGCATGAGTGACTTTAAATAGACTTTTCTTATAAATTGATGGCCTTTGTTTCACGGT-TCCC
447 GGCATGAGTGAAGATAAATAGACCTTTCTTATAAATGGATGGCATTAGGTTCA-GGTGTCCC
** * * * ** * * *
8529042 AATGTGACCATCCAATTATG-TTCTA-TTTTAATTAAAACTAAAACCAATTCAATTTTAAATCAT
1 AATGCAAACATCCAATTATGATT-AACTTTGAACAAAAACAAAAAACAATTCAATTTAAAATCAT
* * * *
8529105 TTATAAGATTGGAAAACCACTTT-AAG-TAGTAACAAGGCTTTTGAAGGCATAAATGACTATAAA
65 TTATAAGATTAGAAAACCA-TTTAAAGCTAGTAACAAGGC-TTTCAAGGCATGAGTGACTATAAA
* * * * *
8529168 TGGAC--TTCTTG-CTAATGGATAGCAC-TCGCTTCATGTCTCCCAATACAAACATCAAATCATA
128 TGGACTTTTCTTGTC-AATGGATAGC-CTTCGCTTCATGT-TTCCAATGCAAACATCCAATTATG
* * **
8529229 ATCGATTTTAACCAAAAATGAAAAGGATTCTGGTTTAAAATCATTTATAAGATTATAAAACCATT
190 ATCGATTTTAACCAAAAATAAAAAGAATTC-AATTTAAAATCATTTATAAGATTATAAAACCATT
* * * * * * *
8529294 TAAAGCGAGTACCAAGGCTTTCGATGGCATGAGTGACTATAAATGGAATTTT-TTCTCAATGAAT
254 TAAAGTGAGTAACAATGCTTT-GAAGGCATGAGTGACTATAAATGGAGTTTTCTTATCAATGGAT
* * * *
8529358 GGCATCCGTTTCACATTTCCTAATGCAAACATCCAATTATGATTGATTTTAACCAAAAATTAAAA
318 -GCATCCATTTCACGTTTCCCAATGCAAACATCCAATTATGATTGATTTTAA-CAAAAACT--AA
* ** * *
8529423 AAAATATTTTAGAGCTAAAATCATTAAGTAGATTATCAAACCATTTAAAACGAGTAACAAG
379 AAAACATTTT-GATTTAAAATCATTAA-TAGATTATAAAACCATTTAAAGCGAGTAACAAG
8529484 GCTTTCGACG
Statistics
Matches: 779, Mismatches: 142, Indels: 66
0.79 0.14 0.07
Matches are distributed among these distances:
508 6 0.01
509 115 0.15
510 117 0.15
511 237 0.30
512 202 0.26
513 96 0.12
514 6 0.01
ACGTcount: A:0.39, C:0.15, G:0.14, T:0.32
Consensus pattern (507 bp):
AATGCAAACATCCAATTATGATTAACTTTGAACAAAAACAAAAAACAATTCAATTTAAAATCATT
TATAAGATTAGAAAACCATTTAAAGCTAGTAACAAGGCTTTCAAGGCATGAGTGACTATAAATGG
ACTTTTCTTGTCAATGGATAGCCTTCGCTTCATGTTTCCAATGCAAACATCCAATTATGATCGAT
TTTAACCAAAAATAAAAAGAATTCAATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTG
AGTAACAATGCTTTGAAGGCATGAGTGACTATAAATGGAGTTTTCTTATCAATGGATGCATCCAT
TTCACGTTTCCCAATGCAAACATCCAATTATGATTGATTTTAACAAAAACTAAAAAACATTTTGA
TTTAAAATCATTAATAGATTATAAAACCATTTAAAGCGAGTAACAAGATTGACAATGGCATGAGT
GAAGATAAATAGACCTTTCTTATAAATGGATGGCATTAGGTTCAGGTGTCCC
Found at i:8533401 original size:42 final size:42
Alignment explanation
Indices: 8533285--8533518 Score: 285
Period size: 42 Copynumber: 5.6 Consensus size: 42
8533275 TGTTGATGTG
* * *
8533285 GACCCGGCTCTGTGCTAGTAGGTGTGCACATAAGCCGTTGC-
1 GACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCT
* * *
8533326 GAACCCGACTATGT-TGAGTAGGAGTGCATATAAGCCGTTGCT
1 G-ACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCT
**
8533368 GACCTTGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCT
1 GACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCT
* * **
8533410 GACCCTGCTAAGTGCGAGTAAAAGTGCACATAAGCCGTTGCT
1 GACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCT
* *
8533452 AACCCGGCTATGTGTGAGT-GGAAGTGCACATAAGCCGTTGCT
1 GACCCGGCTATGTGCGAGTAGG-AGTGCACATAAGCCGTTGCT
* *
8533494 GACCCGGCTATATGCGAGTGGGAGT
1 GACCCGGCTATGTGCGAGTAGGAGT
8533519 ATGCAGCCGT
Statistics
Matches: 164, Mismatches: 24, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
41 33 0.20
42 129 0.79
43 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.31, T:0.24
Consensus pattern (42 bp):
GACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCT
Found at i:8540112 original size:84 final size:84
Alignment explanation
Indices: 8539966--8540131 Score: 226
Period size: 84 Copynumber: 2.0 Consensus size: 84
8539956 TGTTGATATG
* * *
8539966 GACCCAGCTATGTGCGAGTGGCAGTGCGCATAAGCCGTTGCTGACCCGATTATGTGCAAGTAGGA
1 GACCCAGCTATGTGCGAGTGGCAGTGCACATAAGCCATTGCTGACCCGACTATGTGCAAGTAGGA
*
8540031 GTGCACATAAGCTATTGCT
66 GTGCACATAAGCCATTGCT
* * * * *
8540050 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCATTGTTGACCCTG-CTATGTGCGAGTAGT
1 GACCCAGCTATGTGCGAGTGGCAGTGCACATAAGCCATTGCTGACCC-GACTATGTGCAAGTAGG
*
8540114 AGTGCGCATAAGCCATTG
65 AGTGCACATAAGCCATTG
8540132 TATATGAGTT
Statistics
Matches: 71, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
84 70 0.99
85 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.31, T:0.24
Consensus pattern (84 bp):
GACCCAGCTATGTGCGAGTGGCAGTGCACATAAGCCATTGCTGACCCGACTATGTGCAAGTAGGA
GTGCACATAAGCCATTGCT
Found at i:8540132 original size:42 final size:41
Alignment explanation
Indices: 8539966--8540131 Score: 199
Period size: 42 Copynumber: 4.0 Consensus size: 41
8539956 TGTTGATATG
* *
8539966 GACCCAGCTATGTGCGAGT-GGCAGTGCGCATAAGCCGTTGCT
1 GACCC-GCTATGTGCGAGTAGG-AGTGCACATAAGCCATTGCT
* * *
8540008 GACCCGATTATGTGCAAGTAGGAGTGCACATAAGCTATTGCT
1 GACCCG-CTATGTGCGAGTAGGAGTGCACATAAGCCATTGCT
* *
8540050 GACCCGGCTATGTGCGAGTGGGAGTGCACATAAGCCATTGTT
1 GACCC-GCTATGTGCGAGTAGGAGTGCACATAAGCCATTGCT
* *
8540092 GACCCTGCTATGTGCGAGTAGTAGTGCGCATAAGCCATTG
1 GACCC-GCTATGTGCGAGTAGGAGTGCACATAAGCCATTG
8540132 TATATGAGTT
Statistics
Matches: 107, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
41 1 0.01
42 103 0.96
43 3 0.03
ACGTcount: A:0.23, C:0.22, G:0.31, T:0.24
Consensus pattern (41 bp):
GACCCGCTATGTGCGAGTAGGAGTGCACATAAGCCATTGCT
Found at i:8543162 original size:20 final size:21
Alignment explanation
Indices: 8543121--8543162 Score: 52
Period size: 20 Copynumber: 2.0 Consensus size: 21
8543111 ACCAAACCAC
*
8543121 AGATTGAAGATAGATTTTGTG
1 AGATTGAAGATAGATTTGGTG
8543142 AGATTAGAAGA-A-ATTTGGTG
1 AGATT-GAAGATAGATTTGGTG
8543162 A
1 A
8543163 TGGTTATTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 8 0.42
21 6 0.32
22 5 0.26
ACGTcount: A:0.38, C:0.00, G:0.29, T:0.33
Consensus pattern (21 bp):
AGATTGAAGATAGATTTGGTG
Found at i:8557521 original size:42 final size:42
Alignment explanation
Indices: 8557466--8557583 Score: 132
Period size: 42 Copynumber: 2.8 Consensus size: 42
8557456 CAGCTCATAT
*
8557466 GCAACGACTTATGCTCACTCCCATTCGCACATAGCCAGGTCA
1 GCAACGGCTTATGCTCACTCCCATTCGCACATAGCCAGGTCA
* * ** *
8557508 GTAACGGCTTATGCACACTCCCACTT-GTGCATAGCCGGGTCA
1 GCAACGGCTTATGCTCACTCCCA-TTCGCACATAGCCAGGTCA
* *
8557550 GCAACGGCTTATG-TGCACTCCTACTCGCACATAG
1 GCAACGGCTTATGCT-CACTCCCATTCGCACATAG
8557584 TCGAGTCAAT
Statistics
Matches: 61, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
41 1 0.02
42 58 0.95
43 2 0.03
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (42 bp):
GCAACGGCTTATGCTCACTCCCATTCGCACATAGCCAGGTCA
Found at i:8559562 original size:171 final size:169
Alignment explanation
Indices: 8559086--8561280 Score: 1296
Period size: 171 Copynumber: 12.8 Consensus size: 169
8559076 TACTTCACAT
** * * ** * *
8559086 TTTCT-GATGCAAAACATCCAATTATGATATG-TTTTAACCATAAATGGAAAACAAATTGACTTG
1 TTTCTCGATGC-AAACATCCAATTATGAT-TGATTTTAATAAAAAAT--AAAAGATTTTGATTTA
* * * * * * *
8559149 AAATCAATTATAAGATTATTAAACCACTTAAAGCGAATAACAAGTCTTTCAAAAGTAC--GAGTG
62 AAATCATTTATAAGATTATAAAACCACTTAAAGCGAGTAACAAGGCTTTC-GATG-ACATGAGTA
* * * *
8559212 ACTATAAATGGACTTTTCCTATCAATGGATAGCAT-TGGTTACATG
125 ACTATAAATGGACTTTTCTTCTCAATGGATGGCATCTGCTT-CATG
* * * ** ** * **
8559257 TTTCCCAATGTAAACATCCAATGGTGATTGATTTTAACCAAAAATGAAAAGAATTCAATTTAAAA
1 TTTCTCGATGCAAACATCCAATTATGATTGATTTTAATAAAAAAT-AAAAGATTTTGATTTAAAA
* * * * * * * *
8559322 TCATTTATAGGATTACAAAACCACTCAAAGCGAATAACAAGGCTTTCGAAGGCATGAGTGATTAT
65 TCATTTATAAGATTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGATGACATGAGTAACTAT
**
8559387 AAATGGACTTTTCTTCTCAATGGATGGCATCAACTTCATG
130 AAATGGACTTTTCTTCTCAATGGATGGCATCTGCTTCATG
* *
8559427 TTTCTCGATGCAAACATCCAATTATAATTGCTTTTAATAAAAAATAAAAGGGATTTTGATTTAAA
1 TTTCTCGATGCAAACATCCAATTATGATTGATTTTAATAAAAAATAAAA--GATTTTGATTTAAA
* * * * * * *
8559492 ATCATTTATATGATAATAACACCACTTAAAGCGAGTAACAAGGCTTTTGATCACATAAGCAACTA
64 ATCATTTATAAGATTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGATGACATGAGTAACTA
* * *
8559557 TAAATGGACCTTTCTTCTCAATGGATGGTATCTCCTTCACAT-
129 TAAATGGACTTTTCTTCTCAATGGATGGCATCTGCTT--CATG
* * **
8559599 TTTCT-AATGCAAACATCCAATTATTATCAATTTTAACT-AAAAATGAAAA-ATACTTTGATTTA
1 TTTCTCGATGCAAACATCCAATTATGATTGATTTTAA-TAAAAAAT-AAAAGAT--TTTGATTTA
* * * ** * *
8559661 AAGTCA-TTAGCAAGATTATAAAACCATTTAAAATGAGTAACAAGGCTTCCGATGACATGCGTAA
62 AAATCATTTA-TAAGATTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGATGACATGAGTAA
* * * **
8559725 --ATAAATAGACTTTTCTTCTCAATGGATAGCATCTACTTCACA
126 CTATAAATGGACTTTTCTTCTCAATGGATGGCATCTGCTTCATG
* * * * * **
8559767 TTTCTCAATGTAAGCATTCAATTAAGAGGGATTTTAACTAATAACAA-AAAAGATTTTGATTTAA
1 TTTCTCGATGCAAACATCCAATTATGATTGATTTTAA-TAA-AA-AATAAAAGATTTTGATTTAA
* * * * ** * * * * *
8559831 AATCATTTACAAGATTACAAAACCATTTAAGGAAAGTAACAAGGATTTCGATGGCAAGAATGACT
63 AATCATTTATAAGATTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGATGACATGAGTAACT
* * ** * **
8559896 ACAAATGGACTTTTTTTCTCAATGGATGATATATGCTTCACA
128 ATAAATGGACTTTTCTTCTCAATGGATGGCATCTGCTTCATG
* * * * * *
8559938 TTGCTCGAAGCAAACATCCAATTATGAATGATTTTAATGAAAAACAAAAAATATTTTGATTTAAG
1 TTTCTCGATGCAAACATCCAATTATGATTGATTTTAAT-AAAAA-ATAAAAGATTTTGATTTAAA
* * * * ** * ** * *
8560003 ATCATTTATAAGGTTATAAAAACATTTAAAGCGAGTAACAAAGCTTTATAAGGTATGAGTGACAA
64 ATCATTTATAAGATTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGATGACATGAGTAACTA
* * * * *
8560068 TAAATGGACTTTTATTGTCAATGGATGG-TTTTCGCTTCAGG
129 TAAATGGACTTTTCTTCTCAATGGATGGCATCT-GCTTCATG
* * * * * *
8560109 TTTC-CGAATTCAAACATCCAATTATGATCT-ATTTTAACTAGAAATATAAAAAAATTTGGTTTC
1 TTTCTCG-ATGCAAACATCCAATTATGAT-TGATTTTAA-TA-AAAAATAAAAGATTTTGATTTA
* * ** * * * * *
8560172 AAATTATTTATAAGATTATTAAACTGCTTAAATCGAGTAACAAGGCTTTTGAAGGCATGAATAAC
62 AAATCATTTATAAGATTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGATGACATGAGTAAC
* * * * * * **
8560237 TATAAGTGGACATTTCTTGTTAATGGATGGCTTTTGCTTCACC
127 TATAAATGGACTTTTCTTCTCAATGGATGGCATCTGCTTCATG
* * ** * *
8560280 TTTCTTGATGCAAATATCCAATTATGATTGATTTTAACCAAAAATAAAAGTGATTTTAATTTATA
1 TTTCTCGATGCAAACATCCAATTATGATTGATTTTAATAAAAAATAAAA--GATTTTGATTTAAA
* * *
8560345 ATCATTTATAAGAGTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGATGGCATGAGTGAA-T
64 ATCATTTATAAGATTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGATGACATGAGT-AACT
* ** *
8560409 ATAAATGGACTTTTCTTCTCAACGGATGGCATCCACTTTATG
128 ATAAATGGACTTTTCTTCTCAATGGATGGCATCTGCTTCATG
* * * *** *
8560451 TTTCCCTATGGAAACATCCAATTATGATATG-TTTTAACCCAAAATGAAAAACATTTTGATTTAA
1 TTTCTCGATGCAAACATCCAATTATGAT-TGATTTTAATAAAAAAT--AAAAGATTTTGATTTAA
** * * * * * * * ** * *
8560515 AATCATTTAT--TTTTATTAAACCACTAAAAACAAGTAATAAAGC-TTCTGAAGGTATTAGTGAC
63 AATCATTTATAAGATTATAAAACCACTTAAAGCGAGTAACAAGGCTTTC-GATGACATGAGTAAC
* * ** *
8560577 TATAAATGGACTTTTCTTGTCAATGGATGGCTTCCCCTTTATG
127 TATAAATGGACTTTTCTTCTCAATGGATGGCATCTGCTTCATG
* * * *
8560620 TTTCTCGAT-CAAAATATCCAATTATGATTGATTTTAACAAAAAATGAAAAACAGTTTTGATTTT
1 TTTCTCGATGC-AAACATCCAATTATGATTGATTTTAATAAAAAAT--AAAAGA-TTTTGATTTA
* * * * * *
8560684 AAATTATTTCT--GATTGATCAAAATATCATTTCCTTTAAAGCGAGTAATAAGACTTTCGATGGC
62 AAATCATTTATAAGATT-AT--AAA-ACCA----C-TTAAAGCGAGTAACAAGGCTTTCGATGAC
* * *
8560747 ATGAGTGA-TATAAATGGAC-CTT-TTCTCAATGGATGGCAT-TCACTTCATG
118 ATGAGTAACTATAAATGGACTTTTCTTCTCAATGGATGGCATCT-GCTTCATG
* * * * * * * *
8560796 TTCCT-GATTCATACATGCAATTATGATAAGA-TTTAACCAGAAACAAAAAAATATTTTGATTTA
1 TTTCTCGATGCAAACATCCAATTATGAT-TGATTTTAA-TA-AAA-AATAAAAGATTTTGATTTA
* ** * * * * * * * *
8560859 AAATCATTGATAACTTTCTAAAACTATTTAAAGTGACTAACAAGG-TGTTCGAAGCCATGAGTGA
62 AAATCATTTATAAGATTATAAAACCACTTAAAGCGAGTAACAAGGCT-TTCGATGACATGAGTAA
* * * * *
8560923 CTATAAATGTACTTTTCCTT-TCAGTTGATGG-TTTTCGCTTCATG
126 CTATAAATGGACTTTT-CTTCTCAATGGATGGCATCT-GCTTCATG
* * * * ** * *
8560967 TTT-TCATATTCAAACATTCAATTATTATCTG--TTTAACCATAAATGAAAATAATTTTGATTTA
1 TTTCTC-GATGCAAACATCCAATTATGAT-TGATTTTAATAAAAAAT-AAAA-GATTTTGATTTA
* * * * * * ** *
8561029 AAATCAATTATAAGATTATTAATCCACTTAAAGTGAGTAACAACGCTTTCGAAGGTATGAGTGAC
62 AAATCATTTATAAGATTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGATGACATGAGTAAC
* * * **
8561094 TATAAATGGACTTTTCTTGTCAATGCATGGCAT-TGGGTTCACA
127 TATAAATGGACTTTTCTTCTCAATGGATGGCATCT-GCTTCATG
* * ** ** ** *
8561137 TTTCCCAATGCAAACATCCAATTGCGATCAATTTTAACCAAAAATGAAAAAGATTTTTATTTAAA
1 TTTCTCGATGCAAACATCCAATTATGATTGATTTTAATAAAAAAT--AAAAGATTTTGATTTAAA
**** * * * * *
8561202 ATCATTTATAAGATTATAAAATGGTTTAAAGCGAGTAACAAGGCTTTCGAAGGCATAAGTGACTC
64 ATCATTTATAAGATTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGATGACATGAGTAACTA
*
8561267 TAAATTGACTTTTC
129 TAAATGGACTTTTC
8561281 ACATTTCCCA
Statistics
Matches: 1590, Mismatches: 354, Indels: 160
0.76 0.17 0.08
Matches are distributed among these distances:
167 3 0.00
168 43 0.03
169 266 0.17
170 286 0.18
171 797 0.50
172 54 0.03
173 11 0.01
174 6 0.00
175 39 0.02
176 36 0.02
177 7 0.00
178 14 0.01
179 25 0.02
180 3 0.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (169 bp):
TTTCTCGATGCAAACATCCAATTATGATTGATTTTAATAAAAAATAAAAGATTTTGATTTAAAAT
CATTTATAAGATTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGATGACATGAGTAACTATA
AATGGACTTTTCTTCTCAATGGATGGCATCTGCTTCATG
Found at i:8559874 original size:340 final size:338
Alignment explanation
Indices: 8559385--8560048 Score: 745
Period size: 340 Copynumber: 2.0 Consensus size: 338
8559375 ATGAGTGATT
* * ** *
8559385 ATAAATGGACTTTTCTTCTCAATGGATGGCATCAACTTCATGTTTCTCGATGCAAACATCCAATT
1 ATAAATAGACTTTTCTTCTCAATGGATAGCATCAACTTCACATTTCTCAATGCAAACATCCAATT
** * * * * *
8559450 ATAATTGCTTTTAATAAAAAATAAAAGGGATTTTGATTTAAAATCATTTATATGATAATAACACC
66 ATAAGGGATTTTAATAAAAAATAAAA-GGATTTTGATTTAAAATCATTTACAAGATAACAAAACC
** * * * *
8559515 ACTTAAAGCGAGTAACAAGGCTTTTGAT-CACATAA-GCAACTATAAATGGACCTTTCTTCTCAA
130 ACTTAAAGAAAGTAACAAGGATTTCGATGCA-AGAATG--ACTACAAATGGACCTTTCTTCTCAA
* * * * *
8559578 TGGATGGTATCTCCTTCACATT-TTCTAATGCAAACATCCAATTAT-TATCAATTTTAACT-AAA
192 TGGATGATATATCCTTCACATTGCTCGAA-GCAAACATCCAATTATGAAT-AATTTTAA-TGAAA
** * *
8559640 AATGAAAAATACTTTGATTTAA-AGTCA-TTAGCAAGATTATAAAACCATTTAAAATGAGTAACA
254 AACAAAAAATACTTTGATTTAAGA-TCATTTA-CAAGATTATAAAAACATTTAAAACGAGTAACA
*
8559703 AGGCTTCCGATGACATGCGTAA
317 AAGCTTCCGATGACATGCGTAA
* * * *
8559725 ATAAATAGACTTTTCTTCTCAATGGATAGCATCTACTTCACATTTCTCAATGTAAGCATTCAATT
1 ATAAATAGACTTTTCTTCTCAATGGATAGCATCAACTTCACATTTCTCAATGCAAACATCCAATT
*
8559790 A-AGAGGGATTTTAACTAATAACAA-AAAA-GATTTTGATTTAAAATCATTTACAAGATTACAAA
66 ATA-AGGGATTTTAA-TAA-AA-AATAAAAGGATTTTGATTTAAAATCATTTACAAGATAACAAA
* * * *
8559852 ACCATTTAAGGAAAGTAACAAGGATTTCGATGGCAAGAATGACTACAAATGGACTTTTTTTCTCA
127 ACCACTTAAAGAAAGTAACAAGGATTTCGAT-GCAAGAATGACTACAAATGGACCTTTCTTCTCA
* *
8559917 ATGGATGATATATGCTTCACATTGCTCGAAGCAAACATCCAATTATGAATGATTTTAATGAAAAA
191 ATGGATGATATATCCTTCACATTGCTCGAAGCAAACATCCAATTATGAATAATTTTAATGAAAAA
* * * *
8559982 CAAAAAATATTTTGATTTAAGATCATTTATAAGGTTATAAAAACATTTAAAGCGAGTAACAAAGC
256 CAAAAAATACTTTGATTTAAGATCATTTACAAGATTATAAAAACATTTAAAACGAGTAACAAAGC
8560047 TT
321 TT
8560049 TATAAGGTAT
Statistics
Matches: 269, Mismatches: 43, Indels: 24
0.80 0.13 0.07
Matches are distributed among these distances:
339 2 0.01
340 240 0.89
341 16 0.06
342 9 0.03
343 2 0.01
ACGTcount: A:0.40, C:0.15, G:0.13, T:0.33
Consensus pattern (338 bp):
ATAAATAGACTTTTCTTCTCAATGGATAGCATCAACTTCACATTTCTCAATGCAAACATCCAATT
ATAAGGGATTTTAATAAAAAATAAAAGGATTTTGATTTAAAATCATTTACAAGATAACAAAACCA
CTTAAAGAAAGTAACAAGGATTTCGATGCAAGAATGACTACAAATGGACCTTTCTTCTCAATGGA
TGATATATCCTTCACATTGCTCGAAGCAAACATCCAATTATGAATAATTTTAATGAAAAACAAAA
AATACTTTGATTTAAGATCATTTACAAGATTATAAAAACATTTAAAACGAGTAACAAAGCTTCCG
ATGACATGCGTAA
Found at i:8561605 original size:171 final size:168
Alignment explanation
Indices: 8561395--8562219 Score: 655
Period size: 171 Copynumber: 4.8 Consensus size: 168
8561385 AGGCTTTGAC
* * * * * *
8561395 AGCATGAGGGACTATAAATGGACTTT-TCTTATCAATGGATGGCATCCACTTCATGTTT-CAAGA
1 AGCATGAGTGACTATAAATGGAATTTCT-TTGTCAATGGATGGCATCCGCTTCACGTTTCCCA-A
* *
8561458 TGTAAGCATCCAATTATGATTAATTTTAACCACAAAA-AAAGAAGATTTTGATTTGAAGTCATTT
64 TGCAAACATCCAATTATGATTAATTTTAACCA-AAAAGAAA-AAGATTTTGA-TTGAAGTCATTT
* *
8561522 TTAAGGTTATAAAACCATTCAAAGTGAGTAACAAGCCTTTTAAA
126 ATAAGATTATAAAACCATTCAAAGTGAGTAACAAG-CTTTTAAA
* * * * * * * * *
8561566 AGTATGACTGACTATAAATGGAATTTCTTTGTGAATGGATGCCTTTCTCTTCACATTTCCCAACG
1 AGCATGAGTGACTATAAATGGAATTTCTTTGTCAATGGATGGCATCCGCTTCACGTTTCCCAATG
** * * * * * *
8561631 CAAGTATCTAATTATGATCT-GTTTTAACCAAAAATGAAAAACAGTATGATTGAAAATCATTTAT
66 CAAACATCCAATTATGAT-TAATTTTAACCAAAAA-GAAAAAGATTTTGATTG-AAGTCATTTAT
* * * * *
8561695 ATGATTATGATACCATTCAATGTGAGTAACAAAGCTTTCAAA
128 AAGATTATAAAACCATTCAAAGTGAGTAAC-AAGCTTTTAAA
* * * * * *
8561737 GGCATGAGTGACTATAAATGG-ATTTTTTTGTCAATGGATGGCATTCGCGTCACCTTTCCCAATC
1 AGCATGAGTGACTATAAATGGAATTTCTTTGTCAATGGATGGCATCCGCTTCACGTTTCCCAATG
* * * * *
8561801 CAAACATCCAATTATGATTTATTTCAACCAAAAATGAAAAAGATTTTGAATTAAAGTAATTTGTA
66 CAAACATCCAATTATGATTAATTTTAACCAAAAA-GAAAAAGATTTTG-ATTGAAGTCATTTATA
* * * *
8561866 ATATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTTGAA
129 AGATTATAAAACCATTCAAAGTGAGTAACAA-GCTTTTAAA
* * * * * *
8561907 AGCATGAGTGACTACAAATGGACATTTC-TTGTTAATAGATTGCTTCCGCTTCATGTTTCCCAAT
1 AGCATGAGTGACTATAAATGGA-ATTTCTTTGTCAATGGATGGCATCCGCTTCACGTTTCCCAAT
* * * * * *
8561971 GCAAACATCCAATTAT-AATATATTTTAACCAAATATGGAAAATATTTTGATTTAAAATCATTTA
65 GCAAACATCCAATTATGATTA-ATTTTAACCAAA-AAGAAAAAGATTTTGA-TTGAAGTCATTTA
* * * * *
8562035 TAGGAATATTAAAGCACTT-AAAGCT-AGTAACAAGGCTTTTGAA
127 TAAGATTATAAAACCA-TTCAAAG-TGAGTAACAA-GCTTTTAAA
* * * * * * **
8562078 GGAATGAGTGACTATAAATGGACTTT-TCTTATCAATGGATGGCATTCGCTTCAAGTCACCCAAT
1 AGCATGAGTGACTATAAATGGAATTTCT-TTGTCAATGGATGGCATCCGCTTCACGTTTCCCAAT
* * * ** *
8562142 GCAAACATTCAATTATAATTGATTTTAACCATAAACA-AAAAAGATTTCAATTGAAAATCATTTA
65 GCAAACATCCAATTATGATTAATTTTAACCA-AAA-AGAAAAAGATTTTGATTG-AAGTCATTTA
8562206 TAAGATTATAAAAC
127 TAAGATTATAAAAC
8562220 TGTCACAACC
Statistics
Matches: 516, Mismatches: 115, Indels: 46
0.76 0.17 0.07
Matches are distributed among these distances:
169 3 0.01
170 144 0.28
171 348 0.67
172 21 0.04
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (168 bp):
AGCATGAGTGACTATAAATGGAATTTCTTTGTCAATGGATGGCATCCGCTTCACGTTTCCCAATG
CAAACATCCAATTATGATTAATTTTAACCAAAAAGAAAAAGATTTTGATTGAAGTCATTTATAAG
ATTATAAAACCATTCAAAGTGAGTAACAAGCTTTTAAA
Found at i:8561897 original size:341 final size:338
Alignment explanation
Indices: 8561338--8562219 Score: 941
Period size: 341 Copynumber: 2.6 Consensus size: 338
8561328 AAAAAATTTC
* * * * * *
8561338 GATTTAAAAACATTTATATGATTATGAACCATTTAAAACTAGTGACAAGGCTTTGACA-GCATGA
1 GATTTAAAATCATTTATATGATTATGAACCACTT-AAAGTAGTAACAAGGCTTTCAAAGGCATGA
* * * * * * *
8561402 GGGACTATAAATGGACTTTTCTTATCAATGGATGGCATCCACTTCATGTTT-CAAGATGTAAGCA
65 GTGACTATAAATGGACTTTTCTTATCAATGGATGGCATTCGCTTCAAGTTTCCCA-ATGCAAACA
* * * *
8561466 TCCAATTATGATTAATTTTAACCACAAAAAAAGAAGATTTTGATTTGAAGTCATTTTTAAGGTTA
129 TCCAATTATGATTAATTTTAACCA-AAAAAAA-AAGATTTTGAATTAAAGTCATTTATAAGATTA
* * *
8561531 TAAAACCATTCAAAGTGAGTAACAAGCCTTTTAAAAGTATGACTGACTATAAATGGA-ATTTCTT
192 TAAAACCATTCAAAGCGAGTAACAAGCCTTTTAAAAGCATGACTGACTACAAATGGACATTTC-T
* * * ** * * * *
8561595 TGTGAATGGA-TGCCTTTCTCTTCACATTTCCCAACGCAAGTATCTAATTATGATCTGTTTTAAC
256 TGTGAATAGATTG-CTTCCGCTTCACATTTCCCAACGCAAACATCCAATTATAATATATTTTAAC
8561659 CAAAAATGAAAAACAGTAT
320 CAAAAATGAAAAACAGTAT
* * *
8561678 GATTGAAAATCATTTATATGATTATGATACCA-TTCAATGTGAGTAACAAAGCTTTCAAAGGCAT
1 GATTTAAAATCATTTATATGATTATGA-ACCACTT-AAAGT-AGTAACAAGGCTTTCAAAGGCAT
* * * ** *
8561742 GAGTGACTATAAATGGA-TTTTTTTGTCAATGGATGGCATTCGCGTCACCTTTCCCAATCCAAAC
63 GAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCATTCGCTTCAAGTTTCCCAATGCAAAC
* * * * *
8561806 ATCCAATTATGATTTATTTCAACCAAAAATGAAAAAGATTTTGAATTAAAGTAATTTGTAATATT
128 ATCCAATTATGATTAATTTTAACCAAAAA--AAAAAGATTTTGAATTAAAGTCATTTATAAGATT
* * * *
8561871 ATAAAACCATTTAAAGCGAGTAACAAGGCTTTTGAAAGCATGAGTGACTACAAATGGACATTTCT
191 ATAAAACCATTCAAAGCGAGTAACAAGCCTTTTAAAAGCATGACTGACTACAAATGGACATTTCT
* ** *
8561936 TGTTAATAGATTGCTTCCGCTTCATGTTTCCCAATGCAAACATCCAATTATAATATATTTTAACC
256 TGTGAATAGATTGCTTCCGCTTCACATTTCCCAACGCAAACATCCAATTATAATATATTTTAACC
* * * * *
8562001 AAATATGGAAAATATTTT
321 AAAAATGAAAAACAGTAT
* * * * ** *
8562019 GATTTAAAATCATTTATAGGAATATTAAAGCACTTAAAGCTAGTAACAAGGCTTTTGAAGGAATG
1 GATTTAAAATCATTTATATGATTA-TGAACCACTTAAAG-TAGTAACAAGGCTTTCAAAGGCATG
**
8562084 AGTGACTATAAATGGACTTTTCTTATCAATGGATGGCATTCGCTTCAAGTCACCCAATGCAAACA
64 AGTGACTATAAATGGACTTTTCTTATCAATGGATGGCATTCGCTTCAAGTTTCCCAATGCAAACA
* * * * *
8562149 TTCAATTATAATTGATTTTAACCATAAACAAAAAAGA-TTTCAATTGAAAATCATTTATAAGATT
129 TCCAATTATGATTAATTTTAACCA-AAA-AAAAAAGATTTTGAATT-AAAGTCATTTATAAGATT
8562213 ATAAAAC
191 ATAAAAC
8562220 TGTCACAACC
Statistics
Matches: 446, Mismatches: 81, Indels: 28
0.80 0.15 0.05
Matches are distributed among these distances:
340 34 0.08
341 283 0.63
342 125 0.28
343 3 0.01
344 1 0.00
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (338 bp):
GATTTAAAATCATTTATATGATTATGAACCACTTAAAGTAGTAACAAGGCTTTCAAAGGCATGAG
TGACTATAAATGGACTTTTCTTATCAATGGATGGCATTCGCTTCAAGTTTCCCAATGCAAACATC
CAATTATGATTAATTTTAACCAAAAAAAAAAGATTTTGAATTAAAGTCATTTATAAGATTATAAA
ACCATTCAAAGCGAGTAACAAGCCTTTTAAAAGCATGACTGACTACAAATGGACATTTCTTGTGA
ATAGATTGCTTCCGCTTCACATTTCCCAACGCAAACATCCAATTATAATATATTTTAACCAAAAA
TGAAAAACAGTAT
Found at i:8562931 original size:171 final size:170
Alignment explanation
Indices: 8562625--8563147 Score: 581
Period size: 171 Copynumber: 3.1 Consensus size: 170
8562615 CCTAAAATAT
* * * * * ** *
8562625 GATTATGATACCATTCAATGCGAGTAACAAAGCTTTCGAAGGCATGAGTGACTATAAATGGA-TT
1 GATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTTAAAAGCATGAGTGACTATAAATGGACTT
* * * * *
8562689 TTTTTATCAATGGATGGCATTCGCTTCATGTTTCCCAATCCAAACATCCAATTATGATTTATTTC
66 TTCTTGTCAATGGATGGCATTCGCTTCATGTTTCCCAATGCAAACATCCAATTAT-AATTATTTT
* **
8562754 AACCAAAAATGAAAAAGATTTTGAATTAAAGTAATTTGTAG
130 AACCAAAAATGAAAAAGATTTTGAATTAAAATAATTCATAG
* *
8562795 TATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTTAAAAGCATGAGTGACTATAAATGGACAT
1 GATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTTAAAAGCATGAGTGACTATAAATGGACTT
* *
8562860 TTCTTGTCAATAGATTGC-TTCAGCTTCATGTTTCCCAATGCAAACATCCAATTATAATATATTT
66 TTCTTGTCAATGGATGGCATTC-GCTTCATGTTTCCCAATGCAAACATCCAATTATAAT-TATTT
* * ** * *
8562924 TAACCAAATATGGAAACTATTTTGATTTAAAATCATTCATAG
129 TAACCAAAAATGAAAAAGATTTTGAATTAAAATAATTCATAG
* * * *
8562966 GATTATTAAAGCACTTAAAGCTAGTAACAAGGCTTTTGAAGAA--ATGAGTGACTATAAATGGAC
1 GATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTT-AA-AAGCATGAGTGACTATAAATGGAC
* **
8563029 TTTTCTTGTCAATGGATGGCATTCGCTTCAAGTCACCCAATGCAAACATCCAATTATAATTGATT
64 TTTTCTTGTCAATGGATGGCATTCGCTTCATGTTTCCCAATGCAAACATCCAATTATAATT-ATT
* * * * * *
8563094 TTAACCATAAA-CAAAAA-ATATTTCAATTGAAAATCATTTATAA
128 TTAACCAAAAATGAAAAAGAT-TTTGAATT-AAAATAATTCATAG
8563137 GATTATAAAAC
1 GATTATAAAAC
8563148 TGTCACAACC
Statistics
Matches: 296, Mismatches: 48, Indels: 17
0.82 0.13 0.05
Matches are distributed among these distances:
169 2 0.01
170 68 0.23
171 219 0.74
172 5 0.02
173 2 0.01
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (170 bp):
GATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTTAAAAGCATGAGTGACTATAAATGGACTT
TTCTTGTCAATGGATGGCATTCGCTTCATGTTTCCCAATGCAAACATCCAATTATAATTATTTTA
ACCAAAAATGAAAAAGATTTTGAATTAAAATAATTCATAG
Found at i:8566808 original size:170 final size:169
Alignment explanation
Indices: 8566441--8567074 Score: 519
Period size: 171 Copynumber: 3.7 Consensus size: 169
8566431 GATGGCATCC
* ** *
8566441 GCTTTATGTTTCTCGATGCAAACATCCAATTATGAGGGATTTTGACCAAAAATGAAAAAGATTTT
1 GCTTCATGTTTCTC-ATGCAAACATCCAATTATGATCGATTTTAACCAAAAATGAAAAAGATTTT
* * * *
8566506 GATTTAAAATCATTTATAAGATTACAAAACCACTTAAAGCGACTAACAAGGCTTTCGATGGCAGG
65 GATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGACTAACAACGCTTTCGAGGGCAGG
* *
8566571 AATAACTATAAATAGACTTTTCTTCCAATAGATGGCATAT
130 AATAACTATAAATAGAATTTTCTTCCAATAGATGACATAT
* * * * * * *
8566611 GTTTCATGTTTGTCAATACAGACATCCAATTATAATTGATTTTAACCAAAAATGAAAAA-CTTTT
1 GCTTCATGTTTCTC-ATGCAAACATCCAATTATGATCGATTTTAACCAAAAATGAAAAAGATTTT
* * * * *
8566675 GATTTAAAATAATTTATAAGATTATAAAACTATTTAAATCGAGTAACAACGCTTTTGAGGGC-GT
65 GATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGACTAACAACGCTTTCGAGGGCAG-
* * * * * * *
8566739 GAGTGACTATAAATGGAATTTTCTTATCAATGGATGACTTTT
129 GAATAACTATAAATAGAATTTTCTT-CCAATAGATGACATAT
* * * * *
8566781 GCTTCATGTTTCTCATTGCAAACATCCAATTGTGATCGATGTCAACCAAATACGAAAAAGATTTT
1 GCTTCATGTTTCTCA-TGCAAACATCCAATTATGATCGATTTTAACCAAAAATGAAAAAGATTTT
* * * * * * *** *
8566846 GATTTAAATTCATTTATAAGACTATAAAACCATTT-AAGCCAAATAACAATGCTTTCAATCCCAT
65 GATTTAAAATCATTTATAAGATTATAAAACCATTTAAAG-CGACTAACAACGCTTTCGAGGGCAG
* * * * * * * *
8566910 TAGTGACTACAAA-AGGACTTTT-TTCGTTAAAAAATTG-CAT-T
129 GAATAACTATAAATA-GAATTTTCTTC--CAATAGA-TGACATAT
** * * *
8566951 CGCTTCACATTTCTCAATGCAAACATTCAATTATGATCGATTTTAACTAATAATG-AAAAGTATT
1 -GCTTCATGTTTCTC-ATGCAAACATCCAATTATGATCGATTTTAACCAAAAATGAAAAAG-ATT
* * * * * * *
8567015 TGGATTTAAAATCATTTATAAGAATACAAAACCATTTAAAGCAAGTACCAAGGCTTTCGA
63 TTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGACTAACAACGCTTTCGA
8567075 AAGTATGAGT
Statistics
Matches: 367, Mismatches: 83, Indels: 27
0.77 0.17 0.06
Matches are distributed among these distances:
168 1 0.00
169 79 0.22
170 116 0.32
171 165 0.45
172 6 0.02
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.34
Consensus pattern (169 bp):
GCTTCATGTTTCTCATGCAAACATCCAATTATGATCGATTTTAACCAAAAATGAAAAAGATTTTG
ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGACTAACAACGCTTTCGAGGGCAGGA
ATAACTATAAATAGAATTTTCTTCCAATAGATGACATAT
Found at i:8567402 original size:171 final size:171
Alignment explanation
Indices: 8567090--8567471 Score: 385
Period size: 171 Copynumber: 2.2 Consensus size: 171
8567080 TGAGTAAAAT
* * * **
8567090 CATTCGCTTCACGTTTCCCAAAGT-GAAA-ATCCAATTATGATTGATTGTCGCCAAAAATGAAAA
1 CATTCGGTTCACGTTTCCC-AA-TCAAAACATCCAATTATGATCGATTGTAACCAAAAATGAAAA
* * *** * *
8567153 AGATTTTGATTTAAAATCATTTATACGATTATAAAACCATTTAAAGTGAGTGACAATGCTTTCGA
64 AGATTTTGATTAAAAATCATTCATACGATTATAAAACCATTTAAACCAAGTAACAAGGCTTTCGA
**** * * *
8567218 TCTTATGAGTGACTATAAAAGTACCTTTCTTATCAATGAATGG
129 AAGCATAAGTGACTATAAAAGGACCTTTCTTATCAATGAATAG
* * * * * *
8567261 CATT-GGCTTCAGGTTTCCCAATCCAAACCTCCAATTATGATCGATTTTAACCCAAAATGAAATA
1 CATTCGG-TTCACGTTTCCCAATCAAAACATCCAATTATGATCGATTGTAACCAAAAATGAAAAA
* * *
8567325 TATTTTGATTAAAAATCATTCATAAGGA-TATAAAACCATTTAAACCAAGTAACAAGGCTTTTGA
65 GATTTTGATTAAAAATCATTCAT-ACGATTATAAAACCATTTAAACCAAGTAACAAGGCTTTCGA
* ** *
8567389 AAGCATAAGTGACTATAAATGGATTTTTCTTATCAATGGATAG
129 AAGCATAAGTGACTATAAAAGGACCTTTCTTATCAATGAATAG
* * *
8567432 CTTTCGGTTCACGTTTCCTAATGAAAACATCCAATTATGA
1 CATTCGGTTCACGTTTCCCAATCAAAACATCCAATTATGA
8567472 CAAAAAAAAA
Statistics
Matches: 169, Mismatches: 37, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
169 1 0.01
170 6 0.04
171 157 0.93
172 5 0.03
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (171 bp):
CATTCGGTTCACGTTTCCCAATCAAAACATCCAATTATGATCGATTGTAACCAAAAATGAAAAAG
ATTTTGATTAAAAATCATTCATACGATTATAAAACCATTTAAACCAAGTAACAAGGCTTTCGAAA
GCATAAGTGACTATAAAAGGACCTTTCTTATCAATGAATAG
Found at i:8573945 original size:171 final size:170
Alignment explanation
Indices: 8573204--8577617 Score: 3678
Period size: 170 Copynumber: 26.0 Consensus size: 170
8573194 AATGGTATTC
* * * * * * * * *
8573204 GCTTCAGGGTTCCCAATCCAAACCTCCAATTATGATCGTTTTTAACCTAAAATGAAATATATTTT
1 GCTTCATGTTTCCTAATGCAAACATCCAATTATGATTGATTTTAACCAAAAATGAAAAATATTTT
* * * * *
8573269 GATTTAAAATCATTCATAAGAATATAAAACCATTTAAACTGAGTAACAACGCTTTCGAAAGCATA
66 GATTTAAAATCATTTATAAGATTATAAAACCATTTAAAC-GAGTAACAAGGCTTTCGAAGGCATG
* *
8573334 AGGGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCA
130 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC-TTCT
* * * * ** * ** * *
8573376 G-TTCATGTTTCTTGATGAAAACATCCAATTATAATCCATTTTAA-TAAAAAACAAAAA-AATTC
1 GCTTCATGTTTCCTAATGCAAACATCCAATTATGATTGATTTTAACCAAAAATGAAAAATATTTT
* * * * * *
8573438 AATTTAAAATCATTTATAATATTATAAAACCAATTAAAACAAGTAACAAGGCTTAC-ATGGCATG
66 GATTTAAAATCATTTATAAGATTATAAAACC-ATTTAAACGAGTAACAAGGCTTTCGAAGGCATG
* * * * *
8573502 AGTGATTATAAATGGACTTTTCTTCTCAGTGGA-AG-TTAT
130 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTCT
* * * * *
8573541 CCCTTCATGTTTCCTGATGCAAACATCCAATTATAATTGATTTTAACCAAAAACGAAAAATATGT
1 -GCTTCATGTTTCCTAATGCAAACATCCAATTATGATTGATTTTAACCAAAAATGAAAAATATTT
* * * * *
8573606 TGATTTAAAATCATTGATAAGATTATTAAACCATTTAATGCAAGTAACAAGGCTTTTGAAGGCAT
65 TGATTTAAAATCATTTATAAGATTATAAAACCATTTAA-ACGAGTAACAAGGCTTTCGAAGGCAT
* * * *
8573671 GAGTGATTATAAAATGGACTTTTCTTGTCAAGGGATGGCATCC
129 GAGTGACTAT-AAATGGACTTTTCTTGTCAATGGATGGCTTCT
* * * * * *
8573714 ACTTCAAGTTTCGC-GATGCAAACATCCAATTGTGATTGATTTTAACCCAAAATTAAAAATATTT
1 GCTTCATGTTTC-CTAATGCAAACATCCAATTATGATTGATTTTAACCAAAAATGAAAAATATTT
* * * * *
8573778 TGATTCAAAATTATTCATAGGATTATAAAACCATTTAATACGAGTAATAAGGCTTTCGAAGGCAT
65 TGATTTAAAATCATTTATAAGATTATAAAACCATTTAA-ACGAGTAACAAGGCTTTCGAAGGCAT
*
8573843 AAGTGACTATAAATGGACTTTTCTTGTCAATGGATAGG-TTCT
129 GAGTGACTATAAATGGACTTTTCTTGTCAATGGAT-GGCTTCT
* * * *
8573885 GCTTCATGTTTCCTGATGAAAACATCCAATTATGATATG-TTTTAATCAGAAATGAAAAATATTT
1 GCTTCATGTTTCCTAATGCAAACATCCAATTATGAT-TGATTTTAACCAAAAATGAAAAATATTT
* * * * * **
8573949 TGATTTAAAATCATTTATAAGATTATTAAACCACTTAAAGCAACTAACAAGACTTTTAAAGGCAT
65 TGATTTAAAATCATTTATAAGATTATAAAACCATTTAAA-CGAGTAACAAGGCTTTCGAAGGCAT
8574014 GAGTGACTATAAATGGACTTTTCTTGTCAATGGATTGTG-TT-T
129 GAGTGACTATAAATGGACTTTTCTTGTCAATGGA-TG-GCTTCT
* * * * *
8574056 GC-TCAATGTTT-CTCAATGCAAACATCCAATTATGATTGACTTTAGCTAGAAATGAAAAACATT
1 GCTTC-ATGTTTCCT-AATGCAAACATCCAATTATGATTGATTTTAACCAAAAATGAAAAATATT
** * * * ** *
8574119 TCAATTTAAAATCATTTATAGGATTATAAAACAATTTAAAGAGAGTAATGAGGCTTTCGATGGCA
64 TTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAA-CGAGTAACAAGGCTTTCGAAGGCA
* * *
8574184 TGAGTGACTACAAATGGACTTTGCTTGTCAATGGATGG-TGTCA
128 TGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCT-TCT
* ** * * ** * * ** *
8574227 ACTTCACATTTCCCAAAGTGAA-ATCCAAGTATGATTGATTTTAACGAAAAACAAAAAAGATTTT
1 GCTTCATGTTTCCTAATGCAAACATCCAATTATGATTGATTTTAACCAAAAATGAAAAATATTTT
* * * * *
8574291 GATTGAAAATCATTTATAAGATTATAAAACCAATTAAAGTGAGCAACAAGACTTTCGAAGGCATG
66 GATTTAAAATCATTTATAAGATTATAAAACCATTTAAA-CGAGTAACAAGGCTTTCGAAGGCATG
* * * * * ** *
8574356 AATCACTATAATTGGA-ATTTCTTCTCAAAAGATGGCATC-
130 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTCT
* ** * * * *
8574395 GCTACACATTT-TTAGATGGAGAA-ATCCAATGATGATCGATTTTAACCAAAAATGAAAAATATT
1 GCTTCATGTTTCCTA-ATGCA-AACATCCAATTATGATTGATTTTAACCAAAAATGAAAAATATT
* ** * * *
8574458 TTGATTGAAAATCATGGATAAGATTATAAAACCA-TTAAATGCAAGTAACAAGGCTTTTGAATGC
64 TTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAA--CGAGTAACAAGGCTTTCGAAGGC
*
8574522 ATGAGTGACTATAAATGGACTTTTCTTG-CTAATGGGTGGCTTCT
127 ATGAGTGACTATAAATGGACTTTTCTTGTC-AATGGATGGCTTCT
* * * *
8574566 GTTTCATGTTTCCCT-ATGCAAACATCCAATTATGATCTG-TTTT-ACCAGAAATGAAAAACAAT
1 GCTTCATGTTT-CCTAATGCAAACATCCAATTATGAT-TGATTTTAACCAAAAATGAAAAATATT
* * * ** * * *
8574628 TGGATTTAAAATCATTTATAAGATTATTAAACCACTTAAGGTGACTAACAAGGCTTTTGAAGGTA
64 TTGATTTAAAATCATTTATAAGATTATAAAACCATTTAA-ACGAGTAACAAGGCTTTCGAAGGCA
* *
8574693 TGAGTGACTATAAATGGACTTTTCTTGTCAATGAATTGCATTC-
128 TGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC-TTCT
* * * * * * * *
8574736 GTTTCATGTCT-CTCAATGTAAACATCCAATTATGATTTATTGTAACTAGAAATGAAAAACATTT
1 GCTTCATGTTTCCT-AATGCAAACATCCAATTATGATTGATTTTAACCAAAAATGAAAAATATTT
* *
8574800 TGATTTAAAATCATTTATAAGATTATAAAACCATTTGAAGA-GAGTAACAAAGCTTTCGATGGCA
65 TGATTTAAAATCATTTATAAGATTATAAAACCATTT-AA-ACGAGTAACAAGGCTTTCGAAGGCA
* * * ** **
8574864 TGAGTGACTATAAATAGACATTGCTTGTCAATGTCTGGGATCT
128 TGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTCT
* * * * *
8574907 GCTTCTTGTTTCCCAAAATG-AAA-ATCCAGTTATGATTGATTTTAA-CAAAAA-AAAAAAGATT
1 GCTTCATGTTT-CC-TAATGCAAACATCCAATTATGATTGATTTTAACCAAAAATGAAAAATATT
* * * * * *
8574968 TTGATTGAAAATCATTTATAAGATTATAAAATCATTTAAAGCGAGCAATAAGACTTTCGATGGCA
64 TTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAA-CGAGTAACAAGGCTTTCGAAGGCA
* ** * * * * ** *
8575033 TAAACGACTAT-AATTGTCAATTTCTTTTCAATAAATGGCATGC-
128 TGAGTGACTATAAATGGAC-TTTTCTTGTCAATGGATGGC-TTCT
* * ** * * *
8575076 GCTTCACGTTTTCC-AATGCAAAAATCC-A--ATGATCAATTTGAACAAAAAATGAAGAATATTT
1 GCTTCATG-TTTCCTAATGCAAACATCCAATTATGATTGATTTTAACCAAAAATGAAAAATATTT
* * * * *
8575137 TGATTTAAAATCATTGATTAGATTATAAAACCATTTAATGCGAGTAACAAGG-TTTCAAAGGCTT
65 TGATTTAAAATCATTTATAAGATTATAAAACCATTTAA-ACGAGTAACAAGGCTTTCGAAGGCAT
8575201 GAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTATC-
129 GAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCT-TCT
* * * * * *
8575243 GCTTCATGTTTCCCAATGCAACCATCCAATTATAATCTG-TTTTAACTAAAAATG-AAAACATTC
1 GCTTCATGTTTCCTAATGCAAACATCCAATTATGAT-TGATTTTAACCAAAAATGAAAAATATTT
* * * *
8575306 CGATTTAAAATCATTTATAAGATTATTAAACCACTTAAA-GAGACTAACAAGGCTTTCAAAGGCA
65 TGATTTAAAATCATTTATAAGATTATAAAACCATTTAAACGAG--TAACAAGGCTTTCGAAGGCA
* * * * **
8575370 TAAGTGACTATAAATGGACTTTTCTTATTAATAGATTCCATTC-
128 TGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC-TTCT
* * ** * * * *
8575413 GCTTCTTGTTTCCTAATGTAAACATTGAATTATGAATGATTTTAACCAAAACTGAAAAAGAATTT
1 GCTTCATGTTTCCTAATGCAAACATCCAATTATGATTGATTTTAACCAAAAATGAAAAATATTTT
* * * * * *
8575478 GGTTTAAAATCATTTATAAGATTAT-CAATCATTTAAA-GAAAGCAACAAGGCTTTCGATGGTAT
66 GATTTAAAATCATTTATAAGATTATAAAACCATTTAAACG--AGTAACAAGGCTTTCGAAGGCAT
* * * *
8575541 GAGTGACTATAAATGGACTGTTCTTCTCAATAGATGGCTTCC
129 GAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTCT
* * * * * *
8575583 ACTTCATGTTTCCCGAA-GCAAAAATCCAATTGTGATT-ATTTTAACCAAAAACGAAAAAGATTT
1 GCTTCATGTTT-CCTAATGCAAACATCCAATTATGATTGATTTTAACCAAAAATGAAAAATATTT
* * * * ** * *
8575646 TGATTGAACATCATTTATAAGATTATAAAACCATTTAAAGCAAGCAACAAGAATTTTGATGGCAT
65 TGATTTAAAATCATTTATAAGATTATAAAACCATTTAAA-CGAGTAACAAGGCTTTCGAAGGCAT
* * * * * *
8575711 GAGTGACTATAATTGGAATTTT-ATGCTCAATGGATAGCGTGT
129 GAGTGACTATAAATGGACTTTTCTTG-TCAATGGATGGCTTCT
** * * * ** ** *
8575753 GCTTCATGTTTTTTAATGCAAAAATCCAATGATGATTGATTTTAAGCATGAACAAAAAATATTTG
1 GCTTCATGTTTCCTAATGCAAACATCCAATTATGATTGATTTTAACCAAAAATGAAAAATATTTT
* * * * * * * **
8575818 GATTTAAAAACATTGATAAGATTATAAAAGCATTCAAAGCGACTAACAAAGATTTC-AATTTCAT
66 GATTTAAAATCATTTATAAGATTATAAAACCATTTAAA-CGAGTAACAAGGCTTTCGAA-GGCAT
* * * * *
8575882 GAATCACTATAAAATGGACTTTTCTTCTCAATAGATGGCATCT
129 GAGTGACTAT-AAATGGACTTTTCTTGTCAATGGATGGCTTCT
* * * * ** *
8575925 GCTTCACT-TTCCCCAATGCAAACATCCTATTATGAATGATTTTAATGAAAAATTAAAAATATTT
1 GCTTCA-TGTTTCCTAATGCAAACATCCAATTATGATTGATTTTAACCAAAAATGAAAAATATTT
* ** * * * *
8575989 TGATTTAAAATTATTTATAAGATTATAAAAATACTTAAATGAGTAACAAAGCTTTCAAAGGCATG
65 TGATTTAAAATCATTTATAAGATTATAAAACCATTTAAACGAGTAACAAGGCTTTCGAAGGCATG
* * *
8576054 AGTGACTATAAGTGGACTTTTCTTATCAATGGATGTCTT-T
130 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTCT
** * ** *
8576094 GCTTCACATTT-CTCAATACAAACATCCAATTATGATCT-ATTTTAATAAAAAATGAAAAAAATT
1 GCTTCATGTTTCCT-AATGCAAACATCCAATTATGAT-TGATTTTAACCAAAAATGAAAAATATT
** * * * * * *
8576157 TAAATTGAAAATCATTTATAACATTATAAAACCACTTAGAGCGAGCAACAAGG-TGTTTGAAGGC
64 TTGATTTAAAATCATTTATAAGATTATAAAACCATTTA-AACGAGTAACAAGGCT-TTCGAAGGC
* * * * *
8576221 ATGAGT-ACTATAAATGCACTTTTCTTCTTAGTGAATGGCATTC-
127 ATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC-TTCT
* * * * *
8576264 ACTTCATGATTCCCAATGAAAACATCCAATTCTGATTGATTTTAA-CAAGAAATGAAAAATATTT
1 GCTTCATGTTTCCTAATGCAAACATCCAATTATGATTGATTTTAACCAA-AAATGAAAAATATTT
* * ** *
8576328 TGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCCAATAACAAGGCTCACGATGGCAT
65 TGATTTAAAATCATTTATAAGATTATAAAACCATTTAAA-CGAGTAACAAGGCTTTCGAAGGCAT
* * * *
8576393 AAGTGACTATAAATAGACTTTTTTTATCAATGGATGG-TATCT
129 GAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCT-TCT
* ** * * * * ** *
8576435 ACTTCACATTT-CTCAGTGCAAACATCAAATTATGA-GGAATTTTAGCCAAAAACAAAAAAGATT
1 GCTTCATGTTTCCT-AATGCAAACATCCAATTATGATTG-ATTTTAACCAAAAATGAAAAATATT
* * * * * * *
8576498 TCGATTTAAAATCA-ATACAAGATTATAAAACCATTTAAAGAGAGTAACAAGGCTGTCGATGTCA
64 TTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAA-CGAGTAACAAGGCTTTCGAAGGCA
** * * * *
8576562 TGAGTGACTCGAAGTGGACGTTTCTTGTTAATGGATGGCTTTT
128 TGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTCT
* * * ** *
8576605 GCTTCATGTTTCTTTATGCAAACATCTAATTATGATCAATTTTAACTAAAAA-GAAAAAATATTT
1 GCTTCATGTTTCCTAATGCAAACATCCAATTATGATTGATTTTAACCAAAAATG-AAAAATATTT
* *
8576669 TGATTTAAAATCATTTAT-AGTATTATAAAATCATTTAAAGCAAGTAACAAGGC-TTC-AATGGC
65 TGATTTAAAATCATTTATAAG-ATTATAAAACCATTTAAA-CGAGTAACAAGGCTTTCGAA-GGC
* * * * *
8576731 ATGAGTGATTATAAATAGACTTTTCTTTTCAATGTAAGGCATTC-
127 ATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC-TTCT
* * * * *
8576775 -CTCCATGTTTCCTAATGTAAACATCCAATTATGATCGATTTTCACC-AAAA--AAATATATTTT
1 GCTTCATGTTTCCTAATGCAAACATCCAATTATGATTGATTTTAACCAAAAATGAAAAATATTTT
* * *
8576836 GATTTAAAATCATTGATAAGATTATAAAACCATTTAATGCGAGTAACAAGGCTTTCAAAGGCATG
66 GATTTAAAATCATTTATAAGATTATAAAACCATTTAA-ACGAGTAACAAGGCTTTCGAAGGCATG
* *
8576901 AGTGACTATAAATAGACTTTTCTTGTCAAGGGATGGCTT-T
130 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTCT
** * * * *
8576941 CGCTTC-TCGTTTATTGATGCAAGCATCCAATTATGATTGATTTTAATCAAAAA-CAAAAATATT
1 -GCTTCAT-GTTTCCTAATGCAAACATCCAATTATGATTGATTTTAACCAAAAATGAAAAATATT
* ** * * * **
8577004 TTGATTTCAAATCATCGATAAGATTATAAAACAATTTAATGCAAGTAACAAGGCTTTTAAAGGCA
64 TTGATTTAAAATCATTTATAAGATTATAAAACCATTTAA-ACGAGTAACAAGGCTTTCGAAGGCA
* * * * *
8577069 TTAGTGACTATAAATGGGCTTTTTTTGTTAATGGATGGCTTCA
128 TGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTCT
* ** *
8577112 ACTTCATGTTTCCCT-ATTAAAACATCCAATTATGATATG-TTTTAACCAGAAATGAAAAATATT
1 GCTTCATGTTT-CCTAATGCAAACATCCAATTATGAT-TGATTTTAACCAAAAATGAAAAATATT
* * * * * *
8577175 TTGATTTAAAATCATTTATAAGATTATTAAACCACTTAAAGCAACTAACAAGGCTTTTGAAGGTA
64 TTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAA-CGAGTAACAAGGCTTTCGAAGGCA
* *
8577240 TGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGTCTT-T
128 TGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTCT
* * *
8577282 GCTTCATGTTTCCTAATGCAAACATCCAATTATGATCTG-GTTTAACCAAAAATGAAAAACAAAT
1 GCTTCATGTTTCCTAATGCAAACATCCAATTATGAT-TGATTTTAACCAAAAATGAAAAA-TATT
** * * * * * * * * *
8577346 TCAATTTAAAATCATTTATAAGGTTATAATATCACTTTAAGCAAGAAACAAGGCGTTCAAAGGCT
64 TTGATTTAAAATCATTTATAAGATTATAAAACCA-TTTAAACGAGTAACAAGGCTTTCGAAGGCA
* **
8577411 TGAGTGACTATAAATGGACTTTTCTTGTCAATGAATGAAATTC-
128 TGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG-GCTTCT
* * * ** *
8577454 GCTTCATGATTCCCAATGTAAACATCCAATTATGATCAATTTTAA-CAAGAAATGAAAAAGA-TT
1 GCTTCATGTTTCCTAATGCAAACATCCAATTATGATTGATTTTAACCAA-AAATGAAAAATATTT
* * * *
8577517 TGATTTAAAATCATTTATAAGATTATAAAACCATTTGAAACAAGTAATAAGGCTTACGATGGCAT
65 TGATTTAAAATCATTTATAAGATTATAAAACCATTT-AAACGAGTAACAAGGCTTTCGAAGGCAT
* * * *
8577582 TAGTGAGTATAAATGGACTTTTCTTGTTAATAGATG
129 GAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
8577618 ACATCCTGTT
Statistics
Matches: 3400, Mismatches: 706, Indels: 274
0.78 0.16 0.06
Matches are distributed among these distances:
165 2 0.00
166 73 0.02
167 149 0.04
168 176 0.05
169 567 0.17
170 1163 0.34
171 960 0.28
172 300 0.09
173 10 0.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (170 bp):
GCTTCATGTTTCCTAATGCAAACATCCAATTATGATTGATTTTAACCAAAAATGAAAAATATTTT
GATTTAAAATCATTTATAAGATTATAAAACCATTTAAACGAGTAACAAGGCTTTCGAAGGCATGA
GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTCT
Found at i:8574848 original size:341 final size:342
Alignment explanation
Indices: 8573204--8577617 Score: 3812
Period size: 341 Copynumber: 13.0 Consensus size: 342
8573194 AATGGTATTC
* * * * * * * *
8573204 GCTTCAGGGTTCCCAATCCAAACCTCCAATTATGATCGTTTTTAACCTAAAATGAAATATATTTT
1 GCTTCATGTTTCCCAATGCAAACATCCAATTATGATTGATTTTAACCAAAAATGAAAAATATTTT
* * * * *
8573269 GATTTAAAATCATTCATAAGAATATAAAACCATTTAAA-CTGAGTAACAACGCTTTCGAAAGCAT
66 GATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGC-GACTAACAAGGCTTTCGAAGGCAT
* * * ** *
8573333 AAGGGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCAG-TTCATGTTTCTTGATGAAAA
130 GAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATTC-GCTTCATGTTTCTCAATGCAAA
* * * ** * ** *
8573397 CATCCAATTATAATCCATTTTAA-TAAAAAACAAAAA-AATTCAATTTAAAATCATTTATAATAT
194 CATCCAATTATGATCGATTTTAACCAAAAATGAAAAATATTTTGATTTAAAATCATTTATAAGAT
* * * *
8573460 TATAAAACCAATTAAA-ACAAGTAACAAGGCTTAC--ATGGCATGAGTGATTATAAATGGACTTT
259 TATAAAACCATTTAAAGA-GAGTAACAAGGCTTTCGAAT-GCATGAGTGACTATAAATGGACTTT
* * * *
8573522 TCTTCTCAGTGGA-AG-TTAT
322 TCTTGTCAATGGATGGCTTCT
* ** * * *
8573541 CCCTTCATGTTTCCTGATGCAAACATCCAATTATAATTGATTTTAACCAAAAACGAAAAATATGT
1 -GCTTCATGTTTCCCAATGCAAACATCCAATTATGATTGATTTTAACCAAAAATGAAAAATATTT
* * * * * *
8573606 TGATTTAAAATCATTGATAAGATTATTAAACCATTTAATGCAAGTAACAAGGCTTTTGAAGGCAT
65 TGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGACTAACAAGGCTTTCGAAGGCAT
* * * * * * *
8573671 GAGTGATTATAAAATGGACTTTTCTTGTCAAGGGATGGCATCCACTTCAAGTTTCGCGATGCAAA
130 GAGTGACTAT-AAATGGACTTTTCTTGTCAATGGATGGCATTCGCTTCATGTTTCTCAATGCAAA
* * * * * * * *
8573736 CATCCAATTGTGATTGATTTTAACCCAAAATTAAAAATATTTTGATTCAAAATTATTCATAGGAT
194 CATCCAATTATGATCGATTTTAACCAAAAATGAAAAATATTTTGATTTAAAATCATTTATAAGAT
* * * *
8573801 TATAAAACCATTTAATA-CGAGTAATAAGGCTTTCGAAGGCATAAGTGACTATAAATGGACTTTT
259 TATAAAACCATTTAA-AGAGAGTAACAAGGCTTTCGAATGCATGAGTGACTATAAATGGACTTTT
8573865 CTTGTCAATGGATAGG-TTCT
323 CTTGTCAATGGAT-GGCTTCT
** * * *
8573885 GCTTCATGTTTCCTGATGAAAACATCCAATTATGATATG-TTTTAATCAGAAATGAAAAATATTT
1 GCTTCATGTTTCCCAATGCAAACATCCAATTATGAT-TGATTTTAACCAAAAATGAAAAATATTT
* * * * **
8573949 TGATTTAAAATCATTTATAAGATTATTAAACCACTTAAAGCAACTAACAAGACTTTTAAAGGCAT
65 TGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGACTAACAAGGCTTTCGAAGGCAT
* ** *
8574014 GAGTGACTATAAATGGACTTTTCTTGTCAATGGATTGTGTTTGC-TCAATGTTTCTCAATGCAAA
130 GAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATTCGCTTC-ATGTTTCTCAATGCAAA
* * * * * * ** *
8574078 CATCCAATTATGATTGACTTTAGCTAGAAATGAAAAACATTTCAATTTAAAATCATTTATAGGAT
194 CATCCAATTATGATCGATTTTAACCAAAAATGAAAAATATTTTGATTTAAAATCATTTATAAGAT
* ** * *
8574143 TATAAAACAATTTAAAGAGAGTAATGAGGCTTTCG-ATGGCATGAGTGACTACAAATGGACTTTG
259 TATAAAACCATTTAAAGAGAGTAACAAGGCTTTCGAAT-GCATGAGTGACTATAAATGGACTTTT
*
8574207 CTTGTCAATGGATGG-TGTCA
323 CTTGTCAATGGATGGCT-TCT
* ** * ** * * ** *
8574227 ACTTCACATTTCCCAAAGTGAA-ATCCAAGTATGATTGATTTTAACGAAAAACAAAAAAGATTTT
1 GCTTCATGTTTCCCAATGCAAACATCCAATTATGATTGATTTTAACCAAAAATGAAAAATATTTT
* * * *
8574291 GATTGAAAATCATTTATAAGATTATAAAACCAATTAAAGTGAGC-AACAAGACTTTCGAAGGCAT
66 GATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGA-CTAACAAGGCTTTCGAAGGCAT
* * * * * ** * ** * *
8574355 GAATCACTATAATTGGA-ATTTCTTCTCAAAAGATGGCA-TCGCTACACATTT-TTAGATGGAGA
130 GAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATTCGCTTCATGTTTCTCA-ATGCA-A
* * **
8574417 A-ATCCAATGATGATCGATTTTAACCAAAAATGAAAAATATTTTGATTGAAAATCATGGATAAGA
193 ACATCCAATTATGATCGATTTTAACCAAAAATGAAAAATATTTTGATTTAAAATCATTTATAAGA
*
8574481 TTATAAAACCA-TTAAATGCA-AGTAACAAGGCTTTTGAATGCATGAGTGACTATAAATGGACTT
258 TTATAAAACCATTTAAA-G-AGAGTAACAAGGCTTTCGAATGCATGAGTGACTATAAATGGACTT
*
8574544 TTCTTG-CTAATGGGTGGCTTCT
321 TTCTTGTC-AATGGATGGCTTCT
* * * * *
8574566 GTTTCATGTTTCCCTATGCAAACATCCAATTATGATCTG-TTTT-ACCAGAAATGAAAAACAATT
1 GCTTCATGTTTCCCAATGCAAACATCCAATTATGAT-TGATTTTAACCAAAAATGAAAAATATTT
* * * * * * *
8574629 GGATTTAAAATCATTTATAAGATTATTAAACCACTTAAGGTGACTAACAAGGCTTTTGAAGGTAT
65 TGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGACTAACAAGGCTTTCGAAGGCAT
* * * * *
8574694 GAGTGACTATAAATGGACTTTTCTTGTCAATGAATTGCATTCGTTTCATGTCTCTCAATGTAAAC
130 GAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATTCGCTTCATGTTTCTCAATGCAAAC
** * * * *
8574759 ATCCAATTATGATTTATTGTAACTAGAAATGAAAAACATTTTGATTTAAAATCATTTATAAGATT
195 ATCCAATTATGATCGATTTTAACCAAAAATGAAAAATATTTTGATTTAAAATCATTTATAAGATT
* * * * *
8574824 ATAAAACCATTTGAAGAGAGTAACAAAGCTTTCG-ATGGCATGAGTGACTATAAATAGACATTGC
260 ATAAAACCATTTAAAGAGAGTAACAAGGCTTTCGAAT-GCATGAGTGACTATAAATGGACTTTTC
** **
8574888 TTGTCAATGTCTGGGATCT
324 TTGTCAATGGATGGCTTCT
* * * *
8574907 GCTTCTTGTTTCCCAAAATG-AAA-ATCCAGTTATGATTGATTTTAA-CAAAAA-AAAAAAGATT
1 GCTTCATGTTTCCC--AATGCAAACATCCAATTATGATTGATTTTAACCAAAAATGAAAAATATT
* * * * *
8574968 TTGATTGAAAATCATTTATAAGATTATAAAATCATTTAAAGCGAGC-AATAAGACTTTCGATGGC
64 TTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGA-CTAACAAGGCTTTCGAAGGC
* ** * * * * ** * *
8575032 ATAAACGACTAT-AATTGTCAATTTCTTTTCAATAAATGGCATGCGCTTCACGTTT-TCCAATGC
128 ATGAGTGACTATAAATGGAC-TTTTCTTGTCAATGGATGGCATTCGCTTCATGTTTCT-CAATGC
* * * * * * *
8575095 AAAAATCC-A--ATGATCAATTTGAACAAAAAATGAAGAATATTTTGATTTAAAATCATTGATTA
191 AAACATCCAATTATGATCGATTTTAACCAAAAATGAAAAATATTTTGATTTAAAATCATTTATAA
* * * * *
8575157 GATTATAAAACCATTTAATGCGAGTAACAAGG-TTTCAAAGGCTTGAGTGACTATAAATGGACTT
256 GATTATAAAACCATTTAAAGAGAGTAACAAGGCTTTCGAATGCATGAGTGACTATAAATGGACTT
8575221 TTCTTGTCAATGGATGGCTATC-
321 TTCTTGTCAATGGATGGCT-TCT
* * * * *
8575243 GCTTCATGTTTCCCAATGCAACCATCCAATTATAATCTG-TTTTAACTAAAAATG-AAAACATTC
1 GCTTCATGTTTCCCAATGCAAACATCCAATTATGAT-TGATTTTAACCAAAAATGAAAAATATTT
* * * * *
8575306 CGATTTAAAATCATTTATAAGATTATTAAACCACTTAAAGAGACTAACAAGGCTTTCAAAGGCAT
65 TGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGACTAACAAGGCTTTCGAAGGCAT
* * * * ** * *
8575371 AAGTGACTATAAATGGACTTTTCTTATTAATAGATTCCATTCGCTTCTTGTTTC-CTAATGTAAA
130 GAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATTCGCTTCATGTTTCTC-AATGCAAA
** * * * *
8575435 CATTGAATTATGAAT-GATTTTAACCAAAACTGAAAAAGAATTTGGTTTAAAATCATTTATAAGA
194 CATCCAATTATG-ATCGATTTTAACCAAAAATGAAAAATATTTTGATTTAAAATCATTTATAAGA
* * * * * *
8575499 TTAT-CAATCATTTAAAGAAAGCAACAAGGCTTTCG-ATGGTATGAGTGACTATAAATGGACTGT
258 TTATAAAACCATTTAAAGAGAGTAACAAGGCTTTCGAAT-GCATGAGTGACTATAAATGGACTTT
* * *
8575562 TCTTCTCAATAGATGGCTTCC
322 TCTTGTCAATGGATGGCTTCT
* * * * *
8575583 ACTTCATGTTTCCCGAA-GCAAAAATCCAATTGTGATT-ATTTTAACCAAAAACGAAAAAGATTT
1 GCTTCATGTTTCCC-AATGCAAACATCCAATTATGATTGATTTTAACCAAAAATGAAAAATATTT
* * * ** * *
8575646 TGATTGAACATCATTTATAAGATTATAAAACCATTTAAAGCAAGC-AACAAGAATTTTGATGGCA
65 TGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGA-CTAACAAGGCTTTCGAAGGCA
* * * * * * *
8575710 TGAGTGACTATAATTGGAATTTT-ATGCTCAATGGATAGCGTGT-GCTTCATGTTTTTTAATGCA
129 TGAGTGACTATAAATGGACTTTTCTTG-TCAATGGATGGCAT-TCGCTTCATGTTTCTCAATGCA
* * * * ** ** * * *
8575773 AAAATCCAATGATGATTGATTTTAAGCATGAACAAAAAATATTTGGATTTAAAAACATTGATAAG
192 AACATCCAATTATGATCGATTTTAACCAAAAATGAAAAATATTTTGATTTAAAATCATTTATAAG
* * * * * * * * *
8575838 ATTATAAAAGCATTCAAAGCGACTAACAAAGATTTC-AATTTCATGAATCACTATAAAATGGACT
257 ATTATAAAACCATTTAAAGAGAGTAACAAGGCTTTCGAA-TGCATGAGTGACTAT-AAATGGACT
* * *
8575902 TTTCTTCTCAATAGATGGCATCT
320 TTTCTTGTCAATGGATGGCTTCT
* * * ** *
8575925 GCTTCACT-TTCCCCAATGCAAACATCCTATTATGAATGATTTTAATGAAAAATTAAAAATATTT
1 GCTTCA-TGTTTCCCAATGCAAACATCCAATTATGATTGATTTTAACCAAAAATGAAAAATATTT
* ** * * * * *
8575989 TGATTTAAAATTATTTATAAGATTATAAAAATACTTAAA-TGAGTAACAAAGCTTTCAAAGGCAT
65 TGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGACTAACAAGGCTTTCGAAGGCAT
* * * * ** *
8576053 GAGTGACTATAAGTGGACTTTTCTTATCAATGGATGTC-TTTGCTTCACATTTCTCAATACAAAC
130 GAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATTCGCTTCATGTTTCTCAATGCAAAC
* ** * ** * *
8576117 ATCCAATTATGATCTATTTTAATAAAAAATGAAAAAAATTTAAATTGAAAATCATTTATAACATT
195 ATCCAATTATGATCGATTTTAACCAAAAATGAAAAATATTTTGATTTAAAATCATTTATAAGATT
* * * * * * *
8576182 ATAAAACCACTTAGAGCGAGCAACAAGG-TGTTTGAAGGCATGAGT-ACTATAAATGCACTTTTC
260 ATAAAACCATTTAAAGAGAGTAACAAGGCT-TTCGAATGCATGAGTGACTATAAATGGACTTTTC
* * * *
8576245 TTCTTAGTGAATGGCATTC-
324 TTGTCAATGGATGGC-TTCT
* * * *
8576264 ACTTCATGATTCCCAATGAAAACATCCAATTCTGATTGATTTTAA-CAAGAAATGAAAAATATTT
1 GCTTCATGTTTCCCAATGCAAACATCCAATTATGATTGATTTTAACCAA-AAATGAAAAATATTT
* * ** *
8576328 TGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCCAATAACAAGGCTCACGATGGCAT
65 TGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGACTAACAAGGCTTTCGAAGGCAT
* * * * * * ** *
8576393 AAGTGACTATAAATAGACTTTTTTTATCAATGGATGGTA-TCTACTTCACATTTCTCAGTGCAAA
130 GAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATTC-GCTTCATGTTTCTCAATGCAAA
* * * ** * * * *
8576457 CATCAAATTATGA-GGAATTTTAGCCAAAAACAAAAAAGATTTCGATTTAAAATCA-ATACAAGA
194 CATCCAATTATGATCG-ATTTTAACCAAAAATGAAAAATATTTTGATTTAAAATCATTTATAAGA
* ** * *
8576520 TTATAAAACCATTTAAAGAGAGTAACAAGGCTGTCG-ATGTCATGAGTGACTCGAAGTGGACGTT
258 TTATAAAACCATTTAAAGAGAGTAACAAGGCTTTCGAATG-CATGAGTGACTATAAATGGACTTT
* *
8576584 TCTTGTTAATGGATGGCTTTT
322 TCTTGTCAATGGATGGCTTCT
*** * ** *
8576605 GCTTCATGTTTCTTTATGCAAACATCTAATTATGATCAATTTTAACTAAAAA-GAAAAAATATTT
1 GCTTCATGTTTCCCAATGCAAACATCCAATTATGATTGATTTTAACCAAAAATG-AAAAATATTT
* * *
8576669 TGATTTAAAATCATTTAT-AGTATTATAAAATCATTTAAAGCAAGTAACAAGGC-TTC-AATGGC
65 TGATTTAAAATCATTTATAAG-ATTATAAAACCATTTAAAGCGACTAACAAGGCTTTCGAA-GGC
* * * * * * *
8576731 ATGAGTGATTATAAATAGACTTTTCTTTTCAATGTAAGGCATTC-CTCCATGTTTC-CTAATGTA
128 ATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATTCGCTTCATGTTTCTC-AATGCA
* * *
8576794 AACATCCAATTATGATCGATTTTCACC-AAAA--AAATATATTTTGATTTAAAATCATTGATAAG
192 AACATCCAATTATGATCGATTTTAACCAAAAATGAAAAATATTTTGATTTAAAATCATTTATAAG
* * * * *
8576856 ATTATAAAACCATTTAATGCGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATAGACTTT
257 ATTATAAAACCATTTAAAGAGAGTAACAAGGCTTTCGAATGCATGAGTGACTATAAATGGACTTT
*
8576921 TCTTGTCAAGGGATGGCTT-T
322 TCTTGTCAATGGATGGCTTCT
**** * * *
8576941 CGCTTC-TCGTTTATTGATGCAAGCATCCAATTATGATTGATTTTAATCAAAAA-CAAAAATATT
1 -GCTTCAT-GTTTCCCAATGCAAACATCCAATTATGATTGATTTTAACCAAAAATGAAAAATATT
* ** * * * * **
8577004 TTGATTTCAAATCATCGATAAGATTATAAAACAATTTAATGCAAGTAACAAGGCTTTTAAAGGCA
64 TTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGACTAACAAGGCTTTCGAAGGCA
* * * * * * * **
8577069 TTAGTGACTATAAATGGGCTTTTTTTGTTAATGGATGGC-TTCAACTTCATGTTTCCCTATTAAA
129 TGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATTC-GCTTCATGTTTCTCAATGCAA
* *
8577133 ACATCCAATTATGATATG-TTTTAACCAGAAATGAAAAATATTTTGATTTAAAATCATTTATAAG
193 ACATCCAATTATGAT-CGATTTTAACCAAAAATGAAAAATATTTTGATTTAAAATCATTTATAAG
* * * * * * *
8577197 ATTATTAAACCACTTAAAGCA-ACTAACAAGGCTTTTGAAGGTATGAGTGACTATAAATAGACTT
257 ATTATAAAACCATTTAAAG-AGAGTAACAAGGCTTTCGAATGCATGAGTGACTATAAATGGACTT
*
8577261 TTCTTGTCAATGGATGTCTT-T
321 TTCTTGTCAATGGATGGCTTCT
* * * *
8577282 GCTTCATGTTTCCTAATGCAAACATCCAATTATGATCTG-GTTTAACCAAAAATGAAAAACAAAT
1 GCTTCATGTTTCCCAATGCAAACATCCAATTATGAT-TGATTTTAACCAAAAATGAAAAA-TATT
** * * * * ** * *
8577346 TCAATTTAAAATCATTTATAAGGTTATAATATCACTTT-AAGCAAGAAACAAGGCGTTCAAAGGC
64 TTGATTTAAAATCATTTATAAGATTATAAAACCA-TTTAAAGCGACTAACAAGGCTTTCGAAGGC
* * ** * * *
8577410 TTGAGTGACTATAAATGGACTTTTCTTGTCAATGAATGAAATTCGCTTCATGATTCCCAATGTAA
128 ATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATTCGCTTCATGTTTCTCAATGCAA
* *
8577475 ACATCCAATTATGATCAATTTTAA-CAAGAAATGAAAAAGA-TTTGATTTAAAATCATTTATAAG
193 ACATCCAATTATGATCGATTTTAACCAA-AAATGAAAAATATTTTGATTTAAAATCATTTATAAG
* * * * *
8577538 ATTATAAAACCATTTGAAACA-AGTAATAAGGCTTACG-ATGGCATTAGTGAGTATAAATGGACT
257 ATTATAAAACCATTT-AAAGAGAGTAACAAGGCTTTCGAAT-GCATGAGTGACTATAAATGGACT
* *
8577601 TTTCTTGTTAATAGATG
320 TTTCTTGTCAATGGATG
8577618 ACATCCTGTT
Statistics
Matches: 3263, Mismatches: 689, Indels: 245
0.78 0.16 0.06
Matches are distributed among these distances:
334 4 0.00
335 2 0.00
336 150 0.05
337 337 0.10
338 175 0.05
339 480 0.15
340 628 0.19
341 834 0.26
342 459 0.14
343 188 0.06
344 6 0.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (342 bp):
GCTTCATGTTTCCCAATGCAAACATCCAATTATGATTGATTTTAACCAAAAATGAAAAATATTTT
GATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGACTAACAAGGCTTTCGAAGGCATG
AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATTCGCTTCATGTTTCTCAATGCAAACA
TCCAATTATGATCGATTTTAACCAAAAATGAAAAATATTTTGATTTAAAATCATTTATAAGATTA
TAAAACCATTTAAAGAGAGTAACAAGGCTTTCGAATGCATGAGTGACTATAAATGGACTTTTCTT
GTCAATGGATGGCTTCT
Found at i:8578919 original size:43 final size:43
Alignment explanation
Indices: 8578857--8578981 Score: 139
Period size: 43 Copynumber: 2.9 Consensus size: 43
8578847 CATTGACTCT
* *
8578857 GTTATGTGCAAGTAAGGAGTGCGCATAAGC-CGAG-GATGACCCG
1 GTTATGTGCAAGTAGGGAGTGCGCATAA-CTCG-GTGATGACCCA
* *
8578900 GTTATGTGCGAGTAGGGAGTGCGCATAACTCGGTGATGACCTA
1 GTTATGTGCAAGTAGGGAGTGCGCATAACTCGGTGATGACCCA
** *
8578943 GCCATGTGCAAGTAGGGAGTGCGCATGAGCT-GGTGATGA
1 GTTATGTGCAAGTAGGGAGTGCGCAT-AACTCGGTGATGA
8578982 TGATGATGGG
Statistics
Matches: 71, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
42 2 0.03
43 66 0.93
44 3 0.04
ACGTcount: A:0.25, C:0.17, G:0.37, T:0.22
Consensus pattern (43 bp):
GTTATGTGCAAGTAGGGAGTGCGCATAACTCGGTGATGACCCA
Found at i:8579446 original size:39 final size:40
Alignment explanation
Indices: 8579356--8579448 Score: 134
Period size: 39 Copynumber: 2.4 Consensus size: 40
8579346 AAATTCATTC
* *
8579356 TCGCTACAGCGAGAAACTTTCTGTTTTTTGGGTTGCAATT
1 TCGCTACAGCGAGAAACTTTCTGTTTTCTGGGTTACAATT
*
8579396 TCGCTGCAGCGAGAAACTTTCTG-TTTCTGGGTTACAATT
1 TCGCTACAGCGAGAAACTTTCTGTTTTCTGGGTTACAATT
* *
8579435 TTGCTATAGCGAGA
1 TCGCTACAGCGAGA
8579449 TTCAATCTCA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
39 25 0.53
40 22 0.47
ACGTcount: A:0.22, C:0.18, G:0.24, T:0.37
Consensus pattern (40 bp):
TCGCTACAGCGAGAAACTTTCTGTTTTCTGGGTTACAATT
Found at i:8579679 original size:22 final size:22
Alignment explanation
Indices: 8579654--8579700 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
8579644 AATCCCAACG
*
8579654 TCGCTGCAACGAAAATTCATTA
1 TCGCTACAACGAAAATTCATTA
*
8579676 TCGCTACAACGAAGATTCATTA
1 TCGCTACAACGAAAATTCATTA
8579698 TCG
1 TCG
8579701 TATTTGACTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (22 bp):
TCGCTACAACGAAAATTCATTA
Found at i:8581901 original size:43 final size:43
Alignment explanation
Indices: 8581783--8581907 Score: 160
Period size: 43 Copynumber: 2.9 Consensus size: 43
8581773 TATTGTGTGA
* * * *
8581783 TAATTATGACCCAGCTATGTGCAATGTAAGAGTGTACATGAGC
1 TAATGATGACCCAGCTATGTGCGATGTAGGATTGTACATGAGC
* **
8581826 TAATGATGACCCAACTATGTGCGGCGTAGGATTGTACATGAGC
1 TAATGATGACCCAGCTATGTGCGATGTAGGATTGTACATGAGC
* * *
8581869 TAATGATGACCCAGCTATGTACGTTGTGGGATTGTACAT
1 TAATGATGACCCAGCTATGTGCGATGTAGGATTGTACAT
8581908 AAGTTGAGGG
Statistics
Matches: 70, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 70 1.00
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.29
Consensus pattern (43 bp):
TAATGATGACCCAGCTATGTGCGATGTAGGATTGTACATGAGC
Found at i:8583454 original size:171 final size:169
Alignment explanation
Indices: 8582813--8584302 Score: 775
Period size: 171 Copynumber: 8.7 Consensus size: 169
8582803 AAAGAAAAAA
* * * * * *
8582813 ATCCAATAATGATTGATTTTCACAAAAAATGAAAAAGATTTTG-ATTGAAAATGATTTATGAGAT
1 ATCCAATTATGATTGTTTTTAAC-AAAAATAAAAAAGATTTTGAATT-AAAATCATTTATAAGAT
* * * * * *
8582877 TATAAAACCATTTAAAGCGAGTAACAA-GACTTTCAATGGCATGTGTGACTATAAATGGAATTTT
64 TAT-AAACTATTTAAAGTGAGTAACAAGGCCTTT-AAAGGCATGAGTGACTATAAATGGACTTTT
* * * * * * * * * * ** *
8582941 CATCTCAATG-GATGCATACGCTTCTTGTTTTTCGATGTAAAA
127 CTTGTCAATGAAAGGCATTCACTTCATGATTCTCAATACAAAC
* * * * * * * * * * * * *
8582983 ATCCAATGATGATCGATTTTGACCAAATACAAAAAATATTTTCATTTGAAATTATTCATAATATT
1 ATCCAATTATGATTG-TTTTTAACAAAAATAAAAAAGATTTTGAATTAAAATCATTTATAAGATT
* * ** * *
8583048 ATAAAACTATTCAAAGTGAGTAACAAGG-GTTTCGCATGCATGAGTGACTATAAGTGTG-CTTTT
65 AT-AAACTATTTAAAGTGAGTAACAAGGCCTTT-AAAGGCATGAGTGACTATAAATG-GACTTTT
* * * * * * * ** *
8583111 CTTATCAATGGATGGC-TTTAGCTTTACGTTTCTTGATGCAAAC
127 CTTGTCAATGAAAGGCATTCA-CTTCATGATTCTCAATACAAAC
* * * *
8583154 ATCAAATTATGATCTG-TTTTAACTAGAAATGAAAAAA-ATTTTGATTTAAAATAATTTA-AAGA
1 ATCCAATTATGAT-TGTTTTTAAC-AAAAAT-AAAAAAGATTTTGAATTAAAATCATTTATAAGA
* * * * *
8583216 TTATTTAACCA-CTAAGAGTGAGTAACAAGGCGTTTAAAGGCATGAGTGACTATAGATGGACTTT
63 TTA-TAAACTATTTAA-AGTGAGTAACAAGGCCTTTAAAGGCATGAGTGACTATAAATGGACTTT
* * *
8583280 TCTTGTCAATGAAAGGCATTCATTTCATGATTCAT-AATGCAAGC
126 TCTTGTCAATGAAAGGCATTCACTTCATGATTC-TCAATACAAAC
* * *
8583324 ATCCAATTATGGTTGTTTTTAACAAAAAATGAAAAAGATTTTGAATTAAAATCATTTGTAAGATT
1 ATCCAATTATGATTGTTTTTAAC-AAAAATAAAAAAGATTTTGAATTAAAATCATTTATAAGATT
** * * *
8583389 GA-AATACTATTTAAAGCCAATAACAAGGCCTTTGATGGCATGAGTGACTATAAATGGACTTTTC
65 -ATAA-ACTATTTAAAGTGAGTAACAAGGCCTTTAAAGGCATGAGTGACTATAAATGGACTTTTC
* * * * *
8583453 TTGTCAATGGATGGCA-TCTATTTCATGTTTCTCAATATAAAC
128 TTGTCAATGAAAGGCATTC-ACTTCATGATTCTCAATACAAAC
* ** * * * *
8583495 ATCCAATTATG-TGGAATTTTTGTC---AA-AAAAAAGATTTTTATTTAAAATCAATTATATGAT
1 ATCCAATTATGATTG--TTTTTAACAAAAATAAAAAAGATTTTGAATTAAAATCATTTATAAGAT
* * * * * * *
8583555 TATAAAACCATTTAAAGTGAGTAAGAAGGCTTTTGATGGTATAAGTGACTATAAATGGACTTTTC
64 TAT-AAACTATTTAAAGTGAGTAACAAGGCCTTTAAAGGCATGAGTGACTATAAATGGACTTTTC
* * * * *
8583620 TTCTCAATGGAAGGCATTCGCTTCATGTTTC-CTGATACAAAC
128 TTGTCAATGAAAGGCATTCACTTCATGATTCTC-AATACAAAC
* *** * * * *
8583662 TTCCAATTATGATCAATTTTAACGAAAAACAAAAAATATTTTG-ATTCAAAATCTTTTATAAAAT
1 ATCCAATTATGATTGTTTTTAAC-AAAAATAAAAAAGATTTTGAATT-AAAATCATTTATAAGAT
* * * **
8583726 TATAAAATCATTTAAAGTGAGTAA-TAGGGCTTTCAAAGAAATGAGTGACTATAAATGGACTTTT
64 TATAAACT-ATTTAAAGTGAGTAACAAGGCCTTT-AAAGGCATGAGTGACTATAAATGGACTTTT
* * ** * *
8583790 CTTGTCAATGAATGGCTTTTGCTTCAT-ATTTTTCAATGA-AAAT
127 CTTGTCAATGAAAGGCATTCACTTCATGA-TTCTCAAT-ACAAAC
* * *
8583833 GTCCAATTATGATATG-TTTTAACCAAGAATAAAAAAAATTTTGAATTAAAATCATTTATAAGAT
1 ATCCAATTATGAT-TGTTTTTAA-CAAAAATAAAAAAGATTTTGAATTAAAATCATTTATAAGAT
* * * * ** *
8583897 TATTAAACCACTT-AAGTAGAGTAACAA-GAC-TTACGCAGATATGAGTGACTATAAATAGACTT
64 TA-TAAACTATTTAAAGT-GAGTAACAAGGCCTTTA--AAGGCATGAGTGACTATAAATGGACTT
* * * *** * * * *
8583959 TTCTTGTCTACGGATTTCATTCACTTCATGTTTCCCAATGCAAAG
125 TTCTTGTCAATGAAAGGCATTCACTTCATGATTCTCAATACAAAC
* * ** * * *
8584004 ATCCAATTATGATCGATTTTAGGTAGAAATAGAAAAGA-TTTCAACTTAAAATCATTTATAAGAT
1 ATCCAATTATGATTGTTTTTA-ACAAAAATAAAAAAGATTTTGAA-TTAAAATCATTTATAAGAT
* * * * * * *
8584068 TACAAAACCATTTAAAGTGAGTAACAAGG-CTTTCGAATGCATGAGAGACTATAAATAGAATTTT
64 TA-TAAACTATTTAAAGTGAGTAACAAGGCCTTT-AAAGGCATGAGTGACTATAAATGGACTTTT
* * * * ***
8584132 CATGTCAATGGATGGCTTTTGGTTCATG-TT-TCATGATGA-AAAC
127 CTTGTCAATGAAAGGCATTCACTTCATGATTCTCA--AT-ACAAAC
* * * * * * *
8584175 ATCCAATTATTATCT-ATTTTAACCAAAAATGAAAAAA-CTTTCGATTTAAAATTATTTATGAGA
1 ATCCAATTATGAT-TGTTTTTAA-CAAAAAT-AAAAAAGATTTTGAATTAAAATCATTTATAAGA
* * * *
8584238 TTACTAAACCACTTAAAGTGAGTAATAAGG-CTTTCAAAGGCATGAGTTA-TGATAAATGGACTT
63 TTA-TAAACTATTTAAAGTGAGTAACAAGGCCTTT-AAAGGCATGAGTGACT-ATAAATGGACTT
8584301 TT
125 TT
8584303 GTCAAGCCCA
Statistics
Matches: 1019, Mismatches: 235, Indels: 131
0.74 0.17 0.09
Matches are distributed among these distances:
166 7 0.01
167 121 0.12
168 7 0.01
169 13 0.01
170 251 0.25
171 577 0.57
172 43 0.04
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (169 bp):
ATCCAATTATGATTGTTTTTAACAAAAATAAAAAAGATTTTGAATTAAAATCATTTATAAGATTA
TAAACTATTTAAAGTGAGTAACAAGGCCTTTAAAGGCATGAGTGACTATAAATGGACTTTTCTTG
TCAATGAAAGGCATTCACTTCATGATTCTCAATACAAAC
Found at i:8584160 original size:680 final size:677
Alignment explanation
Indices: 8582844--8584184 Score: 1487
Period size: 680 Copynumber: 2.0 Consensus size: 677
8582834 ACAAAAAATG
* *
8582844 AAAAAGATTTTGATTGAAAATGATTTATGAGATTATAAAACCATTTAAAGCGAGTAACAAGACTT
1 AAAAAGATTTTGATTGAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAACAAGACTT
** * * *
8582909 TCAATGGCATGTGTGACTATAAATGGAATTTTCATCTCAATGGATGCATACGCTTCTTGTTTTTC
66 TCAATGGCATAAGTGACTATAAATGGAATTTTCATCTCAATGGAGGCATACGCTTCATGTTTCTC
** * * * **
8582974 GATGTAAAAATCCAATGATGATCGATTTTGACCAAATACAAAAAATATTTTCATTTGAAATTATT
131 GATACAAAAATCCAATGATGATCAATTTTAACCAAAAACAAAAAATATTTTCATTCAAAATTATT
* * * * *
8583039 CATAATATTATAAAACTATTCAAAGTGAGTAACAAGGGTTTCGCATGCATGAGTGACTATAAGTG
196 CATAAAATTATAAAACTATTCAAAGTGAGTAACAAGGGTTTCGAAAGAATGAGTGACTATAAATG
* * * * * *
8583104 TGCTTTTCTTATCAATGGATGGCTTTAGCTTTACGTTTCTTGATGCAAACATCAAATTATGATCT
261 TGCTTTTCTTATCAATGAATGGCTTTAGCTTCACATTTCTTAATGAAAACATCAAATTATGATAT
* * * *
8583169 GTTTTAACTAGAAATGAAAAAAATTTTGATTTAAAATAATTTAAAGATTATTTAACCACTAAGAG
326 GTTTTAACAAGAAATAAAAAAAATTTTGAATTAAAATAATTTAAAGATTATTAAACCACTAAGAG
* * * * *
8583234 TGAGTAACAAGGCGTTTAAAGGCATGAGTGACTATAGATGGACTTTTCTTGTCAATGAAAGGCAT
391 TGAGTAACAAGACG-TTAAAGACATGAGTGACTATAAATAGACTTTTCTTGTCAACGAAAGGCAT
* * * * *
8583299 TCATTTCATGATTCATAATGCAAGCATCCAATTATGGTTGTTTTTAACAAAAAATGAAAAAGATT
455 TCACTTCATGATTCACAATGCAAGCATCCAATTATGATCGATTTTAACAAAAAATGAAAAAGATT
* * * *
8583364 TTGAATTAAAATCATTTGTAAGATTGAAATACTATTTAAAGCCAATAACAAGGCCTTTGATGGCA
520 TTCAATTAAAATCATTTATAAGATTGAAAAACCATTTAAAGCCAATAACAAGGCCTTTGATGGCA
* * * * *
8583429 TGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTATTTCATGTTTC-TCAAT-ATA
585 TGAGAGACTATAAATAGAATTTTCATGTCAATGGATGGCATCTAGTTCATGTTTCAT-AATGA-A
8583492 AACATCCAATTATGTGGAATTTTTGTCAAA
648 AACATCCAATTATGTGGAATTTTTGTCAAA
* * * * *
8583522 AAAAAGATTTTTATTTAAAATCAATTAT-ATGATTATAAAACCATTTAAAGTGAGTAAGAAGGCT
1 AAAAAGATTTTGATTGAAAATCAATTATGA-GATTATAAAACCATTTAAAGCGAGTAACAAGACT
** * * * *
8583586 TTTGATGGTATAAGTGACTATAAATGGACTTTTCTTCTCAATGGAAGGCATTCGCTTCATGTTTC
65 TTCAATGGCATAAGTGACTATAAATGGAATTTTCATCTCAATGG-AGGCATACGCTTCATGTTTC
** * * *
8583651 -CTGATACAAACTTCCAATTATGATCAATTTTAACGAAAAACAAAAAATATTTTGATTCAAAATC
129 TC-GATACAAAAATCCAATGATGATCAATTTTAACCAAAAACAAAAAATATTTTCATTCAAAAT-
* * *
8583715 T-TTTATAAAATTATAAAA-TCATTTAAAGTGAGTAA-TAGGGCTTTC-AAAGAAATGAGTGACT
192 TATTCATAAAATTATAAAACT-ATTCAAAGTGAGTAACAAGGG-TTTCGAAAG-AATGAGTGACT
* * * ** *
8583776 ATAAATG-GACTTTTCTTGTCAATGAATGGCTTTTGCTTCATATTT-TTCAATGAAAATGTCCAA
254 ATAAATGTG-CTTTTCTTATCAATGAATGGCTTTAGCTTCACATTTCTT-AATGAAAACATCAAA
*
8583839 TTATGATATGTTTTAACCAAG-AATAAAAAAAATTTTGAATTAAAATCATTTATAAGATTATTAA
317 TTATGATATGTTTTAA-CAAGAAATAAAAAAAATTTTGAATTAAAATAATTTA-AAGATTATTAA
* * *
8583903 ACCACTTA-AGTAGAGTAACAAGAC-TTACGCAGATATGAGTGACTATAAATAGACTTTTCTTGT
380 ACCACTAAGAGT-GAGTAACAAGACGTTA--AAGACATGAGTGACTATAAATAGACTTTTCTTGT
* * *** * * *** *
8583966 CTACGGATTTCATTCACTTCATGTTTCCCAATGCAAAG-ATCCAATTATGATCGATTTTAGGTAG
442 CAACGAAAGGCATTCACTTCATGATTCACAATGC-AAGCATCCAATTATGATCGATTTTAACAAA
** *
8584030 AAAT-AGAAAAGA-TTTCAACTTAAAATCATTTATAAGATT-ACAAAACCATTTAAAGTGAGTAA
506 AAATGA-AAAAGATTTTCAA-TTAAAATCATTTATAAGATTGA-AAAACCATTTAAAGCCAATAA
* * *
8584092 CAAGG-CTTTCGAAT-GCATGAGAGACTATAAATAGAATTTTCATGTCAATGGATGGCTTTTGGT
568 CAAGGCCTTT-G-ATGGCATGAGAGACTATAAATAGAATTTTCATGTCAATGGATGGCATCTAGT
*
8584155 TCATGTTTCATGATGAAAACATCCAATTAT
631 TCATGTTTCATAATGAAAACATCCAATTAT
8584185 TATCTATTTT
Statistics
Matches: 546, Mismatches: 95, Indels: 42
0.80 0.14 0.06
Matches are distributed among these distances:
677 1 0.00
678 106 0.19
679 211 0.39
680 221 0.40
681 7 0.01
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.35
Consensus pattern (677 bp):
AAAAAGATTTTGATTGAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAACAAGACTT
TCAATGGCATAAGTGACTATAAATGGAATTTTCATCTCAATGGAGGCATACGCTTCATGTTTCTC
GATACAAAAATCCAATGATGATCAATTTTAACCAAAAACAAAAAATATTTTCATTCAAAATTATT
CATAAAATTATAAAACTATTCAAAGTGAGTAACAAGGGTTTCGAAAGAATGAGTGACTATAAATG
TGCTTTTCTTATCAATGAATGGCTTTAGCTTCACATTTCTTAATGAAAACATCAAATTATGATAT
GTTTTAACAAGAAATAAAAAAAATTTTGAATTAAAATAATTTAAAGATTATTAAACCACTAAGAG
TGAGTAACAAGACGTTAAAGACATGAGTGACTATAAATAGACTTTTCTTGTCAACGAAAGGCATT
CACTTCATGATTCACAATGCAAGCATCCAATTATGATCGATTTTAACAAAAAATGAAAAAGATTT
TCAATTAAAATCATTTATAAGATTGAAAAACCATTTAAAGCCAATAACAAGGCCTTTGATGGCAT
GAGAGACTATAAATAGAATTTTCATGTCAATGGATGGCATCTAGTTCATGTTTCATAATGAAAAC
ATCCAATTATGTGGAATTTTTGTCAAA
Found at i:8584302 original size:342 final size:340
Alignment explanation
Indices: 8582808--8584302 Score: 1247
Period size: 342 Copynumber: 4.4 Consensus size: 340
8582798 TTCCCAAAGA
* * * * * * *
8582808 AAAAAATCCAATAATGAT-TGATTTTCACAAAAAATGAAAAAGATTTTGATTGAAAATGATTTAT
1 AAAACATCCAATTATGATCT-ATTTTAACCAAAAATGAAAAAAATTTTGATTTAAAATCATTTAT
* * * * * * * *
8582872 GAGATTATAAAACCATTTAAAGCGAGTAACAAGACTTTCAATGGCATGTGTGACTATAAATGGAA
65 AAGATTATTAAACCACTTAAAGTGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATGGAC
* * * * * * * * * * *
8582937 TTTTCATCTCAATGG-ATGCATACGCTTCTTGTTT-TTCGATGTAAAAATCCAATGATGATCGAT
130 TTTTCTTGTCAATGGAAGGCATTCACTTCATGTTTCCT-AATGCAAAGATCCAATTATGATCGAT
** * * * * * * * * * * *
8583000 TTTGACCAAATACAAAAAATATTTTCATTTGAAATTATTCATAATATTATAAAACTATTCAAAGT
194 TTT-AAGAAAAATAGAAAAGA-TTTCAATTAAAATCATTTATAAGATTATAAAACCATTTAAAGT
* * * *
8583065 GAGTAACAAGGGTTTCGCATGCATGAGTGACTATAAGTGTG-CTTTTCTTATCAATGGATGGCTT
257 GAGTAACAAGGCTTTCGAATGCATGAGTGACTATAAATG-GACTTTTCTTGTCAATGGATGGCTT
* * * *
8583129 TAGCTTTACGTTTCTTGATG
321 TTGCTTCATGTTTCATGATG
* * * * * *
8583149 CAAACATCAAATTATGATCTGTTTTAACTAGAAATGAAAAAAATTTTGATTTAAAATAATTTA-A
1 AAAACATCCAATTATGATCTATTTTAACCAAAAATGAAAAAAATTTTGATTTAAAATCATTTATA
* *
8583213 AGATTATTTAACCAC-TAAGAGTGAGTAACAAGGCGTTT-AAAGGCATGAGTGACTATAGATGGA
66 AGATTATTAAACCACTTAA-AGTGAGTAACAAGGC-TTTCAAAGGCATGAGTGACTATAAATGGA
* * * * * * *
8583276 CTTTTCTTGTCAATGAAAGGCATTCATTTCATGATTCATAATGC-AAGCATCCAATTATGGTTGT
129 CTTTTCTTGTCAATGGAAGGCATTCACTTCATGTTTCCTAATGCAAAG-ATCCAATTATGATCGA
* * * * *
8583340 TTTTAACAAAAA-ATGAAAAAGATTTTGAATTAAAATCATTTGTAAGATTGA-AATACTATTTAA
193 TTTTAAGAAAAATA-G-AAAAGA-TTTCAATTAAAATCATTTATAAGATT-ATAAAACCATTTAA
** *
8583403 AGCCAATAACAAGGCCTTT-G-ATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
254 AGTGAGTAACAAGG-CTTTCGAAT-GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* * ** *
8583466 GCATCTATTTCATGTTTC-TCAAT-
317 GCTTTTGCTTCATGTTTCAT-GATG
** *** * * *
8583489 ATAAACATCCAATTATG-TGGAATTTTTGTC--AAA--AAAAAGATTTTTATTTAAAATCAATTA
1 A-AAACATCCAATTATGAT-CTATTTTAACCAAAAATGAAAAAAATTTTGATTTAAAATCATTTA
* * * * ** * * *
8583549 TATGATTATAAAACCATTTAAAGTGAGTAAGAAGGCTTTTGATGGTATAAGTGACTATAAATGGA
64 TAAGATTATTAAACCACTTAAAGTGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATGGA
* * * * ** *
8583614 CTTTTCTTCTCAATGGAAGGCATTCGCTTCATGTTTCCTGATACAAACTTCCAATTATGATCAAT
129 CTTTTCTTGTCAATGGAAGGCATTCACTTCATGTTTCCTAATGCAAAGATCCAATTATGATCGAT
* * * ** * * *
8583679 TTTAACGAAAAACAAAAAATATTTTGATTCAAAATCTTTTATAAAATTATAAAATCATTTAAAGT
194 TTTAA-GAAAAATAGAAAAGATTTCAATT-AAAATCATTTATAAGATTATAAAACCATTTAAAGT
* * * * *
8583744 GAGTAATAGGGCTTTC-AAAGAAATGAGTGACTATAAATGGACTTTTCTTGTCAATGAATGGCTT
257 GAGTAACAAGGCTTTCGAATG-CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTT
*
8583808 TTGCTTCATATTTTTCA--ATG
321 TTGCTTC--ATGTTTCATGATG
** * * * * *
8583828 AAAATGTCCAATTATGATATGTTTTAACCAAGAATAAAAAAAATTTTGAATTAAAATCATTTATA
1 AAAACATCCAATTATGATCTATTTTAACCAAAAATGAAAAAAATTTTGATTTAAAATCATTTATA
* * ** ** *
8583893 AGATTATTAAACCACTT-AAGTAGAGTAACAAGACTTACGCAGATATGAGTGACTATAAATAGAC
66 AGATTATTAAACCACTTAAAGT-GAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATGGAC
* * *** *
8583957 TTTTCTTGTCTACGGATTTCATTCACTTCATGTTTCCCAATGCAAAGATCCAATTATGATCGATT
130 TTTTCTTGTCAATGGAAGGCATTCACTTCATGTTTCCTAATGCAAAGATCCAATTATGATCGATT
* * *
8584022 TTAGGTAGAAATAGAAAAGATTTCAACTTAAAATCATTTATAAGATTACAAAACCATTTAAAGTG
195 TTAAG-AAAAATAGAAAAGATTTCAA-TTAAAATCATTTATAAGATTATAAAACCATTTAAAGTG
* * * *
8584087 AGTAACAAGGCTTTCGAATGCATGAGAGACTATAAATAGAATTTTCATGTCAATGGATGGCTTTT
258 AGTAACAAGGCTTTCGAATGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTT
*
8584152 GGTTCATGTTTCATGATG
323 GCTTCATGTTTCATGATG
* * * * *
8584170 AAAACATCCAATTATTATCTATTTTAACCAAAAATGAAAAAACTTTCGATTTAAAATTATTTATG
1 AAAACATCCAATTATGATCTATTTTAACCAAAAATGAAAAAAATTTTGATTTAAAATCATTTATA
* * *
8584235 AGATTACTAAACCACTTAAAGTGAGTAATAAGGCTTTCAAAGGCATGAGTTA-TGATAAATGGAC
66 AGATTATTAAACCACTTAAAGTGAGTAACAAGGCTTTCAAAGGCATGAGTGACT-ATAAATGGAC
8584299 TTTT
130 TTTT
8584303 GTCAAGCCCA
Statistics
Matches: 903, Mismatches: 208, Indels: 85
0.76 0.17 0.07
Matches are distributed among these distances:
337 38 0.04
338 202 0.22
339 19 0.02
340 88 0.10
341 205 0.23
342 342 0.38
343 9 0.01
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (340 bp):
AAAACATCCAATTATGATCTATTTTAACCAAAAATGAAAAAAATTTTGATTTAAAATCATTTATA
AGATTATTAAACCACTTAAAGTGAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACT
TTTCTTGTCAATGGAAGGCATTCACTTCATGTTTCCTAATGCAAAGATCCAATTATGATCGATTT
TAAGAAAAATAGAAAAGATTTCAATTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGT
AACAAGGCTTTCGAATGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCT
TCATGTTTCATGATG
Found at i:8597128 original size:171 final size:169
Alignment explanation
Indices: 8596752--8598658 Score: 1438
Period size: 171 Copynumber: 11.3 Consensus size: 169
8596742 GTATAAGACC
* * * * * * * *
8596752 TTCGAAGGCATGAGTGACAATAAATGGACTTTTCATGTAAATAGATGGC-TTTAGCTTCACGTTT
1 TTCGATGGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATTCA-CTTCATGTTT
* * * ** * * *
8596816 CTTAATGGAAACATCCAATTATTATATG-TTTTAATGAAAAATGAAAAAAATTTTGATTTCAGAT
65 C-CAATGCAAACATCCAATTATAAT-TGATTTTAACCAAAAATG-AAAAGATTTTGATTTAAAAT
* * * * *
8596880 CCTTTATAAGATTAT-AAACGACTTAAAGTGAGTAATAAGGCT
127 CATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCT
* * * *
8596922 TTCGAAGGCATATGTGACGATAAATGAACTTTTCTTGTCAATGGATGGCATTCACTTCATGTTTG
1 TTCGATGGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATTCACTTCATGTTT-
* * * * *
8596987 CCAATACAAACATCCAATTATGATTGATTTTAACCCAAATTGAAGAAGATTTCT-ATTTAAAATT
65 CCAATGCAAACATCCAATTATAATTGATTTTAACCAAAAATGAA-AAGATTT-TGATTTAAAATC
* * *
8597051 GTTTATGAGATTATAAAACCATTAAAAGCGAGTAACAAGGCT
128 ATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCT
* ** *
8597093 TTCGATGGCATAAGTGACTATAAATGGAGTTTTCTTGTCAATGGATGGCATTTGCTGT-ACGTTT
1 TTCGATGGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATTCACT-TCATGTTT
8597157 CCTAATGCAAACATCCAATTATAATTGATTTTAACCAAAAATGAAAAAGATTTTGATTTAAAATC
65 CC-AATGCAAACATCCAATTATAATTGATTTTAACCAAAAATG-AAAAGATTTTGATTTAAAATC
* *
8597222 AATTATAAGATTATAAAACCATTTAAAGCGAGTAATAAGGCT
128 ATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCT
* * ** * * *
8597264 TTTGATGGCATGAA-TGACTATAAATGAACTTTT-TT-TC--TCAATGGC--CCCCTTTATGTTT
1 TTCGATGGCAT-AAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATTCACTTCATGTTT
* * ** * *
8597322 CTTAATGCAAACATCCAATTATGATCAATTTTAACAAAAAATGAAACATATTTTGATTTAAAATC
65 C-CAATGCAAACATCCAATTATAATTGATTTTAACCAAAAATGAAA-AGATTTTGATTTAAAATC
* * *
8597387 ATTGATAAGA-T-T--AACTATTTAAAGTGAGTAACAAGGC-
128 ATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCT
* * * * * * * *
8597424 TTCTGATGGCATGAGTGAATGTAAATGGACTTTTCTTCTCAGTTGATGCCATCCACTTCATGTTT
1 TTC-GATGGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATTCACTTCATG-TT
* ** * * ** *
8597489 TCTTAA-GCAAACATCCAATTATAAGGGACTTTAACAAAAAACAAAAAAGATTTTGATTCAAAAT
64 TC-CAATGCAAACATCCAATTATAATTGATTTTAACCAAAAA-TGAAAAGATTTTGATTTAAAAT
* * *
8597553 CATTTATAAGATTATAAAACCATTTAAATCGACTAACAAGGAT
127 CATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCT
* * * **
8597596 TTTGATGGCATGAA-TGACTATAAATGGACTTTTCCTCTCAATGGATGGCATTTGCTTCATGTTC
1 TTCGATGGCAT-AAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATTCACTTCATGTT-
* * ** * * *
8597660 CCCGATGCAAACATCCAATTATAATTGATTTTGTCAAAAAATAAAAACTATTTTGATTTAAAATC
64 TCCAATGCAAACATCCAATTATAATTGATTTTAACCAAAAATGAAAA-GATTTTGATTTAAAATC
* * *
8597725 ATTTATAAGATTATGAAACCATTTAAAGCAAGTAACAAAGCT
128 ATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCT
* * * * * * * ** *
8597767 TTCAAAGCCA-AGAGTGACTATAAATGGATTTTTTTTGTCAATGTATGGCTTTCGTTTCACGTTT
1 TTCGATGGCATA-AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATTCACTTCATGTTT
* * * *
8597831 CTCGATGCAATCATCCAATTATGATCTG-TTTTAACCAAAAATGAAAAAAGTTTTGATTTAAAAT
65 C-CAATGCAAACATCCAATTATAAT-TGATTTTAACCAAAAATGAAAAGA-TTTTGATTTAAAAT
* * * * * ** * *
8597895 CATTTTTAAGAGTATTATACCACTTAAATTGAGTAATAAGGTT
127 CATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCT
* * * ** *
8597938 TTCGAAGGCGTGAGCAACTATAAATGGACTTTTCTTGTTAATGGATGGC-TTCTGA-TTCATGTT
1 TTCGATGGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATTC--ACTTCATGTT
* * * ** *
8598001 TCCTTATACAAACATCCAATTATAATT-ATTTTAACCGAAATACAAACAAGATTTTGATTTAAAC
64 TCC-AATGCAAACATCCAATTATAATTGATTTTAACC-AAAAATGAA-AAGATTTTGATTTAAAA
* * *
8598065 TGATTTATAAGAATATAAAACCATTTAAAACGAGTAACAAGGCT
126 TCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCT
* * * ** * * *
8598109 TTCGATAGCATGAGTGATTATACTTGGACTTTCCTTCTCAATGGATGGCATTCACTTCATGCTTC
1 TTCGATGGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATTCACTTCATG-TTT
* * * * * * *
8598174 CCAATGGAAACATGCAATTATGATTTG-TTTTAAACCAAAAATGAAAAAATTTTCGACTGAAATT
65 CCAATGCAAACATCCAATTAT-AATTGATTTT-AACCAAAAATGAAAAGATTTT-GATTTAAAAT
* * *
8598238 CATTTATAAGATTATTAAACCACTTAAAGTGAGTAACAAGGCT
127 CATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCT
* * ** * * * ** * **
8598281 TTCGAAGGTATTCGTGATTATAAATGGACTTTTCTTGTCAATGGATAGCTTTCTTTTTACATTTC
1 TTCGATGGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATTCACTTCATGTTTC
* * * ** * * * *
8598346 CTTAT-CAAAACATTCAATTGTGGTTGATTTTATCCTAAAAGGAAAAATATTTTGATTTAAAATC
66 C-AATGC-AAACATCCAATTATAATTGATTTTAACCAAAAATG-AAAAGATTTTGATTTAAAATC
* * * *
8598410 ATTTATAAGATTATCAAACCATTTAAAGCGAGCAAGAAGACT
128 ATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCT
*
8598452 TGCGATGGCATGAA-TG---AT--AT--A-----------AATGGATGGCATTCACTTCATGTTT
1 TTCGATGGCAT-AAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATTCACTTCATGTTT
** * ** * * ** * **
8598498 CTTGATGCATACATCCTTTTGTGATTGATTTTAACCAAAAACAAAAATATTTTGATAAAAAAATC
65 C-CAATGCAAACATCCAATTATAATTGATTTTAACCAAAAATGAAAAGATTTTGAT-TTAAAATC
* * *
8598563 ATTGATAAGATTCTAAAACAATTTAAAGCGAGTAACAAGGCT
128 ATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCT
* * * *
8598605 TTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCA
1 TTCGATGGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATTCA
8598659 AAGGCATGAG
Statistics
Matches: 1373, Mismatches: 285, Indels: 157
0.76 0.16 0.09
Matches are distributed among these distances:
152 14 0.01
153 98 0.07
154 1 0.00
156 2 0.00
158 2 0.00
160 4 0.00
161 46 0.03
162 2 0.00
163 3 0.00
164 6 0.00
165 74 0.05
166 2 0.00
167 69 0.05
168 14 0.01
169 8 0.01
170 136 0.10
171 739 0.54
172 149 0.11
173 4 0.00
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.35
Consensus pattern (169 bp):
TTCGATGGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATTCACTTCATGTTTC
CAATGCAAACATCCAATTATAATTGATTTTAACCAAAAATGAAAAGATTTTGATTTAAAATCATT
TATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCT
Found at i:8600165 original size:42 final size:42
Alignment explanation
Indices: 8600068--8600193 Score: 153
Period size: 42 Copynumber: 3.0 Consensus size: 42
8600058 TGTTGATATG
*
8600068 GACCCGGCTATGTGCGAGTAGGAGTGCGCATATGCCGATGAT
1 GACCCGGCTATGTGCGAGTAGGAGTGCGCATAAGCCGATGAT
* *
8600110 GAGCCGGCTATGTGCGAGTAGGAGTGCGCATAAGCCGATGCT
1 GACCCGGCTATGTGCGAGTAGGAGTGCGCATAAGCCGATGAT
* * * * * * *
8600152 GACCCAGCCATGTGCTAGTGCGGAGTGCACATGAGCTGATGA
1 GACCCGGCTATGTGCGAGT-AGGAGTGCGCATAAGCCGATGA
8600194 CGATGGGAGA
Statistics
Matches: 71, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
42 54 0.76
43 17 0.24
ACGTcount: A:0.22, C:0.22, G:0.36, T:0.20
Consensus pattern (42 bp):
GACCCGGCTATGTGCGAGTAGGAGTGCGCATAAGCCGATGAT
Found at i:8606369 original size:54 final size:54
Alignment explanation
Indices: 8606307--8606463 Score: 210
Period size: 54 Copynumber: 2.9 Consensus size: 54
8606297 GGTGATACTA
* ** * *
8606307 TCCGGCTATTTGTTCGATGTGGTGGGATGTACATGAGTTGTGTGAGATGGGATG
1 TCCGGCTATGTGCACGATGTGGTGGGATGTACATGAGCTGGGTGAGATGGGATG
**
8606361 TTTGGCTATGTGCACGATGTGGTGGGATGCATA-ATG-GCTGGGTGAGATGGGATG
1 TCCGGCTATGTGCACGATGTGGTGGGATG--TACATGAGCTGGGTGAGATGGGATG
*
8606415 TCCGGCTATGTGCACGATGTGGTGGGATGCACATGAGCTGGGTGAGATG
1 TCCGGCTATGTGCACGATGTGGTGGGATGTACATGAGCTGGGTGAGATG
8606464 CACATGATGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
52 1 0.01
53 3 0.03
54 80 0.90
55 3 0.03
56 2 0.02
ACGTcount: A:0.18, C:0.11, G:0.41, T:0.30
Consensus pattern (54 bp):
TCCGGCTATGTGCACGATGTGGTGGGATGTACATGAGCTGGGTGAGATGGGATG
Found at i:8613498 original size:42 final size:42
Alignment explanation
Indices: 8613375--8613536 Score: 200
Period size: 42 Copynumber: 3.8 Consensus size: 42
8613365 TGTGGCCCCA
*
8613375 GCTATGTGCGAGTAGGAGTGCTCATACA-CCGATGATGACCCG
1 GCTATGTGCGAGTAGGAGTGCACATA-AGCCGATGATGACCCG
* *
8613417 GCTATGTGCGAGTAGGAGTGCATATAAGCCGATAATGACCCG
1 GCTATGTGCGAGTAGGAGTGCACATAAGCCGATGATGACCCG
* * **
8613459 GCTATGTGCGAGTAGGAGTGCACATAAGCTGATGCTGACCTA
1 GCTATGTGCGAGTAGGAGTGCACATAAGCCGATGATGACCCG
* * * *
8613501 GCCATGTGCTAGTGGGGAGTGCACATAAGCTGATGA
1 GCTATGTGCGAGT-AGGAGTGCACATAAGCCGATGA
8613537 CGATGGGAGA
Statistics
Matches: 105, Mismatches: 13, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
41 1 0.01
42 84 0.80
43 20 0.19
ACGTcount: A:0.26, C:0.20, G:0.32, T:0.22
Consensus pattern (42 bp):
GCTATGTGCGAGTAGGAGTGCACATAAGCCGATGATGACCCG
Found at i:8622824 original size:2 final size:2
Alignment explanation
Indices: 8622817--8622843 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8622807 TTTCTATAAC
8622817 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
8622844 CATAAACATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8623071 original size:37 final size:36
Alignment explanation
Indices: 8623023--8623093 Score: 106
Period size: 37 Copynumber: 1.9 Consensus size: 36
8623013 ATCACCGACA
* *
8623023 TGTGCATCCCCCACATCGCGCACAACTAATGTCATAG
1 TGTGCAACCCCCACATCACGCACAA-TAATGTCATAG
*
8623060 TGTGCAACCCCCACATCATGCACAATAATGTCAT
1 TGTGCAACCCCCACATCACGCACAATAATGTCAT
8623094 CCTCCACACT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
36 9 0.29
37 22 0.71
ACGTcount: A:0.30, C:0.34, G:0.14, T:0.23
Consensus pattern (36 bp):
TGTGCAACCCCCACATCACGCACAATAATGTCATAG
Found at i:8623109 original size:104 final size:104
Alignment explanation
Indices: 8622918--8623150 Score: 396
Period size: 104 Copynumber: 2.2 Consensus size: 104
8622908 CTAGCGTCAT
*
8622918 CATGTGCA-CCCCCACATCGCGCACAACTAATGCCATTGTGTGCAACCCCCACATCATGCACAAC
1 CATGTGCATCCCCCACATCGCGCACAACTAATGCCATAGTGTGCAACCCCCACATCATGCACAAC
* *
8622982 AATGTCATCCTCCACACTTCCACACCTTGTCATCACCGA
66 AATGTCATCCTCCACACTCCCACACCATGTCATCACCGA
* *
8623021 CATGTGCATCCCCCACATCGCGCACAACTAATGTCATAGTGTGCAACCCCCACATCATGCACAAT
1 CATGTGCATCCCCCACATCGCGCACAACTAATGCCATAGTGTGCAACCCCCACATCATGCACAAC
*
8623086 AATGTCATCCTCCACACTCCCACACCATGTCATCACCGG
66 AATGTCATCCTCCACACTCCCACACCATGTCATCACCGA
*
8623125 CATGTGCATCCCTCACATCGCGCACA
1 CATGTGCATCCCCCACATCGCGCACA
8623151 CACATAGTTA
Statistics
Matches: 122, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
103 8 0.07
104 114 0.93
ACGTcount: A:0.27, C:0.40, G:0.12, T:0.20
Consensus pattern (104 bp):
CATGTGCATCCCCCACATCGCGCACAACTAATGCCATAGTGTGCAACCCCCACATCATGCACAAC
AATGTCATCCTCCACACTCCCACACCATGTCATCACCGA
Found at i:8629142 original size:68 final size:68
Alignment explanation
Indices: 8629031--8629231 Score: 222
Period size: 68 Copynumber: 3.0 Consensus size: 68
8629021 CATGTTTGGT
* * * * * * **
8629031 ATGATGAATGCCATGAGATTGTGTATATGATGTAAATTTCATATACCATATGAGGTTATTAAGTG
1 ATGATAAATGCCATGAGATTATGTATATAATGTAAATTCCATATACCATATGAGATGATTAAGCA
*
8629096 TGC
66 AGC
* * * * **
8629099 ATGATTAATGCCATGAGATTATTTATATAATGTATATTCCATATACTACGTGAGATGATTAAGCA
1 ATGATAAATGCCATGAGATTATGTATATAATGTAAATTCCATATACCATATGAGATGATTAAGCA
8629164 AGC
66 AGC
* * * * *
8629167 ATGATAAATGCCATGAGATTATGTACATTATGTAAATTCCATATACCTTATGAGATAAGTAAGCA
1 ATGATAAATGCCATGAGATTATGTATATAATGTAAATTCCATATACCATATGAGATGATTAAGCA
8629232 TGTATGTGAA
Statistics
Matches: 108, Mismatches: 25, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
68 108 1.00
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.35
Consensus pattern (68 bp):
ATGATAAATGCCATGAGATTATGTATATAATGTAAATTCCATATACCATATGAGATGATTAAGCA
AGC
Found at i:8631073 original size:171 final size:168
Alignment explanation
Indices: 8630603--8631372 Score: 638
Period size: 171 Copynumber: 4.6 Consensus size: 168
8630593 GGATGTGACA
* * * ** *
8630603 TTAAAA-CATATCAAAATTGGATGTTTGCATCGAGAAACATGAAACA-AAACCATCTATTGACAA
1 TTAAAATC-TATCATAATTGGATGTTTGCATTGAGAAACATGAAGCAGATGCCATCCATTGACAA
* * *
8630666 GAAAAGTCCATTTATAGTCATTCATGCCTTCGAAAGCCTTATTACTCACTTTAAGTGCTTTTATA
65 GAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCACTTTAA-TG-GTTTATA
** * ** **
8630731 ATCCGATATATGATTTTAAAT-TGAAT-TTTTTCCATTTTTCG
128 ATCTTATAAATGATTTTAAATCAAAATATTTTT-TGTTTTT-G
* * * * * *
8630772 CTAAAA-CAGATCATGATTGGATGTTTGTATCG-GTAAACAT------GA--CCATCCATTGAGA
1 TTAAAATC-TATCATAATTGGATGTTTGCATTGAG-AAACATGAAGCAGATGCCATCCATTGACA
* * * *
8630827 AGAAAGGTCCATTTATAGTCAC-CAATGCCATCGAAAGCCTTGTCACTCGCTTTAAATGGATTTA
64 AGAAAAGTCCATTTATAGTCACTC-ATGCCTTCGAAAGCCTTGTTACTCACTTT-AATGG-TTTA
* *
8630891 TAATTTTATAAATGATTTTCAATCAAAATATTTTTTGTTTTTG
126 TAATCTTATAAATGATTTTAAATCAAAATATTTTTTGTTTTTG
* * *
8630934 CTTAAAATCTCTTATAATTGGATGTTTGTATTGAGAAACATGAAGCAGACTG-CATCCATTGACA
1 -TTAAAATCTATCATAATTGGATGTTTGCATTGAGAAACATGAAGCAGA-TGCCATCCATTGACA
* * * * *
8630998 TGAAAAGTTCATTTATAGTCACTCATGCCTTCAAAAGCATTGTTACTCACTTTAAGTGGTTCCAT
64 AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCACTTTAA-TGGTT-TAT
* * * **
8631063 AATGTTATAAATGATTTTAAATCGAAATGTTTTTCATTTTTGG
127 AATCTTATAAATGATTTTAAATCAAAATATTTTTTGTTTTT-G
** * * *
8631106 TTAAAATAGATCATAATTGGATGTTTGCATAG-GAAACATGAAGC-GAAAGCCATCCATAGACAA
1 TTAAAATCTATCATAATTGGATGTTTGCATTGAGAAACATGAAGCAG-ATGCCATCCATTGACAA
* * ** **
8631169 CAAACGTCCATTTATAG----TCATGCCTTCGAAAGCCTTGTTACTCGTTTTTAATTATTTTATA
65 GAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTC-ACTTTAA-TGGTTTATA
* *
8631230 ATCTTAT-AATTATTTTAAATTAAAATA-TTTTTGTTTTTG
128 ATCTTATAAATGATTTTAAATCAAAATATTTTTTGTTTTTG
** * *
8631269 TTGAAAATCTATCATAATTTAATGTTTGGATT-AGGAAACATGAAGCAGATGCCATCCATTGAGA
1 TT-AAAATCTATCATAATTGGATGTTTGCATTGA-GAAACATGAAGCAGATGCCATCCATTGACA
*
8631333 AGAAAAGTCCATTTACAGTCACTCATGCCATT-GAAAGCCT
64 AGAAAAGTCCATTTATAGTCACTCATGCC-TTCGAAAGCCT
8631373 AATAAGTGGT
Statistics
Matches: 482, Mismatches: 84, Indels: 70
0.76 0.13 0.11
Matches are distributed among these distances:
161 1 0.00
162 81 0.17
163 43 0.09
164 40 0.08
165 56 0.12
166 34 0.07
167 8 0.02
168 1 0.00
169 52 0.11
170 44 0.09
171 120 0.25
172 2 0.00
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.36
Consensus pattern (168 bp):
TTAAAATCTATCATAATTGGATGTTTGCATTGAGAAACATGAAGCAGATGCCATCCATTGACAAG
AAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCACTTTAATGGTTTATAATC
TTATAAATGATTTTAAATCAAAATATTTTTTGTTTTTG
Found at i:8631340 original size:335 final size:332
Alignment explanation
Indices: 8630603--8631361 Score: 844
Period size: 333 Copynumber: 2.3 Consensus size: 332
8630593 GGATGTGACA
* * * * * ** *
8630603 TTAAAA-CATATCAAAATTGGATGTTTGCATCGAGAAACATGAAACA-A-AACCATCTATTGACA
1 TTAAAATC-TATCATAATTGAATGTTTGGATTGAGAAACATGAAGCAGACTGCCATCCATTGACA
* * * **
8630665 AGAAAAGTCCATTTATAGTCATTCATGCCTTCGAAAGCCTTATTACTCACTTTAAGTGCTTTTAT
65 AGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCATTATTACTCACTTTAAGTGCTTCCAT
* * *
8630730 AATCCGATATATGATTTTAAATTGAATTTTTTCCATTTTTCGCTAAAACAGATCATGATTGGATG
130 AATCCGATAAATGATTTTAAATCGAATTTTTTCCATTTTTCGCTAAAACAGATCATAATTGGATG
* * * * * *
8630795 TTTGTATCGGTAAACATGACCATCCATTGAGAAGAAAGGTCCATTTATAGTCACCAATGCCATCG
195 TTTGCATAGGTAAACATGACCATCCATAGACAACAAACGTCCATTTATAGT--CCAATGCCATCG
* *
8630860 AAAGCCTTGTCACTCGCTTTAAATGGATTTATAATTTTATAAATGATTTTCAATCAAAATATTTT
258 AAAGCCTTGTCACTCGCTTTAAATGGATTTATAATCTTATAAATGATTTTAAATCAAAATATTTT
8630925 TTGTTTTTGC
323 TTGTTTTTGC
* * * * *
8630935 TTAAAATCTCTTATAATTGGATGTTTGTATTGAGAAACATGAAGCAGACTG-CATCCATTGACAT
1 TTAAAATCTATCATAATTGAATGTTTGGATTGAGAAACATGAAGCAGACTGCCATCCATTGACAA
* * *
8630999 GAAAAGTTCATTTATAGTCACTCATGCCTTCAAAAGCATTGTTACTCACTTTAAGTGGTTCCATA
66 GAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCATTATTACTCACTTTAAGTGCTTCCATA
*** * * *
8631064 ATGTTATAAATGATTTTAAATCGAAATGTTTTT-CATTTTTGGTTAAAATAGATCATAATTGGAT
131 ATCCGATAAATGATTTTAAATCG-AAT-TTTTTCCATTTTTCGCTAAAACAGATCATAATTGGAT
8631128 GTTTGCATAGG-AAACATGAAGCGAAAGCCATCCATAGACAACAAACGTCCATTTATAGT-C-AT
194 GTTTGCATAGGTAAACAT-----G--A-CCATCCATAGACAACAAACGTCCATTTATAGTCCAAT
* * * * * * *
8631190 GCCTTCGAAAGCCTTGTTACTCGTTTTTAAT-TATTTTATAATCTTAT-AATTATTTTAAATTAA
251 GCCATCGAAAGCCTTGTCACTCGCTTTAAATGGA-TTTATAATCTTATAAATGATTTTAAATCAA
8631253 AATA-TTTTTGTTTTTG-
315 AATATTTTTTGTTTTTGC
* *
8631269 TTGAAAATCTATCATAATTTAATGTTTGGATT-AGGAAACATGAAGCAGA-TGCCATCCATTGAG
1 TT-AAAATCTATCATAATTGAATGTTTGGATTGA-GAAACATGAAGCAGACTGCCATCCATTGAC
*
8631332 AAGAAAAGTCCATTTACAGTCACTCATGCC
64 AAGAAAAGTCCATTTATAGTCACTCATGCC
8631362 ATTGAAAGCC
Statistics
Matches: 359, Mismatches: 51, Indels: 31
0.81 0.12 0.07
Matches are distributed among these distances:
332 38 0.11
333 94 0.26
334 44 0.12
335 93 0.26
336 18 0.05
337 41 0.11
338 2 0.01
340 1 0.00
341 28 0.08
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (332 bp):
TTAAAATCTATCATAATTGAATGTTTGGATTGAGAAACATGAAGCAGACTGCCATCCATTGACAA
GAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCATTATTACTCACTTTAAGTGCTTCCATA
ATCCGATAAATGATTTTAAATCGAATTTTTTCCATTTTTCGCTAAAACAGATCATAATTGGATGT
TTGCATAGGTAAACATGACCATCCATAGACAACAAACGTCCATTTATAGTCCAATGCCATCGAAA
GCCTTGTCACTCGCTTTAAATGGATTTATAATCTTATAAATGATTTTAAATCAAAATATTTTTTG
TTTTTGC
Found at i:8640000 original size:26 final size:26
Alignment explanation
Indices: 8639964--8640025 Score: 115
Period size: 26 Copynumber: 2.4 Consensus size: 26
8639954 TTGCATATGA
8639964 GATGATGATGATGGGATGGTGTGCAT
1 GATGATGATGATGGGATGGTGTGCAT
8639990 GATGATGATGATGGGATGGTGTGCAT
1 GATGATGATGATGGGATGGTGTGCAT
*
8640016 GTTGATGATG
1 GATGATGATG
8640026 GGTATATGGT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.23, C:0.03, G:0.42, T:0.32
Consensus pattern (26 bp):
GATGATGATGATGGGATGGTGTGCAT
Found at i:8656889 original size:170 final size:166
Alignment explanation
Indices: 8656663--8657128 Score: 470
Period size: 170 Copynumber: 2.7 Consensus size: 166
8656653 AAGCGAAAGT
* *
8656663 CATCCATTGACAAGAAAAGTTCATTTGTAGTCACTCATGGCTTCGAAAGCCTTGTTACTTGCTCT
1 CATCCATTGACAAG-AAAGTCCATTTATAGTCACTCATGGCTTCGAAAGCCTTGTTACTTGCTCT
*
8656728 AAATGGTTACGTAATCATATAACTACTTTTAAATCAATTTTTTTTTCATTTTTGGTTAAAATCAA
65 AAATGGTTA-ATAATC-TATAACTA-TTTTAAATCAA-TTTTTTTTCATTTTTGGTTAAAA-CAA
* ** *
8656793 -TCATAATTGCTTGTTTCCTTTAAGAAACATGAAGCAGATGC
125 GTCATAATTGCATGTTTCCACTAAGAAACATGAAACAGATGC
** * * * * *
8656834 CATCCATTGA-AGAGAAAGTCCATTTATAGTCACTCATACCATCGAAAGTCTTGTTAGTTGTTTT
1 CATCCATTGACA-AGAAAGTCCATTTATAGTCACTCATGGCTTCGAAAGCCTTGTTACTTGCTCT
* * * * * * *
8656898 AATTGCTTTTATAATCTTTGAACAATTTTAAATTAAAATATTTTTT-ATTTTTGGTTAAAACAAG
65 AAATG-GTTAATAATCTAT-AACTATTTTAAA-T-CAATTTTTTTTCATTTTTGGTTAAAACAAG
* * * *
8656962 TCATAATTGGATGTTTGCACTAGGAAACATGAAACGGATGC
126 TCATAATTGCATGTTTCCACTAAGAAACATGAAACAGATGC
* * * * *
8657003 CATCCGTTGACAAGAAATGTCCATATATAGTCACTCATGGCTTCAAAAGCCTTATTACTCGCTCT
1 CATCCATTGACAAGAAA-GTCCATTTATAGTCACTCATGGCTTCGAAAGCCTTGTTACTTGCTCT
* **
8657068 AAATGGTTTAATAATCTTATAAATGATTTTAAGCCAATTTTTTTTCATTTTTGGTGTAAAA
65 AAATGG-TTAATAATC-TATAACT-ATTTTAAATCAATTTTTTTTCATTTTTGGT-TAAAA
8657129 AGATCATGAT
Statistics
Matches: 235, Mismatches: 47, Indels: 26
0.76 0.15 0.08
Matches are distributed among these distances:
168 3 0.01
169 79 0.34
170 123 0.52
171 30 0.13
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.39
Consensus pattern (166 bp):
CATCCATTGACAAGAAAGTCCATTTATAGTCACTCATGGCTTCGAAAGCCTTGTTACTTGCTCTA
AATGGTTAATAATCTATAACTATTTTAAATCAATTTTTTTTCATTTTTGGTTAAAACAAGTCATA
ATTGCATGTTTCCACTAAGAAACATGAAACAGATGC
Found at i:8657143 original size:170 final size:167
Alignment explanation
Indices: 8656546--8657842 Score: 662
Period size: 171 Copynumber: 7.6 Consensus size: 167
8656536 TCTCACATTT
* * * * *
8656546 TTACTCTCTTTAAGTGGTTTACTAATCTTATAAATGATTTTAAACAATTTTTTTTTTCATTTCTG
1 TTACTCGCTCTAAATGGTTTAATAATCTTATAAATGATTTTAAACAA-TTTTTTTTTCATTTTTG
* * * * * ** * * *
8656611 TTTAAAACAGGTCACAATTGGGTGTTTGCATTGAGAAATGTGAAGCGAAAGTCATCCATTGACAA
65 GTTAAAACA-ATCATAATTGGATGTTTGCATAG-GAAACATGAAGCGGATGCCATCCATTGACAA
* *
8656676 GAAAAGTTCATTTGTAGTCACTCATGGCTTCGAAAGCCTTG
128 G-AAAGTCCATTTATAGTCACTCATGGCTTCGAAAGCCTTG
* * * *
8656717 TTACTTGCTCTAAATGG-TTACGTAATCATATAACT-ACTTTTAAATCAATTTTTTTTTCATTTT
1 TTACTCGCTCTAAATGGTTTA-ATAATCTTATAAATGA-TTTTAAA-CAATTTTTTTTTCATTTT
** * * * *
8656780 TGGTTAAAATCAATCATAATTGCTTGTTTCCTTTAAGAAACATGAAGCAGATGCCATCCATTGA-
63 TGGTTAAAA-CAATCATAATTGGATGTTTGC-ATAGGAAACATGAAGCGGATGCCATCCATTGAC
** * *
8656844 AGAGAAAGTCCATTTATAGTCACTCATACCATCGAAAGTCTTG
126 A-AGAAAGTCCATTTATAGTCACTCATGGCTTCGAAAGCCTTG
* * * * * * * * ** * * *
8656887 TTAGTTGTTTTAATTGCTTTTATAATCTT-TGAACAATTTTAAATTAAAATATTTTTT-ATTTTT
1 TTACTCGCTCTAAATGGTTTAATAATCTTATAAATGATTTTAAA--CAATTTTTTTTTCATTTTT
* *
8656950 GGTTAAAACAAGTCATAATTGGATGTTTGCACTAGGAAACATGAAACGGATGCCATCCGTTGACA
64 GGTTAAAACAA-TCATAATTGGATGTTTGCA-TAGGAAACATGAAGCGGATGCCATCCATTGACA
* * *
8657015 AGAAATGTCCATATATAGTCACTCATGGCTTCAAAAGCCTTA
127 AGAAA-GTCCATTTATAGTCACTCATGGCTTCGAAAGCCTTG
*
8657057 TTACTCGCTCTAAATGGTTTAATAATCTTATAAATGATTTTAAGCCAA-TTTTTTTTCATTTTTG
1 TTACTCGCTCTAAATGGTTTAATAATCTTATAAATGATTTTAA-ACAATTTTTTTTTCATTTTTG
* * * *
8657121 GTGTAAAA-AGATCATGATTGGATGTTTGCAT-TG----A-GAAAC-G-TGACCATCCATTGAAA
65 GT-TAAAACA-ATCATAATTGGATGTTTGCATAGGAAACATGAAGCGGATG-CCATCCATTG-AC
* * **
8657177 AAAAAAATCCATTTATAGTCACTCAT-GCTATCGAAAATCTTG
126 AAGAAAGTCCATTTATAGTCACTCATGGCT-TCGAAAGCCTTG
* * * * * * * *** * *
8657219 TCACTCGCTTTAAATGAATTTTATAAACTTATAAATGATTTTCAATCAAAATAGGTATT-GTTTT
1 TTACTCGCTCTAAATG-GTTTAATAATCTTATAAATGATTTT-AAAC-AATTTTTTTTTCATTTT
** ** ** * *
8657283 TCCTTAAAATCTCTTGTAATTGGATGTTTGCATCGAGG-AACATGAAGCGAATGGCATCCATTGA
63 TGGTTAAAA-CAATCATAATTGGATGTTTGCAT--AGGAAACATGAAGCGGATGCCATCCATTGA
* * * * * * * *
8657347 CATGAAAATTCTATTTATAGTCATTGAAGCCTTCAAAAGCCTTG
125 CAAG-AAAGTCCATTTATAGTCACTCATGGCTTCGAAAGCCTTG
* * * * * ** *
8657391 TTACTCACAT-GAAGTGGTTTCACAATCTTATAAATGATTTTAAATCAA-AATATTTTCTATTTT
1 TTACTCGC-TCTAAATGGTTTAATAATCTTATAAATGATTTTAAA-CAATTTTTTTTTC-ATTTT
* ** * ** ** * ** * *
8657454 AGGTTAAAACAAATCATAATTGGATGTTCACATTAGAAAATGTGAAGCAAAAGTAACCCATTAAC
63 TGGTTAAAAC-AATCATAATTGGATGTTTGCA-TAGGAAACATGAAGCGGATGCCATCCATTGAC
* * * * * *
8657519 ATGAAAAGTCCATTTATATTCACACATGACTTCAAAAGCGTTG
126 AAG-AAAGTCCATTTATAGTCACTCATGGCTTCGAAAGCCTTG
* * * * * * ** * **
8657562 TTATTCGCTTTAAATAGTTAAATAATCTTATAATTGATTTTAAATTAAAATATTTCACATTTTTG
1 TTACTCGCTCTAAATGGTTTAATAATCTTATAAATGATTTTAAA-CAATTTTTTTTTCATTTTTG
* ** * * * * * * * *
8657627 CTTAAAATTGATCATAGTTAGATTTTTGCATTGGGAAACGTGAAGCAGATGGCATCC-TATAACA
65 GTTAAAA-CAATCATAATTGGATGTTTGCA-TAGGAAACATGAAGCGGATGCCATCCAT-TGACA
* * * * *
8657691 AGATAAGTCCATTTATAGTTACTCATGCCATCGAAAGTCTAG
127 AGA-AAGTCCATTTATAGTCACTCATGGCTTCGAAAGCCTTG
* * * * ** *
8657733 TTACTTGCTTTTAAGTGATTCT-ATAATCTTATAAATGATTTTAAGTTGAA--TTATTTTCATTT
1 TTACTCGC-TCTAAATGGTT-TAATAATCTTATAAATGATTTTAA--ACAATTTTTTTTTCATTT
* * * *
8657795 TTGGTTATAACAGATCAAAATTGGATGTTTGCATTTGGAAACAAGAAG
62 TTGGTTAAAACA-ATCATAATTGGATGTTTGCA-TAGGAAACATGAAG
8657843 GAAAAGACAT
Statistics
Matches: 848, Mismatches: 223, Indels: 110
0.72 0.19 0.09
Matches are distributed among these distances:
161 5 0.01
162 50 0.06
163 39 0.05
164 28 0.03
165 4 0.00
167 1 0.00
168 4 0.00
169 82 0.10
170 160 0.19
171 382 0.45
172 86 0.10
173 7 0.01
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (167 bp):
TTACTCGCTCTAAATGGTTTAATAATCTTATAAATGATTTTAAACAATTTTTTTTTCATTTTTGG
TTAAAACAATCATAATTGGATGTTTGCATAGGAAACATGAAGCGGATGCCATCCATTGACAAGAA
AGTCCATTTATAGTCACTCATGGCTTCGAAAGCCTTG
Found at i:8659537 original size:170 final size:168
Alignment explanation
Indices: 8657872--8663397 Score: 2200
Period size: 170 Copynumber: 32.7 Consensus size: 168
8657862 AAAAAGTTCA
* * * * * * * *
8657872 TTTAAATGGTTTTGTAATCTTATAAATTATTTTCAATC-GAATTGTTTTTCATTTCTAGTTAATA
1 TTTAAATAGTTTTATAATCTTATAAATGATTTTAAATCAAAATT-TTTTT-ATTTTTGGTTAAAA
* * * ** * * * * * * *
8657936 CAGGTCATAATCGGACATATGCATTAAGAAACATGAAGAACAAACCATCTATTGAGAACAAAAGT
64 CAGATCATAATTGAATGTTTGCATTAAG-AAC-CGAAG-AGAAGCCATCCATTGATAAGAAAAGT
* * * * *
8658001 CCA-TTCATAGTCACTTATCCCATCAAAAGCCTTGTTACT-TGT
126 CCATTTC-TAGTCACTCATGCCTTCAAAAGCCTTGTTACTCAGC
* * * * * * ** *
8658043 TTTCAATGGTTTTCTAATCTTATAAATGATTTGAAATCAAAATCTTTTTCATTTTTGATTGTAAT
1 TTTAAATAGTTTTATAATCTTATAAATGATTTTAAATCAAAAT-TTTTTTATTTTTGGTTAAAAC
*** * * ** * * *
8658108 TCCTCATAATTGGAGGTTTG-AGTCGAGAAGCATGAAGCAGATGCCATCCATTGA-CAGTAAAAG
65 AGATCATAATTGAATGTTTGCA-TTAAGAA-C-CGAAG-AGAAGCCATCCATTGATAAG-AAAAG
* *
8658171 TCCATTTATAGTCACTCATGTCTTTC-AAAG-C---TTACT-AGC
125 TCCATTTCTAGTCACTCATG-CCTTCAAAAGCCTTGTTACTCAGC
* * * * * * * * *
8658210 TTTAAATTGTCTTATAATCTTACAAATTATTTTCAATCAAAATCTTTTCATTTTTGTTTAAAATT
1 TTTAAATAGTTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTTTATTTTTGGTTAAAA-C
* * * * * * * *
8658275 A-ATCATAATTAAATGTTTGCATCAGGAAATCTGAAGCTGATGCCATCCATTGAGAA-AAAAATC
65 AGATCATAATTGAATGTTTGCATTAAG-AA-CCGAAG-AGAAGCCATCCATTGATAAGAAAAGTC
* * *
8658338 CATTTATAGTCACTCATGCCATT-GAAAGCCTTGTCACTCA-C
127 CATTTCTAGTCACTCATGCC-TTCAAAAGCCTTGTTACTCAGC
* * * *
8658379 ATTAAATAGTTTTATAATTTTAT-AAT-A----ACAT-AAAATCTTTTTTATTTTTGGTGAAAA-
1 TTTAAATAGTTTTATAATCTTATAAATGATTTTAAATCAAAAT-TTTTTTATTTTTGGTTAAAAC
** * * * * * * * * *
8658436 ACTCTCATAATTGGATTTTTACATTGACA-AACAGATAGCGGATGCCATCCATTCATAACAAATG
65 A-GATCATAATTGAATGTTTGCATT-A-AGAACCGA-AG-AGAAGCCATCCATTGATAAGAAAAG
* * * * * *
8658500 TCAATTTATAGTCATTAATGCCTTCAAAAGCCTTATTACTC-TC
125 TCCATTTCTAGTCACTCATGCCTTCAAAAGCCTTGTTACTCAGC
* * * * * * ** *
8658543 TTTAAGTGGTTTAATAATCTTATAAATGATTTTAAATTAAAAATTTTTTCATTTCTAATTTAAAC
1 TTTAAATAGTTTTATAATCTTATAAATGATTTTAAA-TCAAAATTTTTTTATTTTTGGTTAAAAC
* * ** * * ** * * *
8658608 ATATCACAATTGGGTGTTTGCATGAGGAAATGTGAAGCAGAAGCCATCCATTGACAAGAAACGTT
65 AGATCATAATTGAATGTTTGCATTAAG-AA-CCGAAG-AGAAGCCATCCATTGATAAGAAAAGTC
* * * * * *
8658673 CATTTATAGTCATTTATGGCTTCGAAAGCCTTGTTACT-TGC
127 CATTTCTAGTCACTCATGCCTTCAAAAGCCTTGTTACTCAGC
* * * * ** * *
8658714 TTTAAATGGTTATATAATCTTATAACTGA-TTTCAATCAAAAAGTTTTCATTTTTGGTTACAATC
1 TTTAAATAGTTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTTTATTTTTGGTTA-AAAC
* * *** * * *
8658778 -GATCATAATTGGATGTTTTCATTGGAA-ATGTGAAGTA-AATGCCATCCATTAAGAAGAATAGT
65 AGATCATAATTGAATGTTTGCATT--AAGAACCGAAG-AGAA-GCCATCCATTGATAAGAAAAGT
* * * *
8658840 CCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTAGTC-G-
126 CCATTTCTAGTCACTCATGCCTTCAAAAGCCTTGTTACTCAGC
* * * * * ** *
8658881 TTCTAATTAGTTTTATGATGTTATGAACGATTTTAAATCTAATTTTTTTTTTGTTTTTGGTTAAA
1 TT-TAAATAGTTTTATAATCTTATAAATGATTTTAAATC-AA-AATTTTTTTATTTTTGGTTAAA
* * * ** * * *
8658946 ATCA-ATCATAATTGGATGTTTACATTAGGAAATGTGAAGCGGATA-CCATCCATTGACAAAAAA
63 A-CAGATCATAATTGAATGTTTGCATTAAG-AA-CCGAAG-AGA-AGCCATCCATTGATAAGAAA
* * ** *
8659009 AGTCCATTTATAGTCACTCATGGCTTTGAAAGCCTTGTTACTTA-C
123 AGTCCATTTCTAGTCACTCATGCCTTCAAAAGCCTTGTTACTCAGC
* * * * * * *
8659054 TCTAAGT-GGTTTAGTAATCTTGTAAATGATTCTAAA-CTAAATCTTTTTTCATTTTTAGTTAAA
1 TTTAAATAGTTTTA-TAATCTTATAAATGATTTTAAATCAAAAT-TTTTTT-ATTTTTGGTTAAA
* * * * * * * * * *
8659117 ATAGATCATGATTGGATGTTTGCATT-GGTAA---ACGTG-A-CCATCCTTTAAGAAGAAAGGTC
63 ACAGATCATAATTGAATGTTTGCATTAAG-AACCGAAGAGAAGCCATCCATTGATAAGAAAAGTC
* * * * * **
8659176 CATTTATAGTTAGTCATGCCATCGAAAGCCTTGTCGCTCA-C
127 CATTTCTAGTCACTCATGCCTTCAAAAGCCTTGTTACTCAGC
* * * * *
8659217 TTTAAA-AGGGTTTATAATCTTATTAATGATTTTCAATCAAAATATTTTTTGTTTTTGTTTAAAA
1 TTTAAATA-GTTTTATAATCTTATAAATGATTTTAAATCAAAAT-TTTTTTATTTTTGGTTAAAA
** ** * * * ** * * * * *
8659281 TC-TCTTGTAATTGGATATTTGTATCGAGAAACATGAAGCGGATAG-CATCCATTTACATGAAAA
64 -CAGATCATAATTGAATGTTTGCATTAAG-AAC-CGAAG-AGA-AGCCATCCATTGATAAGAAAA
* * * * *
8659344 TTCTATTTATAGTAATTCATGCCTTCAAAAGCCTTGTTACT-AGC
124 GTCCATTTCTAGTCACTCATGCCTTCAAAAGCCTTGTTACTCAGC
* * * *
8659388 TTTAAGTAGTTTCATAATCTTATAAGTGA-TTTAAATCAAAATGTTTTTTATTTTTGGTGAAAAC
1 TTTAAATAGTTTTATAATCTTATAAATGATTTTAAATCAAAAT-TTTTTTATTTTTGGTTAAAAC
* * *
8659452 AGATCATAATTGAATGTTTGCGTTAGGAACCGCAAAGAGGAAGCCATCCATTGTTAAGAAAAGTC
65 AGATCATAATTGAATGTTTGCATTAAGAACCG--AAGA-GAAGCCATCCATTGATAAGAAAAGTC
* * * *
8659517 CGTTTCTAG-CTACTCATGCCTTCGAAAGCCTAGTTACT-TGC
127 CATTTCTAGTC-ACTCATGCCTTCAAAAGCCTTGTTACTCAGC
* * * * *** *
8659558 TTTAAATGGTTTTATTATCTTATAAATGATTTTAAACCAAAATATTTTTCATTTTCAATTAAAAT
1 TTTAAATAGTTTTATAATCTTATAAATGATTTTAAATCAAAAT-TTTTTTATTTTTGGTTAAAAC
* * * * * * **
8659623 AGATCAT-A-TGGATGTTTGCATCAAGAAACGTGTAGAGATGCCATCCACTGGGAAGAAAAGTCC
65 AGATCATAATTGAATGTTTGCATTAAG-AAC-CGAAGAGAAGCCATCCATTGATAAGAAAAGTCC
* * *
8659686 ATTTAC-AGTCACTCATACCATCAAAA-CTCTTATTACTCAG-
128 ATTT-CTAGTCACTCATGCCTTCAAAAGC-CTTGTTACTCAGC
* * *
8659726 TTTAAATAGTTTTATAACCTTATAAATGACTTTAAATCAAAATTTTTTTATTTATGGTTAAAACA
1 TTTAAATAGTTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTTTATTTTTGGTTAAAACA
* * * *
8659791 TATCATAATTGGATGTTTGCATCTATA-AACATGAAGTAGAAGCCATCCATTGATAAGAAATGTC
66 GATCATAATTGAATGTTTGCAT-TA-AGAAC-CGAAG-AGAAGCCATCCATTGATAAGAAAAGTC
* * * **
8659855 CATTTATAGTCAGTCATGTCTTTGAAAGCCTTGTTACTCA-C
127 CATTTCTAGTCACTCATGCCTTCAAAAGCCTTGTTACTCAGC
* * * * *
8659896 TTTAAATTA-TTTTATAATCTTATAAATTATTTTAAATCAAAATATTTTTGTTTTTGTTTAAAAT
1 TTTAAA-TAGTTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTTTATTTTTGGTTAAAAC
* * * * * * * *** * * *
8659960 TGATCATAACTAAATGTTTGCATCAATGAACATGAAGCGCAGGTGTTCCAATGAGAAGAAAAGTT
65 AGATCATAATTGAATGTTTGCATTAA-GAAC-CGAAGAG-AAGCCATCCATTGATAAGAAAAGTC
* * * * * *
8660025 CATTTATAATCATTCATGCCATC-AAAG-TTGTGTTACTC-TC
127 CATTTCTAGTCACTCATGCCTTCAAAAGCCT-TGTTACTCAGC
** * * ** * *
8660065 TTTAGGTGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTTTATTTCTGGTCAAAAC
1 TTTAAATAGTTTTATAATCTTATAAATGATTTTAAA-TCAAAATTTTTTTATTTTTGGTTAAAAC
* * * *** * * ** * * *
8660130 ATATCATAATTGGATATTTGCATCGGGAAACCTAAAGCGGAAGCTGTTCATTGACAAGAAAAGCC
65 AGATCATAATTGAATGTTTGCATTAAG-AACC-GAAG-AGAAGCCATCCATTGATAAGAAAAGTC
* *
8660195 CATTTATAGTCACTCATGCCTTCGAAAA-CCTTGTTACTCA-T
127 CATTTCTAGTCACTCATGCCTTC-AAAAGCCTTGTTACTCAGC
* * * * * *
8660236 TTTAAATTGTTTTATAATCTTATAAATTATTTGAAATCAAAATATTTTT-GTTTTGTTTAAAATC
1 TTTAAATAGTTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTTTATTTTTGGTTAAAA-C
* * * * * * * * *
8660300 -GATCATAATTAAATGTTTGAATCAAGAAACATGAA-ACAAAGGCCTTCTAATGAGAAGAAAAGT
65 AGATCATAATTGAATGTTTGCATTAAG-AAC-CGAAGA-GAA-GCCATCCATTGATAAGAAAAGT
* * * * *
8660363 CAATTTATTA-TCACTCATGCCATCGAAAGCCATGTTACTC-GC
126 CCATTT-CTAGTCACTCATGCCTTCAAAAGCCTTGTTACTCAGC
* * * ** ** * * *
8660405 TTTAAGTGGTTTTATAATCTTTTAAATGATGCTACGT-TAAATTTTTTCATTTTTGATTAAAACA
1 TTTAAATAGTTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTTTATTTTTGGTTAAAACA
* * * * * * * * **
8660469 TATCATAATTGGATGTTTGCATCACGAAACGTGAAGCAGAAGCGATCCATTGACAATAAAAGTTG
66 GATCATAATTGAATGTTTGCATTAAG-AAC-CGAAG-AGAAGCCATCCATTGATAAGAAAAGTCC
* * * ** * * **
8660534 ATTTATGGTCATTGTTGCCTTCGAAAGCCTTATTACTC-TT
128 ATTTCTAGTCACTCATGCCTTCAAAAGCCTTGTTACTCAGC
* * * * * *
8660574 TTTAACTGGTTTAAGAACCTTATAAATGATTTTAAAT-AAAATTTTTTTCATCTTTGGTTAAAAC
1 TTTAAATAGTTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTTT-ATTTTTGGTTAAAAC
* * ** * * * * * * * *
8660638 ATATCACAATTGGGTGTTTGCATCAGGAAACATGAAGCGAAAGCTATCCACTAATAAAAAAAGTC
65 AGATCATAATTGAATGTTTGCATTAAG-AAC-CGAAGAG-AAGCCATCCATTGATAAGAAAAGTC
* * * * *
8660703 CATTTATAGTCACTCATGGCTTCGAATGCCTTGTTACT-TGC
127 CATTTCTAGTCACTCATGCCTTCAAAAGCCTTGTTACTCAGC
* * * * * * * *
8660744 TTTAAATGGTTATATAATCTTATAACTTATTTTAAATCAAAACTTTTATCATTTTTAGTTAAAAT
1 TTTAAATAGTTTTATAATCTTATAAATGATTTTAAATCAAAA-TTTTTTTATTTTTGGTTAAAAC
* * * * * *
8660809 AGATCATAATTGGATGTTTCCATTGAGAAACATGAAGTAGATGGCATCCATTGA-AGAGAAAAGT
65 AGATCATAATTGAATGTTTGCATTAAG-AAC-CGAAG-AGAAGCCATCCATTGATA-AGAAAAGT
* * * * *
8660873 CCATTTAC-AATCAC-CTATGCCATCGAAAGCCTTGTTAGTCA-T
126 CCATTT-CTAGTCACTC-ATGCCTTCAAAAGCCTTGTTACTCAGC
* * * * * *
8660915 TTTAATTACTTTTATAATTTTATAAATGATTTTAAATGAAAATAATTTTTGTTTTTGGTTAAAAT
1 TTTAAATAGTTTTATAATCTTATAAATGATTTTAAATCAAAAT-TTTTTTATTTTTGGTTAAAA-
* * *** * * *
8660980 TA-ATCATAATTGGATGTTTGCAATGGGGAACGTGACGTAGATGCCATCCATTGATAAGAAAAGT
64 CAGATCATAATTGAATGTTTGC-ATTAAGAAC-CGAAG-AGAAGCCATCCATTGATAAGAAAAGT
* *
8661044 CCATTTATAGTCACTCATGGCTTCAAAAGCCTTGTTACTCA-C
126 CCATTTCTAGTCACTCATGCCTTCAAAAGCCTTGTTACTCAGC
* ** * * ** ** * *
8661086 TCTATGTGGTTTAATAAAGTTATAAATGATTTTAAATCAAAAGGTTTGCTCATTTTTGGCTAAAA
1 TTTAAATAGTTTTATAATCTTATAAATGATTTTAAATCAAAA--TTTTTTTATTTTTGGTTAAAA
* ** * * * * *
8661151 AAGATCATGGTTTGACA--TTTGCATCAGGAA---ATGTG-A-CCATCCATTGAGAAGAAAAGTC
64 CAGATCAT-AATTGA-ATGTTTGCATTAAGAACCGAAGAGAAGCCATCCATTGATAAGAAAAGTC
* * * ** *
8661209 CATTTATAGGCACTCAAGCCATT-GGAAGCCTTGTCACTC-GC
127 CATTTCTAGTCACTCATGCC-TTCAAAAGCCTTGTTACTCAGC
* * * * * *
8661250 TTTAAATCGATTTATAATCTTATAAATGATTTTCAATCAAAATATTTTTCATTGTTGCTTAAAAT
1 TTTAAATAGTTTTATAATCTTATAAATGATTTTAAATCAAAAT-TTTTTTATTTTTGGTTAAAA-
** * ** * * * * * * *
8661315 C-TCTCATAATTGGATGTTTGCATCGAGAAACATGAA-ACAAATGGCGTCCATTGACATGAAAAT
64 CAGATCATAATTGAATGTTTGCATTAAG-AAC-CGAAGA-GAA-GCCATCCATTGATAAGAAAAG
* * * *
8661378 TCCATTTATAGTTC-CTCAAGCTTTCAAAAGCCTTGTTACTTA-C
125 TCCATTTCTAG-TCACTCATGCCTTCAAAAGCCTTGTTACTCAGC
* * * * * *
8661421 TTTAAGTGGTTTCATAATCTTATAAATAATTTGAAAT-AGAAATTTTATTCCATTTTTGGTTAAA
1 TTTAAATAGTTTTATAATCTTATAAATGATTTTAAATCA-AAATTTT-TT-TATTTTTGGTTAAA
** * * * * * *
8661485 ATGGATCATAATTGTATGTTTGTATTAGGAAACATGAAGCAGAAGCCATCCATAGAAAAGAAAAG
63 ACAGATCATAATTGAATGTTTGCATTAAG-AAC-CGAAG-AGAAGCCATCCATTGATAAGAAAAG
* * *
8661550 TCCATTTATAGTCACTCATGCCTTCAAAAGTCATGTTACTC-GC
125 TCCATTTCTAGTCACTCATGCCTTCAAAAGCCTTGTTACTCAGC
*
8661593 TTTAAATTA-TTTTA-AATC--A-AAAT-A-TTT---TC-----------ATTTTTGTTTAAAAT
1 TTTAAA-TAGTTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTTTATTTTTGGTTAAAA-
* * * ** * * * *
8661637 C-TATCATAATTGAATATTTGTATTGGGAAACGTAAAGTGAATGCCATCCATTGAAAAGAAAAAT
64 CAGATCATAATTGAATGTTTGCATTAAGAACCG--AAGAGAA-GCCATCCATTGATAAGAAAAGT
* **
8661701 CCATTTAC-AGTCACTCATGCCATCGAAAA-CCTTGCAACTC-GC
126 CCATTT-CTAGTCACTCATGCCTTC-AAAAGCCTTGTTACTCAGC
** * ** ** * *
8661743 TTT-AAGCGATTTTATAACCTTATAAATGATTTTAAATTGATTTTTTTTTCATTTCTAGTTAAAA
1 TTTAAATAG-TTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTTT-ATTTTTGGTTAAAA
* * * * * * * *
8661807 CAAAACATAATT-AGATGTTTACATCAACAAACGTGAAGTAGAAGCCATCCATTGATAGGAAAAT
64 CAGATCATAATTGA-ATGTTTGCATTAA-GAAC-CGAAG-AGAAGCCATCCATTGATAAGAAAAG
** * **
8661871 TTTATTTAC-AGTCACTCATTCCTTTGAAAGCCTTGTTACTC-GC
125 TCCATTT-CTAGTCACTCATGCCTTCAAAAGCCTTGTTACTCAGC
* * * * * *
8661914 TTTAAATTGTTTTATAATCTTATAAATTATTTTAAATC-AAATATTTTTGTTTTT-ATTAAATC-
1 TTTAAATAGTTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTTTATTTTTGGTTAAAACA
* ** * * * *
8661976 GATCATAATTAAATGTTTGCATTGGGAAACATGAAGCGAAGACCTTCCATTGAGAAGAAAAGTCC
66 GATCATAATTGAATGTTTGCATTAAG-AAC-CGAAGAGAAG-CCATCCATTGATAAGAAAAGTCC
* * * *
8662041 ATTTATAGTCACTCATGCCATCAAAAGCCGTATTACTC-GC
128 ATTTCTAGTCACTCATGCCTTCAAAAGCCTTGTTACTCAGC
* * * * ** * **
8662081 TTTAAGTGGTTTTATAACCTTATAAATGAATTTAAAT-TGAATTTTTTTAATTTCTAATTAAAAC
1 TTTAAATAGTTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTTT-ATTTTTGGTTAAAAC
* * ** ** * * * *
8662145 ATATCATAATTGGATGTTTGCATTGGGTAACATAAAGTAAAAGCCATCCTTTGACAACAAAAGTC
65 AGATCATAATTGAATGTTTGCATTAAG-AAC-CGAAG-AGAAGCCATCCATTGATAAGAAAAGTC
* * *
8662210 CATTTATAGTCACTTATGCC-TCAAAAGCATTGTTACTCA-C
127 CATTTCTAGTCACTCATGCCTTCAAAAGCCTTGTTACTCAGC
* * * * * * **
8662250 TTTAAATTGTTTTGTAATCTTATAAATTATTATAAATCAAAATTTTTTCA-TTTTGTTTAAAATT
1 TTTAAATAGTTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTTTATTTTTGGTTAAAACA
* * * * * * *
8662314 GATCATAGTTAAATGTTTGCATTTTGGGAA-AACTGAAACAGAGGCCTTCCATTGAGAAGAAAAG
66 GATCATAATTGAATGTTTGCA--TT---AAGAACCG-AAGAGAAGCCATCCATTGATAAGAAAAG
* * * * * *
8662378 TTCATTTATAGTCACTCAAGCCATC-AAAGTCATGTTACTC-GC
125 TCCATTTCTAGTCACTCATGCCTTCAAAAGCCTTGTTACTCAGC
* * * * * * * ** *
8662420 TTTAAGT-GATTTTGTAACCTTACAAATGATTTTAAAT-TAAATGTTTTTCATTTCTAATTAAAG
1 TTTAAATAG-TTTTATAATCTTATAAATGATTTTAAATCAAAAT-TTTTTTATTTTTGGTTAAAA
* * * ** * * ** *
8662483 CATATCATAATTGGATGTTTGCATCAAGAAATGTGAAGCGAAAGCCATCTATTGGCAAGAAAAAT
64 CAGATCATAATTGAATGTTTGCATTAAG-AA-CCGAAGAG-AAGCCATCCATTGATAAGAAAAGT
* * *
8662548 TCATTTCTAGTCACTCATACCTTCAAAAGCCTTATTACTCA-C
126 CCATTTCTAGTCACTCATGCCTTCAAAAGCCTTGTTACTCAGC
* * * * * *
8662590 TTTAAATTGTTTTATAATCTTAAAAATTATTTTAAATCAAAATATTTTTGTTTTTGTTTAAAATC
1 TTTAAATAGTTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTTTATTTTTGGTTAAAA-C
* * * * ** * * * * * *
8662655 -GATCATAATTAAATGTTTCCATCAGGAAAAGTGAAGCGGATGCCTTTCATTGAGATGAAAAGTC
65 AGATCATAATTGAATGTTTGCATTA--AGAACCGAAG-AGAAGCCATCCATTGATAAGAAAAGTC
* * * *
8662719 CATTTATAGTCACTCCTACCATCGAAAA-CCTTGTTACTC-GC
127 CATTTCTAGTCACTCATGCCTTC-AAAAGCCTTGTTACTCAGC
* * * * ** ** * * *
8662760 TTTAACTGGTTTTATAATCTTGTAAATAATTTTAAAT-TGAATTTCTTGCATTTCTGATAAAAAC
1 TTTAAATAGTTTTATAATCTTATAAATGATTTTAAATCAAAATTT-TTTTATTTTTGGTTAAAAC
** * ** * * * *
8662824 TCA-CATAATTGAATGTTTACATCCGAGAAACATGAAGCAGATGCC-TACCATTGACAAGAAATG
65 AGATCATAATTGAATGTTTGCAT-TAAG-AAC-CGAAG-AGAAGCCAT-CCATTGATAAGAAAAG
* * *
8662887 TCCATTTATAGTCACTCATGGCTTCAAAAGCCTTATTACTCA-C
125 TCCATTTCTAGTCACTCATGCCTTCAAAAGCCTTGTTACTCAGC
* * * * *
8662930 TTTAAGTGGATTAATAAT-TCTATAAATGATTTTAAACCAAAATTTTTTTCATTTCTT-GTTAAA
1 TTTAAATAGTTTTATAATCT-TATAAATGATTTTAAATCAAAATTTTTTT-ATTT-TTGGTTAAA
* * * * * * * * * *
8662993 ACATATCATGATTGGATATTTGAAACT-AGAAACATGAAGCAAAAGCCATCCATTAACAAGAAAA
63 ACAGATCATAATTGAATGTTTG-CATTAAG-AAC-CGAAG-AGAAGCCATCCATTGATAAGAAAA
* * * * * *
8663057 GTCCATATATATTCACTCATACCTTCAAATGTCTTGTTACTCA-C
124 GTCCATTTCTAGTCACTCATGCCTTCAAAAGCCTTGTTACTCAGC
** * * * *
8663101 TTTAAAT-GATTAAATAATCTTATAATTGATTTAAAATCAAAA-TTTTTCACTTTTGGTTAAAAT
1 TTTAAATAG-TTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTTTATTTTTGGTTAAAA-
* * ** * * * * *
8663164 CA-ATCATAATTGGATGTTTTCATTGGGAAACATGAAGCAGATGACTTCCATTGAGAAGAAAAGT
64 CAGATCATAATTGAATGTTTGCATTAAG-AAC-CGAAG-AGAAGCCATCCATTGATAAGAAAAGT
* * * *
8663228 CCATGTAC-AGTCACTCTTG-CTACAGAAAACCTTGTTACTC-GC
126 CCAT-TTCTAGTCACTCATGCCTTCA-AAAGCCTTGTTACTCAGC
* * * * ** * ** ** *
8663270 TTTAACTTGTTTTATAATCTTACAAATTATTTTAAAT-TGAATATCTTGCATTTTTTATTAAAAT
1 TTTAAATAGTTTTATAATCTTATAAATGATTTTAAATCAAAAT-TTTTTTATTTTTGGTTAAAAC
* * * * * *
8663334 AGATCATAATTGGATGTTTGTATCAGGAAACGTGAAGAAGAAGCCATCCATTGACAAGAAAAGT
65 AGATCATAATTGAATGTTTGCATTAAG-AAC-CGAAG-AGAAGCCATCCATTGATAAGAAAAGT
8663398 GTGAAACCTC
Statistics
Matches: 4070, Mismatches: 1012, Indels: 547
0.72 0.18 0.10
Matches are distributed among these distances:
148 1 0.00
149 7 0.00
150 96 0.02
151 7 0.00
153 1 0.00
154 4 0.00
155 1 0.00
156 3 0.00
159 1 0.00
161 2 0.00
162 12 0.00
163 185 0.05
164 163 0.04
165 36 0.01
166 67 0.02
167 191 0.05
168 247 0.06
169 634 0.16
170 1070 0.26
171 1062 0.26
172 265 0.07
173 12 0.00
174 3 0.00
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (168 bp):
TTTAAATAGTTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTTTATTTTTGGTTAAAACA
GATCATAATTGAATGTTTGCATTAAGAACCGAAGAGAAGCCATCCATTGATAAGAAAAGTCCATT
TCTAGTCACTCATGCCTTCAAAAGCCTTGTTACTCAGC
Found at i:8659738 original size:844 final size:836
Alignment explanation
Indices: 8658336--8660833 Score: 1884
Period size: 848 Copynumber: 3.0 Consensus size: 836
8658326 GAGAAAAAAA
* * *
8658336 TCCATTTATAGTCACTCATGCCATTGAAAGCCTTGTCACTCACATTAAATAGTTTTATAATTTTA
1 TCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTCACTCACATTAAATAGGTTTATAATCTTA
* * *
8658401 TAATAACATAAAATCTTTTTTATTTTTGGTGAAAAACTCTCATAATTGGATTTTTACATTGACAA
66 TAATAACATAAAATATTTTTTATTTTTGGTGAAAAACTCTCATAATTGGATATTTACATCGACAA
*
8658466 ACAGATAGCGGATGCCATCCATTCATAACAAATGTCAATTTATAGTCATTAATGCCTTCAAAAGC
131 ACAGATAGCGGATGCCATCCATTCATAACAAATGTCAATTTATAGTAATTAATGCCTTCAAAAGC
** *
8658531 CTTATTACTCTCTTTAAGTGGTTTAATAATCTTATAAATGATTTTAAATTAAAAATTTTTTCATT
196 CTTATTACTAGCTTTAAGTAGTTTAATAATCTTATAAATGATTTTAAATTAAAAATTTTTTCATT
** * ** * **
8658596 TCTAATTTAAACATATCACAATTGGGTGTTTGCATGAGGAAATGTGAAGCAGAAGCCATCCATTG
261 TCTAATGAAAACAGATCACAATTGAATGTTTGCATGAGGAAACGCAAAGCAGAAGCCATCCATTG
* * * * * *
8658661 ACAAGAAACGTTCATTTATAGTCATTTATGGCTTCGAAAGCCTTGTTACTTGCTTTAAATGGTTA
326 ACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTAGTTACTTGCTTTAAATGGTTA
* * * *** * *
8658726 TATAATCTTATAACTGATTTCAATCAAAAAGTTTTCATTTTTGGTTACAATCGATCATAATTGGA
391 TATAATCTTATAAATGATTTAAACCAAAAAGTTTTCATTTTCAATTAAAATAGATCATAATTGGA
* ** * * * *
8658791 TGTTTTCATTGGAAATGTGAAGTAAATGCCATCCATTAAGAAGAATAGTCCATTTATAGTCACTC
456 TGTTTGCATAAGAAACGTGAAGTAAATGCCATCCACTAAGAAGAAAAGTCCATTTACAGTCACTC
* * * * * * ** * *
8658856 ATGCCATCGAAAGCCTTGTTAGTCGTTCTAATTAGTTTTATGATGTTATGAACGATTTTAAATCT
521 ATACCATCGAAAACCTTATTACTCGTTCTAAATAGTTTTATAACCTTATAAACGACTTTAAATC-
** * * **
8658921 AATTTTTTTTTTGTTTTTGGTTAAAATCA-ATCATAATTGGATGTTTACAT-TAGGAAATGTGAA
585 AA-AATTTTTTTATTTATGGTTAAAA-CATATCATAATTGGATGTTTACATCTA-GAAACATGAA
*
8658984 GCGGATA-CCATCCATTGACAAAAAAAGTCCATTTATAGTCACTCATGGCTTTGAAAGCCTTGTT
647 GCAGA-AGCCATCCATTGACAAAAAAAGTCCATTTATAGTCACTCATGGCTTTGAAAGCCTTGTT
8659048 ACTTACTCTAAGTGGTTTAGTAATCTTGTAAATGATTCTAAACTAAATCTTTTTTCATTTTTAGT
711 ACTTACTCTAAGTGGTTTAGTAATCTTGTAAATGATTCTAAACTAAATCTTTTTTCATTTTTAGT
8659113 TAAAATAGATCATGATTGGATGTTTGCATTGGTAAACGTGACCATCCTTTAAGAAGAAAGG
776 TAAAATAGATCATGATTGGATGTTTGCATTGGTAAACGTGACCATCCTTTAAGAAGAAAGG
* * * *
8659174 TCCATTTATAGTTAGTCATGCCATCGAAAGCCTTGTCGCTCACTTTAAA-AGGGTTTATAATCTT
1 TCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTCACTCACATTAAATA-GGTTTATAATCTT
* * * * * ** **
8659238 ATTAATGATTTTCAATCAAAATATTTTTTGTTTTTGTTTAAAATCTCTTGTAATTGGATATTTGT
65 A-TAAT-A---AC-AT-AAAATATTTTTTATTTTTGGTGAAAAACTCTCATAATTGGATATTTAC
* * * *
8659303 ATCGAGAAACATGA-AGCGGATAG-CATCCATTTACATGA-AAAT-TCTATTTATAGTAATTCAT
123 ATCGACAAACA-GATAGCGGAT-GCCATCCA-TT-CATAACAAATGTCAATTTATAGTAATTAAT
* * * *
8659364 GCCTTCAAAAGCCTTGTTACTAGCTTTAAGTAGTTTCATAATCTTATAAGTGA-TTTAAA-TCAA
184 GCCTTCAAAAGCCTTATTACTAGCTTTAAGTAGTTTAATAATCTTATAAATGATTTTAAATTAAA
* * ** * * * *
8659427 AATGTTTTTTATTTTTGGTGAAAACAGATCATAATTGAATGTTTGCGTTAGGAACCGCAAAG-AG
249 AAT-TTTTTCATTTCTAATGAAAACAGATCACAATTGAATGTTTGCATGAGGAAACGCAAAGCA-
** * *
8659491 GAAGCCATCCATTGTTAAGAAAAGTCCGTTTCTAG-CTACTCATGCCTTCGAAAGCCTAGTTACT
312 GAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTC-ACTCATGCCTTCGAAAGCCTAGTTACT
* * *
8659555 TGCTTTAAATGGTTTTATTATCTTATAAATGATTTTAAACCAAAATATTTTTCATTTTCAATTAA
376 TGCTTTAAATGGTTATATAATCTTATAAATGA-TTTAAACCAAAA-AGTTTTCATTTTCAATTAA
* * **
8659620 AATAGATCAT-A-TGGATGTTTGCATCAAGAAACGTGTAG-AGATGCCATCCACTGGGAAGAAAA
439 AATAGATCATAATTGGATGTTTGCAT-AAGAAACGTGAAGTAAATGCCATCCACTAAGAAGAAAA
8659682 GTCCATTTACAGTCACTCATACCATC-AAAACTCTTATTACTCAGTT-TAAATAGTTTTATAACC
503 GTCCATTTACAGTCACTCATACCATCGAAAAC-CTTATTACTC-GTTCTAAATAGTTTTATAACC
* *
8659745 TTATAAATGACTTTAAATCAAAATTTTTTTATTTATGGTTAAAACATATCATAATTGGATGTTTG
566 TTATAAACGACTTTAAATCAAAATTTTTTTATTTATGGTTAAAACATATCATAATTGGATGTTTA
* * * * * * *
8659810 CATCTATAAACATGAAGTAGAAGCCATCCATTGATAAGAAATGTCCATTTATAGTCAGTCATGTC
631 CATCTAGAAACATGAAGCAGAAGCCATCCATTGACAAAAAAAGTCCATTTATAGTCACTCATGGC
* * * ** * * * *
8659875 TTTGAAAGCCTTGTTACTCACTTTAAATTATTTTA-TAATCTTATAAATTATTTTAAATCAAAAT
696 TTTGAAAGCCTTGTTACTTACTCT-AAGTGGTTTAGTAATCTTGTAAATGATTCTAAA-CTAAAT
* * * * * ** *** * *
8659939 -ATTTTT-GTTTTT-GTTTAAAATTGATCATAACTAAATGTTTGCATCAATGAACATGAAGCGCA
759 CTTTTTTCATTTTTAG-TTAAAATAGATCATGATTGGATGTTTGCATTGGTAAACGTG-A-C-CA
** * *
8660001 GGTGTTCCAATGAGAAGAAAAG
820 -----TCCTTTAAGAAGAAAGG
* * * * * * * **
8660023 TTCATTTATAATCATTCATGCCATC-AAAG-TTGTGTTACTCTCTTTAGGT-GGTTTTATAATCT
1 TCCATTTATAGTCACTCATGCCATCGAAAGCCT-TGTCACTCACATTAAATAGG-TTTATAATCT
* * * * * * *
8660085 TATAAATGATTTTAAATTGAATTTTTTTTTATTTCTGGT-CAAAACATATCATAATTGGATATTT
64 TAT-AAT-A----ACA-TAAAATATTTTTTATTTTTGGTGAAAAAC-TCTCATAATTGGATATTT
* ** ** * * ** * * * * * * * * * *
8660149 GCATCGGGAAACCTAAAGCGGAAGCTGTTCATTGACAAGAAAAGCCCATTTATAGTCACTCATGC
121 ACATCGACAAACAGATAGCGGATGCCATCCATTCATAACAAATGTCAATTTATAGTAATTAATGC
* * * * * * * *
8660214 CTTCGAAAA-CCTTGTTACTCA-TTTTAAATTGTTTTATAATCTTATAAATTATTTGAAATCAAA
186 CTTC-AAAAGCCTTATTACT-AGCTTTAAGTAGTTTAATAATCTTATAAATGATTTTAAATTAAA
* * * * * * *
8660277 ATATTTTTGT--TTTGT--TTAAAATC-GATCATAATTAAATGTTTGAATCAAGAAACATG-AAA
249 A-ATTTTT-TCATTTCTAATGAAAA-CAGATCACAATTGAATGTTTGCATGAGGAAAC--GCAAA
* * * * * *
8660336 -CA-AAGGCCTTCTAATGAGAAGAAAAGTCAATTTATTA-TCACTCATGCCATCGAAAGCC-ATG
309 GCAGAA-GCCATCCATTGACAAGAAAAGTCCATTTA-TAGTCACTCATGCCTTCGAAAGCCTA-G
* * * * * ** ** **
8660397 TTACTCGCTTTAAGTGGTTTTATAATCTTTTAAATGATGCT--ACGTTAAATTTTTTCATTTTTG
371 TTACTTGCTTTAAATGGTTATATAATCTTATAAATGAT-TTAAAC-CAAAAAGTTTTCATTTTCA
* * * * * * * *
8660460 ATTAAAACATATCATAATTGGATGTTTGCATCACGAAACGTGAAGCAGAA-GCGATCCATTGACA
434 ATTAAAATAGATCATAATTGGATGTTTGCAT-AAGAAACGTGAAGTA-AATGCCATCCACTAAGA
* ** ** * ** * * * * * * * * *
8660524 ATAAAAGTTGATTTATGGTCATTGTTGCCTTCGAAAGCCTTATTACTCTTTTTAACTGGTTTAAG
497 AGAAAAGTCCATTTACAGTCACTCATACCATCGAAAACCTTATTACTCGTTCTAAATAGTTTTAT
* * * *
8660589 AACCTTATAAATGATTTTAAAT-AAAATTTTTTTCATCTT-TGGTTAAAACATATCACAATTGGG
562 AACCTTATAAACGACTTTAAATCAAAATTTTTTT-AT-TTATGGTTAAAACATATCATAATTGGA
* * * * *
8660652 TGTTTGCATC-AGGAAACATGAAGC-GAAAGCTATCCACTAATAAAAAAAGTCCATTTATAGTCA
625 TGTTTACATCTA-GAAACATGAAGCAG-AAGCCATCCATTGACAAAAAAAGTCCATTTATAGTCA
* * * * * * * * *
8660715 CTCATGGCTTCGAATGCCTTGTTACTTGCTTTAAATGGTTATA-TAATCTTATAACTTATTTTAA
688 CTCATGGCTTTGAAAGCCTTGTTACTTACTCTAAGTGGTT-TAGTAATCTTGTAAATGATTCTAA
* * * *
8660779 A-TCAAAACTTTTATCATTTTTAGTTAAAATAGATCATAATTGGATGTTTCCATTG
752 ACT-AAATCTTTTTTCATTTTTAGTTAAAATAGATCATGATTGGATGTTTGCATTG
8660834 AGAAACATGA
Statistics
Matches: 1322, Mismatches: 262, Indels: 141
0.77 0.15 0.08
Matches are distributed among these distances:
837 1 0.00
838 56 0.04
839 4 0.00
840 2 0.00
841 39 0.03
842 133 0.10
843 30 0.02
844 225 0.17
845 172 0.13
846 42 0.03
847 170 0.13
848 347 0.26
849 90 0.07
850 8 0.01
851 3 0.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (836 bp):
TCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTCACTCACATTAAATAGGTTTATAATCTTA
TAATAACATAAAATATTTTTTATTTTTGGTGAAAAACTCTCATAATTGGATATTTACATCGACAA
ACAGATAGCGGATGCCATCCATTCATAACAAATGTCAATTTATAGTAATTAATGCCTTCAAAAGC
CTTATTACTAGCTTTAAGTAGTTTAATAATCTTATAAATGATTTTAAATTAAAAATTTTTTCATT
TCTAATGAAAACAGATCACAATTGAATGTTTGCATGAGGAAACGCAAAGCAGAAGCCATCCATTG
ACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTAGTTACTTGCTTTAAATGGTTA
TATAATCTTATAAATGATTTAAACCAAAAAGTTTTCATTTTCAATTAAAATAGATCATAATTGGA
TGTTTGCATAAGAAACGTGAAGTAAATGCCATCCACTAAGAAGAAAAGTCCATTTACAGTCACTC
ATACCATCGAAAACCTTATTACTCGTTCTAAATAGTTTTATAACCTTATAAACGACTTTAAATCA
AAATTTTTTTATTTATGGTTAAAACATATCATAATTGGATGTTTACATCTAGAAACATGAAGCAG
AAGCCATCCATTGACAAAAAAAGTCCATTTATAGTCACTCATGGCTTTGAAAGCCTTGTTACTTA
CTCTAAGTGGTTTAGTAATCTTGTAAATGATTCTAAACTAAATCTTTTTTCATTTTTAGTTAAAA
TAGATCATGATTGGATGTTTGCATTGGTAAACGTGACCATCCTTTAAGAAGAAAGG
Found at i:8660191 original size:678 final size:676
Alignment explanation
Indices: 8657986--8663397 Score: 3534
Period size: 678 Copynumber: 8.0 Consensus size: 676
8657976 CAAACCATCT
* * * * * *
8657986 ATTGAGAACAAAAGTCCATTCATAGTCACTTATCCCATCAAAAGCCTTGTTACTTGTTTTCAA-T
1 ATTGAGAAGAAAAGTCCATTTATAGTCACTCATGCCATCAAAAGCCTTGTTACTCGCTTT-AAGT
* * ** * * * ** ****
8658050 GGTTTTCTAATCTTATAAATGATTTGAAATCAAAATCTTTTTCATTTTTGATTGTAATTCCTCAT
65 GGTTTTATAATCTTATAAATGATTTTAAAT-TGAATTTTTTTCATTTCTGGTTAAAACAGATCAT
* * * * * *
8658115 AATTGGAGGTTTG-AGTCGAGAAGCATGAAGCAGATGCCATCCATTGAC-AGTAAAAGTCCATTT
129 AATTGGATGTTTGCA-TTGGGAAACATAAAGCAGAAGCCATCCATTGACAAG-AAAAGTCCATTT
* * * *
8658178 ATAGTCACTCATGTCTTTC-AAAG-C---TTACT-AGCTTTAAATTGTCTTATAATCTTACAAAT
192 ATAGTCACTCATG-CCTTCAAAAGCCTAGTTACTCA-CTTTAAATGGTTTTATAATCTTATAAAT
* * * *
8658237 TATTTTCAATCAAAAT-CTTTTCATTTTTGTTTAAAATTA-ATCATAATTAAATGTTTGCATC-A
255 GATTTTAAATCAAAATATTTTTCA-TTTTGTTTAAAA-TAGATCATAATTGAATGTTTGCATCGA
* * * *
8658299 GGAAATC-TGAAGCTGATGCCATCCATTGAGAA-AAAAATCCATTTATAGTCACTCATGCCATTG
318 -GAAA-CGTGAAG-AGATGCCATCCATTGAGAAGAAAAGTCCATTTATAGTCACTCATACCA-TC
* * * * ** *
8658362 AAAGCCTTGTCACTCACATTAAAT-AGTTTTATAATTTTAT-AAT-A----ACAT-AAAATCTTT
379 AAAACCTTGTTACTCGCTTTAAATGA-TTTTATAACCTTATAAATGATTTTAAATCAAAAT-TTT
* * * * * * * * ** *
8658419 TTTATTTTTGGTGAAAA-ACTCTCATAATTGGATTTTTACATTGACAAACA-GATAGCGGATGCC
442 TTCATTTCTGGTTAAAACA-TATCATAATTGGATGTTTGCA-TCAGAAACATGA-AGTAGAAGCC
* * * * * * * * * *
8658482 ATCCATTCATAACAAATGTCAATTTATAGTCATTAATGCCTTCAAAAGCCTTATTACTCTCTTTA
504 ATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCACTTTA
* * * * * *
8658547 AGTGGTTTAATAATCTTATAAATGATTTTAAATTAAAA-ATTTTT-TCATTTCTAATTTAAACA-
569 AATTGTTTTATAATCTTATAAATTATTTTAAATCAAAATATTTTTGT--TTT-T-GTTTAAA-AT
* *** * ** **
8658609 TATCACAATTGGGTGTTTGCATGAGGAAATGTGAAGCAGAA-GCCATCC
629 TATCATAATTAAATGTTTGCATCAGGAAACATGAAGC-GAAGGCGTTCC
* * * * * * * * * *
8658657 ATTGACAAGAAACGTTCATTTATAGTCATTTATGGCTTCGAAAGCCTTGTTACTTGCTTTAAATG
1 ATTGAGAAGAAAAGTCCATTTATAGTCACTCATGCCATCAAAAGCCTTGTTACTCGCTTTAAGTG
* * * ** *** * *
8658722 GTTATATAATCTTATAACTGA-TTTCAATCAAAAAGTTTTCATTTTTGGTTACAATC-GATCATA
66 GTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTCATTTCTGGTTA-AAACAGATCATA
* ** * * * * *
8658785 ATTGGATGTTTTCATT-GGAAATGTGAAGTA-AATGCCATCCATTAAGAAGAATAGTCCATTTAT
130 ATTGGATGTTTGCATTGGGAAACATAAAGCAGAA-GCCATCCATTGACAAGAAAAGTCCATTTAT
* * * * * * * * * * *
8658848 AGTCACTCATGCCATCGAAAGCCTTGTTAGTC-GTTCTAATTAGTTTTATGATGTTATGAACGAT
194 AGTCACTCATGCCTTCAAAAGCCTAGTTACTCACTT-TAAATGGTTTTATAATCTTATAAATGAT
** * ** * * * *
8658912 TTTAAATCTAATTTTTTTTTTGTTTTTGGTTAAAATCA-ATCATAATTGGATGTTTACAT-TAGG
258 TTTAAATC-AA-AATATTTTTCATTTTGTTTAAAAT-AGATCATAATTGAATGTTTGCATCGA-G
* * * * * * ** *
8658975 AAATGTGAAGCGGATACCATCCATTGACAAAAAAAGTCCATTTATAGTCACTCATGGCTTTGAAA
319 AAACGTGAAG-AGATGCCATCCATTGAGAAGAAAAGTCCATTTATAGTCACTCAT-ACCATCAAA
* ** * * * * * * *
8659040 GCCTTGTTACTTACTCTAAGTG-GTTTAGTAATCTTGTAAATGATTCTAAA-CTAAATCTTTTTT
382 ACCTTGTTACTCGCTTTAAATGATTTTA-TAACCTTATAAATGATTTTAAATC-AAA-ATTTTTT
* * * * * **
8659103 CATTTTTAGTTAAAATAGATCATGATTGGATGTTTGCATTGGTAAAC-----GT-G-A-CCATCC
444 CATTTCTGGTTAAAACATATCATAATTGGATGTTTGCATCAG-AAACATGAAGTAGAAGCCATCC
* * * * * * * ** **
8659160 TTTAAGAAGAAAGGTCCATTTATAGTTAGTCATGCCATCGAAAGCCTTGTCGCTCACTTTAAAAG
508 ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCACTTTAAATT
* * * * * **
8659225 GGTTTATAATCTTATTAATGATTTTCAATCAAAATATTTTTTGTTTTTGTTTAAAATCTCTTGTA
573 GTTTTATAATCTTATAAATTATTTTAAATCAAAATA-TTTTTGTTTTTGTTTAAAAT-TATCATA
** * * *
8659290 ATTGGATATTTGTATC-GAGAAACATGAAGCGGATA-GC-ATCC
636 ATTAAATGTTTGCATCAG-GAAACATGAAGC-GA-AGGCGTTCC
* * * * * * * * * *
8659331 ATTTACATGAAAATTCTATTTATAGTAATTCATGCCTTCAAAAGCCTTGTTACTAGCTTTAAGTA
1 ATTGAGAAGAAAAGTCCATTTATAGTCACTCATGCCATCAAAAGCCTTGTTACTCGCTTTAAGTG
* * ** * *
8659396 GTTTCATAATCTTATAAGTGA-TTTAAATCAAAATGTTTTTT-ATTTTTGGTGAAAACAGATCAT
66 GTTTTATAATCTTATAAATGATTTTAAAT-TGAAT-TTTTTTCATTTCTGGTTAAAACAGATCAT
* * * * ** ** * *
8659459 AATTGAATGTTTGCGTTAGGAACCGCAAAG-AGGAAGCCATCCATTGTTAAGAAAAGTCCGTTTC
129 AATTGGATGTTTGCATTGGGAAACATAAAGCA-GAAGCCATCCATTGACAAGAAAAGTCCATTTA
* ** *
8659523 TAG-CTACTCATGCCTTCGAAAGCCTAGTTACTTGCTTTAAATGGTTTTATTATCTTATAAATGA
193 TAGTC-ACTCATGCCTTCAAAAGCCTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGA
* ** * *
8659587 TTTTAAACCAAAATATTTTTCATTTTCAATTAAAATAGATCAT-A-TGGATGTTTGCATCAAGAA
257 TTTTAAATCAAAATATTTTTCATTTT-GTTTAAAATAGATCATAATTGAATGTTTGCATCGAGAA
* * * *
8659650 ACGTGTAGAGATGCCATCCACTGGGAAGAAAAGTCCATTTACAGTCACTCATACCATCAAAACTC
321 ACGTGAAGAGATGCCATCCATTGAGAAGAAAAGTCCATTTATAGTCACTCATACCATCAAAAC-C
* * *
8659715 TTATTACTCAG-TTTAAAT-AGTTTTATAACCTTATAAATGACTTTAAATCAAAATTTTTTTATT
385 TTGTTACTC-GCTTTAAATGA-TTTTATAACCTTATAAATGATTTTAAATCAAAATTTTTTCATT
* *
8659778 TATGGTTAAAACATATCATAATTGGATGTTTGCATCTATAAACATGAAGTAGAAGCCATCCATTG
448 TCTGGTTAAAACATATCATAATTGGATGTTTGCATC-AGAAACATGAAGTAGAAGCCATCCATTG
* * * * * *
8659843 ATAAGAAATGTCCATTTATAGTCAGTCATGTCTTTGAAAGCCTTGTTACTCACTTTAAATTATTT
512 ACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCACTTTAAATTGTTT
*
8659908 TATAATCTTATAAATTATTTTAAATCAAAATATTTTTGTTTTTGTTTAAAATTGATCATAACTAA
577 TATAATCTTATAAATTATTTTAAATCAAAATATTTTTGTTTTTGTTTAAAATT-ATCATAATTAA
* * *
8659973 ATGTTTGCATCAATG-AACATGAAGCGCAGGTGTTCC
641 ATGTTTGCATC-AGGAAACATGAAGCGAAGGCGTTCC
* * * * * * *
8660009 AATGAGAAGAAAAGTTCATTTATAATCATTCATGCCATC-AAAG-TTGTGTTACTCTCTTTAGGT
1 ATTGAGAAGAAAAGTCCATTTATAGTCACTCATGCCATCAAAAGCCT-TGTTACTCGCTTTAAGT
* * *
8660072 GGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTTTATTTCTGGTCAAAACATATCAT
65 GGTTTTATAATCTTATAAATGATTTTAAATTGAA-TTTTTTTCATTTCTGGTTAAAACAGATCAT
* * * * ** * *
8660137 AATTGGATATTTGCATCGGGAAACCTAAAGCGGAAGCTGTTCATTGACAAGAAAAGCCCATTTAT
129 AATTGGATGTTTGCATTGGGAAACATAAAGCAGAAGCCATCCATTGACAAGAAAAGTCCATTTAT
* * * *
8660202 AGTCACTCATGCCTTCGAAAA-CCTTGTTACTCATTTTAAATTGTTTTATAATCTTATAAATTAT
194 AGTCACTCATGCCTTC-AAAAGCCTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGAT
* * * * * *
8660266 TTGAAATCAAAATATTTTT-GTTTTGTTTAAAATCGATCATAATTAAATGTTTGAATCAAGAAAC
258 TTTAAATCAAAATATTTTTCATTTTGTTTAAAATAGATCATAATTGAATGTTTGCATCGAGAAAC
* * * * * * * * * *
8660330 ATGAAACAAAGGCCTTCTAATGAGAAGAAAAGTCAATTTATTA-TCACTCATGCCATCGAAAGCC
323 GTG-AAGAGATGCCATCCATTGAGAAGAAAAGTCCATTTA-TAGTCACTCATACCATC-AAAACC
* * * * * ** ** * *
8660394 ATGTTACTCGCTTTAAGTGGTTTTATAATCTTTTAAATGATGCTACGT-TAAATTTTTTCATTTT
385 TTGTTACTCGCTTTAAATGATTTTATAACCTTATAAATGATTTTAAATCAAAATTTTTTCATTTC
* * * *
8660458 TGATTAAAACATATCATAATTGGATGTTTGCATCACGAAACGTGAAGCAGAAGCGATCCATTGAC
450 TGGTTAAAACATATCATAATTGGATGTTTGCATCA-GAAACATGAAGTAGAAGCCATCCATTGAC
* ** * * ** * ** * * *
8660523 AATAAAAGTTGATTTATGGTCATTGTTGCCTTCGAAAGCCTTATTACTCTTTTTAACTGGTTTAA
514 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCACTTTAAATTGTTTTA
* * * * * * * * * ***
8660588 GAACCTTATAAATGATTTTAAAT-AAAATTTTTTTCATCTTTGGTTAAAACATATCACAATTGGG
579 TAATCTTATAAATTATTTTAAATCAAAATATTTTT-GTTTTTGTTTAAAA-TTATCATAATTAAA
*
8660652 TGTTTGCATCAGGAAACATGAAGCGAAAGC-TATCC
642 TGTTTGCATCAGGAAACATGAAGCGAAGGCGT-TCC
* * * * * * * * * *
8660687 ACTAATAAAAAAAGTCCATTTATAGTCACTCATGGCTTCGAATGCCTTGTTACTTGCTTTAAATG
1 ATTGAGAAGAAAAGTCCATTTATAGTCACTCATGCCATCAAAAGCCTTGTTACTCGCTTTAAGTG
* * * ** * * * * *
8660752 GTTATATAATCTTATAACTTATTTTAAATCAAAACTTTTATCATTTTTAGTTAAAATAGATCATA
66 GTTTTATAATCTTATAAATGATTTTAAAT-TGAATTTTTTTCATTTCTGGTTAAAACAGATCATA
* * * * * * *
8660817 ATTGGATGTTTCCATTGAGAAACATGAAGTAGATGGCATCCATTGA-AGAGAAAAGTCCATTTAC
130 ATTGGATGTTTGCATTGGGAAACATAAAGCAGAAGCCATCCATTGACA-AGAAAAGTCCATTTAT
* * * * * * * ** *
8660881 AATCAC-CTATGCCATCGAAAGCCTTGTTAGTCATTTTAATTACTTTTATAATTTTATAAATGAT
194 AGTCACTC-ATGCCTTCAAAAGCCTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGAT
* ** * * * *
8660945 TTTAAATGAAAATAATTTTTGTTTTTGGTTAAAATTA-ATCATAATTGGATGTTTGCAAT-GGGG
258 TTTAAATCAAAAT-ATTTTTCATTTTGTTTAAAA-TAGATCATAATTGAATGTTTGC-ATCGAGA
* * ** *
8661008 AACGTGACGTAGATGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGGCTTCAAAAG
320 AACGTGAAG-AGATGCCATCCATTGAGAAGAAAAGTCCATTTATAGTCACTCATACCATCAAAA-
* * ** * * ** **
8661073 CCTTGTTACTCACTCTATGTGGTTTAATAAAGTTATAAATGATTTTAAATCAAAAGGTTTGCTCA
383 CCTTGTTACTCGCTTTAAATGATTTTATAACCTTATAAATGATTTTAAATCAAAA--TTTTTTCA
* * * * ** * ** *
8661138 TTTTTGGCTAAAAAAGATCATGGTTTGACATTTGCATCAGGAA-AT---GT-G-A-CCATCCATT
446 TTTCTGGTTAAAACATATCATAATTGGATGTTTGCATCAGAAACATGAAGTAGAAGCCATCCATT
* * * * * * * *
8661196 GAGAAGAAAAGTCCATTTATAGGCACTCAAGCCATT-GGAAGCCTTGTCACTCGCTTTAAATCGA
511 GACAAGAAAAGTCCATTTATAGTCACTCATGCC-TTCGAAAGCCTTGTTACTCACTTTAAATTGT
* * * * * *
8661260 TTTATAATCTTATAAATGATTTTCAATCAAAATATTTTTCATTGTTGCTTAAAATCTCTCATAAT
575 TTTATAATCTTATAAATTATTTTAAATCAAAATATTTTT-GTTTTTGTTTAAAAT-TATCATAAT
** * *
8661325 TGGATGTTTGCATC-GAGAAACATGAAACAAATGGCG-TCC
638 TAAATGTTTGCATCAG-GAAACATGAAGCGAA-GGCGTTCC
* * * * ** **
8661364 ATTGACATGAAAATTCCATTTATAGTTC-CTCAAGCTTTCAAAAGCCTTGTTACTTACTTTAAGT
1 ATTGAGAAGAAAAGTCCATTTATAG-TCACTCATGCCATCAAAAGCCTTGTTACTCGCTTTAAGT
* * * * * * **
8661428 GGTTTCATAATCTTATAAATAATTTGAAATAGAAATTTTATTCCATTTTTGGTTAAAATGGATCA
65 GGTTTTATAATCTTATAAATGATTTTAAATTG-AATTTT-TTTCATTTCTGGTTAAAACAGATCA
* * * * * *
8661493 TAATTGTATGTTTGTATTAGGAAACATGAAGCAGAAGCCATCCATAGAAAAGAAAAGTCCATTTA
128 TAATTGGATGTTTGCATTGGGAAACATAAAGCAGAAGCCATCCATTGACAAGAAAAGTCCATTTA
* *
8661558 TAGTCACTCATGCCTTCAAAAGTC-ATGTTACT--C--------G---------CTT-TAAATTA
193 TAGTCACTCATGCCTTCAAAAGCCTA-GTTACTCACTTTAAATGGTTTTATAATCTTATAAATGA
** * * * *
8661602 TTTTAAATCAAAATA-TTTTCATTTTTGTTTAAAATCTATCATAATTGAATATTTGTATTGGGAA
257 TTTTAAATCAAAATATTTTTCA-TTTTGTTTAAAATAGATCATAATTGAATGTTTGCATCGAGAA
* * * * * *
8661666 ACGTAAAGTGAATGCCATCCATTGAAAAGAAAAATCCATTTACAGTCACTCATGCCATCGAAAAC
321 ACGTGAAGAG-ATGCCATCCATTGAGAAGAAAAGTCCATTTATAGTCACTCATACCATC-AAAAC
** ** * ***
8661731 CTTGCAACTCGCTTTAAGCGATTTTATAACCTTATAAATGATTTTAAATTGATTTTTTTTTCATT
384 CTTGTTACTCGCTTTAAATGATTTTATAACCTTATAAATGATTTTAAA-TCAAAATTTTTTCATT
* * * * * * *
8661796 TCTAGTTAAAACAAAACATAATTAGATGTTTACATCAACAAACGTGAAGTAGAAGCCATCCATTG
448 TCTGGTTAAAACATATCATAATTGGATGTTTGCATC-AGAAACATGAAGTAGAAGCCATCCATTG
* * * ** * * * *
8661861 ATAGGAAAATTTTATTTACAGTCACTCATTCCTTTGAAAGCCTTGTTACTCGCTTTAAATTGTTT
512 ACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCACTTTAAATTGTTT
* *
8661926 TATAATCTTATAAATTATTTTAAATC-AAATATTTTTGTTTTT-ATT-AAATCGATCATAATTAA
577 TATAATCTTATAAATTATTTTAAATCAAAATATTTTTGTTTTTGTTTAAAAT-TATCATAATTAA
** * *
8661988 ATGTTTGCATTGGGAAACATGAAGCGAAGACCTTCC
641 ATGTTTGCATCAGGAAACATGAAGCGAAGGCGTTCC
* *
8662024 ATTGAGAAGAAAAGTCCATTTATAGTCACTCATGCCATCAAAAGCCGTATTACTCGCTTTAAGTG
1 ATTGAGAAGAAAAGTCCATTTATAGTCACTCATGCCATCAAAAGCCTTGTTACTCGCTTTAAGTG
* * * ** *
8662089 GTTTTATAACCTTATAAATGAATTTAAATTGAATTTTTTTAATTTCTAATTAAAACATATCATAA
66 GTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTCATTTCTGGTTAAAACAGATCATAA
* * * * *
8662154 TTGGATGTTTGCATTGGGTAACATAAAGTAAAAGCCATCCTTTGACAACAAAAGTCCATTTATAG
131 TTGGATGTTTGCATTGGGAAACATAAAGCAGAAGCCATCCATTGACAAGAAAAGTCCATTTATAG
* * * * * * *
8662219 TCACTTATGCC-TCAAAAGCATTGTTACTCACTTTAAATTGTTTTGTAATCTTATAAATTATTAT
196 TCACTCATGCCTTCAAAAGCCTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTT
* * * * *
8662283 AAATCAAAAT-TTTTTCATTTTGTTTAAAATTGATCATAGTTAAATGTTTGCATTTTGGGAAAAC
261 AAATCAAAATATTTTTCATTTTGTTTAAAATAGATCATAATTGAATGTTTGCA--TCGAG-AAAC
* * * * ** *
8662347 -TGAAACAGAGGCCTTCCATTGAGAAGAAAAGTTCATTTATAGTCACTCA-AGCCATCAAAGTCA
323 GTG-AAGAGATGCCATCCATTGAGAAGAAAAGTCCATTTATAGTCACTCATA-CCATCAAAACCT
* * * *
8662410 TGTTACTCGCTTTAAGTGATTTTGTAACCTTACAAATGATTTTAAAT-TAAATGTTTTTCATTTC
386 TGTTACTCGCTTTAAATGATTTTATAACCTTATAAATGATTTTAAATCAAAAT-TTTTTCATTTC
** * ** * * *
8662474 TAATTAAAGCATATCATAATTGGATGTTTGCATCAAGAAATGTGAAG-CGAAAGCCATCTATTGG
450 TGGTTAAAACATATCATAATTGGATGTTTGCATC-AGAAACATGAAGTAG-AAGCCATCCATTGA
* * * * * *
8662538 CAAGAAAAATTCATTTCTAGTCACTCATACCTTCAAAAGCCTTATTACTCACTTTAAATTGTTTT
513 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCACTTTAAATTGTTTT
* *
8662603 ATAATCTTAAAAATTATTTTAAATCAAAATATTTTTGTTTTTGTTTAAAATCGATCATAATTAAA
578 ATAATCTTATAAATTATTTTAAATCAAAATATTTTTGTTTTTGTTTAAAAT-TATCATAATTAAA
* * * * *
8662668 TGTTTCCATCAGGAAA-AGTGAAGCGGATGCCTTTC
642 TGTTTGCATCAGGAAACA-TGAAGCGAAGGCGTTCC
* * * *
8662703 ATTGAGATGAAAAGTCCATTTATAGTCACTCCTACCATCGAAAA-CCTTGTTACTCGCTTTAACT
1 ATTGAGAAGAAAAGTCCATTTATAGTCACTCATGCCATC-AAAAGCCTTGTTACTCGCTTTAAGT
* * * * * * **
8662767 GGTTTTATAATCTTGTAAATAATTTTAAATTGAATTTCTTGCATTTCTGATAAAAACTCA-CATA
65 GGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTCATTTCTGGTTAAAACAGATCATA
* * * * * * *
8662831 ATTGAATGTTTACATCCGAGAAACATGAAGCAGATGCC-TACCATTGACAAGAAATGTCCATTTA
130 ATTGGATGTTTGCAT-TGGGAAACATAAAGCAGAAGCCAT-CCATTGACAAGAAAAGTCCATTTA
* * * *
8662895 TAGTCACTCATGGCTTCAAAAGCCTTA-TTACTCACTTTAAGTGGATTAATAAT-TCTATAAATG
193 TAGTCACTCATGCCTTCAAAAGCC-TAGTTACTCACTTTAAATGGTTTTATAATCT-TATAAATG
* * * * * * * * * *
8662958 ATTTTAAACCAAAATTTTTTTCATTTCT-TGTTAAAACATATCATGATTGGATATTTGAAACTAG
256 ATTTTAAATCAAAATATTTTTCATTT-TGT-TTAAAATAGATCATAATTGAATGTTTGCATCGAG
* * * * * * * *
8663022 AAACATGAAGCAAAAGCCATCCATTAACAAGAAAAGTCCATATATATTCACTCATACCTTCAAAT
319 AAACGTGAAG-AGATGCCATCCATTGAGAAGAAAAGTCCATTTATAGTCACTCATACCATCAAA-
** * ** * * *
8663087 GTCTTGTTACTCACTTTAAATGATTAAATAATCTTATAATTGATTTAAAATCAAAA-TTTTTCAC
382 ACCTTGTTACTCGCTTTAAATGATTTTATAACCTTATAAATGATTTTAAATCAAAATTTTTTCA-
* ** * * * *
8663151 TTT-TGGTTAAAATCA-ATCATAATTGGATGTTTTCATTGGGAAACATGAAGCAGATGACTTCCA
446 TTTCTGGTTAAAA-CATATCATAATTGGATGTTTGCA-TCAGAAACATGAAGTAGAAGCCATCCA
* * * * * * * *
8663214 TTGAGAAGAAAAGTCCATGTACAGTCACTCTTG-CTACAGAAAACCTTGTTACTCGCTTTAACTT
509 TTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC-GAAAGCCTTGTTACTCACTTTAAATT
* ** * *
8663278 GTTTTATAATCTTACAAATTATTTTAAAT-TGAATA-TCTTGCATTTTT-TATTAAAATAGATCA
573 GTTTTATAATCTTATAAATTATTTTAAATCAAAATATTTTTG--TTTTTGT-TTAAAAT-TATCA
** * * * **
8663340 TAATTGGATGTTTGTATCAGGAAACGTGAAGAAGAA-GCCATCC
634 TAATTAAATGTTTGCATCAGGAAACATGAAG-CGAAGGCGTTCC
*
8663383 ATTGACAAGAAAAGT
1 ATTGAGAAGAAAAGT
8663398 GTGAAACCTC
Statistics
Matches: 3706, Mismatches: 843, Indels: 375
0.75 0.17 0.08
Matches are distributed among these distances:
656 40 0.01
657 136 0.04
658 110 0.03
659 13 0.00
660 116 0.03
661 5 0.00
662 5 0.00
663 13 0.00
664 83 0.02
667 5 0.00
668 48 0.01
669 36 0.01
670 9 0.00
671 120 0.03
672 102 0.03
673 36 0.01
674 270 0.07
675 113 0.03
676 368 0.10
677 301 0.08
678 629 0.17
679 563 0.15
680 298 0.08
681 175 0.05
682 71 0.02
683 5 0.00
684 36 0.01
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (676 bp):
ATTGAGAAGAAAAGTCCATTTATAGTCACTCATGCCATCAAAAGCCTTGTTACTCGCTTTAAGTG
GTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTCATTTCTGGTTAAAACAGATCATAA
TTGGATGTTTGCATTGGGAAACATAAAGCAGAAGCCATCCATTGACAAGAAAAGTCCATTTATAG
TCACTCATGCCTTCAAAAGCCTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTT
AAATCAAAATATTTTTCATTTTGTTTAAAATAGATCATAATTGAATGTTTGCATCGAGAAACGTG
AAGAGATGCCATCCATTGAGAAGAAAAGTCCATTTATAGTCACTCATACCATCAAAACCTTGTTA
CTCGCTTTAAATGATTTTATAACCTTATAAATGATTTTAAATCAAAATTTTTTCATTTCTGGTTA
AAACATATCATAATTGGATGTTTGCATCAGAAACATGAAGTAGAAGCCATCCATTGACAAGAAAA
GTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCACTTTAAATTGTTTTATAATCTT
ATAAATTATTTTAAATCAAAATATTTTTGTTTTTGTTTAAAATTATCATAATTAAATGTTTGCAT
CAGGAAACATGAAGCGAAGGCGTTCC
Found at i:8660949 original size:171 final size:169
Alignment explanation
Indices: 8657872--8661597 Score: 2183
Period size: 171 Copynumber: 22.0 Consensus size: 169
8657862 AAAAAGTTCA
* * * * * * * * *
8657872 TTTAAATGGTTTTGTAATCTTATAAATTATTTTCAATCGAATTGTTTTTCATTTCTAGTTAATAC
1 TTTAATTGGTTTTATAATCTTATAAATGATTTTAAATCAAAAT-TTTTTCATTT-TTGTTAAAAT
* * ** * * * * * * *
8657937 AGGTCATAATCGGACATATGCATTAAGAAACATGAAGAACAAACCATCTATTG-AGAACAAAAGT
64 AGATCATAATTGGATGTTTGCATTGAGAAACATGAAGCAGAAGCCATCCATTGAAG-AGAAAAGT
* * * * * ***
8658001 CCATTCATAGTCACTTATCCCATCAAAAGCCTTGTTACTTGT
128 CCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCAC
* * **
8658043 TTTCAA-TGGTTTTCTAATCTTATAAATGATTTGAAATCAAAATCTTTTTCATTTTTGATTGTAA
1 TTT-AATTGGTTTTATAATCTTATAAATGATTTTAAATCAAAAT-TTTTTCATTTTTG-TTAAAA
*** * * * * *
8658107 TTCCTCATAATTGGAGGTTTG-AGTCGAGAAGCATGAAGCAGATGCCATCCATTGACAG-TAAAA
63 TAGATCATAATTGGATGTTTGCA-TTGAGAAACATGAAGCAGAAGCCATCCATTGA-AGAGAAAA
*
8658170 GTCCATTTATAGTCACTCATGTCTTTC-AAAG-C---TTACT-AGC
126 GTCCATTTATAGTCACTCATG-CCTTCGAAAGCCTTGTTACTCA-C
* * * * *
8658210 TTTAAATT-GTCTTATAATCTTACAAATTATTTTCAATCAAAATCTTTTCATTTTTGTTTAAAAT
1 TTT-AATTGGTTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTTCATTTTTG-TTAAAA-
** * * * *
8658274 TA-ATCATAATTAAATGTTTGCA-TCAGGAAATC-TGAAGCTGATGCCATCCATTG-AGAAAAAA
63 TAGATCATAATTGGATGTTTGCATTGA-GAAA-CATGAAGCAGAAGCCATCCATTGAAGAGAAAA
* *
8658335 ATCCATTTATAGTCACTCATGCCATT-GAAAGCCTTGTCACTCAC
126 GTCCATTTATAGTCACTCATGCC-TTCGAAAGCCTTGTTACTCAC
* * * * * * *
8658379 ATTAAATAGTTTTATAATTTTAT-AAT-A----ACAT-AAAATCTTTTTTATTTTTGGTGAAAA-
1 TTTAATTGGTTTTATAATCTTATAAATGATTTTAAATCAAAAT-TTTTTCATTTTT-GTTAAAAT
** * * * * * * * *
8658436 ACTCTCATAATTGGATTTTTACATTGACAAACA-GATAGCGGATGCCATCCATTCATA-ACAAAT
64 A-GATCATAATTGGATGTTTGCATTGAGAAACATGA-AGCAGAAGCCATCCATTGA-AGAGAAAA
* * * * * *
8658499 GTCAATTTATAGTCATTAATGCCTTCAAAAGCCTTATTACTCTC
126 GTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCAC
* * * ** * *
8658543 TTTAAGTGGTTTAATAATCTTATAAATGATTTTAAATTAAAAATTTTTTCATTTCTAATTTAAAC
1 TTTAATTGGTTTTATAATCTTATAAATGATTTTAAA-TCAAAATTTTTTCATTT-TTGTTAAAAT
* * * ** *
8658608 ATATCACAATTGGGTGTTTGCA-TGAGGAAATGTGAAGCAGAAGCCATCCATTGACA-AGAAACG
64 AGATCATAATTGGATGTTTGCATTGA-GAAACATGAAGCAGAAGCCATCCATTGA-AGAGAAAAG
* * * * **
8658671 TTCATTTATAGTCATTTATGGCTTCGAAAGCCTTGTTACTTGC
127 TCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCAC
* * * * ** * *
8658714 TTTAAATGGTTATATAATCTTATAACTGA-TTTCAATCAAAAAGTTTTCATTTTTGGTTACAATC
1 TTTAATTGGTTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTTCATTTTT-GTTAAAATA
* ** * *
8658778 GATCATAATTGGATGTTTTCATTG-GAAATGTGAAGTA-AATGCCATCCATT-AAGAAGAATAGT
65 GATCATAATTGGATGTTTGCATTGAGAAACATGAAGCAGAA-GCCATCCATTGAAG-AGAAAAGT
* * *
8658840 CCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTAGTC-G
128 CCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCAC
* * * * * ** **
8658881 TTCTAATTAGTTTTATGATGTTATGAACGATTTTAAATCTAATTTTTTTTTTGTTTTTGGTTAAA
1 TT-TAATTGGTTTTATAATCTTATAAATGATTTTAAATC-AA-AATTTTTTCATTTTT-GTTAAA
* ** * *
8658946 ATCA-ATCATAATTGGATGTTTACATT-AGGAAATGTGAAGCGGATA-CCATCCATTGACA-AAA
62 AT-AGATCATAATTGGATGTTTGCATTGA-GAAACATGAAGCAGA-AGCCATCCATTGA-AGAGA
* * *
8659007 AAAGTCCATTTATAGTCACTCATGGCTTTGAAAGCCTTGTTACTTAC
123 AAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCAC
* * * * *
8659054 TCTAAGTGG-TTTAGTAATCTTGTAAATGATTCTAAA-CTAAATCTTTTTTCATTTTTAGTTAAA
1 TTTAATTGGTTTTA-TAATCTTATAAATGATTTTAAATC-AAA-ATTTTTTCATTTTT-GTTAAA
* * *
8659117 ATAGATCATGATTGGATGTTTGCATTG-GTAAAC-----G-TG-A-CCATCC-TTTAAGAAGAAA
62 ATAGATCATAATTGGATGTTTGCATTGAG-AAACATGAAGCAGAAGCCATCCATTGAAG-AGAAA
* * * * **
8659172 GGTCCATTTATAGTTAGTCATGCCATCGAAAGCCTTGTCGCTCAC
125 AGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCAC
** * * * **
8659217 TTTAAAAGGGTTTATAATCTTATTAATGATTTTCAATCAAAATATTTTTTGTTTTTGTTTAAAAT
1 TTTAATTGGTTTTATAATCTTATAAATGATTTTAAATCAAAAT-TTTTTCATTTTTG-TTAAAAT
*** ** * * * * * * *
8659282 CTCTTGTAATTGGATATTTGTATCGAGAAACATGAAGCGGATAG-CATCCATTTACA-TGAAAAT
64 AGATCATAATTGGATGTTTGCATTGAGAAACATGAAGCAGA-AGCCATCCATTGA-AGAGAAAAG
* * * *
8659345 TCTATTTATAGTAATTCATGCCTTCAAAAGCCTTGTTACT-AGC
127 TCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCA-C
* * * * * * *
8659388 TTTAAGTAGTTTCATAATCTTATAAGTGA-TTTAAATCAAAATGTTTTTTATTTTTGGTGAAAAC
1 TTTAATTGGTTTTATAATCTTATAAATGATTTTAAATCAAAAT-TTTTTCATTTTT-GTTAAAAT
* * * * *
8659452 AGATCATAATTGAATGTTTGCGTT-AGGAAC-CGCAAAG-AGGAAGCCATCCATTGTTA-AGAAA
64 AGATCATAATTGGATGTTTGCATTGAGAAACATG--AAGCA-GAAGCCATCCATTG-AAGAGAAA
* * * **
8659513 AGTCCGTTTCTAG-CTACTCATGCCTTCGAAAGCCTAGTTACTTGC
125 AGTCCATTTATAGTC-ACTCATGCCTTCGAAAGCCTTGTTACTCAC
* * * **
8659558 TTTAAATGGTTTTATTATCTTATAAATGATTTTAAACCAAAATATTTTTCATTTTCAATTAAAAT
1 TTTAATTGGTTTTATAATCTTATAAATGATTTTAAATCAAAAT-TTTTTCATTTT-TGTTAAAAT
** * * * * *
8659623 AGATCAT-A-TGGATGTTTGCATCAAGAAACGTGTAG-AGATGCCATCCACTG-GGAAGAAAAGT
64 AGATCATAATTGGATGTTTGCATTGAGAAACATGAAGCAGAAGCCATCCATTGAAG-AGAAAAGT
* * * * * *
8659684 CCATTTACAGTCACTCATACCATC-AAAACTCTTATTACTCAG
128 CCATTTATAGTCACTCATGCCTTCGAAAGC-CTTGTTACTCAC
* * * * * * *
8659726 TTTAAATAGTTTTATAACCTTATAAATGACTTTAAATCAAAATTTTTTTATTTATGGTTAAAACA
1 TTTAATTGGTTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTTCATTT-TTGTTAAAATA
* * * *
8659791 TATCATAATTGGATGTTTGCATCT-ATAAACATGAAGTAGAAGCCATCCATTGATA-AGAAATGT
65 GATCATAATTGGATGTTTGCAT-TGAGAAACATGAAGCAGAAGCCATCCATTGA-AGAGAAAAGT
* * *
8659854 CCATTTATAGTCAGTCATGTCTTTGAAAGCCTTGTTACTCAC
128 CCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCAC
* * *
8659896 TTTAAATT-ATTTTATAATCTTATAAATTATTTTAAATCAAAATATTTTT-GTTTTTGTTTAAAA
1 TTT-AATTGGTTTTATAATCTTATAAATGATTTTAAATCAAAAT-TTTTTCATTTTTG-TTAAAA
* * ** ** * *** *
8659959 TTGATCATAACTAAATGTTTGCATCAATG-AACATGAAGC-GCAGGTGTTCCAATG-AGAAGAAA
63 TAGATCATAATTGGATGTTTGCATTGA-GAAACATGAAGCAG-AAGCCATCCATTGAAG-AGAAA
* * * * * *
8660021 AGTTCATTTATAATCATTCATGCCATC-AAAG-TTGTGTTACTCTC
125 AGTCCATTTATAGTCACTCATGCCTTCGAAAGCCT-TGTTACTCAC
** * ** * * * *
8660065 TTTAGGTGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTTTATTTCTGGTCAAAAC
1 TTTAATTGGTTTTATAATCTTATAAATGATTTTAAA-TCAAAATTTTTTCATTT-TTGTTAAAAT
* * * * * * * ** * *
8660130 ATATCATAATTGGATATTTGCATCGGGAAACCTAAAGCGGAAGCTGTTCATTGACA-AGAAAAGC
64 AGATCATAATTGGATGTTTGCATTGAGAAACATGAAGCAGAAGCCATCCATTGA-AGAGAAAAGT
* *
8660194 CCATTTATAGTCACTCATGCCTTCGAAAACCTTGTTACTCAT
128 CCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCAC
* * *
8660236 TTTAAATT-GTTTTATAATCTTATAAATTATTTGAAATCAAAATATTTTT--GTTTTGTTTAAAA
1 TTT-AATTGGTTTTATAATCTTATAAATGATTTTAAATCAAAAT-TTTTTCATTTTTG-TTAAAA
* ** * ** * * * *
8660298 TCGATCATAATTAAATGTTTGAATCAAGAAACATGAAACA-AAGGCCTTCTAATG-AGAAGAAAA
63 TAGATCATAATTGGATGTTTGCATTGAGAAACATGAAGCAGAA-GCCATCCATTGAAG-AGAAAA
* * * *
8660361 GTCAATTTATTA-TCACTCATGCCATCGAAAGCCATGTTACTCGC
126 GTCCATTTA-TAGTCACTCATGCCTTCGAAAGCCTTGTTACTCAC
* * ** ** * *
8660405 TTTAAGTGGTTTTATAATCTTTTAAATGATGCTACGT-TAAATTTTTTCATTTTTGATTAAAACA
1 TTTAATTGGTTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTTCATTTTTG-TTAAAATA
* * * * *
8660469 TATCATAATTGGATGTTTGCA-TCACGAAACGTGAAGCAGAAGCGATCCATTGACA-ATAAAAGT
65 GATCATAATTGGATGTTTGCATTGA-GAAACATGAAGCAGAAGCCATCCATTGA-AGAGAAAAGT
** * * ** * **
8660532 TGATTTATGGTCATTGTTGCCTTCGAAAGCCTTATTACTCTT
128 CCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCAC
* * * * * *
8660574 TTTAACTGGTTTAAGAACCTTATAAATGATTTTAAAT-AAAATTTTTTTCATCTTTGGTTAAAAC
1 TTTAATTGGTTTTATAATCTTATAAATGATTTTAAATCAAAA-TTTTTTCAT-TTTTGTTAAAAT
* * * * * * * *
8660638 ATATCACAATTGGGTGTTTGCA-TCAGGAAACATGAAGC-GAAAGCTATCCACT-AATAAAAAAA
64 AGATCATAATTGGATGTTTGCATTGA-GAAACATGAAGCAG-AAGCCATCCATTGAA-GAGAAAA
* * **
8660700 GTCCATTTATAGTCACTCATGGCTTCGAATGCCTTGTTACTTGC
126 GTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCAC
* * * * *
8660744 TTTAAATGGTTATATAATCTTATAACTTATTTTAAATCAAAACTTTTATCATTTTTAGTTAAAAT
1 TTTAATTGGTTTTATAATCTTATAAATGATTTTAAATCAAAA-TTTTTTCATTTTT-GTTAAAAT
* * * *
8660809 AGATCATAATTGGATGTTTCCATTGAGAAACATGAAGTAGATGGCATCCATTGAAGAGAAAAGTC
64 AGATCATAATTGGATGTTTGCATTGAGAAACATGAAGCAGAAGCCATCCATTGAAGAGAAAAGTC
* * * * *
8660874 CATTTACAATCAC-CTATGCCATCGAAAGCCTTGTTAGTCAT
129 CATTTATAGTCACTC-ATGCCTTCGAAAGCCTTGTTACTCAC
** * * *
8660915 TTTAATTACTTTTATAATTTTATAAATGATTTTAAATGAAAATAATTTTT-GTTTTTGGTTAAAA
1 TTTAATTGGTTTTATAATCTTATAAATGATTTTAAATCAAAAT--TTTTTCATTTTT-GTTAAAA
* * * * * * *
8660979 TTA-ATCATAATTGGATGTTTGCAATGGGGAACGTGACGTAGATGCCATCCATTGATA-AGAAAA
63 -TAGATCATAATTGGATGTTTGCATTGAGAAACATGAAGCAGAAGCCATCCATTGA-AGAGAAAA
* *
8661042 GTCCATTTATAGTCACTCATGGCTTCAAAAGCCTTGTTACTCAC
126 GTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCAC
* * ** ** *
8661086 TCT-ATGTGGTTTAATAAAGTTATAAATGATTTTAAATCAAAAGGTTTGCTCATTTTTGGCTAAA
1 TTTAAT-TGGTTTTATAATCTTATAAATGATTTTAAATCAAAA--TTTTTTCATTTTT-GTTAAA
* ** * ** * * *
8661150 AAAGATCATGGTTTGACATTTGCA-TCAGGAA-AT---G-TG-A-CCATCCATTG-AGAAGAAAA
62 ATAGATCATAATTGGATGTTTGCATTGAGAAACATGAAGCAGAAGCCATCCATTGAAG-AGAAAA
* * * * *
8661206 GTCCATTTATAGGCACTCAAGCCATT-GGAAGCCTTGTCACTCGC
126 GTCCATTTATAGTCACTCATGCC-TTCGAAAGCCTTGTTACTCAC
* * * * *
8661250 TTTAAATCGATTTATAATCTTATAAATGATTTTCAATCAAAATATTTTTCATTGTTGCTTAAAAT
1 TTTAATTGGTTTTATAATCTTATAAATGATTTTAAATCAAAAT-TTTTTCATTTTTG-TTAAAAT
*** * * * * * *
8661315 CTCTCATAATTGGATGTTTGCATCGAGAAACATGAAACA-AATGGCGTCCATTGACA-TGAAAAT
64 AGATCATAATTGGATGTTTGCATTGAGAAACATGAAGCAGAA-GCCATCCATTGA-AGAGAAAAG
* * * *
8661378 TCCATTTATAGTTC-CTCAAGCTTTCAAAAGCCTTGTTACTTAC
127 TCCATTTATAG-TCACTCATGCCTTCGAAAGCCTTGTTACTCAC
* * * *
8661421 TTTAAGTGGTTTCATAATCTTATAAATAATTTGAAAT-AGAAATTTTATTCCATTTTTGGTTAAA
1 TTTAATTGGTTTTATAATCTTATAAATGATTTTAAATCA-AAATTTT-TT-CATTTTT-GTTAAA
* * * * *
8661485 ATGGATCATAATTGTATGTTTGTATT-AGGAAACATGAAGCAGAAGCCATCCATAGAAAAGAAAA
62 ATAGATCATAATTGGATGTTTGCATTGA-GAAACATGAAGCAGAAGCCATCCATTGAAGAGAAAA
* * * *
8661549 GTCCATTTATAGTCACTCATGCCTTCAAAAGTCATGTTACTCGC
126 GTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCAC
8661593 TTTAA
1 TTTAA
8661598 ATTATTTTAA
Statistics
Matches: 2715, Mismatches: 650, Indels: 379
0.73 0.17 0.10
Matches are distributed among these distances:
161 2 0.00
162 16 0.01
163 192 0.07
164 153 0.06
165 41 0.02
166 58 0.02
167 80 0.03
168 192 0.07
169 378 0.14
170 519 0.19
171 830 0.31
172 241 0.09
173 11 0.00
174 2 0.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (169 bp):
TTTAATTGGTTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTTCATTTTTGTTAAAATAG
ATCATAATTGGATGTTTGCATTGAGAAACATGAAGCAGAAGCCATCCATTGAAGAGAAAAGTCCA
TTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCAC
Found at i:8661742 original size:150 final size:150
Alignment explanation
Indices: 8661471--8661747 Score: 369
Period size: 150 Copynumber: 1.8 Consensus size: 150
8661461 AATTTTATTC
* * * *
8661471 CATTTTTGGTTAAAATGGATCATAATTGTATGTTTGTATTAGGAAACATGAAGCAGAAGCCATCC
1 CATTTTTGGTTAAAATCGATCATAATTGAATATTTGTATTAGGAAACATAAAGCAGAAGCCATCC
* * * * **
8661536 ATAGAAAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGTCATGTTACTCGCTTTAAATT
66 ATAGAAAAGAAAAATCCATTTACAGTCACTCATGCCATCAAAAGCCATGCAACTCGCTTTAAATT
8661601 ATTTTAAATCAAAATATTTT
131 ATTTTAAATCAAAATATTTT
* * * * *
8661621 CATTTTTGTTTAAAATCTATCATAATTGAATATTTGTATTGGGAAACGTAAAG-TGAATGCCATC
1 CATTTTTGGTTAAAATCGATCATAATTGAATATTTGTATTAGGAAACATAAAGCAGAA-GCCATC
* *
8661685 CATTGAAAAGAAAAATCCATTTACAGTCACTCATGCCATCGAAAA-CCTTGCAACTCGCTTTAA
65 CATAGAAAAGAAAAATCCATTTACAGTCACTCATGCCATC-AAAAGCCATGCAACTCGCTTTAA
8661748 GCGATTTTAT
Statistics
Matches: 108, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
149 3 0.03
150 101 0.94
151 4 0.04
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (150 bp):
CATTTTTGGTTAAAATCGATCATAATTGAATATTTGTATTAGGAAACATAAAGCAGAAGCCATCC
ATAGAAAAGAAAAATCCATTTACAGTCACTCATGCCATCAAAAGCCATGCAACTCGCTTTAAATT
ATTTTAAATCAAAATATTTT
Found at i:8664801 original size:39 final size:37
Alignment explanation
Indices: 8664753--8664838 Score: 104
Period size: 35 Copynumber: 2.3 Consensus size: 37
8664743 AGTGGTGTGC
* *
8664753 TGTGTGAGTGCACACATTGATGATATATGCCATGTGCAA
1 TGTGGGAGTGCACACA-TGATGATAT-TGCCATGTACAA
* *
8664792 TGTGGGAGTG--CACATGATGATATTGCCTTGTACAG
1 TGTGGGAGTGCACACATGATGATATTGCCATGTACAA
8664827 TGTGGGAGTGCA
1 TGTGGGAGTGCA
8664839 TAGGATGATT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
35 19 0.46
36 9 0.22
37 4 0.10
39 9 0.22
ACGTcount: A:0.24, C:0.14, G:0.31, T:0.30
Consensus pattern (37 bp):
TGTGGGAGTGCACACATGATGATATTGCCATGTACAA
Found at i:8664835 original size:35 final size:36
Alignment explanation
Indices: 8664765--8664847 Score: 105
Period size: 35 Copynumber: 2.3 Consensus size: 36
8664755 TGTGAGTGCA
*
8664765 CACATTGATGATATATGCCATGTGCAATGTGGGAGTG
1 CACA-TGATGATATATGCCATGTACAATGTGGGAGTG
* *
8664802 CACATGATGATAT-TGCCTTGTACAGTGTGGGAGTG
1 CACATGATGATATATGCCATGTACAATGTGGGAGTG
* *
8664837 CATAGGATGAT
1 CACATGATGAT
8664848 TCTAGCTATG
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
35 28 0.68
36 9 0.22
37 4 0.10
ACGTcount: A:0.27, C:0.13, G:0.30, T:0.30
Consensus pattern (36 bp):
CACATGATGATATATGCCATGTACAATGTGGGAGTG
Found at i:8670574 original size:111 final size:110
Alignment explanation
Indices: 8670404--8670619 Score: 387
Period size: 111 Copynumber: 2.0 Consensus size: 110
8670394 AACAAGTTGG
8670404 CTTTGTCTTCCTCCAATCCTTTATGCAATCCTTTTACTCTTTTGACACTGAGATAAAGTCCATAA
1 CTTTGTCTTCCTCCAATCCTTTATGCAATCCTTTTACTCTTTTGACACTGAGATAAAGTCCATAA
** *
8670469 TAGTCTAGAAATACTTGGGTTCATGAAAACTTAAAAATTTCGATC
66 TAGTCTAGAAATACTCAGGTTCACGAAAACTTAAAAATTTCGATC
8670514 CNTTTGTCTTCCTCCAATCCTTTATGCAATCCTTTTACTCTTTTGACACTGAGATAAAGTCCATA
1 C-TTTGTCTTCCTCCAATCCTTTATGCAATCCTTTTACTCTTTTGACACTGAGATAAAGTCCATA
*
8670579 ATAGTCTATAAATACTCAGGTTCACGAAAACTTAAAAATTT
65 ATAGTCTAGAAATACTCAGGTTCACGAAAACTTAAAAATTT
8670620 TGACTCGAGA
Statistics
Matches: 101, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
110 1 0.01
111 100 0.99
ACGTcount: A:0.31, C:0.21, G:0.11, T:0.37
Consensus pattern (110 bp):
CTTTGTCTTCCTCCAATCCTTTATGCAATCCTTTTACTCTTTTGACACTGAGATAAAGTCCATAA
TAGTCTAGAAATACTCAGGTTCACGAAAACTTAAAAATTTCGATC
Found at i:8673042 original size:2 final size:2
Alignment explanation
Indices: 8673035--8673073 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
8673025 ATTGTGTTGG
* *
8673035 TA TA TA TA TA TA TA TA TA TA TA TT TA TA TT TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8673074 GTTGTGCATG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (2 bp):
TA
Found at i:8674909 original size:170 final size:170
Alignment explanation
Indices: 8674573--8675675 Score: 814
Period size: 170 Copynumber: 6.5 Consensus size: 170
8674563 GAAAAACTCA
* * * *
8674573 CATAATTGGATGTTTGCATA-TGAGAAACTTGAAGCAGATGCC-TACCATTGACAAGAAATGTCC
1 CATAATTGGATGTTTGCA-ACT-AGAAACATGAAGTAGAAGCCAT-CCATTGACAAGAAAAGTCC
* * * ** * *
8674636 ATTTATAGTCACTCATGGCTTTGAAAGCATTGCTACTCACTTTAAGGGGATTAATAATCCTATAA
63 ATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTCACTTTAAATGGTTTAATAATCTTATAA
* *
8674701 ATGATTGTAAATCAAAATATTTTTCATTTCTTGTTAAAACATAT
128 ATGATTTTAAATCAAAATATTTTTCATTT-TGGTTAAAACATAT
* * * * * *
8674745 CATGATTGGATATTTACAACTAGAAACATAAAGTAGAAGCCATCCATT-ACAAGAAAAGTCTATA
1 CATAATTGGATGTTTGCAACTAGAAACATGAAGTAGAAGCCATCCATTGACAAGAAAAGTCCATT
* * * * * *
8674809 TATATTCACTCATGCCTTTGAAAGTCTTATTACTCACTCTAAATGGTTCAATAATCTTATAACTG
66 TATAGTCACTCATGCCTTTGAAAGCCTTGTTACTCACTTTAAATGGTTTAATAATCTTATAAATG
* *
8674874 ATTTTAAATCAAAATTTTTTTCACTTTTGGTTAAAATC-GAT
131 ATTTTAAATCAAAATATTTTTCA-TTTTGGTTAAAA-CATAT
* * * * * * * * *
8674915 CATAATTGGATGTTT-CCAGTAAGAAACGTGAAGTGGATGCCTTCCATTGAGAAGAATAGTCTAT
1 CATAATTGGATGTTTGCAACT-AGAAACATGAAGTAGAAGCCATCCATTGACAAGAAAAGTCCAT
** * * ** * * *
8674979 TTATAGTCACTCATG-CTATCAAAAACCTTGTGACTTGCTTTAACTAGTTTTATAATCTTATAAA
65 TTATAGTCACTCATGCCT-TTGAAAGCCTTGTTACTCACTTTAAATGGTTTAATAATCTTATAAA
** * * * * *
8675043 TGATTTTAAAT-TGAATCTCTTGCATTTTTGATT-AAACAGAT
129 TGATTTTAAATCAAAATATTTTTCA-TTTTGGTTAAAACATAT
* * * * * *
8675084 CATTATTAGATGTTTGCATTAC-A-AAACGTGAAGTAGAAGCCATCCATTGATAAGAGAGGTCCA
1 CATAATTGGATGTTTGCA--ACTAGAAACATGAAGTAGAAGCCATCCATTGACAAGAAAAGTCCA
* * * * * *
8675147 TTTATAGTCACTCATGCCTTCT-AAACCCTTGCTAGTCACTTTAGATTGTTTTATAATCTTATAA
64 TTTATAGTCACTCATGCCTT-TGAAAGCCTTGTTACTCACTTTAAATGGTTTAATAATCTTATAA
* * * * ** **
8675211 ATTATTTTAAATAAAAACATTGTTGTTTTTATTTAAAATCA-AT
128 ATGATTTTAAATCAAAATATTTTTCATTTTGGTTAAAA-CATAT
* ** * * * * ** * * * *
8675254 CATAACTAAATGTTTGCATCAATAAACATGTAGCGGATGCCATTCATTGAGAAGAAAAATCCATT
1 CATAATTGGATGTTTGCAACTAGAAACATGAAGTAGAAGCCATCCATTGACAAGAAAAGTCCATT
* * * * * * * * *
8675319 TATATTCATTGATGCCATTGAAAGCCTTGTCACTCACGTTAAATGCTTTTATAATGTTATAAATG
66 TATAGTCACTCATGCCTTTGAAAGCCTTGTTACTCACTTTAAATGGTTTAATAATCTTATAAATG
* * ** *
8675384 ATTTTAAATTAAAATCTTTTTTGTTTTGGGTGAAAA-ACTCA-
131 ATTTTAAATCAAAATATTTTTCATTTT-GGTTAAAACA-T-AT
* * * * * * *
8675425 CATAATAGGATGTTTTCATCCGAGCAACATGAAGTAGATGCC-TACCATTGACAAGAAATGTCCA
1 CATAATTGGATGTTTGCA-ACTAGAAACATGAAGTAGAAGCCAT-CCATTGACAAGAAAAGTCCA
** * * * * * *
8675489 TTTATAGTCACTCATGGGTTCGAAAAGCCTCGTTACTCACTTGAAGTGGATTAATAATCCTATAA
64 TTTATAGTCACTCATGCCTTTG-AAAGCCTTGTTACTCACTTTAAATGGTTTAATAATCTTATAA
*
8675554 ATGATTTTAAATCAAAATATTTTTCATTTCTTGTTAAAACATAT
128 ATGATTTTAAATCAAAATATTTTTCATTT-TGGTTAAAACATAT
* * * * * *
8675598 CATGATTGGATATTTGTAACTAGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATA
1 CATAATTGGATGTTTGCAACTAGAAACATGAAGTAGAAGCCATCCATTGACAAGAAAAGTCCATT
* *
8675663 TATATTTACTCAT
66 TATAGTCACTCAT
8675676 ACCTCAAAAT
Statistics
Matches: 715, Mismatches: 186, Indels: 60
0.74 0.19 0.06
Matches are distributed among these distances:
168 2 0.00
169 124 0.17
170 278 0.39
171 116 0.16
172 115 0.16
173 78 0.11
174 2 0.00
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36
Consensus pattern (170 bp):
CATAATTGGATGTTTGCAACTAGAAACATGAAGTAGAAGCCATCCATTGACAAGAAAAGTCCATT
TATAGTCACTCATGCCTTTGAAAGCCTTGTTACTCACTTTAAATGGTTTAATAATCTTATAAATG
ATTTTAAATCAAAATATTTTTCATTTTGGTTAAAACATAT
Found at i:8676318 original size:168 final size:166
Alignment explanation
Indices: 8675750--8677313 Score: 933
Period size: 169 Copynumber: 9.2 Consensus size: 166
8675740 TGAGCGACTA
* * * * *
8675750 CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTTATGCCATCGAAAGACTTATTACTCACTG
1 CCATCAATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTCACTT
* * * *
8675815 TAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAACTGTTTTTGTTTTTGGTTAAAATCA
66 TAAAT-GCTTTATAATCTTATAAATGATTTTAAAT-AAAAATTTTTTTG-CTTTGGTTAAAAT-A
* * * * *
8675880 ATAATAACTGTATATTTGCATTGA-AAAACGTGAAACGAATG
127 ATCATAATTGAATGTTT-CATTGAGAAAA-GTGAAACGAAAG
* * ** *
8675921 CCATCAATTGACAAGAAAAGTCCATTTATAGTCACTCATGTCTTTAAAAGCCTTGTTGCT-AGCT
1 CCATCAATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTCA-CT
* * * * *
8675985 TTAAATGGTTTAATAATCTTATAAATGATTTGAAAT-TAAATTTTTTT-CATTTTTTGTTAAAAC
65 TTAAATGCTTT-ATAATCTTATAAATGATTTTAAATAAAAATTTTTTTGC---TTTGGTTAAAAT
* *
8676048 ATATCATAATTGAATGTTTGCA-TGGGAAACA-TGAAGCGAAAG
126 A-ATCATAATTGAATGTTT-CATTGAGAAA-AGTGAAACGAAAG
* * * * * *
8676090 CCATCCATTGGCAAGAAAAGTCCATTTATATTCACTCATACCTTCGAAAGCCTTGTTACTCGCTT
1 CCATCAATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTCACTT
* *
8676155 TAAATAGCTTTATAATCTTATAAATGATGTCAAATAAAAATATTTTTTGCTTTGGTTAAAATAGA
66 TAAAT-GCTTTATAATCTTATAAATGATTTTAAATAAAAAT-TTTTTTGCTTTGGTTAAAATA-A
* *
8676220 TCATAATTGGATGTTT-ATTGAGAAAAGTGAAACAAAAG
128 TCATAATTGAATGTTTCATTGAGAAAAGTGAAACGAAAG
* * * * *
8676258 CCATCAATTGAGAAGAAAAGTTCATTTATAGTTACTCTTGCCAACGAAAGCCTTGTTACTCACTT
1 CCATCAATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTCACTT
* ** * *
8676323 TAAATGACTTTATAATCTTATAGATGATTTTAAATCAAAATATTTTTCATT--TTTCATTGACAT
66 TAAATG-CTTTATAATCTTATAAATGATTTTAAAT-AAAA-ATTTTT--TTGCTTTGGTTAAAAT
* * * * * *
8676386 AAATAATTATTGGATCTTTACATCT-A-AAAACGTGAAGC-AATG
126 -AATCATAATTGAATGTTT-CAT-TGAGAAAA-GTGAAACGAAAG
** * * * * * * * * *
8676428 TGATCCATTGACGAGAAAAGTCCATATATTGTCACTCATGTCTTCGAAGGCCTTATTACACTA-T
1 CCATCAATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTC-ACT
* * * * ***
8676492 TTTATTGGTTTTATAATCTTATAAATGATTGTAAATCAAAAATTTTTTCATTTCTGGTTAAACAT
65 TTAAAT-GCTTTATAATCTTATAAATGATTTTAAAT-AAAAATTTTTTTGCTT-TGGTTAAA-AT
*
8676557 -ATCATAATTGAATGTTTGC-TT-AGGAAACA-TGAAGCGAAAG
126 AATCATAATTGAATGTTT-CATTGA-GAAA-AGTGAAACGAAAG
* * * * *
8676597 CCATCCATTGTCAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAATGCCTTGTCATA-T-GC
1 CCATCAATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGT--TACTCAC
* * * *
8676660 TTTAAGTGGTTTAATAATCTT-TAAATGATTTTAAATCAAAATTTTATT-CATTTATGGTTAGAA
64 TTTAAATGCTTT-ATAATCTTATAAATGATTTTAAATAAAAATTTTTTTGC--TT-TGGTTA-AA
* * *
8676723 CAT-ATCATAATTGGATGTTTGCATCGA-TAAA-TGCAAA-GCAGAAG
124 -ATAATCATAATTGAATGTTT-CATTGAGAAAAGTG-AAACG-A-AAG
* * * * * * * * *
8676767 CCATCCATTGATAGGAAATGTCCTTTTATGGTCACTTATGCCTTCGAAAGCCTTGTTACTTACTT
1 CCATCAATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTCACTT
* * * * * *
8676832 TAAGTGGTTTTATAAGCTTATAAATAATTTTCAATTAAAATATTTTTCATT--TTTGTTTAAAAT
66 TAAAT-GCTTTATAATCTTATAAATGATTTT-AAATAAAA-ATTTTT--TTGCTTTGGTTAAAA-
* * **
8676895 TGATCATAATTGGATGTTTGCATT-AGGAAACA-TGAAGTGAATA-
125 TAATCATAATTGAATGTTT-CATTGA-GAAA-AGTGAAACGAA-AG
* * * * * *
8676938 CCATCCATTGAGAAGAAAAGTCTATTTATAGTCACTCATGCCATCGAAATCTTTGTCACTCACTT
1 CCATCAATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTCACTT
* * * *
8677003 TAAATGGATTTATAATCTTATAAATGATTTTAAAT-CAAATTCCTTTTTGTTTTTGCTTAAAAT-
66 TAAAT-GCTTTATAATCTTATAAATGATTTTAAATAAAAATT--TTTTTG-CTTTGGTTAAAATA
* * * * * *
8677066 CTCTTGTAATT-AGATGTTTGCATCGACAAACA-TGAAGC-AGATG
127 ATC--ATAATTGA-ATGTTT-CATTGAGAAA-AGTGAAACGA-AAG
* * * * *
8677109 TCATCCATTGACAAGAAAAGCCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCAC-A
1 CCATCAATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTCACTT
* * * * **
8677173 TAAAGTGGTTAATAATCCTATAAATGATTTTGAATTGAAATGTTTTCATT--TTTGGTTAAACCA
66 TAAA-TGCTTTATAATCTTATAAATGATTTTAAATAAAAAT-TTTT--TTGCTTTGGTTAAA--A
* * *
8677236 T-AGCATAATTCG-ATGTTTCCATTGGGAAACA-TGAAGCGAAAG
125 TAATCATAATT-GAATGTTT-CATTGAGAAA-AGTGAAACGAAAG
* * * * *
8677278 CAATCCATTGACAAGAAAAGTCTATTTTTATTCACT
1 CCATCAATTGACAAGAAAAGTCCATTTATAGTCACT
8677314 AATATTTTAA
Statistics
Matches: 1112, Mismatches: 198, Indels: 168
0.75 0.13 0.11
Matches are distributed among these distances:
167 15 0.01
168 143 0.13
169 348 0.31
170 249 0.22
171 326 0.29
172 20 0.02
173 9 0.01
175 2 0.00
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.37
Consensus pattern (166 bp):
CCATCAATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTCACTT
TAAATGCTTTATAATCTTATAAATGATTTTAAATAAAAATTTTTTTGCTTTGGTTAAAATAATCA
TAATTGAATGTTTCATTGAGAAAAGTGAAACGAAAG
Found at i:8676946 original size:171 final size:169
Alignment explanation
Indices: 8675679--8677313 Score: 1392
Period size: 171 Copynumber: 9.6 Consensus size: 169
8675669 TACTCATACC
** * * * *
8675679 TCAAAATATTTTTCATTTTTTATTAAAATCGATCATAATTGGATG-TTCCATTGCAAAACGTTG-
1 TCAAAATATTTTTCATTTTTGGTTAAAAT-TATCATAATTGGATGTTTGCATTG-GAAAC-ATGA
* * * * *
8675742 AGCGACTACCATCCATTGACAAGAAAAGTCCATTTATAGTCACTTATGCCATCGAAAGACTTATT
63 AGCGAATACCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTT
*
8675807 ACTCACTGTAAATGGTTTTATAATCTTATAAATGATTTTAAA
128 ACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAA
* * * * * * * * *
8675849 TCAAAACTGTTTTT-GTTTTTGGTTAAAATCAATAATAACTGTATATTTGCATTGAAAAACGTGA
1 TCAAAA-TATTTTTCATTTTTGGTTAAAAT-TATCATAATTGGATGTTTGCATTG-GAAACATGA
* * * * **
8675913 AACGAATGCCATCAATTGACAAGAAAAGTCCATTTATAGTCACTCATGTCTTTAAAAGCCTTGTT
63 AGCGAATACCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTT
* * *
8675978 GCT-AGCTTTAAATGGTTTAATAATCTTATAAATGATTTGAAA
128 ACTCA-CTTTAAATGGTTTTATAATCTTATAAATGATTTTAAA
* * * * * *
8676020 T-TAAATTTTTTTCATTTTTTGTTAAAACATATCATAATTGAATGTTTGCATGGGAAACATGAAG
1 TCAAAATATTTTTCATTTTTGGTTAAAA-TTATCATAATTGGATGTTTGCATTGGAAACATGAAG
* * *
8676084 CGAA-AGCCATCCATTGGCAAGAAAAGTCCATTTATATTCACTCATACCTTCGAAAGCCTTGTTA
65 CGAATA-CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTA
* * * * *
8676148 CTCGCTTTAAATAGCTTTATAATCTTATAAATGATGTCAAA
129 CTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAA
* * *
8676189 TAAAAATATTTTT--TGCTTTGGTTAAAATAGATCATAATTGGATGTTT--ATTGAGAAA-AGTG
1 TCAAAATATTTTTCAT-TTTTGGTTAAAAT-TATCATAATTGGATGTTTGCATTG-GAAACA-TG
* * * * * * * **
8676249 AAAC-AAAAGCCATCAATTGAGAAGAAAAGTTCATTTATAGTTACTCTTGCCAACGAAAGCCTTG
62 AAGCGAATA-CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTG
** *
8676313 TTACTCACTTTAAATGACTTTATAATCTTATAGATGATTTTAAA
126 TTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAA
** * * * * * * * ** *
8676357 TCAAAATATTTTTCATTTTTCATTGACATAAATAATTATTGGATCTTTACATCTAAAAACGTGAA
1 TCAAAATATTTTTCATTTTTGGTTAAAAT-TATCATAATTGGATGTTTGCAT-TGGAAACATGAA
*** * * * * * *
8676422 GC-AATGTGATCCATTGACGAGAAAAGTCCATATATTGTCACTCATGTCTTCGAAGGCCTTATTA
64 GCGAATACCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTA
* * * *
8676486 CACTA-TTTTATTGGTTTTATAATCTTATAAATGATTGTAAA
129 CTC-ACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAA
* *
8676527 TCAAAA-ATTTTTTCATTTCTGGTTAAACA-TATCATAATTGAATGTTTGC-TTAGGAAACATGA
1 TCAAAATA-TTTTTCATTTTTGGTTAAA-ATTATCATAATTGGATGTTTGCATT-GGAAACATGA
* *
8676589 AGCGAA-AGCCATCCATTGTCAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAATGCCTTGT
63 AGCGAATA-CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGT
* * *
8676653 CATA-T-GCTTTAAGTGGTTTAATAATCTT-TAAATGATTTTAAA
127 --TACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAA
* *
8676695 TCAAAAT-TTTATTCATTTATGGTTAGAACA-TATCATAATTGGATGTTTGCA-TCGATAA-ATG
1 TCAAAATATTT-TTCATTTTTGGTTA-AA-ATTATCATAATTGGATGTTTGCATTGGA-AACATG
* * * * * * *
8676756 CAAAGCAGAA-GCCATCCATTGATAGGAAATGTCCTTTTATGGTCACTTATGCCTTCGAAAGCCT
62 --AAGC-GAATACCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCT
* * * * *
8676820 TGTTACTTACTTTAAGTGGTTTTATAAGCTTATAAATAATTTTCAA
124 TGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAA
* *
8676866 TTAAAATATTTTTCATTTTTGTTTAAAATTGATCATAATTGGATGTTTGCATTAGGAAACATGAA
1 TCAAAATATTTTTCATTTTTGGTTAAAATT-ATCATAATTGGATGTTTGCATT-GGAAACATGAA
* * * * * * *
8676931 GTGAATACCATCCATTGAGAAGAAAAGTCTATTTATAGTCACTCATGCCATCGAAATCTTTGTCA
64 GCGAATACCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTA
*
8676996 CTCACTTTAAATGGATTTATAATCTTATAAATGATTTTAAA
129 CTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAA
* * * * * ** * * *
8677037 TCAAATTCCTTTTT-GTTTTTGCTTAAAATCTCTTGTAATTAGATGTTTGCATCGACAAACATGA
1 TCAAAAT-ATTTTTCATTTTTGGTTAAAAT-TATCATAATTGGATGTTTGCATTG-GAAACATGA
** *
8677101 AGC-AGATGTCATCCATTGACAAGAAAAGCCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGT
63 AGCGA-ATACCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGT
* * * *
8677165 TACTCAC-ATAAAGTGG-TTAATAATCCTATAAATGATTTTGAA
127 TACTCACTTTAAA-TGGTTTTATAATCTTATAAATGATTTTAAA
** * * * *
8677207 TTGAAAT-GTTTTCATTTTTGGTTAAACCA-TAGCATAATTCGATGTTTCCATTGGGAAACATGA
1 TCAAAATATTTTTCATTTTTGGTTAAA--ATTATCATAATTGGATGTTTGCATT-GGAAACATGA
* * * *
8677270 AGCGAA-AGCAATCCATTGACAAGAAAAGTCTATTTTTATTCACT
63 AGCGAATA-CCATCCATTGACAAGAAAAGTCCATTTATAGTCACT
8677314 AATATTTTAA
Statistics
Matches: 1172, Mismatches: 235, Indels: 117
0.77 0.15 0.08
Matches are distributed among these distances:
167 10 0.01
168 161 0.14
169 331 0.28
170 283 0.24
171 369 0.31
172 13 0.01
173 5 0.00
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.37
Consensus pattern (169 bp):
TCAAAATATTTTTCATTTTTGGTTAAAATTATCATAATTGGATGTTTGCATTGGAAACATGAAGC
GAATACCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACT
CACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAA
Found at i:8678063 original size:170 final size:171
Alignment explanation
Indices: 8677886--8678193 Score: 372
Period size: 170 Copynumber: 1.8 Consensus size: 171
8677876 TTGGATGTTG
* * * * * *
8677886 CATCAGGAAACATGAAGC-AAATGCTATCCATTGAGAAGAAAAGTTCATTTATAGTCACTAATGC
1 CATCAGGAAACATGAAACGAAA-GCCATCCATTAACAAAAAAAGTCCATTTATAGTCACTAATGC
* * * * *
8677950 CATCGAAAGCTTTG-TCACTTGCTTTTAATGGATT-TATAATCTTATAAATGATTTTAAAT-CAA
65 CATCGAAACCCTTGCT-ACGTGCTCTAAATGG-TTGTATAATCTTATAAATGATTTTAAATCCAA
**
8678012 ATTTTTTTCATATTTACGTAAAATAGATCATAACTAGATTAGTA
128 ATAGTTTTCATATTTACGTAAAATAGATCATAACTAGATTAGTA
* * * *
8678056 CATCAGGAAACGTGAAACGAAAGCCATCTATTAACAAAAAAAGTCCATTTATATTCACTCATGCC
1 CATCAGGAAACATGAAACGAAAGCCATCCATTAACAAAAAAAGTCCATTTATAGTCACTAATGCC
* ***
8678121 GTCGAAACCCTTGCTACGTGCTCTAAATGGTTGTATAATCTTATGGCTGATTTTAAATCCAAATA
66 ATCGAAACCCTTGCTACGTGCTCTAAATGGTTGTATAATCTTATAAATGATTTTAAATCCAAATA
8678186 GTTTTCAT
131 GTTTTCAT
8678194 TTTTGGTTAA
Statistics
Matches: 113, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
169 2 0.02
170 95 0.84
171 16 0.14
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.34
Consensus pattern (171 bp):
CATCAGGAAACATGAAACGAAAGCCATCCATTAACAAAAAAAGTCCATTTATAGTCACTAATGCC
ATCGAAACCCTTGCTACGTGCTCTAAATGGTTGTATAATCTTATAAATGATTTTAAATCCAAATA
GTTTTCATATTTACGTAAAATAGATCATAACTAGATTAGTA
Found at i:8679616 original size:5 final size:5
Alignment explanation
Indices: 8679606--8679650 Score: 58
Period size: 5 Copynumber: 9.2 Consensus size: 5
8679596 TTTAAAAAGG
*
8679606 AAGAA AAGAAA AAGAA AAG-A GAGAA AAGAA AA-AA AAGAA AAGAA A
1 AAGAA AAG-AA AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA A
8679651 CATACAAGGA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
4 7 0.20
5 23 0.66
6 5 0.14
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (5 bp):
AAGAA
Found at i:8679632 original size:14 final size:14
Alignment explanation
Indices: 8679609--8679650 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
8679599 AAAAAGGAAG
8679609 AAAAGAAAAAGAAAA
1 AAAAG-AAAAGAAAA
* *
8679624 GAGAGAAAAGAAAA
1 AAAAGAAAAGAAAA
8679638 AAAAGAAAAGAAA
1 AAAAGAAAAGAAA
8679651 CATACAAGGA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
14 20 0.87
15 3 0.13
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (14 bp):
AAAAGAAAAGAAAA
Found at i:8680963 original size:36 final size:35
Alignment explanation
Indices: 8680916--8681036 Score: 111
Period size: 36 Copynumber: 3.4 Consensus size: 35
8680906 GCTCACCAGC
*
8680916 TCATGTGCACTCACACACCGCACATAGTT-GAA-ATCA
1 TCATGTGCACTC-CACACCGCACAT--TTCGAATACCA
*
8680952 TCATGTGCACTCCTACACCGCACATTTCTAATACCA
1 TCATGTGCACTCC-ACACCGCACATTTCGAATACCA
* ** * *
8680988 TCAAGTGCACTCCCACACCGCACATGGCAAATATCA
1 TCATGTGCACT-CCACACCGCACATTTCGAATACCA
*
8681024 TCATGTACACTCC
1 TCATGTGCACTCC
8681037 TGCACCACAT
Statistics
Matches: 72, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
34 2 0.03
35 5 0.07
36 63 0.88
37 2 0.03
ACGTcount: A:0.31, C:0.35, G:0.12, T:0.23
Consensus pattern (35 bp):
TCATGTGCACTCCACACCGCACATTTCGAATACCA
Found at i:8683146 original size:11 final size:11
Alignment explanation
Indices: 8683127--8683172 Score: 67
Period size: 11 Copynumber: 4.3 Consensus size: 11
8683117 ATGGCTGGCA
8683127 AAAGGAAGAAC
1 AAAGGAAGAAC
* *
8683138 AAAGCAAGAAT
1 AAAGGAAGAAC
8683149 AAAGGAAGAA-
1 AAAGGAAGAAC
8683159 AAAGGAAGAAC
1 AAAGGAAGAAC
8683170 AAA
1 AAA
8683173 ACCCTAGGTG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
10 10 0.32
11 21 0.68
ACGTcount: A:0.67, C:0.07, G:0.24, T:0.02
Consensus pattern (11 bp):
AAAGGAAGAAC
Found at i:8683225 original size:20 final size:21
Alignment explanation
Indices: 8683183--8683225 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
8683173 ACCCTAGGTG
* *
8683183 GAAAATTCAAGGGAACAGTGT
1 GAAAATTCAAGGAAACAGAGT
8683204 GAAAATTCAAGGAAACA-AGT
1 GAAAATTCAAGGAAACAGAGT
8683224 GA
1 GA
8683226 CAAAAGGTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.49, C:0.09, G:0.26, T:0.16
Consensus pattern (21 bp):
GAAAATTCAAGGAAACAGAGT
Found at i:8683230 original size:22 final size:21
Alignment explanation
Indices: 8683184--8683230 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
8683174 CCCTAGGTGG
* **
8683184 AAAATTCAAGGGAACAGTGTG
1 AAAATTCAAGGAAACAGTGAC
8683205 AAAATTCAAGGAAACAAGTGAC
1 AAAATTCAAGGAAAC-AGTGAC
8683227 AAAA
1 AAAA
8683231 GGTAAGATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.53, C:0.11, G:0.21, T:0.15
Consensus pattern (21 bp):
AAAATTCAAGGAAACAGTGAC
Found at i:8685572 original size:11 final size:11
Alignment explanation
Indices: 8685556--8685583 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
8685546 AGCTTTTAGG
8685556 TTTAAAGTTGT
1 TTTAAAGTTGT
8685567 TTTAAAGTTGT
1 TTTAAAGTTGT
8685578 TTTAAA
1 TTTAAA
8685584 ATTTACAGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.14, T:0.54
Consensus pattern (11 bp):
TTTAAAGTTGT
Found at i:8690221 original size:11 final size:11
Alignment explanation
Indices: 8690201--8690246 Score: 76
Period size: 11 Copynumber: 4.3 Consensus size: 11
8690191 TATGGCCGGC
8690201 CAAAGGAAGAA
1 CAAAGGAAGAA
*
8690212 CAAAGCAAGAA
1 CAAAGGAAGAA
8690223 CAAAGGAAGAA
1 CAAAGGAAGAA
8690234 -AAAGGAAGAA
1 CAAAGGAAGAA
8690244 CAA
1 CAA
8690247 NNNNNNNNNN
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
10 10 0.31
11 22 0.69
ACGTcount: A:0.65, C:0.11, G:0.24, T:0.00
Consensus pattern (11 bp):
CAAAGGAAGAA
Found at i:8690229 original size:22 final size:21
Alignment explanation
Indices: 8690201--8690246 Score: 74
Period size: 21 Copynumber: 2.1 Consensus size: 21
8690191 TATGGCCGGC
8690201 CAAAGGAAGAACAAAGCAAGAA
1 CAAAGGAAGAA-AAAGCAAGAA
*
8690223 CAAAGGAAGAAAAAGGAAGAA
1 CAAAGGAAGAAAAAGCAAGAA
8690244 CAA
1 CAA
8690247 NNNNNNNNNN
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 12 0.52
22 11 0.48
ACGTcount: A:0.65, C:0.11, G:0.24, T:0.00
Consensus pattern (21 bp):
CAAAGGAAGAAAAAGCAAGAA
Found at i:8698371 original size:22 final size:22
Alignment explanation
Indices: 8698343--8698385 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
8698333 AGTTAGAAGA
*
8698343 ATTCTTGTTACAACGAAAATCC
1 ATTCTTGCTACAACGAAAATCC
* *
8698365 ATTCTTGCTGCAATGAAAATC
1 ATTCTTGCTACAACGAAAATC
8698386 AATTTGAAAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.33
Consensus pattern (22 bp):
ATTCTTGCTACAACGAAAATCC
Found at i:8698546 original size:36 final size:35
Alignment explanation
Indices: 8698499--8698619 Score: 136
Period size: 36 Copynumber: 3.4 Consensus size: 35
8698489 ACTTACCAGC
8698499 TCATGTGCACTCCCACACTGCACATAGCTGAAATCA
1 TCATGTGCACTCCCACACTGCACATAGCT-AAATCA
* * *
8698535 TCATGTGCACTCTCACA-TCGCACGTAGCTAATACCA
1 TCATGTGCACTCCCACACT-GCACATAGCTAA-ATCA
* * *
8698571 TCATGTGCACTCCCACACTGCATATGGCAAAAATCA
1 TCATGTGCACTCCCACACTGCACATAGC-TAAATCA
*
8698607 TCATGTACACTCC
1 TCATGTGCACTCC
8698620 TGCACCACAT
Statistics
Matches: 71, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
35 3 0.04
36 65 0.92
37 3 0.04
ACGTcount: A:0.30, C:0.33, G:0.13, T:0.24
Consensus pattern (35 bp):
TCATGTGCACTCCCACACTGCACATAGCTAAATCA
Found at i:8704492 original size:21 final size:19
Alignment explanation
Indices: 8704445--8704511 Score: 64
Period size: 20 Copynumber: 3.3 Consensus size: 19
8704435 TTCGAAACCT
8704445 TCTAAAAATATAATTTATA
1 TCTAAAAATATAATTTATA
**
8704464 AATGAAAAATATACATTTCATA
1 TCT-AAAAATATA-ATTT-ATA
8704486 TCTAAAAATA-AATTTAGGTA
1 TCTAAAAATATAATTTA--TA
8704506 TCTAAA
1 TCTAAA
8704512 TCATCCATTT
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
18 1 0.03
19 5 0.13
20 18 0.46
21 11 0.28
22 4 0.10
ACGTcount: A:0.52, C:0.07, G:0.04, T:0.36
Consensus pattern (19 bp):
TCTAAAAATATAATTTATA
Found at i:8723823 original size:24 final size:25
Alignment explanation
Indices: 8723767--8723824 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
8723757 GCCACAGTTT
*
8723767 ATGATTATACATGGCCAGGCCAAGAA
1 ATGA-TATACATGGCCAGGCCAACAA
* *
8723793 ATGATATACGTGGCTAGGCC-ACAA
1 ATGATATACATGGCCAGGCCAACAA
8723817 ATGATATA
1 ATGATATA
8723825 TGCGGCTGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 11 0.38
25 14 0.48
26 4 0.14
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.22
Consensus pattern (25 bp):
ATGATATACATGGCCAGGCCAACAA
Found at i:8725099 original size:171 final size:169
Alignment explanation
Indices: 8724839--8725843 Score: 843
Period size: 171 Copynumber: 5.9 Consensus size: 169
8724829 AGTGGTTTTT
* ** * *** * *
8724839 TAATCATATAAATGATTTTAAATTGAATTGTTTTTCAGTTTTAACTAAAA-CAGATCATGATTGG
1 TAATCTTATAAATGATTTTAAATCAAATT-TTTTTCATTTTTGGTTAAAATC-CATCATAATTGG
* * * * * * *
8724903 ATATTTGCATTAGGAAACGTGAAGCAAAAGTCATCCATTGAAAAGAAAAGTCCATTTCTAGTCTC
64 ATGTTTGCATCAGGAAACATGAAGCAGAAGCCATCCATTGAAAAGAAAAGTCCATTTATAGTCAC
*
8724968 TCATCCCATCGAAAGCCTTGTTACTTGCTTTTAATGGATTTA
129 TCATGCCATCGAAAGCCTTGTTACTTGCTTTTAAT-GATTTA
* * *
8725010 TAATCTTACAAATGATTTTAAATTAAACTTTTTTTCATTTTTGGTTAAAATCCCTCATAATTGGA
1 TAATCTTATAAATGATTTTAAATCAAA-TTTTTTTCATTTTTGGTTAAAATCCATCATAATTGGA
* * *
8725075 TGTTTACATCAGGAAACATGAAGCAGATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACT
65 TGTTTGCATCAGGAAACATGAAGCAGAAGCCATCCATTGAAAAGAAAAGTCCATTTATAGTCACT
* * * * *
8725140 AATCCCATCGAAAGTCTTGTTACTTACTTTAAATGATTTTA
130 CATGCCATCGAAAGCCTTGTTACTTGCTTTTAATGA-TTTA
* * *
8725181 TAATCTTATAAATGATTTTAAATCAAATTTCTTTTCATTTTTAGTTAAATTTCATCATAATTGGA
1 TAATCTTATAAATGATTTTAAATCAAATTT-TTTTCATTTTTGGTTAAAATCCATCATAATTGGA
* * * * *
8725246 GGTTTGCATC-GAGAAACATGAAGTAGATGCCATCCATTGATAAGAAAAGTCAATTTATAGTCAC
65 TGTTTGCATCAG-GAAACATGAAGCAGAAGCCATCCATTGAAAAGAAAAGTCCATTTATAGTCAC
* * ** *
8725310 TAATGCCTTCGAAAGTATTGTTACTTGC-TTTAAGTGGTTTAA
129 TCATGCCATCGAAAGCCTTGTTACTTGCTTTTAA-TGATTT-A
* * * *
8725352 CAAT-TTAATAAACGATTTTAAATCAAATTCTTTTTTCATTTCTT-CTTCAAACAT--GTCATAA
1 TAATCTT-ATAAATGATTTTAAATCAAA-T-TTTTTTCATTT-TTGGTT-AAA-ATCCATCATAA
** * * *
8725413 TTGGATGTTTGCATGGGGAAACATGAAGCATAAGCCATCCATTGAAAGGAAATGTCCATTTATAG
60 TTGGATGTTTGCATCAGGAAACATGAAGCAGAAGCCATCCATTGAAAAGAAAAGTCCATTTATAG
* * * ** * *
8725478 TCACTCATGCCTTCAAAAGCC-TATTACTCACTTTAAATTATTTTA
125 TCACTCATGCCATCGAAAGCCTTGTTACTTGCTTTTAATGA-TTTA
* * * * * * **
8725523 TAATCTTATAAATTATTTTAAATCAAA-ATATTTAATTTTTGTTTAAAATCAATCATAATTAAAT
1 TAATCTTATAAATGATTTTAAATCAAATTTTTTTCATTTTTGGTTAAAATCCATCATAATTGGAT
* * * *** ** * * * * *
8725587 ATCTGCATTAGGAAATGCGAAGTGGATGTCATCCATTGAGAAGAAAAGTCAATTTTTAGTCACTC
66 GTTTGCATCAGGAAACATGAAGCAGAAGCCATCCATTGAAAAGAAAAGTCCATTTATAGTCACTC
* * * *
8725652 ATGCCATCAAAAGCCTTGTCA-TTCGC-ATTAATGTTTTA
131 ATGCCATCGAAAGCCTTGTTACTT-GCTTTTAATGATTTA
* * * * *
8725690 TAATCTTATAAATGATTTTAAATGAAAATCTTTTTT-GTTTTTGGTGAAAGA-CCCTTATAATTG
1 TAATCTTATAAATGATTTTAAAT-CAAAT-TTTTTTCATTTTTGGTTAAA-ATCCATCATAATTG
* * * * * * *
8725753 CATGTTTGTATCAAGCAACATGAAGCAGAAGCTATCCATT-AACAGAAAAAGTCCACTTATAG-C
63 GATGTTTGCATCAGGAAACATGAAGCAGAAGCCATCCATTGAAAAG-AAAAGTCCATTTATAGTC
* *
8725816 AACTCATGCCTTCGAAAGTCTTGTTACT
127 -ACTCATGCCATCGAAAGCCTTGTTACT
8725844 CACTCTAAAT
Statistics
Matches: 669, Mismatches: 136, Indels: 59
0.77 0.16 0.07
Matches are distributed among these distances:
166 2 0.00
167 31 0.05
168 94 0.14
169 81 0.12
170 21 0.03
171 330 0.49
172 101 0.15
173 8 0.01
174 1 0.00
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Consensus pattern (169 bp):
TAATCTTATAAATGATTTTAAATCAAATTTTTTTCATTTTTGGTTAAAATCCATCATAATTGGAT
GTTTGCATCAGGAAACATGAAGCAGAAGCCATCCATTGAAAAGAAAAGTCCATTTATAGTCACTC
ATGCCATCGAAAGCCTTGTTACTTGCTTTTAATGATTTA
Found at i:8727240 original size:15 final size:15
Alignment explanation
Indices: 8727220--8727248 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8727210 TGTCAACAGC
8727220 CATATAATTATCAGT
1 CATATAATTATCAGT
8727235 CATATAATTATCAG
1 CATATAATTATCAG
8727249 ATTTAATCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.14, G:0.07, T:0.38
Consensus pattern (15 bp):
CATATAATTATCAGT
Found at i:8737398 original size:7 final size:7
Alignment explanation
Indices: 8737376--8737413 Score: 51
Period size: 7 Copynumber: 5.4 Consensus size: 7
8737366 TTGGACGCAA
8737376 AAAGAAG
1 AAAGAAG
8737383 AAACG-AG
1 AAA-GAAG
8737390 AAAGAAG
1 AAAGAAG
*
8737397 AAGGAAG
1 AAAGAAG
8737404 AAAGAAG
1 AAAGAAG
8737411 AAA
1 AAA
8737414 AGCAAAAAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
6 1 0.04
7 25 0.93
8 1 0.04
ACGTcount: A:0.68, C:0.03, G:0.29, T:0.00
Consensus pattern (7 bp):
AAAGAAG
Found at i:8739829 original size:171 final size:171
Alignment explanation
Indices: 8739554--8739866 Score: 373
Period size: 171 Copynumber: 1.8 Consensus size: 171
8739544 ATAATCATAT
* * *
8739554 AAATAATTTTAAATCAAAGTTTTTTTAATTTTTGGTTAAAACAAATCATAATTGGATGTTTACAT
1 AAATAATTTTAAATCAAAATTTTTTTAATTTTTGATTAAAACAAATCATAATTGGATATTTACAT
* *
8739619 TAGGAAAAATGAAGTAAAAGCCATCCATTGAGAAGAAAAGTACAC-TTGTGGTCACTCATCCCAT
66 TAGGAAAAATGAAGTAAAAGCCATCCATTGAGAAGAAAAGT-CACTTTATAGTCACTCATCCCAT
*
8739683 CGAAAGTCTTGTTACTTGCTTTAAATGATTTTATAAACTTAC
130 CGAAAGCCTTGTTACTTGCTTTAAATGATTTTATAAACTTAC
* * * * * *
8739725 AAATGATTTTAAATTAAAATATTTTTTGA-TTTTGATTAAAATAGATCATAATTGGATATTTGCA
1 AAATAATTTTAAATCAAAAT-TTTTTTAATTTTTGATTAAAACAAATCATAATTGGATATTTACA
** **** * *
8739789 -TAGAGAAACGTGAAGTGGGTGCCATCCATTG-GCGAGAAAAGTCTCTTTATAGTCACTCATCCC
65 TTAG-GAAAAATGAAGTAAAAGCCATCCATTGAG-AAGAAAAGTCACTTTATAGTCACTCATCCC
*
8739852 ATCGAACGCCTTGTT
128 ATCGAAAGCCTTGTT
8739867 CTTATAAATG
Statistics
Matches: 117, Mismatches: 21, Indels: 8
0.80 0.14 0.05
Matches are distributed among these distances:
170 6 0.05
171 104 0.89
172 7 0.06
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.35
Consensus pattern (171 bp):
AAATAATTTTAAATCAAAATTTTTTTAATTTTTGATTAAAACAAATCATAATTGGATATTTACAT
TAGGAAAAATGAAGTAAAAGCCATCCATTGAGAAGAAAAGTCACTTTATAGTCACTCATCCCATC
GAAAGCCTTGTTACTTGCTTTAAATGATTTTATAAACTTAC
Found at i:8740639 original size:172 final size:170
Alignment explanation
Indices: 8740014--8741175 Score: 651
Period size: 171 Copynumber: 6.8 Consensus size: 170
8740004 TTAATTAGTT
* * ** *
8740014 TTTATAATCTTATAAATGATTTTAAATCAAAATGTTTTTCATTTCTGGTTAAAACA-AGTCATAA
1 TTTATAATCTTATAAATGATTTTAAATCAAAATATTTTTCATTTTTCATTCAAACAGA-TCATAA
* * * * *
8740078 TTGGATATTTGCAT-TGAAAAACATGAAGCGAAAGCCTTCCATTGACAGGAAAAGTCCATTTATA
65 CTGGATGTTTGCATCAG-AAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATA
**
8740142 GTCACTCATGCCTT-TGAAAGCCTTGTTACAT-GCTTTAAGCGG
129 GTCACTCATG-CTTCTGAAAGCCTTGTTAC-TCGCTTTAAATGG
* * * * * **
8740184 TTCAATAACCTTATAAATGATTTTAAATCGAAATTTTTTTCCTTCCT-AGTT-AAGACAGATCAT
1 TT-TATAATCTTATAAATGATTTTAAATCAAAATATTTTTCATTTTTCA-TTCAA-ACAGATCAT
* * * ** * * *
8740247 AATTAGATGTTTGCATCA-AGAAACGTGAA-ATAGAAGCCATCCATTGACACGAAAAGTTCTTTT
63 AACTGGATGTTTGCATCAGA-AAACATGAAGCGA-AAGCCATCCATTGACAAGAAAAGTCCATTT
* * * * * * ** *
8740310 AAAGTCGCTAATGCCTTC-AAAAGCCTTGTTGCTCACTTTCTATAGT
126 ATAGTCACTCATG-CTTCTGAAAGCCTTGTTACTCGCTTTAAAT-GG
* * * * * * * * * ** *
8740356 TTTACAATCTTGTCAATTATTTTAAATTAGTATATACATATATAATGTTTTTGTTTAAA-ATTGA
1 TTTATAATCTTATAAATGATTTTAAATCA--A-A-ATATTTTTCAT-TTTTCATTCAAACA--GA
* * * ** * * *
8740420 TCATAATTGGATATTTTCATC-GAGAAACATGAAATG-GCTA-TCATCCATTAAGAAGAAAAGTC
59 TCATAACTGGATGTTTGCATCAGA-AAACATG-AA-GCGAAAGCCATCCATTGACAAGAAAAGTC
* * * * * *
8740482 TATTTATAGTCATTCATGCTATCTAAAAACCTTGTCACTCACTTTAAATGG
121 CATTTATAGTCACTCATGCT-TCTGAAAGCCTTGTTACTCGCTTTAAATGG
* * * * * **
8740533 ATTTATAATCTTATAAGTGATTTTAAATCAAAATCTTTTTCAGTTTTTCTTTCAATC-TATTGTA
1 -TTTATAATCTTATAAATGATTTTAAATCAAAATATTTTTCA-TTTTTCATTCAAACAGATCATA
* * * * *
8740597 ATTGGATGTTTGGATC-GAAATACATGAAGCGGATGGCATCCATTGACAAGAAAAGTCCATTTAT
64 ACTGGATGTTTGCATCAGAAA-ACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTAT
* * * * *
8740661 AGTCACTCATGCTTTTGAATGCCTTGTTACTTGTTTTAATTGG
128 AGTCACTCATGCTTCTGAAAGCCTTGTTACTCGCTTTAAATGG
* * *
8740704 TATAATAATCTTATAAATGATCTTAAATCAAAATTTTTTTCATTTTTCATTCAAACAGATCATAA
1 T-TTATAATCTTATAAATGATTTTAAATCAAAATATTTTTCATTTTTCATTCAAACAGATCATAA
** * *
8740769 CTGGATGTTTGCATCAGAAAATGTGAAGCGAAAGCCAGCCATTGACAAGAAAAGTCCATTTATAT
65 CTGGATGTTTGCATCAGAAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAG
* *
8740834 TCACTCATGCCTTC-GAAAGCCTTGTTATTCGCTTTAAGTGG
130 TCACTCATG-CTTCTGAAAGCCTTGTTACTCGCTTTAAATGG
* * ** *
8740875 TTGTATATTCTTATAACTGATTTTAAATCAAAATATTTTTCATTTTTGGTTAAAATC-GATCATA
1 TT-TATAATCTTATAAATGATTTTAAATCAAAATATTTTTCATTTTTCATTCAAA-CAGATCATA
* * * * * * ** * * * * * * *
8740939 ATTGAATATTTACATTAGGAAATGTGAAGTGGATGGCATCC-TCTAACAAGAAAAGTTCGTTTAT
64 ACTGGATGTTTGCATCAGAAAACATGAAGCGAAAGCCATCCAT-TGACAAGAAAAGTCCATTTAT
* * * ** * * *
8741003 AGTCACTCAAGCCATC-AAAAGCCAAGTTACTCACTTCAAGTGG
128 AGTCACTCATG-CTTCTGAAAGCCTTGTTACTCGCTTTAAATGG
** ** * * * * *
8741046 TTTTATAATCCGATAAATGATTTTAAATTGAATTA-TTTTCA-ATTTCAGTTAAAACAAATCCTA
1 -TTTATAATCTTATAAATGATTTTAAATCAAAATATTTTTCATTTTTCA-TTCAAACAGATCATA
* ** * * * * * *
8741109 ATTGGATGTTTGCATTGGGAAACATGAAACGAAAGCAATTCATTGTGC-A-AAAAGGCCATTTAT
64 ACTGGATGTTTGCATCAGAAAACATGAAGCGAAAGCCATCCATTG-ACAAGAAAAGTCCATTTAT
8741172 AGTC
128 AGTC
8741176 TGTCACAGCC
Statistics
Matches: 757, Mismatches: 192, Indels: 87
0.73 0.19 0.08
Matches are distributed among these distances:
169 19 0.03
170 70 0.09
171 454 0.60
172 75 0.10
173 1 0.00
174 14 0.02
175 8 0.01
176 8 0.01
177 62 0.08
178 46 0.06
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (170 bp):
TTTATAATCTTATAAATGATTTTAAATCAAAATATTTTTCATTTTTCATTCAAACAGATCATAAC
TGGATGTTTGCATCAGAAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
CACTCATGCTTCTGAAAGCCTTGTTACTCGCTTTAAATGG
Found at i:8744528 original size:21 final size:21
Alignment explanation
Indices: 8744504--8744557 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
8744494 AATAGAGAGT
* * *
8744504 TTCTCATTGCAGCGAGATTCA
1 TTCTCACTGCAGCAAAATTCA
*
8744525 TTCTCGCTGCAGCAAAATTCA
1 TTCTCACTGCAGCAAAATTCA
*
8744546 TTCTCGCTGCAG
1 TTCTCACTGCAG
8744558 TGAGATCCAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.31
Consensus pattern (21 bp):
TTCTCACTGCAGCAAAATTCA
Found at i:8748758 original size:37 final size:37
Alignment explanation
Indices: 8748708--8748816 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
8748698 CATATAAATA
*
8748708 CATCATCATCATGTGTGCAGTCCCTACTCGTACACTC
1 CATCATCATCATGTGTGCAGTCCCTACTCGCACACTC
* * *
8748745 CATCATCGTCATGTGTGTACTCCCTACTCGCACACTC
1 CATCATCATCATGTGTGCAGTCCCTACTCGCACACTC
*
8748782 AATCATCATCATGTGTGCAGTCCCTACTCGCACAC
1 CATCATCATCATGTGTGCAGTCCCTACTCGCACAC
8748817 CTTAATATCA
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.22, C:0.36, G:0.14, T:0.28
Consensus pattern (37 bp):
CATCATCATCATGTGTGCAGTCCCTACTCGCACACTC
Done.