Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26303135
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.30
Warning! 1968672 characters in sequence are not A, C, G, or T
File 26 of 66
Found at i:8748827 original size:37 final size:37
Alignment explanation
Indices: 8748709--8748829 Score: 172
Period size: 37 Copynumber: 3.3 Consensus size: 37
8748699 ATATAAATAC
* *
8748709 ATCATCATCATGTGTGCAGTCCCTACTCGTACACTCC
1 ATCATCATCATGTGTGCAGTCCCTACTCGCACACTCA
* * *
8748746 ATCATCGTCATGTGTGTACTCCCTACTCGCACACTCA
1 ATCATCATCATGTGTGCAGTCCCTACTCGCACACTCA
*
8748783 ATCATCATCATGTGTGCAGTCCCTACTCGCACACCTTA
1 ATCATCATCATGTGTGCAGTCCCTACTCGCACA-CTCA
8748821 AT-ATCATCA
1 ATCATCATCA
8748830 CCCAACCTCA
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
37 69 0.93
38 5 0.07
ACGTcount: A:0.24, C:0.34, G:0.12, T:0.30
Consensus pattern (37 bp):
ATCATCATCATGTGTGCAGTCCCTACTCGCACACTCA
Found at i:8749366 original size:19 final size:20
Alignment explanation
Indices: 8749328--8749367 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
8749318 AGAAGAAGAC
8749328 AAGCTACTGGAAATTTCAAG
1 AAGCTACTGGAAATTTCAAG
*
8749348 AAGCTGCTGGAAA-TTCAAG
1 AAGCTACTGGAAATTTCAAG
8749367 A
1 A
8749368 TATTTATAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.23
Consensus pattern (20 bp):
AAGCTACTGGAAATTTCAAG
Found at i:8757227 original size:27 final size:28
Alignment explanation
Indices: 8757170--8757227 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
8757160 GGAAAAATGT
*
8757170 CCTGGTGGTGGAAAATTATAATTTTGCC
1 CCTGGTGGTGGAAAATTATAATTTTGAC
8757198 CCTGG-GGTGGCAAAATTACT-ATTTT-AC
1 CCTGGTGGTGG-AAAATTA-TAATTTTGAC
8757225 CCT
1 CCT
8757228 TTTACTTCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
27 9 0.33
28 17 0.63
29 1 0.04
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.34
Consensus pattern (28 bp):
CCTGGTGGTGGAAAATTATAATTTTGAC
Found at i:8757298 original size:20 final size:20
Alignment explanation
Indices: 8757281--8757318 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
8757271 TCTCAAATCT
8757281 TACTCCAATAAGTCAAATTA
1 TACTCCAATAAGTCAAATTA
8757301 TACTCCAATAAGTCAAAT
1 TACTCCAATAAGTCAAAT
8757319 GGGGCCAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.45, C:0.21, G:0.05, T:0.29
Consensus pattern (20 bp):
TACTCCAATAAGTCAAATTA
Found at i:8761475 original size:5 final size:5
Alignment explanation
Indices: 8761468--8761507 Score: 62
Period size: 5 Copynumber: 8.0 Consensus size: 5
8761458 CTATTCAATC
* *
8761468 TAACC TAACT TAACT TAACT TAACT TATCT TAACT TAACT
1 TAACT TAACT TAACT TAACT TAACT TAACT TAACT TAACT
8761508 GGACTTGGGG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (5 bp):
TAACT
Found at i:8761570 original size:15 final size:15
Alignment explanation
Indices: 8761550--8761593 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
8761540 CCTTAAAACA
8761550 ACTTTAAAACCAAAG
1 ACTTTAAAACCAAAG
*
8761565 ACTTTAAAATCCAATG
1 ACTTTAAAA-CCAAAG
*
8761581 -CTTTAAAATCAAA
1 ACTTTAAAACCAAA
8761594 ATATCTGATC
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
14 3 0.12
15 17 0.68
16 5 0.20
ACGTcount: A:0.50, C:0.18, G:0.05, T:0.27
Consensus pattern (15 bp):
ACTTTAAAACCAAAG
Found at i:8763012 original size:13 final size:13
Alignment explanation
Indices: 8762994--8763018 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8762984 TTTCAGAAAA
8762994 TTTATAAAATCAT
1 TTTATAAAATCAT
8763007 TTTATAAAATCA
1 TTTATAAAATCA
8763019 CAATTTTTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTATAAAATCAT
Found at i:8768683 original size:170 final size:169
Alignment explanation
Indices: 8768260--8770155 Score: 1007
Period size: 170 Copynumber: 11.3 Consensus size: 169
8768250 GCTTTAAACC
* ** * * * **
8768260 GTTTTATAATCTTATAAATGATTTCCAATCAAATTGTTTTTCCTTTTTCTTTAAAACAGATCATA
1 GTTTAATAATCTTATAAATGATTTTAAATCAAAAT-TTTTTCATTTCTGGTTAAAACAGATCATA
* * * * * *
8768325 ATTGGATGTTTGCATCAGGAAACGTGAAGTAAAAGCCATCCATTGAGAAGCAAAGTCCATTTGTA
65 ATTGGATGTTTACATCAGGAAACGTGAAGCAGAAGCCATCCATTGACAA-AAAAGTCCATTTATA
* * * * *
8768390 GTCACTCATCCCATCAAAAGTCTTGTTACT-TGCTTTAAATG
129 GTCACTCATGCCTTCAAAAGCCTTGTTACTCAG-TTTAAGTG
* * * **
8768431 GTTTTATAAACTTATAAATGATTTTAAATCAAAATCTTTTTCATTT-T-TTTAAAA-ATCCTTCA
1 GTTTAATAATCTTATAAATGATTTTAAATCAAAAT-TTTTTCATTTCTGGTTAAAACA--GATCA
* * * *
8768493 TAGA-TGGATGTTTGCATCAGGAAACATGAAGCAGATGCCATGCATTGACAAAAAAG-CTCATTT
63 TA-ATTGGATGTTTACATCAGGAAACGTGAAGCAGAAGCCATCCATTGACAAAAAAGTC-CATTT
* * * * * ** *
8768556 ATAGTCACTTATGCCATCGAATGCCTTGTTTCTTTGTTTAAGTC
126 ATAGTCACTCATGCCTTCAAAAGCCTTGTTACTCAGTTTAAGTG
* * * * *
8768600 ATTTAATAATCTTATAAATAATTTTAAATCAAAATTGTTCTCATTTCTGGTTCAAACATATCATA
1 GTTTAATAATCTTATAAATGATTTTAAATCAAAATT-TTTTCATTTCTGGTTAAAACAGATCATA
* *
8768665 ATTGGATGTTTACATCAGGAAATAG-GAAGC-GAAAGTCATCCATTGACAATAAAAGTCCA-TT-
65 ATTGGATGTTTACATCAGGAAA-CGTGAAGCAG-AAGCCATCCATTGACAA-AAAAGTCCATTTA
* * *
8768726 TAGTCACTCATGCCTTTAAAAGCCTTATTACTCACTTTAAGTG
127 TAGTCACTCATGCCTTCAAAAGCCTTGTTACTCAGTTTAAGTG
* * * ** * * *
8768769 GTTTAAGAATATTATAAATGATTTTAAATTTAATTTTTTTTCATTTTTGGTTAAAATAGATCATT
1 GTTTAATAATCTTATAAATGATTTTAAA-TCAAAATTTTTTCATTTCTGGTTAAAACAGATCATA
* * * * * * * *
8768834 ATTGAATG-TTAGTAT-TGAGAAACGTGAAGC-GAAAGCTATCAATTGATAGGAAAAGTCAATTT
65 ATTGGATGTTTA-CATCAG-GAAACGTGAAGCAG-AAGCCATCCATTGACA-AAAAAGTCCATTT
* *
8768896 ATAGTCACTCATGCCTTCAAAAACCTTGTTACACAGTTTAAGTG
126 ATAGTCACTCATGCCTTCAAAAGCCTTGTTACTCAGTTTAAGTG
*
8768940 GTTTAATAATCTTATAAATGATTTTAAATCAAAATTTCTTTCATTTCTGGTTAAAACAAATCATA
1 GTTTAATAATCTTATAAATGATTTTAAATCAAAATTT-TTTCATTTCTGGTTAAAACAGATCATA
* * * * * *
8769005 ATTAGATGTTTACAT-TGAGAAACGTGAAGCAAAAGCCATCCATTCATAAAAAAGTCCTTTTATA
65 ATTGGATGTTTACATCAG-GAAACGTGAAGCAGAAGCCATCCATTGACAAAAAAGTCCATTTATA
* * * *
8769069 GTAACTCATGCCTTCGAAAGCCTTATTACTC-GCTTTAAATG
129 GTCACTCATGCCTTCAAAAGCCTTGTTACTCAG-TTTAAGTG
* * * *
8769110 CTTTTATAATC-T-T--AT-A----AAAT----A-TTTTTCATTT-T-TTTAAATCA-ATCATAA
1 GTTTAATAATCTTATAAATGATTTTAAATCAAAATTTTTTCATTTCTGGTTAAAACAGATCATAA
* * * ** *
8769158 TTGGATGTTTGCATCAGAAAACGTGAAAGC-GAATGACATCCATAAAGAAGAAAAGT---TTATA
66 TTGGATGTTTACATCAGGAAACGTG-AAGCAGAA-GCCATCCATTGACAA-AAAAGTCCATT-TA
* * * * * * * *
8769219 TATTTACTCATGTCATCGAAAGCCTTATAACTC-GCTTTAAATG
127 TAGTCACTCATGCCTTCAAAAGCCTTGTTACTCAG-TTTAAGTG
* * * * **
8769262 GATTT-ATAATCTCATAAAAGATTTTAAATCAAAATCGTTTTT-ATTTTTGCTTAAAATC-TCTC
1 G-TTTAATAATCTTATAAATGATTTTAAATCAAAAT--TTTTTCATTTCTGGTTAAAA-CAGATC
* * * * * * * *
8769324 GTAATTGGATGTTTGCATCAAGAAACATGACGCAGATGACATCCATTGCCAAGAAAAGTCCATTT
62 ATAATTGGATGTTTACATCAGGAAACGTGAAGCAGAAGCCATCCATTGACAA-AAAAGTCCATTT
*
8769389 ATAGTCACTCATGCCTTCAAAAGCCTTGTTACTC-GTTTTAAATG
126 ATAGTCACTCATGCCTTCAAAAGCCTTGTTACTCAG-TTTAAGTG
* ** * *
8769433 GTTTAATAATCATATAAATGATTTTAAATCAAACCTTTTTCATTTTTGGTTAAAACAAATCATAA
1 GTTTAATAATCTTATAAATGATTTTAAATCAAAATTTTTTCATTTCTGGTTAAAACAGATCATAA
* * * * * * * ** * * *
8769498 TCGGCTGTTTGCATTAGGAAATGTGAAG-TGAAAGCAATTTATTGACAAGAAAAGCCCACTAATA
66 TTGGATGTTTACATCAGGAAACGTGAAGCAG-AAGCCATCCATTGACAA-AAAAGTCCATTTATA
* * * ** * * *
8769562 GTCACTTATACTTTTTAAAGCCTTGTTACTCACTTTAAATT
129 GTCACTCATGCCTTCAAAAGCCTTGTTACTCAGTTTAAGTG
* * * * ** * * * *
8769603 ATTTTATAATCTTATACATTATTTTAAGGCAAAATATCTT-AGTGTT-T-GTCAAAA-ATCTATC
1 GTTTAATAATCTTATAAATGATTTTAAATCAAAATTTTTTCA-T-TTCTGGTTAAAACA--GATC
** * * * * ** * * *
8769664 ATAATTAAACGTTTGCAT-AGGGAAACATTAAGTGGATGCCAGCCATTGAGAAGAAAAGTCCATT
62 ATAATTGGATGTTTACATCA-GGAAACGTGAAGCAGAAGCCATCCATTGACAA-AAAAGTCCATT
* * * *
8769728 TATATTCACTCATTCCTTCGAAAGCCTTGTTACTCACTTTAA---
125 TATAGTCACTCATGCCTTCAAAAGCCTTGTTACTCAGTTTAAGTG
* * * * *
8769770 -ATT-AT--T-TTAT-AAT-CTTCTAAAT-----TTCTTTCATTTTTGGTTAAAATCA-ATCATA
1 GTTTAATAATCTTATAAATGATTTTAAATCAAAATTTTTTCATTTCTGGTTAAAA-CAGATCATA
* * * ** * * **** *
8769822 ACTGGATGTTTGCCTTGGGAAACGTGAAACAAAAATTGTCCATTCGAAAAACAAAAAGTCCA-TT
65 ATTGGATGTTTACATCAGGAAACGTGAAGCAGAAGCCATCCATT-G--ACA-AAAAAGTCCATTT
* * * *
8769886 ACAGTCAATCATGCCTTCAAAAGTCTTGTTA--CATGCTTCAAGTG
126 ATAGTCACTCATGCCTTCAAAAGCCTTGTTACTCA-G-TTTAAGTG
* * * * * *
8769930 TTTTAATAATCTTATAAATGATTTTAAATCAAATTTTTTTCATTTTTGATTCAAACAGATCATTA
1 GTTTAATAATCTTATAAATGATTTTAAATCAAAATTTTTTCATTTCTGGTTAAAACAGATCATAA
* * * * * ***
8769995 TTGGATG-TTAGCAT-TGGAAAACATGAAGCAAAAGCCATCTATTTACAAGAAAAGTATTTTTAT
66 TTGGATGTTTA-CATCAGG-AAACGTGAAGCAGAAGCCATCCATTGACAA-AAAAGTCCATTTAT
* ** * * * *
8770058 AATCACTCATGCCTTTGAAAGCCTTGTTATTTACTTTAAAT-
128 AGTCACTCATGCCTTCAAAAGCCTTGTTACTCAGTTTAAGTG
* * *
8770099 GATTATATAATCTTATCAATTATTTTAAATCAAAATGTTTTTCAGTTT-TGGTTAAAA
1 GTTTA-ATAATCTTATAAATGATTTTAAATCAAAAT-TTTTTCA-TTTCTGGTTAAAA
8770156 ATTATGAGAC
Statistics
Matches: 1330, Mismatches: 292, Indels: 206
0.73 0.16 0.11
Matches are distributed among these distances:
151 2 0.00
152 74 0.06
153 26 0.02
154 10 0.01
155 46 0.03
156 11 0.01
157 33 0.02
158 12 0.01
159 1 0.00
160 5 0.00
161 12 0.01
162 6 0.00
163 1 0.00
164 1 0.00
165 8 0.01
166 7 0.01
167 11 0.01
168 17 0.01
169 261 0.20
170 463 0.35
171 262 0.20
172 61 0.05
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Consensus pattern (169 bp):
GTTTAATAATCTTATAAATGATTTTAAATCAAAATTTTTTCATTTCTGGTTAAAACAGATCATAA
TTGGATGTTTACATCAGGAAACGTGAAGCAGAAGCCATCCATTGACAAAAAAGTCCATTTATAGT
CACTCATGCCTTCAAAAGCCTTGTTACTCAGTTTAAGTG
Found at i:8768957 original size:171 final size:170
Alignment explanation
Indices: 8768260--8769498 Score: 659
Period size: 171 Copynumber: 7.4 Consensus size: 170
8768250 GCTTTAAACC
* ** * * * ** *
8768260 GTTTTATAATCTTATAAATGATTTCCAATC-AAATTGTTTTTCCTTTTTCTTTAAAACAGATCAT
1 GTTTAATAATCTTATAAATGATTTTAAATCAAAATT-TCTTTCATTTCTGGTTAAAACAAATCAT
* * * * * * * * * *
8768324 AATTGGATGTTTGCA-TCAGGAAACGTGAAGTAAAAGCCATCCATTGAGAAGCAAAGTCCATTTG
65 AATTAGATGTTTACATTGA-GAAACGTGAAGCAAAAGCCATCAATTCATAA-AAAAGTCAATTTA
* * * * * *
8768388 TAGTCACTCATCCCATCAAAAGTCTTGTTACT-TGCTTTAAATG
128 TAGTCACTCATGCCTTCAAAAGCCTTATTACTCAG-TTTAAGTG
* * * **
8768431 GTTTTATAAACTTATAAATGATTTTAAATCAAAATCTT-TTTCATTT-T-TTTAAAA-ATCCTTC
1 GTTTAATAATCTTATAAATGATTTTAAATCAAAAT-TTCTTTCATTTCTGGTTAAAACA--AATC
* * * * * * * *
8768492 ATAGA-TGGATGTTTGCA-TCAGGAAACATGAAGCAGATGCCATGC-ATTGACAAAAAAGCTC-A
63 ATA-ATTAGATGTTTACATTGA-GAAACGTGAAGCAAAAGCCAT-CAATTCATAAAAAAG-TCAA
* * * * * * ** *
8768553 TTTATAGTCACTTATGCCATCGAATGCCTTGTTTCTTTGTTTAAGTC
124 TTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCAGTTTAAGTG
* * * * *
8768600 ATTTAATAATCTTATAAATAATTTTAAATCAAAATTGT-TCTCATTTCTGGTTCAAACATATCAT
1 GTTTAATAATCTTATAAATGATTTTAAATCAAAATT-TCTTTCATTTCTGGTTAAAACAAATCAT
* * * * * * * * *
8768664 AATTGGATGTTTACA-TCAGGAAATAG-GAAGCGAAAGTCATCCATTGACAATAAAAGTCCA-TT
65 AATTAGATGTTTACATTGA-GAAA-CGTGAAGCAAAAGCCATCAATTCATAA-AAAAGTCAATTT
* *
8768726 -TAGTCACTCATGCCTTTAAAAGCCTTATTACTCACTTTAAGTG
127 ATAGTCACTCATGCCTTCAAAAGCCTTATTACTCAGTTTAAGTG
* * ** * * * * * *
8768769 GTTTAAGAATATTATAAATGATTTTAAATTTAATTTTTTTTCATTTTTGGTTAAAATAGATCATT
1 GTTTAATAATCTTATAAATGATTTTAAATCAAAATTTCTTTCATTTCTGGTTAAAACAAATCATA
* * * * *
8768834 ATT-GAATG-TTAGTATTGAGAAACGTGAAGCGAAAGCTATCAATTGATAGGAAAAGTCAATTTA
66 ATTAG-ATGTTTA-CATTGAGAAACGTGAAGCAAAAGCCATCAATTCATA-AAAAAGTCAATTTA
* * *
8768897 TAGTCACTCATGCCTTCAAAAACCTTGTTACACAGTTTAAGTG
128 TAGTCACTCATGCCTTCAAAAGCCTTATTACTCAGTTTAAGTG
8768940 GTTTAATAATCTTATAAATGATTTTAAATCAAAATTTCTTTCATTTCTGGTTAAAACAAATCATA
1 GTTTAATAATCTTATAAATGATTTTAAATCAAAATTTCTTTCATTTCTGGTTAAAACAAATCATA
* **
8769005 ATTAGATGTTTACATTGAGAAACGTGAAGCAAAAGCCATCCATTCATAAAAAAGTCCTTTTATAG
66 ATTAGATGTTTACATTGAGAAACGTGAAGCAAAAGCCATCAATTCATAAAAAAGTCAATTTATAG
* * *
8769070 TAACTCATGCCTTCGAAAGCCTTATTACTC-GCTTTAAATG
131 TCACTCATGCCTTCAAAAGCCTTATTACTCAG-TTTAAGTG
* * * *
8769110 CTTTTATAATC-T-T--AT-A----AAAT----A-TT-TTTCATTT-T-TTTAAATC-AATCATA
1 GTTTAATAATCTTATAAATGATTTTAAATCAAAATTTCTTTCATTTCTGGTTAAAACAAATCATA
* * * * * * * ** *
8769157 ATTGGATGTTTGCA-TCAGAAAACGTGAAAGCGAATGACATCCATAAAGAAGAAAAGT---TTAT
66 ATTAGATGTTTACATTGAG-AAACGTG-AAGCAAAAGCCATCAATTCATAA-AAAAGTCAATT-T
* * * * * * *
8769218 ATATTTACTCATGTCATCGAAAGCCTTATAACTC-GCTTTAAATG
127 ATAGTCACTCATGCCTTCAAAAGCCTTATTACTCAG-TTTAAGTG
* * * * **
8769262 GATTT-ATAATCTCATAAAAGATTTTAAATCAAAATCGTT-TTT-ATTTTTGCTTAAAATC-TCT
1 G-TTTAATAATCTTATAAATGATTTTAAATCAAAAT--TTCTTTCATTTCTGGTTAAAA-CAAAT
* * * ** * * * * * * * *
8769323 CGTAATTGGATGTTTGCATCAAGAAACATGACGCAGATGACATCCATTGCCA-AGAAAAGTCCAT
62 CATAATTAGATGTTTACATTGAGAAACGTGAAGCAAAAGCCATCAATT--CATAAAAAAGTCAAT
* *
8769387 TTATAGTCACTCATGCCTTCAAAAGCCTTGTTACTC-GTTTTAAATG
125 TTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCAG-TTTAAGTG
* ** *
8769433 GTTTAATAATCATATAAATGATTTTAAATCAAACCTT-TTTCATTTTTGGTTAAAACAAATCATA
1 GTTTAATAATCTTATAAATGATTTTAAATCAAAATTTCTTTCATTTCTGGTTAAAACAAATCATA
8769497 AT
66 AT
8769499 CGGCTGTTTG
Statistics
Matches: 856, Mismatches: 151, Indels: 123
0.76 0.13 0.11
Matches are distributed among these distances:
151 5 0.01
152 72 0.08
153 26 0.03
154 8 0.01
155 8 0.01
156 3 0.00
157 2 0.00
161 8 0.01
165 2 0.00
166 2 0.00
167 4 0.00
168 15 0.02
169 241 0.28
170 204 0.24
171 243 0.28
172 12 0.01
173 1 0.00
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Consensus pattern (170 bp):
GTTTAATAATCTTATAAATGATTTTAAATCAAAATTTCTTTCATTTCTGGTTAAAACAAATCATA
ATTAGATGTTTACATTGAGAAACGTGAAGCAAAAGCCATCAATTCATAAAAAAGTCAATTTATAG
TCACTCATGCCTTCAAAAGCCTTATTACTCAGTTTAAGTG
Found at i:8769180 original size:152 final size:152
Alignment explanation
Indices: 8768998--8769286 Score: 359
Period size: 152 Copynumber: 1.9 Consensus size: 152
8768988 GGTTAAAACA
* * ** *
8768998 AATCATAATTAGATGTTTACATTGAGAAACGTG-AAGCAAAAGCCATCCATTCATAA-AAAAGTC
1 AATCATAATTAGATGTTTACATAGAGAAACGTGAAAGCAAAAGACATCCATAAAGAAGAAAAGT-
* * * * *
8769061 CTTTTATAGTAACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGCTTTTATAATCTTATA
65 -TTATATAGTAACTCATGCCATCGAAAGCCTTATAACTCGCTTTAAATGCATTTATAATCTCATA
*
8769126 AAATATTTTTCATTTTTTTAAATC
129 AAAGATTTTTCATTTTTTTAAATC
* * * *
8769150 AATCATAATTGGATGTTTGCATCAGA-AAACGTGAAAGCGAATGACATCCATAAAGAAGAAAAGT
1 AATCATAATTAGATGTTTACAT-AGAGAAACGTGAAAGCAAAAGACATCCATAAAGAAGAAAAGT
* * * *
8769214 TTATATATTTACTCATGTCATCGAAAGCCTTATAACTCGCTTTAAATGGATTTATAATCTCATAA
65 TTATATAGTAACTCATGCCATCGAAAGCCTTATAACTCGCTTTAAATGCATTTATAATCTCATAA
8769279 AAGATTTT
130 AAGATTTT
8769287 AAATCAAAAT
Statistics
Matches: 115, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
152 90 0.78
153 19 0.17
154 6 0.05
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.35
Consensus pattern (152 bp):
AATCATAATTAGATGTTTACATAGAGAAACGTGAAAGCAAAAGACATCCATAAAGAAGAAAAGTT
TATATAGTAACTCATGCCATCGAAAGCCTTATAACTCGCTTTAAATGCATTTATAATCTCATAAA
AGATTTTTCATTTTTTTAAATC
Found at i:8774144 original size:2 final size:2
Alignment explanation
Indices: 8774137--8774179 Score: 59
Period size: 2 Copynumber: 21.0 Consensus size: 2
8774127 TGTTATGTTG
* *
8774137 AT AT AT AT AT AT AT AT AT AT AT AT AT CT AA AT AT AT AT GAT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT
8774180 GTATTGATAG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
2 34 0.94
3 2 0.06
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (2 bp):
AT
Found at i:8775732 original size:17 final size:18
Alignment explanation
Indices: 8775710--8775744 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
8775700 AACCCTAGGA
8775710 AGAG-AAGAAAGAAAAAG
1 AGAGAAAGAAAGAAAAAG
*
8775727 AGAGAAAGGAAGAAAAAG
1 AGAGAAAGAAAGAAAAAG
8775745 CTTGGTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (18 bp):
AGAGAAAGAAAGAAAAAG
Found at i:8776908 original size:61 final size:61
Alignment explanation
Indices: 8776813--8777029 Score: 276
Period size: 61 Copynumber: 3.6 Consensus size: 61
8776803 GTGGCAAATG
* *
8776813 CAACCGTGCATGTGCGGAGTGGGCAGTGCACATGTTGGTAATGATTCTGTCGTGATAATTA
1 CAACCGTGCATGTGCGAAGTGGGCAGTGCACATGTTGGTAATGATGCTGTCGTGATAATTA
* ** * *
8776874 CAACCGTGCATGTGTGAAGTGGGCAGTGTGCATGTCGGTAATGATGATGTCGTGATAATTA
1 CAACCGTGCATGTGCGAAGTGGGCAGTGCACATGTTGGTAATGATGCTGTCGTGATAATTA
* * * * * *
8776935 CAACCGTGCATGTGAGGAA-TGGGCAGTGCACATGCTGATAATGATGCTATTGTTATAATTA
1 CAACCGTGCATGTG-CGAAGTGGGCAGTGCACATGTTGGTAATGATGCTGTCGTGATAATTA
*
8776996 CAACCGTGCATGTGC-AGAGTAGGCAGTGCACATG
1 CAACCGTGCATGTGCGA-AGTGGGCAGTGCACATG
8777030 CCGGTGATGA
Statistics
Matches: 134, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
59 1 0.01
60 1 0.01
61 129 0.96
62 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (61 bp):
CAACCGTGCATGTGCGAAGTGGGCAGTGCACATGTTGGTAATGATGCTGTCGTGATAATTA
Found at i:8777040 original size:122 final size:122
Alignment explanation
Indices: 8776813--8777041 Score: 316
Period size: 122 Copynumber: 1.9 Consensus size: 122
8776803 GTGGCAAATG
* * * * * *
8776813 CAACCGTGCATGTGCGGAGTGGGCAGTGCACATGTTGGTAATGATTCTGTCGTGATAATTACAAC
1 CAACCGTGCATGTGAGGAATGGGCAGTGCACATGCTGATAATGATGCTATCGTGATAATTACAAC
* * ** *
8776878 CGTGCATGTGTGAAGTGGGCAGTGTGCATGTCGGTAATGATGATGTCGTGATAATTA
66 CGTGCATGTGAGAAGTAGGCAGTGCACATGCCGGTAATGATGATGTCGTGATAATTA
* *
8776935 CAACCGTGCATGTGAGGAATGGGCAGTGCACATGCTGATAATGATGCTATTGTTATAATTACAAC
1 CAACCGTGCATGTGAGGAATGGGCAGTGCACATGCTGATAATGATGCTATCGTGATAATTACAAC
*
8777000 CGTGCATGTGCAG-AGTAGGCAGTGCACATGCCGGTGATGATG
66 CGTGCATGTG-AGAAGTAGGCAGTGCACATGCCGGTAATGATG
8777042 TACATGAGCT
Statistics
Matches: 92, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
122 91 0.99
123 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.28
Consensus pattern (122 bp):
CAACCGTGCATGTGAGGAATGGGCAGTGCACATGCTGATAATGATGCTATCGTGATAATTACAAC
CGTGCATGTGAGAAGTAGGCAGTGCACATGCCGGTAATGATGATGTCGTGATAATTA
Found at i:8780720 original size:2 final size:2
Alignment explanation
Indices: 8780713--8780743 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
8780703 GTTATGTATG
*
8780713 TA TA TA TA TA TA TA AA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8780744 TTATGCACTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:8783089 original size:43 final size:43
Alignment explanation
Indices: 8783041--8783150 Score: 118
Period size: 43 Copynumber: 2.6 Consensus size: 43
8783031 TTACCAGCTC
**
8783041 ATGCGCACTCCCTACTGGCACAT-GGCTGGGTCATCACCGAG-TT
1 ATGCGCACTCCCTACTGGCACATAATC-GGGTCATCACCG-GCTT
* *
8783084 ATGCGCACTCCATACTCGG-ACATAATCGGGTCATCATCGGCTT
1 ATGCGCACTCCCTACT-GGCACATAATCGGGTCATCACCGGCTT
* *
8783127 ATGTGCACTCCCTACTCGCACATA
1 ATGCGCACTCCCTACTGGCACATA
8783151 GCCAAATCAA
Statistics
Matches: 56, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
42 2 0.04
43 51 0.91
44 3 0.05
ACGTcount: A:0.22, C:0.33, G:0.21, T:0.25
Consensus pattern (43 bp):
ATGCGCACTCCCTACTGGCACATAATCGGGTCATCACCGGCTT
Found at i:8785639 original size:171 final size:170
Alignment explanation
Indices: 8785206--8788945 Score: 2469
Period size: 170 Copynumber: 22.1 Consensus size: 170
8785196 TTTCCAATCG
* ** * * * * *
8785206 AATTGTTTTTCATTCCTAGTTAAAACACATCATAATTGGATGTTTGTATCAGGAAACATGAAGC-
1 AATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCATTAGGAAACGTGAAGCG
* * * * ** * **
8785270 AACAGCCATCCTTTGAGAAGAAAAGTTCATTTATAATCACTCAACCCATCAAAAGCCTTGTTACT
66 AA-AGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACT
* *
8785335 TGCTTTAAATGGTTTTATAATCTTCTAAATGATTTTAGATCA
130 TGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAAT-A
* ** * * * * *
8785377 AAATCGTTTTCAATTTTGGTT----C-CA-CATAGTTGGATGTTTTCATT-GAGAAACATGAAG-
1 AATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCATTAG-GAAACGTGAAGC
* * * * * * *
8785434 TAGATGGCATCCATTGATAAGAAAAGTTCATTTATACTCACTTATGCCTTTGAAAGCCTTGTTAC
65 GA-AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTAC
* * * *
8785499 TTGATTTAAGTGGTTTAATAATCTTATAAATAATTTTAAATA
129 TTGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATA
* * * *
8785541 AATTTTTTTTTCATTTTTGGTTTAAACAGATCACAATTGGATGTTTGCATAAGGAAACATGAAGC
1 AA-TTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCATTAGGAAACGTGAAGC
* * * * * *
8785606 GAAAGCTATCCGTTGACAAGAAAAGTCCATTTATATTAACTCATAG-CTTTGAAAACATTGTTAC
65 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT-GCCTTTGAAAGCCTTGTTAC
* * *
8785670 TCGCTTTAAATGGTTGTATAATCTTCTAAATGATTTTAAATTA
129 TTGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAA-TA
* * ** * *
8785713 ATATATTTTTT-ACTTTTGGTTAAAATTGATCATAATTGGCTGTTTGCATTGGGAAACGTGAAGC
1 A-ATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCATTAGGAAACGTGAAGC
* * * * * * *
8785777 -AAATGCCAT-CTTCTAACAAGAAAAGTTCATTCATAGTCACTCACGCCATCGAAAGCCTTGTTA
65 GAAA-GCCATCCAT-TGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTA
** * * * * *
8785840 CACGCTTTAAGTGGTCTTATTATCATATAAATGATTTTAAATTG
128 CTTGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAA-TA
* * * * * *
8785884 AA-TTATTTTCATTTTTAGTTAAAACAAATCATGATTTGATGTTTGCATTAGGAAACGTGAAGCA
1 AATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCATTAGGAAACGTGAAGCG
* * ** * * **
8785948 AAAGCCATCCATTGGA-AA-AAAAGTCTATATGCAGTCATTTATGCCTTTGAAAGCCTAATTAC-
66 AAAGCCATCCATT-GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACT
* * * *
8786010 T-CATTCTAAATAGTTTTATAATCTTATAAATGATTTCCAATTG
130 TGC-TT-TAAATGGTTTTATAATCTTATAAATGATTT-TAAATA
* * ** *
8786053 AATTTTTTGTCA-TCTTGGTTAAAACAGATTGTAGTTGGATGCTTT-CATTAGGAAACGTGAAGC
1 AATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATG-TTTGCATTAGGAAACGTGAAGC
* * * * * *
8786116 AAAAGCCATCCATGGAGAAGAAAAGTCCATTTATAGTCACTCATCCCATTAAAAGCCTTGTTACT
65 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACT
* *
8786181 TGCTTGAAATGGTTTTATAATCTTATAATTGATTTTAAATGA
130 TGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAAT-A
* ** ** ** * * * *
8786223 AAATCGTTTTCAACTTTGG-T----CCCA-CATAATTGGATGTTTACATTGGGAAATGTGAATAC
1 AATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCATTAGGAAACGTGAA-GC
* * * * * *
8786282 G-ATGCCATCCATTGACAAGAAAAGTCCATTTATAATCACTGATG-CTTTCAAAACCCTTATTAC
65 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTT-GAAAGCCTTGTTAC
** * * * * * *
8786345 TCACTTTAAGTGGCTTAATAATCTTATGAGTGATTTTAAGT-
129 TTGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATA
* * * * * *
8786386 ATTTTTTTTTAATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCGTAAGGAAACATGAAGTG
1 AATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCATTAGGAAACGTGAAGCG
* * ** * * * * * * *
8786451 GAAGCTATCTGTTGACAAGAAAAGTTCATTTATATTCACTAATGCCTTTAAAATCCTTATTACTC
66 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTT
* * * * *
8786516 GTTTTAAATGGTTCTATAATATTATAATTGATTTTAAAACA
131 GCTTTAAATGGTTTTATAATCTTATAAATGATTTT-AAATA
* ** *** *
8786557 ATATATTTTTTTC--TTTGGGTTAAAATTGATCATAATCAAATGTTTGCATTAGGAAACATGAAG
1 A-AT-TTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCATTAGGAAACGTGAAG
* * * * ** * * * * *
8786620 -TAGATGCCATCTTC-TT-ATAAAAAAAGTTTATTTATAGTCAATCATGTC-ATAAAATGCCTTC
64 CGA-AAGCCATC--CATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAA-GCCTTG
* * * * * *
8786681 TTACATGTTTTAAGTGGTTTTATTATCTTATAAATCATTTTAAATTG
125 TTACTTGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAA-TA
* * * * * * * *
8786728 AA-TTATTTTCATTTTTGATTAAAATAAATCATAATTTGATGTTTGCATTGGGAAATGTGAAGTG
1 AATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCATTAGGAAACGTGAAGCG
* * * *
8786792 AAAGCCATCCATT-AGC-AGAAAAAGTCCATATGTAGTCTCTCATGCCTTTGAAAGCCTAAG-TA
66 AAAGCCATCCATTGA-CAAG-AAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCT-TGTTA
* *** * *
8786854 CTCGGGCTAAATAGTTTTATAATCTTATAAATGATTTCT-AATC
128 CTTGCTTTAAATGGTTTTATAATCTTATAAATGATTT-TAAATA
* * * * *
8786897 AATTTTTTTTCATTCTTGGTTAAAAGAAATCATAATTGGATATTTGCATAAGGAAACGTGAAGC-
1 AATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCATTAGGAAACGTGAAGCG
* * * * * * * * * *
8786961 AGAAGCTATTCGTTAACAAGAAAAATCTATTTATATTCATTTATACCTTTGAAAGCCTTGTTA-T
66 A-AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACT
* * *
8787025 TCACTTTAAATGGTTGTATAATCTTATAACTGATTTTAAATCA
130 T-GCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAAT-A
* ** *
8787068 ATATATTGCTTTTTC--TTTTGGTTCAAATTGATCATAATTGGATGTTTGCATTTGGAAACGTGA
1 A-AT-TT--TTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCATTAGGAAACGTGA
* * * * ** * *
8787131 AGC-AGATGCCAT-CTTCTAATAAGAAAAGTCCATTTATAGTCACTCATGCAATAGAAAGCCTTA
62 AGCGA-AAGCCATCCAT-TGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTG
* * * * * * *
8787194 TTACATGGTTTAAGTGGTTTTCTTATCTTATACATGATTTTAAATTG
125 TTACTTGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAA-TA
* * * * * * *
8787241 AA-TTATTTTCATTTTTGGTTAAAACAAATCATAATTTGATGTTTGCATCAAGAAACATGAAGTG
1 AATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCATTAGGAAACGTGAAGCG
** * * * * ** * *
8787305 AAAGGTATCCATTGGCAAAAAAAGTCCATATATAGTCACTCATGCCTTTGAATGCCTAATCACTC
66 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTT
** * * ** *
8787370 GCGCTAAATGGCTTTATAGTCTTATAAATGATTTCCAATCG
131 GCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAAT-A
* * * * *
8787411 AATTGTTTTT-ATTCTTGGTTAAAAAAGATCATAATTGGATGTTTGCATTAGGAAACGTGAGGCA
1 AATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCATTAGGAAACGTGAAGCG
* * * *
8787475 AAAGCCATCCATTGAGAAGAAAAGTCCATTTATAGTCACTCATCCCATTAAAAGCCTTGTTACTT
66 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTT
*
8787540 GCTTTAAATGATTTTATAATCTTATAAATGATTTTAAATCA
131 GCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAAT-A
* ** * ** * * * *
8787581 AAATCATTTTCAATTTTGG-T----CCCA-CACAATTAGATGTTTGCATCAGGAAACATGAAGCA
1 AATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCATTAGGAAACGTGAAGC-
* * * *
8787640 GATA-CCATCTATTGACAAGAAAAGTTCATTTAT-GCTCACTAATGCCTTTGAAAGCCTTGTTA-
65 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAG-TCACTCATGCCTTTGAAAGCCTTGTTAC
* * * * *
8787702 TCTGCTCTAAGTGGTTTAAAAATCTTATAAATGATTTTGAATCA
129 T-TGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAAT-A
* * * * ** *
8787746 AATTTTTTTTCATTTCTAGTTAAGACATATCATAATTGGATGTTTGTGTAAGGAAACGTGAAGCG
1 AATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCATTAGGAAACGTGAAGCG
* * * * * * * *
8787811 AAAGCTATCCGTTAACAAGAAAAGTCCATTTATATTCACTCATACCTTCGAAACCCTTGTTACTC
66 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTT
* *** * * * *
8787876 ACTTTAAATGGCAGTATAATTTTCTAACTCATTTTAAATCA
131 GCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAAT-A
* * ** * * * * *
8787917 ATATATTTTTTC--TTTTGCTTAAAATTGATCATAATTGGATATTTACATTGGGAAACATAAAGC
1 A-ATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCATTAGGAAACGTGAAGC
* * * * * ** *
8787980 GGATGCCATCC-TCTAACAAGAAAAGTTCATTTATAGTCACTCATGCCATCAAAAGCATTGTTAC
65 GAAAGCCATCCAT-TGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTAC
** * * * *
8788044 ACGCTTTAAGTGGTTTTATTATCTTATAAATGATTTTAGATTG
129 TTGCTTTAAATGGTTTTATAATCTTATAAATGATTTTA-AATA
* * * *
8788087 AA-TTATTTTGATTTTTGGTTAAAACAAATCATAATTTGG-TGTTTGCATCCA-GAAACGTGAAG
1 AATTTTTTTTCATTTTTGGTTAAAACAGATCATAA-TTGGATGTTTGCAT-TAGGAAACGTGAAG
* * * * **
8788149 TGAAAGCCATGCATTGGCATA-AAAAGTCCATGTATAGTCACTCATGCC-TTGAAAAGCCTAATT
64 CGAAAGCCATCCATTGACA-AGAAAAGTCCATTTATAGTCACTCATGCCTTTG-AAAGCCTTGTT
** ** *
8788212 ACTTGCGCTAAATGGTTTTATAATCTTATAAATGATTTCCAATCG
127 ACTTGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAAT-A
* ** * * * * *
8788257 AATTTTTTTTCATTCTTATTTAAAACAAATCATAATTGGATGTTTGCTTTAGGAAATGTAAAGTG
1 AATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCATTAGGAAACGTGAAGCG
* ** * * * * * ** *
8788322 AAAGCCATCCATTGAGAAGAAAAAACCATTTATGGCCACTTATCCCATCAAAAGCCTTGTTTCTT
66 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTT
* **
8788387 GCTTTAAATAGTTTTATAATCTTATAAATGATTTTTGATCA
131 GCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAAT-A
* ** * ** * ** * * * **
8788428 AAATCATTTTCAATTTTGG-T----CCCA-CATAGTTAAATGTTTGCATCAAGAAACATGAA-AT
1 AATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCATTAGGAAACGTGAAGCG
* * * * *
8788486 AGATGCAATCCATTGACAAGAAAAGTTCATTTATA-CCACTCATGCCTTTGAAAGCCTTGTTACC
66 A-AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACT
* * * * * *
8788550 TACTCTAAGTGGTTTAATAATGTTATAAATGATTGTAAATTGA
130 TGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAA-T-A
* * * * * * *
8788593 AA--TTTTTTCATTTTTGGTTAAAACATATCATAATTGGATGTCTACATTGGGAAATGTGTAGTG
1 AATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCATTAGGAAACGTGAAGCG
* * * * * * * *
8788656 GAAGCCATCTAATGACAAGAAAAGTCCATATATAGTCACTCATACCTTCGAACGCCTTGTTAGTT
66 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTT
* ** * *
8788721 ACTTTAAATTATTTTATAATCTTATAAATTATTTTCAATCA
131 GCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAAT-A
* * ** ** * * * *
8788762 AA---ATTTT-ATTTGTTGTTTAAAATTGATCATAATTAAATGTTTGCATCAAGAAACGGGAAGT
1 AATTTTTTTTCATTT-TTGGTTAAAACAGATCATAATTGGATGTTTGCATTAGGAAACGTGAAGC
* * * * *
8788823 GGATGCCATCCATTGAGAAGAAAAGT-CATTTATAGTCACTTATG-CTATTGAAAGCCTTGTCAC
65 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCT-TTGAAAGCCTTGTTAC
* * *
8788886 TTGCATTAAATGCTTTTATAATCTTGTAAATGATTTTAAATTAA
129 TTGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAA-T-A
*
8788930 AATCTTTTTT-ATTTTT
1 AATTTTTTTTCATTTTT
8788946 AATGAAAAAC
Statistics
Matches: 2724, Mismatches: 717, Indels: 257
0.74 0.19 0.07
Matches are distributed among these distances:
163 24 0.01
164 67 0.02
165 412 0.15
166 14 0.01
167 66 0.02
168 92 0.03
169 295 0.11
170 930 0.34
171 653 0.24
172 33 0.01
173 130 0.05
174 2 0.00
175 6 0.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (170 bp):
AATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCATTAGGAAACGTGAAGCG
AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTT
GCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATA
Found at i:8787236 original size:513 final size:509
Alignment explanation
Indices: 8786357--8787590 Score: 1548
Period size: 513 Copynumber: 2.4 Consensus size: 509
8786347 ACTTTAAGTG
* * * * * *
8786357 GCTTAATAATCTTATGAGTGATTT-TAAGT-ATTTTTTTTTAATTTTTGGTTAAAACAGATCATA
1 GCTTTATAATCTTATAAATGATTTCTAA-TCAATTTTTTTT-ATTCTTGGTTAAAA-AAATCATA
* * **
8786420 ATTGGATGTTTGCGTAAGGAAACATGAAGTGGAAGCTA-TCTGTTGACAAGAAAAGT-TCATTTA
63 ATTGGATGTTTGCATAAGGAAACGTGAAGCAGAAGCTATTC-GTTGACAAGAAAAGTCT-ATTTA
* * * * * * *
8786483 TATTCACTAATGCCTTTAAAATCCTTATTACTCGTTTTAAATGGTTCTATAATATTATAATTGAT
126 TATTCACTAATACCTTTAAAAGCCTTGTTATTCGCTTTAAATGGTTCTATAATCTTATAAATGAT
*
8786548 TTTAAAACAATATATTTTTTTCTTTGGGTTAAAATTGATCATAATCAAATGTTTGCATTAGGAAA
191 TTTAAATCAATATATTTTTTTCTTTGGGTTAAAATTGATCATAATCAAATGTTTGCATTAGGAAA
* * **
8786613 CATGAAGTAGATGCCATCTTCTTATAAAAAAAGTTTATTTATAGTCAATCATGTCATAAAATGCC
256 CATGAAGCAGATGCCATCTTCTAATAAAAAAAGTCCATTTATAGTCAATCATGTCATAAAATGCC
* *
8786678 TTCTTACATGTTTTAAGTGGTTTTATTATCTTATAAATCATTTTAAATTGAATTATTTTCATTTT
321 TTATTACATGGTTTAAGTGGTTTTATTATCTTATAAATCATTTTAAATTGAATTATTTTCATTTT
* *** **
8786743 TGATTAAAATAAATCATAATTTGATGTTTGCATTGGGAAATGTGAAGTGAAAGCCATCCATTAGC
386 TGATTAAAACAAATCATAATTTGATGTTTGCATCAAGAAACATGAAGTGAAAGCCATCCATTAGC
* * * *
8786808 AGAAAAAGTCCATATGTAGTCTCTCATGCCTTTGAAAGCCTAAGT-ACTCGGGCTAAATA
451 AAAAAAAGTCCATATATAGTCACTCATGCCTTTGAAAGCCTAA-TCACTCGCGCTAAATA
*
8786867 GTTTTATAATCTTATAAATGATTTCTAATCAATTTTTTTTCATTCTTGGTTAAAAGAAATCATAA
1 GCTTTATAATCTTATAAATGATTTCTAATCAATTTTTTTT-ATTCTTGGTTAAAA-AAATCATAA
* * *
8786932 TTGGATATTTGCATAAGGAAACGTGAAGCAGAAGCTATTCGTTAACAAGAAAAATCTATTTATAT
64 TTGGATGTTTGCATAAGGAAACGTGAAGCAGAAGCTATTCGTTGACAAGAAAAGTCTATTTATAT
* * * * * *
8786997 TCATTTATACCTTTGAAAGCCTTGTTATTCACTTTAAATGGTTGTATAATCTTATAACTGATTTT
129 TCACTAATACCTTTAAAAGCCTTGTTATTCGCTTTAAATGGTTCTATAATCTTATAAATGATTTT
* * *** *
8787062 AAATCAATATATTGCTTTTTCTTTTGGTTCAAATTGATCATAATTGGATGTTTGCATTTGGAAAC
194 AAATCAATATATT--TTTTTCTTTGGGTTAAAATTGATCATAATCAAATGTTTGCATTAGGAAAC
* * *
8787127 GTGAAGCAGATGCCATCTTCTAATAAGAAAAGTCCATTTATAGTCACTCATG-CAATAGAAA-GC
257 ATGAAGCAGATGCCATCTTCTAATAAAAAAAGTCCATTTATAGTCAATCATGTC-ATA-AAATGC
* * *
8787190 CTTATTACATGGTTTAAGTGGTTTTCTTATCTTATACATGATTTTAAATTGAATTATTTTCATTT
320 CTTATTACATGGTTTAAGTGGTTTTATTATCTTATAAATCATTTTAAATTGAATTATTTTCATTT
* ** *
8787255 TTGGTTAAAACAAATCATAATTTGATGTTTGCATCAAGAAACATGAAGTGAAAGGTATCCATTGG
385 TTGATTAAAACAAATCATAATTTGATGTTTGCATCAAGAAACATGAAGTGAAAGCCATCCATTAG
* *
8787320 CAAAAAAAGTCCATATATAGTCACTCATGCCTTTGAATGCCTAATCACTCGCGCTAAATG
450 CAAAAAAAGTCCATATATAGTCACTCATGCCTTTGAAAGCCTAATCACTCGCGCTAAATA
* * *
8787380 GCTTTATAGTCTTATAAATGATTTCCAATCGAATTGTTTTTATTCTTGGTTAAAAAAGATCATAA
1 GCTTTATAATCTTATAAATGATTTCTAATC-AATTTTTTTTATTCTTGGTTAAAAAA-ATCATAA
* * * * * * * * *
8787445 TTGGATGTTTGCATTAGGAAACGTGAGGCAAAAGCCATCCATTGAGAAGAAAAGTCCATTTATAG
64 TTGGATGTTTGCATAAGGAAACGTGAAGCAGAAGCTATTCGTTGACAAGAAAAGTCTATTTATAT
* * * * *
8787510 TCACTCATCCCATTAAAAGCCTTGTTACTT-GCTTTAAATGATTTTATAATCTTATAAATGATTT
129 TCACTAATACCTTTAAAAGCCTTGTTA-TTCGCTTTAAATGGTTCTATAATCTTATAAATGATTT
*
8787574 TAAATCAAAATCATTTT
193 TAAATCAATAT-ATTTT
8787591 CAATTTTGGT
Statistics
Matches: 622, Mismatches: 89, Indels: 24
0.85 0.12 0.03
Matches are distributed among these distances:
510 21 0.03
511 151 0.24
512 9 0.01
513 424 0.68
514 17 0.03
ACGTcount: A:0.34, C:0.13, G:0.14, T:0.39
Consensus pattern (509 bp):
GCTTTATAATCTTATAAATGATTTCTAATCAATTTTTTTTATTCTTGGTTAAAAAAATCATAATT
GGATGTTTGCATAAGGAAACGTGAAGCAGAAGCTATTCGTTGACAAGAAAAGTCTATTTATATTC
ACTAATACCTTTAAAAGCCTTGTTATTCGCTTTAAATGGTTCTATAATCTTATAAATGATTTTAA
ATCAATATATTTTTTTCTTTGGGTTAAAATTGATCATAATCAAATGTTTGCATTAGGAAACATGA
AGCAGATGCCATCTTCTAATAAAAAAAGTCCATTTATAGTCAATCATGTCATAAAATGCCTTATT
ACATGGTTTAAGTGGTTTTATTATCTTATAAATCATTTTAAATTGAATTATTTTCATTTTTGATT
AAAACAAATCATAATTTGATGTTTGCATCAAGAAACATGAAGTGAAAGCCATCCATTAGCAAAAA
AAGTCCATATATAGTCACTCATGCCTTTGAAAGCCTAATCACTCGCGCTAAATA
Found at i:8788112 original size:846 final size:840
Alignment explanation
Indices: 8784576--8788765 Score: 3199
Period size: 846 Copynumber: 5.0 Consensus size: 840
8784566 AAATGTCTTG
*** * * * * *
8784576 TAATTGGATGTTTACATAAAGAAACATGAAGCAGATGGCATCTATTAACAACAAAAGTTCATTTT
1 TAATTGGATGTTTACATTGGGAAACATAAAGCAGATGCCATCCATTAACAAGAAAAGTCCA-TTT
* * * * *
8784641 ATAATCATTGATGCCTTCAAAAGCCTTATTACTCGCTTTAAGTGGTTTAATAATCTTATAAAT-A
65 ATAGTCACTCATGCCATCAAAAGCCTTATTACACGCTTTAAGTGGTTTAATAATCTTATAAATGA
** * ** *
8784705 GTTTTA-AGTCAAAATGT-TTTTCATTTTTCGCAAAAACAGATCATAATTGGATGTTTGCATAAG
130 -TTTTAGA-T-TGAAT-TATTTTCATTTTTGGTTAAAACAAATCATAATTGGATGTTTGCATAAG
* * * * * **
8784768 GAAACGTGAAGCGAAAGCTATCCGTTGACAAAAAAAGTCTATTTATATTCACTCATGCCTTCAAA
191 GAAACATGAAGTGAAAGCTATCCATTGACAAAAAAAGTCCATTTATAGTCACTCATGCCTTTGAA
* ** * * ** * * **
8784833 AACCTTGTTAGTCACTTTAAATGGTTGTATAATCTTGTAACCGATGTT-AAATC-AATA-TTTTT
256 AGCCTAATTACTCGCGCTAAATGGTTCTATAATCTTATAAATGAT-TTCAAATCGAATATTTTTT
* ** * ** * * *
8784895 T-TTCTTATAGTTAAAATTGATTATAATTGGATGTTTGCGCTGGGAAACGCGAAGCAAATGCCAT
320 TATTC-T-TGGTTAAAAAAGATCATAATTGGATGTTTGCATTAGGAAACGTGAAGCAAAAGCCAT
* * * * * * * * * * *
8784959 CCTTTAACAAGAAAAGTCTATTTATATTCACTTATGCCATCGAAAGGCTTGTTACACGCTTTAAG
383 CCATTGAGAAGAAAAGTCCATTTATAGTCACTCATCCCATCAAAAGCCTTGTTACATGCTTTAAA
* * ** ** * * * * *
8785024 TGGTTTTATTAT-TTATAAATGATTTTAAATTGAATTGTTTCCATTTTTGGTTAAAACAAATTAA
448 TGATTTTATAATCTTATAAATGATTTTAAATAAAATCATTTTCAATTTTGG-T---ACACA-CAC
* * ** ** * * *
8785088 AATTTGATGTCTGCATTGGGAAACATGAAGCA-AAAGCCATCCATTGGGAAAAAAAGTCCATATA
508 AATTAGATGTTTGCATCAGGAAACATGAAGCAGAAAGCCATCCATTGACAAGAAAAGTTCATTTA
* *
8785152 TAG-TCATTCATGCCTTTGAAAGCCTAATTA---CTC---AT-G---------C---TAAATGAT
573 T-GCTCACTCATGCCTTTGAAAGCCTAGTTACTGCTCTAAATAGTTTAATAATCTTATAAATGAT
* * * * * * *
8785197 TTCCAATCGAATTGTTTTTCATTCCTAGTTAAAACACATCATAATTGGATGTTTGTATCAGGAAA
637 TTTCAATCAAATTTTTTTTCATTTCTGGTTAAAACATATCATAATTGGATGTTTGTATAAGGAAA
* * * * * * *
8785262 CATGAAGCAACAGCCATCCTTTGAGAAGAAAAGTTCATTTATAATCACTCA-ACCCATCAAAAGC
702 CGTGAAGCAA-AGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATA-CCTTCGAAAGC
* * * * *
8785326 CTTGTTACTTGCTTTAAATGGTTTTATAATCTTCTAAATGATTTTAGATCAAAATCGTTTTCAAT
765 CTTGTTACTTACTTTAAATGGTTGTATAATCTTATAACTGATTTTAAATCAAAATCGTTTTC-AT
8785391 TTTGGTTCCACA
829 TTTGGTTCCACA
* * * * * * * * *
8785403 TAGTTGGATGTTTTCATTGAGAAACATGAAGTAGATGGCATCCATTGATAAGAAAAGTTCATTTA
1 TAATTGGATGTTTACATTGGGAAACATAAAGCAGATGCCATCCATTAACAAGAAAAGTCCATTTA
* * * ** * ** * *
8785468 TACTCACTTATGCCTTTGAAAGCCTTGTTACTTGATTTAAGTGGTTTAATAATCTTATAAATAAT
66 TAGTCACTCATGCCATCAAAAGCCTTATTACACGCTTTAAGTGGTTTAATAATCTTATAAATGAT
* * * * * *
8785533 TTTA-AATAAATTTTTTTTTCATTTTTGGTTTAAACAGATCACAATTGGATGTTTGCATAAGGAA
131 TTTAGATTGAA--TTATTTTCATTTTTGGTTAAAACAAATCATAATTGGATGTTTGCATAAGGAA
* * * * * *
8785597 ACATGAAGCGAAAGCTATCCGTTGACAAGAAAAGTCCATTTATATTAACTCATAG-CTTTGAAAA
194 ACATGAAGTGAAAGCTATCCATTGACAAAAAAAGTCCATTTATAGTCACTCAT-GCCTTTGAAAG
* ** ** * * * *
8785661 CATTGTTACTCGCTTTAAATGGTTGTATAATCTTCTAAATGATTTTAAAT-TAATATATTTTTTA
258 CCTAATTACTCGCGCTAAATGGTTCTATAATCTTATAAATGATTTCAAATCGAATAT-TTTTTTA
** * * * *
8785725 CTT-TTGGTTAAAATTGATCATAATTGGCTGTTTGCATTGGGAAACGTGAAGCAAATGCCAT-CT
322 -TTCTTGGTTAAAAAAGATCATAATTGGATGTTTGCATTAGGAAACGTGAAGCAAAAGCCATCCA
* * * * * * *
8785788 TCTAACAAGAAAAGTTCATTCATAGTCACTCA-CGCCATCGAAAGCCTTGTTACACGCTTTAAGT
386 T-TGAGAAGAAAAGTCCATTTATAGTCACTCATC-CCATCAAAAGCCTTGTTACATGCTTTAAAT
* * * * ** * * * * *
8785852 GGTCTTATTATCATATAAATGATTTTAAATTGAATTATTTTCATTTTTAGTTAAAACAAATCATG
449 GATTTTATAATCTTATAAATGATTTTAAATAAAATCATTTTCAATTTT-GGT-ACACACA-CA--
* * * *
8785917 ATTTGATGTTTGCATTAGGAAACGTGAAGCA-AAAGCCATCCATTGGA-AA-AAAAG-TC-TATA
509 ATTAGATGTTTGCATCAGGAAACATGAAGCAGAAAGCCATCCATT-GACAAGAAAAGTTCATTTA
* * * *
8785977 TGCAGTCATTTATGCCTTTGAAAGCCTAATTACT-CATTCTAAATAGTTTTATAATCTTATAAAT
573 TGC--TCACTCATGCCTTTGAAAGCCTAGTTACTGC--TCTAAATAGTTTAATAATCTTATAAAT
* ** * * * ** * * *
8786041 GATTTCCAATTGAATTTTTTGTCATCT-TGGTTAAAACAGATTGTAGTTGGATGCTTT-CATTAG
634 GATTTTCAATCAAATTTTTTTTCATTTCTGGTTAAAACATATCATAATTGGATG-TTTGTATAAG
* * * *
8786104 GAAACGTGAAGCAAAAGCCATCCATGGAGAAGAAAAGTCCATTTATAGTCACTCATCCCATT-AA
698 GAAACGTGAAGC-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATACC-TTCGA
* * * * *
8786168 AAGCCTTGTTACTTGCTTGAAATGGTTTTATAATCTTATAATTGATTTTAAATGAAAATCGTTTT
761 AAGCCTTGTTACTTACTTTAAATGGTTGTATAATCTTATAACTGATTTTAAATCAAAATCGTTTT
* *
8786233 CAACTTTGGTCCCACA
826 C-ATTTTGGTTCCACA
** *
8786249 TAATTGGATGTTTACATTGGGAAATGTGAATA-C-GATGCCATCCATTGACAAGAAAAGTCCATT
1 TAATTGGATGTTTACATTGGGAAACAT-AA-AGCAGATGCCATCCATTAACAAGAAAAGTCCATT
* * ** * * * * * *
8786312 TATAATCACTGATGCTTTCAAAACCCTTATTACTCACTTTAAGTGGCTTAATAATCTTATGAGTG
64 TATAGTCACTCATGCCATCAAAAGCCTTATTACACGCTTTAAGTGGTTTAATAATCTTATAAATG
* * * *
8786377 ATTTTAAGTATT---TTTTTTTAATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCGTAAGG
129 ATTTT-AG-ATTGAATTATTTTCATTTTTGGTTAAAACAAATCATAATTGGATGTTTGCATAAGG
* ** * * * * *
8786439 AAACATGAAGTGGAAGCTATCTGTTGACAAGAAAAGTTCATTTATATTCACTAATGCCTTTAAAA
192 AAACATGAAGTGAAAGCTATCCATTGACAAAAAAAGTCCATTTATAGTCACTCATGCCTTTGAAA
* * *** * * * * *
8786504 TCCTTATTACTCGTTTTAAATGGTTCTATAATATTATAATTGATTTTAAAAC-AATATATTTTT-
257 GCCTAATTACTCGCGCTAAATGGTTCTATAATCTTATAAATGATTTCAAATCGAATATTTTTTTA
** *** * * * *
8786567 TTCTTTGGGTTAAAATTGATCATAATCAAATGTTTGCATTAGGAAACATGAAGTAGATGCCATCT
322 TTC-TT-GGTTAAAAAAGATCATAATTGGATGTTTGCATTAGGAAACGTGAAGCAAAAGCCATC-
* * ** * ** * *
8786632 TC-TT-ATAAAAAAAGTTTATTTATAGTCAATCATGTCAT-AAAATGCCTTCTTACATGTTTTAA
384 -CATTGAGAAGAAAAGTCCATTTATAGTCACTCATCCCATCAAAA-GCCTTGTTACATGCTTTAA
* * * * ** * * * * *
8786694 GTGGTTTTATTATCTTATAAATCATTTTAAATTGAATTATTTTCATTTTTGATTAAAATAAATCA
447 ATGATTTTATAATCTTATAAATGATTTTAAATAAAATCATTTTCAATTTTG-GT---ACACA-CA
* * ** ** * *
8786759 TAATTTGATGTTTGCATTGGGAAATGTGAAG-TGAAAGCCATCCATT-AGC-AGAAAAAGTCCAT
507 CAATTAGATGTTTGCATCAGGAAACATGAAGCAGAAAGCCATCCATTGA-CAAG-AAAAGTTCAT
* ** *
8786821 ATGTA-G-TCTCTCATGCCTTTGAAAGCCTAAG-TACTCGGGCTAAATAGTTTTATAATCTTATA
570 -T-TATGCTCACTCATGCCTTTGAAAGCCT-AGTTACT-GCTCTAAATAGTTTAATAATCTTATA
* * * *
8786883 AATGA-TTTCTAATC-AATTTTTTTTCA-TTCTTGGTTAAAAGAAATCATAATTGGATATTTGCA
631 AATGATTTTC-AATCAAATTTTTTTTCATTTC-TGGTTAAAACATATCATAATTGGATGTTTGTA
* * * * * * * * *
8786945 TAAGGAAACGTGAAGCAGAAGCTATTCGTTAACAAGAAAAATCTATTTATATTCATTTATACCTT
694 TAAGGAAACGTGAAGCA-AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATACCTT
*
8787010 TGAAAGCCTTGTTA-TTCACTTTAAATGGTTGTATAATCTTATAACTGATTTTAAATCAATATAT
758 CGAAAGCCTTGTTACTT-ACTTTAAATGGTTGTATAATCTTATAACTGATTTTAAATCAA-A-A-
* *
8787074 TGCTTTTTC-TTTTGGTTCAAATTGATCA
819 T-CGTTTTCATTTTGGTTC-----CA-CA
* * * * * *
8787102 TAATTGGATGTTTGCATTTGGAAACGTGAAGCAGATGCCAT-CTTCTAATAAGAAAAGTCCATTT
1 TAATTGGATGTTTACATTGGGAAACATAAAGCAGATGCCATCCAT-TAACAAGAAAAGTCCATTT
* * * ** * *
8787166 ATAGTCACTCATGCAAT-AGAAAGCCTTATTACATGGTTTAAGTGGTTTTCTTATCTTATACATG
65 ATAGTCACTCATGCCATCA-AAAGCCTTATTACACGCTTTAAGTGGTTTAATAATCTTATAAATG
* *
8787230 ATTTTAAATTGAATTATTTTCATTTTTGGTTAAAACAAATCATAATTTGATGTTTGCATCAA-GA
129 ATTTTAGATTGAATTATTTTCATTTTTGGTTAAAACAAATCATAATTGGATGTTTGCAT-AAGGA
* * * *
8787294 AACATGAAGTGAAAGGTATCCATTGGCAAAAAAAGTCCATATATAGTCACTCATGCCTTTGAATG
193 AACATGAAGTGAAAGCTATCCATTGACAAAAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAG
* * * *
8787359 CCTAATCACTCGCGCTAAATGGCTT-TATAGTCTTATAAATGATTTCCAATCGAAT-TGTTTTTA
258 CCTAATTACTCGCGCTAAATGG-TTCTATAATCTTATAAATGATTTCAAATCGAATATTTTTTTA
*
8787422 TTCTTGGTTAAAAAAGATCATAATTGGATGTTTGCATTAGGAAACGTGAGGCAAAAGCCATCCAT
322 TTCTTGGTTAAAAAAGATCATAATTGGATGTTTGCATTAGGAAACGTGAAGCAAAAGCCATCCAT
* *
8787487 TGAGAAGAAAAGTCCATTTATAGTCACTCATCCCATTAAAAGCCTTGTTACTTGCTTTAAATGAT
387 TGAGAAGAAAAGTCCATTTATAGTCACTCATCCCATCAAAAGCCTTGTTACATGCTTTAAATGAT
*
8787552 TTTATAATCTTATAAATGATTTTAAATCAAAATCATTTTCAATTTTGGT-CCCACACAATTAGAT
452 TTTATAATCTTATAAATGATTTTAAAT-AAAATCATTTTCAATTTTGGTACACACACAATTAGAT
* *
8787616 GTTTGCATCAGGAAACATGAAGCAGATA-CCATCTATTGACAAGAAAAGTTCATTTATGCTCACT
516 GTTTGCATCAGGAAACATGAAGCAGAAAGCCATCCATTGACAAGAAAAGTTCATTTATGCTCACT
* * * * * *
8787680 AATGCCTTTGAAAGCCTTGTTATCTGCTCTAAGTGGTTTAAAAATCTTATAAATGATTTTGAATC
581 CATGCCTTTGAAAGCCTAGTTA-CTGCTCTAAATAGTTTAATAATCTTATAAATGATTTTCAATC
* * *
8787745 AAATTTTTTTTCATTTCTAGTTAAGACATATCATAATTGGATGTTTGTGTAAGGAAACGTGAAGC
645 AAATTTTTTTTCATTTCTGGTTAAAACATATCATAATTGGATGTTTGTATAAGGAAACGTGAAGC
* * * * *
8787810 GAAAGCTATCCGTTAACAAGAAAAGTCCATTTATATTCACTCATACCTTCGAAACCCTTGTTACT
710 -AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTCGAAAGCCTTGTTACT
* ** * * * * *
8787875 CACTTTAAATGGCAGTATAATTTTCTAACTCATTTTAAATCAATATAT-TTTTTC-TTTTGCTTA
774 TACTTTAAATGGTTGTATAATCTTATAACTGATTTTAAATCAA-A-ATCGTTTTCATTTTG-GT-
**
8787938 AAATTGATCA
835 ---TCCA-CA
* * *
8787948 TAATTGGATATTTACATTGGGAAACATAAAGCGGATGCCATCC-TCTAACAAGAAAAGTTCATTT
1 TAATTGGATGTTTACATTGGGAAACATAAAGCAGATGCCATCCAT-TAACAAGAAAAGTCCATTT
* * * *
8788012 ATAGTCACTCATGCCATCAAAAGCATTGTTACACGCTTTAAGTGGTTTTATTATCTTATAAATGA
65 ATAGTCACTCATGCCATCAAAAGCCTTATTACACGCTTTAAGTGGTTTAATAATCTTATAAATGA
* *
8788077 TTTTAGATTGAATTATTTTGATTTTTGGTTAAAACAAATCATAATTTGG-TGTTTGCATCCA-GA
130 TTTTAGATTGAATTATTTTCATTTTTGGTTAAAACAAATCATAA-TTGGATGTTTGCAT-AAGGA
* * * * * *
8788140 AACGTGAAGTGAAAGCCATGCATTGGCATAAAAAGTCCATGTATAGTCACTCATGCC-TTGAAAA
193 AACATGAAGTGAAAGCTATCCATTGACAAAAAAAGTCCATTTATAGTCACTCATGCCTTTG-AAA
* * *
8788204 GCCTAATTACTTGCGCTAAATGGTTTTATAATCTTATAAATGATTTCCAATCGAAT-TTTTTTTC
257 GCCTAATTACTCGCGCTAAATGGTTCTATAATCTTATAAATGATTTCAAATCGAATATTTTTTT-
** * * * **
8788268 ATTCTTATTTAAAACAA-ATCATAATTGGATGTTTGCTTTAGGAAATGTAAAGTGAAAGCCATCC
321 ATTCTTGGTTAAAA-AAGATCATAATTGGATGTTTGCATTAGGAAACGTGAAGCAAAAGCCATCC
** * * * * *
8788332 ATTGAGAAGAAAAAACCATTTATGGCCACTTATCCCATCAAAAGCCTTGTTTCTTGCTTTAAAT-
385 ATTGAGAAGAAAAGTCCATTTATAGTCACTCATCCCATCAAAAGCCTTGTTACATGCTTTAAATG
** * * *
8788396 AGTTTTATAATCTTATAAATGATTTTTGATCAAAATCATTTTCAATTTTGGT-CCCACATAGTTA
450 A-TTTTATAATCTTATAAATGATTTTAAAT-AAAATCATTTTCAATTTTGGTACACACACAATTA
* * ** * * *
8788460 AATGTTTGCATCAAGAAACATGAAATAG-ATGCAATCCATTGACAAGAAAAGTTCATTTATAC-C
513 GATGTTTGCATCAGGAAACATGAAGCAGAAAGCCATCCATTGACAAGAAAAGTTCATTTATGCTC
* * * * * * *
8788523 ACTCATGCCTTTGAAAGCCTTGTTACCTACTCTAAGTGGTTTAATAATGTTATAAATGATTGTAA
578 ACTCATGCCTTTGAAAGCCTAGTTA-CTGCTCTAAATAGTTTAATAATCTTATAAATGATTTTCA
* * * ** ** *
8788588 ATTGAAA--TTTTTTCATTTTTGGTTAAAACATATCATAATTGGATGTCTACATTGGGAAATGTG
642 A-TCAAATTTTTTTTCATTTCTGGTTAAAACATATCATAATTGGATGTTTGTATAAGGAAACGTG
* ** * * * *
8788651 TAGTGGAAGCCATCTAATGACAAGAAAAGTCCATATATAGTCACTCATACCTTCGAACGCCTTGT
706 AAG-CAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTCGAAAGCCTTGT
* ** * * * *
8788716 TAGTTACTTTAAATTATTTTATAATCTTATAAATTATTTTCAATCAAAAT
770 TACTTACTTTAAATGGTTGTATAATCTTATAACTGATTTTAAATCAAAAT
8788766 TTTATTTGTT
Statistics
Matches: 2792, Mismatches: 434, Indels: 258
0.80 0.12 0.07
Matches are distributed among these distances:
824 4 0.00
825 9 0.00
826 219 0.08
827 200 0.07
828 84 0.03
829 3 0.00
830 2 0.00
831 2 0.00
834 2 0.00
835 1 0.00
841 2 0.00
842 1 0.00
843 16 0.01
844 352 0.13
845 317 0.11
846 617 0.22
847 279 0.10
848 102 0.04
849 170 0.06
850 5 0.00
851 6 0.00
852 9 0.00
853 221 0.08
854 159 0.06
855 10 0.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.37
Consensus pattern (840 bp):
TAATTGGATGTTTACATTGGGAAACATAAAGCAGATGCCATCCATTAACAAGAAAAGTCCATTTA
TAGTCACTCATGCCATCAAAAGCCTTATTACACGCTTTAAGTGGTTTAATAATCTTATAAATGAT
TTTAGATTGAATTATTTTCATTTTTGGTTAAAACAAATCATAATTGGATGTTTGCATAAGGAAAC
ATGAAGTGAAAGCTATCCATTGACAAAAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCT
AATTACTCGCGCTAAATGGTTCTATAATCTTATAAATGATTTCAAATCGAATATTTTTTTATTCT
TGGTTAAAAAAGATCATAATTGGATGTTTGCATTAGGAAACGTGAAGCAAAAGCCATCCATTGAG
AAGAAAAGTCCATTTATAGTCACTCATCCCATCAAAAGCCTTGTTACATGCTTTAAATGATTTTA
TAATCTTATAAATGATTTTAAATAAAATCATTTTCAATTTTGGTACACACACAATTAGATGTTTG
CATCAGGAAACATGAAGCAGAAAGCCATCCATTGACAAGAAAAGTTCATTTATGCTCACTCATGC
CTTTGAAAGCCTAGTTACTGCTCTAAATAGTTTAATAATCTTATAAATGATTTTCAATCAAATTT
TTTTTCATTTCTGGTTAAAACATATCATAATTGGATGTTTGTATAAGGAAACGTGAAGCAAAGCC
ATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTCGAAAGCCTTGTTACTTACTTTA
AATGGTTGTATAATCTTATAACTGATTTTAAATCAAAATCGTTTTCATTTTGGTTCCACA
Found at i:8788507 original size:676 final size:668
Alignment explanation
Indices: 8785234--8788926 Score: 1806
Period size: 676 Copynumber: 5.5 Consensus size: 668
8785224 GTTAAAACAC
* * * ** * * * * *
8785234 ATCATAATTGGATGTTTGTATCAGGAAACATGAAG-CAACAGCCATCCTTTGAGAAGAAAAGTTC
1 ATCATAATTAGATGTTTGCATTAGGAAACATGAAGTGGA-TGCCATCCTCTAACAAAAAAAGTTC
* ** * ** * * *
8785298 ATTTATAATCACTCAACCCATCAAAAGCCTTGTTACTTGCTTTAAATGGTTTTATAATCTTCTAA
65 ATTTATAGTCACTCATGCCAT-AAAAGCCTTATTACACGCTTTAAGTGGTTTTATTATCTTATAA
** ** * ** * * *
8785363 ATGATTTTAGATCAAAATCGTTTTCAATTTTGGTT----CCA-CAT-AGTTGGATGTTTTCATTG
129 ATGATTTTA-AT-TGAATTATTTTCATTTTTGGTTAAAAAAATCATAATTTGG-TGTTTGCA-TC
* * * ** * * * * *
8785422 AGAAACATGAAGT-AGATGGCATCCATTGATAAGAAAAGTTCATTTATACTCACTTATGCCTTTG
190 AGAAACGTGAAGTGA-AAGCCATCCATTGGCAA-AAAAGTCCATATATAGTCACTCATGCCATTG
** *** * * * * *
8785486 -AAAGCCTTGTTACTTGATTTAAGTGGTTTAATAATCTTATAAATAATTTTAAATAAATTTTTTT
253 AAAAGCCTAATTACTTGCGCTAAATGGTTTTATAATCTTATAAATGATTTCAAATCAA-TTTTTT
* * * * * *
8785550 TTCATTTTTGGTTTAAACAGATCACAATTGGATGTTTGCATAAGGAAACATGAAGCGAAAGCTAT
317 TTCATTCTT-GTTAAAACAAATCATAATTGGATGTTTGCATAAGGAAACGTGAAG-GAAAGCCAT
* * *** * * * * *
8785615 CCGTTGACAAGAAAAGTCCATTTATATTAACTCATAGCTTTGAAAACATTGTTA-CTCGCTTTAA
380 CCATTGACAAGAAAAATCCATTTAT-GCCACTTATACCTTTGAAAGCCTTGTTATCTTGCTTTAA
* * ** * * * * * *
8785679 ATGGTTGTATAATCTTCTAAATGATTTTAAATTAATATATTTTTTACTTTTGGTTA-AAATTGAT
444 ATGGTTTTATAATCTTATAAATGATTTTTGATCAAAATCTTTTTCA-TTTTGG-TACACATAG-T
* ** * * * * *
8785743 CATAATTGGCTGTTTGCATTGGGAAACGTGAAGCAAATGCCAT-CTTCTAACAAGAAAAGTTCAT
506 -ATAA---GATGTTTGCA-TAAGAAACGTGAAACAGATGCAATCCAT-TAACAAGAAAAGTCCAT
* * * * * * * * *
8785807 TCATAGTCACTCACGCCATCGAAAGCCTTGTTACACGCTTTAAGTGG-TCT-TATTATCATATAA
565 TTATATTCACTCATGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTCTATAATAT--TATAA
* * * * ***
8785870 ATGATTTTAAATTGAAT-TATTTTCAT-TTTTAGTTAAAACAA
628 CTGATTTTAAA-TCAATATATTTT-TTCTTTTGGTTAAAATTG
* * * *** * **
8785911 ATCATGATTTGATGTTTGCATTAGGAAACGTGAAGCAAAAGCCATCCAT-T-GGAAAAAAAG-TC
1 ATCATAATTAGATGTTTGCATTAGGAAACATGAAGTGGATGCCATCC-TCTAACAAAAAAAGTTC
* * * * * * * * * * *
8785973 -TATATGCAGTCATTTATGCCTTTGAAAGCCTAATTACTC-ATTCTAAATAGTTTTATAATCTTA
65 ATTTAT--AGTCACTCATGCC-ATAAAAGCCTTATTACACGCTT-TAAGTGGTTTTATTATCTTA
* * * * ** *
8786036 TAAATGATTTCCAATTGAATTTTTTGTCA-TCTTGGTTAAAACAGATTGT-AGTTGGATGCTTT-
126 TAAATGATTT-TAATTGAATTATTT-TCATTTTTGGTTAAAA-AAATCATAATTTGG-TG-TTTG
* ** * * *
8786098 CATTAGGAAACGTGAAGCAAAAGCCATCCA-TGGAGAAGAAAAGTCCATTTATAGTCACTCATCC
186 CATCA-GAAACGTGAAGTGAAAGCCATCCATTGG-CAA-AAAAGTCCATATATAGTCACTCATGC
** * * * *
8786162 CATT-AAAAGCCTTGTTACTTGC-TTGAAATGGTTTTATAATCTTATAATTGATTTTAAATGAAA
248 CATTGAAAAGCCTAATTACTTGCGCT-AAATGGTTTTATAATCTTATAAATGATTTCAAAT-CAA
* ** * * ** * ** * *
8786225 ATCGTTTTCA-ACTTTGGT----CCCA-CATAATTGGATGTTTACATTGGGAAATGTGAA-TACG
311 TTTTTTTTCATTC-TTGTTAAAACAAATCATAATTGGATGTTTGCATAAGGAAACGTGAAGGA--
* * ** * * * * *
8786283 ATGCCATCCATTGACAAGAAAAGTCCATTTATAATCACTGAT-GCTTTCAAAACCCTTATTA-CT
373 AAGCCATCCATTGACAAGAAAAATCCATTTAT-GCCACTTATACCTTT-GAAAGCCTTGTTATCT
** * * * * * * ** * *
8786346 CACTTTAAGTGGCTTAATAATCTTATGAGTGA-TTTTAAGT--ATTTTTTTTTAATTTTTGGTTA
436 TGCTTTAAATGGTTTTATAATCTTATAAATGATTTTTGA-TCAAAATCTTTTTCA-TTTTGG-TA
* * * * *** * * ** *
8786408 -AAACAGATCATAATTGGATGTTTGCGTAAGGAAACATGAAGTGGAAGCTATCTGTTGACAAGAA
498 CACATAG-T-ATAA---GATGTTTGCATAA-GAAACGTGAAACAGATGCAATCCATTAACAAGAA
* * * * *
8786472 AAGTTCATTTATATTCACTAATGCCTTTAAAATCCTTATTACTCGTTTTAAATGGTTCTATAATA
557 AAGTCCATTTATATTCACTCATGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTCTATAATA
* * *
8786537 TTATAATTGATTTTAAAACAATATATTTTTTTCTTTGGGTTAAAATTG
622 TTATAACTGATTTTAAATCAATATA-TTTTTTCTTTTGGTTAAAATTG
* * * * * * *
8786585 ATCATAATCAAATGTTTGCATTAGGAAACATGAAGTAGATGCCATCTTCTTATAAAAAAAGTTTA
1 ATCATAATTAGATGTTTGCATTAGGAAACATGAAGTGGATGCCATCCTCTAACAAAAAAAGTTCA
* * * * *
8786650 TTTATAGTCAATCATGTCATAAAATGCCTTCTTACATGTTTTAAGTGGTTTTATTATCTTATAAA
66 TTTATAGTCACTCATGCCATAAAA-GCCTTATTACACGCTTTAAGTGGTTTTATTATCTTATAAA
* * * **
8786715 TCATTTTAAATTGAATTATTTTCATTTTTGATTAAAATAAATCATAATTTGATGTTTGCATTGGG
130 TGATTTT-AATTGAATTATTTTCATTTTTGGTTAAAA-AAATCATAATTTGGTGTTTGCA-TCAG
* * * * *
8786780 AAATGTGAAGTGAAAGCCATCCATTAGCAGAAAAAGTCCATATGTAGTCTCTCATGCCTTTG-AA
192 AAACGTGAAGTGAAAGCCATCCATTGGCA-AAAAAGTCCATATATAGTCACTCATGCCATTGAAA
* * * * *
8786844 AGCCTAAGTACTCGGGCTAAATAGTTTTATAATCTTATAAATGATTTCTAATCAATTTTTTTTCA
256 AGCCTAATTACTTGCGCTAAATGGTTTTATAATCTTATAAATGATTTCAAATCAATTTTTTTTCA
* * * * * *
8786909 TTCTTGGTTAAAAGAAATCATAATTGGATATTTGCATAAGGAAACGTGAAGCAGAAGCTATTCGT
321 TTCTT-GTTAAAACAAATCATAATTGGATGTTTGCATAAGGAAACGTGAAGGA-AAGCCATCCAT
* * ** * **
8786974 TAACAAGAAAAATCTATTTATATTCATTTATACCTTTGAAAGCCTTGTTAT-TCACTTTAAATGG
384 TGACAAGAAAAATCCATTTAT-GCCACTTATACCTTTGAAAGCCTTGTTATCTTGCTTTAAATGG
* * ** * * *
8787038 TTGTATAATCTTATAACTGATTTTAAATCAATATATTGCTTTTTC-TTTTGGTTCAAATTGATCA
448 TTTTATAATCTTATAAATGATTTTTGATCAA-A-A-T-CTTTTTCATTTTGGTACACATAG-T-A
** * * * *
8787102 TAATTGGATGTTTGCATTTGGAAACGTGAAGCAGATGCCAT-CTTCTAATAAGAAAAGTCCATTT
507 TAA---GATGTTTGCA-TAAGAAACGTGAAACAGATGCAATCCAT-TAACAAGAAAAGTCCATTT
* ** * * * * * * *
8787166 ATAGTCACTCATGCAATAGAAAGCCTTATTACAT-GGTTTAAGTGGTTTTCTTATCTTAT-ACAT
567 ATATTCACTCATGCCTTTGAAAGCCTTATTAC-TCGCTTTAAATGGTTCTATAATATTATAAC-T
* * ***
8787229 GATTTTAAATTGAAT-TATTTTCAT-TTTTGGTTAAAACAA
630 GATTTTAAA-TCAATATATTTT-TTCTTTTGGTTAAAATTG
* * * * * ** ** *
8787268 ATCATAATTTGATGTTTGCATCAAGAAACATGAAGTGAAAGGTATCCAT-TGGCAAAAAAAGTCC
1 ATCATAATTAGATGTTTGCATTAGGAAACATGAAGTGGATGCCATCC-TCTAACAAAAAAAGTTC
* * * * * * * ** * *
8787332 ATATATAGTCACTCATGCCTTTGAATGCCTAATCACTCGCGCTAAATGGCTTTA-TAGTCTTATA
65 ATTTATAGTCACTCATGCC-ATAAAAGCCTTATTACACGCTTTAAGTGGTTTTATTA-TCTTATA
* * * * * *
8787396 AATGATTTCCAATCGAATTGTTTTTATTCTTGGTTAAAAAAGATCATAA-TTGGATGTTTGCATT
128 AATGATTT-TAATTGAATTATTTTCATTTTTGGTTAAAAAA-ATCATAATTTGG-TGTTTGCATC
* ** * *
8787460 AGGAAACGTGAGGCAAAAGCCATCCATTGAG-AAGAAAAGTCCATTTATAGTCACTCATCCCATT
190 A-GAAACGTGAAGTGAAAGCCATCCATTG-GCAA-AAAAGTCCATATATAGTCACTCATGCCATT
** ** * * * **
8787524 -AAAAGCCTTGTTACTTGCTTTAAATGATTTTATAATCTTATAAATGATTTTAAATCAAAATCAT
252 GAAAAGCCTAATTACTTGCGCTAAATGGTTTTATAATCTTATAAATGATTTCAAATC-AATTTTT
* ** * * * * *
8787588 TTTCAATT-TTGGT----CCCA-CACAATTAGATGTTTGCATCAGGAAACATGAAGCAGATA-CC
316 TTTC-ATTCTTGTTAAAACAAATCATAATTGGATGTTTGCATAAGGAAACGTGAAG--GAAAGCC
* * * * * *
8787646 ATCTATTGACAAGAAAAGTTCATTTATGCTCACTAATGCCTTTGAAAGCCTTGTTATC-TGCTCT
378 ATCCATTGACAAGAAAAATCCATTTATGC-CACTTATACCTTTGAAAGCCTTGTTATCTTGCTTT
* * * * * * *
8787710 AAGTGGTTTAAAAATCTTATAAATGA-TTTTGAATCAAATTTTTTTTCATTTCTAGTTAAGACAT
442 AAATGGTTTTATAATCTTATAAATGATTTTTG-ATCAAAATCTTTTTCATTT-T-GGT-ACACAT
** * * * *
8787774 A-TCATAATTGGATGTTTGTGTAAGGAAACGTGAAGC-GAAAGCTATCCGTTAACAAGAAAAGTC
503 AGT-ATAA---GATGTTTGCATAA-GAAACGTGAAACAG-ATGCAATCCATTAACAAGAAAAGTC
* * * * * *** * *
8787837 CATTTATATTCACTCATACCTTCGAAACCCTTGTTACTCACTTTAAATGGCAGTATAATTTTCTA
562 CATTTATATTCACTCATGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTCTATAATATTATA
* *
8787902 ACTCATTTTAAATCAATATATTTTTTCTTTTGCTTAAAATTG
627 ACTGATTTTAAATCAATATATTTTTTCTTTTGGTTAAAATTG
* * * * * * *
8787944 ATCATAATTGGATATTTACATTGGGAAACATAAAGCGGATGCCATCCTCTAACAAGAAAAGTTCA
1 ATCATAATTAGATGTTTGCATTAGGAAACATGAAGTGGATGCCATCCTCTAACAAAAAAAGTTCA
* *
8788009 TTTATAGTCACTCATGCCATCAAAAGCATTGTTACACGCTTTAAGTGGTTTTATTATCTTATAAA
66 TTTATAGTCACTCATGCCAT-AAAAGCCTTATTACACGCTTTAAGTGGTTTTATTATCTTATAAA
*
8788074 TGATTTTAGATTGAATTATTTTGATTTTTGGTTAAAACAAATCATAATTTGGTGTTTGCATCCAG
130 TGATTTTA-ATTGAATTATTTTCATTTTTGGTTAAAA-AAATCATAATTTGGTGTTTGCAT-CAG
* *
8788139 AAACGTGAAGTGAAAGCCATGCATTGGCATAAAAAGTCCATGTATAGTCACTCATGCC-TTGAAA
192 AAACGTGAAGTGAAAGCCATCCATTGGCA-AAAAAGTCCATATATAGTCACTCATGCCATTGAAA
*
8788203 AGCCTAATTACTTGCGCTAAATGGTTTTATAATCTTATAAATGATTTCCAATCGAATTTTTTTTC
256 AGCCTAATTACTTGCGCTAAATGGTTTTATAATCTTATAAATGATTTCAAATC-AATTTTTTTTC
* * * * *
8788268 ATTCTTATTTAAAACAAATCATAATTGGATGTTTGCTTTAGGAAATGTAAAGTGAAAGCCATCCA
320 ATTCTT-GTTAAAACAAATCATAATTGGATGTTTGCATAAGGAAACGTGAAG-GAAAGCCATCCA
* * * * ** *
8788333 TTGAGAAGAAAAAACCATTTATGGCCACTTATCCCATCAAAAGCCTTGTT-TCTTGCTTTAAATA
383 TTGACAAGAAAAATCCATTTAT-GCCACTTATACCTTTGAAAGCCTTGTTATCTTGCTTTAAATG
* *
8788397 GTTTTATAATCTTATAAATGATTTTTGATCAAAATCATTTTCAATTTTGGTCCCACATAGT-TAA
447 GTTTTATAATCTTATAAATGATTTTTGATCAAAATCTTTTTC-ATTTTGGT-ACACATAGTATAA
* * * * *
8788461 -ATGTTTGCATCAAGAAACATGAAATAGATGCAATCCATTGACAAGAAAAGTTCATTTATA-CCA
510 GATGTTTGCAT-AAGAAACGTGAAACAGATGCAATCCATTAACAAGAAAAGTCCATTTATATTCA
* * * * * * *
8788524 CTCATGCCTTTGAAAGCCTTGTTAC-CTACTCTAAGTGGTT-TAATAATGTTATAAATGATTGTA
574 CTCATGCCTTTGAAAGCCTTATTACTC-GCTTTAAATGGTTCT-ATAATATTATAACTGATTTTA
** *
8788587 AATTGA-A-ATTTTTTCATTTTTGGTTAAAACAT-
637 AATCAATATATTTTTTC--TTTTGGTTAAAA-TTG
* * * * ** * * * * * *
8788619 ATCATAATTGGATGTCTACATTGGGAAATGTGTAGTGGAAGCCAT-CTAATGACAAGAAAAGTCC
1 ATCATAATTAGATGTTTGCATTAGGAAACATGAAGTGGATGCCATCCT-CTAACAAAAAAAGTTC
* * * * * * **** * ** *
8788683 ATATATAGTCACTCATACCTTCGAACGCCTTGTTAGTTACTTTAAATTATTTTATAATCTTATAA
65 ATTTATAGTCACTCATGCCAT-AAAAGCCTTATTACACGCTTTAAGTGGTTTTATTATCTTATAA
* * * * ** ***
8788748 ATTATTTTCAA-TCAA-AATTTT-ATTTGTTGTTTAAAATTGATCATAATTAAATGTTTGCATCA
129 ATGATTTT-AATTGAATTATTTTCATTT-TTGGTTAAAA-AAATCATAATTTGGTGTTTGCATC-
* * * * * *
8788810 AGAAACGGGAAGTGGATGCCATCCATTGAG-AAGAAAAGT-CATTTATAGTCACTTATGCTATTG
190 AGAAACGTGAAGTGAAAGCCATCCATTG-GCAA-AAAAGTCCATATATAGTCACTCATGCCATTG
** * ** * * *
8788873 -AAAGCCTTGTCACTTGCATTAAATGCTTTTATAATCTTGTAAATGATTTTAAAT
253 AAAAGCCTAATTACTTGCGCTAAATGGTTTTATAATCTTATAAATGATTTCAAAT
8788927 TAAAATCTTT
Statistics
Matches: 2315, Mismatches: 564, Indels: 279
0.73 0.18 0.09
Matches are distributed among these distances:
672 72 0.03
673 200 0.09
674 107 0.05
675 488 0.21
676 489 0.21
677 69 0.03
678 108 0.05
679 3 0.00
680 111 0.05
681 137 0.06
682 128 0.06
683 256 0.11
684 133 0.06
685 9 0.00
686 5 0.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (668 bp):
ATCATAATTAGATGTTTGCATTAGGAAACATGAAGTGGATGCCATCCTCTAACAAAAAAAGTTCA
TTTATAGTCACTCATGCCATAAAAGCCTTATTACACGCTTTAAGTGGTTTTATTATCTTATAAAT
GATTTTAATTGAATTATTTTCATTTTTGGTTAAAAAAATCATAATTTGGTGTTTGCATCAGAAAC
GTGAAGTGAAAGCCATCCATTGGCAAAAAAGTCCATATATAGTCACTCATGCCATTGAAAAGCCT
AATTACTTGCGCTAAATGGTTTTATAATCTTATAAATGATTTCAAATCAATTTTTTTTCATTCTT
GTTAAAACAAATCATAATTGGATGTTTGCATAAGGAAACGTGAAGGAAAGCCATCCATTGACAAG
AAAAATCCATTTATGCCACTTATACCTTTGAAAGCCTTGTTATCTTGCTTTAAATGGTTTTATAA
TCTTATAAATGATTTTTGATCAAAATCTTTTTCATTTTGGTACACATAGTATAAGATGTTTGCAT
AAGAAACGTGAAACAGATGCAATCCATTAACAAGAAAAGTCCATTTATATTCACTCATGCCTTTG
AAAGCCTTATTACTCGCTTTAAATGGTTCTATAATATTATAACTGATTTTAAATCAATATATTTT
TTCTTTTGGTTAAAATTG
Found at i:8791563 original size:35 final size:35
Alignment explanation
Indices: 8791437--8791556 Score: 125
Period size: 35 Copynumber: 3.5 Consensus size: 35
8791427 AATTTATGGG
* *
8791437 TGAAAGGAGCAGCTTTAGCTGCTGATTTTGAAGGC
1 TGAAAGGTGCAGTTTTAGCTGCTGATTTTGAAGGC
* * * * *
8791472 TGAAAAGTGCAATTTTCGCTACTGA-TTTGATGGC
1 TGAAAGGTGCAGTTTTAGCTGCTGATTTTGAAGGC
*** * *
8791506 TGAAAGGTATGGTTTTAGTTGCTGATTTTGAAAGC
1 TGAAAGGTGCAGTTTTAGCTGCTGATTTTGAAGGC
8791541 TGAAAGGTGCAGTTTT
1 TGAAAGGTGCAGTTTT
8791557 GGTTGCTAAT
Statistics
Matches: 64, Mismatches: 20, Indels: 2
0.74 0.23 0.02
Matches are distributed among these distances:
34 25 0.39
35 39 0.61
ACGTcount: A:0.26, C:0.11, G:0.28, T:0.35
Consensus pattern (35 bp):
TGAAAGGTGCAGTTTTAGCTGCTGATTTTGAAGGC
Found at i:8798056 original size:14 final size:15
Alignment explanation
Indices: 8798037--8798065 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
8798027 TGATAGTCTT
8798037 TCACCAAGT-CATAA
1 TCACCAAGTACATAA
8798051 TCACCAAGTACATAA
1 TCACCAAGTACATAA
8798066 GTACTTGGGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.45, C:0.28, G:0.07, T:0.21
Consensus pattern (15 bp):
TCACCAAGTACATAA
Found at i:8800290 original size:26 final size:26
Alignment explanation
Indices: 8800261--8800319 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
8800251 ATTTTCTAGT
* *
8800261 TTTCCTTTGT-TTTTCTCTTTTCTTCC
1 TTTCCTTTCTATTTTCTCTCTTCTT-C
* *
8800287 TTTCCTCTCTATTTTCTCTCTTGTTC
1 TTTCCTTTCTATTTTCTCTCTTCTTC
8800313 TTTCCTT
1 TTTCCTT
8800320 ATGGCCGGCC
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
26 15 0.56
27 12 0.44
ACGTcount: A:0.02, C:0.29, G:0.03, T:0.66
Consensus pattern (26 bp):
TTTCCTTTCTATTTTCTCTCTTCTTC
Found at i:8808963 original size:13 final size:13
Alignment explanation
Indices: 8808945--8808969 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8808935 TAATTTCGGC
8808945 CAAAACCTAAAAT
1 CAAAACCTAAAAT
8808958 CAAAACCTAAAA
1 CAAAACCTAAAA
8808970 ATTCCAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.24, G:0.00, T:0.12
Consensus pattern (13 bp):
CAAAACCTAAAAT
Found at i:8814397 original size:21 final size:21
Alignment explanation
Indices: 8814355--8814397 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
8814345 CCTATACCGG
*
8814355 TGGTGGAACTAAAGGAGTAAC
1 TGGTGGAACTAAAGGAGGAAC
* * *
8814376 TGGTGGTACTATAGGTGGAAC
1 TGGTGGAACTAAAGGAGGAAC
8814397 T
1 T
8814398 TGACTAATCT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.09, G:0.35, T:0.26
Consensus pattern (21 bp):
TGGTGGAACTAAAGGAGGAAC
Found at i:8819591 original size:26 final size:26
Alignment explanation
Indices: 8819562--8819620 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
8819552 ATTTTCTAGT
* *
8819562 TTTCCTTTGT-TTTTCTCTTTTCTTCC
1 TTTCCTTTCTATTTTCTCTCTTCTT-C
* *
8819588 TTTCCTCTCTATTTTCTCTCTTGTTC
1 TTTCCTTTCTATTTTCTCTCTTCTTC
8819614 TTTCCTT
1 TTTCCTT
8819621 ATGGCCGGCC
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
26 15 0.56
27 12 0.44
ACGTcount: A:0.02, C:0.29, G:0.03, T:0.66
Consensus pattern (26 bp):
TTTCCTTTCTATTTTCTCTCTTCTTC
Found at i:8821293 original size:141 final size:141
Alignment explanation
Indices: 8821058--8821317 Score: 328
Period size: 141 Copynumber: 1.8 Consensus size: 141
8821048 TTTTTTTTTG
*
8821058 TTTTTGGTTAATATCACTCATAATTGAATGTTTGCATCAACAAACGAGAAGCAAATGCCATCCAT
1 TTTTTGGTTAAAATCACTCATAATTGAATGTTTGCATCAACAAACGAGAAGCAAATGCCATCCAT
** *
8821123 TGGCAAGAAAAGTCCATCTATAGTAACTCATCCCATT-GATACCCTTGTTACTCACTTTTAAGTC
66 TAACAAGAAAAGTCCATCTATAGTAACTCATCCC-TTCGAAACCCTTGTTACTCACTTTTAAGTC
8821187 AAATGTTTTTCA
130 AAATGTTTTTCA
**** *
8821199 TTTTTGGTTAAAATCACTCATAATT-AGATGTTTGCATTGGTAAATC-AGAAGCCAATGCCATCC
1 TTTTTGGTTAAAATCACTCATAATTGA-ATGTTTGCATCAACAAA-CGAGAAGCAAATGCCATCC
* * * * * * *
8821262 ATTAATAAGAAAAGTCCATTTTTGGTCACTCATGCCTTCGAAAGCCTTGTTACTCA
64 ATTAACAAGAAAAGTCCATCTATAGTAACTCATCCCTTCGAAACCCTTGTTACTCA
8821318 GTTTAATTTG
Statistics
Matches: 100, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
140 3 0.03
141 96 0.96
142 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.34
Consensus pattern (141 bp):
TTTTTGGTTAAAATCACTCATAATTGAATGTTTGCATCAACAAACGAGAAGCAAATGCCATCCAT
TAACAAGAAAAGTCCATCTATAGTAACTCATCCCTTCGAAACCCTTGTTACTCACTTTTAAGTCA
AATGTTTTTCA
Found at i:8821481 original size:171 final size:171
Alignment explanation
Indices: 8821178--8823278 Score: 1288
Period size: 171 Copynumber: 12.3 Consensus size: 171
8821168 TGTTACTCAC
* * * *
8821178 TTTTAAGTC-AAATGTTTTTCATTTTTGGTTAAAATCA-CTCATAATTAGATGTTTGCATTG-GT
1 TTTTAAATCAAAATTTTTTTCA-TTTTGGTTAAAA-CAGATCATAATTGGATGTTTGCATTGAG-
* * * * * * * *
8821240 AAAT-CAGAAGCCAATGCCATCCATTAATAAGAAAAGTCCATTTTTGGTCACTCATGCCTTCGAA
63 AAATGTA-AAGCAAAAGCCATCAATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA
* * *
8821304 AGCCTTGTTACTCAG-TTTAATTTGTTTTATAATTTTATAAATGA
127 AGCCTTGTTACTCAGCTTTAAATGGTTTTATAATCTTATAAATGA
* * * * *
8821348 TTTGAAATCAAAATTTTTTTCATTTCTAGCTAAAACAAATCACAATTGGATGTTTGCATTGAGAA
1 TTTTAAATCAAAATTTTTTTCATTT-TGGTTAAAACAGATCATAATTGGATGTTTGCATTGAGAA
* * * * *
8821413 ATGTAAAGCAAAAGTCATCAATGGACAAGAAAAGTCTATTTATAGTCATTCATGCCTTCGACAGC
65 ATGTAAAGCAAAAGCCATCAATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGC
* * * * * *
8821478 CTTGTTA--CATGCTTTAATTGGTGTAATAATGTTATAACTTA
130 CTTGTTACTCA-GCTTTAAATGGTTTTATAATCTTATAAATGA
* * ** * * *
8821519 TTTTAAATCATAATATTTTTCATTTCTAATTAAAGCAGATCATAATTGGACGTTTGCATTGGAAA
1 TTTTAAATCAAAATTTTTTTCATTT-TGGTTAAAACAGATCATAATTGGATGTTTGCATT-GAGA
* * ** * *
8821584 ACATG--AAGCAAAAGCCATCCATTGAAAAGAAAAGTTCTTTTTATAATTACTCATGCCTTCGAA
64 A-ATGTAAAGCAAAAGCCATCAATTGACAAGAAAAG-TCCATTTATAGTCACTCATGCCTTCGAA
* * *
8821647 AGCCTTATTACTCA-CTTTAAATGATTTTATAATCTTATAAATTA
127 AGCCTTGTTACTCAGCTTTAAATGGTTTTATAATCTTATAAATGA
** ** * * * *
8821691 TTTTAACCCAAAATAGTTTTAATTTTTGTTTAAAATAGATCATAATTAGATGTTTGCATTGAGAA
1 TTTTAAATCAAAATTTTTTTCA-TTTTGGTTAAAACAGATCATAATTGGATGTTTGCATTGAGAA
** * * * * *
8821756 ACATAAAGCGAATATTGCC--C-ATTGAGAA-AGAAAGTCCATTTATATTCACTCATGCCATCAA
65 ATGTAAAGC-AA-A-AGCCATCAATTGACAAGA-AAAGTCCATTTATAGTCACTCATGCCTTCGA
** * *
8821817 AAGCCTTGTCGCTC-GCTTTAAATGGATTTAAAATCTTATAAATGA
126 AAGCCTTGTTACTCAGCTTTAAATGGTTTTATAATCTTATAAATGA
* * * ** * *
8821862 TTTTGAATCAAAATCTTTTTCATTTTTGCTTAAAATC-TCTCATAATTGGATGTTTACATT-ACA
1 TTTTAAATCAAAATTTTTTTCA-TTTTGGTTAAAA-CAGATCATAATTGGATGTTTGCATTGA-G
* ** * * * * * *
8821925 AAATATAAAGCGGATGACATCCACTGACAAGAAAAGTCCATTTATAGTCATTCATGGCTTCGAAA
63 AAATGTAAAGCAAAAGCCATCAATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA
* * * *
8821990 CCCTTGTTACTCA-CTTTAAGTGGTTTAATAATCTTATACATGA
128 GCCTTGTTACTCAGCTTTAAATGGTTTTATAATCTTATAAATGA
* ** * * *
8822033 TTTTAAATC--AATTGTTTTCATTTTTGGTTAAAATTGATCATAATTGGATGTTCGAATTAAG-A
1 TTTTAAATCAAAATTTTTTTCA-TTTTGGTTAAAACAGATCATAATTGGATGTTTGCATTGAGAA
* * * * * *
8822095 ATCGTGAAA-CAGAAA-CTATCCATTGACAAGAAAAGTCCATTTATATTAACTCAGGCCTAT-GT
65 AT-GT-AAAGCA-AAAGCCATCAATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCT-TCGA
* * * * *
8822157 AAGCCTAGTTGCTC-GCTTTAAATGGTTATATAATCGTATAATTGA
126 AAGCCTTGTTACTCAGCTTTAAATGGTTTTATAATCTTATAAATGA
* * * *
8822202 TTTTAAATCAAAATATTTTTCATTTTGGGTTAAAATCTA-A-CATAGTTGGATATTTGCATTGGG
1 TTTTAAATCAAAATTTTTTTCATTTT-GGTTAAAA-C-AGATCATAATTGGATGTTTGCATTGAG
* * * * * * *
8822265 AAACATG-AAATG--AATGCCATC-GTCTGACAAAACAAATTTCATTTATAGTAACTCATGCCAT
63 -AA-ATGTAAA-GCAAAAGCCATCAAT-TGACAAGA-AAAGTCCATTTATAGTCACTCATGCCTT
* * *
8822326 CGAAAGCCTTATTACT-TGCTTTAAGTGGTTTTATAATCTTATAAATGA
123 CGAAAGCCTTGTTACTCAGCTTTAAATGGTTTTATAATCTTATAAATGA
* * * * *
8822374 TTTTAAAT-AGAATTATTTTCATTTTTGGTTAAAA-TGTATCATAATTAGATGTTTACATTGAG-
1 TTTTAAATCAAAATTTTTTTCA-TTTTGGTTAAAACAG-ATCATAATTGGATGTTTGCATTGAGA
* * * * * * * *
8822436 AACGTGAAGCGAAAGCCTTTC-ACTGAGAAAAAAAGTCCATTTATAGTTACTCATGCCTTCGAAA
64 AATGTAAAGCAAAAGCC-ATCAATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA
* * *
8822500 G-CTTAATTACT-TGGTTTAAATGGTTTTATAATCTTATAAATGA
128 GCCTT-GTTACTCAGCTTTAAATGGTTTTATAATCTTATAAATGA
* *
8822543 TTTCT-AATC-AAATTTTTTTCATTTATGGTTAAAATAGATCATAATTGGATGTTTGCA-TCAGG
1 TTT-TAAATCAAAATTTTTTTCATTT-TGGTTAAAACAGATCATAATTGGATGTTTGCATTGA-G
** * * * * * * *
8822605 AAACATGAAGTAAAAGCCATCCATTGAGAAGAAAAGTCCATTTATAGACATTTAT-CTCATT-GA
63 AAATGTAAAGCAAAAGCCATCAATTGACAAGAAAAGTCCATTTATAGTCACTCATGC-C-TTCGA
* * **
8822668 AAGCCTTGTTACTTA-CTTTAAATGTTTTTATAATCTTGCAAATGA
126 AAGCCTTGTTACTCAGCTTTAAATGGTTTTATAATCTTATAAATGA
** * ** *
8822713 TTTTTTATCAAAATCTTTTTCACTTTTGGTTAAAATC-CCTCGTAATTGGATGTTTGCATT-AGG
1 TTTTAAATCAAAATTTTTTTCA-TTTTGGTTAAAA-CAGATCATAATTGGATGTTTGCATTGA-G
** * *** * * * * *
8822776 AAACATGAAGTGGATGCCATCCATTGAC-----AAGTCCATTTATAATCATTCATGCTTTCGAAA
63 AAATGTAAAGCAAAAGCCATCAATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA
* * * * * *
8822836 GCCTTGTTACT-TGCTCTAAGTAGTTTAATAATCTTACAAATGA
128 GCCTTGTTACTCAGCTTTAAATGGTTTTATAATCTTATAAATGA
* * * * * *
8822879 TATTAAACCAAAAATTTTTTCATTTCTAGTTAAAACATATCATAATTGGATGTTTGCATCGAGGA
1 TTTTAAATCAAAATTTTTTTCATTT-TGGTTAAAACAGATCATAATTGGATGTTTGCATTGA-GA
* * * ** * *
8822944 ACATG--AAGTAGAAGTCATCTTTTGACAAGGAAAGTCCATTTATAGTCACTTATGCCTTCGAAA
64 A-ATGTAAAGCAAAAGCCATCAATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA
** * *
8823007 GCCTTGTTA-TTTGCTTTAAATTGTTTTATAATCTTATAAATTA
128 GCCTTGTTACTCAGCTTTAAATGGTTTTATAATCTTATAAATGA
* ** ** ** ** *
8823050 TTTTAAATTAAAA-TAGTTTCATTTTTATGTAAAGTAGATCATAATTAAATGTTTGCATCGAGAA
1 TTTTAAATCAAAATTTTTTTCATTTTGGT-TAAAACAGATCATAATTGGATGTTTGCATTGAGAA
* * * * * * * * * *
8823114 ATATGAAA-CAGATGTCATTC-ATTGAGAAGAAAAGTCTATTTATAGTCTCTAAAGCCATCGAAA
65 ATGT-AAAGCAAAAGCCA-TCAATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA
* ** ** *
8823177 G-C-TG-TA-TCATTTGCATTAAATCCTTTTATAATCCAATGAATGA
128 GCCTTGTTACTCA---GCTTTAAATGGTTTTATAATCTTATAAATGA
* * * **
8823220 TTTTAAATTAAAATGTGTTTT-ATTTTTGTTGAAAAGC-CCTCATAATTGGATGTTTGCAT
1 TTTTAAATCAAAAT-TTTTTTCATTTTGGTT-AAAA-CAGATCATAATTGGATGTTTGCAT
8823279 CAAGAAACAC
Statistics
Matches: 1524, Mismatches: 308, Indels: 197
0.75 0.15 0.10
Matches are distributed among these distances:
165 6 0.00
166 117 0.08
167 9 0.01
168 22 0.01
169 247 0.16
170 246 0.16
171 654 0.43
172 204 0.13
173 11 0.01
174 5 0.00
175 3 0.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (171 bp):
TTTTAAATCAAAATTTTTTTCATTTTGGTTAAAACAGATCATAATTGGATGTTTGCATTGAGAAA
TGTAAAGCAAAAGCCATCAATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCC
TTGTTACTCAGCTTTAAATGGTTTTATAATCTTATAAATGA
Found at i:8822173 original size:340 final size:339
Alignment explanation
Indices: 8821178--8823113 Score: 1512
Period size: 340 Copynumber: 5.7 Consensus size: 339
8821168 TGTTACTCAC
* * *
8821178 TTTTAAGTC-AAATGTTTTTCATTTTTGGTTAAAATC-ACTCATAATTAGATGTTTGCATTGGTA
1 TTTTAAATCAAAATATTTTTCATTTTTGGTTAAAATCGA-TCATAATTGGATGTTTGCATTGG-A
* * * * * *
8821241 AATCA-GAAGCCAATGCCATCCATTAATAAGAAAAGTCCATTTTTGGTCACTCATGCCTTCGAAA
64 AAACATGAAGCAAATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA
* * * * * *
8821305 GCCTTGTTACTCAGTTTAATTTGTTTTATAATTTTATAAATGATTTGAAATCAAAATTTTTTTCA
129 GCCTTGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATC-AAATTGTTTTCA
* * * * * * * * * *
8821370 TTTCTAGCTAAAACAAATCACAATTGGATGTTTGCATTGAGAAAT-GTAAAGCAAAAGTCATCAA
193 TTTTTGGTTAAAATAGATCATAATTGGATGTTTGAATTGAG-AATCGTAAAGCGAAACT-ATCCA
* * * * * * *
8821434 TGGACAAGAAAAGTCTATTTATAGTCATTCATGCCTTCGACAGCCTTGTTACAT-GCTTTAATTG
256 TTGACAAGAAAAGTCCATTTATATTCACTCATGCCTTCGAAAGCCTAGTTAC-TCGCTTTAAATG
* * * *
8821498 GTGTAATAATGTTATAACTTA
320 GTTTAA-AATCTTATAAATGA
* * ** * *
8821519 TTTTAAATCATAATATTTTTCATTTCTAATT-AAAGCAGATCATAATTGGACGTTTGCATTGGAA
1 TTTTAAATCAAAATATTTTTCATTTTTGGTTAAAATC-GATCATAATTGGATGTTTGCATTGGAA
* * ** * *
8821583 AACATGAAGCAAAAGCCATCCATTGAAAAGAAAAGTTCTTTTTATAATTACTCATGCCTTCGAAA
65 AACATGAAGCAAATGCCATCCATTGACAAGAAAAG-TCCATTTATAGTCACTCATGCCTTCGAAA
* * * ** * *
8821648 GCCTTATTACTCACTTTAAATGATTTTATAATCTTATAAATTATTTTAACCCAAAATAGTTTTAA
129 GCCTTGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATC-AAATTGTTTTCA
* * * * * * **
8821713 TTTTTGTTTAAAATAGATCATAATTAGATGTTTGCATTGAGAAACATAAAGCGAATATTGCCCAT
193 TTTTTGGTTAAAATAGATCATAATTGGATGTTTGAATTGAGAATCGTAAAGCGAA-ACTATCCAT
* * * * **
8821778 TGAGAA-AGAAAGTCCATTTATATTCACTCATGCCATCAAAAGCCTTGTCGCTCGCTTTAAATGG
257 TGACAAGA-AAAGTCCATTTATATTCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGG
8821842 ATTTAAAATCTTATAAATGA
321 -TTTAAAATCTTATAAATGA
* * * ** * **
8821862 TTTTGAATCAAAATCTTTTTCATTTTTGCTTAAAATCTCTCATAATTGGATGTTTACATTACAAA
1 TTTTAAATCAAAATATTTTTCATTTTTGGTTAAAATCGATCATAATTGGATGTTTGCATTGGAAA
* * ** * * * * *
8821927 ATATAAAGCGGATGACATCCACTGACAAGAAAAGTCCATTTATAGTCATTCATGGCTTCGAAACC
66 ACATGAAGCAAATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGC
* * *
8821992 CTTGTTACTCACTTTAAGTGGTTTAATAATCTTATACATGATTTTAAATC-AATTGTTTTCATTT
131 CTTGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAATTGTTTTCATTT
* * *
8822056 TTGGTTAAAATTGATCATAATTGGATGTTCGAATTAAGAATCGTGAAA-CAGAAACTATCCATTG
196 TTGGTTAAAATAGATCATAATTGGATGTTTGAATTGAGAATCGT-AAAGC-GAAACTATCCATTG
* * * *
8822120 ACAAGAAAAGTCCATTTATATTAACTCAGGCCTAT-GTAAGCCTAGTTGCTCGCTTTAAATGGTT
259 ACAAGAAAAGTCCATTTATATTCACTCATGCCT-TCGAAAGCCTAGTTACTCGCTTTAAATGGTT
* * *
8822184 ATATAATCGTATAATTGA
323 -TAAAATCTTATAAATGA
* * * * * *
8822202 TTTTAAATCAAAATATTTTTCATTTTGGGTTAAAATCTAACATAGTTGGATATTTGCATTGGGAA
1 TTTTAAATCAAAATATTTTTCATTTTTGGTTAAAATCGATCATAATTGGATGTTTGCATTGGAAA
*** * * * * * *
8822267 ACATGAAATGAATGCCAT-CGTCTGACAAAACAAATTTCATTTATAGTAACTCATGCCATCGAAA
66 ACATGAAGCAAATGCCATCCAT-TGACAAGA-AAAGTCCATTTATAGTCACTCATGCCTTCGAAA
* ** * *
8822331 GCCTTATTACTTGCTTTAAGTGGTTTTATAATCTTATAAATGATTTTAAAT-AGAATTATTTTCA
129 GCCTTGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCA-AATTGTTTTCA
* * *
8822395 TTTTTGGTTAAAAT-GTATCATAATTAGATGTTT-ACATTGAGAA-CGTGAAGCGAAAGCCT-TT
193 TTTTTGGTTAAAATAG-ATCATAATTGGATGTTTGA-ATTGAGAATCGTAAAGCGAAA--CTATC
* * * * * * *
8822456 CACTGAGAAAAAAAGTCCATTTATAGTT-ACTCATGCCTTCGAAAGCTTAATTACTTGGTTTAAA
254 CATTGACAAGAAAAGTCCATTTATA-TTCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAA
*
8822520 TGGTTTTATAATCTTATAAATGA
318 TGG-TTTAAAATCTTATAAATGA
* * * *
8822543 TTTCT-AATC-AAATTTTTTTCATTTATGGTTAAAATAGATCATAATTGGATGTTTGCATCAGG-
1 TTT-TAAATCAAAATATTTTTCATTTTTGGTTAAAATCGATCATAATTGGATGTTTGCAT-TGGA
* * * * * *
8822605 AAACATGAAGTAAAAGCCATCCATTGAGAAGAAAAGTCCATTTATAGACATTTAT-CTCATT-GA
64 AAACATGAAGCAAATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC-C-TTCGA
* * ** **
8822668 AAGCCTTGTTACTTACTTTAAATGTTTTTATAATCTTGCAAATGATTTTTTATCAAAATCT-TTT
127 AAGCCTTGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATC-AAAT-TGTTT
* *** * * * * * * ** *
8822732 TCACTTTTGGTTAAAATCCCTCGTAATTGGATGTTTGCATT-AGGAAACATGAAGTGGATGCCAT
190 TCATTTTTGGTTAAAATAGATCATAATTGGATGTTTGAATTGA-GAATCGTAAAG-CGAAACTAT
* * * * * * *
8822796 CCATTGAC-----AAGTCCATTTATAATCATTCATGCTTTCGAAAGCCTTGTTACTTGCTCTAAG
253 CCATTGACAAGAAAAGTCCATTTATATTCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAA
* *
8822856 TAGTTTAATAATCTTACAAATGA
318 TGGTTTAA-AATCTTATAAATGA
* * * * * *
8822879 TATTAAACCAAAA-ATTTTTTCATTTCTAGTTAAAA-CATATCATAATTGGATGTTTGCA-TCGA
1 TTTTAAATCAAAATA-TTTTTCATTTTTGGTTAAAATC-GATCATAATTGGATGTTTGCATTGGA
* * * ** * *
8822941 GGAACATGAAGTAGAA-GTCATCTTTTGACAAGGAAAGTCCATTTATAGTCACTTATGCCTTCGA
64 -AAACATGAAGCA-AATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGA
* ** * * * *
8823005 AAGCCTTGTTATTTGCTTTAAATTGTTTTATAATCTTATAAATTATTTTAAATTAAAATAG-TTT
127 AAGCCTTGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAA-TCAAATTGTTTT
* * ** * *
8823069 CATTTTT-ATGTAAAGTAGATCATAATTAAATGTTTGCATCGAGAA
191 CATTTTTGGT-TAAAATAGATCATAATTGGATGTTTGAATTGAGAA
8823114 ATATGAAACA
Statistics
Matches: 1270, Mismatches: 268, Indels: 119
0.77 0.16 0.07
Matches are distributed among these distances:
335 8 0.01
336 97 0.08
337 136 0.11
338 5 0.00
339 69 0.05
340 308 0.24
341 196 0.15
342 188 0.15
343 253 0.20
344 10 0.01
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (339 bp):
TTTTAAATCAAAATATTTTTCATTTTTGGTTAAAATCGATCATAATTGGATGTTTGCATTGGAAA
ACATGAAGCAAATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGC
CTTGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAATTGTTTTCATTT
TTGGTTAAAATAGATCATAATTGGATGTTTGAATTGAGAATCGTAAAGCGAAACTATCCATTGAC
AAGAAAAGTCCATTTATATTCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGTTTAA
AATCTTATAAATGA
Found at i:8822564 original size:511 final size:502
Alignment explanation
Indices: 8821178--8823158 Score: 1412
Period size: 511 Copynumber: 3.9 Consensus size: 502
8821168 TGTTACTCAC
* * * * * *
8821178 TTTTAAGTC-AAATGTTTTTCATTTTTGGTTAAAAT-CACTCATAATTAGATGTTTGCATT-GGT
1 TTTTAAATCAAAATATTTTTCACTTTTGGTTAAAATCCA-ACATAATTGGATATTTGCATTAGG-
*** * * ** *
8821240 AAATCA-GAAGCCAATGCCATCCATTAATAAGAAAAGTCCATTTTTGGTCACTCATGCCTTCGAA
64 AAA-CATGAAATGAATGCCATCCA-T--T--GACAAGTCCATTTATAATCACTCATGCCATCGAA
* * * * *
8821304 AGCCTTGTTACTCAG-TTTAATTTGTTTTATAATTTTATAAATGATTTGAAATCAAAATTTTTTT
123 AGCCTTGTTACT-TGCTTTAAGTGGTTTTATAATCTTATAAATGATTTTAAAT-AAAA-TTTTTT
* * * * * * * * * *
8821368 CATTTCTAGCTAAAACAAATCACAATTGGATGTTTGCATTGAGAA-ATGTAAAGCAAAAGTC-AT
185 CATTTTTGGTTAAAATATATCATAATTGGATGTTTACATTGAGAACATG--AAGCGAAAGCCTTT
* * * * * *
8821431 CAATGGACAAGAAAAGTCTATTTATAGTCATTCATGCCTTCGACAGCCTTGTTACATGCTTTAAT
248 CACT-GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAG-CTTGTTACTTGCTTTAAA
* * * * * * ** **
8821496 TGGTGTAATAATGTTATAACTTATTTTAAATCATAATAT-TTTTCATTTCTAATTAAAGCAGATC
311 TGGTTTTATAATCTTATAAATGATTTTAAATC--AAT-TGTTTTCATTTATGGTTAAAATAGATC
* * * ** * * **
8821560 ATAATTGGACGTTTGCAT-TGGAAAACATGAAGCAAAAGCCATCCATTGAAAAGAAAAGTTCTTT
373 ATAATTGGATGTTCGAATCAAG-AAACATGAAACAAAAGCCATCCATTGACAAGAAAAG-TCCAT
* * * * * *
8821624 TTATA-ATTACTCATGCCT--TCGAAAGCCTTA-TTACTCACTTTAAATGATTTTATAATCTTAT
436 TTATAGA-CACTCA--CCTCATTGAAAGCC-TAGTTACTCACTTTAAATGGTTATATAATCGTAC
*
8821685 AAATTA
497 AAATGA
** * * * * ** * * *
8821691 TTTTAACCCAAAATAGTTTTAATTTTTGTTTAAAATAGATCATAATTAGATGTTTGCATT-GAGA
1 TTTTAAATCAAAATATTTTTCACTTTTGGTTAAAATCCAACATAATTGGATATTTGCATTAG-GA
* ** ** * *
8821755 AACAT-AAAGCGAATATTGCCCATTGAGAAAGA-AAGTCCATTTATATTCACTCATGCCATCAAA
65 AACATGAAA-TG-A-A-TG-CCA-T-CCATTGACAAGTCCATTTATAATCACTCATGCCATCGAA
** * * * * *
8821818 AGCCTTGTCGCTCGCTTTAAATGGATTTAAAATCTTATAAATGATTTTGAATCAAAATCTTTTTC
123 AGCCTTGTTACTTGCTTTAAGTGGTTTTATAATCTTATAAATGATTTTAAAT-AAAAT-TTTTTC
* * * * * * * * * * * *
8821883 ATTTTTGCTTAAAATCTCTCATAATTGGATGTTTACATTACAAAATATAAAGCGGATGACATCCA
186 ATTTTTGGTTAAAATATATCATAATTGGATGTTTACATT-GAGAACATGAAGCGAAAGCCTTTCA
* * * ** *
8821948 CTGACAAGAAAAGTCCATTTATAGTCATTCATGGCTTCGAAACCCTTGTTACTCACTTTAAGTGG
250 CTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA-GCTTGTTACTTGCTTTAAATGG
* * * *
8822013 TTTAATAATCTTATACATGATTTTAAATCAATTGTTTTCATTTTTGGTTAAAATTGATCATAATT
314 TTTTATAATCTTATAAATGATTTTAAATCAATTGTTTTCATTTATGGTTAAAATAGATCATAATT
* * * * *
8822078 GGATGTTCGAATTAAGAATCGTGAAACAGAAA-CTATCCATTGACAAGAAAAGTCCATTTATATT
379 GGATGTTCGAATCAAGAAACATGAAACA-AAAGCCATCCATTGACAAGAAAAGTCCATTTATA-G
* * * * *
8822142 A-ACTCAGGCCT-A-TGTAAGCCTAGTTGCTCGCTTTAAATGGTTATATAATCGTATAATTGA
442 ACACTCA--CCTCATTGAAAGCCTAGTTACTCACTTTAAATGGTTATATAATCGTACAAATGA
* * *
8822202 TTTTAAATCAAAATATTTTTCA-TTTTGGGTTAAAATCTAACATAGTTGGATATTTGCATTGGGA
1 TTTTAAATCAAAATATTTTTCACTTTT-GGTTAAAATCCAACATAATTGGATATTTGCATTAGGA
* * * * *
8822266 AACATGAAATGAATGCCAT-CGTCTGACAAAACAAATTTCATTTATAGTAACTCATGCCATCGAA
65 AACATGAAATGAATGCCATCCAT-TG-----AC-AAGTCCATTTATAATCACTCATGCCATCGAA
* *
8822330 AGCCTTATTACTTGCTTTAAGTGGTTTTATAATCTTATAAATGATTTTAAATAGAATTATTTTCA
123 AGCCTTGTTACTTGCTTTAAGTGGTTTTATAATCTTATAAATGATTTTAAATAAAATT-TTTTCA
* * *
8822395 TTTTTGGTTAAAATGTATCATAATTAGATGTTTACATTGAGAACGTGAAGCGAAAGCCTTTCACT
187 TTTTTGGTTAAAATATATCATAATTGGATGTTTACATTGAGAACATGAAGCGAAAGCCTTTCACT
* * * * *
8822460 GAGAAAAAAAGTCCATTTATAGTTACTCATGCCTTCGAAAGCTTAATTACTTGGTTTAAATGGTT
252 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCTT-GTTACTTGCTTTAAATGGTT
*
8822525 TTATAATCTTATAAATGATTTCT-AATCAAATTTTTTTCATTTATGGTTAAAATAGATCATAATT
316 TTATAATCTTATAAATGATTT-TAAATC-AATTGTTTTCATTTATGGTTAAAATAGATCATAATT
* * * ** *
8822589 GGATGTTTGCATCAGGAAACATGAAGTAAAAGCCATCCATTGAGAAGAAAAGTCCATTTATAGAC
379 GGATGTTCGAATCAAGAAACATGAAACAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGAC
* * * * * * * * *
8822654 ATTTATCTCATTGAAAGCCTTGTTACTTACTTTAAATGTTTTTATAATCTTGCAAATGA
444 ACTCACCTCATTGAAAGCCTAGTTACTCACTTTAAATGGTTATATAATCGTACAAATGA
** * ** * *
8822713 TTTTTTATCAAAATCTTTTTCACTTTTGGTTAAAATCCCTCGTAATTGGATGTTTGCATTAGGAA
1 TTTTAAATCAAAATATTTTTCACTTTTGGTTAAAATCCAACATAATTGGATATTTGCATTAGGAA
* * * **
8822778 ACATGAAGTGGATGCCATCCATTGACAAGTCCATTTATAATCATTCATGCTTTCGAAAGCCTTGT
66 ACATGAAATGAATGCCATCCATTGACAAGTCCATTTATAATCACTCATGCCATCGAAAGCCTTGT
* * * * * * * *
8822843 TACTTGCTCTAAGTAGTTTAATAATCTTACAAATGATATTAAACCAAAAATTTTTTCATTTCTAG
131 TACTTGCTTTAAGTGGTTTTATAATCTTATAAATGATTTTAAA--TAAAATTTTTTCATTTTTGG
* * * *
8822908 TTAAAACATATCATAATTGGATGTTTGCATCGAGGAACATGAAG-TAGAAGTCATCTTT---TGA
194 TTAAAATATATCATAATTGGATGTTTACATTGA-GAACATGAAGCGA-AAG-C--CTTTCACTGA
* * * *
8822969 CAAGGAAAGTCCATTTATAGTCACTTATGCCTTCGAAAGCCTTGTTATTTGCTTTAAATTGTTTT
254 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAG-CTTGTTACTTGCTTTAAATGGTTTT
* * * *
8823034 ATAATCTTATAAATTATTTTAAATTAAAATAG-TTTCATTTTTAT-G-TAAAGTAGATCATAATT
318 ATAATCTTATAAATGATTTTAAA-T-CAATTGTTTTCA--TTTATGGTTAAAATAGATCATAATT
** * * * * * * * * * *
8823096 AAATGTTTGCATCGAGAAATATGAAACAGATGTCATTCATTGAGAAGAAAAGTCTATTTATAG
379 GGATGTTCGAATCAAGAAACATGAAACAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAG
8823159 TCTCTAAAGC
Statistics
Matches: 1173, Mismatches: 237, Indels: 122
0.77 0.15 0.08
Matches are distributed among these distances:
505 70 0.06
506 44 0.04
507 167 0.14
508 11 0.01
509 11 0.01
510 108 0.09
511 340 0.29
512 144 0.12
513 18 0.02
514 239 0.20
515 11 0.01
516 3 0.00
517 2 0.00
518 3 0.00
519 1 0.00
520 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.38
Consensus pattern (502 bp):
TTTTAAATCAAAATATTTTTCACTTTTGGTTAAAATCCAACATAATTGGATATTTGCATTAGGAA
ACATGAAATGAATGCCATCCATTGACAAGTCCATTTATAATCACTCATGCCATCGAAAGCCTTGT
TACTTGCTTTAAGTGGTTTTATAATCTTATAAATGATTTTAAATAAAATTTTTTCATTTTTGGTT
AAAATATATCATAATTGGATGTTTACATTGAGAACATGAAGCGAAAGCCTTTCACTGACAAGAAA
AGTCCATTTATAGTCACTCATGCCTTCGAAAGCTTGTTACTTGCTTTAAATGGTTTTATAATCTT
ATAAATGATTTTAAATCAATTGTTTTCATTTATGGTTAAAATAGATCATAATTGGATGTTCGAAT
CAAGAAACATGAAACAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGACACTCACCTCATT
GAAAGCCTAGTTACTCACTTTAAATGGTTATATAATCGTACAAATGA
Found at i:8823206 original size:507 final size:503
Alignment explanation
Indices: 8821948--8823287 Score: 1071
Period size: 507 Copynumber: 2.6 Consensus size: 503
8821938 ATGACATCCA
* * * * * ** *
8821948 CTGACAAGAAAAGTCCATTTATAGTCATTCATGGCTTCGAAACCCTT-GTTACTCACTTTAAGTG
1 CTGACAAAAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA-GCTTAATTACTTGCTTTAAATG
* * * * *
8822012 GTTTAATAATCTTATACATGATTT-TAAATC--AATTGTTTTCATTTTTGGTTAAAATTGATCAT
65 GTTTTATAATCTTATAAATGATTTCT-AATCAAAATAG-TTTCATTTATGGTTAAAATAGATCAT
** * * * * * * * *
8822074 AATTGGATGTTCGAATTAAGAATCGTGAAACAGAAA-CTATCCATTGACAAGAAAAGTCCATTTA
128 AATTAAATGTTTGCATCAGGAAACATGAAACA-AAAGCCATCCATTGAGAAGAAAAGTCCATTTA
* * * * * * ** * ** * **
8822138 TATTA-ACTCAGGC-CTAT-GTAAGCCTAGTTGCTCGCTTTAAATGGTTATATAATCGTAT-AAT
192 TA-GACA-TTAAGCTC-ATCGAAAGCCTTGTTACTTACATTAAATCCTTTTATAATCCAATGAA-
* * *** * * *
8822199 TGATTTTAAATCAAAATAT-TTTTCATTTTGGGTT-AAAATCTAACATAGTTGGATATTTGCATT
253 TGATTTTAAATCAAAATCTGTTTT-ATTTT-GGTTGAAAAGCCCTCATAATTGGATGTTTGCATC
** * * * * * * * * **
8822262 GGGAAACATGAAATGAATGCCAT-CGTCTGACAAAACAAATTTCATTTATAGTAACTCATGCCAT
316 AAGAAACATGAAGTGGATGCCATCCAT-TG-----AC-AAGTCCATTTATAATCATTCATGCTTT
* * * * * * *
8822326 CGAAAGCCTTATTACTTGCTTTAAGTGGTTTTATAATCTTATAAATGATTTTAAATAGAATTATT
374 CGAAAGCCTTATTACTTGCTCTAAGTAGTTTAATAATCTTACAAATGATATTAAAAAAAATTATT
* * ** * * *
8822391 TTCATTTTTGGTTAAAATGTATCATAATTAGATGTTTACATTGAGAACGTGAAGCGAAAGCCTTT
439 TTCATTTCTAGTTAAAACATATCATAATTAGATGTTTACATCGAGAACATGAAGAGAAAGCCTTT
* * *
8822456 CACTGAGAAAAAAAGTCCATTTATAGTTACTCATGCCTTCGAAAGCTTAATTACTTGGTTTAAAT
1 --CTGACAAAAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCTTAATTACTTGCTTTAAAT
* **
8822521 GGTTTTATAATCTTATAAATGATTTCTAATCAAATTTTTTTCATTTATGGTTAAAATAGATCATA
64 GGTTTTATAATCTTATAAATGATTTCTAATCAAAATAGTTTCATTTATGGTTAAAATAGATCATA
** **
8822586 ATTGGATGTTTGCATCAGGAAACATGAAGTAAAAGCCATCCATTGAGAAGAAAAGTCCATTTATA
129 ATTAAATGTTTGCATCAGGAAACATGAAACAAAAGCCATCCATTGAGAAGAAAAGTCCATTTATA
* * * * ** *
8822651 GACATTTATCTCATTGAAAGCCTTGTTACTTACTTTAAATGTTTTTATAAT-C-TTGCAAATGAT
194 GACATTAAGCTCATCGAAAGCCTTGTTACTTACATTAAATCCTTTTATAATCCAATG--AATGAT
** * * * *
8822714 TTTTTATCAAAATCT-TTTTCACTTTTGGTT-AAAATCCCTCGTAATTGGATGTTTGCATTAGGA
257 TTTAAATCAAAATCTGTTTT-A-TTTTGGTTGAAAAGCCCTCATAATTGGATGTTTGCATCAAGA
*
8822777 AACATGAAGTGGATGCCATCCATTGACAAGTCCATTTATAATCATTCATGCTTTCGAAAGCCTTG
320 AACATGAAGTGGATGCCATCCATTGACAAGTCCATTTATAATCATTCATGCTTTCGAAAGCCTTA
8822842 TTACTTGCTCTAAGTAGTTTAATAATCTTACAAATGATATTAAACCAAAAATT-TTTTCATTTCT
385 TTACTTGCTCTAAGTAGTTTAATAATCTTACAAATGATATTAAA--AAAAATTATTTTCATTTCT
* *
8822906 AGTTAAAACATATCATAATTGGATGTTTGCATCGAGGAACATGAAGTAG-AAGTCATCTTT
448 AGTTAAAACATATCATAATTAGATGTTTACATCGA-GAACATGAAG-AGAAAG-C--CTTT
** * * * *
8822966 -TGACAAGGAAAGTCCATTTATAGTCACTTATGCCTTCGAAAGCCTT-GTTATTTGCTTTAAATT
1 CTGACAAAAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAG-CTTAATTACTTGCTTTAAATG
* * *
8823029 GTTTTATAATCTTATAAATTATTT-TAAATTAAAATAGTTTCATTTTTAT-G-TAAAGTAGATCA
65 GTTTTATAATCTTATAAATGATTTCT-AATCAAAATAGTTTCA--TTTATGGTTAAAATAGATCA
* * * * * *
8823091 TAATTAAATGTTTGCATC-GAGAAATATGAAACAGATGTCATTCATTGAGAAGAAAAGTCTATTT
127 TAATTAAATGTTTGCATCAG-GAAACATGAAACAAAAGCCATCCATTGAGAAGAAAAGTCCATTT
* * *
8823155 ATAGTC-TCTAAAGC-CATCGAAAG-C-TGTATCATTTGCATTAAATCCTTTTATAATCCAATGA
191 ATAGACAT-T-AAGCTCATCGAAAGCCTTGT-T-ACTTACATTAAATCCTTTTATAATCCAATGA
* * *
8823216 ATGATTTTAAATTAAAATGTGTTTTATTTTTGTTGAAAAGCCCTCATAATTGGATGTTTGCATCA
252 ATGATTTTAAATCAAAATCTGTTTTATTTTGGTTGAAAAGCCCTCATAATTGGATGTTTGCATCA
8823281 AGAAACA
317 AGAAACA
8823288 CAAAGCAGGT
Statistics
Matches: 675, Mismatches: 122, Indels: 69
0.78 0.14 0.08
Matches are distributed among these distances:
505 72 0.11
506 53 0.08
507 249 0.37
508 13 0.02
509 11 0.02
510 87 0.13
511 179 0.27
512 11 0.02
ACGTcount: A:0.34, C:0.13, G:0.14, T:0.38
Consensus pattern (503 bp):
CTGACAAAAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCTTAATTACTTGCTTTAAATGG
TTTTATAATCTTATAAATGATTTCTAATCAAAATAGTTTCATTTATGGTTAAAATAGATCATAAT
TAAATGTTTGCATCAGGAAACATGAAACAAAAGCCATCCATTGAGAAGAAAAGTCCATTTATAGA
CATTAAGCTCATCGAAAGCCTTGTTACTTACATTAAATCCTTTTATAATCCAATGAATGATTTTA
AATCAAAATCTGTTTTATTTTGGTTGAAAAGCCCTCATAATTGGATGTTTGCATCAAGAAACATG
AAGTGGATGCCATCCATTGACAAGTCCATTTATAATCATTCATGCTTTCGAAAGCCTTATTACTT
GCTCTAAGTAGTTTAATAATCTTACAAATGATATTAAAAAAAATTATTTTCATTTCTAGTTAAAA
CATATCATAATTAGATGTTTACATCGAGAACATGAAGAGAAAGCCTTT
Found at i:8823849 original size:28 final size:29
Alignment explanation
Indices: 8823808--8823867 Score: 68
Period size: 30 Copynumber: 2.1 Consensus size: 29
8823798 GTCTATGGGC
*
8823808 AATTTTTCAATTTT-TGGGGCAAAAATGT
1 AATTTTTCAATTTTAGGGGGCAAAAATGT
* * *
8823836 AATTTTTGACTTTTACGGGGGCAAAAGTGT
1 AATTTTTCAATTTTA-GGGGGCAAAAATGT
8823866 AA
1 AA
8823868 ATTTCAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 12 0.46
30 14 0.54
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.38
Consensus pattern (29 bp):
AATTTTTCAATTTTAGGGGGCAAAAATGT
Found at i:8826736 original size:170 final size:168
Alignment explanation
Indices: 8826419--8829220 Score: 1822
Period size: 171 Copynumber: 16.5 Consensus size: 168
8826409 ATCTATTTAC
* * * * * *
8826419 AAGAAAAGTCTATTTATTGTCACTCATCCCTTCGAAAGCCTAGTTACTAGCTTTAAATGGTTTTA
1 AAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTCGCTTTAAATGG-TTTA
* * ** * * **
8826484 TAATCTTATAAATGATTTTAAAACAAAATATTTTTTATTTTCGGTTAAAATAGAACATTATTTTA
65 TAATCTTATAAATGATTTTAAATCAAAATATTTTTCATTTT-GGTTAAAATCCATCATAATTGGA
* ** ** *
8826549 TGTTTGAATTGGGAAACATGAAGCTGATGTTATCCATAAGG
129 TGTTTGCATCAGGAAACATGAAGCTGATGCCATCCAT-TGG
* * * *
8826590 AAGAACAGTACATTTATAGTCACTCATGCCATCGATAGCCTTATTACTCGCTTTAAATGGTTTAT
1 AAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTCGCTTTAAATGGTTTAT
* * *
8826655 AATCTTATAAATGATTTTAAATCAAAATATTTTTCATCTTTAGTTAAAATCCCTTATAATTGGAT
66 AATCTTATAAATGATTTTAAATCAAAATATTTTTCAT-TTTGGTTAAAATCCATCATAATTGGAT
* * ** *
8826720 GTTTTCATCAGGAAACATGAAGCAGATGTAATCCATTGAC
130 GTTTGCATCAGGAAACATGAAGCTGATGCCATCCATTG-G
* * * * * *
8826760 AAGAAAAGTCTATATATAGTTACCCATGCCATC-AAAGCCTTGTTACTCACTTTAAATTGTTTTA
1 AAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTCGCTTTAAA-TGGTTTA
* * * ** * * **
8826824 TAACCTTATAAATAATTTTTAAT-TGAATTTTTTTCATTTTTGGTCAAAATAGATCATAATTGGA
65 TAATCTTATAAATGATTTTAAATCAAAATATTTTTCA-TTTTGGTTAAAATCCATCATAATTGGA
* * * * * *
8826888 TGCTTGCATCAAGAAATGA-GAAGC-GAAAGCTATCTATTGAG
129 TGTTTGCATCAGGAAA-CATGAAGCTG-ATGCCATCCATTG-G
* * * * * * * * *
8826929 AAGAAAAAGTCCATATGTAGCCACTCATCCCATCG-ACGCTTTGTTACTTGCTCTAAAAGGTTTT
1 AAG-AAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTCGCTTTAAATGG-TTT
** * * *
8826993 ATAATCTTATAAAT-ATTTTAAATCAAAATATTTTTCATGTTTCATTAAAATCCCTAATAATTGA
64 ATAATCTTATAAATGATTTTAAATCAAAATATTTTTCAT-TTTGGTTAAAATCCATCATAATTGG
** * *
8827057 ACATTTGCAT-AGAGAAACATGAA-CTAAATGCCATCCATTAAG
128 ATGTTTGCATCAG-GAAACATGAAGCT-GATGCCATCCATT-GG
* * * * * * * *
8827099 AAGAAAAGTCCACTAATAGTCACTAATGCCTTCAAAAGACTTGTTACCCCGCTCTT-AATGATTA
1 AAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTA-CTCGCT-TTAAATGGTT-
* * * **
8827163 TATAATCTTATAACTGAATTTAAATCAAAATCTTTTTCATTCTTGGTTAAAATTAATCATAATTG
63 TATAATCTTATAAATGATTTTAAATCAAAATATTTTTCATT-TTGGTTAAAATCCATCATAATTG
* ** * * * *
8827228 GATGTTTCCATTGGGAAACTTGAAACAGATGCCATCAATTGAG
127 GATGTTTGCATCAGGAAACATGAAGCTGATGCCATCCATTG-G
* * * * * * * * *
8827271 AAAAAAAATCCATTAATAGTCACCCATGCCATTGAAAGCCTTGTTAGTTGCGTAAAATGGTTTTA
1 AAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTCGCTTTAAATGG-TTTA
* * * *
8827336 TAATCTTATAAATAATTTTAAA-GAAACATCA-TTTT--TTTT-GTTTAAATCAATCATAATTGG
65 TAATCTTATAAATGATTTTAAATCAAA-AT-ATTTTTCATTTTGGTTAAAATCCATCATAATTGG
* * *
8827396 AT-TTTGCATTAGAAAACATGAAG-TAGATGCCATCCATTGAC
128 ATGTTTGCATCAGGAAACATGAAGCT-GATGCCATCCATTG-G
* * * * * *
8827437 AACAAAAGTCCATTTATAGTCACTTATGCCTTCGAAAGCCTTGTTTCTTGCTTTAAATGGTATAA
1 AAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTCGCTTTAAATGGT-TTA
* * * *
8827502 TAATCTTATAAATGATTTTAAATC-ATAT-TTTTTCCTTTCTAGTTAAAA-CATATCATAATTGG
65 TAATCTTATAAATGATTTTAAATCAAAATATTTTTCATTT-TGGTTAAAATC-CATCATAATTGG
* * ** * ***
8827564 ATGTTTGAATC-GAGAAACGTGAAGCAAAAGTTGTCCATTGG
128 ATGTTTGCATCAG-GAAACATGAAGCTGATGCCATCCATTGG
* * *
8827605 CAAGAAAAGTCTATTTATAGTCACTCATGCCCAT-GAAAGCCTTGTTACTCACTTTAAATAGTTT
1 -AAGAAAAGTCCATTTATAGTCACTCATG-CCATCGAAAGCCTTGTTACTCGCTTTAAAT-GGTT
* * * * * *
8827669 TATAATCTTACAAATGACTTTAAATCAAAATCTTTTTCCTTTTTGGTTAAAATCCCTCTTAATTG
63 TATAATCTTATAAATGATTTTAAATCAAAATATTTTT-CATTTTGGTTAAAATCCATCATAATTG
* * * * *
8827734 GATGCTTGTATCAAGAAACATTAAAC-GAATGCCATCCATTGG
127 GATGTTTGCATCAGGAAACATGAAGCTG-ATGCCATCCATTGG
* * * *
8827776 CAA-AAAGAG-CCTATTTATAGTCATTCAT-CCTATCGAAAGCCTTATTACTCACTTCAAATAGG
1 -AAGAAA-AGTCC-ATTTATAGTCACTCATGCC-ATCGAAAGCCTTGTTACTCGCTTTAAAT-GG
* * * ** *
8827838 -TTATAATCTTATAAATAATTTTAAAT-AGAAATATTTCTCTTTTTTGGTTAAAATTAACCATAA
61 TTTATAATCTTATAAATGATTTTAAATCA-AAATATTTTTC-ATTTTGGTTAAAATCCATCATAA
* * ** * * *
8827901 TTGGTTG-TTGACGTTGGGAAACATGAAG-TAGAAGCTATCCATTGAC
124 TTGGATGTTTG-CATCAGGAAACATGAAGCT-GATGCCATCCATTG-G
*** * * * ** * *
8827947 AAGAAAAGTCCATTTATTA-TCACTCATGTTTTTGAAAGCCTTGTAACTTGCTCCAATTAGTTTT
1 AAGAAAAGTCCATTTA-TAGTCACTCATGCCATCGAAAGCCTTGTTACTCGCTTTAAAT-GGTTT
* * * * ** *
8828011 CTAATTTTATAAATGATTTCAAATCAAAATTTTTTTCATTGTT-GTTAAAATAGATCATCATTGG
64 ATAATCTTATAAATGATTTTAAATCAAAATATTTTTCATT-TTGGTTAAAATCCATCATAATTGG
* ** * * ** *
8828075 TTGTTTGCATGGGGAAACATGTAG-TGAAAGCCATCCACAGAC
128 ATGTTTGCATCAGGAAACATGAAGCTG-ATGCCATCCATTG-G
* * * * * *
8828117 AAGACAAGTCCATTTATTGTCACTCATGCCTTTGAAAGCCTTGTTACAT-GATTTAATTGGTTTA
1 AAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTAC-TCGCTTTAAATGGTTT-
* ** * * **
8828181 AAAATCTTATAAATGATTTTAAATCAAGTTTTTTTTTCATTTATAGTTAAAATAGATCAT-ATTG
64 ATAATCTTATAAATGATTTTAAATCAA-AATATTTTTCATTT-TGGTTAAAATCCATCATAATTG
* * ** * *
8828245 GATGTTTGCAT-TGAGAAACGTGAAGCAAAAGTCATCCATT-G
127 GATGTTTGCATCAG-GAAACATGAAGCTGATGCCATCCATTGG
* * * * ***
8828286 ATAGGAAATGTCCTTTTATAGTTACTCATGCCTTCGAAAGCCTTGTTACTAATTTTAAATGGTTT
1 A-A-GAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTCGCTTTAAATGG-TT
* * * * *
8828351 TATAATCTAATAAATTATTTTAAGTCAAAATATTTTTTGC-TTTTGTTTAAAATCGATCATAATT
63 TATAATCTTATAAATGATTTTAAATCAAAATA-TTTTT-CATTTTGGTTAAAATCCATCATAATT
* ** * *
8828415 GGATTTTTGCATCAGGAAAGGTGAAGCGGATGCCATCCATTAAG
126 GGATGTTTGCATCAGGAAACATGAAGCTGATGCCATCCATT-GG
* * * * * * * *
8828459 AAGAAAAGTCTATTTATATTCA-TAAATGCCATTGAAAGCCTTGTCATTAGCTTTAAGTGGATTT
1 AAGAAAAGTCCATTTATAGTCACT-CATGCCATCGAAAGCCTTGTTACTCGCTTTAAATGG-TTT
* * *
8828523 ATAGTCTTATAAATGATTTTAAATCAAAATATTTTTTCTTTTTGGTTAAAATCTC-TCGTAATTG
64 ATAATCTTATAAATGATTTTAAATCAAAATA-TTTTTCATTTTGGTTAAAATC-CATCATAATTG
** *** *
8828587 GATGTTTGCATC-GAGAAACAAT-AAGCAAACAACATCCATTGAC
127 GATGTTTGCATCAG-GAAAC-ATGAAGCTGATGCCATCCATTG-G
* * * * * *
8828630 AACAAAAGTCCACTTATAGTCACTGATGACATTGAAAGCCTTGTTAATCG-TTTGAAATGGTTTA
1 AAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTCGCTTT-AAATGGTTT-
* * * *
8828694 ATAATCTTATAAATGATTTTAGATC-AATTTTTTTTTATTTTTGGTTAAAAAT--ATCATAATTG
64 ATAATCTTATAAATGATTTTAAATCAAAATATTTTTCA-TTTTGGTT-AAAATCCATCATAATTG
* * * * *
8828756 GATGTTTGCAT-TGATAAACATGAAGCCGAAGCCATCCATT-A
127 GATGTTTGCATCAG-GAAACATGAAGCTGATGCCATCCATTGG
* * * * * * * * *
8828797 ACAAACAAAGTCTATTTTTATTAACTCATGCCTTCGAAAGCTTTGTTAGTCGTTTTAAATGGTTA
1 A-AGA-AAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTCGCTTTAAATGGTT-
* * ** * *
8828862 TATAATCTTATAACTGATTTTAAATGAAAATATTTTTTGTTTTAGCTTAAAATCGATCATAATTG
63 TATAATCTTATAAATGATTTTAAATCAAAATATTTTTCATTTT-GGTTAAAATCCATCATAATTG
* **
8828927 GATATTTGCATTGGGAAACATGAAG-TAGATGCCATCCA-TGG
127 GATGTTTGCATCAGGAAACATGAAGCT-GATGCCATCCATTGG
* * * *
8828968 ATAAACAAAGTTCATTTATAGTCACTCATGCCATCAAAAGCCTTGTTACTCGCTTTAAGTGGTTT
1 A-AGA-AAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTCGCTTTAAATGG-TT
* ** * *
8829033 TATAATCTTATATATGATTTTAAATTGAATTA-TTTTCATTTTTGGTTAAAA-CATATCATAATT
63 TATAATCTTATAAATGATTTTAAATCAAAATATTTTTCA-TTTTGGTTAAAATC-CATCATAATT
* ** * * * * *
8829096 AGATGTTTGCATTGGGAAACATGAAGC-GAAAGCCTTACACTGAC
126 GGATGTTTGCATCAGGAAACATGAAGCTG-ATGCCATCCATTG-G
* * ** ** * * *
8829140 AAGAAAAGTCCATTTATAGTCACTCATGCCTTTG-AAGCCTAATTACTCATTTTAATTAGTTTTT
1 AAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTCGCTTTAAAT-GGTTTA
8829204 TAATCTTATAAATGATT
65 TAATCTTATAAATGATT
8829221 GTCAATCGAT
Statistics
Matches: 2067, Mismatches: 444, Indels: 242
0.75 0.16 0.09
Matches are distributed among these distances:
164 4 0.00
165 3 0.00
166 106 0.05
167 24 0.01
168 27 0.01
169 384 0.19
170 645 0.31
171 730 0.35
172 140 0.07
173 4 0.00
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38
Consensus pattern (168 bp):
AAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTCGCTTTAAATGGTTTAT
AATCTTATAAATGATTTTAAATCAAAATATTTTTCATTTTGGTTAAAATCCATCATAATTGGATG
TTTGCATCAGGAAACATGAAGCTGATGCCATCCATTGG
Found at i:8828247 original size:511 final size:509
Alignment explanation
Indices: 8826405--8831252 Score: 3016
Period size: 511 Copynumber: 9.5 Consensus size: 509
8826395 TGACAGCAGG
* * * * * * * *
8826405 TGCCATCTATTTACAAGAAAAGTCTATTTATTGTCACTCATCCCTTCGAAAGCCTAGTTACTAGC
1 TGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTTGC
* * *
8826470 TTTAAATGGTTTTATAATCTTATAAATGATTTTAAAACAAAATATTTTTT-ATTTTCGGTTAAAA
66 TTTAAGTGGTTTTATAATCTTATAAATGATTTTAAATCAAAAT-TTTTTTCATTTTTGGTTAAAA
* * * * ** * * * * ** * * *
8826534 TAGAACATTATTTTATGTTTGAATTGGGAAACATGAAGCTG-ATGTTATCCA-TAAGGAAGAACA
130 CATATCATAATTGGATGTTTGCATCGAGAAACATGAAGC-GAAAGCCATCCACTGA-CAAGAAAA
* * * * * * *
8826597 GTACATTTATAGTCACTCATGCCATCGATAGCCTTATTACTCGCTTTAAATGGTTT-ATAATCTT
193 GTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTCACTTTAAATAGTTTAATAATCTT
** * * * * * * *
8826661 ATAAATGATTTTAAATCAAAATATTTTTCATCTTTAGTTAAAATCCCTTATAATTGGATGTTTTC
258 ATAAATGATTTTAAATCAATTTTTTTTTCATTTTTGGTTAAAATACATCATAATTGGATGTTTGC
* * * ** * * * *
8826726 A-TCAGGAAACATGAAGCAGATGTAATCCATTGACAAGAAA-AGTCTATATATAGTTACCCATGC
323 ATTGA-GAAACATGAAAC-GAAGCCATCCATTGACAA-AAAGAGCCTATTTATAGTAACTCATGC
* * * * * *
8826789 CATC-AAAGCCTTGTTACTCACTTTAAATTGTTTTATAACCTTATAAATAATTTTTAATTG-AAT
385 CTTCGAAAGCCTTGTTACTCATTTTAAA-TGGTTTATAATCTTATAAATAATTTTAAATAGAAAT
* * * * * * *
8826852 -TTTTTTCATTTTTGGTCAAAAT-AGATCATAATTGGATGCTTGCATCAAGAAATGA-GAAG-CG
449 ATTTTTT--GTTTTGGTTAAAATCA-ATCATAATTGGAT-TTTGCATTAGGAAA-CATGAAGTAG
8826913 AA
509 -A
* * * * * * * * * *
8826915 AGCTATCTATTGAGAAGAAAAAGTCCATATGTAGCCACTCATCCCATCG-ACGCTTTGTTACTTG
1 TGCCATCCATTGACAAG-AAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTTG
* ** * * **
8826979 CTCTAAAAGGTTTTATAATCTTATAAAT-ATTTTAAATCAAAATATTTTTCATGTTTCATTAAAA
65 CTTTAAGTGGTTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTTTCATTTTTGGTTAAAA
* * ** * * * * *
8827043 TCCCTA--ATAATTGAACATTTGCATAGAGAAACATGAA-CTAAATGCCATCCATTAAGAAGAAA
130 --CATATCATAATTGGATGTTTGCATCGAGAAACATGAAGCGAAA-GCCATCCACTGACAAGAAA
* * * ** * * * *
8827105 AGTCCACTAATAGTCACTAATGCCTTCAAAAGACTTGTTACCCCGCTCTT-AAT-GATTATATAA
192 AGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTA-CTCACT-TTAAATAGTTTA-ATAA
* * ** * *
8827168 TCTTATAACTGAATTTAAATCAAAATCTTTTTCATTCTTGGTTAAAATTA-ATCATAATTGGATG
254 TCTTATAAATGATTTTAAATCAATTTTTTTTTCATTTTTGGTTAAAA-TACATCATAATTGGATG
* * * * * * * * * * *
8827232 TTTCCATTGGGAAACTTGAAACAGATGCCATCAATTGAGAAAAAAAATCC-ATTAATAGTCACCC
318 TTTGCATTGAGAAACATGAAAC-GAAGCCATCCATTGA-CAAAAAGAGCCTATTTATAGTAACTC
* **** *
8827296 ATGCCATT-GAAAGCCTTGTTAGTTGCGTAAAATGGTTTTATAATCTTATAAATAATTTT-AA-A
381 ATGCC-TTCGAAAGCCTTGTTACTCATTTTAAATGG-TTTATAATCTTATAAATAATTTTAAATA
* * * *
8827358 GAAACATCATTTT-TTTT-GTTTAAATCAATCATAATTGGATTTTGCATTAGAAAACATGAAGTA
444 GAAATAT-TTTTTGTTTTGGTTAAAATCAATCATAATTGGATTTTGCATTAGGAAACATGAAGTA
8827421 GA
508 GA
* * * *
8827423 TGCCATCCATTGACAACAAAAGTCCATTTATAGTCACTTATGCCTTCGAAAGCCTTGTTTCTTGC
1 TGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTTGC
* * * * * * *
8827488 TTTAAATGGTATAATAATCTTATAAATGATTTTAAATC-ATA-TTTTTTCCTTTCTAGTTAAAAC
66 TTTAAGTGGTTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTTTCATTTTTGGTTAAAAC
* * * *** * *
8827551 ATATCATAATTGGATGTTTGAATCGAGAAACGTGAAGCAAAAGTTGTCCATTGGCAAGAAAAGTC
131 ATATCATAATTGGATGTTTGCATCGAGAAACATGAAGCGAAAGCCATCCACTGACAAGAAAAGTC
* ** * *
8827616 TATTTATAGTCACTCATGCCCATGAAAGCCTTGTTACTCACTTTAAATAGTTTTATAATCTTACA
196 CATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTCACTTTAAATAGTTTAATAATCTTATA
* ** * * * * * * * *
8827681 AATGACTTTAAATCAAAATCTTTTTCCTTTTTGGTTAAAATCCCTCTTAATTGGATGCTTGTATC
261 AATGATTTTAAATCAATTTTTTTTTCATTTTTGGTTAAAATACATCATAATTGGATGTTTGCATT
* * * * *
8827746 AAGAAACATTAAACGAATGCCATCCATTGGCAAAAAGAGCCTATTTATAGTCATTCAT-CCTATC
326 GAGAAACATGAAACGAA-GCCATCCATTGACAAAAAGAGCCTATTTATAGTAACTCATGCCT-TC
* * *
8827810 GAAAGCCTTATTACTCACTTCAAATAGG-TTATAATCTTATAAATAATTTTAAATAGAAATATTT
389 GAAAGCCTTGTTACTCATTTTAAAT-GGTTTATAATCTTATAAATAATTTTAAATAGAAATATTT
* * * *
8827874 CTCTT-TTTTGGTTAAAATTAACCATAATTGG-TTGTTGACGTTGGGAAACATGAAGTAGA
453 -T-TTGTTTTGGTTAAAATCAATCATAATTGGATT-TTG-CATTAGGAAACATGAAGTAGA
* * *** * *
8827933 AGCTATCCATTGACAAGAAAAGTCCATTTATTA-TCACTCATGTTTTTGAAAGCCTTGTAACTTG
1 TGCCATCCATTGACAAGAAAAGTCCATTTA-TAGTCACTCATGCCATCGAAAGCCTTGTTACTTG
** * * * * * *
8827997 CTCCAATTAGTTTTCTAATTTTATAAATGATTTCAAATCAAAATTTTTTTCATTGTT-GTTAAAA
65 CTTTAAGTGGTTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTTTCATTTTTGGTTAAAA
* * * * * * * * * *
8828061 TAGATCATCATTGGTTGTTTGCATGGGGAAACATGTAGTGAAAGCCATCCACAGACAAGACAAGT
130 CATATCATAATTGGATGTTTGCATCGAGAAACATGAAGCGAAAGCCATCCACTGACAAGAAAAGT
* * * * *
8828126 CCATTTATTGTCACTCATGCCTTTGAAAGCCTTGTTACATGA-TTTAATTGGTTTAAAAATCTTA
195 CCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTAC-TCACTTTAAATAGTTTAATAATCTTA
* * *
8828190 TAAATGATTTTAAATCAAGTTTTTTTTTCATTTATAGTTAAAATAGATCAT-ATTGGATGTTTGC
259 TAAATGATTTTAAATCAA-TTTTTTTTTCATTTTTGGTTAAAATACATCATAATTGGATGTTTGC
* * * * * * * *
8828254 ATTGAGAAACGTGAAGCAAAAGTCATCCATTGATAGGAAATG-TCCT-TTTATAGTTACTCATGC
323 ATTGAGAAACATGAAAC-GAAGCCATCCATTGACA--AAAAGAGCCTATTTATAGTAACTCATGC
* * * *
8828317 CTTCGAAAGCCTTGTTACTAATTTTAAATGGTTTTATAATCTAATAAATTATTTTAAGTCA-AAA
385 CTTCGAAAGCCTTGTTACTCATTTTAAATGG-TTTATAATCTTATAAATAATTTTAAAT-AGAAA
* * * ** **
8828381 TATTTTTTGCTTTTGTTTAAAATCGATCATAATTGGATTTTTGCATCAGGAAAGGTGAAGCGGA
448 TATTTTTTG-TTTTGGTTAAAATCAATCATAATTGGA-TTTTGCATTAGGAAACATGAAGTAGA
* * * * * * *
8828445 TGCCATCCATTAAGAAGAAAAGTCTATTTATATTCA-TAAATGCCATTGAAAGCCTTGTCA-TTA
1 TGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACT-CATGCCATCGAAAGCCTTGTTACTT-
* *
8828508 GCTTTAAGTGGATTTATAGTCTTATAAATGATTTTAAATCAAAATATTTTTTC-TTTTTGGTTAA
64 GCTTTAAGTGGTTTTATAATCTTATAAATGATTTTAAATCAAAAT-TTTTTTCATTTTTGGTTAA
* * * *
8828572 AATC-TCTCGTAATTGGATGTTTGCATCGAGAAACAAT-AAGC-AAA-CAACATCCATTGACAAC
128 AA-CATATCATAATTGGATGTTTGCATCGAGAAAC-ATGAAGCGAAAGC--CATCCACTGACAAG
* * * * * * *
8828633 AAAAGTCCACTTATAGTCACTGATGACATTGAAAGCCTTGTTAATC-GTTTGAAATGGTTTAATA
189 AAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTCACTTT-AAATAGTTTAATA
* *
8828697 ATCTTATAAATGATTTTAGATCAATTTTTTTTT-ATTTTTGGTTAAAA-ATATCATAATTGGATG
253 ATCTTATAAATGATTTTAAATCAATTTTTTTTTCATTTTTGGTTAAAATACATCATAATTGGATG
* * * * * *
8828760 TTTGCATTGATAAACATGAAGCCGAAGCCATCCATTAACAAACAA-AGTCTATTTTTATTAACTC
318 TTTGCATTGAGAAACATGAA-ACGAAGCCATCCATTGACAAA-AAGAGCCTATTTATAGTAACTC
* * * * *
8828824 ATGCCTTCGAAAGCTTTGTTAGTCGTTTTAAATGGTTATATAATCTTATAACTGATTTTAAAT-G
381 ATGCCTTCGAAAGCCTTGTTACTCATTTTAAATGGTT-TATAATCTTATAAATAATTTTAAATAG
* * *
8828888 AAAATATTTTTTGTTTTAGCTTAAAATCGATCATAATTGGATATTTGCATTGGGAAACATGAAGT
445 -AAATATTTTTTGTTTT-GGTTAAAATCAATCATAATTGGAT-TTTGCATTAGGAAACATGAAGT
8828953 AGA
507 AGA
* * * * *
8828956 TGCCATCCATGGATAA-ACAAAGTTCATTTATAGTCACTCATGCCATCAAAAGCCTTGTTACTCG
1 TGCCATCCATTGACAAGA-AAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTTG
* ** *
8829020 CTTTAAGTGGTTTTATAATCTTATATATGATTTTAAAT-TGAATTATTTTCATTTTTGGTTAAAA
65 CTTTAAGTGGTTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTTTCATTTTTGGTTAAAA
* * * * *
8829084 CATATCATAATTAGATGTTTGCATTGGGAAACATGAAGCGAAAGCCTTACACTGACAAGAAAAGT
130 CATATCATAATTGGATGTTTGCATCGAGAAACATGAAGCGAAAGCCATCCACTGACAAGAAAAGT
** * * **
8829149 CCATTTATAGTCACTCATGCCTTTG-AAGCCTAATTACTCATTTTAATTAGTTTTTTAATCTTAT
195 CCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTCACTTTAAATAGTTTAATAATCTTAT
* * * * *
8829213 AAATGATTGTCAATCGATTTTTTTTTGTCAATCGATTTTTTTTTCATCTTTGGCTAAAACAGATC
260 AAATGATT-T---T--A------------AATCAATTTTTTTTTCATTTTTGGTTAAAATACATC
* * ** * * * *
8829278 ATAATTGGATGGTTGCA-TCATGAAATGTGAAGCGAAAGCCATCCATTGAGAAAAAAAGTGCT-T
307 ATAATTGGATGTTTGCATTGA-GAAACATGAAACG-AAGCCATCCATTGACAAAAAGAG-CCTAT
* * * * * *** * * *
8829341 TTATAATCACTTAT-CCATCGAAAGCCTTGTTAATTGCTTTAGATAT-TTTTGTAATCTTGTAAA
369 TTATAGTAACTCATGCCTTCGAAAGCCTTGTTACTCATTTTA-A-ATGGTTTATAATCTTATAAA
* * * ** * ** *
8829404 TAATTTTAAACCA-AACTCTTTTTCATTTTTGTTAAAATCTCTCATAATTGTATGTTTGCATTAG
432 TAATTTTAAA-TAGAAATATTTTTTGTTTTGGTTAAAATCAATCATAATTGGAT-TTTGCATTAG
**
8829468 GAAACATGAAGCGGA
495 GAAACATGAAGTAGA
* * * * *
8829483 TGCCATCCATTGAGAAGAAAAGTCCATTTATAGCCACT-ACTACCTAT-GAAA-CCTTATTAATT
1 TGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCA-TGCC-ATCGAAAGCCTTGTTACTT
* *
8829545 GCTTTAAATAGTTTTATAATCTTATAAATGATTTT---TGC---------TT-A---------AA
64 GCTTTAAGTGGTTTTATAATCTTATAAATGATTTTAAAT-CAAAATTTTTTTCATTTTTGGTTAA
* * * * ** * * * *
8829588 ATCA-ATCATAACTAGATGTTTGCAT-TAGGAAATGTGAAGCGAATTG-CATCCATTGACATGAC
128 AACATATCATAATTGGATGTTTGCATCGA-GAAACATGAAGCGAA-AGCCATCCACTGACAAGAA
** * *
8829650 AAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTGTTTCTCACTTTAAGT-GATTTAATAAT
191 AAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTCACTTTAAATAG-TTTAATAAT
* * ** * * * * * * * *
8829714 CTTATAAATGAGTTGAAATCAAAATTTGTTCCATTTCTAGTTATAACAGATCATAATTAGATGTT
255 CTTATAAATGATTTTAAATCAATTTTTTTTTCATTTTTGGTTAAAATACATCATAATTGGATGTT
* * * * * *
8829779 TTCATTG-GAAAACATGAAGCAAAAGCCATCTATGTGA-AAGAAA-A-CTCCATTTATAGTCACT
320 TGCATTGAG-AAACATGAAAC-GAAGCCATCCAT-TGACAA-AAAGAGC-CTATTTATAGTAACT
* * * * *
8829840 CATGCCTTCGAAAGCCTAGTTACTCATTTTAAAATGTTTTGTAATGTTATAAATGATTTTAAATC
380 CATGCCTTCGAAAGCCTTGTTACTCATTTT-AAATGGTTTATAATCTTATAAATAATTTTAAAT-
*
8829905 A-AAATATTTTTTGTTTTTGGTTAAAAT-AGAACATAATTGGATGTTTGCATTAGGAAACATGAA
443 AGAAATATTTTTTG-TTTTGGTTAAAATCA-ATCATAATTGGAT-TTTGCATTAGGAAACATGAA
*
8829968 GCAGA
505 GTAGA
* *** * * * * * **
8829973 TGCCATCAATTG--GTTAAAAGTACATTTATAGTCACTCATGTCATTGAAAGCTTTATTACTCAC
1 TGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTTGC
* ** *
8830036 TTTATA-TGGCTTTATAATCTTAT--ATGAAATTAAA-CAAATAATTTTTTT-GTTTTTGGTTAA
66 TTTA-AGTGGTTTTATAATCTTATAAATGATTTTAAATC-AA-AATTTTTTTCATTTTTGGTTAA
* * * *
8830096 AA-TTGATCATAATTGGATGTTTGCATC-AGTAAGCATGAAGCGATAA-CCATCCATTGAGAAGA
128 AACAT-ATCATAATTGGATGTTTGCATCGAG-AAACATGAAGCGA-AAGCCATCCACTGACAAGA
* * * * ** * * *
8830158 AAAGTCCATTTATAGTCACTTAT-CTCGTCGAAAGCATTGTTACTTGCTTTAAATGGTTTTATAT
190 AAAGTCCATTTATAGTCACTCATGC-CTTTGAAAGCCTTGTTACTCACTTTAAATAGTTTAATAA
* * ** * *
8830222 TCTTATAAATGATTTGAAATCAATTTTTTTTT-GTTTTTCATTAAAATCCCTCATAATTGGATGT
254 TCTTATAAATGATTTTAAATCAATTTTTTTTTCATTTTTGGTTAAAATACATCATAATTGGATGT
* * * * * * * *
8830286 TTGGA-TCAGGAAACATGAAGCGGATGCCATCCATTGAGAAGAAA-AG-TTCATTTATAATCACT
319 TTGCATTGA-GAAACATGAAAC-GAAGCCATCCATTGACAA-AAAGAGCCT-ATTTATAGTAACT
* *
8830348 AATGCCATC-AAAGCC-TGTTAGTCTCA--TTAAATGGTTTTATAATCTTATAAATAATTTTAAA
380 CATGCCTTCGAAAGCCTTGTTA--CTCATTTTAAATGG-TTTATAATCTTATAAATAATTTTAAA
* * * * * *
8830409 TCA-AAATCTTTATTGTCTTTGATTAAAAT-AGATCATAACTAGATGTTTGCATT-GGAAAACGT
442 T-AGAAATATTTTTTGT-TTTGGTTAAAATCA-ATCATAATTGGAT-TTTGCATTAGG-AAACAT
** *
8830471 GAAACAAA
502 GAAGTAGA
* * * * * * * * *
8830479 TGGCATCAATTGATAAGAAAAGTCCACTTATAGTCATTCATGGCTTCAAAAGCCTTGTTACATGC
1 TGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTTGC
* * ** * *
8830544 TTTAAGTGGTCTAATAATCAAATAAATGATTTT-AATCAAAACTTTTTTCATTTTTGGTCAAAAC
66 TTTAAGTGGTTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTTTCATTTTTGGTTAAAAC
* * * * * *
8830608 ATATCATAATTGGATGTTTGCATCAAGAAACGTCAAGTGAAA-CCAATCCA-TTAGAAGAAAAGT
131 ATATCATAATTGGATGTTTGCATCGAGAAACATGAAGCGAAAGCC-ATCCACTGACAAGAAAAGT
* * * * * * * *
8830671 TCATTTATAGTCAGTCATGCCTTCGAAAACCTAGTTACCCGCTTTAAAT-GATTTTATAATCTTA
195 CCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTCACTTTAAATAG-TTTAATAATCTTA
* ** * * *
8830735 TAAATAATTTTAAATCAAAATATTTTTCATTTTTGGTTAAAATAGATCATAATTGGATGTTTGAA
259 TAAATGATTTTAAATCAATTTTTTTTTCATTTTTGGTTAAAATACATCATAATTGGATGTTTGCA
* ** * * *
8830800 TTGAAAAACATGAAGTGGATGCAATCCATTGACAAGAAA-AGTCC-ATTTATAGTAACTCATGTC
324 TTGAGAAACATGAA-ACGAAGCCATCCATTGACAA-AAAGAG-CCTATTTATAGTAACTCATGCC
* * * * * * ** * * *
8830863 ATCG-AAGCCTTGTTACTCACTTAAAATGGTTTTATAACCTTCT-AATGATTTCCAATCGAATTG
386 TTCGAAAGCCTTGTTACTCATTTTAAATGG-TTTATAATCTTATAAATAATTTTAAATAGAAATA
*** * * * **
8830926 TTTTCAATTTTGGTTAAAAT-AGACCATAATTGGATGTTTGCATCAGAAAATGTGAAGT-GAA
450 TTTTTTGTTTTGGTTAAAATCA-ATCATAATTGGAT-TTTGCATTAGGAAACATGAAGTAG-A
* * * * * * * * * *
8830987 AGCCATCTATTGAGAAAAAAAATCCATTTATAGCCACTAATACCATCAAAAGCCTTGTTACTTAC
1 TGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTTGC
* * * * ** *
8831052 TCTAAATGGTTTAATAATCTTATAAATGATTTT-AATC-AAATCTTTTTCA-TTTTCATTAAATC
66 TTTAAGTGGTTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTTTCATTTTTGGTTAAA-A
* * *** * * * *
8831114 CCTA--ATAATTGGATGTTTACATCCTTAAACAAGAAGCGAATGCCATCCACTAAGAAGAAAAGT
130 CATATCATAATTGGATGTTTGCATCGAGAAACATGAAGCGAAAGCCATCCACTGACAAGAAAAGT
* * * * * * *
8831177 CCATTTATAATCACTAATGCCATCG-AAGTCTTGTTAGTCGA-TTTAAAT-GTTTTTATAATCTT
195 CCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTC-ACTTTAAATAG-TTTAATAATCTT
8831239 ATAAATGATTTTAA
258 ATAAATGATTTTAA
8831253 GCTCAAATTA
Statistics
Matches: 3400, Mismatches: 725, Indels: 431
0.75 0.16 0.09
Matches are distributed among these distances:
487 10 0.00
488 103 0.03
489 90 0.03
490 60 0.02
499 2 0.00
500 1 0.00
504 1 0.00
505 197 0.06
506 305 0.09
507 148 0.04
508 438 0.13
509 465 0.14
510 312 0.09
511 592 0.17
512 262 0.08
513 134 0.04
514 4 0.00
515 2 0.00
516 2 0.00
523 1 0.00
526 41 0.01
527 92 0.03
528 75 0.02
529 59 0.02
530 4 0.00
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (509 bp):
TGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTTGC
TTTAAGTGGTTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTTTCATTTTTGGTTAAAAC
ATATCATAATTGGATGTTTGCATCGAGAAACATGAAGCGAAAGCCATCCACTGACAAGAAAAGTC
CATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTCACTTTAAATAGTTTAATAATCTTATA
AATGATTTTAAATCAATTTTTTTTTCATTTTTGGTTAAAATACATCATAATTGGATGTTTGCATT
GAGAAACATGAAACGAAGCCATCCATTGACAAAAAGAGCCTATTTATAGTAACTCATGCCTTCGA
AAGCCTTGTTACTCATTTTAAATGGTTTATAATCTTATAAATAATTTTAAATAGAAATATTTTTT
GTTTTGGTTAAAATCAATCATAATTGGATTTTGCATTAGGAAACATGAAGTAGA
Found at i:8828334 original size:682 final size:675
Alignment explanation
Indices: 8826603--8831634 Score: 1995
Period size: 677 Copynumber: 7.5 Consensus size: 675
8826593 AACAGTACAT
* * * * * ** *
8826603 TTATAGTCACTCATGCCATCGATAGCCTTATTACTCGCTTTAAATGGTTT-ATAATCTTATAAAT
1 TTATAGTCACTCATGACATTGAAAGCCTTGTTAATCGCTCCAAATAGTTTAATAATCTTATAAAT
* * * *** * * *
8826667 GATTTTAAATCAAAATATTTTTCATCT-TTAGTTAAAATCCCTTATAATTGGATGTTTTCAT-CA
66 GATTTCAAATC-AAATTTTTTTCAT-TGTTGGTTAAAA-AGATCATAATTGGATGTTTGCATGGA
* * ** * * * * * * * *
8826730 GGAAACATGAAGCAGATGTAATCCATTGACAAGAAAAGTCTATATATAGTTACCCATGCCATC-A
128 -GAAACATGAAGCCGAAGCCATCCATAGACAA-ACAAGTCCATTTATTGTCACTCATGCCTTCGA
* * * * * * *
8826794 AAGCCTTGTTAC-TCACTTTAAATTGTTTTATAACCTTATAAATAATTTTTAATTGAAT-TTTTT
191 AAGCCTTGTTACATGA-TTTAAATGGTTTAATAATCTTATAAATGA-TTTTAAATCAATATTTTT
* * * ** * * *
8826857 TCATTTTTGGTCAAAATAGATCATAATTGGATGCTTGCATCAAGAAATGAGAAGCGAAAG-CTAT
254 TCA-TTTTAGTTAAAATAGATCATAATTGGATGTTTGCATTGAGAAACGTGAAGCAAAAGTC-AT
* * * * * * * * * ** *
8826921 CTATTGAGAAGAAAAAGTCCATATGTAGCCACTCATCCCATCG-ACGCTTTGTTACTTGCTCTAA
317 CCATTGA-TAG-AAAAGT-CTTTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTCACTTTAA
* * * ** * *
8826985 AAGGTTTTATAATCTTATAAAT-ATTTTAAATCAAAATATTTTTCATGTTTCATTAAAATCCCTA
379 ATGGTTTTATAATCTTATAAATGATTTTAAATCAAAAT-TTTTTCCTTTTTGGTTAAAATCCATC
* *** *
8827049 ATAATTGAACATTTGCAT-AGAGAAACATG-AACTAAATGCCATCCATTAAGAAGAAAAGTCC-A
443 ATAATTGGATGCTTGCATCA-AGAAACATGAAAC-GAATGCCATCCATTAAGAAGAAAAG-CCTA
* * * * * * * * * *
8827111 CTAATAGTCACT-AATGCCTTCAAAAGACTTGTTACCCCGC-TCTTAAT-GATTATATAATCTTA
505 TTTATAGTCA-TAAATGCCATCGAAAGCCTTATCA-TCAGCTTC-AAATGGA-T-TATAATCTTA
* * * *
8827173 TAACTGAA-TTTAAATCAAAATCTTTT-TCATTCTTGGTTAAAAT-TAATCATAATTGGATGTTT
565 TAAAT-AATTTTAAATCAAAATATTTTCTC-TTTTTGGTTAAAATCT-CTCATAATTGGATGTTT
* * * * * * *** * * * *
8827235 CCATTGGGAAAC-TTGAAACAGATGCCATCAATTGAGAAAAAAAATCCA-
627 GCATCGAGAAACAAT-AAGCAAACAACATCCATTGACAACAAAAGTCCAC
* * * * * * *
8827283 TTAATAGTCACCCATGCCATTGAAAGCCTTGTTAGTTGCGT-AAAATGGTTTTATAATCTTATAA
1 TT-ATAGTCACTCATGACATTGAAAGCCTTGTTAATCGC-TCCAAATAGTTTAATAATCTTATAA
* * ** ** * * *
8827347 ATAATTTTAAAGAAACATCATTTT--TT-TTGTTTAAATCA-ATCATAATTGGAT-TTTGCAT-T
64 ATGATTTCAAATCAA-ATTTTTTTCATTGTTGGTTAAA-AAGATCATAATTGGATGTTTGCATGG
** * * * * *
8827406 AGAAAACATGAAGTAGATGCCATCCATTGACAACAAAAGTCCATTTATAGTCACTTATGCCTTCG
127 AG-AAACATGAAGCCGAAGCCATCCATAGACAA-ACAAGTCCATTTATTGTCACTCATGCCTTCG
* * * *
8827471 AAAGCCTTGTTTCTTGCTTTAAATGGTATAATAATCTTATAAATGATTTTAAATC-ATATTTTTT
190 AAAGCCTTGTTACATGATTTAAATGGTTTAATAATCTTATAAATGATTTTAAATCAATATTTTTT
* * * * * **
8827535 CCTTTCTAGTTAAAACATATCATAATTGGATGTTTGAATCGAGAAACGTGAAGCAAAAGTTGTCC
255 CATTT-TAGTTAAAATAGATCATAATTGGATGTTTGCATTGAGAAACGTGAAGCAAAAGTCATCC
8827600 ATTGGCA-AGAAAAGTCTATTTATAGTCACTCATGCCCAT-GAAAGCCTTGTTACTCACTTTAAA
319 ATT-G-ATAGAAAAGTCT-TTTATAGTCACTCATG-CCATCGAAAGCCTTGTTACTCACTTTAAA
* * * * *
8827663 TAGTTTTATAATCTTACAAATGACTTTAAATCAAAATCTTTTTCCTTTTTGGTTAAAATCCCTCT
380 TGGTTTTATAATCTTATAAATGATTTTAAATCAAAAT-TTTTTCCTTTTTGGTTAAAATCCATCA
* * *
8827728 TAATTGGATGCTTGTATCAAGAAACATTAAACGAATGCCATCCATT-GGCAA-AAAGAGCCTATT
444 TAATTGGATGCTTGCATCAAGAAACATGAAACGAATGCCATCCATTAAG-AAGAAA-AGCCTATT
** *
8827791 TATAGTCATTCAT-CCTATCGAAAGCCTTATTACTCA-CTTCAAATAGG-TTATAATCTTATAAA
507 TATAGTCATAAATGCC-ATCGAAAGCCTTATCA-TCAGCTTCAAAT-GGATTATAATCTTATAAA
*
8827853 TAATTTTAAAT-AGAAATA-TTTCTCTTTTTTGGTTAAAAT-TAAC-CATAATTGGTTG-TTGAC
569 TAATTTTAAATCA-AAATATTTTCTC-TTTTTGGTTAAAATCT--CTCATAATTGGATGTTTG-C
* * * * * * * *
8827913 GTTGGGAAAC-ATGAAGTAGA-AGCTATCCATTGACAAGAAAAGTCCAT
629 ATCGAGAAACAAT-AAGCAAACAAC-ATCCATTGACAACAAAAGTCCAC
*** * * ** *
8827960 TTATTA-TCACTCATGTTTTTGAAAGCCTTG-TAACTTGCTCCAATTAGTTTTCTAATTTTATAA
1 TTA-TAGTCACTCATGACATTGAAAGCCTTGTTAA-TCGCTCCAAATAGTTTAATAATCTTATAA
* *
8828023 ATGATTTCAAATCAAAATTTTTTTCATTGTT-GTTAAAATAGATCATCATTGGTTGTTTGCATGG
64 ATGATTTCAAATC-AAATTTTTTTCATTGTTGGTTAAAA-AGATCATAATTGGATGTTTGCATGG
* * * * *
8828087 GGAAACATGTAG-TGAAAGCCATCCACAGACAAGACAAGTCCATTTATTGTCACTCATGCCTTTG
127 AGAAACATGAAGCCG-AAGCCATCCATAGACAA-ACAAGTCCATTTATTGTCACTCATGCCTTCG
* * *
8828151 AAAGCCTTGTTACATGATTTAATTGGTTTAAAAATCTTATAAATGATTTTAAATCAAGTTTTTTT
190 AAAGCCTTGTTACATGATTTAAATGGTTTAATAATCTTATAAATGATTTTAAATCAA--TATTTT
8828216 TTCATTTATAGTTAAAATAGATCAT-ATTGGATGTTTGCATTGAGAAACGTGAAGCAAAAGTCAT
253 TTCATTT-TAGTTAAAATAGATCATAATTGGATGTTTGCATTGAGAAACGTGAAGCAAAAGTCAT
* * * * *
8828280 CCATTGATAGGAAATGTCCTTTTATAGTTACTCATGCCTTCGAAAGCCTTGTTACTAATTTTAAA
317 CCATTGATA-GAAAAGT-CTTTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTCACTTTAAA
* * * * * *
8828345 TGGTTTTATAATCTAATAAATTATTTTAAGTCAAAATATTTTTTGC-TTTTGTTTAAAATCGATC
380 TGGTTTTATAATCTTATAAATGATTTTAAATC-AAA-ATTTTTTCCTTTTTGGTTAAAATCCATC
** * ** * * *
8828409 ATAATTGGATTTTTGCATCAGGAAAGGTGAAGCGGATGCCATCCATTAAGAAGAAAAGTCTATTT
443 ATAATTGGATGCTTGCATCAAGAAACATGAAACGAATGCCATCCATTAAGAAGAAAAGCCTATTT
* * * * * * * *
8828474 ATATTCATAAATGCCATTGAAAGCCTTGTCATTAGCTTTAAGTGGATTTATAGTCTTATAAATGA
508 ATAGTCATAAATGCCATCGAAAGCCTTATCATCAGCTTCAAATGGA-TTATAATCTTATAAATAA
* *
8828539 TTTTAAATCAAAATATTTTTTCTTTTTGGTTAAAATCTCTCGTAATTGGATGTTTGCATCGAGAA
572 TTTTAAATCAAAATATTTTCTCTTTTTGGTTAAAATCTCTCATAATTGGATGTTTGCATCGAGAA
8828604 ACAATAAGCAAACAACATCCATTGACAACAAAAGTCCAC
637 ACAATAAGCAAACAACATCCATTGACAACAAAAGTCCAC
* * ** *
8828643 TTATAGTCACTGATGACATTGAAAGCCTTGTTAATCGTTTGAAATGGTTTAATAATCTTATAAAT
1 TTATAGTCACTCATGACATTGAAAGCCTTGTTAATCGCTCCAAATAGTTTAATAATCTTATAAAT
* * * * * * * *
8828708 GATTTTAGATCAATTTTTTTTTATTTTTGGTTAAAAATATCATAATTGGATGTTTGCATTGATAA
66 GATTTCAAATCAAATTTTTTTCATTGTTGGTTAAAAAGATCATAATTGGATGTTTGCATGGAGAA
* * *
8828773 ACATGAAGCCGAAGCCATCCATTA-ACAAACAAAGTCTATTT-TTATTAACTCATGCCTTCGAAA
131 ACATGAAGCCGAAGCCATCCA-TAGACAAAC-AAGTCCATTTATT-GTCACTCATGCCTTCGAAA
* * * * *
8828836 GCTTTGTTA-GTCGTTTTAAATGG-TTATATAATCTTATAACTGATTTTAAATGAAAATATTTTT
193 GCCTTGTTACAT-GATTTAAATGGTTTA-ATAATCTTATAAATGATTTTAAAT--CAATATTTTT
* * * * * * * * *
8828899 T-GTTTTAGCTTAAAATCGATCATAATTGGATATTTGCATTGGGAAACATGAAGTAGATGCCATC
254 TCATTTTAG-TTAAAATAGATCATAATTGGATGTTTGCATTGAGAAACGTGAAGCAAAAGTCATC
* * * * * *
8828963 CATGGATAAACAAAGTTCATTTATAGTCACTCATGCCATCAAAAGCCTTGTTACTCGCTTTAAGT
318 CATTGATAGA-AAAG-TCTTTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTCACTTTAAAT
* ** * *
8829028 GGTTTTATAATCTTATATATGATTTTAAAT-TGAATTATTTTCATTTTTGGTTAAAA-CATATCA
381 GGTTTTATAATCTTATAAATGATTTTAAATCAAAATT-TTTTCCTTTTTGGTTAAAATC-CATCA
* * *** * * * * * * *
8829091 TAATTAGATGTTTGCATTGGGAAACATGAAGCGAAAGCCTTACACTGACAAGAAAAGTCC-ATTT
444 TAATTGGATGCTTGCATCAAGAAACATGAAACGAATGCCATCCATTAAGAAGAAAAG-CCTATTT
* * * * * * * * ** *
8829155 ATAGTCACT-CATGCCTTTG-AAGCCTAATTACTCA-TTTTAATTAGTTTTTTAATCTTATAAAT
508 ATAGTCA-TAAATGCCATCGAAAGCCTTATCA-TCAGCTTCAAAT-GGATTATAATCTTATAAAT
* * * * * * * **
8829217 GATTGTCAATCGATTTTTTTTTGTCAATCGATTTTTTTTTCATCTTTGGCTAAAA-CAGATCATA
570 AATT-TTAA---A----------TCAA---AATATTTTCTC-TTTTTGGTTAAAATC-TCTCATA
* ** * * * **
8829281 ATTGGATGGTTGCATC-ATGAAA-TGTGAAGCGAAAGC--CATCCATTGAGAAAAAAAGTGCTT
616 ATTGGATGTTTGCATCGA-GAAACAAT-AAGC-AAA-CAACATCCATTGACAACAAAAGTCCAC
* * * * * ** * * ** *
8829341 TTATAATCACTTAT-CCATCGAAAGCCTTGTTAATTGCTTTAGATATTTTTGTAATCTTGTAAAT
1 TTATAGTCACTCATGACATTGAAAGCCTTGTTAATCGCTCCAAATAGTTTAATAATCTTATAAAT
* * * * * *** * *
8829405 AATTTTAAACCAAACTCTTTTTCATT-TTTGTTAAAATCTCTCATAATTGTATGTTTGCAT-TAG
66 GATTTCAAATCAAA-TTTTTTTCATTGTTGGTTAAAA-AGATCATAATTGGATGTTTGCATGGA-
* * * * * * * *
8829468 GAAACATGAAGCGGATGCCATCCATTGAGAAGAAAAGTCCATTTATAGCCACT-ACTACCTAT-G
128 GAAACATGAAGCCGAAGCCATCCATAGACAA-ACAAGTCCATTTATTGTCACTCA-TGCCT-TCG
* * * *
8829531 AAA-CCTTATTA-ATTGCTTTAAATAGTTTTATAATCTTATAAATG-------------ATTTTT
190 AAAGCCTTGTTACA-TGATTTAAATGGTTTAATAATCTTATAAATGATTTTAAATCAATATTTTT
* * * * * *
8829581 GC-------TTAAAATCA-ATCATAACTAGATGTTTGCATT-AGGAAATGTGAAGC-GAATTGCA
254 TCATTTTAGTTAAAAT-AGATCATAATTGGATGTTTGCATTGA-GAAACGTGAAGCAAAAGT-CA
* * * * * *
8829636 TCCATTGACATGACAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTGTTTCTCACTTTAA
316 TCCATTGATA-GAAAAGT-CTTTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTCACTTTAA
* * * * * * * * * *
8829701 GTGATTTAATAATCTTATAAATGAGTTGAAATCAAAATTTGTTCCATTTCTAGTTATAA-CAGAT
379 ATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTTCC-TTTTTGGTTAAAATC-CAT
* * * ** * * * * * *
8829765 CATAATTAGATGTTTTCAT-TGGAAAACATGAAGCAAAAGCCATCTATGTGA-AAGAAAA-CTCC
442 CATAATTGGATGCTTGCATCAAG-AAACATGAAACGAATGCCATCCAT-TAAGAAGAAAAGC-CT
* * * ** * ** * *
8829827 ATTTATAGTCACT-CATGCCTTCGAAAGCC-TAGTTACTCATTTTAAAATGTTTTGTAATGTTAT
504 ATTTATAGTCA-TAAATGCCATCGAAAGCCTTA-TCA-TCAGCTTCAAATGGATTATAATCTTAT
* * * ****
8829890 AAATGATTTTAAATCAAAATATTTTTTGTTTTTGGTTAAAATAGAACATAATTGGATGTTTGCAT
566 AAATAATTTTAAATCAAAATATTTTCTCTTTTTGGTTAAAATCTCTCATAATTGGATGTTTGCAT
* * *** * *** * *
8829955 -TAGGAAAC-ATGAAGCAGATGCCATCAATTG--GTTAAAAGTACAT
631 CGA-GAAACAAT-AAGCAAACAACATCCATTGACAACAAAAGTCCAC
* * * * * ** * *
8829998 TTATAGTCACTCATGTCATTGAAAGCTTTATTACTCACTTTATATGGCTTT-ATAATCTTAT--A
1 TTATAGTCACTCATGACATTGAAAGCCTTGTTAATCGCTCCAAATAG-TTTAATAATCTTATAAA
* ** * *
8830060 TGAAATT-AAA-CAAATAATTTTTTTGTTTTTGGTTAAAATTGATCATAATTGGATGTTTGCAT-
65 TG-ATTTCAAATCAAAT--TTTTTTCATTGTTGGTTAAAA-AGATCATAATTGGATGTTTGCATG
* * * * * * * * *
8830122 CAGTAAGCATGAAG-CGATAACCATCCATTGAGAAGAAAAGTCCATTTATAGTCACTTAT-CTCG
126 GAG-AAACATGAAGCCGA-AGCCATCCATAGACAA-ACAAGTCCATTTATTGTCACTCATGC-CT
* * * * * * *
8830185 TCGAAAGCATTGTTACTTGCTTTAAATGGTTTTATATTCTTATAAATGATTTGAAATCAATTTTT
187 TCGAAAGCCTTGTTACATGATTTAAATGGTTTAATAATCTTATAAATGATTTTAAATCAA-TATT
** *** * * * ** * *
8830250 TTTTGTTTTTCA-TTAAAATCCCTCATAATTGGATGTTTGGA-TCAGGAAACATGAAGCGGATGC
251 TTTTCATTTT-AGTTAAAATAGATCATAATTGGATGTTTGCATTGA-GAAACGTGAAGCAAAAGT
* * * * * * *
8830313 CATCCATTGAGAAGAAAAGTTCATTTATAATCACTAATGCCATC-AAAGCC-TGTTAGTCTCATT
314 CATCCATTGA-TAGAAAAG-TCTTTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTCACTTT
* * * * **
8830376 AAATGGTTTTATAATCTTATAAATAATTTTAAATCAAAATCTTTATT-GTCTTTGATTAAAATAG
377 AAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAAT-TTT-TTCCTTTTTGGTTAAAATCC
* * * ** * * * * * *
8830440 ATCATAACTAGATGTTTGCAT-TGGAAAACGTGAAACAAATGGCATCAATTGATAAGAAAAGTCC
440 ATCATAATTGGATGCTTGCATCAAG-AAACATGAAACGAATGCCATCCATTAAGAAGAAAAG-CC
* ** * * * * * * * **
8830504 -ACTTATAGTCATTCATGGCTTCAAAAGCCTTGTTA-CATGCTTTAAGTGG-TCTAATAATCAAA
503 TATTTATAGTCATAAATGCCATCGAAAGCCTTATCATCA-GCTTCAAATGGAT-T-ATAATCTTA
* * *
8830566 TAAATGATTTT-AATCAAAACT-TTTT-TCATTTTTGGTCAAAA-CATATCATAATTGGATGTTT
565 TAAATAATTTTAAATCAAAA-TATTTTCTC-TTTTTGGTTAAAATC-TCTCATAATTGGATGTTT
* * * * * * * *
8830627 GCATCAAGAAAC-GTCAAGTGAAACCA-ATCCATT-AGAAGAAAAGTTCAT
627 GCATCGAGAAACAAT-AAG-CAAACAACATCCATTGACAACAAAAGTCCAC
* * * * ** ** *
8830675 TTATAGTCAGTCATG-CCTTCGAAAACCTAGTTACCCGCTTTAAAT-GATTTTATAATCTTATAA
1 TTATAGTCACTCATGACATT-GAAAGCCTTGTTAATCGCTCCAAATAG-TTTAATAATCTTATAA
* * * * * *
8830738 ATAATTTTAAATCAAAATATTTTTCATTTTTGGTTAAAATAGATCATAATTGGATGTTTGAATTG
64 ATGATTTCAAATC-AAATTTTTTTCATTGTTGGTTAAAA-AGATCATAATTGGATGTTTGCATGG
* ** * * * * * * * *
8830803 AAAAACATGAAGTGGATGCAATCCATTGACAAGAAAAGTCCATTTATAGTAACTCATGTCATCG-
127 AGAAACATGAAGCCGAAGCCATCCATAGACAA-ACAAGTCCATTTATTGTCACTCATGCCTTCGA
* * * * * ** *
8830867 AAGCCTTGTTAC-TCACTTAAAATGGTTTTATAACCTTCT-AATGATTTCCAATCGAAT-TGTTT
191 AAGCCTTGTTACATGA-TTTAAATGGTTTAATAATCTTATAAATGATTTTAAATC-AATATTTTT
* * * * ** *
8830929 TCAATTTTGGTTAAAATAGACCATAATTGGATGTTTGCA-TCAGAAAATGTGAAGTGAAAGCCAT
254 TC-ATTTTAGTTAAAATAGATCATAATTGGATGTTTGCATTGAG-AAACGTGAAGCAAAAGTCAT
* * * * * * * * * * *
8830993 CTATTGAGAAAAAAAATCCATTTATAGCCACTAATACCATCAAAAGCCTTGTTACTTACTCTAAA
317 CCATTGA-TAGAAAAGT-CTTTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTCACTTTAAA
* * ** * *
8831058 TGGTTTAATAATCTTATAAATGATTTT-AATC-AAATCTTTTT-CATTTTCATT-AAATCCCTAA
380 TGGTTTTATAATCTTATAAATGATTTTAAATCAAAAT-TTTTTCCTTTTTGGTTAAAATCCATCA
* * *** * * *
8831119 TAATTGGATGTTTACATCCTTAAACAAGAAGCGAATGCCATCCACTAAGAAGAAAAGTCC-ATTT
444 TAATTGGATGCTTGCATCAAGAAACATGAAACGAATGCCATCCATTAAGAAGAAAAG-CCTATTT
* * * * * * **
8831183 ATAATCACT-AATGCCATCG-AAGTCTTGTTAGTC-GATTTAAATGTTTTTATAATCTTATAAAT
508 ATAGTCA-TAAATGCCATCGAAAGCCTTATCA-TCAGCTTCAAATG-GATTATAATCTTATAAAT
* * * * * ** * *
8831245 GATTTTAAGCTC--AA-ATTAT-TATTTTTAGTTAAAAT-GATCATAACT--A-----G-A--GT
570 AATTTTAA-ATCAAAATATTTTCTCTTTTTGGTTAAAATCTCTCATAATTGGATGTTTGCATCGA
* * *
8831295 G----AAT-TG-------CATCCATTGACAAGAAAAGTCCAT
634 GAAACAATAAGCAAACAACATCCATTGACAACAAAAGTCCAC
* * * * * ** ** * * * *
8831325 TTATAGTCACTCATGCCCTTAAAAGCCTTATTACTCGCTTTAGGTGGCTTAATAATGTTTTAAAT
1 TTATAGTCACTCATGACATTGAAAGCCTTGTTAATCGCTCCAAATAGTTTAATAATCTTATAAAT
* * * * * *
8831390 GATTTTAAATCAATTTTTTTTCATTTTTAGTTAAAACAAATCATAATTGGATGTTTGCATCGAGA
66 GATTTCAAATCAAATTTTTTTCATTGTTGGTTAAAA-AGATCATAATTGGATGTTTGCATGGAGA
* * * * * * ** *
8831455 AACATAAAGCAGAAGCCATCCATTGGCAAGAAAAGTTCATTTATAATCACTCATGCCTTTGAAAG
130 AACATGAAGCCGAAGCCATCCATAGACAA-ACAAGTCCATTTATTGTCACTCATGCCTTCGAAAG
** * * * * * *
8831520 CCTCATTAC-TCACTTTAAATGGTTTTATAATTTTATAAATAAGTTTAAATCAAAGTATTTTGT-
194 CCTTGTTACATGA-TTTAAATGGTTTAATAATCTTATAAATGATTTTAAATC-AA-TATTTTTTC
* * * * * *
8831583 GTTTTGGTT-AAATGAGATCATAATCGGATGCTTGCATCGAGAAACATGAAGC
256 ATTTTAGTTAAAAT-AGATCATAATTGGATGTTTGCATTGAGAAACGTGAAGC
8831635 GGATGCCATC
Statistics
Matches: 3410, Mismatches: 703, Indels: 507
0.74 0.15 0.11
Matches are distributed among these distances:
649 102 0.03
650 106 0.03
651 52 0.02
652 3 0.00
653 4 0.00
654 1 0.00
655 4 0.00
656 18 0.01
657 103 0.03
658 69 0.02
659 53 0.02
660 8 0.00
661 1 0.00
663 5 0.00
664 1 0.00
669 1 0.00
671 8 0.00
672 16 0.00
673 5 0.00
674 42 0.01
675 209 0.06
676 356 0.10
677 518 0.15
678 217 0.06
679 234 0.07
680 159 0.05
681 164 0.05
682 477 0.14
683 194 0.06
684 22 0.01
694 4 0.00
697 102 0.03
698 145 0.04
699 6 0.00
700 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (675 bp):
TTATAGTCACTCATGACATTGAAAGCCTTGTTAATCGCTCCAAATAGTTTAATAATCTTATAAAT
GATTTCAAATCAAATTTTTTTCATTGTTGGTTAAAAAGATCATAATTGGATGTTTGCATGGAGAA
ACATGAAGCCGAAGCCATCCATAGACAAACAAGTCCATTTATTGTCACTCATGCCTTCGAAAGCC
TTGTTACATGATTTAAATGGTTTAATAATCTTATAAATGATTTTAAATCAATATTTTTTCATTTT
AGTTAAAATAGATCATAATTGGATGTTTGCATTGAGAAACGTGAAGCAAAAGTCATCCATTGATA
GAAAAGTCTTTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTCACTTTAAATGGTTTTATAA
TCTTATAAATGATTTTAAATCAAAATTTTTTCCTTTTTGGTTAAAATCCATCATAATTGGATGCT
TGCATCAAGAAACATGAAACGAATGCCATCCATTAAGAAGAAAAGCCTATTTATAGTCATAAATG
CCATCGAAAGCCTTATCATCAGCTTCAAATGGATTATAATCTTATAAATAATTTTAAATCAAAAT
ATTTTCTCTTTTTGGTTAAAATCTCTCATAATTGGATGTTTGCATCGAGAAACAATAAGCAAACA
ACATCCATTGACAACAAAAGTCCAC
Found at i:8828373 original size:171 final size:170
Alignment explanation
Indices: 8826406--8831261 Score: 2203
Period size: 170 Copynumber: 28.6 Consensus size: 170
8826396 GACAGCAGGT
* * * * * * *
8826406 GCCATCTATTTACAAGAAAAGTCTATTTATTGTCACTCATCCCTTCGAAAGCCTAGTTACTAGCT
1 GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCT
* *
8826471 TTAAATGGTTTTATAATCTTATAAATGATTTTAAAACAAAATATTTTTT-ATTTTCGGTTAAAAT
66 TTAAATGGTTTTATAATCTTATAAATGATTTTAAATC-AAATTTTTTTTCATTTT-GGTTAAAAT
* * ** * * ** *
8826535 AGAACATTATTTTATGTTTGAATTGGGAAACATGAAGCTGAT
129 AGATCATAATTGGATGTTTGCATTGAGAAACATGAAGCAAAA
** * * * * * * *
8826577 GTTATCCA-TAAGGAAGAACAGTACATTTATAGTCACTCATGCCATCGATAGCCTTATTACTCGC
1 GCCATCCATTGA-CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGC
* * *
8826641 TTTAAATGG-TTTATAATCTTATAAATGATTTTAAATCAAAATATTTTTCATCTTTAGTTAAAAT
65 TTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAATTTTTTTTCAT-TTTGGTTAAAAT
*** * * * * *
8826705 CCCTTATAATTGGATGTTTTCA-TCAGGAAACATGAAGCAGAT
129 AGATCATAATTGGATGTTTGCATTGA-GAAACATGAAGCAAAA
** * * * * * *
8826747 GTAATCCATTGACAAGAAAAGTCTATATATAGTTACCCATGCCATC-AAAGCCTTGTTACTCACT
1 GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCT
* * * * ** *
8826811 TTAAATTGTTTTATAACCTTATAAATAATTTTTAATTGAA-TTTTTTTCATTTTTGGTCAAAATA
66 TTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAATTTTTTTTCA-TTTTGGTTAAAATA
* ** * *
8826875 GATCATAATTGGATGCTTGCATCAAGAAATGA-GAAGCGAAA
130 GATCATAATTGGATGTTTGCATTGAGAAA-CATGAAGCAAAA
* * * * * * * * * * *
8826916 GCTATCTATTGAGAAGAAAAAGTCCATATGTAGCCACTCATCCCATCG-ACGCTTTGTTACTTGC
1 GCCATCCATTGACAAG-AAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGC
* * * * **
8826980 TCTAAAAGGTTTTATAATCTTATAAAT-ATTTTAAATCAAAATATTTTTCATGTTTCATTAAAAT
65 TTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAATTTTTTTTCAT-TTTGGTTAAAAT
*** * * ** * *
8827044 CCCTAATAATTGAACATTTGCATAGAGAAACATGAA-CTAAAT
129 AGATCATAATTGGATGTTTGCATTGAGAAACATGAAGC-AAAA
* * * * * * * *
8827086 GCCATCCATTAAGAAGAAAAGTCCACTAATAGTCACTAATGCCTTCAAAAGACTTGTTACCCCGC
1 GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTA-CTCGC
* * * * * *
8827151 TCTT-AATGATTATATAATCTTATAACTGAATTTAAATCAAAATCTTTTTCATTCTTGGTTAAAA
65 T-TTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAATTTTTTTTCATT-TTGGTTAAAA
* * * * * *
8827215 TTA-ATCATAATTGGATGTTTCCATTGGGAAACTTGAAACAGAT
128 -TAGATCATAATTGGATGTTTGCATTGAGAAACATGAAGCAAAA
* * * * * * * *
8827258 GCCATCAATTGAGAAAAAAAATCCATTAATAGTCACCCATGCCATT-GAAAGCCTTGTTAGTTGC
1 GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC-TTCGAAAGCCTTGTTACTCGC
* * * * * ** *
8827322 GTAAAATGGTTTTATAATCTTATAAATAATTTTAAA-GAAACATCATTTT--TTTT-GTTTAAAT
65 TTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAA-TTTTTTTTCATTTTGGTTAAAAT
* * *
8827383 CA-ATCATAATTGGAT-TTTGCATT-AGAAAACATGAAGTAGAT
129 -AGATCATAATTGGATGTTTGCATTGAG-AAACATGAAGCAAAA
* * * *
8827424 GCCATCCATTGACAACAAAAGTCCATTTATAGTCACTTATGCCTTCGAAAGCCTTGTTTCTTGCT
1 GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCT
* * * * * *
8827489 TTAAATGGTATAATAATCTTATAAATGATTTTAAATC--ATATTTTTTCCTTTCTAGTTAAAACA
66 TTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAATTTTTTTTCATTT-TGGTTAAAATA
* * * *
8827552 TATCATAATTGGATGTTTGAATCGAGAAACGTGAAGCAAAA
130 GATCATAATTGGATGTTTGCATTGAGAAACATGAAGCAAAA
*** * * * *
8827593 GTTGTCCATTGGCAAGAAAAGTCTATTTATAGTCACTCATGCCCAT-GAAAGCCTTGTTACTCAC
1 GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG-CCTTCGAAAGCCTTGTTACTCGC
* * * * * *
8827657 TTTAAATAGTTTTATAATCTTACAAATGACTTTAAATCAAAATCTTTTTCCTTTTTGGTTAAAAT
65 TTTAAATGGTTTTATAATCTTATAAATGATTTTAAATC-AAATTTTTTTTCATTTTGGTTAAAAT
*** * * * ** * * * *
8827722 CCCTCTTAATTGGATGCTTGTATCAAGAAACATTAAACGAAT
129 AGATCATAATTGGATGTTTGCATTGAGAAACATGAAGCAAAA
* * *
8827764 GCCATCCATTGGCAA-AAAGAG-CCTATTTATAGTCATTCAT-CCTATCGAAAGCCTTATTACTC
1 GCCATCCATTGACAAGAAA-AGTCC-ATTTATAGTCACTCATGCCT-TCGAAAGCCTTGTTACTC
* * * * *
8827826 ACTTCAAATAGG--TTATAATCTTATAAATAATTTTAAATAGAAATATTTCTCTT--TTTTGGTT
63 GCTTTAAAT-GGTTTTATAATCTTATAAATGATTTTAAAT-CAAAT-TTT-TTTTCATTTTGGTT
* * * * * *
8827887 AAAATTA-ACCATAATTGGTTG-TTGACGTTGGGAAACATGAAGTAGAA
124 AAAA-TAGATCATAATTGGATGTTTG-CATTGAGAAACATGAAGCAAAA
* ** * * *
8827934 GCTATCCATTGACAAGAAAAGTCCATTTATTA-TCACTCATGTTTTTGAAAGCCTTGTAACTTGC
1 GCCATCCATTGACAAGAAAAGTCCATTTA-TAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGC
** * * * * * *
8827998 TCCAATTAGTTTTCTAATTTTATAAATGATTTCAAATCAAAATTTTTTTCATTGTT-GTTAAAAT
65 TTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAATTTTTTTTCATT-TTGGTTAAAAT
* * * * * **
8828062 AGATCATCATTGGTTGTTTGCATGGGGAAACATGTAGTGAAA
129 AGATCATAATTGGATGTTTGCATTGAGAAACATGAAGCAAAA
** * * * *
8828104 GCCATCCACAGACAAGACAAGTCCATTTATTGTCACTCATGCCTTTGAAAGCCTTGTTACAT-GA
1 GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTAC-TCGC
* * * * *
8828168 TTTAATTGGTTTAAAAATCTTATAAATGATTTTAAATCAAGTTTTTTTTTCATTTATAGTTAAAA
65 TTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAA-ATTTTTTTTCATTT-TGGTTAAAA
*
8828233 TAGATCAT-ATTGGATGTTTGCATTGAGAAACGTGAAGCAAAA
128 TAGATCATAATTGGATGTTTGCATTGAGAAACATGAAGCAAAA
* * * * * * ***
8828275 GTCATCCATTGATAGGAAATGTCCTTTTATAGTTACTCATGCCTTCGAAAGCCTTGTTACTAATT
1 GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCT
* * * * *
8828340 TTAAATGGTTTTATAATCTAATAAATTATTTTAAGTCAAAATATTTTTTGC-TTTTGTTTAAAAT
66 TTAAATGGTTTTATAATCTTATAAATGATTTTAAATC-AAAT-TTTTTTTCATTTTGGTTAAAAT
* * * ** ** *
8828404 CGATCATAATTGGATTTTTGCA-TCAGGAAAGGTGAAGCGGAT
129 AGATCATAATTGGATGTTTGCATTGA-GAAACATGAAGCAAAA
* * * * * * * *
8828446 GCCATCCATTAAGAAGAAAAGTCTATTTATATTCA-TAAATGCCATT-GAAAGCCTTGTCATTAG
1 GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACT-CATGCC-TTCGAAAGCCTTGTTACTCG
* * * * *
8828509 CTTTAAGTGGATTTATAGTCTTATAAATGATTTTAAATCAAAATATTTTTTCTTTTTGGTTAAAA
64 CTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATC-AAATTTTTTTTCATTTTGGTTAAAA
*** * *
8828574 TCTCTCGTAATTGGATGTTTGCATCGAGAAACAAT-AAGCAAACA
128 TAGATCATAATTGGATGTTTGCATTGAGAAAC-ATGAAGCAAA-A
* * * * * *
8828618 -ACATCCATTGACAACAAAAGTCCACTTATAGTCACTGATGACATT-GAAAGCCTTGTTAATCG-
1 GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG-CCTTCGAAAGCCTTGTTACTCGC
* * *
8828680 TTTGAAATGGTTTAATAATCTTATAAATGATTTTAGATC-AATTTTTTTTTATTTTTGGTTAAAA
65 TTT-AAATGGTTTTATAATCTTATAAATGATTTTAAATCAAATTTTTTTTCA-TTTTGGTTAAAA
* * **
8828744 -ATATCATAATTGGATGTTTGCATTGATAAACATGAAGCCGAA
128 TAGATCATAATTGGATGTTTGCATTGAGAAACATGAAGCAAAA
* * * * * * * *
8828786 GCCATCCATTAACAA-ACAAAGTCTATTTTTATTAACTCATGCCTTCGAAAGCTTTGTTAGTCGT
1 GCCATCCATTGACAAGA-AAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGC
* * * * * *
8828850 TTTAAATGGTTATATAATCTTATAACTGATTTTAAATGAAAATATTTTTT-GTTTTAGCTTAAAA
65 TTTAAATGGTTTTATAATCTTATAAATGATTTTAAAT-CAAATTTTTTTTCATTTT-GGTTAAAA
* * * * * *
8828914 TCGATCATAATTGGATATTTGCATTGGGAAACATGAAGTAGAT
128 TAGATCATAATTGGATGTTTGCATTGAGAAACATGAAGCAAAA
* * * * *
8828957 GCCATCCATGGATAA-ACAAAGTTCATTTATAGTCACTCATGCCATCAAAAGCCTTGTTACTCGC
1 GCCATCCATTGACAAGA-AAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGC
* * ** * *
8829021 TTTAAGTGGTTTTATAATCTTATATATGATTTTAAATTGAA-TTATTTTCATTTTTGGTTAAAAC
65 TTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAATTTTTTTTCA-TTTTGGTTAAAAT
* * * *
8829085 ATATCATAATTAGATGTTTGCATTGGGAAACATGAAGCGAAA
129 AGATCATAATTGGATGTTTGCATTGAGAAACATGAAGCAAAA
* * * * ** **
8829127 GCCTTACACTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTG-AAGCCTAATTACTCATT
1 GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCT
* * * * * ** ** *
8829191 TTAATTAGTTTTTTAATCTTATAAATGATTGTCAATCGATTTTTTTTTGTCAATCGATTTTTTTT
66 TTAAATGGTTTTATAATCTTATAAATGATTTTAAATC-AAATTTTTTT-TC-AT---TTTGGTTA
** *** *** * * * * * *
8829256 TCATCTTTGGC-TAAAACAGATCATAATTGGATGGTTGCATCATGAAATGTGAAGCGAAA
125 AAATAGAT--CAT-AATTGGAT-GT--TTGCA---TTG-A-GA-AACA--TGAAGCAAAA
* * * * * * * * *
8829315 GCCATCCATTGAGAAAAAAAGTGCTTTTATAATCACTTAT-CCATCGAAAGCCTTGTTAATTGCT
1 GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCT
* ** * * * * * * * **
8829379 TTAGATATTTTTGTAATCTTGTAAATAATTTTAAACCAAACTCTTTTTCATTTTTGTTAAAATCT
66 TTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAATTTTTTTTCATTTTGGTTAAAATAG
* * ** *
8829444 CTCATAATTGTATGTTTGCATT-AGGAAACATGAAGCGGAT
131 ATCATAATTGGATGTTTGCATTGA-GAAACATGAAGCAAAA
* * * * * *
8829484 GCCATCCATTGAGAAGAAAAGTCCATTTATAGCCACT-ACTACCTAT-GAAA-CCTTATTAATTG
1 GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCA-TGCCT-TCGAAAGCCTTGTTACTCG
* * *** **
8829546 CTTTAAATAGTTTTATAATCTTATAAATGATTTTTGCTTAAAATC-AATCATAACTAGATGTTTG
64 CTTTAAATGGTTTTATAATCTTATAAATGA---TT--TT-AAATCAAAT-TTTTTTTCAT-TTTG
* * * * * ** * * *
8829610 CATTAGGAAATGTGAAGC-GAATTGCATCCATTGACA-TGACAAGTCCATTTATAGTC---A
121 -GTTA--AAAT-AG-ATCATAATTGGAT-GTTTG-CATTGAGAA--ACA-TGA-AG-CAAAA
* * **** * * * ** ** **
8829667 -CTCATGCC-TTCAAAAGCCTTGTTTCTCACTTTA-AGTGATTTAATAATCTTATAAATGAGTTG
1 GC-CAT-CCATTGACAAGAAAAG--TC-CA-TTTATAGTCA-CTCAT-GCCTTCGAAA-GCCTTG
* * * * ** * ** * * *
8829729 -AAAT--C--AAAATTTGTTCCAT-TTCTAGTTATAACA-GATCAT-AATTAGA--TGTTTTCA-
57 TTACTCGCTTTAAA-TGGTTTTATAATC---TTATAA-ATGATTTTAAATCAAATTTTTTTTCAT
* * * * * ** ** *** *
8829783 -TTGG--AAAACATGAAGCA-AA-AGCCATCTATGTG-AAAGA-AAAC-TCCATTTATA
117 TTTGGTTAAAATA-G-ATCATAATTG-GATGT-T-TGCATTGAGAAACATGAAGCAAAA
* * ** * ** ** *
8829834 GTCA-CTCA-TGCCTTCG-AAAG-CC-----TAGTTACTCAT---TTTAAAATGTTTTG-TAAT-
1 GCCATC-CATTGAC-AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA-GCCTTGTTACTC
* * * *
8829885 GTTATAAATG--------AT-TT-TAAATCA----AAAT---ATTTTTTGT--TTTTGGTTAAAA
63 GCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAATTTTTTTTCATTTTGGTTAAAA
* * *
8829931 TAGAACATAATTGGATGTTTGCATT-AGGAAACATGAAGCAGAT
128 TAGATCATAATTGGATGTTTGCATTGA-GAAACATGAAGCAAAA
* *** * * * * *
8829974 GCCATCAATTG--GTTAAAAGTACATTTATAGTCACTCATGTCATT-GAAAGCTTTATTACTCAC
1 GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG-CCTTCGAAAGCCTTGTTACTCGC
* * ** **
8830036 TTTATATGGCTTTATAATCTTAT--ATGAAATTAAA-CAAATAATTTTTTTGTTTTTGGTTAAAA
65 TTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAT--TTTTTTTCATTTTGGTTAAAA
* * * *
8830098 TTGATCATAATTGGATGTTTGCA-TCAGTAAGCATGAAGCGATAA
128 TAGATCATAATTGGATGTTTGCATTGAG-AAACATGAAGC-AAAA
* * * * *
8830142 -CCATCCATTGAGAAGAAAAGTCCATTTATAGTCACTTAT-CTCGTCGAAAGCATTGTTACTTGC
1 GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC-CTTCGAAAGCCTTGTTACTCGC
* * * ** ** *
8830205 TTTAAATGGTTTTATATTCTTATAAATGATTTGAAATCAATTTTTTTTTGTTTTTCATTAAAATC
65 TTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAATTTTTTTTCATTTTGGTTAAAATA
** * * ** *
8830270 CCTCATAATTGGATGTTTGGA-TCAGGAAACATGAAGCGGAT
130 GATCATAATTGGATGTTTGCATTGA-GAAACATGAAGCAAAA
* * * * * * * *
8830311 GCCATCCATTGAGAAGAAAAGTTCATTTATAATCACTAATGCCATC-AAAGCC-TGTTAGTCTCA
1 GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCT
* * *
8830374 TTAAATGGTTTTATAATCTTATAAATAATTTTAAATCAAAATCTTTATTGTC--TTTGATTAAAA
66 TTAAATGGTTTTATAATCTTATAAATGATTTTAAATC-AAAT-TTT-TTTTCATTTTGGTTAAAA
* * * * *
8830437 TAGATCATAACTAGATGTTTGCATTG-GAAAACGTGAAACAAAT
128 TAGATCATAATTGGATGTTTGCATTGAG-AAACATGAAGCAAAA
* * * * * * *
8830480 GGCATCAATTGATAAGAAAAGTCCACTTATAGTCATTCATGGCTTCAAAAGCCTTGTTACAT-GC
1 GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTAC-TCGC
* * * ** ** * *
8830544 TTTAAGTGGTCTAATAATCAAATAAATGATTTT-AATCAAAACTTTTTTCATTTTTGGTCAAAAC
65 TTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAATTTTTTTTCA-TTTTGGTTAAAAT
* ** * * **
8830608 ATATCATAATTGGATGTTTGCATCAAGAAACGTCAAGTGAAA
129 AGATCATAATTGGATGTTTGCATTGAGAAACATGAAGCAAAA
* * * * * *
8830650 -CCAATCCATT-AGAAGAAAAGTTCATTTATAGTCAGTCATGCCTTCGAAAACCTAGTTACCCGC
1 GCC-ATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGC
* * * *
8830713 TTTAAATGATTTTATAATCTTATAAATAATTTTAAATCAAAATATTTTTCATTTTTGGTTAAAAT
65 TTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAATTTTTTTTCA-TTTTGGTTAAAAT
* * *** *
8830778 AGATCATAATTGGATGTTTGAATTGAAAAACATGAAGTGGAT
129 AGATCATAATTGGATGTTTGCATTGAGAAACATGAAGCAAAA
* * * * *
8830820 GCAATCCATTGACAAGAAAAGTCCATTTATAGTAACTCATGTCATCG-AAGCCTTGTTACTCACT
1 GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCT
* * * ** * *
8830884 TAAAATGGTTTTATAACCTTCT-AATGATTTCCAATCGAA-TTGTTTTCAATTTTGGTTAAAATA
66 TTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAATTTTTTTTC-ATTTTGGTTAAAATA
* * **
8830947 GACCATAATTGGATGTTTGCA-TCAGAAA-ATGTGAAGTGAAA
130 GATCATAATTGGATGTTTGCATTGAGAAACA--TGAAGCAAAA
* * * * * * * * * **
8830988 GCCATCTATTGAGAAAAAAAATCCATTTATAGCCACTAATACCATCAAAAGCCTTGTTACTTACT
1 GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCT
* * * ** **
8831053 CTAAATGGTTTAATAATCTTATAAATGATTTT-AATCAAA-TCTTTTTCATTTTCATT-AAATCC
66 TTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAATTTTTTTTCATTTTGGTTAAAATAG
* * * **** * * *
8831115 CTAATAATTGGATGTTTACATCCTTAAACAAGAAGCGAAT
131 ATCATAATTGGATGTTTGCATTGAGAAACATGAAGCAAAA
* * * * * * * * *
8831155 GCCATCCACTAAGAAGAAAAGTCCATTTATAATCACTAATGCCATCG-AAGTCTTGTTAGTCGAT
1 GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCT
* *
8831219 TTAAATGTTTTTATAATCTTATAAATGATTTTAAGCTCAAATT
66 TTAAATGGTTTTATAATCTTATAAATGATTTTAA-ATCAAATT
8831262 ATTATTTTTA
Statistics
Matches: 3532, Mismatches: 888, Indels: 532
0.71 0.18 0.11
Matches are distributed among these distances:
136 1 0.00
137 3 0.00
138 13 0.00
139 17 0.00
140 13 0.00
141 4 0.00
142 4 0.00
143 2 0.00
145 10 0.00
147 5 0.00
148 6 0.00
149 8 0.00
152 13 0.00
154 1 0.00
155 3 0.00
156 3 0.00
157 9 0.00
158 2 0.00
159 1 0.00
161 3 0.00
162 1 0.00
163 3 0.00
164 4 0.00
165 12 0.00
166 154 0.04
167 155 0.04
168 179 0.05
169 752 0.21
170 891 0.25
171 828 0.23
172 164 0.05
173 6 0.00
174 6 0.00
175 15 0.00
176 7 0.00
177 14 0.00
178 1 0.00
179 8 0.00
180 16 0.00
181 11 0.00
182 16 0.00
183 16 0.00
184 4 0.00
185 13 0.00
186 16 0.00
187 18 0.01
188 95 0.03
189 4 0.00
190 2 0.00
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (170 bp):
GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCT
TTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAATTTTTTTTCATTTTGGTTAAAATAG
ATCATAATTGGATGTTTGCATTGAGAAACATGAAGCAAAA
Found at i:8829242 original size:18 final size:18
Alignment explanation
Indices: 8829219--8829256 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
8829209 TTATAAATGA
8829219 TTGTCAATCGATTTTTTT
1 TTGTCAATCGATTTTTTT
8829237 TTGTCAATCGATTTTTTT
1 TTGTCAATCGATTTTTTT
8829255 TT
1 TT
8829257 CATCTTTGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.16, C:0.11, G:0.11, T:0.63
Consensus pattern (18 bp):
TTGTCAATCGATTTTTTT
Found at i:8830717 original size:508 final size:503
Alignment explanation
Indices: 8829634--8831104 Score: 1303
Period size: 508 Copynumber: 2.9 Consensus size: 503
8829624 AAGCGAATTG
* * * * * * * * *
8829634 CATCCATTGACATGACAAGTCCATTTATAGTCACTCATGC-CTTC-AAAAGCCTTGTTTCTCACT
1 CATCCATTGAGAAGAAAAGTCCATTTATAGTCACTCAT-CTCGTCGAAAA-CATAGTTACCCGCT
* * * * * * *
8829697 TTAAGTGATTTAATAATCTTATAAATGAGTTGAAATCAAAAT-TTGTTCCATTTCT-AGTTATAA
64 TTAAATGATTTTATAATCTTATAAATAATTTGAAATCAAAATATT-TTTCATTTTTCA-TTAAAA
* * * ** * * ** * * *
8829760 CAGATCATAATTAGATGTTTTCATTGGAAAACATGAAGCAAAAGCCATCTATGTGAAAGAAAACT
127 TACATCATAATTGGATGTTTGAATAGAAAAACATGAAGCGGATGCCATCCAT-TGAAAGAAAAGT
* * *
8829825 CCATTTATAGTCACTCATGCCTTCGAAAGCCTAGTTACTCATTTTAAAAT-GTTTTGTAATGTTA
191 CCATTTATAGTCACTCATGCCATC-AAAGCCT-GTTACTCA-TTTAAAATGGTTTTATAATCTTA
8829889 TAAATGATTTTAAATCAAAATATTTTTTGTTTTTGGTTAAAATAGAACATAATTGGATGTTTGCA
253 TAAATGATTTTAAATCAAAATA-TTTTTG-TTTTGGTTAAAATAGAACATAATTGGATGTTTGCA
* * * * * * *
8829954 TTAGG-AAACATGAAGCAGATGCCATCAATTGGT--TAAAAGTACATTTATAGTCACTCATGTCA
316 TT-GGAAAACGTGAAACAAATGCCATCAATTGATAAAAAAAGTCCATTTATAGTCACTCATG-CC
* * * * * * ** * *
8830016 TT-GAAAGCTTTATTACTCACTTTATATGG-CTTTATAATCTTATATGAAATTAAACAAATAATT
379 TTCAAAAGCCTTGTTACT-ACTTTA-ATGGTC-TAATAATCATAAATGATTTTAATCAAA-ACTT
** * * * *
8830079 TTTTTGTTTTTGGTTAAAATTGATCATAATTGGATGTTTGCATCAGTAAGCATGAAGCGATAAC
440 TTTTCATTTTTGGTCAAAAATGATCATAATTGGATGTTTGCATCAGTAAACATCAAGCGATAAC
* * * **
8830143 CATCCATTGAGAAGAAAAGTCCATTTATAGTCACTTATCTCGTCGAAAGCATTGTTACTTGCTTT
1 CATCCATTGAGAAGAAAAGTCCATTTATAGTCACTCATCTCGTCGAAAACATAGTTACCCGCTTT
* * * * * ** * *
8830208 AAATGGTTTTATATTCTTATAAATGATTTGAAATC-AATTTTTTTTTGTTTTTCATTAAAATCCC
66 AAATGATTTTATAATCTTATAAATAATTTGAAATCAAAATATTTTTCATTTTTCATTAAAATACA
* * *
8830272 TCATAATTGGATGTTTGGATCAG-GAAACATGAAGCGGATGCCATCCATTGAGAAGAAAAGTTCA
131 TCATAATTGGATGTTTGAAT-AGAAAAACATGAAGCGGATGCCATCCATTGA-AAGAAAAGTCCA
* *
8830336 TTTATAATCACTAATGCCATCAAAGCCTGTTAGTCTCA-TT-AAATGGTTTTATAATCTTATAAA
194 TTTATAGTCACTCATGCCATCAAAGCCTGTTA--CTCATTTAAAATGGTTTTATAATCTTATAAA
* * * * * *
8830399 TAATTTTAAATCAAAATCTTTATTGTCTTTGATTAAAATAGATCATAACTAGATGTTTGCATTGG
257 TGATTTTAAATCAAAATATTT-TTGT-TTTGGTTAAAATAGAACATAATTGGATGTTTGCATTGG
* * * * *
8830464 AAAACGTGAAACAAATGGCATCAATTGATAAGAAAAGTCCACTTATAGTCATTCATGGCTTCAAA
320 AAAACGTGAAACAAATGCCATCAATTGATAAAAAAAGTCCATTTATAGTCACTCATGCCTTCAAA
*
8830529 AGCCTTGTTACATGCTTTAAGTGGTCTAATAATCAAATAAATGATTTTAATCAAAACTTTTTTCA
385 AGCCTTGTTAC-TACTTTAA-TGGTCTAATAATC--ATAAATGATTTTAATCAAAACTTTTTTCA
* *
8830594 TTTTTGGTCAAAACAT-ATCATAATTGGATGTTTGCATCAAG-AAACGTCAAGTGA-AAC
446 TTTTTGGTCAAAA-ATGATCATAATTGGATGTTTGCATC-AGTAAACATCAAGCGATAAC
* * * *
8830651 CAATCCATT-AGAAGAAAAGTTCATTTATAGTCAGTCATGC-CTTCGAAAACCTAGTTACCCGCT
1 C-ATCCATTGAGAAGAAAAGTCCATTTATAGTCACTCAT-CTCGTCGAAAACATAGTTACCCGCT
* **
8830714 TTAAATGATTTTATAATCTTATAAATAATTTTAAATCAAAATATTTTTCATTTTTGGTTAAAATA
64 TTAAATGATTTTATAATCTTATAAATAATTTGAAATCAAAATATTTTTCATTTTTCATTAAAATA
* * * *
8830779 GATCATAATTGGATGTTTGAATTGAAAAACATGAAGTGGATGCAATCCATTGACAAGAAAAGTCC
129 CATCATAATTGGATGTTTGAATAGAAAAACATGAAGCGGATGCCATCCATTGA-AAGAAAAGTCC
* * * * * *
8830844 ATTTATAGTAACTCATGTCATCGAAGCCTTGTTACTCACTTAAAATGGTTTTATAACCTTCT-AA
193 ATTTATAGTCACTCATGCCATCAAAGCC-TGTTACTCATTTAAAATGGTTTTATAATCTTATAAA
** * * * ** * **
8830908 TGATTTCCAATCGAATTGTTTTCAATTTTGGTTAAAATAGACCATAATTGGATGTTTGCATCAGA
257 TGATTTTAAATCAAAATATTTT-TGTTTTGGTTAAAATAGAACATAATTGGATGTTTGCATTGGA
* ** * * * * * * *
8830973 AAATGTGAAGTGAAA-GCCATCTATTGAGAAAAAAAATCCATTTATAGCCACTAATACCATCAAA
321 AAACGTGAA-ACAAATGCCATCAATTGATAAAAAAAGTCCATTTATAGTCACTCATGCCTTCAAA
* * *
8831037 AGCCTTGTTACTTACTCTAAATGGTTTAATAATCTTATAAATGATTTTAATCAAATC-TTTTTCA
385 AGCCTTGTTAC-TACT-TTAATGGTCTAATAATC--ATAAATGATTTTAATCAAAACTTTTTTCA
8831101 TTTT
446 TTTT
8831105 CATTAAATCC
Statistics
Matches: 781, Mismatches: 149, Indels: 66
0.78 0.15 0.07
Matches are distributed among these distances:
505 10 0.01
506 96 0.12
507 24 0.03
508 342 0.44
509 266 0.34
510 43 0.06
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (503 bp):
CATCCATTGAGAAGAAAAGTCCATTTATAGTCACTCATCTCGTCGAAAACATAGTTACCCGCTTT
AAATGATTTTATAATCTTATAAATAATTTGAAATCAAAATATTTTTCATTTTTCATTAAAATACA
TCATAATTGGATGTTTGAATAGAAAAACATGAAGCGGATGCCATCCATTGAAAGAAAAGTCCATT
TATAGTCACTCATGCCATCAAAGCCTGTTACTCATTTAAAATGGTTTTATAATCTTATAAATGAT
TTTAAATCAAAATATTTTTGTTTTGGTTAAAATAGAACATAATTGGATGTTTGCATTGGAAAACG
TGAAACAAATGCCATCAATTGATAAAAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTT
GTTACTACTTTAATGGTCTAATAATCATAAATGATTTTAATCAAAACTTTTTTCATTTTTGGTCA
AAAATGATCATAATTGGATGTTTGCATCAGTAAACATCAAGCGATAAC
Found at i:8830747 original size:169 final size:169
Alignment explanation
Indices: 8826419--8829579 Score: 1672
Period size: 171 Copynumber: 18.5 Consensus size: 169
8826409 ATCTATTTAC
* * * *
8826419 AAGAAAAGTCTATTTATTGTCACTCATCCCTTCGAAAGCCTAGTTACT-AGCTTTAAATGGTTTT
1 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCA-CTTTAAATGGTTTT
* * * * * **
8826483 ATAATCTTATAAATGATTTTAAAACAAAATATTTTTTATTTTCGGTTAAAATAGAACATTATTTT
65 ATAATCTTATAAATGATTTT-AATCAAAAT-TTTTTCATTTTTGGTTAAAATAGATCATAATTGG
* ** * **** *
8826548 ATGTTTGAAT-TGGGAAACATGAAGCTGATGTTATCCA-TAAGG
128 ATGTTTGCATCAAGAAAACATGAAG-TGAAACCATCCATTGA-G
* * * * * *
8826590 AAGAACAGTACATTTATAGTCACTCATGCCATCGATAGCCTTATTACTCGCTTTAAATGG-TTTA
1 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCACTTTAAATGGTTTTA
* * *** *
8826654 TAATCTTATAAATGATTTTAAATCAAAATATTTTTCATCTTTAGTTAAAATCCCTTATAATTGGA
66 TAATCTTATAAATGATTTT-AATCAAAAT-TTTTTCATTTTTGGTTAAAATAGATCATAATTGGA
* * * **** *
8826719 TGTTTTCATC-AGGAAACATGAAGCAGATGTAATCCATTGAC
129 TGTTTGCATCAAGAAAACATGAAG-TGAAACCATCCATTGAG
* * * * * *
8826760 AAGAAAAGTCTATATATAGTTACCCATGCCATC-AAAGCCTTGTTACTCACTTTAAATTGTTTTA
1 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCACTTTAAATGGTTTTA
* * ** * *
8826824 TAACCTTATAAATAATTTTTAATTGAATTTTTTTCATTTTTGGTCAAAATAGATCATAATTGGAT
66 TAATCTTATAAATGA-TTTTAATCAAAATTTTTTCATTTTTGGTTAAAATAGATCATAATTGGAT
* ** * * *
8826889 GCTTGCATCAAGAAATGA-GAAGCGAAAGCTATCTATTGAG
130 GTTTGCATCAAGAAAACATGAAGTGAAA-CCATCCATTGAG
* * * * * * * ** * *
8826929 AAGAAAAAGTCCATATGTAGCCACTCATCCCATCG-ACGCTTTGTTACTTGCTCTAAAAGGTTTT
1 AAG-AAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCACTTTAAATGGTTTT
* ** *** * *
8826993 ATAATCTTATAAAT-ATTTTAAATCAAAATATTTTTCATGTTTCATTAAAATCCCTAATAATTGA
65 ATAATCTTATAAATGATTTT-AATCAAAAT-TTTTTCATTTTTGGTTAAAATAGATCATAATTGG
** * *
8827057 ACATTTGCAT--AGAGAAACATGAACT-AAATGCCATCCATTAAG
128 ATGTTTGCATCAAGA-AAACATGAAGTGAAA--CCATCCATTGAG
* * * * * * * * *
8827099 AAGAAAAGTCCACTAATAGTCACTAATGCCTTCAAAAGACTTGTTACCCCGCTCTT-AATGATTA
1 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTA-CTCACT-TTAAATGGTTT
* * *
8827163 TATAATCTTATAACTGAATTTAAATCAAAATCTTTTTCATTCTTGGTTAAAATTA-ATCATAATT
64 TATAATCTTATAAATG-ATTTTAATCAAAAT-TTTTTCATTTTTGGTTAAAA-TAGATCATAATT
* ** * * ** ** *
8827227 GGATGTTTCCAT-TGGGAAACTTGAAACAGATGCCATCAATTGAG
126 GGATGTTTGCATCAAGAAAACATG-AAGTGAAACCATCCATTGAG
* * * * * ** * *
8827271 AAAAAAAATCCATTAATAGTCACCCATGCCATT-GAAAGCCTTGTTAGTTGCGTAAAATGGTTTT
1 AAGAAAAGTCCATTTATAGTCACTCATGCC-TTCGAAAGCCTTGTTACTCACTTTAAATGGTTTT
* ** ** *
8827335 ATAATCTTATAAATAATTTTAAAGAAACATCATTT--TTTTT-GTTTAAATCA-ATCATAATTGG
65 ATAATCTTATAAATGATTTTAATCAAA-ATTTTTTCATTTTTGGTTAAAAT-AGATCATAATTGG
* ** *
8827396 AT-TTTGCAT-TAGAAAACATGAAGTAGATGCCATCCATTGAC
128 ATGTTTGCATCAAGAAAACATGAAGT-GAAACCATCCATTGAG
* * * ** * *
8827437 AACAAAAGTCCATTTATAGTCACTTATGCCTTCGAAAGCCTTGTTTCTTGCTTTAAATGGTATAA
1 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCACTTTAAATGGTTTTA
* * * * * *
8827502 TAATCTTATAAATGATTTTAAATC-ATATTTTTTCCTTTCTAGTTAAAACATATCATAATTGGAT
66 TAATCTTATAAATGATTTT-AATCAAAATTTTTTCATTTTTGGTTAAAATAGATCATAATTGGAT
* * * ** ***
8827566 GTTTGAATCGAG-AAACGTGAAGCAAAAGTTGTCCATTG-G
130 GTTTGCATCAAGAAAACATGAAGTGAAA-CCATCCATTGAG
* * *
8827605 CAAGAAAAGTCTATTTATAGTCACTCATGCCCAT-GAAAGCCTTGTTACTCACTTTAAATAGTTT
1 -AAGAAAAGTCCATTTATAGTCACTCATG-CCTTCGAAAGCCTTGTTACTCACTTTAAATGGTTT
* * * *** *
8827669 TATAATCTTACAAATGACTTTAAATCAAAATCTTTTTCCTTTTTGGTTAAAATCCCTCTTAATTG
64 TATAATCTTATAAATGA-TTTTAATCAAAAT-TTTTTCATTTTTGGTTAAAATAGATCATAATTG
* * * ** *
8827734 GATGCTTGTATCAAG-AAACATTAAACGAATGCCATCCATTG-G
127 GATGTTTGCATCAAGAAAACATGAAGTGAA-ACCATCCATTGAG
* * *
8827776 CAA-AAAGAG-CCTATTTATAGTCATTCAT-CCTATCGAAAGCCTTATTACTCACTTCAAATAGG
1 -AAGAAA-AGTCC-ATTTATAGTCACTCATGCCT-TCGAAAGCCTTGTTACTCACTTTAAAT-GG
* * * *
8827838 --TTATAATCTTATAAATAATTTTAAAT-AGAAATATTTCTCTTTTTTGGTTAAAATTA-ACCAT
61 TTTTATAATCTTATAAATGATTTT-AATCA-AAAT-TTTTTCATTTTTGGTTAAAA-TAGATCAT
* * ** * * * *
8827899 AATTGGTTG-TTGACGT-TGGGAAACATGAAGTAGAAGCTATCCATTGAC
122 AATTGGATGTTTG-CATCAAGAAAACATGAAGT-GAAACCATCCATTGAG
** * * ** ** * *
8827947 AAGAAAAGTCCATTTATTA-TCACTCATGTTTTTGAAAGCCTTGTAACTTGCTCCAATTAGTTTT
1 AAGAAAAGTCCATTTA-TAGTCACTCATGCCTTCGAAAGCCTTGTTACTCACTTTAAATGGTTTT
* * * * *
8828011 CTAATTTTATAAATGATTTCAAATCAAAATTTTTTTCATTGTT-GTTAAAATAGATCATCATTGG
65 ATAATCTTATAAATGATTT-TAATCAAAA-TTTTTTCATTTTTGGTTAAAATAGATCATAATTGG
* ** * * ** *
8828075 TTGTTTGCAT-GGGGAAACATGTAGTGAAAGCCATCCACAGAC
128 ATGTTTGCATCAAGAAAACATGAAGTGAAA-CCATCCATTGAG
* * * * * *
8828117 AAGACAAGTCCATTTATTGTCACTCATGCCTTTGAAAGCCTTGTTACATGA-TTTAATTGGTTTA
1 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTAC-TCACTTTAAATGGTTTT
* ** * *
8828181 AAAATCTTATAAATGATTTTAAATCAAGTTTTTTTTTCATTTATAGTTAAAATAGATCAT-ATTG
65 ATAATCTTATAAATGATTTT-AATCAA--AATTTTTTCATTTTTGGTTAAAATAGATCATAATTG
** * ** * *
8828245 GATGTTTGCATTGAG-AAACGTGAAGCAAAAGTCATCCATTGAT
127 GATGTTTGCATCAAGAAAACATGAAGTGAAA-CCATCCATTGAG
* * * * * *
8828288 AGGAAATGTCCTTTTATAGTTACTCATGCCTTCGAAAGCCTTGTTACTAATTTTAAATGGTTTTA
1 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCACTTTAAATGGTTTTA
* * *** * *
8828353 TAATCTAATAAATTATTTTAAGTCAAAATATTTTTTGCTTTTGTTTAAAATCGATCATAATTGGA
66 TAATCTTATAAATGATTTTAA-TCAAAAT-TTTTTCATTTTTGGTTAAAATAGATCATAATTGGA
* * ** * ** *
8828418 TTTTTGCATC-AGGAAAGGTGAAGCGGATGCCATCCATTAAG
129 TGTTTGCATCAAGAAAACATGAAG-TGAAACCATCCATTGAG
* * * * * * *
8828459 AAGAAAAGTCTATTTATATTCA-TAAATGCCATT-GAAAGCCTTGTCA-TTAGCTTTAAGTGGAT
1 AAGAAAAGTCCATTTATAGTCACT-CATGCC-TTCGAAAGCCTTGTTACTCA-CTTTAAATGGTT
* *** *
8828521 TTATAGTCTTATAAATGATTTTAAATCAAAATATTTTTTC-TTTTTGGTTAAAATCTCTCGTAAT
63 TTATAATCTTATAAATGATTTT-AATC-AAA-ATTTTTTCATTTTTGGTTAAAATAGATCATAAT
* * *
8828585 TGGATGTTTGCATCGAG-AAACAAT-AAG-CAAACAACATCCATTGAC
125 TGGATGTTTGCATCAAGAAAAC-ATGAAGTGAAAC--CATCCATTGAG
* * * * * *
8828630 AACAAAAGTCCACTTATAGTCACTGATGACATT-GAAAGCCTTGTTAATC-GTTTGAAATGGTTT
1 AAGAAAAGTCCATTTATAGTCACTCATG-CCTTCGAAAGCCTTGTTACTCACTTT-AAATGGTTT
* ** * *
8828693 AATAATCTTATAAATGATTTTAGATCAATTTTTTTTTATTTTTGGTTAAAA-ATATCATAATTGG
64 TATAATCTTATAAATGATTTTA-ATCAAAATTTTTTCATTTTTGGTTAAAATAGATCATAATTGG
* * * * *
8828757 ATGTTTGCAT--TGATAAACATGAAGCCGAAGCCATCCATTAAC
128 ATGTTTGCATCAAGA-AAACATGAAG-TGAAACCATCCATTGAG
* * * * * * ** *
8828799 AA-ACAAAGTCTATTTTTATTAACTCATGCCTTCGAAAGCTTTGTTAGTCGTTTTAAATGGTTAT
1 AAGA-AAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCACTTTAAATGGTTTT
* * ** * * *
8828863 ATAATCTTATAACTGATTTTAAATGAAAATATTTTTTGTTTTAGCTTAAAATCGATCATAATTGG
65 ATAATCTTATAAATGATTTT-AATCAAAAT-TTTTTCATTTTTGGTTAAAATAGATCATAATTGG
* ** * ** * *
8828928 ATATTTGCAT-TGGGAAACATGAAGTAGATGCCATCCATGGAT
128 ATGTTTGCATCAAGAAAACATGAAGT-GAAACCATCCATTGAG
* * * * *
8828970 AA-ACAAAGTTCATTTATAGTCACTCATGCCATCAAAAGCCTTGTTACTCGCTTTAAGTGGTTTT
1 AAGA-AAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCACTTTAAATGGTTTT
* ** * * *
8829034 ATAATCTTATATATGATTTTAAAT-TGAATTATTTTCATTTTTGGTTAAAACATATCATAATTAG
65 ATAATCTTATAAATGATTTT-AATCAAAATT-TTTTCATTTTTGGTTAAAATAGATCATAATTGG
** * * * * * *
8829098 ATGTTTGCAT-TGGGAAACATGAAGCGAAAGCCTTACACTGAC
128 ATGTTTGCATCAAGAAAACATGAAGTGAAA-CCATCCATTGAG
* ** * * * *
8829140 AAGAAAAGTCCATTTATAGTCACTCATGCCTTTG-AAGCCTAATTACTCATTTTAATTAGTTTTT
1 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCACTTTAAATGGTTTTA
* * *
8829204 TAATCTTATAAATGATTGTCAATCGATTTTTTTTTGTCAATCGATTTTTTTTTCATCTTTGGCTA
66 TAATCTTATAAATGATT-TTAATC-A------------AA---ATTTT---TTCATTTTTGGTTA
* * * ** *
8829269 AAACAGATCATAATTGGATGGTTGCATCATG-AAATGTGAAGCGAAAGCCATCCATTGAG
111 AAATAGATCATAATTGGATGTTTGCATCAAGAAAACATGAAGTGAAA-CCATCCATTGAG
* * * * * * * ** * ** *
8829328 AAAAAAAGTGCTTTTATAATCACTTAT-CCATCGAAAGCCTTGTTAATTGCTTTAGATATTTTTG
1 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCACTTTAAATGGTTTTA
* * * * *** *
8829392 TAATCTTGTAAATAATTTTAAACCAAACTCTTTTTCATTTTT-GTTAAAATCTCTCATAATTGTA
66 TAATCTTATAAATGATTTT-AATCAAAAT-TTTTTCATTTTTGGTTAAAATAGATCATAATTGGA
* * * **
8829456 TGTTTGCAT-TAGGAAACATGAAGCGGATGCCATCCATTGAG
129 TGTTTGCATCAAGAAAACATGAAG-TGAAACCATCCATTGAG
* * * * ** *
8829497 AAGAAAAGTCCATTTATAGCCACT-ACTACCTAT-GAAA-CCTTATTAATTGCTTTAAATAGTTT
1 AAGAAAAGTCCATTTATAGTCACTCA-TGCCT-TCGAAAGCCTTGTTACTCACTTTAAATGGTTT
8829559 TATAATCTTATAAATGATTTT
64 TATAATCTTATAAATGATTTT
8829580 TGCTTAAAAT
Statistics
Matches: 2310, Mismatches: 538, Indels: 286
0.74 0.17 0.09
Matches are distributed among these distances:
165 9 0.00
166 99 0.04
167 28 0.01
168 41 0.02
169 477 0.21
170 678 0.29
171 694 0.30
172 134 0.06
173 16 0.01
174 1 0.00
175 2 0.00
183 1 0.00
185 2 0.00
186 3 0.00
187 6 0.00
188 118 0.05
189 1 0.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (169 bp):
AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCACTTTAAATGGTTTTA
TAATCTTATAAATGATTTTAATCAAAATTTTTTCATTTTTGGTTAAAATAGATCATAATTGGATG
TTTGCATCAAGAAAACATGAAGTGAAACCATCCATTGAG
Found at i:8831605 original size:170 final size:170
Alignment explanation
Indices: 8831301--8831660 Score: 436
Period size: 170 Copynumber: 2.1 Consensus size: 170
8831291 GAGTGAATTG
* * *
8831301 CATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCCTTAAAAGCCTTATTACTCGCTTT
1 CATCCATTGACAAGAAAAGTCCATTTATAATCACTCATGCCCTTAAAAGCCTCATTACTCACTTT
** * * ** *
8831366 AGGTGGCTTAATAATGTTTTAAATGATTTTAAATCAATTTTTTTTCATTTTTAGTTAAAACAAAT
66 AAATGGCTTAATAATGTTTTAAATAAGTTTAAATCAAAGTATTTTCATTTTTAGTTAAAACAAAT
* *
8831431 CATAATTGGATGTTTGCATCGAGAAACATAAAGCAGAAGC
131 CATAATCGGATGCTTGCATCGAGAAACATAAAGCAGAAGC
* * * *
8831471 CATCCATTGGCAAGAAAAGTTCATTTATAATCACTCATGCCTTTGAAAGCCTCATTACTCACTTT
1 CATCCATTGACAAGAAAAGTCCATTTATAATCACTCATGCCCTTAAAAGCCTCATTACTCACTTT
* * * * ** *
8831536 AAATGGTTTTATAAT-TTTATAAATAAGTTTAAATCAAAGTATTTT-GTGTTTTGGTTAAATGAG
66 AAATGGCTTAATAATGTTT-TAAATAAGTTTAAATCAAAGTATTTTCAT-TTTTAGTTAAAACAA
* * *
8831599 ATCATAATCGGATGCTTGCATCGAGAAACATGAAGCGGATGC
129 ATCATAATCGGATGCTTGCATCGAGAAACATAAAGCAGAAGC
* *
8831641 CATCCATTTATAAGAAAAGT
1 CATCCATTGACAAGAAAAGT
8831661 ACTGGCTCCA
Statistics
Matches: 159, Mismatches: 29, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
169 4 0.03
170 155 0.97
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (170 bp):
CATCCATTGACAAGAAAAGTCCATTTATAATCACTCATGCCCTTAAAAGCCTCATTACTCACTTT
AAATGGCTTAATAATGTTTTAAATAAGTTTAAATCAAAGTATTTTCATTTTTAGTTAAAACAAAT
CATAATCGGATGCTTGCATCGAGAAACATAAAGCAGAAGC
Found at i:8832527 original size:67 final size:67
Alignment explanation
Indices: 8832406--8832563 Score: 174
Period size: 67 Copynumber: 2.4 Consensus size: 67
8832396 TGATTGTTGT
* * * * *
8832406 AGGTTGTGGTTGAACCTTGGAAAAACCACTTTGGGTTTTACTTTAGCCCGTGAAAAACTAGTG-T
1 AGGTTGTGGTTGAGCCTTTGAAAAACCACTTTGGGTTTTACTTGAGCCCATGAAAAACCAGTGCT
8832470 AAA
66 -AA
* ** * * *
8832473 AGGTTGTGGTTGAGCCTTTGAAAAATCACTTTGGGTTTTTGTTGATCTCATGAAAAACCATTGCT
1 AGGTTGTGGTTGAGCCTTTGAAAAACCACTTTGGGTTTTACTTGAGCCCATGAAAAACCAGTGCT
8832538 AA
66 AA
* * *
8832540 AGGTTGTGGCTGAGCATGTGAAAA
1 AGGTTGTGGTTGAGCCTTTGAAAA
8832564 GCCATTGTAA
Statistics
Matches: 76, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
67 75 0.99
68 1 0.01
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.33
Consensus pattern (67 bp):
AGGTTGTGGTTGAGCCTTTGAAAAACCACTTTGGGTTTTACTTGAGCCCATGAAAAACCAGTGCT
AA
Found at i:8833808 original size:22 final size:21
Alignment explanation
Indices: 8833783--8833823 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
8833773 AAGGAAGAAA
8833783 AGAAAGAAAACAAAGGGGAACT
1 AGAAA-AAAACAAAGGGGAACT
**
8833805 AGAAAAATTCAAAGGGGAA
1 AGAAAAAAACAAAGGGGAA
8833824 TTCGCGTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.59, C:0.07, G:0.27, T:0.07
Consensus pattern (21 bp):
AGAAAAAAACAAAGGGGAACT
Found at i:8836855 original size:20 final size:18
Alignment explanation
Indices: 8836810--8836849 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
8836800 GTCCATTGTT
*
8836810 GAAAGATGAAAATCCCAA
1 GAAAAATGAAAATCCCAA
8836828 GAAAAATGAGAAAT-CCAA
1 GAAAAATGA-AAATCCCAA
8836846 GAAA
1 GAAA
8836850 GCAATGGAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.60, C:0.12, G:0.17, T:0.10
Consensus pattern (18 bp):
GAAAAATGAAAATCCCAA
Found at i:8839630 original size:2 final size:2
Alignment explanation
Indices: 8839623--8839678 Score: 84
Period size: 2 Copynumber: 30.0 Consensus size: 2
8839613 TGATGATGGG
8839623 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA TA TA -A
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8839663 TA TA -A TA TA TA -A TA TA
1 TA TA TA TA TA TA TA TA TA
8839679 AAAATTGGCC
Statistics
Matches: 50, Mismatches: 0, Indels: 8
0.86 0.00 0.14
Matches are distributed among these distances:
1 4 0.08
2 46 0.92
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (2 bp):
TA
Found at i:8847051 original size:43 final size:43
Alignment explanation
Indices: 8846981--8847112 Score: 174
Period size: 43 Copynumber: 3.1 Consensus size: 43
8846971 GTATTGATAT
* *
8846981 TGACTCAGCTATGTGTGAGTAGGGAGTGCGCATAAGCTGATGA
1 TGACCCAGCTATGTGCGAGTAGGGAGTGCGCATAAGCTGATGA
* * * * *
8847024 TGACCCGGTTATGTGCGAGTAGGGAGTGCGCATAAACCGGTGA
1 TGACCCAGCTATGTGCGAGTAGGGAGTGCGCATAAGCTGATGA
* * *
8847067 TGACCCAGCCATGTGCGAGTAGGGAGTGCACATGAGCTGATGA
1 TGACCCAGCTATGTGCGAGTAGGGAGTGCGCATAAGCTGATGA
8847110 TGA
1 TGA
8847113 TGGGATGGTG
Statistics
Matches: 74, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 74 1.00
ACGTcount: A:0.25, C:0.17, G:0.36, T:0.22
Consensus pattern (43 bp):
TGACCCAGCTATGTGCGAGTAGGGAGTGCGCATAAGCTGATGA
Found at i:8847134 original size:23 final size:23
Alignment explanation
Indices: 8847104--8847162 Score: 109
Period size: 23 Copynumber: 2.6 Consensus size: 23
8847094 GCACATGAGC
8847104 TGATGATGATGGGATGGTGTGCA
1 TGATGATGATGGGATGGTGTGCA
8847127 TGATGATGATGGGATGGTGTGCA
1 TGATGATGATGGGATGGTGTGCA
*
8847150 TGATAATGATGGG
1 TGATGATGATGGG
8847163 TATATATATA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.24, C:0.03, G:0.42, T:0.31
Consensus pattern (23 bp):
TGATGATGATGGGATGGTGTGCA
Found at i:8849988 original size:22 final size:21
Alignment explanation
Indices: 8849949--8849989 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
8849939 CCTAGGTGGA
**
8849949 AAAATTCAAGGGGAAAGTGTG
1 AAAATTCAAGGAAAAAGTGTG
8849970 AAAATTCAAGGAAACAAGTG
1 AAAATTCAAGGAAA-AAGTG
8849990 AAAAAAAGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.49, C:0.07, G:0.27, T:0.17
Consensus pattern (21 bp):
AAAATTCAAGGAAAAAGTGTG
Found at i:8849995 original size:22 final size:21
Alignment explanation
Indices: 8849948--8849995 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
8849938 CCCTAGGTGG
** *
8849948 AAAAATTCAAGGGGAAAGTGT
1 AAAAATTCAAGGAAAAAGTGA
*
8849969 GAAAATTCAAGGAAACAAGTGA
1 AAAAATTCAAGGAAA-AAGTGA
8849991 AAAAA
1 AAAAA
8849996 AGGTAAGATT
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.56, C:0.06, G:0.23, T:0.15
Consensus pattern (21 bp):
AAAAATTCAAGGAAAAAGTGA
Found at i:8860064 original size:29 final size:29
Alignment explanation
Indices: 8860025--8860082 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
8860015 ATAATAATTA
8860025 TTTTTTTTTCTTTATTTCTTCCTTTCTTT
1 TTTTTTTTTCTTTATTTCTTCCTTTCTTT
* *
8860054 TTTTTTTTTCTTTCTTTCTTTCTTTCTTT
1 TTTTTTTTTCTTTATTTCTTCCTTTCTTT
8860083 CCTATCTCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.81
Consensus pattern (29 bp):
TTTTTTTTTCTTTATTTCTTCCTTTCTTT
Found at i:8860067 original size:4 final size:4
Alignment explanation
Indices: 8860031--8860083 Score: 67
Period size: 4 Copynumber: 14.0 Consensus size: 4
8860021 ATTATTTTTT
* *
8860031 TTTC TTTA TTTC TTCC TTTC TTT- TTT- TTT- TTTC TTTC TTTC TTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC
8860076 TTTC TTTC
1 TTTC TTTC
8860084 CTATCTCTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
3 9 0.20
4 35 0.80
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTC
Found at i:8860267 original size:33 final size:33
Alignment explanation
Indices: 8860220--8860311 Score: 130
Period size: 33 Copynumber: 2.7 Consensus size: 33
8860210 CTAGCTCTCA
* *
8860220 TTTTCTCTCCCAAATTTGTAGCAAAACTCTTTCT
1 TTTTC-CTCTCAAATTTGCAGCAAAACTCTTTCT
8860254 TTTTCCTCTCAAATTTGCAGCAAAACTCTTTCT
1 TTTTCCTCTCAAATTTGCAGCAAAACTCTTTCT
8860287 TTTTCCCTCTCAAAATTTTGCAGCA
1 TTTT-CCTCTC-AAA-TTTGCAGCA
8860312 CAAGGCCTCT
Statistics
Matches: 53, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
33 30 0.57
34 11 0.21
35 3 0.06
36 9 0.17
ACGTcount: A:0.24, C:0.27, G:0.07, T:0.42
Consensus pattern (33 bp):
TTTTCCTCTCAAATTTGCAGCAAAACTCTTTCT
Found at i:8864187 original size:171 final size:167
Alignment explanation
Indices: 8863945--8864254 Score: 408
Period size: 171 Copynumber: 1.8 Consensus size: 167
8863935 TTGTCACTCA
*
8863945 CTTTAAATGTTTTATAATCTTATATGATATTAAATCAAAAAATTTTCGTTTTAGGTTAAAATCAA
1 CTTTAAATGTTTTATAATCTTATATGATATTAAATCAAAAAATTTTCATTTTAGGTTAAAATCAA
*
8864010 TCATAATTAGATGTTTGCATCAAGAAACGTGAAGCAAAAGCCATCCATT-ATGAAGAAAAGTCCA
66 TCATAATTAGATGTTTGCATCAAGAAACATGAAGCAAAAGCCATCCATTGA-GAAGAAAAGTCCA
8864074 TTTATAGTCACTCATCCTATCGAAAGCCTTGTTATTTG
130 TTTATAGTCACTCATCCTATCGAAAGCCTTGTTATTTG
* * *
8864112 CTTTAAATGGTTTTATAATCTTATAAATGATTTTCAATCAAAATATTTTTCATTTCT-GGTTAAA
1 CTTTAAAT-GTTTTATAATCTTAT--ATGATATTAAATCAAAA-AATTTTCATTT-TAGGTTAAA
** * * *** * * *
8864176 ATCCCTCATAATTGGATGTTTGGATTGGGAAGCATGAAGCATATGCCATCCATTGAGAAGAAAAG
61 ATCAATCATAATTAGATGTTTGCATCAAGAAACATGAAGCAAAAGCCATCCATTGAGAAGAAAAG
*
8864241 TTCATTTATAGTCA
126 TCCATTTATAGTCA
8864255 TTAATGCCAT
Statistics
Matches: 121, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
167 8 0.07
168 15 0.12
170 15 0.12
171 81 0.67
172 2 0.02
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (167 bp):
CTTTAAATGTTTTATAATCTTATATGATATTAAATCAAAAAATTTTCATTTTAGGTTAAAATCAA
TCATAATTAGATGTTTGCATCAAGAAACATGAAGCAAAAGCCATCCATTGAGAAGAAAAGTCCAT
TTATAGTCACTCATCCTATCGAAAGCCTTGTTATTTG
Found at i:8864705 original size:170 final size:168
Alignment explanation
Indices: 8864263--8866276 Score: 1383
Period size: 170 Copynumber: 11.9 Consensus size: 168
8864253 CATTAATGCC
* * * * * * **
8864263 ATCAAAATGTTTTTCATTGTTGGTTACAATTGATCATAACTAGATGTTTGAATTGGAAAACGTGA
1 ATCAAAATCTTTTTCATT-TTGGTTAAAATCGATCATAATTGGATGTTTGCATCAG-AAACGTGA
* ** * **
8864328 AGCGAA-GGCATCTTTTGACAAGAAAAGTCCACTTATAGTCACTCATAGCT-TTAAAAGCCTTGT
64 AGC-AATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT-GCTATCGAAAGCCTTGT
* * * *
8864391 TACTTGCTTTAAGTGATTTTATAACCTTATAAATGATTTTAA
127 TACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAA
* * * * ** *
8864433 AT-GAAATTTGTTTTCATTTCTGGTTAAAA-CATATCATAATTGGATGATTGCATTGGGAAACGA
1 ATCAAAATCT-TTTTCATTT-TGGTTAAAATC-GATCATAATTGGATGTTTGCA-TCAGAAACGT
* * * * * * * * * *
8864496 GAAGCGAAAGCAATCCGTTGGCAAAAAAAATTCATTTATAGTCACTCATGCTTTCAAAAGCCTAG
62 GAAGC-AATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCTATCGAAAGCCTTG
* * **
8864561 TT-CTCGCTTGAAATGGTTTTCTCCTCTTATAAATGATTTTAA
126 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAA
* * * *
8864603 ATCAAAATATTTTTCATTTTCGGTTCAAATAGATCATAATTAGATGTTTGCATCAGCAAACGTGA
1 ATCAAAATCTTTTTCATTTT-GGTTAAAATCGATCATAATTGGATGTTTGCATCAG-AAACGTGA
* * * * * *
8864668 AGCATATGCCATCCATAGAGAAGAAAAGTCTATTTATACTCACTCATGCCATCGAAACCCTTGTT
64 AGCA-ATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCTATCGAAAGCCTTGTT
* *
8864733 ACTC-ATTTCAAATGGTTTTATAATCTTATAAATGATTTCAA
128 ACTCGCTTT-AAATGGTTTTATAATCTTATAAATGATTTTAA
* * * * * *
8864774 ATCAAAATCCTTTTCA---T--TTAAAATTGCTCATGATTGGATTTTTGCATCGAGAAATGTGAA
1 ATCAAAATCTTTTTCATTTTGGTTAAAATCGATCATAATTGGATGTTTGCATC-AGAAACGTGAA
* * * * * * *
8864834 GTGAATGCTATCCTTTGACAAGATAAGTCCATTTATAGTCACTCATGCCATCAAAACCCTTGTTA
65 G-CAATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCTATCGAAAGCCTTGTTA
** ** *
8864899 CTCGCTTTAAATTATTTTGGAATCTTATAAATAATTTTAA
129 CTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAA
* * * * *
8864939 AT-AGTAATCTTTTTCATTTTTAGTTAAAATCGATCATAATTGGATGTTTTCATCAAGAAACATA
1 ATCA-AAATCTTTTTCA-TTTTGGTTAAAATCGATCATAATTGGATGTTTGCATC-AGAAACGTG
* * * * * * * *
8865003 AAGCGAAAGTCATCCATTAACAAGAAAAGTCTATTTATTGTCACTCATGCTTTTGAAAGCCTTAT
63 AAGC-AATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCTATCGAAAGCCTTGT
* * * *
8865068 TACTC-ATGTTAAAAGATTTTATAATCTTAT--ATGATTTTGA
127 TACTCGCT-TTAAATGGTTTTATAATCTTATAAATGATTTTAA
* *
8865108 ATCAAAATACTTTTT-GTTTTAGTTAAAATCGATCATAATTGGATGTTTGCAAT-AGGAAACGTG
1 ATCAAAAT-CTTTTTCATTTTGGTTAAAATCGATCATAATTGGATGTTTGC-ATCA-GAAACGTG
** * ** *
8865171 AAGCGAATGCTTTCTATTGTGAA-AAAAGGCCCATTTATAGTCACTCATG-TCATCGAAAGCCTT
63 AAGC-AATGCCATCCATTGACAAGAAAA-GTCCATTTATAGTCACTCATGCT-ATCGAAAGCCTT
* * * * *
8865234 ATTAGTCACTTTAAATAGTTTTATAATGTTATAAATGATTTTAA
125 GTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAA
* ** * * * * *
8865278 ATCAAAAGCTTTTCTTTTTTTTTGTTAAAAT-AATCATAATTGGATGTTTACATAAAGAAACATG
1 ATCAAAATC-TTT-TTCATTTTGGTTAAAATCGATCATAATTGGATGTTTGCAT-CAGAAACGTG
** * * ** * * * **
8865342 AAGTGGATGCCATCCACTGATAAGAAAAGTCCATTTACGGTCACTCGTGCCACCGAAAGCCTCAT
63 AAG-CAATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCTATCGAAAGCCTTGT
* *
8865407 TACTCACTTTAAAAGG--TTATAATCTTATAAATGATTTTAA
127 TACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAA
* * * * ** *
8865447 ATCAAAATCTTTTTCATTTTTGCTTAATATCGATCACAATTGGATGTTAGCATTGGGAAACATGA
1 ATCAAAATCTTTTTCA-TTTTGGTTAAAATCGATCATAATTGGATGTTTGCA-TCAGAAACGTGA
* * * **
8865512 AGCAAATGCCATCCATTGACAAGAAATGTCCATTTATAGCCACTCAAGCCCTCGAAAGCCTTGTT
64 AGC-AATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCTATCGAAAGCCTTGTT
* * * *
8865577 AGTCGCTTCAAGA-GGTTTCATAATTTTATAAATGATTTTGAA
128 ACTCGCTTTAA-ATGGTTTTATAATCTTATAAATGATTTT-AA
* * ** ** * * * * *
8865619 TTGAATTTCTTTTTTCATTTCTAATTAAAATAGAACATAATTGGATGTTTGCATTGACAAACATG
1 ATCAAAATC-TTTTTCATTT-TGGTTAAAATCGATCATAATTGGATGTTTGCA-TCAGAAACGTG
* * * **
8865684 AAGGGAAAGCGATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTAT-GAAAGCCTAA
63 AA-GCAATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG-CTATCGAAAGCCTTG
* * * *
8865748 TTACTCGCTTTAAATAGTTTTATAATCTTAGAAGTGA-TTTCA
126 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAA
* *** * ** * * *
8865790 ATGGATTTTTTTTTTCAGTTTTGGTTAAAAT-GATCATAATTCAATTTTTGTATCAGGAAATGTG
1 AT-CAAAATCTTTTTCA-TTTTGGTTAAAATCGATCATAATTGGATGTTTGCATCA-GAAACGTG
* * * * * * * *
8865854 ATGCATAAGCCATCCATTGAGAAAAAAAGTCCATTTATAATCACTCATCCCATCGAATGCCTTGT
63 AAGCA-ATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCTATCGAAAGCCTTGT
* *
8865919 TACTTGCTTTAAATGGTTTTATAATCTTATCAATGATTTTAA
127 TACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAA
* * ** * ** * *
8865961 ATCAAAATTTTTTTCATTTTTTGTTAAAATCCCTCATGATTGGATGTTTGTGTCGAGAAGCATGA
1 ATCAAAATCTTTTTCA-TTTTGGTTAAAATCGATCATAATTGGATGTTTGCATC-AGAAACGTGA
** * * * * * * *
8866026 AGTGGATGCCATCC-TTCGAGAGGAAAAGTCCATTTATTGTGACT-ATTTCCATTG-AAGCCTTG
64 AG-CAATGCCATCCATT-GACAAGAAAAGTCCATTTATAGTCACTCA-TGCTATCGAAAGCCTTG
* * *
8866088 TTAGTCGGTTTAAATAGTTTTATAATCTTATAAATGATTTTAA
126 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAA
* * * * ** *
8866131 ATCAAAATCTTTTTCATTTT-TTTTAAATCGATCATAACTAGATGTTTGCATTGGAAAACATGAA
1 ATCAAAATCTTTTTCATTTTGGTTAAAATCGATCATAATTGGATGTTTGCATCAG-AAACGTGAA
* * * * * ** * * **
8866195 ACGAGTGGCATCCAATGGCAAGAAAAGTATACTTATAATCACTCATGCCT-TTAAAAGCCTTGTT
65 GC-AATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG-CTATCGAAAGCCTTGTT
*
8866259 ACTCG-TTATAAGTGGTTT
128 ACTCGCTT-TAAATGGTTT
8866277 AGGAAATGTG
Statistics
Matches: 1441, Mismatches: 330, Indels: 147
0.75 0.17 0.08
Matches are distributed among these distances:
164 1 0.00
165 128 0.09
166 6 0.00
167 9 0.01
168 180 0.12
169 181 0.13
170 389 0.27
171 385 0.27
172 40 0.03
173 119 0.08
174 3 0.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (168 bp):
ATCAAAATCTTTTTCATTTTGGTTAAAATCGATCATAATTGGATGTTTGCATCAGAAACGTGAAG
CAATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCTATCGAAAGCCTTGTTACT
CGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAA
Found at i:8864781 original size:171 final size:167
Alignment explanation
Indices: 8864263--8866276 Score: 1334
Period size: 171 Copynumber: 11.9 Consensus size: 167
8864253 CATTAATGCC
* * * * * * * ** *
8864263 ATCAAAATGTTTTTCATTGTTGGTTACAATTGATCATAACTAGATGTTTGAATTGGAAAACGTGA
1 ATCAAAATCTTTTTCATT-TTAGTTAAAATCGATCATAATTGGATGTTTGCATCAG-AAACATGA
* ** * * **
8864328 AGCGAA-GGCATCTTTTGACAAGAAAAGTCCACTTATAGTCACTCATAG-CTTTAAAAGCCTTGT
64 AGC-AATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT-GCCATCGAAAGCCTTGT
* * *
8864391 TACTTGC-TTTAAGTGATTTTATAACCTTATAAATGATTTTAA
127 TAC-T-CATTTAAATGGTTTTATAATCTTATAAATGATTTTAA
* * * * * **
8864433 AT-GAAATTTGTTTTCATTTCTGGTTAAAA-CATATCATAATTGGATGATTGCATTGGGAAACGA
1 ATCAAAATCT-TTTTCATTT-TAGTTAAAATC-GATCATAATTGGATGTTTGCA-TCAGAAAC-A
* * * * * * * ** * *
8864496 -GAAGCGAAAGCAATCCGTTGGCAAAAAAAATTCATTTATAGTCACTCATGCTTTCAAAAGCCTA
61 TGAAGC-AATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTT
* * * **
8864560 GTT-CTCGCTTGAAATGGTTTTCTCCTCTTATAAATGATTTTAA
125 GTTACTC-ATTTAAATGGTTTTATAATCTTATAAATGATTTTAA
* * * * * *
8864603 ATCAAAATATTTTTCATTTTCGGTTCAAATAGATCATAATTAGATGTTTGCATCAGCAAACGTGA
1 ATCAAAATCTTTTTCATTTT-AGTTAAAATCGATCATAATTGGATGTTTGCATCAG-AAACATGA
* * * * *
8864668 AGCATATGCCATCCATAGAGAAGAAAAGTCTATTTATACTCACTCATGCCATCGAAACCCTTGTT
64 AGCA-ATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTT
*
8864733 ACTCATTTCAAATGGTTTTATAATCTTATAAATGATTTCAA
128 ACTCATTT-AAATGGTTTTATAATCTTATAAATGATTTTAA
* * * * * **
8864774 ATCAAAATCCTTTTCA---T--TTAAAATTGCTCATGATTGGATTTTTGCATCGAGAAATGTGAA
1 ATCAAAATCTTTTTCATTTTAGTTAAAATCGATCATAATTGGATGTTTGCATC-AGAAACATGAA
* * * * * *
8864834 GTGAATGCTATCCTTTGACAAGATAAGTCCATTTATAGTCACTCATGCCATCAAAACCCTTGTTA
65 G-CAATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTA
* ** ** *
8864899 CTCGCTTTAAATTATTTTGGAATCTTATAAATAATTTTAA
129 CTC-ATTTAAATGGTTTTATAATCTTATAAATGATTTTAA
* * *
8864939 AT-AGTAATCTTTTTCATTTTTAGTTAAAATCGATCATAATTGGATGTTTTCATCAAGAAACATA
1 ATCA-AAATCTTTTTCA-TTTTAGTTAAAATCGATCATAATTGGATGTTTGCATC-AGAAACATG
* * * * * ** * *
8865003 AAGCGAAAGTCATCCATTAACAAGAAAAGTCTATTTATTGTCACTCATGCTTTTGAAAGCCTTAT
63 AAGC-AATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGT
* * *
8865068 TACTCATGTTAAAAGATTTTATAATCTTAT--ATGATTTTGA
127 TACTCAT-TTAAATGGTTTTATAATCTTATAAATGATTTTAA
* *
8865108 ATCAAAATACTTTTT-GTTTTAGTTAAAATCGATCATAATTGGATGTTTGCAAT-AGGAAACGTG
1 ATCAAAAT-CTTTTTCATTTTAGTTAAAATCGATCATAATTGGATGTTTGC-ATCA-GAAACATG
** * ** * * *
8865171 AAGCGAATGCTTTCTATTGTGAA-AAAAGGCCCATTTATAGTCACTCATGTCATCGAAAGCCTTA
63 AAGC-AATGCCATCCATTGACAAGAAAA-GTCCATTTATAGTCACTCATGCCATCGAAAGCCTTG
* * *
8865235 TTAGTCACTTTAAATAGTTTTATAATGTTATAAATGATTTTAA
126 TTACTCA-TTTAAATGGTTTTATAATCTTATAAATGATTTTAA
* ** * * * *
8865278 ATCAAAAGCTTTTCTTTTTTTTTGTTAAAAT-AATCATAATTGGATGTTTACATAAAGAAACATG
1 ATCAAAATC-TTT-TTCATTTTAGTTAAAATCGATCATAATTGGATGTTTGCAT-CAGAAACATG
** * * ** * * **
8865342 AAGTGGATGCCATCCACTGATAAGAAAAGTCCATTTACGGTCACTCGTGCCACCGAAAGCCTCAT
63 AAG-CAATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGT
*
8865407 TACTCACTTTAAAAGG--TTATAATCTTATAAATGATTTTAA
127 TACTCA-TTTAAATGGTTTTATAATCTTATAAATGATTTTAA
* * * * **
8865447 ATCAAAATCTTTTTCATTTTTGCTTAATATCGATCACAATTGGATGTTAGCATTGGGAAACATGA
1 ATCAAAATCTTTTTCATTTTAG-TTAAAATCGATCATAATTGGATGTTTGCA-TCAGAAACATGA
* * * *
8865512 AGCAAATGCCATCCATTGACAAGAAATGTCCATTTATAGCCACTCAAGCCCTCGAAAGCCTTGTT
64 AGC-AATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTT
* * * * *
8865577 AGTCGCTTCAAGA-GGTTTCATAATTTTATAAATGATTTTGAA
128 ACTC-ATTTAA-ATGGTTTTATAATCTTATAAATGATTTT-AA
* * ** * * * * *
8865619 TTGAATTTCTTTTTTCATTTCTAATTAAAATAGAACATAATTGGATGTTTGCATTGACAAACATG
1 ATCAAAATC-TTTTTCATTT-TAGTTAAAATCGATCATAATTGGATGTTTGCA-TCAGAAACATG
* * * **
8865684 AAGGGAAAGCGATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTAT-GAAAGCCTAA
63 AA-GCAATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC-ATCGAAAGCCTTG
* * * * *
8865748 TTACTCGCTTTAAATAGTTTTATAATCTTAGAAGTGA-TTTCA
126 TTACTC-ATTTAAATGGTTTTATAATCTTATAAATGATTTTAA
* *** * * ** * * **
8865790 ATGGATTTTTTTTTTCAGTTTTGGTTAAAAT-GATCATAATTCAATTTTTGTATCAGGAAATGTG
1 AT-CAAAATCTTTTTCA-TTTTAGTTAAAATCGATCATAATTGGATGTTTGCATCA-GAAACATG
* * * * * * *
8865854 ATGCATAAGCCATCCATTGAGAAAAAAAGTCCATTTATAATCACTCATCCCATCGAATGCCTTGT
63 AAGCA-ATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGT
*
8865919 TACTTGC-TTTAAATGGTTTTATAATCTTATCAATGATTTTAA
127 TAC-T-CATTTAAATGGTTTTATAATCTTATAAATGATTTTAA
* * ** * ** *
8865961 ATCAAAATTTTTTTCATTTTTTGTTAAAATCCCTCATGATTGGATGTTTGTGTCGAGAAGCATGA
1 ATCAAAATCTTTTTCA-TTTTAGTTAAAATCGATCATAATTGGATGTTTGCATC-AGAAACATGA
** * * * * * *
8866026 AGTGGATGCCATCC-TTCGAGAGGAAAAGTCCATTTATTGTGACT-ATTTCCATTG-AAGCCTTG
64 AG-CAATGCCATCCATT-GACAAGAAAAGTCCATTTATAGTCACTCA-TGCCATCGAAAGCCTTG
* * *
8866088 TTAGTCGGTTTAAATAGTTTTATAATCTTATAAATGATTTTAA
126 TTACTC-ATTTAAATGGTTTTATAATCTTATAAATGATTTTAA
* * * * **
8866131 ATCAAAATCTTTTTCATTTT-TTTTAAATCGATCATAACTAGATGTTTGCATTGGAAAACATGAA
1 ATCAAAATCTTTTTCATTTTAGTTAAAATCGATCATAATTGGATGTTTGCATCAG-AAACATGAA
* * * * * ** * * * **
8866195 ACGAGTGGCATCCAATGGCAAGAAAAGTATACTTATAATCACTCATGCCTTTAAAAGCCTTGTTA
65 GC-AATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTA
* *
8866260 CTCGTTATAAGTGGTTT
129 CTCATT-TAAATGGTTT
8866277 AGGAAATGTG
Statistics
Matches: 1441, Mismatches: 324, Indels: 159
0.75 0.17 0.08
Matches are distributed among these distances:
164 1 0.00
165 128 0.09
166 6 0.00
167 14 0.01
168 182 0.13
169 179 0.12
170 379 0.26
171 388 0.27
172 38 0.03
173 123 0.09
174 3 0.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (167 bp):
ATCAAAATCTTTTTCATTTTAGTTAAAATCGATCATAATTGGATGTTTGCATCAGAAACATGAAG
CAATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTACT
CATTTAAATGGTTTTATAATCTTATAAATGATTTTAA
Found at i:8865316 original size:339 final size:336
Alignment explanation
Indices: 8864345--8866263 Score: 1348
Period size: 339 Copynumber: 5.6 Consensus size: 336
8864335 GCATCTTTTG
* * ** * **
8864345 ACAAGAAAAGTCCACTTATAGTCACTCATAG-CTTTAAAAGCCTTGTTACTTGC-TTTAAGTGAT
1 ACAAGAAAAGTCCATTTATAGTCACTCAT-GCCATCGAAAGCCTTATTAC-T-CATTTAAAAG-T
* * * * * *
8864408 TTTATAACCTTATAAATGATTTTAAAT-GAAATTTGTTTTCATTTCTGGTTAAAA-CATATCATA
62 TTTATAATCTTAT-AATGATTTTAAATCAAAATCT-TTTTCGTTT-TAGTTAAAATC-GATCATA
* * * * * * * * *
8864471 ATTGGATGATTGCATTGGGAAACGAGAAGCGAAAGCAATCCGTTG-GCAAAAAAAATTCATTTAT
123 ATTGGATGTTTGCAATAGGAAACGTGAAGCGAATGCCATCCATTGAG--AAAAAAGTCCATTTAT
** * * * * * **
8864535 AGTCACTCATGCTTTCAAAAGCCTAGTT-CTCGCTTGAAATGGTTTTCTCCTCTTATAAATGATT
186 AGTCACTCATGCCATCGAAAGCCTTGTTACTCGCTTTAAATAGTTTTATAATCTTATAAATGATT
* * ** * *
8864599 TTAAATCAAAATATTTTTCATTTTCGGTTCAAATAGATCATAATTAGATGTTTGCATC-AGCAAA
251 TTAAATCAAAATCTTTTTTATTTTTAGTTAAAATA-ATCATAATTGGATGTTTGCATCAAG-AAA
* *
8864663 CGTGAAGC-ATATGCCATCCA-TA
314 CATGAAGCGA-AAGCCATCCATTA
* * * * * *
8864685 GAGAAGAAAAGTCTATTTATACTCACTCATGCCATCGAAACCCTTGTTACTCATTTCAAATGGTT
1 -ACAAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTATTACTCATTT-AAA-AGTT
* * * * * *
8864750 TTATAATCTTATAAATGATTTCAAATCAAAATCCTTTTC-----ATTTAAAATTGCTCATGATTG
63 TTATAATCTTAT-AATGATTTTAAATCAAAATCTTTTTCGTTTTAGTTAAAATCGATCATAATTG
* * * * * * * *
8864810 GATTTTTGC-ATCGAGAAATGTGAAGTGAATGCTATCCTTTGACAAGATAAGTCCATTTATAGTC
127 GATGTTTGCAATAG-GAAACGTGAAGCGAATGCCATCCATTGAGAA-AAAAGTCCATTTATAGTC
* * ** *
8864874 ACTCATGCCATCAAAACCCTTGTTACTCGCTTTAAATTA-TTTTGGAATCTTATAAATAATTTTA
190 ACTCATGCCATCGAAAGCCTTGTTACTCGCTTTAAA-TAGTTTTATAATCTTATAAATGATTTTA
* * * *
8864938 AAT-AGTAATCTTTTTCATTTTTAGTTAAAATCGATCATAATTGGATGTTTTCATCAAGAAACAT
254 AATCA-AAATCTTTTTTATTTTTAGTTAAAAT-AATCATAATTGGATGTTTGCATCAAGAAACAT
* *
8865002 AAAGCGAAAGTCATCCATTA
317 GAAGCGAAAGCCATCCATTA
* * ** *
8865022 ACAAGAAAAGTCTATTTATTGTCACTCATGCTTTTGAAAGCCTTATTACTCATGTTAAAAGATTT
1 ACAAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTATTACTCAT-TTAAAAG-TTT
*
8865087 TATAATCTTAT-ATGATTTTGAATCAAAATACTTTTT-GTTTTAGTTAAAATCGATCATAATTGG
64 TATAATCTTATAATGATTTTAAATCAAAAT-CTTTTTCGTTTTAGTTAAAATCGATCATAATTGG
** * * *
8865150 ATGTTTGCAATAGGAAACGTGAAGCGAATGCTTTCTATTGTGAAAAAAGGCCCATTTATAGTCAC
128 ATGTTTGCAATAGGAAACGTGAAGCGAATGCCATCCATTGAGAAAAAA-GTCCATTTATAGTCAC
* * * * *
8865215 TCATGTCATCGAAAGCCTTATTAGTCACTTTAAATAGTTTTATAATGTTATAAATGATTTTAAAT
192 TCATGCCATCGAAAGCCTTGTTACTCGCTTTAAATAGTTTTATAATCTTATAAATGATTTTAAAT
* * * * *
8865280 CAAAAGCTTTTCTTTTTTTTTGTTAAAATAATCATAATTGGATGTTTACATAAAGAAACATGAAG
257 CAAAATCTTTT-TTATTTTTAGTTAAAATAATCATAATTGGATGTTTGCATCAAGAAACATGAAG
* * * * *
8865345 TGGATGCCATCCACTG
321 CGAAAGCCATCCATTA
* ** * * * *
8865361 ATAAGAAAAGTCCATTTACGGTCACTCGTGCCACCGAAAGCCTCATTACTCACTTTAAAAG-GTT
1 ACAAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTATTACTCA-TTTAAAAGTTTT
* * * *
8865425 ATAATCTTATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGCTTAATATCGATCACAATTGG
65 ATAATCTTAT-AATGATTTTAAATCAAAATCTTTTTCGTTTTAG-TTAAAATCGATCATAATTGG
* * * * * * * *
8865490 ATGTTAGCATTGGGAAACATGAAGCAAATGCCATCCATTGACAAGAAATGTCCATTTATAGCCAC
128 ATGTTTGCAATAGGAAACGTGAAGCGAATGCCATCCATTGAGAA-AAAAGTCCATTTATAGTCAC
* * * * * * *
8865555 TCAAGCCCTCGAAAGCCTTGTTAGTCGCTTCAAGA-GGTTTCATAATTTTATAAATGATTTTGAA
192 TCATGCCATCGAAAGCCTTGTTACTCGCTTTAA-ATAGTTTTATAATCTTATAAATGATTTT-AA
* * ** * * * ** *
8865619 TTGAATTTCTTTTTTCATTTCTAATTAAAATAGAACATAATTGGATGTTTGCATTGACAAACATG
255 ATCAAAATCTTTTTT-ATTTTTAGTTAAAATA-ATCATAATTGGATGTTTGCATCAAGAAACATG
* * *
8865684 AAGGGAAAGCGATCCATTG
318 AAGCGAAAGCCATCCATTA
* *
8865703 ACAAGAAAAGTCCATTTATAGTCACTCATGCCTAT-GAAAGCCTAATTACTCGCTTTAAATAGTT
1 ACAAGAAAAGTCCATTTATAGTCACTCATGCC-ATCGAAAGCCTTATTACTC-ATTTAAA-AGTT
* * * *** * *
8865767 TTATAATCTTAGAAGTGA-TTTCAATGGATTTTTTTTTTCAGTTTTGGTTAAAAT-GATCATAAT
63 TTATAATCTTATAA-TGATTTTAAAT-CAAAATCTTTTTC-GTTTTAGTTAAAATCGATCATAAT
** * * * * *
8865830 TCAATTTTTG-TATCAGGAAATGTGATGC-ATAAGCCATCCATTGAGAAAAAAAGTCCATTTATA
125 TGGATGTTTGCAAT-AGGAAACGTGAAGCGA-ATGCCATCCATTGAG-AAAAAAGTCCATTTATA
* * * * * *
8865893 ATCACTCATCCCATCGAATGCCTTGTTACTTGCTTTAAATGGTTTTATAATCTTATCAATGATTT
187 GTCACTCATGCCATCGAAAGCCTTGTTACTCGCTTTAAATAGTTTTATAATCTTATAAATGATTT
* ** * ** * *
8865958 TAAATCAAAAT-TTTTTTCATTTTTTGTTAAAATCCCTCATGATTGGATGTTTGTGTCGAGAAGC
252 TAAATCAAAATCTTTTTT-ATTTTTAGTTAAAAT-AATCATAATTGGATGTTTGCATCAAGAAAC
* * * *
8866022 ATGAAGTGGATGCCATCC-TTCG
315 ATGAAGCGAAAGCCATCCATT-A
* * * * * * * * *
8866044 AGAGGAAAAGTCCATTTATTGTGACT-ATTTCCATTG-AAGCCTTGTTAGTCGGTTTAAATAGTT
1 ACAAGAAAAGTCCATTTATAGTCACTCA-TGCCATCGAAAGCCTTATTACTC-ATTTAAA-AGTT
* * * * *
8866107 TTATAATCTTATAAATGATTTTAAATCAAAATCTTTTTCATTTT-TTTTAAATCGATCATAACTA
63 TTATAATCTTAT-AATGATTTTAAATCAAAATCTTTTTCGTTTTAGTTAAAATCGATCATAATTG
* * * * * * ** * *
8866171 GATGTTTGC-ATTGGAAAACATGAAACGAGTGGCATCCAATG-GCAAGAAAAGTATACTTATAAT
127 GATGTTTGCAATAGG-AAACGTGAAGCGAATGCCATCCATTGAG-AA-AAAAGTCCATTTATAGT
* **
8866234 CACTCATGCCTTTAAAAGCCTTGTTACTCG
189 CACTCATGCCATCGAAAGCCTTGTTACTCG
8866264 TTATAAGTGG
Statistics
Matches: 1244, Mismatches: 273, Indels: 124
0.76 0.17 0.08
Matches are distributed among these distances:
334 20 0.02
335 84 0.07
336 153 0.12
337 20 0.02
338 22 0.02
339 312 0.25
340 193 0.16
341 187 0.15
342 104 0.08
343 114 0.09
344 30 0.02
345 5 0.00
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (336 bp):
ACAAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTATTACTCATTTAAAAGTTTTA
TAATCTTATAATGATTTTAAATCAAAATCTTTTTCGTTTTAGTTAAAATCGATCATAATTGGATG
TTTGCAATAGGAAACGTGAAGCGAATGCCATCCATTGAGAAAAAAGTCCATTTATAGTCACTCAT
GCCATCGAAAGCCTTGTTACTCGCTTTAAATAGTTTTATAATCTTATAAATGATTTTAAATCAAA
ATCTTTTTTATTTTTAGTTAAAATAATCATAATTGGATGTTTGCATCAAGAAACATGAAGCGAAA
GCCATCCATTA
Found at i:8866643 original size:171 final size:171
Alignment explanation
Indices: 8866279--8869428 Score: 2194
Period size: 171 Copynumber: 18.6 Consensus size: 171
8866269 AGTGGTTTAG
* * * ** * *
8866279 GAAATGTGAAGCGGAA-GCCATCCATCGACAAGAAAAGTCCATTTGCAATCACTCATGCCTTTGA
1 GAAACGTGAAGC-GAATGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCATTGA
* * * * ** * * **
8866343 AAG-CTTGTTTAGTTGTTTTAAATGGTTATATAATCTTATAAACAAATTTAATATAAAAAGATTT
65 AAGCCTTG-TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAA-ATCAAAATTTTT
* * ** * *
8866407 TTCGTTTTTGGTTAAAA-CAGATTGTAATTGGATGTTTGCATTAA
128 TTCATTTTTGATTAAAATCA-ATCATAATTGGATGTTTGCATCAT
* * ** * *
8866451 GAAACGTGAAGCGAGTGCCATCTATTGGGAAGAAAAGTCCTTTTATAGTTACTCATGCCATTGAA
1 GAAACGTGAAGCGAATGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCATTGAA
* * * * * * *
8866516 AACCTTATTACTTGCTTCAAATGATTTTATAATCTTATAAATGATTTTAAATCAAAGTTTTTTTT
66 AGCCTTGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTTTC
* * *
8866581 GTTTTTGATTAAAATCACTCATAATTGGATGTTTGTATCAT
131 ATTTTTGATTAAAATCAATCATAATTGGATGTTTGCATCAT
* ** *
8866622 GAAACGTGAAGC-AGATGCCATCCATTG-TAAAAAGAAGTCCATTTATAACCACTCATGCCATCG
1 GAAACGTGAAGCGA-ATGCCATCCATTGATAAGAA-AAGTCCATTTATAGTCACTCATGCCATTG
* * * * ** *
8866685 -AAGCCTTGTTACTCACTTTAAATAGTTTCATAATCTTATAAATAATTTTAAATTTAAATATTTT
64 AAAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTT
** * **
8866749 TCATTACTGGTTAAAATTGATCATAATTGGATGTTTGCAT--T
129 TCATTTTTGATTAAAATCAATCATAATTGGATGTTTGCATCAT
* * *
8866790 GGAAAATGTGAAGCGAATGCCATCTATTGATAAGAAAAGTCCATTAATAGTCA--C---CCA-T-
1 -G-AAACGTGAAGCGAATGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCATTG
* *** * *
8866848 --A-CTTTGTTACTTATTTTAAA-GGTTTTAATAATCTTCTAAATGATTTTAAATCAAAATTTTC
64 AAAGCCTTGTTACTCGCTTTAAATGGTTTT-ATAATCTTATAAATGATTTTAAATCAAAATTTTT
* *
8866909 TTCATTTCT-AGTTAAAAT-AGATCATAATTGGATGTTTGCATCAA
128 TTCATTTTTGA-TTAAAATCA-ATCATAATTGGATGTTTGCATCAT
* * * * ** *
8866953 GAAACATGAAGCGAAAGCCATCCATTGACAAGAAAATTTTATTTATAGTCACAT-ATGCC-TTTA
1 GAAACGTGAAGCGAATGCCATCCATTGATAAGAAAAGTCCATTTATAGTCAC-TCATGCCATTGA
* * * ** * *
8867016 AGAGCCTTGTTACTCGCATCAAATGGGTTTCGAATCTTATCAATGATTTTAAATCAAAATATTTT
65 A-AGCCTTGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTT
* * *
8867081 TCATTTTAG-TTAAAATCGATCATAATTGGATGTTTGCATTGA-
129 TCATTTTTGATTAAAATCAATCATAATTGGATGTTTGCA-TCAT
* * * * ** * **
8867123 GAAACGTGAAGTGGATGCCATCCATTGAGAAGAAAAGTCCATTTATTGTTGCTAATGCCATCAAA
1 GAAACGTGAAGCGAATGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCATTGAA
* * * * * ***
8867188 AACCTTGTTACTTGCTTT-AA-------AT-ATCTTAAAAACGACTTTT-AATAAAAAAAATTTT
66 AGCCTTGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGA-TTTTAAATCAAAATTTTTTT
** ** * * *
8867243 GGTTTTCAATTAACAA-CAACCATAATAGGCA--TTTGCAT-TT
130 CATTTTTGATTAA-AATCAATCATAATTGG-ATGTTTGCATCAT
** * * * * * *
8867283 GGAAGTGTGAAGCGGATGCCATCCATTGAAAAGAAAAGTCTATTTATATTCACTCATGCCGTCGA
1 -GAAACGTGAAGCGAATGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCATTGA
* * * * *
8867348 AAGCCTTGTTACTCGCTTTAACTAGTTTAATAATCTTATAAATGATTTTAAAACAAAATATTTTT
65 AAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTTT
* * ** * *
8867413 CATTTCTGGTTAAAAAAAATAATAATTGGATGTTTGCATTGA-
130 CATTTTTGATTAAAATCAATCATAATTGGATGTTTGCA-TCAT
* * * * * * * * *
8867455 GAAACATAAAGCAAAAGCCATCCATTGATAATAAAAATCCATTTATAGTTTA-TCATACCTTTGA
1 GAAACGTGAAGCGAATGCCATCCATTGATAAGAAAAGTCCATTTATAG-TCACTCATGCCATTGA
* * * * * **
8867519 AAGCCTTATTGCTCGCTTCAAATGGTTTTATAATCTTAAAAATGATTTTAAGA-CAAAATCTTAG
65 AAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAA-ATCAAAATTTTTT
* * **
8867583 TCATTTTTGGTTAAAAACCCTCATAATTGGATGTTTGCATCGA-
129 TCATTTTTGATTAAAATCAATCATAATTGGATGTTTGCATC-AT
* * * * **
8867626 GAAACGTGAAGCAAATGCCATCCATTGGTAAGAAAAGTCCATTTATTGTCACTCATCCCATCAAA
1 GAAACGTGAAGCGAATGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCATTGAA
* * * * * * * * *
8867691 AGCCTTGTTACTCACTTTAAATGGGTTTATATTGTTAGAAAT-TTTTTAAGTCAAAATCTTTTTA
66 AGCCTTGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTTTC
* ** * ***
8867755 AGTTTTGATTAAAATTGAGCATAATTGGATGTTTGCATTGG
131 ATTTTTGATTAAAATCAATCATAATTGGATGTTTGCATCAT
* * * * * *
8867796 GAAACATGAAGCGAATGCCATCTATTGACAAGAATAGTCCATTTATTA-TCATTCATGCCTTTGA
1 GAAACGTGAAGCGAATGCCATCCATTGATAAGAAAAGTCCATTTA-TAGTCACTCATGCCATTGA
* * * * * * *
8867860 AAGCCTTGTTACTCACTTTAATTGGTTTTATAATCTTACAAACGATTTCAAAACAAAATATTTTT
65 AAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTTT
* * * * * *
8867925 CATTTCTGGTTAAAA-CAAATCATAATTGGAAGTTTTCATTAG
130 CATTTTTGATTAAAATC-AATCATAATTGGATGTTTGCATCAT
* * ** * * *
8867967 GAAACATGAAGCGAAAGCTTTCCATTGATAAGAAAAGTCCATTTATTGTAACTTATGCC-TTAGA
1 GAAACGTGAAGCGAATGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCATT-GA
* * ** * * * ** *
8868031 AAGCCTTGTTACTTGCTTTAACTGGTTAAATAATCCTATCAATGATATTAAATTGAAATTCTTTT
65 AAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTTT
* *
8868096 CATTTTTCATTAAAA-CAGATCTTAATTGGATGTTTGCAT--T
130 CATTTTTGATTAAAATCA-ATCATAATTGGATGTTTGCATCAT
* * * *
8868136 GGAAAATGTGAAGCGAAAGCCATCCATTAACAAGAAAAGTCCATTTATAGTCACTCATGCC-TTC
1 -G-AAACGTGAAGCGAATGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCATT-
* * * *
8868200 CAAAGCCTAGTTACTCCCTTTAAAAGGTTTTATAATCTTATAAATGATTTTAAATCAAAATATTT
63 GAAAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAAT-TTT
** *
8868265 TTT-ATTTTTTG-TTATCAT-AGATGATAATTGGATGTTTGCA-C-T
127 TTTCA-TTTTTGATTAAAATCA-ATCATAATTGGATGTTTGCATCAT
* * * * ** * * *
8868307 GAGACACATGAAGTGAATGCCATCCATTGACAAGAGAAGTTTATTTATAGTCACTCATACTATCG
1 GA-A-ACGTGAAGCGAATGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCATTG
* * * * * *
8868372 AAAGCCTTGTTACTCGCTCTAAATGGTTATAGAATCTTATGAATGATTTTAAATC--AGTATTTT
64 AAAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTT
* ** ** *
8868435 T--TTTTTGGTTAAAATTGATCATAATTTAATGTTTTCGC-T-AG
129 TCATTTTTGATTAAAATCAATCATAATTGGATG-TTT-GCATCAT
* ** * * * * *
8868476 GAAACTTGAAGCGGTTGCCATCCATTGAAAAGCAAAGTCCTTTTATAGTCACTCATGCTATCGAA
1 GAAACGTGAAGCGAATGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCATTGAA
* * * * *
8868541 AGCCTTGTTACTCGCTCTAAATGGTTTTATAATCTTATAAACGGTTTTAAATAAAAATATTTTTC
66 AGCCTTGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTTTC
* * * ***
8868606 ATTTTT-AGTTAAAATCAATCTTAATTTGATGTTTACATTGG
131 ATTTTTGA-TTAAAATCAATCATAATTGGATGTTTGCATCAT
* * * * * * * * *
8868647 GAAACGTGAAGGGCATCCCAACCATTAATAGGAAAAGTCCATATATAGTCATTCATG-TA-TGCA
1 GAAACGTGAAGCGAATGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCATTG--
* * * * * * * * **
8868710 AAAGCCTTGTTACTCTCATTAAGTTG-CTTACTAATTTTAGAAATGATTTTAAGTCAATTTTTTT
64 AAAGCCTTGTTACTCGCTTTAAATGGTTTTA-TAATCTTATAAATGATTTTAAATCAA--AATTT
* * * *
8868774 TTTTAATTTTTCATTAAAA-CAGAACATAATTGGATGCTTT-CAT-AGG
126 TTTTCATTTTTGATTAAAATCA-ATCATAATTGGATG-TTTGCATCA-T
* * * ** * * * * *
8868820 GAAACATGGAGCGAAAGGTATCCATTAACAAGAAAAGTTCATTTATAGTCACTCATACC-TTCAA
1 GAAACGTGAAGCGAATGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCATT-GA
* * * * * * *
8868884 AAGCCTTGTTGCGCACTTTAAATGGTTTTCTCATCTTATAAATTATTTTAAATCAAAATATTTTT
65 AAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTTT
* *
8868949 CATTTTTGTTTAAAATCAATCATAATTGGATGTTTGTATC-T
130 CATTTTTGATTAAAATCAATCATAATTGGATGTTTGCATCAT
* * * * *
8868990 GGGAA-GATGAAGC-AGATGCCATCCATTGAGAACAAAAGTCCATTTATAGTCACTCAAGCCATC
1 -GAAACG-TGAAGCGA-ATGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCATT
* * * * *
8869053 AAAACCCTT-TTCAGTCGCTTTAAATGGATATATAATCTTATAAATGATTTTAAATCAAAATTTT
63 GAAAGCCTTGTT-ACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATTTT
* * * *
8869117 TTTTATTTTTAATTAAAATCCATCATAATTGGATGCTTGCAT--T
127 TTTCATTTTTGATTAAAATCAATCATAATTGGATGTTTGCATCAT
* * * ** * * * *
8869160 GAGAACCATGAACCGGATGCCAAACATTAATAAGAAAAGTCCATTTCTAGTCACTTAT-CCCTTC
1 GA-AA-CGTGAAGCGAATGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCATT-
* * ** * * *
8869224 AAAAGCCTTGTTACTTGCTTTAACCGATTTTATAATCTTATAAATGATTTTAAATCTAAATTCTT
63 GAAAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATTTTT
* *
8869289 TTCATTTTTGGTTAAAA-CAGATCATAATTGGATGTTTGCATTGA-
128 TTCATTTTTGATTAAAATCA-ATCATAATTGGATGTTTGCA-TCAT
* * * * *
8869333 GAAACATGAAGCGAAAGCTATCCATTGACAAGAAAAGTTCATTTATAGTCACTCATG-CATTCGA
1 GAAACGTGAAGCGAATGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCATT-GA
* *
8869397 AAGCCTTGTTACTTGCTTTAAATGGTTATATA
65 AAGCCTTGTTACTCGCTTTAAATGGTTTTATA
8869429 TGTCAAGGAT
Statistics
Matches: 2318, Mismatches: 541, Indels: 239
0.75 0.17 0.08
Matches are distributed among these distances:
160 5 0.00
161 222 0.10
162 21 0.01
163 3 0.00
165 3 0.00
166 9 0.00
167 114 0.05
168 11 0.00
169 31 0.01
170 415 0.18
171 1238 0.53
172 118 0.05
173 121 0.05
174 7 0.00
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (171 bp):
GAAACGTGAAGCGAATGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCATTGAA
AGCCTTGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTTTC
ATTTTTGATTAAAATCAATCATAATTGGATGTTTGCATCAT
Found at i:8867697 original size:342 final size:342
Alignment explanation
Indices: 8866295--8869423 Score: 2438
Period size: 342 Copynumber: 9.2 Consensus size: 342
8866285 TGAAGCGGAA
* * ** * * ** * * *
8866295 GCCATCCATCGACAAGAAAAGTCCATTTGCAATCACTCATGCCTTTGAAAG-CTTGTTTAGTTGT
1 GCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCATCAAAAGCCTTG-TTACTCGC
** * * * *
8866359 TTTAAATGG-TTATATAATCTTATAAACAAATTTAATATAAAAAGATTTTTCGTTTTTGGTTAAA
65 TTTAAATGGTTTA-ATAATCTTATAAATGATTTTAA-ATCAAAATATTTTTCATTTTTGGTTAAA
* ** * * * * **
8866423 ACAGATTGTAATTGGATGTTTGCATTAAGAAACGTGAAGCGAGTGCCATCTATTGGGAAGAAAAG
128 ATAGATCATAATTGGATGTTTGCATTGAGAAACATGAAGCGAATGCCATCCATTGACAAGAAAAG
* * * * * * *
8866488 TCCTTTTATAGTTACTCATGCCATT-GAAAACCTTATTACTTGCTTCAAATGATTTTATAATCTT
193 TCCATTTATAGTCACTCATGCC-TTCGAAAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCTT
* * ** * * * *
8866552 ATAAATGATTTTAAATCAAAGTTTTTTTTGTTTTTGATTAAAATCACTCATAATTGGATGTTTGT
257 ATAAATGATTTTAAATCAAAATATTTTTCATTTTTGGTTAAAAACAATCATAATTGGATGTTTGC
*
8866617 ATC-ATGAAACGTGAAGCAGAT
322 ATCGA-GAAACGTGAAGCAAAT
* ** * *
8866638 GCCATCCATTG-TAAAAAGAAGTCCATTTATAACCACTCATGCCATC-GAAGCCTTGTTACTCAC
1 GCCATCCATTGATAAGAA-AAGTCCATTTATAGTCACTCATGCCATCAAAAGCCTTGTTACTCGC
* * * ** **
8866701 TTTAAATAGTTTCATAATCTTATAAATAATTTTAAATTTAAATATTTTTCATTACTGGTTAAAAT
65 TTTAAATGGTTTAATAATCTTATAAATGATTTTAAATCAAAATATTTTTCATTTTTGGTTAAAAT
* * *
8866766 TGATCATAATTGGATGTTTGCATTG-GAAA-ATGTGAAGCGAATGCCATCTATTGATAAGAAAAG
130 AGATCATAATTGGATGTTTGCATTGAGAAACA--TGAAGCGAATGCCATCCATTGACAAGAAAAG
* * * ***
8866829 TCCA-TTA-A-T-AGTCA--CC--C-ATA-CTTTGTTACTTATTTTAAA-GGTTTTAATAATCTT
193 TCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCTTTAAATGGTTTT-ATAATCTT
* * * *
8866883 CTAAATGATTTTAAATCAAAAT-TTTCTTCATTTCTAGTTAAAATA-GATCATAATTGGATGTTT
257 ATAAATGATTTTAAATCAAAATATTT-TTCATTTTTGGTTAAAA-ACAATCATAATTGGATGTTT
* *
8866946 GCATCAAGAAACATGAAGCGAAA-
320 GCATCGAGAAACGTGAAGC-AAAT
* * ** * * *
8866969 GCCATCCATTGACAAGAAAATTTTATTTATAGTCACAT-ATGCCTTTAAGAGCCTTGTTACTCGC
1 GCCATCCATTGATAAGAAAAGTCCATTTATAGTCAC-TCATGCCATCAAAAGCCTTGTTACTCGC
* * ** * *
8867033 ATCAAATGGGTTT-CGAATCTTATCAATGATTTTAAATCAAAATATTTTTCA-TTTTAGTTAAAA
65 TTTAAAT-GGTTTAATAATCTTATAAATGATTTTAAATCAAAATATTTTTCATTTTTGGTTAAAA
* * * * *
8867096 TCGATCATAATTGGATGTTTGCATTGAGAAACGTGAAGTGGATGCCATCCATTGAGAAGAAAAGT
129 TAGATCATAATTGGATGTTTGCATTGAGAAACATGAAGCGAATGCCATCCATTGACAAGAAAAGT
* ** * * * * * *
8867161 CCATTTATTGTTGCTAATGCCATCAAAAACCTTGTTACTTGCTTT-AA-------AT-ATCTTAA
194 CCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCTTAT
* * * * ** *** * * *
8867217 AAACGACTTTT-AATAAAAAAAATTTTGGTTTTCAATTAACAACAACCATAATAGGCA--TTTGC
259 AAATGA-TTTTAAATCAAAATATTTTTCATTTTTGGTTAAAAACAATCATAATTGG-ATGTTTGC
* ** **
8867279 ATTTG-GAAGTGTGAAGCGGAT
322 A-TCGAGAAACGTGAAGCAAAT
* * * * *
8867300 GCCATCCATTGAAAAGAAAAGTCTATTTATATTCACTCATGCCGTCGAAAGCCTTGTTACTCGCT
1 GCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCATCAAAAGCCTTGTTACTCGCT
* * * * *
8867365 TTAACTAGTTTAATAATCTTATAAATGATTTTAAAACAAAATATTTTTCATTTCTGGTTAAAAAA
66 TTAAATGGTTTAATAATCTTATAAATGATTTTAAATCAAAATATTTTTCATTTTTGGTTAAAATA
* * * * * * * *
8867430 AATAATAATTGGATGTTTGCATTGAGAAACATAAAGCAAAAGCCATCCATTGATAATAAAAATCC
131 GATCATAATTGGATGTTTGCATTGAGAAACATGAAGCGAATGCCATCCATTGACAAGAAAAGTCC
* * * * * * *
8867495 ATTTATAGTTTA-TCATACCTTTGAAAGCCTTATTGCTCGCTTCAAATGGTTTTATAATCTTAAA
196 ATTTATAG-TCACTCATGCCTTCGAAAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCTTATA
* ** **
8867559 AATGATTTTAAGA-CAAAATCTTAGTCATTTTTGGTTAAAAACCCTCATAATTGGATGTTTGCAT
260 AATGATTTTAA-ATCAAAATATTTTTCATTTTTGGTTAAAAACAATCATAATTGGATGTTTGCAT
8867623 CGAGAAACGTGAAGCAAAT
324 CGAGAAACGTGAAGCAAAT
* * * *
8867642 GCCATCCATTGGTAAGAAAAGTCCATTTATTGTCACTCATCCCATCAAAAGCCTTGTTACTCACT
1 GCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCATCAAAAGCCTTGTTACTCGCT
* * * * * * * * *
8867707 TTAAATGGGTTT-ATATTGTTAGAAAT-TTTTTAAGTCAAAATCTTTTTAAGTTTTGATTAAAAT
66 TTAAAT-GGTTTAATAATCTTATAAATGATTTTAAATCAAAATATTTTTCATTTTTGGTTAAAAT
* * * * *
8867770 TGAGCATAATTGGATGTTTGCATTGGGAAACATGAAGCGAATGCCATCTATTGACAAGAATAGTC
130 AGATCATAATTGGATGTTTGCATTGAGAAACATGAAGCGAATGCCATCCATTGACAAGAAAAGTC
* * * * *
8867835 CATTTATTA-TCATTCATGCCTTTGAAAGCCTTGTTACTCACTTTAATTGGTTTTATAATCTTAC
195 CATTTA-TAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCTTAT
* * * * * *
8867899 AAACGATTTCAAAACAAAATATTTTTCATTTCTGGTT-AAAACAAATCATAATTGGAAGTTTTCA
259 AAATGATTTTAAATCAAAATATTTTTCATTTTTGGTTAAAAAC-AATCATAATTGGATGTTTGCA
* *
8867963 T-TAGGAAACATGAAGCGAAA-
323 TCGA-GAAACGTGAAGC-AAAT
** * * * * *
8867983 GCTTTCCATTGATAAGAAAAGTCCATTTATTGTAACTTATGCC-TTAGAAAGCCTTGTTACTTGC
1 GCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCATCA-AAAGCCTTGTTACTCGC
* * * * * ** **
8868047 TTTAACTGGTTAAATAATCCTATCAATGATATTAAATTGAAAT-TCTTTTCATTTTTCATTAAAA
65 TTTAAATGGTTTAATAATCTTATAAATGATTTTAAATCAAAATAT-TTTTCATTTTTGGTTAAAA
* * * *
8868111 CAGATCTTAATTGGATGTTTGCATTG-GAAA-ATGTGAAGCGAAAGCCATCCATTAACAAGAAAA
129 TAGATCATAATTGGATGTTTGCATTGAGAAACA--TGAAGCGAATGCCATCCATTGACAAGAAAA
* * * *
8868174 GTCCATTTATAGTCACTCATGCCTTCCAAAGCCTAGTTACTCCCTTTAAAAGGTTTTATAATCTT
192 GTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCTT
* * * * * *
8868239 ATAAATGATTTTAAATCAAAATATTTTTTATTTTTTGTTATCATA-GATGATAATTGGATGTTTG
257 ATAAATGATTTTAAATCAAAATATTTTTCATTTTTGGTTA-AAAACAATCATAATTGGATGTTTG
* * **
8868303 CA-CTGAGACACATGAAGTGAAT
321 CATC-GAGAAACGTGAAGCAAAT
* * ** * * *
8868325 GCCATCCATTGACAAGAGAAGTTTATTTATAGTCACTCATACTATCGAAAGCCTTGTTACTCGCT
1 GCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCATCAAAAGCCTTGTTACTCGCT
* * * *
8868390 CTAAATGG-TTATAGAATCTTATGAATGATTTTAAATC--AGTATTTTT--TTTTTGGTTAAAAT
66 TTAAATGGTTTA-ATAATCTTATAAATGATTTTAAATCAAAATATTTTTCATTTTTGGTTAAAAT
* ** * * ** * *
8868450 TGATCATAATTTAATGTTTTCGC-TAG-GAAACTTGAAGCGGTTGCCATCCATTGAAAAGCAAAG
130 AGATCATAATTGGATG-TTT-GCATTGAGAAACATGAAGCGAATGCCATCCATTGACAAGAAAAG
* *
8868513 TCCTTTTATAGTCACTCATG-CTATCGAAAGCCTTGTTACTCGCTCTAAATGGTTTTATAATCTT
193 TCCATTTATAGTCACTCATGCCT-TCGAAAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCTT
* * * * * * * *
8868577 ATAAACGGTTTTAAATAAAAATATTTTTCATTTTTAGTTAAAATCAATCTTAATTTGATGTTTAC
257 ATAAATGATTTTAAATCAAAATATTTTTCATTTTTGGTTAAAAACAATCATAATTGGATGTTTGC
* * ***
8868642 ATTGGGAAACGTGAAGGGCAT
322 ATCGAGAAACGTGAAGCAAAT
* * * * * * * *
8868663 CCCAACCATTAATAGGAAAAGTCCATATATAGTCATTCATG-TATGCAAAAGCCTTGTTACTCTC
1 GCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCAT-CAAAAGCCTTGTTACTCGC
* * * * * * * * ** * * **
8868727 ATTAAGTTGCTTACTAATTTTAGAAATGATTTTAAGTCAATTTTTTTTTTTAATTTTTCATTAAA
65 TTTAAATGGTTTAATAATCTTATAAATGATTTTAAATCAA--AATATTTTTCATTTTTGGTTAAA
* * * * * * ** *
8868792 ACAGAACATAATTGGATGCTTT-CATAGGGAAACATGGAGCGAAAGGTATCCATTAACAAGAAAA
128 ATAGATCATAATTGGATG-TTTGCATTGAGAAACATGAAGCGAATGCCATCCATTGACAAGAAAA
* * * * * * * *
8868856 GTTCATTTATAGTCACTCATACCTTCAAAAGCCTTGTTGCGCACTTTAAATGGTTTTCTCATCTT
192 GTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCTT
* * * *
8868921 ATAAATTATTTTAAATCAAAATATTTTTCATTTTTGTTTAAAATCAATCATAATTGGATGTTTGT
257 ATAAATGATTTTAAATCAAAATATTTTTCATTTTTGGTTAAAAACAATCATAATTGGATGTTTGC
* *
8868986 ATCTG-GGAA-GATGAAGCAGAT
322 ATC-GAGAAACG-TGAAGCAAAT
* * * * *
8869007 GCCATCCATTGAGAACAAAAGTCCATTTATAGTCACTCAAGCCATCAAAACCCTT-TTCAGTCGC
1 GCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCATCAAAAGCCTTGTT-ACTCGC
* * * **
8869071 TTTAAATGG-ATATATAATCTTATAAATGATTTTAAATCAAAATTTTTTTTATTTTTAATTAAAA
65 TTTAAATGGTTTA-ATAATCTTATAAATGATTTTAAATCAAAATATTTTTCATTTTTGGTTAAAA
** * * * * ** * *
8869135 TCCATCATAATTGGATGCTTGCATTGAGAACCATGAACCGGATGCCAAACATTAATAAGAAAAGT
129 TAGATCATAATTGGATGTTTGCATTGAGAAACATGAAGCGAATGCCATCCATTGACAAGAAAAGT
* * * * * ** *
8869200 CCATTTCTAGTCACTTATCCCTTCAAAAGCCTTGTTACTTGCTTTAACCGATTTTATAATCTTAT
194 CCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCTTAT
*
8869265 AAATGATTTTAAATCTAAAT-TCTTTTCATTTTTGGTT-AAAACAGATCATAATTGGATGTTTGC
259 AAATGATTTTAAATCAAAATAT-TTTTCATTTTTGGTTAAAAACA-ATCATAATTGGATGTTTGC
* *
8869328 ATTGAGAAACATGAAGCGAAA-
322 ATCGAGAAACGTGAAGC-AAAT
* * * * *
8869349 GCTATCCATTGACAAGAAAAGTTCATTTATAGTCACTCATG-CATTCGAAAGCCTTGTTACTTGC
1 GCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCA-TCAAAAGCCTTGTTACTCGC
8869413 TTTAAATGGTT
65 TTTAAATGGTT
8869424 ATATATGTCA
Statistics
Matches: 2185, Mismatches: 497, Indels: 208
0.76 0.17 0.07
Matches are distributed among these distances:
330 14 0.01
331 288 0.13
332 198 0.09
333 17 0.01
334 1 0.00
335 4 0.00
337 12 0.01
338 239 0.11
339 14 0.01
340 42 0.02
341 406 0.19
342 641 0.29
343 57 0.03
344 247 0.11
345 5 0.00
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (342 bp):
GCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCATCAAAAGCCTTGTTACTCGCT
TTAAATGGTTTAATAATCTTATAAATGATTTTAAATCAAAATATTTTTCATTTTTGGTTAAAATA
GATCATAATTGGATGTTTGCATTGAGAAACATGAAGCGAATGCCATCCATTGACAAGAAAAGTCC
ATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCTTATAA
ATGATTTTAAATCAAAATATTTTTCATTTTTGGTTAAAAACAATCATAATTGGATGTTTGCATCG
AGAAACGTGAAGCAAAT
Found at i:8869076 original size:853 final size:842
Alignment explanation
Indices: 8866418--8869428 Score: 2228
Period size: 853 Copynumber: 3.5 Consensus size: 842
8866408 TCGTTTTTGG
** * * * **
8866418 TTAAAACAGATTGTAATTGGATGTTTGCATTAAGAAACGTGAAGCGAGTGCCATCTATTGGGAAG
1 TTAAAACAGATCATAATTGGATGTTTGCATT-GGAAAAGTGAAGCGA-TGCCATCCATTGAAAAG
* * * * * * *
8866483 AAAAGTCCTTTTATAGTTACTCATGCCATTGAAAA-CCTTATTACTTGCTTCAAATGATTTTATA
64 AAAAGTCCATTTATAGTCACTCATGCCA-TCAAAAGCCTT-TTACTCGCTTTAAAAGGTTTTATA
* * * * * *
8866547 ATCTTATAAATGATTTTAAATCAAAGTTTTTTTTGTTTTT-GATTAAAATCACTCATAATTGGAT
127 ATCTTATAAATGATTTTAAATCAAAATATTTTTTATTTTTAG-TTAAAATAAATAATAATTGGAT
* * * **
8866611 GTTTGTATCATGA-AACGTGAAGC-AGATGCCATCCATTG-TAAAAAGAAGTCCATTTATAACCA
191 GTTTGCAT--TGAGAACATGAAGCGA-ATGCCATCCATTGATAAGAA-AAGTCCATTTATAGTCA
* * * * * *
8866673 CTCATGCCATCG-AAGCCTTGTTACTCACTTTAAATAGTTTCATAATCTTATAAATAATTTTAAA
252 CTCAT-ACTTCGAAAGCCTTGTTACTCGC-TTAAATGGTTTTATAATCTTATAAATGATTTTAAA
* * * ** *
8866737 TTTAAATATTTTTCATTACTGGTTAAAATTGATCATAATTGGATGTTTGCATTG-GAAA-ATGTG
315 -TCAAATCTTTTT--TT-TTGGTTAAAAAAGATCATAATTGGATGTTTGCATAGAGAAACA--TG
* * * *
8866800 AAGCGAATGCCATCTATTGATAAGAAAAGTCCATTAATAGTCAC-C---CAT----A-CTTTGTT
374 AAGCGAATGCCATCCATTGAAAAGAAAAGTCCATTTATAGTCACTCATGCATCGAAAGCCTTGTT
*** ** * * *
8866856 ACTTATTTTAAA-GGTTTTAATAATCTTCTAAATGATTTTAAATCAAAAT-TTTCTTCA-TTTCT
439 ACTCGCTTTAAATGGTTTT-ATAATCTTAGAAA-GGTTTTAAATAAAAATATTT-TTAAGTTT-T
* * *** ** * *
8866918 -AGTTAAAAT-AGATCATAATTGGATGTTTGCATCAAGAAACATGAAGCGAAAGCCATCCATTGA
500 GA-TTAAAATCA-AGCATAATTGGATGTTTACATTGGGAAACATGAAGCGAATCCCAACCATTAA
* ** * * * * * *
8866981 CAAGAAAATTTTATTTA-TAGTCACAT-ATGCCT-TTAAGAGCCTTGTTACTCGCATCAAATGGG
563 CAAGAAAAGTCCATATATTA-TCA-TTCATG-CTATGAA-AGCCTTGTTACTCACAT-TAATTGG
** * * * * *
8867043 T-TTCGAATCTTATC-AATGATTTTAAATCAAAATATTTTTCATTT-T-AGTTAAAATC-GATCA
623 TCTTATAATCTTA-CAAACGATTTCAAAACAAAATATTTTTAATTTCTCA-TTAAAA-CAAATCA
* * * * * * * *
8867103 TAATTGGATG-TTTGCATT-GAGAAACGTGAAGTGGATGCCATCCATTGAGAAGAAAAGTCCATT
685 TAATTGGAAGCTTT-CATTAG-GAAACATGAAGCGAAAGCTATCCATTAACAAGAAAAGTCCATT
* ** * * * * ** * * *
8867166 TATTGTTGCTAATGCCATCA-AAAACCTTGTT----AC-TT-GCT--TTAAAT-ATCTTAAAAAC
748 TATAGTAACTCATACC-TTAGAAAGCCTTGTTACGCACTTTAAATGGTTAAATAATCCTATAAAT
* * *** **
8867221 GACT-TTTAATAAAAAAAATTTT-GGTTTTCAA
812 GA-TATTAAATCAAAATTCTTTTCATTTTTC-A
* * **
8867252 TTAACAACA-ACCATAATAGGCA--TTTGCATTTGGAAGTGTGAAGCGGATGCCATCCATTGAAA
1 TTAA-AACAGATCATAATTGG-ATGTTTGCA-TTGGAAAAGTGAAGC-GATGCCATCCATTGAAA
* * * * * *
8867314 AGAAAAGTCTATTTATATTCACTCATGCCGTCGAAAGCCTTGTTACTCGCTTTAACTA-GTTTAA
62 AGAAAAGTCCATTTATAGTCACTCATGCCATCAAAAGCCTT-TTACTCGCTTTAA-AAGGTTTTA
* * * * *
8867378 TAATCTTATAAATGATTTTAAAACAAAATATTTTTCATTTCTGGTTAAAAAAAATAATAATTGGA
125 TAATCTTATAAATGATTTTAAATCAAAATATTTTTTATTTTTAGTTAAAATAAATAATAATTGGA
* * * * * *
8867443 TGTTTGCATTGAGAAACATAAAGCAAAAGCCATCCATTGATAATAAAAATCCATTTATAGTTTA-
190 TGTTTGCATTGAG-AACATGAAGCGAATGCCATCCATTGATAAGAAAAGTCCATTTATAG-TCAC
* * * *
8867507 TCATACCTTTGAAAGCCTTATTGCTCGCTTCAAATGGTTTTATAATCTTAAAAATGATTTTAAGA
253 TCATA-CTTCGAAAGCCTTGTTACTCGCTT-AAATGGTTTTATAATCTTATAAATGATTTTAA-A
* *** * *
8867572 -CAAAATCTTAGTCATTTTTGGTTAAAAACCCTCATAATTGGATGTTTGCATCGAGAAACGTGAA
315 TC-AAATCTT--T-TTTTTTGGTTAAAAAAGATCATAATTGGATGTTTGCATAGAGAAACATGAA
* ** * * *
8867636 GCAAATGCCATCCATTGGTAAGAAAAGTCCATTTATTGTCACTCATCCCATCAAAAGCCTTGTTA
376 GCGAATGCCATCCATTGAAAAGAAAAGTCCATTTATAGTCACTCAT-GCATCGAAAGCCTTGTTA
* * * * ** * * *
8867701 CTCACTTTAAATGGGTTTATATTGTTAGAAATTTTTTAAGTCAAAATCTTTTTAAGTTTTGATTA
440 CTCGCTTTAAATGGTTTTATAATCTTAGAAAGGTTTTAAATAAAAATATTTTTAAGTTTTGATTA
** * * * * * *
8867766 AAATTGAGCATAATTGGATGTTTGCATTGGGAAACATGAAGCGAATGCCATCTATTGACAAGAAT
505 AAATCAAGCATAATTGGATGTTTACATTGGGAAACATGAAGCGAATCCCAACCATTAACAAGAAA
* * * *
8867831 AGTCCATTTATTATCATTCATGCCTTTGAAAGCCTTGTTACTCACTTTAATTGGTTTTATAATCT
570 AGTCCATATATTATCATTCATG-CTATGAAAGCCTTGTTACTCACATTAATTGGTCTTATAATCT
* ** *
8867896 TACAAACGATTTCAAAACAAAATATTTTTCATTTCTGGTTAAAACAAATCATAATTGGAAGTTTT
634 TACAAACGATTTCAAAACAAAATATTTTTAATTTCTCATTAAAACAAATCATAATTGGAAGCTTT
* * * * * *
8867961 CATTAGGAAACATGAAGCGAAAGCTTTCCATTGATAAGAAAAGTCCATTTATTGTAACTTATGCC
699 CATTAGGAAACATGAAGCGAAAGCTATCCATTAACAAGAAAAGTCCATTTATAGTAACTCATACC
*** * * **
8868026 TTAGAAAGCCTTGTTACTTGCTTTAACTGGTTAAATAATCCTATCAATGATATTAAATTGAAATT
764 TTAGAAAGCCTTGTTACGCACTTTAAATGGTTAAATAATCCTATAAATGATATTAAATCAAAATT
8868091 CTTTTCATTTTTCA
829 CTTTTCATTTTTCA
* *
8868105 TTAAAACAGATCTTAATTGGATGTTTGCATTGGAAAATGTGAAGCGAAAGCCATCCATT-AACAA
1 TTAAAACAGATCATAATTGGATGTTTGCATTGGAAAA-GTGAAGCG-ATGCCATCCATTGAA-AA
* * * *
8868169 GAAAAGTCCATTTATAGTCACTCATGCCTTCCAAAGCCTAGTTACTCCCTTTAAAAGGTTTTATA
63 GAAAAGTCCATTTATAGTCACTCATGCCATCAAAAGCCT-TTTACTCGCTTTAAAAGGTTTTATA
* ** * *
8868234 ATCTTATAAATGATTTTAAATCAAAATATTTTTTATTTTTTGTTATCATAGATGATAATTGGATG
127 ATCTTATAAATGATTTTAAATCAAAATATTTTTTATTTTTAGTTAAAATAAATAATAATTGGATG
* * * * **
8868299 TTTGCACTGAGACACATGAAGTGAATGCCATCCATTGACAAGAGAAGTTTATTTATAGTCACTCA
192 TTTGCATTGAGA-ACATGAAGCGAATGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCA
* * *
8868364 TACTATCGAAAGCCTTGTTACTCGCTCTAAATGGTTATAGAATCTTATGAATGATTTTAAATCAG
256 TACT-TCGAAAGCCTTGTTACTCGCT-TAAATGGTTTTATAATCTTATAAATGATTTTAAATCA-
* ** ** * **
8868429 TAT-TTTTTTTTTGGTTAAAATTGATCATAATTTAATGTTTTCGC-TAG-GAAACTTGAAGCGGT
318 AATCTTTTTTTTTGGTTAAAAAAGATCATAATTGGATG-TTT-GCATAGAGAAACATGAAGCGAA
* *
8868491 TGCCATCCATTGAAAAGCAAAGTCCTTTTATAGTCACTCATGCTATCGAAAGCCTTGTTACTCGC
381 TGCCATCCATTGAAAAGAAAAGTCCATTTATAGTCACTCATGC-ATCGAAAGCCTTGTTACTCGC
* * * *
8868556 TCTAAATGGTTTTATAATCTTATAAACGGTTTTAAATAAAAATATTTTTCA-TTTTTAGTTAAAA
445 TTTAAATGGTTTTATAATCTTAGAAA-GGTTTTAAATAAAAATATTTTTAAGTTTTGA-TTAAAA
* * * * * * * *
8868620 TCAATCTTAATTTGATGTTTACATTGGGAAACGTGAAGGGCATCCCAACCATTAATAGGAAAAGT
508 TCAAGCATAATTGGATGTTTACATTGGGAAACATGAAGCGAATCCCAACCATTAACAAGAAAAGT
* *
8868685 CCATATA-TAGTCATTCATG-TATGCAAAAGCCTTGTTACTCTCATTAAGTT-G-CTTACTAATT
573 CCATATATTA-TCATTCATGCTATG--AAAGCCTTGTTACTCACATTAA-TTGGTCTTA-TAATC
* * * ** ** * * *
8868746 TTAGAAATGATTTTAAGTCAATTTTTTTTTTTAATTTTTCATTAAAACAGAA-CATAATTGGATG
633 TTACAAACGATTTCAAAACAA--AATATTTTTAATTTCTCATTAAAACA-AATCATAATTGGAAG
* * * *
8868810 CTTTCA-TAGGGAAACATGGAGCGAAAGGTATCCATTAACAAGAAAAGTTCATTTATAGTCACTC
695 CTTTCATTA-GGAAACATGAAGCGAAAGCTATCCATTAACAAGAAAAGTCCATTTATAGTAACTC
* *** * * * *
8868874 ATACCTTCA-AAAGCCTTGTTGCGCACTTTAAATGGTTTTCTCATCTTATAAATTATTTTAAATC
759 ATACCTT-AGAAAGCCTTGTTACGCACTTTAAATGGTTAAATAATCCTATAAATGATATTAAATC
**
8868938 AAAATAT-TTTTCATTTTTGT
823 AAAAT-TCTTTTCATTTTTCA
* * *
8868958 TTAAAATCA-ATCATAATTGGATGTTTGTATCTGG-GAAGATGAAGCAGATGCCATCCATTGAGA
1 TTAAAA-CAGATCATAATTGGATGTTTGCAT-TGGAAAAG-TGAAGC-GATGCCATCCATTGAAA
* * * * * * *
8869021 ACAAAAGTCCATTTATAGTCACTCAAGCCATCAAAACCCTTTTCAGTCGCTTTAAATGGATATAT
62 AGAAAAGTCCATTTATAGTCACTCATGCCATCAAAAGCCTTTT-ACTCGCTTTAAAAGGTTTTAT
* * ** *
8869086 AATCTTATAAATGATTTTAAATCAAAATTTTTTTTATTTTTAATTAAAATCCATCATAATTGGAT
126 AATCTTATAAATGATTTTAAATCAAAATATTTTTTATTTTTAGTTAAAATAAATAATAATTGGAT
* * * ** * * *
8869151 GCTTGCATTGAGAACCATGAACCGGATGCCAAACATTAATAAGAAAAGTCCATTTCTAGTCACTT
191 GTTTGCATTGAGAA-CATGAAGCGAATGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTC
* * * ** *
8869216 ATCCCTTCAAAAGCCTTGTTACTTGCTTTAACCGATTTTATAATCTTATAAATGATTTTAAATCT
255 AT-ACTTCGAAAGCCTTGTTACTCGC-TTAAATGGTTTTATAATCTTATAAATGATTTTAAATC-
* *
8869281 AAATTCTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTGCATTGAGAAACATGAAGCG
317 AAA-TCTTTT--TTTTTGGTTAAAAAAGATCATAATTGGATGTTTGCATAGAGAAACATGAAGCG
* * * * *
8869346 AAAGCTATCCATTGACAAGAAAAGTTCATTTATAGTCACTCATGCATTCGAAAGCCTTGTTACTT
379 AATGCCATCCATTGAAAAGAAAAGTCCATTTATAGTCACTCATGCA-TCGAAAGCCTTGTTACTC
*
8869411 GCTTTAAATGGTTATATA
443 GCTTTAAATGGTTTTATA
8869429 TGTCAAGGAT
Statistics
Matches: 1737, Mismatches: 334, Indels: 189
0.77 0.15 0.08
Matches are distributed among these distances:
831 3 0.00
832 4 0.00
833 174 0.10
834 141 0.08
835 13 0.01
836 1 0.00
837 1 0.00
839 3 0.00
842 8 0.00
843 147 0.08
844 120 0.07
845 9 0.01
848 1 0.00
849 6 0.00
850 123 0.07
851 135 0.08
852 22 0.01
853 449 0.26
854 256 0.15
855 7 0.00
856 6 0.00
857 108 0.06
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (842 bp):
TTAAAACAGATCATAATTGGATGTTTGCATTGGAAAAGTGAAGCGATGCCATCCATTGAAAAGAA
AAGTCCATTTATAGTCACTCATGCCATCAAAAGCCTTTTACTCGCTTTAAAAGGTTTTATAATCT
TATAAATGATTTTAAATCAAAATATTTTTTATTTTTAGTTAAAATAAATAATAATTGGATGTTTG
CATTGAGAACATGAAGCGAATGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATACTT
CGAAAGCCTTGTTACTCGCTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAATCTTTT
TTTTTGGTTAAAAAAGATCATAATTGGATGTTTGCATAGAGAAACATGAAGCGAATGCCATCCAT
TGAAAAGAAAAGTCCATTTATAGTCACTCATGCATCGAAAGCCTTGTTACTCGCTTTAAATGGTT
TTATAATCTTAGAAAGGTTTTAAATAAAAATATTTTTAAGTTTTGATTAAAATCAAGCATAATTG
GATGTTTACATTGGGAAACATGAAGCGAATCCCAACCATTAACAAGAAAAGTCCATATATTATCA
TTCATGCTATGAAAGCCTTGTTACTCACATTAATTGGTCTTATAATCTTACAAACGATTTCAAAA
CAAAATATTTTTAATTTCTCATTAAAACAAATCATAATTGGAAGCTTTCATTAGGAAACATGAAG
CGAAAGCTATCCATTAACAAGAAAAGTCCATTTATAGTAACTCATACCTTAGAAAGCCTTGTTAC
GCACTTTAAATGGTTAAATAATCCTATAAATGATATTAAATCAAAATTCTTTTCATTTTTCA
Found at i:8870635 original size:169 final size:172
Alignment explanation
Indices: 8870440--8870810 Score: 421
Period size: 169 Copynumber: 2.2 Consensus size: 172
8870430 TGGGTGCCAT
* * * *
8870440 CATTGACAAGAAAAGTCCATTTATAGTCACACATGCCTTTGAAAGGCTTGTTAGTCACTTTAAAT
1 CATTAACAAGAAAAGTCCATTTATAGTCACACATGCCTTCGAAAGCCTTGTTACTCACTTTAAAT
* * * * ** *
8870505 GGTTTTATAATC-TAGTAAATGATTT-TATATCAAAATT-TTTTCATTCTT-ATTAAAGTAGATC
66 GCTATAATAATCTTA-TAAATGATTTCCA-ATCAAAATTGTTTTCATTCTTGATTAAAACAGACC
* *
8870566 AT-AATTGGATGTTTGCATCAGGAAACATGAAGCCAAAGCAATC-
129 ATAAATTAGATGTTTGCATCAAGAAACATGAAGCCAAAGCAA-CG
* ** * * *
8870609 CATTAACAAAAAAAGTCCATTTATAGTCATTCTTGCCTTCGAAAGCCTTGTTACTCGCTTTAAGT
1 CATTAACAAGAAAAGTCCATTTATAGTCACACATGCCTTCGAAAGCCTTGTTACTCACTTTAAAT
* * * *
8870674 GCTATAATAATCTTATAAATGATTTCCAATCGAATTTGTTTTCATTTTTGGTTAAAACAGACCAT
66 GCTATAATAATCTTATAAATGATTTCCAATCAAAATTGTTTTCATTCTTGATTAAAACAGACCAT
* ** *
8870739 AAATTAGATGTTTGGATCAAGAAACATGAAGTGAAAGCCACG
131 AAATTAGATGTTTGCATCAAGAAACATGAAGCCAAAGCAACG
*
8870781 CATTAAGAAGAAAAGTCCATTTATAGTCAC
1 CATTAACAAGAAAAGTCCATTTATAGTCAC
8870811 TCATCCCATT
Statistics
Matches: 166, Mismatches: 30, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
169 81 0.49
170 13 0.08
171 12 0.07
172 60 0.36
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (172 bp):
CATTAACAAGAAAAGTCCATTTATAGTCACACATGCCTTCGAAAGCCTTGTTACTCACTTTAAAT
GCTATAATAATCTTATAAATGATTTCCAATCAAAATTGTTTTCATTCTTGATTAAAACAGACCAT
AAATTAGATGTTTGCATCAAGAAACATGAAGCCAAAGCAACG
Found at i:8870806 original size:172 final size:169
Alignment explanation
Indices: 8870440--8870886 Score: 415
Period size: 172 Copynumber: 2.6 Consensus size: 169
8870430 TGGGTGCCAT
* * * *
8870440 CATTGACAAGAAAAGTCCATTTATAGTCACACATGCCTTTGAAAGGCTTGTTAGTCACTTTAAAT
1 CATTAACAAGAAAAGTCCATTTATAGTCACACATGCCTTCGAAAGCCTTGTTACTCACTTTAAAT
* * * * ** *
8870505 GGTTTTATAATCTAGTAAATGATTTTATATCAAAATTTTTTCATTCTTATTAAAGTAGATCATAA
66 GCTATAATAATCTAGTAAATGATTTCATATCAAAATTTTTTCATTCTTATTAAAACAGACCATAA
* *
8870570 TTGGATGTTTGCATCAGGAAACATGAAGCCAAAGCAATC
131 TTAGATGTTTGCATCAAGAAACATGAAGCCAAAGCAATC
* ** * * *
8870609 CATTAACAAAAAAAGTCCATTTATAGTCATTCTTGCCTTCGAAAGCCTTGTTACTCGCTTTAAGT
1 CATTAACAAGAAAAGTCCATTTATAGTCACACATGCCTTCGAAAGCCTTGTTACTCACTTTAAAT
* * * *
8870674 GCTATAATAATCTTA-TAAATGATTTCCA-ATCGAATTTGTTTTCATTTTTGGTTAAAACAGACC
66 GCTATAATAATC-TAGTAAATGATTT-CATATCAAAATT-TTTTCATTCTT-ATTAAAACAGACC
* ** *
8870737 ATAAATTAGATGTTTGGATCAAGAAACATGAAGTGAAAGCCA-C
127 AT-AATTAGATGTTTGCATCAAGAAACATGAAGCCAAAGCAATC
* * * * * * *
8870780 GCATTAAGAAGAAAAGTCCATTTATAGTCACTCATCCCATT-AAAAGCCTTATTGCTTACTTTAA
1 -CATTAACAAGAAAAGTCCATTTATAGTCACACATGCC-TTCGAAAGCCTTGTTACTCACTTTAA
* * * * *
8870844 AAG-TATAAT--TTTAG-AAATAATTTTAAATCAAAATCTTTTTCAT
64 ATGCTATAATAATCTAGTAAATGATTTCATATCAAAAT-TTTTTCAT
8870887 ATTTGGTTAA
Statistics
Matches: 224, Mismatches: 44, Indels: 21
0.78 0.15 0.07
Matches are distributed among these distances:
167 1 0.00
168 23 0.10
169 83 0.37
170 13 0.06
171 18 0.08
172 84 0.38
173 2 0.01
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (169 bp):
CATTAACAAGAAAAGTCCATTTATAGTCACACATGCCTTCGAAAGCCTTGTTACTCACTTTAAAT
GCTATAATAATCTAGTAAATGATTTCATATCAAAATTTTTTCATTCTTATTAAAACAGACCATAA
TTAGATGTTTGCATCAAGAAACATGAAGCCAAAGCAATC
Found at i:8871515 original size:170 final size:169
Alignment explanation
Indices: 8871085--8872203 Score: 756
Period size: 171 Copynumber: 6.7 Consensus size: 169
8871075 AAGAGTACAA
* * * * * *
8871085 CATCCATTGACAA-TAAAGTCCACTTATAGCCACTCATGCCTTCAAAAGCCTTGTTACTCGCTTT
1 CATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCAT-GAAAGCCTTGTTACTTGCTTT
* * * * * * **
8871149 AAGT-GGTTTAACAATCCTATAAATGGTTGTAAATCAAAATTTTTTTCATTCTTAGTTAAAATAG
65 AAATGGGTTT-ATAATCTTATAAATGATTTTAAATCAAAATTTTTTT-ATTTTTAGTTAAAATCC
* * * * ** *
8871213 ATCCTAATTGAATTTTTG--TAAAGGGAAACACAAAGC-GAATGT
128 ATCATAATTGGATGTTTGCATCAA--GAAACATGAAGCAG-ATGC
* * * * ** * *
8871255 TATCCAATGAGAAGAAAAGTCTATTTATAGTCACTCATGTTATTGAAAGCCTTGTTACATGTTTT
1 CATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCA-TGAAAGCCTTGTTACTTGCTTT
* *
8871320 AAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTTTGTTTTTAGTTAAAATCCA
65 AAATGGGTTTATAATCTTATAAATGATTTTAAATCAAAAT-TTTTTTATTTTTAGTTAAAATCCA
* * *
8871385 TC-TGAATTGGATGTTTGCCTCAAGAAACATAAACCAGATGC
129 TCAT-AATTGGATGTTTGCATCAAGAAACATGAAGCAGATGC
* *
8871426 CATCCATTGACAAGAATAGTCCATTTATAGTCAC-CATGCCATGGAAAGCCTTGTAACTTGCTTT
1 CATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCAT-GAAAGCCTTGTTACTTGCTTT
** * * * * * *
8871490 AAATGGGTTTATAATCTTATAAATGATTTTAAATTGAAATCTTTGTAATATATGGTTAAAATCGA
65 AAATGGGTTTATAATCTTATAAATGATTTTAAATCAAAAT-TTTTTTATTTTTAGTTAAAATCCA
* *** * *
8871555 TCCTAATTGGATGTTTGCATTGGGACACGTGAAGC-GAATGC
129 TCATAATTGGATGTTTGCATCAAGAAACATGAAGCAG-ATGC
* * * * * ** * *
8871596 CAACCATTGACTAGAAAAGCCCATTTATAGTAACTCAT-TC-T-TTA---TTGCT-CAT--TTTA
1 CATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATGAAAGCCTTGTTACTTGCTTTA
* * * * * *
8871652 AGT-GGTTTAATAATCTTAGAAATAATTTTAAACCAAAAATGTTTTTCATTTCTAGTTAAAA-CA
66 AATGGGTTT-ATAATCTTATAAATGATTTTAAATC-AAAAT-TTTTTTATTTTTAGTTAAAATC-
* * * * *
8871715 TATCATAATTTGATATTTGCATCGAA-AATCATGAAGCAGAAGC
127 CATCATAATTGGATGTTTGCATC-AAGAAACATGAAGCAGATGC
* * *
8871758 CACCCATTGACAAAAAAAGTCCATTTATAGTCACTCATGCTATCGAAAGCCTTGTTACTTGCTTT
1 CATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCAT-GAAAGCCTTGTTACTTGCTTT
* * * * *
8871823 AAATGGTTTTAAAATCTTATCAATGATTTTAAATCAAAATATTTTTTGTTTTTAGTTAAAATGCA
65 AAATGGGTTTATAATCTTATAAATGATTTTAAATCAAAAT-TTTTTTATTTTTAGTTAAAATCCA
*** **
8871888 TCATAATTGGATGTTTGCATTGGGAAATGTGAA--AGATGC
129 TCATAATTGGATGTTTGCATCAAGAAACATGAAGCAGATGC
* * * *
8871927 CATCCATTGAGAAGAAAAGTACATTTATAGTCACT--T---A-G---TCCTTTTTACTTGCTTTA
1 CATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATGAAAGCCTTGTTACTTGCTTTA
* * * * ** * * *
8871983 AAAGGTTTTATAATCTTATAAAAGATTTTAAATAAAAATTTTTTCGTTTTTGGTTACAATCAATC
66 AATGGGTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTTTATTTTTAGTTAAAATCCATC
* * **
8872048 ATAATTGGAT-TTTGGTATCATGAAACATGAAGTGGATGC
131 ATAATTGGATGTTT-GCATCAAGAAACATGAAGCAGATGC
* * *** * * * * * *
8872087 CATCCATTGACCAAAAAAAATCCAAACATAGTTATTCATACCTTTGAAAGCCTTATTACTCGCTT
1 CATCCATTGA-CAAGAAAAGTCCATTTATAGTCACTCATGCC-ATGAAAGCCTTGTTACTTGCTT
* * * *
8872152 TAAGT-GGTTTAATACTCTTTTAAATGATTTTAAATCAAAATTTCTTTCATTT
64 TAAATGGGTTT-ATAATCTTATAAATGATTTTAAATCAAAATTT-TTTTATTT
8872204 ATGATAAAAA
Statistics
Matches: 734, Mismatches: 169, Indels: 90
0.74 0.17 0.09
Matches are distributed among these distances:
157 3 0.00
158 42 0.06
159 50 0.07
160 20 0.03
161 44 0.06
162 82 0.11
163 4 0.01
164 5 0.01
166 1 0.00
167 2 0.00
168 1 0.00
169 43 0.06
170 154 0.21
171 231 0.31
172 45 0.06
173 7 0.01
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.37
Consensus pattern (169 bp):
CATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATGAAAGCCTTGTTACTTGCTTTA
AATGGGTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTTTATTTTTAGTTAAAATCCATC
ATAATTGGATGTTTGCATCAAGAAACATGAAGCAGATGC
Found at i:8872402 original size:18 final size:19
Alignment explanation
Indices: 8872376--8872423 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
8872366 ATAACGGGTA
*
8872376 AAAAGAATATTTTA-GAAT
1 AAAATAATATTTTATGAAT
* *
8872394 AAAATAATAATTTATTAAT
1 AAAATAATATTTTATGAAT
8872413 AAAATAATATT
1 AAAATAATATT
8872424 AAAAAATTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 12 0.48
19 13 0.52
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (19 bp):
AAAATAATATTTTATGAAT
Found at i:8872406 original size:19 final size:19
Alignment explanation
Indices: 8872376--8872421 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
8872366 ATAACGGGTA
* *
8872376 AAAAGAATATTTTA-GAAT
1 AAAATAATAATTTATGAAT
*
8872394 AAAATAATAATTTATTAAT
1 AAAATAATAATTTATGAAT
8872413 AAAATAATA
1 AAAATAATA
8872422 TTAAAAAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
18 12 0.50
19 12 0.50
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (19 bp):
AAAATAATAATTTATGAAT
Found at i:8879252 original size:36 final size:34
Alignment explanation
Indices: 8879197--8879291 Score: 102
Period size: 36 Copynumber: 2.6 Consensus size: 34
8879187 AGCCTAGCTT
8879197 CCTCTCTTTTCCT-TCCAAAAAATCCAGCAGCACAAGG
1 CCTCTC-TTTCCTCT-C-AAAAATCCA-CAGCACAAGG
* *
8879234 TCTCTCTTTCCTCTCAAAAATCGACAGCACAAGG
1 CCTCTCTTTCCTCTCAAAAATCCACAGCACAAGG
*
8879268 CCTCTCGTTCCTCTCTCAAAAATC
1 CCTCTC-TTTC-CTCTCAAAAATC
8879292 AACTCCTTTC
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
34 15 0.29
35 11 0.22
36 19 0.37
37 6 0.12
ACGTcount: A:0.27, C:0.36, G:0.09, T:0.27
Consensus pattern (34 bp):
CCTCTCTTTCCTCTCAAAAATCCACAGCACAAGG
Found at i:8879267 original size:34 final size:37
Alignment explanation
Indices: 8879214--8879291 Score: 108
Period size: 34 Copynumber: 2.2 Consensus size: 37
8879204 TTTCCTTCCA
* *
8879214 AAAAATCCAGCAGCACAAGGTCTCTC-TTTC-CTCTC
1 AAAAATCCAGCAGCACAAGGCCTCTCGTTCCTCTCTC
*
8879249 AAAAATCGA-CAGCACAAGGCCTCTCGTTCCTCTCTC
1 AAAAATCCAGCAGCACAAGGCCTCTCGTTCCTCTCTC
8879285 AAAAATC
1 AAAAATC
8879292 AACTCCTTTC
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
34 15 0.39
35 11 0.29
36 12 0.32
ACGTcount: A:0.32, C:0.33, G:0.12, T:0.23
Consensus pattern (37 bp):
AAAAATCCAGCAGCACAAGGCCTCTCGTTCCTCTCTC
Found at i:8894323 original size:34 final size:35
Alignment explanation
Indices: 8894254--8894329 Score: 86
Period size: 34 Copynumber: 2.2 Consensus size: 35
8894244 TTTTCCTTTC
*
8894254 CAAAAATCCAGCAGCACAAGGTCTCTCTTTTCTCT
1 CAAAAATCCAGCAACACAAGGTCTCTCTTTTCTCT
*
8894289 CAAAAATCGA-CAACACAAGG-C-CTCTTGTTCCTCT
1 CAAAAATCCAGCAACACAAGGTCTCTCTT-TT-CTCT
8894323 CTAAAAA
1 C-AAAAA
8894330 ATCAGCTCCT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
32 5 0.14
33 3 0.08
34 14 0.39
35 14 0.39
ACGTcount: A:0.34, C:0.30, G:0.11, T:0.25
Consensus pattern (35 bp):
CAAAAATCCAGCAACACAAGGTCTCTCTTTTCTCT
Found at i:8905792 original size:172 final size:171
Alignment explanation
Indices: 8905444--8906602 Score: 1165
Period size: 171 Copynumber: 6.8 Consensus size: 171
8905434 AGATCATTAC
* * * * * * **
8905444 AAAATGTCCATTTGTAGTCACTCATGGCTTTGAAAGCCTTGTTACTCACATTGAATAATTTTATA
1 AAAA-GTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTCACTTTAAATGGTTTTATA
* * * * *
8905509 ATATTATGAATGATTTTAAATCAAAAT-ATTTT--TTTTTGGTTCAAATCGATCATAATTGGATG
65 ATCTTATAAATGATTTTAAATCAAAATCTTTTTCGTTTTTGGTTAAAATCAATCATAATTGGATG
* * *
8905571 TGTGCATCAAGAAACATGAAGTAGATGCCATCCATTGAGAAG
130 TTTGCATTAAGAAACATGAAGTAGATGCCATCCATTGACAAG
* * * * *
8905613 AAAAGTCCATATATAGTCACTCATGCCATTGAAAGCCTTATTACTCACTTTAAATGGATTTACAA
1 AAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTCACTTTAAATGGTTTTATAA
* * * * *
8905678 TCTTATAAATGATTTGAAATGAAAAATCTTTTTCGTTTTTGGTTAAAATAAATCATGATTGTATG
66 TCTTATAAATGATTTTAAAT-CAAAATCTTTTTCGTTTTTGGTTAAAATCAATCATAATTGGATG
* * * *
8905743 TTTCCATCAAAAAACATGAAGTAGATGCCA-CACATT-ATTAAG
130 TTTGCATTAAGAAACATGAAGTAGATGCCATC-CATTGA-CAAG
* * * * *
8905785 AAAAGTCCATTTATAATCAC-CAATACCATTGAAAGCCTTGTTACTCCCTTAAAATGGTTTTATA
1 AAAAGTCCATTTATAGTCACTC-ATGCCATCGAAAGCCTTGTTACTCACTTTAAATGGTTTTATA
* * * ** *
8905849 ATCTTATCAATGATTTTAAATCAAAATAC-ATTTCATTTTTGGTTAAAATTGATTATAATTGGAT
65 ATCTTATAAATGATTTTAAATCAAAAT-CTTTTTCGTTTTTGGTTAAAATCAATCATAATTGGAT
* ** ** * * * * *
8905913 GTTTACATTGGGAAATGTGAAGTGGATACTATCCATTGATAAA
129 GTTTGCATTAAGAAACATGAAGTAGATGCCATCCATTGACAAG
* * * *
8905956 AAAAGTCCATTTAGAGTCACTCATGCCATCAAAAGCCTCGTTACTCGCTTTAAATGGTTTTATAA
1 AAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTCACTTTAAATGGTTTTATAA
* ** * *
8906021 TCTTATAGATGATTTTAAATCAAAATCTTTTTTATTTTTGCTTAAAATTAATCATAATTGGATGT
66 TCTTATAAATGATTTTAAATCAAAATCTTTTTCGTTTTTGGTTAAAATCAATCATAATTGGATGT
* * * * * * * *
8906086 TTCCGTTGAGAAACATGAAGCAGATACTATTCGTTGACAAG
131 TTGCATTAAGAAACATGAAGTAGATGCCATCCATTGACAAG
* * ** * *
8906127 AAAAGTCCATTTATAGTCACTCATGCCATCCAAAAG-CTTGTTCCTTGCTTAAAATGGTTTTAAA
1 AAAAGTCCATTTATAGTCACTCATGCCAT-CGAAAGCCTTGTTACTCACTTTAAATGGTTTTATA
* * * *
8906191 ATCTTA-ATAATGATTTTAATTTAAAATATTTTTTGTTTTTGGTTAAAATCAATCATAATT-GAT
65 ATCTTATA-AATGATTTTAAATCAAAATCTTTTTCGTTTTTGGTTAAAATCAATCATAATTGGAT
* * * * * * * *
8906254 GTTAGAATT-GGTAAACCTGAAGCAGAT-CCAATCTATTAAGAAG
129 GTTTGCATTAAG-AAACATGAAGTAGATGCC-ATCCATTGACAAG
* *
8906297 AAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAA
1 AAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTCACTTTAAATGGTTTTATAA
* * * * **
8906362 TCTTATAAATGATTTCAAATCAAAATCTTTTTTTGTTTTTAGCTAAAATCCCTCATAATTGGATG
66 TCTTATAAATGATTTTAAATCAAAATC-TTTTTCGTTTTTGGTTAAAATCAATCATAATTGGATG
*
8906427 TTTGCATTAAGAAACATGAGGTAGATGCCATCCATTGACAAG
130 TTTGCATTAAGAAACATGAAGTAGATGCCATCCATTGACAAG
* * * * * *
8906469 ATAAGTCTATTTATAGTCACTCATGCCACCGAAAGCCTTATTACT-AGTTTTGAATGGTTTTATA
1 AAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTCA-CTTTAAATGGTTTTATA
* * * *
8906533 ATGTTATAAATGATTTTAAATCAAATTCTTTTTCATTTTTTGGTTGAAATCAATCATAATTGGAT
65 ATCTTATAAATGATTTTAAATCAAAATCTTTTTC-GTTTTTGGTTAAAATCAATCATAATTGGAT
8906598 GTTTG
129 GTTTG
8906603 TAGAGAATTG
Statistics
Matches: 822, Mismatches: 144, Indels: 45
0.81 0.14 0.04
Matches are distributed among these distances:
168 67 0.08
169 16 0.02
170 110 0.13
171 341 0.41
172 285 0.35
173 3 0.00
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.38
Consensus pattern (171 bp):
AAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTCACTTTAAATGGTTTTATAA
TCTTATAAATGATTTTAAATCAAAATCTTTTTCGTTTTTGGTTAAAATCAATCATAATTGGATGT
TTGCATTAAGAAACATGAAGTAGATGCCATCCATTGACAAG
Found at i:8908157 original size:77 final size:77
Alignment explanation
Indices: 8907916--8908145 Score: 370
Period size: 77 Copynumber: 3.0 Consensus size: 77
8907906 AAATGCCACC
* * **
8907916 AATTTTAATTTTGGGTGATTCATAAAGATTAGGAAACTGTTTCCTACTTTGGAAGCAATTCCTAA
1 AATTTTAATTTTGGGTGATTCATAAAGAATAGGAAATTGTTTCCTACTTTAAAAGCAATTCCTAA
8907981 AATTAAGGATAA
66 AATTAAGGATAA
*
8907993 AATTTTAATTTTGGGTGATTCATAAAGAATAGGAAATTGTTTCTTACTTTAAAAGCAATTCCTAA
1 AATTTTAATTTTGGGTGATTCATAAAGAATAGGAAATTGTTTCCTACTTTAAAAGCAATTCCTAA
* *
8908058 AATTAACGATAC
66 AATTAAGGATAA
* * *
8908070 AATTTTAATTTTAGGTGATTCATAAAGAATAGGAAATTTTTTCCTACTTTAAAAGAAATTCCTAA
1 AATTTTAATTTTGGGTGATTCATAAAGAATAGGAAATTGTTTCCTACTTTAAAAGCAATTCCTAA
8908135 AATTAAGGATA
66 AATTAAGGATA
8908146 GTATTTCAAT
Statistics
Matches: 141, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
77 141 1.00
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.37
Consensus pattern (77 bp):
AATTTTAATTTTGGGTGATTCATAAAGAATAGGAAATTGTTTCCTACTTTAAAAGCAATTCCTAA
AATTAAGGATAA
Found at i:8910009 original size:22 final size:22
Alignment explanation
Indices: 8909984--8910031 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
8909974 TCGCTACAAC
* *
8909984 GAGAATTCATTTCCGCTGCAGT
1 GAGAATCCATTTCCACTGCAGT
* *
8910006 GAGAATCCATTTTCACTGTAGT
1 GAGAATCCATTTCCACTGCAGT
8910028 GAGA
1 GAGA
8910032 TTTAGGGTAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (22 bp):
GAGAATCCATTTCCACTGCAGT
Found at i:8910331 original size:37 final size:37
Alignment explanation
Indices: 8910290--8910423 Score: 110
Period size: 37 Copynumber: 3.4 Consensus size: 37
8910280 ATAGTGTGCA
8910290 CCCCCACATCGCGCACAACTAATGCCATCATGTGTTC
1 CCCCCACATCGCGCACAACTAATGCCATCATGTGTTC
* * *
8910327 CCCCCACATCGCGCACATGGCATATAT-CATCATTATCGTGTGC
1 CCCCCACATCGCGCACA--AC-TA-ATGC--CATCAT-GTGTTC
* *
8910370 ACCCCCACATCGCTCACAACTAATGCCCTCATGT-TCTC
1 -CCCCCACATCGCGCACAACTAATGCCATCATGTGT-TC
* *
8910408 CCCGCACATCACGCAC
1 CCCCCACATCGCGCAC
8910424 TTAGGCATCT
Statistics
Matches: 76, Mismatches: 11, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
37 31 0.41
38 3 0.04
39 5 0.07
40 5 0.07
41 5 0.07
42 6 0.08
43 5 0.07
44 16 0.21
ACGTcount: A:0.24, C:0.42, G:0.13, T:0.22
Consensus pattern (37 bp):
CCCCCACATCGCGCACAACTAATGCCATCATGTGTTC
Found at i:8911356 original size:20 final size:20
Alignment explanation
Indices: 8911318--8911356 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
8911308 AAGAAGGAGA
*
8911318 AGAAGATGCTAGAAGTTAGG
1 AGAAGATGCTAGAAATTAGG
* *
8911338 AGAAGTTGCTGGAAATTAG
1 AGAAGATGCTAGAAATTAG
8911357 ATATTTATAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.38, C:0.05, G:0.33, T:0.23
Consensus pattern (20 bp):
AGAAGATGCTAGAAATTAGG
Found at i:8911437 original size:47 final size:47
Alignment explanation
Indices: 8911368--8911457 Score: 153
Period size: 47 Copynumber: 1.9 Consensus size: 47
8911358 TATTTATATA
*
8911368 TAAAGTTTATCCAATTTTTCACGTAAATTACCAAAATGCCCTTGACC
1 TAAAGTTTATCCAATTTCTCACGTAAATTACCAAAATGCCCTTGACC
* *
8911415 TAAAGTTTATCTAATTTCTCACGTAAATTACTAAAATGCCCTT
1 TAAAGTTTATCCAATTTCTCACGTAAATTACCAAAATGCCCTT
8911458 AACAAGGTCA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 40 1.00
ACGTcount: A:0.34, C:0.21, G:0.08, T:0.37
Consensus pattern (47 bp):
TAAAGTTTATCCAATTTCTCACGTAAATTACCAAAATGCCCTTGACC
Found at i:8916867 original size:37 final size:37
Alignment explanation
Indices: 8916817--8916925 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
8916807 CATATACATA
8916817 CATCATCATCATGTGTGCACTCCCTACTCGCACACTC
1 CATCATCATCATGTGTGCACTCCCTACTCGCACACTC
* * *
8916854 CATCATCGTCATGTGTGCACACCCTACTCTCACACTC
1 CATCATCATCATGTGTGCACTCCCTACTCGCACACTC
*
8916891 AATCATCATCATGTGTGCACTCCCTACTCGCACAC
1 CATCATCATCATGTGTGCACTCCCTACTCGCACAC
8916926 CTTAATATCA
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.23, C:0.39, G:0.11, T:0.27
Consensus pattern (37 bp):
CATCATCATCATGTGTGCACTCCCTACTCGCACACTC
Found at i:8916936 original size:37 final size:37
Alignment explanation
Indices: 8916818--8916938 Score: 181
Period size: 37 Copynumber: 3.3 Consensus size: 37
8916808 ATATACATAC
*
8916818 ATCATCATCATGTGTGCACTCCCTACTCGCACACTCC
1 ATCATCATCATGTGTGCACTCCCTACTCGCACACTCA
* * *
8916855 ATCATCGTCATGTGTGCACACCCTACTCTCACACTCA
1 ATCATCATCATGTGTGCACTCCCTACTCGCACACTCA
*
8916892 ATCATCATCATGTGTGCACTCCCTACTCGCACACCTTA
1 ATCATCATCATGTGTGCACTCCCTACTCGCACA-CTCA
8916930 AT-ATCATCA
1 ATCATCATCA
8916939 CCCAACCTCA
Statistics
Matches: 75, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
37 70 0.93
38 5 0.07
ACGTcount: A:0.25, C:0.37, G:0.10, T:0.28
Consensus pattern (37 bp):
ATCATCATCATGTGTGCACTCCCTACTCGCACACTCA
Found at i:8917476 original size:19 final size:20
Alignment explanation
Indices: 8917438--8917477 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
8917428 AGAAGAAGAC
8917438 AAGCTGCTGAAAATTTCAAG
1 AAGCTGCTGAAAATTTCAAG
* *
8917458 AAGCTGTTGGAAA-TTCAAG
1 AAGCTGCTGAAAATTTCAAG
8917477 A
1 A
8917478 TATTTATAGC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.40, C:0.12, G:0.23, T:0.25
Consensus pattern (20 bp):
AAGCTGCTGAAAATTTCAAG
Found at i:8919487 original size:35 final size:35
Alignment explanation
Indices: 8919443--8919719 Score: 265
Period size: 35 Copynumber: 7.9 Consensus size: 35
8919433 TCCTTAAGAA
***
8919443 GCCCAAATAACTTAATTGTTTAATTTAATCAATTAG
1 GCCC-AATAACTTAATTAAATAATTTAATCAATTAG
* *
8919479 GCCCAATAACTTAATTAAATAATTTAATTAATTAA
1 GCCCAATAACTTAATTAAATAATTTAATCAATTAG
* * *
8919514 GCCCAATAATTTAATTAAACAATTTTAATCAACTAG
1 GCCCAATAACTTAATTAAATAA-TTTAATCAATTAG
* * * *
8919550 GCCTAATGACTTAATTAAACAAATTCAATCAATTAG
1 GCCCAATAACTTAATTAAA-TAATTTAATCAATTAG
*** *
8919586 GCCCAATAACTTAATTTTTTAATTTAATTAATTAG
1 GCCCAATAACTTAATTAAATAATTTAATCAATTAG
* *
8919621 GCCCAATGACTTAATTAAATAATTTAATTAATTAG
1 GCCCAATAACTTAATTAAATAATTTAATCAATTAG
* * * * *
8919656 ACCCAATGA-TTCAATTAAACAATTTAGTTAATTAG
1 GCCCAATAACTT-AATTAAATAATTTAATCAATTAG
*
8919691 G--C-ATAACTTAATTAAACAATTTTAATCAA
1 GCCCAATAACTTAATTAAATAA-TTTAATCAA
8919720 GTGCTTGAGA
Statistics
Matches: 201, Mismatches: 35, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
32 13 0.06
33 10 0.05
34 2 0.01
35 119 0.59
36 55 0.27
37 2 0.01
ACGTcount: A:0.43, C:0.14, G:0.06, T:0.36
Consensus pattern (35 bp):
GCCCAATAACTTAATTAAATAATTTAATCAATTAG
Found at i:8919596 original size:107 final size:105
Alignment explanation
Indices: 8919464--8919712 Score: 308
Period size: 107 Copynumber: 2.4 Consensus size: 105
8919454 TTAATTGTTT
*
8919464 AATTTAATCAATTAGGCCCAATAACTTAATTAAATAATTTAATTAATTAAGCCCAATAATTTAAT
1 AATTTAATCAATTAGGCCCAATAACTTAATTAAATAATTTAATTAATTAAGCCCAATAACTTAAT
* *
8919529 TAAACAATTTTAATCAACTAGGCCTAATGACTT-AATTAAAC
66 TAAACAA-TTTAATCAACTAGACCCAATGA-TTCAATTAAAC
* *** * *
8919570 AAATTCAATCAATTAGGCCCAATAACTTAATTTTTTAATTTAATTAATTAGGCCCAATGACTTAA
1 -AATTTAATCAATTAGGCCCAATAACTTAATTAAATAATTTAATTAATTAAGCCCAATAACTTAA
* * *
8919635 TTAAATAATTTAATTAATTAGACCCAATGATTCAATTAAAC
65 TTAAACAATTTAATCAACTAGACCCAATGATTCAATTAAAC
* * *
8919676 AATTTAGTTAATTAGG--C-ATAACTTAATTAAACAATTT
1 AATTTAATCAATTAGGCCCAATAACTTAATTAAATAATTT
8919713 TAATCAAGTG
Statistics
Matches: 122, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
102 16 0.13
103 1 0.01
105 15 0.12
106 26 0.21
107 64 0.52
ACGTcount: A:0.44, C:0.13, G:0.06, T:0.37
Consensus pattern (105 bp):
AATTTAATCAATTAGGCCCAATAACTTAATTAAATAATTTAATTAATTAAGCCCAATAACTTAAT
TAAACAATTTAATCAACTAGACCCAATGATTCAATTAAAC
Found at i:8927627 original size:35 final size:35
Alignment explanation
Indices: 8927602--8927829 Score: 251
Period size: 35 Copynumber: 6.5 Consensus size: 35
8927592 TTAATTGTTT
8927602 AATTTAATCAATTAGGCCCAATAACTTAATTAAAC
1 AATTTAATCAATTAGGCCCAATAACTTAATTAAAC
* * * **
8927637 AATTTAATTAATTAAGCCCAACATTTTAATTAAAC
1 AATTTAATCAATTAGGCCCAATAACTTAATTAAAC
* * *
8927672 AATTTTAATCAACTAGGCCTAATGACTTAATTAAAC
1 AA-TTTAATCAATTAGGCCCAATAACTTAATTAAAC
* ****
8927708 AAATTCAATCAATTAGGCCCAATAACTTAATTGTTT
1 -AATTTAATCAATTAGGCCCAATAACTTAATTAAAC
* *
8927744 AATTTAATTAATTAGGCCCAATGACTTAATTAAAC
1 AATTTAATCAATTAGGCCCAATAACTTAATTAAAC
* *
8927779 AATTTAATTAATTAGGCCCAATGA-TTCAATTAAAC
1 AATTTAATCAATTAGGCCCAATAACTT-AATTAAAC
* *
8927814 AATTTAGTTAATTAGG
1 AATTTAATCAATTAGG
8927830 TACAACTTAA
Statistics
Matches: 161, Mismatches: 29, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
34 2 0.01
35 107 0.66
36 50 0.31
37 2 0.01
ACGTcount: A:0.43, C:0.14, G:0.08, T:0.35
Consensus pattern (35 bp):
AATTTAATCAATTAGGCCCAATAACTTAATTAAAC
Found at i:8927727 original size:107 final size:106
Alignment explanation
Indices: 8927602--8927815 Score: 288
Period size: 107 Copynumber: 2.0 Consensus size: 106
8927592 TTAATTGTTT
* *
8927602 AATTTAATCAATTAGGCCCAATAACTTAATTAAACAATTTAATTAATTAAGCCCAA-CATTTTAA
1 AATTCAATCAATTAGGCCCAATAACTTAATTAAACAATTTAATTAATTAAGCCCAATCA-CTTAA
*
8927666 TTAAACAATTTTAATCAACTAGGCCTAATGACTT-AATTAAACA
65 TTAAACAA-TTTAATCAACTAGGCCCAATGA-TTCAATTAAACA
**** * *
8927709 AATTCAATCAATTAGGCCCAATAACTTAATTGTTTAATTTAATTAATTAGGCCCAATGACTTAAT
1 AATTCAATCAATTAGGCCCAATAACTTAATTAAACAATTTAATTAATTAAGCCCAATCACTTAAT
* *
8927774 TAAACAATTTAATTAATTAGGCCCAATGATTCAATTAAACA
66 TAAACAATTTAATCAACTAGGCCCAATGATTCAATTAAACA
8927815 A
1 A
8927816 TTTAGTTAAT
Statistics
Matches: 94, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
105 2 0.02
106 29 0.31
107 62 0.66
108 1 0.01
ACGTcount: A:0.43, C:0.15, G:0.07, T:0.34
Consensus pattern (106 bp):
AATTCAATCAATTAGGCCCAATAACTTAATTAAACAATTTAATTAATTAAGCCCAATCACTTAAT
TAAACAATTTAATCAACTAGGCCCAATGATTCAATTAAACA
Found at i:8932434 original size:2 final size:2
Alignment explanation
Indices: 8932429--8932478 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
8932419 NNNNNNNNNN
8932429 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8932471 TA TA TA TA
1 TA TA TA TA
8932479 AGCACATACA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8932612 original size:61 final size:60
Alignment explanation
Indices: 8932515--8932685 Score: 261
Period size: 61 Copynumber: 2.8 Consensus size: 60
8932505 CAGCTCATGT
* * *
8932515 GCATCATTACCGACATGTGTACTGCCCACTCCGCACATGCACGGTTGTCCATATCACAACA
1 GCATCATTACCGGCATGTGCACTGCCCACT-CGCACATGCACGGTTGTACATATCACAACA
8932576 GCATCATTACCGGCATGTGCACTGCCCACTCTGCACATGCACGGTTGTACATATCACAACA
1 GCATCATTACCGGCATGTGCACTGCCCACTC-GCACATGCACGGTTGTACATATCACAACA
* * *
8932637 GCATCATTACCGGCATGCGCACTGCCCTCTACGCAGATGCACGGTTGTA
1 GCATCATTACCGGCATGTGCACTGCCCACT-CGCACATGCACGGTTGTA
8932686 TCAACTATAC
Statistics
Matches: 102, Mismatches: 6, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
60 1 0.01
61 100 0.98
62 1 0.01
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (60 bp):
GCATCATTACCGGCATGTGCACTGCCCACTCGCACATGCACGGTTGTACATATCACAACA
Found at i:8937202 original size:61 final size:60
Alignment explanation
Indices: 8937101--8937271 Score: 189
Period size: 61 Copynumber: 2.8 Consensus size: 60
8937091 TGGCTCATGT
* * * * * * *
8937101 GCATCATTACCGACATGTGTACTACCCACTCCACACATGCATGGTTGTACGTATCACAATA
1 GCATCATTACGGA-ATGTGCACTACCCACTCCGCACATGCACGGTTGTACATACCACAACA
* *
8937162 GCATCATTATCGGAATGTGCACTACCCACTCCGCAGATGCACAGTTGTACATACCACAACA
1 GCATCATTA-CGGAATGTGCACTACCCACTCCGCACATGCACGGTTGTACATACCACAACA
* * * * *
8937223 ACATCATTACCGGCATGTGCACTGCCCTCTACGCACATGCACGGTTGTA
1 GCATCATTA-CGGAATGTGCACTACCCACTCCGCACATGCACGGTTGTA
8937272 TCAATTATAC
Statistics
Matches: 92, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
61 89 0.97
62 3 0.03
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (60 bp):
GCATCATTACGGAATGTGCACTACCCACTCCGCACATGCACGGTTGTACATACCACAACA
Found at i:8943921 original size:42 final size:42
Alignment explanation
Indices: 8943861--8943944 Score: 132
Period size: 42 Copynumber: 2.0 Consensus size: 42
8943851 CATCTCATAT
* *
8943861 GCAACGGCTTAAGCGCACTCCTACTCGCACATAGCCGGGTCA
1 GCAACAGCTTAAGCGCACTCCCACTCGCACATAGCCGGGTCA
* *
8943903 GCAACAGCTTATGTGCACTCCCACTCGCACATAGCCGGGTCA
1 GCAACAGCTTAAGCGCACTCCCACTCGCACATAGCCGGGTCA
8943945 ATATCATTAC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.24, C:0.36, G:0.23, T:0.18
Consensus pattern (42 bp):
GCAACAGCTTAAGCGCACTCCCACTCGCACATAGCCGGGTCA
Found at i:8947729 original size:38 final size:39
Alignment explanation
Indices: 8947686--8947791 Score: 135
Period size: 38 Copynumber: 2.7 Consensus size: 39
8947676 ATAGTGCCCG
* * *
8947686 TGTGCACGATGTGGGGGGATGTACATGATGGC-AC-TTA
1 TGTGCACGATGTGGGGGGATGCACATGATGACTACGCTA
* *
8947723 TTGTGCACGATGTGGGGGGATGCACACGATGACTCCGGCTA
1 -TGTGCACGATGTGGGGGGATGCACATGATGACTAC-GCTA
8947764 TGTGCACGATGTGGGGGGATGCACATGA
1 TGTGCACGATGTGGGGGGATGCACATGA
8947792 GCTGGATGTG
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
38 29 0.49
39 1 0.02
40 27 0.46
41 2 0.03
ACGTcount: A:0.21, C:0.17, G:0.39, T:0.24
Consensus pattern (39 bp):
TGTGCACGATGTGGGGGGATGCACATGATGACTACGCTA
Found at i:8954902 original size:19 final size:19
Alignment explanation
Indices: 8954878--8954941 Score: 92
Period size: 19 Copynumber: 3.4 Consensus size: 19
8954868 TTCACAATTG
8954878 AAGAAAACGTAGTTTTTGT
1 AAGAAAACGTAGTTTTTGT
*
8954897 AAGAAAACGTAGGTTTTGT
1 AAGAAAACGTAGTTTTTGT
* *
8954916 CAGAAAATGTAGTTTTTGT
1 AAGAAAACGTAGTTTTTGT
*
8954935 CAGAAAA
1 AAGAAAA
8954942 AGAAAAATGT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 41 1.00
ACGTcount: A:0.39, C:0.06, G:0.22, T:0.33
Consensus pattern (19 bp):
AAGAAAACGTAGTTTTTGT
Found at i:8958516 original size:35 final size:35
Alignment explanation
Indices: 8958474--8958586 Score: 147
Period size: 35 Copynumber: 3.2 Consensus size: 35
8958464 AGTGCATGTG
8958474 ATGATATTAAAGTGTGCGAGTAGGGAGTGCACACA
1 ATGATATTAAAGTGTGCGAGTAGGGAGTGCACACA
* ** *
8958509 ATTATATTGGAGTGTGCGAGTAGGGAGTGCACACG
1 ATGATATTAAAGTGTGCGAGTAGGGAGTGCACACA
* **
8958544 ATGATA-TAGAAATGTGCGAGTAGGGAGTGCACATG
1 ATGATATTA-AAGTGTGCGAGTAGGGAGTGCACACA
8958579 ATGATATT
1 ATGATATT
8958587 GCCTTGTATT
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
34 1 0.01
35 65 0.97
36 1 0.01
ACGTcount: A:0.32, C:0.10, G:0.33, T:0.26
Consensus pattern (35 bp):
ATGATATTAAAGTGTGCGAGTAGGGAGTGCACACA
Found at i:8966704 original size:43 final size:43
Alignment explanation
Indices: 8966625--8966706 Score: 110
Period size: 43 Copynumber: 1.9 Consensus size: 43
8966615 TTGACTCAAC
* * **
8966625 TATGTGCGAGTAGGGAGTGTGCATAAGTCGAAGATGACCTGGT
1 TATGTGCAAGTAGGGAGTGCGCATAACCCGAAGATGACCTGGT
**
8966668 TATGTGCAAGTAGGGAGTGCGCATAACCCGGTGATGACC
1 TATGTGCAAGTAGGGAGTGCGCATAACCCGAAGATGACC
8966707 CAGCCAGTGC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.26, C:0.16, G:0.35, T:0.23
Consensus pattern (43 bp):
TATGTGCAAGTAGGGAGTGCGCATAACCCGAAGATGACCTGGT
Found at i:8967193 original size:39 final size:39
Alignment explanation
Indices: 8967129--8967214 Score: 127
Period size: 39 Copynumber: 2.2 Consensus size: 39
8967119 ATTCTCGCTG
* *
8967129 CAGCGAGAAACTTTATGTTTTTGGGTTACAATTTCACTA
1 CAGCGAGAAACTTTATGATTCTGGGTTACAATTTCACTA
* *
8967168 CAGCTAGAAACTTTATGATTCTGGGTTACAATTTCCCTA
1 CAGCGAGAAACTTTATGATTCTGGGTTACAATTTCACTA
*
8967207 CAACGAGA
1 CAGCGAGA
8967215 TTCAATCTCG
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (39 bp):
CAGCGAGAAACTTTATGATTCTGGGTTACAATTTCACTA
Found at i:8973491 original size:230 final size:225
Alignment explanation
Indices: 8972919--8973995 Score: 799
Period size: 230 Copynumber: 4.7 Consensus size: 225
8972909 AACAACCATC
* * * * * * *
8972919 ATTGGATGTTTGCATTAGGAGACGTGAAGTGGATGCTATCCATTGAGAAAGAAAGAGCATTTTAA
1 ATTGGATGTTTGCAAT-GGAAACGTGAAGTAGATGCTATCCGTTGACAAGGAAAAAGCATTTTAA
* * * *
8972984 GTTTATCATGCCTTCTAAAGCTTGAAATGAGTTATCAATGAATAATTTTTATTTTGATAACATTT
65 GTTTATCATGCCTTCGAAAGCTTGAAATGATTTATCAATGAATAATTATCATTTTGATAACATTT
* *** * * * * **
8973049 TATCATCAACATTGCAATATATAATTCTTTTATAATCTTATAATGATTATAAATTGAAAATAAAT
130 TATCATCAATATTATGACATATAATTC-ATTATAA-CCTATAA--ATGAT--A-T-AAAAT--CG
* * ** * * ** * * *
8973114 AAAAAAATCGACAACTTTGTCATTCTTGGTTACTACTTATTAGA
185 AAAAAAATTG--AA-GTTGTTGTTCTTTGATAAAACCTATCATA
** * * * * *
8973158 ATTGTG-TGTTTGCTTTGTAAAACGTGTAA-TCGATGGTATCCATTAACAAGGAAAGAA-CATTT
1 ATTG-GATGTTTGCAATG-GAAACGTG-AAGTAGATGCTATCCGTTGACAAGGAAA-AAGCATTT
* * * *
8973220 TAAGTTTGT-ATTGCCTTCGAAAGCTTGAAATGATTTATCAATGAATAGTTATCATTCTAATAAC
62 TAAGTTTATCA-TGCCTTCGAAAGCTTGAAATGATTTATCAATGAATAATTATCATTTTGATAAC
* * * *
8973284 ATTTTATCATCAATATTATGAGATATCATACATTACAACCTAATAAATGATTATAAAAT-GAAAA
126 ATTTTATCATCAATATTATGACATATAATTCATTATAACCT-ATAAATGA-TATAAAATCGAAAA
*
8973348 AAATTGCAAGCATTATAT-TTCTTTGATAAAACCTATCATA
189 AAATTG-AAG--TTGT-TGTTCTTTGATAAAACCTATCATA
* * * * * *
8973388 ATTGGATATCTGCAATGCGAAACGTGAAGTCGATGCGATCCGTTGATAAAGAAAAAGCATTTTAA
1 ATTGGATGTTTGCAATG-GAAACGTGAAGTAGATGCTATCCGTTGACAAGGAAAAAGCATTTTAA
* * *
8973453 TTTTATCATGCCTTCGAAAGCTTGAAATGATTTATCAATGAATAATTATCACTTTGGTAACATTT
65 GTTTATCATGCCTTCGAAAGCTTGAAATGATTTATCAATGAATAATTATCATTTTGATAACATTT
* * *
8973518 TA-CGATGAATATTGTGACATATGATTCATTGATAATCCTATAAATGACTAT-AAATCG---AAA
130 TATC-ATCAATATTATGACATATAATTCATT-ATAA-CCTATAAATGA-TATAAAATCGAAAAAA
* * *
8973578 CTT----TTGTTGTTC-TTGGTCAAAACTTATCATA
191 ATTGAAGTTGTTGTTCTTTGAT-AAAACCTATCATA
* * * * *
8973609 ATTGGTTGTTTGCATTGGGAAACGTGAGGTAGATGCTATCCATTGACAAGGAGAGAA-CATTTTA
1 ATTGGATGTTTGCAAT-GGAAACGTGAAGTAGATGCTATCCGTTGACAAGGA-AAAAGCATTTTA
* *
8973673 AGTGTATCATGCCTTC-AAAGGGTTGAAATGATTTATCAATGAATAATTATCATTTTGATAACAT
64 AGTTTATCATGCCTTCGAAA-GCTTGAAATGATTTATCAATGAATAATTATCATTTTGATAACAT
* * * ** * * *
8973737 TTTATCTTAAACATTACAATATATAATTCATTTATAATCTTATAAGTGA-ATGAAAATCGAAAAT
128 TTTATCATCAATATTATGACATATAATTCA-TTATAA-CCTATAAATGATAT-AAAATCGAAAA-
* * * * *
8973801 AAA-TGAAAGTTTTGTTGTTCTTGGTTAAAACCTTTTAAA
189 AAATTG-AAG--TTGTTGTTCTTTGATAAAACCTATCATA
* * *
8973840 ATTGGATGTTTGCAATGGAAACGTGAAGTGGATGCTATCCGTTGACAAGGAAAGAGCATATTAAG
1 ATTGGATGTTTGCAATGGAAACGTGAAGTAGATGCTATCCGTTGACAAGGAAAAAGCATTTTAAG
* * * * *
8973905 TTGATCATGCCTTTGAAAGCTTTAAAAGATTTATCAATGAATAATTATCATTTTGATAACAATTT
66 TTTATCATGCCTTCGAAAGCTTGAAATGATTTATCAATGAATAATTATCATTTTGATAACATTTT
* * *
8973970 CTCATCAATATTACGATATATAATTC
131 ATCATCAATATTATGACATATAATTC
8973996 TTTTATATTT
Statistics
Matches: 674, Mismatches: 123, Indels: 91
0.76 0.14 0.10
Matches are distributed among these distances:
219 2 0.00
220 8 0.01
221 160 0.24
222 7 0.01
224 2 0.00
225 2 0.00
228 5 0.01
229 11 0.02
230 270 0.40
231 51 0.08
232 6 0.01
233 5 0.01
234 1 0.00
235 1 0.00
236 3 0.00
237 3 0.00
238 11 0.02
239 122 0.18
240 4 0.01
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.37
Consensus pattern (225 bp):
ATTGGATGTTTGCAATGGAAACGTGAAGTAGATGCTATCCGTTGACAAGGAAAAAGCATTTTAAG
TTTATCATGCCTTCGAAAGCTTGAAATGATTTATCAATGAATAATTATCATTTTGATAACATTTT
ATCATCAATATTATGACATATAATTCATTATAACCTATAAATGATATAAAATCGAAAAAAATTGA
AGTTGTTGTTCTTTGATAAAACCTATCATA
Found at i:8973701 original size:221 final size:222
Alignment explanation
Indices: 8973375--8973995 Score: 628
Period size: 221 Copynumber: 2.8 Consensus size: 222
8973365 TTTCTTTGAT
* * * * * * * *
8973375 AAAACCTATCATAATTGGATATCTGCAATGCGAAACGTGAAGTCGATGCGATCCGTTGATAAAGA
1 AAAACTTATCATAATTGGATGTTTGCAATGGGAAACGTGAAGTAGATGCTATCCGTTGACAAGGA
* * *
8973440 AAAAGCATTTTAATTTTATCATGCCTTCGAAAGCTTGAAATGATTTATCAATGAATAATTATCAC
66 AGAA-CATTTTAA-GTTATCATGCCTTC-AAAGCTTGAAATGATTTATCAATGAATAATTATCAT
* * * *** *
8973505 TTTGGTAACATTTTA-CGATGAATATTGTGACATATGATTCATTGATAATCCTAT-A-AATG-A-
128 TTTGATAACATTTTATC-ATAAACATTACAACATATAATTCATTGATAATCCTATAAGAATGAAT
*
8973565 C-TATAAATCGAAACTTTTGTTGTTCTTGGTC
192 CAAATAAAT-GAAACTTTTGTTGTTCTTGGTC
* * * *
8973596 AAAACTTATCATAATTGGTTGTTTGCATTGGGAAACGTGAGGTAGATGCTATCCATTGACAAGGA
1 AAAACTTATCATAATTGGATGTTTGCAATGGGAAACGTGAAGTAGATGCTATCCGTTGACAAGGA
*
8973661 GAGAACATTTTAAGTGTATCATGCCTTCAAAGGGTTGAAATGATTTATCAATGAATAATTATCAT
66 -AGAACATTTTAAGT-TATCATGCCTTCAAA-GCTTGAAATGATTTATCAATGAATAATTATCAT
* * * *
8973726 TTTGATAACATTTTATCTTAAACATTACAATATATAATTCATTTATAATCTTATAAGTGAATGAA
128 TTTGATAACATTTTATCATAAACATTACAACATATAATTCATTGATAATCCTATAA--GAATG--
* *
8973791 AATCGAAAATAAATGAAAGTTTTGTTGTTCTTGGTT
189 AATC--AAATAAATGAAACTTTTGTTGTTCTTGGTC
* * *
8973827 AAAACCTT-TTAAAATTGGATGTTTGCAAT-GGAAACGTGAAGTGGATGCTATCCGTTGACAAGG
1 AAAA-CTTATCATAATTGGATGTTTGCAATGGGAAACGTGAAGTAGATGCTATCCGTTGACAAGG
* * * * *
8973890 AAAGAGCATATTAAGTTGATCATGCCTTTGAAAGCTTTAAAAGATTTATCAATGAATAATTATCA
65 -AAGAACATTTTAAGTT-ATCATGCC-TTCAAAGCTTGAAATGATTTATCAATGAATAATTATCA
* * * * * *
8973955 TTTTGATAACAATTTCTCATCAATATTACGATATATAATTC
127 TTTTGATAACATTTTATCATAAACATTACAACATATAATTC
8973996 TTTTATATTT
Statistics
Matches: 332, Mismatches: 49, Indels: 29
0.81 0.12 0.07
Matches are distributed among these distances:
220 4 0.01
221 145 0.44
222 5 0.02
225 4 0.01
228 1 0.00
229 2 0.01
230 115 0.35
231 47 0.14
232 9 0.03
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (222 bp):
AAAACTTATCATAATTGGATGTTTGCAATGGGAAACGTGAAGTAGATGCTATCCGTTGACAAGGA
AGAACATTTTAAGTTATCATGCCTTCAAAGCTTGAAATGATTTATCAATGAATAATTATCATTTT
GATAACATTTTATCATAAACATTACAACATATAATTCATTGATAATCCTATAAGAATGAATCAAA
TAAATGAAACTTTTGTTGTTCTTGGTC
Found at i:8974014 original size:451 final size:455
Alignment explanation
Indices: 8973189--8976613 Score: 1821
Period size: 484 Copynumber: 7.2 Consensus size: 455
8973179 ACGTGTAATC
* *
8973189 GATGGTATCCATTAACAAGGAAAGA-ACATTTTAAGTTTGTAT--TGCCTTCGAAAGCTTGAAAT
1 GATGCTATCCATTGACAAGGAAAGATACATTTTAAG-TTGTATCATGCCTTCGAAAGCTTGAAAT
* * * * * * * *
8973251 GATTTATCAATGAATAGTTATCATTCTAATAACATTTTATCATCAATATTATGAGATATCATACA
65 GATTTATCAATGAATAATTATCATTTTGATAACATTTTATCATCAACATTATAATATATAATTCA
* * * * * * * *
8973316 -TTACAACCTAATAAATGATTAT-AAAATGAAAA-AAATTGCAAGCATTATAT-TTCTTTGATAA
130 TTTATAATCTTATAAATGA--ATGAAAATGAAAATAAATTGAAAGCTTTGT-TGTTCTTGGTTAA
* * * * * * * *
8973377 AACCTATCATAATTGGATATCTGCAATGCGAAACGTGAAGTCGATGCGATCCGTTGATAAAGAAA
192 AACCTATTAAAATTGGATATTTGCAATGGGAAACGTGAAGTGGATGCTATCCATTGACAAAGAAA
* * * * *
8973442 AAGCATTTTAATTTTATCATGCCTTCGAAAGCTTGAAATGATTTATCAATGAATAATTATCACTT
257 GAGCATATTAAGTTTATCATGCCTTCGAAAGCTTGAAAAGATTTATCAATGAATAATTATCATTT
* * ** * * * * *
8973507 TGGTAACATTT-TACGATGAATATTGTGACATATGATTCATTGATAATCCTATAAATGACTATAA
322 TGATAACATTTAT-C-ATCAATATTACGATATATAATTCATTTATAATCTTATAAATGATTATAA
* * *
8973571 ATCGAAACTT-TT-GTTGTTCTTGGTCAAAACTTATCATAATTGGTTGTTTGCATTGGGAAACGT
385 ATCGAAAATTATTAGTTGTTCTTGGTCAAAACTTATCATAATTGGATGTTTGCATTGGGAAACAT
* *
8973634 GAGGTA
450 GAAGTG
* *
8973640 GATGCTATCCATTGACAAGGAGAGA-ACATTTTAAG-TGTATCATGCCTTC-AAAGGGTTGAAAT
1 GATGCTATCCATTGACAAGGAAAGATACATTTTAAGTTGTATCATGCCTTCGAAA-GCTTGAAAT
* * *
8973702 GATTTATCAATGAATAATTATCATTTTGATAACATTTTATCTTAAACATTACAATATATAATTCA
65 GATTTATCAATGAATAATTATCATTTTGATAACATTTTATCATCAACATTATAATATATAATTCA
* *
8973767 TTTATAATCTTATAAGTGAATGAAAATCGAAAATAAA-TGAAAGTTTTGTTGTTCTTGGTTAAAA
130 TTTATAATCTTATAAATGAATGAAAAT-GAAAATAAATTGAAAGCTTTGTTGTTCTTGGTTAAAA
* * * *
8973831 CCTTTTAAAATTGGATGTTTGCAAT-GGAAACGTGAAGTGGATGCTATCCGTTGACAAGGAAAGA
194 CCTATTAAAATTGGATATTTGCAATGGGAAACGTGAAGTGGATGCTATCCATTGACAAAGAAAGA
* * *
8973895 GCATATTAAGTTGATCATGCCTTTGAAAGCTTTAAAAGATTTATCAATGAATAATTATCATTTTG
259 GCATATTAAGTTTATCATGCCTTCGAAAGCTTGAAAAGATTTATCAATGAATAATTATCATTTTG
* *
8973960 ATAACAATTTCTCATCAATATTACGATATATAATTCTTTTATATTTTGATAAATGATTATAAATT
324 ATAAC-ATTTATCATCAATATTACGATATATAATTC------A-TTT-AT-AAT-CTTATAAA-T
* * * *
8974025 GGAAATAAATAGAAAATAAATCAAAAATAAATCCAAAGCTTTGTTGTTCTTGATGAAAACTTATC
377 -G--AT---T-----ATAAATCGAAAAT---T----A--TTAGTTGTTCTTGGTCAAAACTTATC
* * **
8974090 CTAATTGGATGTTTGCCTTAAGAGAA-ATGAAGTG
422 ATAATTGGATGTTTGCATTGGGA-AACATGAAGTG
* * *
8974124 GATGCTATCCATTGACAAGGGAAGAGA-ATTTT-AGTT-TATTATGCCTTCGAAAGCTTGAAATG
1 GATGCTATCCATTGACAAGGAAAGATACATTTTAAGTTGTATCATGCCTTCGAAAGCTTGAAATG
* * * * *
8974186 ATTTATCAATGAATAATTATCAATTTGATAACATTTTATCATTAATATTATAATATATAAGTAAT
66 ATTTATCAATGAATAATTATCATTTTGATAACATTTTATCATCAACATTATAATATATAATTCAT
* * * *
8974251 TTATAATCTTATAAATGATTAT-AGATTAAAAATAAATT-AAAACTTTTGTTGTTCTTGGTTAAA
131 TTATAATCTTATAAATGA--ATGAAAATGAAAATAAATTGAAAGC-TTTGTTGTTCTTGGTTAAA
* * * * * *
8974314 ACCTA-TAGCAATTGGCTATTTGCATTGGGGAATC-TGAAGTGGATGCTATCCATCGGCAACA-A
193 ACCTATTA-AAATTGGATATTTGCAAT-GGGAAACGTGAAGTGGATGCTATCCATTGACAA-AGA
* ** * *
8974376 AAGAGGAT-TTATTTTTATCATGCCTTCAAAAGCTTGAAAAGATTTATCAATGAATAGTTATCAT
255 AAGAGCATATTAAGTTTATCATGCCTTCGAAAGCTTGAAAAGATTTATCAATGAATAATTATCAT
*
8974440 TTTGATAACATTTTATCATCAATATTATGAT-TATAATTCATTTATAATCTTATAAATGATTATA
320 TTTGATAACA-TTTATCATCAATATTACGATATATAATTCATTTATAATCTTATAAATGATTATA
* * * * *
8974504 AATCAAAAATAAATTGAAAGCTTCATTGTTCTTAG-CTAAAACCTATCATAATTGGATATTTGCA
384 AATCGAAAAT-TATT---AG-----TTGTTCTTGGTC-AAAACTTATCATAATTGGATGTTTGCA
8974568 TTGGGAAACATGAAGTG
439 TTGGGAAACATGAAGTG
* *
8974585 GATGCTATCCACTGACAAGGAAAAAACATTTTTACTTTATCTTACCTTCGAAGGCTTTAGTTTAT
1 GATGCTATCCATTGACAAGG---AAAGA----TAC---A--TT---TT--AA-G--TT-G--TAT
* * * * *
8974650 CCTACCTTCGAAGGCTAGAAATGATTTATCAATGAATAATTCTCATTTTGATAACATTTTATCAT
43 CATGCCTTCGAAAGCTTGAAATGATTTATCAATGAATAATTATCATTTTGATAACATTTTATCAT
* * *
8974715 CAACATTATGATATATAATTCATTTATAATCTTACAAATTATTATAAATAGAAAATGAGTAAA-A
108 CAACATTATAATATATAATTCATTTATAATCTT----A-TA-AATGAAT-GAAAATGA--AAATA
* * *
8974779 AATAAATGAAAAGCTTTGTTGTTCTTGGTTAAAACCTATTAGAATTGGATGTTTG-AATCGGTAA
164 AAT---TG-AAAGCTTTGTTGTTCTTGGTTAAAACCTATTAAAATTGGATATTTGCAAT-GGGAA
* * * * *
8974843 ATGTGACA-TGGATGTTTTCCATTGACAAAGAAAGAGCATATTAAGTTTAACATGCCTTTGAAAG
224 ACGTGA-AGTGGATGCTATCCATTGACAAAGAAAGAGCATATTAAGTTTATCATGCCTTCGAAAG
* * *
8974907 CTTGAAATGATTTATTAATGAATAATTATTC-TTTTGATAACATTGTATCACCAATATTACGATA
288 CTTGAAAAGATTTATCAATGAATAATTA-TCATTTTGATAACATT-TATCATCAATATTACGATA
* * * * ** * ****
8974971 TATAACTC-TTTAATAATGTAATAAATTATTATAAATTAAAAATAAATAAAAAACAAATAAAAAA
351 TATAATTCATTT-ATAATCTTATAAATGATTATAAATCGAAAAT---T---------ATTAGTTG
* ** * * * * *
8975035 AT-TTAATCAAAAGCTTTATTGTTCATGGATAAAATGTATCCTAATTGGATGTTTGCTTTGGGAG
403 TTCTTGGTCAAAA-C-TTA----TC----AT-AATTGGA---T-GTT---TG----CATTGGGAA
* *
8975099 ATATAAAGTG
446 ACATGAAGTG
* * * * ** * * *
8975109 GATGCTATCCATTGACAAGAAAAGAGA-ATTTTCAGTT-TATCATGCTTTCGAAAGCAAGCAGTA
1 GATGCTATCCATTGACAAGGAAAGATACATTTTAAGTTGTATCATGCCTTCGAAAGCTTGAAATG
* * * * * *
8975172 ATTTATCGATGAATAATTATCA-TTTGATAACATTTTATCATCAATAATATCATACATAATTCAA
66 ATTTATCAATGAATAATTATCATTTTGATAACATTTTATCATCAACATTATAATATATAATTCAT
* ** * *
8975236 TTATAATCTTATAAATG-AT-----T----ATAAATTCAAAGCTTCATTGTTCTTGATTAAAACT
131 TTATAATCTTATAAATGAATGAAAATGAAAATAAATTGAAAGCTTTGTTGTTCTTGGTTAAAACC
* ** * * * * * * * * *
8975291 TATCATTATTGAAT-TATTGCATTAGAAAACGTGAAGTTGATGCTATTCATTGACAAGGAAACAA
196 TATTAAAATTGGATAT-TTGCAATGGGAAACGTGAAGTGGATGCTATCCATTGACAAAGAAAGAG
* * * * * *
8975355 TATTTTAA-TCTTATTATGCCTTCGAAAGCTTGAAATGATTTATCAATGAATAATTACCATTTTC
260 CATATTAAGT-TTATCATGCCTTCGAAAGCTTGAAAAGATTTATCAATGAATAATTATCATTTTG
** * * *
8975419 ATAACATTTTATCATCAACCTTATGATATATAATTCATTTATAATCATATGAATGACTATAAATA
324 ATAACA-TTTATCATCAATATTACGATATATAATTCATTTATAATCTTATAAATGA-T-T--AT-
* * * * ** * *
8975484 AAAAATGAATCAAAAATAAATCTAAAGCTTTATTTTTTTTATTAAAAC-TATCATAATTTGATGT
383 ----A--AATCGAAAAT-TAT-T--AG---T-TGTTCTTGGTCAAAACTTATCATAATTGGATGT
* *
8975548 TTGTATTGGGACACATGAAGTG
434 TTGCATTGGGAAACATGAAGTG
** * *
8975570 GACACTATCCATTGACAACGAAA-A-AGCATTTTAAGTT-TATCATGTCTTCG-AAGCCTTGAAA
1 GATGCTATCCATTGACAAGGAAAGATA-CATTTTAAGTTGTATCATGCCTTCGAAAG-CTTGAAA
* * ** * * ** *
8975631 TGATGTATCAATGAATAATTATCATTTTTATAACATTTTATTGTTAATATTACGATATAGAATTC
64 TGATTTATCAATGAATAATTATCATTTTGATAACATTTTATCATCAACATTATAATATATAATTC
* *
8975696 ATTTGTAATCTTATAAATGATTATAAATTGAAAACATAGCCAAAATAAATTGAAGGCTTTGTTGT
129 ATTTATAATCTTATAAATG------AA-TG-AAA-AT-G--AAAATAAATTGAAAGCTTTGTTGT
* * * * * * *
8975761 TCTTGGTTCAAACCTATCT-TAATTGGATGTTTGCATTGGGAAATGTGAAATGGATGCTATCCAC
182 TCTTGGTTAAAACCTAT-TAAAATTGGATATTTGCAATGGGAAACGTGAAGTGGATGCTATCCAT
* * * * * * *
8975825 TAACAAGGAAAGAGCATATTAATTTTATCATGCCTTCAAAAGCTTGGAATGATATATCAATGAAT
246 TGACAAAGAAAGAGCATATTAAGTTTATCATGCCTTCGAAAGCTTGAAAAGATTTATCAATGAAT
* * * * * *
8975890 AATTATCATTTTGATAACATTTTGTCACCAATATTATGAAATATAATTCTTTTATAATCTAATAA
311 AATTATCATTTTGATAACA-TTTATCATCAATATTACGATATATAATTCATTTATAATCTTATAA
** * * * * *
8975955 ACAATTATAAATCAAAAATAAAATGAAAGCTTTGTTGTTCTTAGTTAAAACTTA-AACTAATTGG
375 ATGATTATAAATCGAAAAT----T---A--TTAGTTGTTCTTGGTCAAAACTTATCA-TAATTGG
8976019 ATGTTTGC-TATGGGAAACATGAAGTG
430 ATGTTTGCAT-TGGGAAACATGAAGTG
* * ** * * * * *
8976045 GAAGCTATCTATTGACAAGGAAAG-GGCACTGTAAGTT-TATCTTGCCTTCAAAAGCTTCAAATG
1 GATGCTATCCATTGACAAGGAAAGATACATTTTAAGTTGTATCATGCCTTCGAAAGCTTGAAATG
* * * * * *
8976108 ATTTATCAATGAGTAATTCTCA-TTTGAATTAA-ATTTTATCATCGATATTATGATTTATAATTC
66 ATTTATCAATGAATAATTATCATTTTG-A-TAACATTTTATCATCAACATTATAATATATAATTC
* * ** *
8976171 ATTTATAATCTTATGAATGATTATAAATAAAAAATAAATCAAAAATAAATCAAAGACTTTGTTGT
129 ATTTATAATCTTATAAATGA--AT-GA-AAATGA-AAAT---AAAT---TGAAAG-CTTTGTTGT
* * * * * * * *
8976236 TGTTGGTTAAAACCTATCATAATTGGCTGTTTGCATTGGGAAACATGAAGTGGATGTTATCCATT
182 TCTTGGTTAAAACCTATTAAAATTGGATATTTGCAATGGGAAACGTGAAGTGGATGCTATCCATT
* * * * * * * *
8976301 GACAAGGAAAAAGCAT-TTCAAGCTTATCGTGTCTTCG-AAGCCTTGAAATGTTTTGTCAATGAA
247 GACAAAGAAAGAGCATATT-AAGTTTATCATGCCTTCGAAAG-CTTGAAAAGATTTATCAATGAA
* ** * *
8976364 TAATTATCATTTTAATAACATTTTAAGATCAATATTATGATAAATAATTCATTTATAATCTTATA
310 TAATTATCATTTTGATAACA-TTTATCATCAATATTACGATATATAATTCATTTATAATCTTATA
** *
8976429 AATGATTATAAATAAAAATTAAATTAAAAATAAATCAAAAGTTTTGTTGTTCTTGGTTAAAACTT
374 AATGATTATAAAT--CGA--AAATT----AT---T----A-----GTTGTTCTTGGTCAAAACTT
* * ** **
8976494 ATCGTGATTGGATGTTTGCATTATGAAATGTGAAGTG
419 ATCATAATTGGATGTTTGCATTGGGAAACATGAAGTG
* * * * *
8976531 GATGCTATCTATTGACAAGGAAAGA-GCATTTTAAGTT-TATCATGCCTTTGAAAGCCTGGAATG
1 GATGCTATCCATTGACAAGGAAAGATACATTTTAAGTTGTATCATGCCTTCGAAAGCTTGAAATG
8976594 ATTTATCAATGAATAATTAT
66 ATTTATCAATGAATAATTAT
8976614 TGTAACACCC
Statistics
Matches: 2303, Mismatches: 414, Indels: 479
0.72 0.13 0.15
Matches are distributed among these distances:
449 5 0.00
450 5 0.00
451 220 0.10
452 63 0.03
453 6 0.00
455 1 0.00
456 1 0.00
457 1 0.00
458 2 0.00
459 4 0.00
460 9 0.00
461 158 0.07
462 49 0.02
463 1 0.00
464 3 0.00
465 3 0.00
466 1 0.00
467 1 0.00
468 8 0.00
469 5 0.00
470 4 0.00
471 8 0.00
472 6 0.00
473 30 0.01
474 32 0.01
475 322 0.14
476 172 0.07
477 18 0.01
478 2 0.00
479 7 0.00
480 10 0.00
481 4 0.00
482 1 0.00
483 126 0.05
484 376 0.16
485 40 0.02
486 122 0.05
487 99 0.04
491 5 0.00
492 4 0.00
493 9 0.00
494 5 0.00
495 3 0.00
497 8 0.00
498 111 0.05
499 119 0.05
500 36 0.02
502 8 0.00
503 5 0.00
504 2 0.00
505 1 0.00
506 1 0.00
508 5 0.00
511 4 0.00
512 2 0.00
513 6 0.00
516 1 0.00
517 4 0.00
520 2 0.00
521 4 0.00
524 33 0.01
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.37
Consensus pattern (455 bp):
GATGCTATCCATTGACAAGGAAAGATACATTTTAAGTTGTATCATGCCTTCGAAAGCTTGAAATG
ATTTATCAATGAATAATTATCATTTTGATAACATTTTATCATCAACATTATAATATATAATTCAT
TTATAATCTTATAAATGAATGAAAATGAAAATAAATTGAAAGCTTTGTTGTTCTTGGTTAAAACC
TATTAAAATTGGATATTTGCAATGGGAAACGTGAAGTGGATGCTATCCATTGACAAAGAAAGAGC
ATATTAAGTTTATCATGCCTTCGAAAGCTTGAAAAGATTTATCAATGAATAATTATCATTTTGAT
AACATTTATCATCAATATTACGATATATAATTCATTTATAATCTTATAAATGATTATAAATCGAA
AATTATTAGTTGTTCTTGGTCAAAACTTATCATAATTGGATGTTTGCATTGGGAAACATGAAGTG
Found at i:8974033 original size:230 final size:229
Alignment explanation
Indices: 8972919--8976613 Score: 1808
Period size: 243 Copynumber: 15.5 Consensus size: 229
8972909 AACAACCATC
* * * *
8972919 ATTGGATGTTTGCATTAGGAGACGTGAAGTGGATGCTATCCATTGAGAAAGAAAGAGCATTTTAA
1 ATTGGATGTTTGCATTGGGAAAC-TGAAGTGGATGCTATCCATTGACAAGGAAAGAGCA-TTTAA
* * * * * *
8972984 GTTTATCATGCCTTCTAAAGCTTGAAATGAGTTATCAATGAATAATTTTTATTTTGATAACATTT
64 GTTGATCATGCCTTCGAAAGCTTGAAAAGATTTATCAATGAATAATTATCATTTTGATAACATTT
* * * *
8973049 TATCATCAACATTGCAATATATAATTCTTTTATAATCTTAT-AATGATTATAAATTGAAAATAAA
129 TATCATCAATATTACAATATATAATTCATTTATAATCTTATAAATGATTATAAA-T--CAA-AAA
* ** ** * *
8973113 TAAAAAAATCGACAA-CTTTGTCATTCTTGGTTACTA-CTTATTAGA
190 T----AAAT-GA-AAGTTTTGTTGTTCTTGGTTAAAACCTT-TCATA
* ** * * * *
8973158 ATTGTG-TGTTTGCTTTGTAAAACGTGTAA-TCGATGGTATCCATTAACAAGGAAAGAACATTTT
1 ATTG-GATGTTTGCATTGGGAAAC-TG-AAGTGGATGCTATCCATTGACAAGGAAAGAGCA-TTT
* * * *
8973221 AAGTTTG-T-ATTGCCTTCGAAAGCTTGAAATGATTTATCAATGAATAGTTATCATTCTAATAAC
62 AAG-TTGATCA-TGCCTTCGAAAGCTTGAAAAGATTTATCAATGAATAATTATCATTTTGATAAC
** * * * * * * *
8973284 ATTTTATCATCAATATTATGAGATATCATACA-TTACAACCTAATAAATGATTATAAAATGAAAA
125 ATTTTATCATCAATATTACAATATATAATTCATTTATAATCTTATAAATGATTAT-AAATCAAAA
* * ** * * * *
8973348 A-AATTGCAAGCATTATAT-TTCTTTGATAAAACCTATCATA
189 ATAAATGAAAGTTTTGT-TGTTCTTGGTTAAAACCTTTCATA
* * * * * * * * * *
8973388 ATTGGATATCTGCAATGCGAAACGTGAAGTCGATGCGATCCGTTGATAAAGAAAAAGCATTTTAA
1 ATTGGATGTTTGCATTGGGAAAC-TGAAGTGGATGCTATCCATTGACAAGGAAAGAGCA-TTTAA
* * * * *
8973453 TTTTATCATGCCTTCGAAAGCTTGAAATGATTTATCAATGAATAATTATCACTTTGGTAACATTT
64 GTTGATCATGCCTTCGAAAGCTTGAAAAGATTTATCAATGAATAATTATCATTTTGATAACATTT
* *** * * * * *
8973518 TA-CGATGAATATTGTGACATATGATTCATTGATAATCCTATAAATGACTATAAATC--------
129 TATC-ATCAATATTACAATATATAATTCATTTATAATCTTATAAATGATTATAAATCAAAAATAA
* *
8973574 --GAAACTTTTGTTGTTCTTGGTCAAAA-CTTATCATA
193 ATGAAAGTTTTGTTGTTCTTGGTTAAAACCTT-TCATA
* * * * *
8973609 ATTGGTTGTTTGCATTGGGAAACGTGAGGTAGATGCTATCCATTGACAAGGAGAGAACATTTTAA
1 ATTGGATGTTTGCATTGGGAAAC-TGAAGTGGATGCTATCCATTGACAAGGAAAGAGCA-TTTAA
* *
8973674 G-TGTATCATGCCTTC-AAAGGGTTGAAATGATTTATCAATGAATAATTATCATTTTGATAACAT
64 GTTG-ATCATGCCTTCGAAA-GCTTGAAAAGATTTATCAATGAATAATTATCATTTTGATAACAT
* * * * * *
8973737 TTTATCTTAAACATTACAATATATAATTCATTTATAATCTTATAAGTGAATGA-AAATCGAAAAT
127 TTTATCATCAATATTACAATATATAATTCATTTATAATCTTATAAATG-ATTATAAATCAAAAAT
* *
8973801 AAATGAAAGTTTTGTTGTTCTTGGTTAAAACCTTTTAAA
191 AAATGAAAGTTTTGTTGTTCTTGGTTAAAACCTTTCATA
* *
8973840 ATTGGATGTTTGCAAT-GGAAACGTGAAGTGGATGCTATCCGTTGACAAGGAAAGAGCATATTAA
1 ATTGGATGTTTGCATTGGGAAAC-TGAAGTGGATGCTATCCATTGACAAGGAAAGAGCAT-TTAA
* * *
8973904 GTTGATCATGCCTTTGAAAGCTTTAAAAGATTTATCAATGAATAATTATCATTTTGATAACAATT
64 GTTGATCATGCCTTCGAAAGCTTGAAAAGATTTATCAATGAATAATTATCATTTTGATAACATTT
* * *
8973969 TCTCATCAATATTACGATATATAATTCTTTTATATTTTGATAAATGATTATAAATTGGAAATAAA
129 TATCATCAATATTACAATATATAATTC------A-TTT-AT-AAT-CTTATAAA-T-G--AT---
* * * * *
8974034 TAGAAAATAAATCAAAAATAAATCCAAAGCTTTGTTGTTCTTGATGAAAA-CTTATCCTA
177 T-----ATAAATCAAAAATAAAT-GAAAGTTTTGTTGTTCTTGGTTAAAACCTT-TCATA
* * * * *
8974093 ATTGGATGTTTGCCTTAAGAGAAA-TGAAGTGGATGCTATCCATTGACAAGGGAAGAGAATTTTA
1 ATTGGATGTTTGCATT--GGGAAACTGAAGTGGATGCTATCCATTGACAAGGAAAGAGCATTTAA
* * * *
8974157 GTTTATTATGCCTTCGAAAGCTTGAAATGATTTATCAATGAATAATTATCAATTTGATAACATTT
64 GTTGATCATGCCTTCGAAAGCTTGAAAAGATTTATCAATGAATAATTATCATTTTGATAACATTT
* * * * * *
8974222 TATCATTAATATTATAATATATAAGTAATTTATAATCTTATAAATGATTATAGATTAAAAATAAA
129 TATCATCAATATTACAATATATAATTCATTTATAATCTTATAAATGATTATAAATCAAAAATAAA
* * * *
8974287 TTAAAACTTTTGTTGTTCTTGGTTAAAACCTAT-AGCA
194 -TGAAAGTTTTGTTGTTCTTGGTTAAAACCTTTCA-TA
* * * * * ** * **
8974324 ATTGGCTATTTGCATTGGGGAATCTGAAGTGGATGCTATCCATCGGCAACAAAAGAGGATTTATT
1 ATTGGATGTTTGCATT-GGGAAACTGAAGTGGATGCTATCCATTGACAAGGAAAGAGCATTTAAG
* * *
8974389 TTTATCATGCCTTCAAAAGCTTGAAAAGATTTATCAATGAATAGTTATCATTTTGATAACATTTT
65 TTGATCATGCCTTCGAAAGCTTGAAAAGATTTATCAATGAATAATTATCATTTTGATAACATTTT
**
8974454 ATCATCAATATTATGAT-TATAATTCATTTATAATCTTATAAATGATTATAAATCAAAAATAAAT
130 ATCATCAATATTACAATATATAATTCATTTATAATCTTATAAATGATTATAAATCAAAAATAAA-
* ** * * *
8974518 TGAAAGCTTCATTGTTCTTAGCTAAAACCTATCATA
194 TGAAAGTTTTGTTGTTCTTGGTTAAAACCTTTCATA
* * * * *
8974554 ATTGGATATTTGCATTGGGAAACATGAAGTGGATGCTATCCACTGACAAGGAAAAAACATTTTTA
1 ATTGGATGTTTGCATTGGGAAAC-TGAAGTGGATGCTATCCATTGACAAGGAAAGAGCA-TTTAA
* * * * * * **** * * *
8974619 CTTTATCTTACCTTCGAAGGCTTTAGTTTATCCTACCTTCGAAGGCTAGAAATGATTTATCA--A
64 GTTGATCATGCCTTCGAAAGCTTGAAAAGAT-TTA---TC-AA---T-G-AAT-AATTATCATTT
* * * * * *
8974682 TGAATAATTCTCATTTTGAT-AAC-ATTTTATC-ATCA-ACATTATGATATATAATTCATT-TAT
118 TG-ATAA----CATTTT-ATCATCAATATTA-CAAT-ATATAAT-TCATTTATAA-TC-TTATA-
* * * *
8974742 AAT-CTTACAAATTATTATAAATAGAAAATGAGTAAAAAATAAATGAAAAGCTTTGTTGTTCTTG
171 AATGATT--ATA----------------A--A-TCAAAAATAAATG-AAAGTTTTGTTGTTCTTG
*
8974806 GTTAAAACCTATT-AGA
214 GTTAAAACCT-TTCATA
* * * * * * *
8974822 ATTGGATGTTTGAATCGGTAAATGTGACA-TGGATGTTTTCCATTGACAAAGAAAGAGCATATTA
1 ATTGGATGTTTGCATTGGGAAA-CTGA-AGTGGATGCTATCCATTGACAAGGAAAGAGCAT-TTA
* * * * *
8974886 AGTTTAACATGCCTTTGAAAGCTTGAAATGATTTATTAATGAATAATTATTC-TTTTGATAACAT
63 AGTTGATCATGCCTTCGAAAGCTTGAAAAGATTTATCAATGAATAATTA-TCATTTTGATAACAT
* * * * * * * *
8974950 TGTATCACCAATATTACGATATATAACTC-TTTAATAATGTAATAAATTATTATAAATTAAAAAT
127 TTTATCATCAATATTACAATATATAATTCATTT-ATAATCTTATAAATGATTATAAATCAAAAAT
* ** ******* ** * *
8975014 AAATAAAAAACAAATAAAAAAAT-TTAATCAAAAGCTTTATTGTTCATGGATAAA
191 AAAT---GAA-AGTTTTGTTGTTCTTGGTTAAAA-C----CT-TTC----AT--A
** * * *
8975068 ATGTATCCTAATTGGATGTTTGCTTTGGGAGATA-TAAAGTGGATGCTATCCATTGACAAGAAAA
1 A--T-T--GGA-T-G---TTTGCATTGGGA-A-ACTGAAGTGGATGCTATCCATTGACAAGGAAA
* * * * ** ** *
8975132 GAGAATTTTCAGTTTATCATGCTTTCGAAAGCAAGCAGTA-ATTTATCGATGAATAATTATCA-T
54 GAGCA-TTTAAGTTGATCATGCCTTCGAAAGCTTG-AAAAGATTTATCAATGAATAATTATCATT
* * *
8975195 TTGATAACATTTTATCATCAATAATATC-ATACATAATTCAATTATAATCTTATAAATGA-T-T-
117 TTGATAACATTTTATCATCAATATTA-CAATATATAATTCATTTATAATCTTATAAATGATTATA
* * ** * *
8975256 -AT---AAAT---TCAAAGCTTCATTGTTCTTGATTAAAA-CTTATCATT
181 AATCAAAAATAAATGAAAGTTTTGTTGTTCTTGGTTAAAACCTT-TCATA
* * * * * * **
8975298 ATTGAAT-TATTGCATTAGAAAACGTGAAGTTGATGCTATTCATTGACAAGGAAACAATATTTTA
1 ATTGGATGT-TTGCATTGGGAAAC-TGAAGTGGATGCTATCCATTGACAAGGAAAGAGCA-TTTA
* * * * *
8975362 A-TCTTATTATGCCTTCGAAAGCTTGAAATGATTTATCAATGAATAATTACCATTTTCATAACAT
63 AGT-TGATCATGCCTTCGAAAGCTTGAAAAGATTTATCAATGAATAATTATCATTTTGATAACAT
** ** * *
8975426 TTTATCATCAACCTTATGATATATAATTCATTTATAATCATATGAATGACTATAAATAAAAAATG
127 TTTATCATCAATATTACAATATATAATTCATTTATAATCTTATAAATGA-T-T--AT-----A--
* * * * ** *
8975491 AATCAAAAATAAATCTAAAGCTTTATT-TTTTTTATTAAAA-CTATCATA
181 AATCAAAAATAAAT-GAAAGTTTTGTTGTTCTTGGTTAAAACCTTTCATA
* * * ** * *
8975539 ATTTGATGTTTGTATTGGGACACATGAAGTGGACACTATCCATTGACAACGAAAAAGCATTTTAA
1 ATTGGATGTTTGCATTGGGAAAC-TGAAGTGGATGCTATCCATTGACAAGGAAAGAGCA-TTTAA
* * * * *
8975604 GTTTATCATGTCTTCG-AAGCCTTGAAATGATGTATCAATGAATAATTATCATTTTTATAACATT
64 GTTGATCATGCCTTCGAAAG-CTTGAAAAGATTTATCAATGAATAATTATCATTTTGATAACATT
** * * * *
8975668 TTATTGTTAATATTACGATATAGAATTCATTTGTAATCTTATAAATGATTATAAATTGAAAACAT
128 TTATCATCAATATTACAATATATAATTCATTTATAATCTTATAAATGATTATAAA-T-----C--
* * * * *
8975733 AGCCAAAATAAATTGAAGGCTTTGTTGTTCTTGGTTCAAACCTATCTTA
185 A---AAAATAAA-TGAAAGTTTTGTTGTTCTTGGTTAAAACCTTTCATA
* * * *
8975782 ATTGGATGTTTGCATTGGGAAATGTGAAATGGATGCTATCCACTAACAAGGAAAGAGCATATTAA
1 ATTGGATGTTTGCATTGGGAAA-CTGAAGTGGATGCTATCCATTGACAAGGAAAGAGCAT-TTAA
* * * * * *
8975847 TTTTATCATGCCTTCAAAAGCTTGGAATGATATATCAATGAATAATTATCATTTTGATAACATTT
64 GTTGATCATGCCTTCGAAAGCTTGAAAAGATTTATCAATGAATAATTATCATTTTGATAACATTT
* * * * * **
8975912 TGTCACCAATATTATGAA-ATATAATTCTTTTATAATCTAATAAACAATTATAAATCAAAAATAA
129 TATCATCAATATTA-CAATATATAATTCATTTATAATCTTATAAATGATTATAAATCAAAAAT-A
* * **
8975976 AATGAAAGCTTTGTTGTTCTTAGTTAAAA-CTTAAACTA
192 AATGAAAGTTTTGTTGTTCTTGGTTAAAACCTTTCA-TA
* * * *
8976014 ATTGGATGTTTGC-TATGGGAAACATGAAGTGGAAGCTATCTATTGACAAGGAAAGGGCACTGTA
1 ATTGGATGTTTGCAT-TGGGAAAC-TGAAGTGGATGCTATCCATTGACAAGGAAAGAGCA-TTTA
* * * * * * *
8976078 AGTTTATCTTGCCTTCAAAAGCTTCAAATGATTTATCAATGAGTAATTCTCA-TTTGAATTAA-A
63 AGTTGATCATGCCTTCGAAAGCTTGAAAAGATTTATCAATGAATAATTATCATTTTG-A-TAACA
* ** * *
8976141 TTTTATCATCGATATTATGATTTATAATTCATTTATAATCTTATGAATGATTATAAATAAAAAAT
126 TTTTATCATCAATATTACAATATATAATTCATTTATAATCTTAT-AA--ATGAT---T-----AT
* * * *
8976206 AAATCAAAAATAAATCAAAGACTTTGTTGTTGTTGGTTAAAACCTATCATA
180 AAATCAAAAATAAATGAAAG-TTTTGTTGTTCTTGGTTAAAACCTTTCATA
* * *
8976257 ATTGGCTGTTTGCATTGGGAAACATGAAGTGGATGTTATCCATTGACAAGGAAAAAGCATTTCAA
1 ATTGGATGTTTGCATTGGGAAAC-TGAAGTGGATGCTATCCATTGACAAGGAAAGAGCATTT-AA
* * * * * *
8976322 GCTT-ATCGTGTCTTCG-AAGCCTTGAAATGTTTTGTCAATGAATAATTATCATTTTAATAACAT
64 G-TTGATCATGCCTTCGAAAG-CTTGAAAAGATTTATCAATGAATAATTATCATTTTGATAACAT
** ** *
8976385 TTTAAGATCAATATTATGATAAATAATTCATTTATAATCTTATAAATGATTATAAATAAAAATTA
127 TTTATCATCAATATTACAATATATAATTCATTTATAATCTTATAAATG---AT---T----A-TA
* * * *
8976450 AATTAAAAATAAATCAAAAGTTTTGTTGTTCTTGGTTAAAA-CTTATCGTG
181 AATCAAAAATAAAT-GAAAGTTTTGTTGTTCTTGGTTAAAACCTT-TCATA
** * *
8976500 ATTGGATGTTTGCATTATGAAATGTGAAGTGGATGCTATCTATTGACAAGGAAAGAGCATTTTAA
1 ATTGGATGTTTGCATTGGGAAA-CTGAAGTGGATGCTATCCATTGACAAGGAAAGAGCA-TTTAA
* * * * *
8976565 GTTTATCATGCCTTTGAAAGCCTGGAATGATTTATCAATGAATAATTAT
64 GTTGATCATGCCTTCGAAAGCTTGAAAAGATTTATCAATGAATAATTAT
8976614 TGTAACACCC
Statistics
Matches: 2664, Mismatches: 540, Indels: 500
0.72 0.15 0.13
Matches are distributed among these distances:
218 1 0.00
219 4 0.00
220 86 0.03
221 214 0.08
222 3 0.00
224 2 0.00
225 2 0.00
227 2 0.00
228 1 0.00
229 15 0.01
230 375 0.14
231 259 0.10
232 185 0.07
233 10 0.00
234 9 0.00
235 12 0.00
236 13 0.00
237 8 0.00
238 14 0.01
239 145 0.05
240 23 0.01
241 173 0.06
242 74 0.03
243 467 0.18
244 34 0.01
245 14 0.01
246 15 0.01
247 7 0.00
248 10 0.00
249 3 0.00
251 6 0.00
252 22 0.01
253 131 0.05
254 48 0.02
255 58 0.02
256 81 0.03
257 7 0.00
258 10 0.00
259 3 0.00
260 1 0.00
263 2 0.00
264 1 0.00
265 1 0.00
267 6 0.00
268 105 0.04
269 2 0.00
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.37
Consensus pattern (229 bp):
ATTGGATGTTTGCATTGGGAAACTGAAGTGGATGCTATCCATTGACAAGGAAAGAGCATTTAAGT
TGATCATGCCTTCGAAAGCTTGAAAAGATTTATCAATGAATAATTATCATTTTGATAACATTTTA
TCATCAATATTACAATATATAATTCATTTATAATCTTATAAATGATTATAAATCAAAAATAAATG
AAAGTTTTGTTGTTCTTGGTTAAAACCTTTCATA
Found at i:8974649 original size:25 final size:25
Alignment explanation
Indices: 8974615--8974665 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
8974605 AAAAAACATT
*
8974615 TTTACTTTATCTTACCTTCGAAGGC
1 TTTACTTTATCCTACCTTCGAAGGC
*
8974640 TTTAGTTTATCCTACCTTCGAAGGC
1 TTTACTTTATCCTACCTTCGAAGGC
8974665 T
1 T
8974666 AGAAATGATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.43
Consensus pattern (25 bp):
TTTACTTTATCCTACCTTCGAAGGC
Found at i:8975892 original size:243 final size:239
Alignment explanation
Indices: 8973580--8976613 Score: 2253
Period size: 243 Copynumber: 12.6 Consensus size: 239
8973570 AATCGAAACT
* * * * * *
8973580 TTTGTTGTTCTTGGTCAAAACTTATCATAATTGGTTGTTTGCATTGGGAAACGTGAGGTAGATGC
1 TTTGTTGTTCTTGGTTAAAACCTATCATAATTGGATGTTTGCATTGGGAAACATGAAGTGGATGC
* * * *
8973645 TATCCATTGACAAGGAGAGAACATTTTAAGTGTATCATGCCTTCAAAGGGTTGAAATGATTTATC
66 TATCCATTGACAAGGAAAGAGCA-TTTAAGTTTATCATGCCTTCAAA-GCTTGAAATGATTTATC
* * * * **
8973710 AATGAATAATTATCATTTTGATAACATTTTATCTTAAACATTACAATATATAATTCATTTATAAT
129 AATGAATAATTATCATTTTAATAACATTTTATCATCAATATTATGATATATAATTCATTTATAAT
* * * * *
8973775 CTTAT-AA-G----TGAAT--GA-AAATCGAAAATAAA-TGAAAGT
194 CTTATAAATGATTATAAATAAAACAAATCAAAAATAAATTAAAAGC
* * * * *
8973811 TTTGTTGTTCTTGGTTAAAACCTTTTAAAATTGGATGTTTGCAAT-GGAAACGTGAAGTGGATGC
1 TTTGTTGTTCTTGGTTAAAACCTATCATAATTGGATGTTTGCATTGGGAAACATGAAGTGGATGC
* * * * *
8973875 TATCCGTTGACAAGGAAAGAGCATATTAAGTTGATCATGCCTTTGAAAGCTTTAAAAGATTTATC
66 TATCCATTGACAAGGAAAGAGCAT-TTAAGTTTATCATGCC-TTCAAAGCTTGAAATGATTTATC
* * * *
8973940 AATGAATAATTATCATTTTGATAACAATTTCTCATCAATATTACGATATATAATTCTTTTATATT
129 AATGAATAATTATCATTTTAATAACATTTTATCATCAATATTATGATATATAATTC------A-T
* * * **
8974005 TTGATAAATGATTATAAATTGGA-AATAAATAGAAAATAAATCAAAAATAAATCCAAAGC
187 TT-AT-AAT-CTTATAAA-T-GATTATAAAT--AAAACAAATCAAAAATAAATTAAAAGC
* * * * * **
8974064 TTTGTTGTTCTTGATGAAAACTTATCCTAATTGGATGTTTGCCTTAAGAGAA-ATGAAGTGGATG
1 TTTGTTGTTCTTGGTTAAAACCTATCATAATTGGATGTTTGCATTGGGA-AACATGAAGTGGATG
* * * *
8974128 CTATCCATTGACAAGGGAAGAGAATTTTAGTTTATTATGCCTTCGAAAGCTTGAAATGATTTATC
65 CTATCCATTGACAAGGAAAGAGCATTTAAGTTTATCATGCCTTC-AAAGCTTGAAATGATTTATC
* * * * * *
8974193 AATGAATAATTATCAATTTGATAACATTTTATCATTAATATTATAATATATAAGTAATTTATAAT
129 AATGAATAATTATCATTTTAATAACATTTTATCATCAATATTATGATATATAATTCATTTATAAT
*
8974258 CTTATAAATGATTATAGAT--------T-AAAAATAAATTAAAA-C
194 CTTATAAATGATTATAAATAAAACAAATCAAAAATAAATTAAAAGC
* * * *
8974294 TTTTGTTGTTCTTGGTTAAAACCTAT-AGCAATTGGCTATTTGCATTGGGGAATC-TGAAGTGGA
1 -TTTGTTGTTCTTGGTTAAAACCTATCA-TAATTGGATGTTTGCATT-GGGAAACATGAAGTGGA
* * ** * ** *
8974357 TGCTATCCATCGGCAACAAAAGAGGATTTATTTTTATCATGCCTTCAAAAGCTTGAAAAGATTTA
63 TGCTATCCATTGACAAGGAAAGAGCATTTAAGTTTATCATGCCTTC-AAAGCTTGAAATGATTTA
* *
8974422 TCAATGAATAGTTATCATTTTGATAACATTTTATCATCAATATTATGAT-TATAATTCATTTATA
127 TCAATGAATAATTATCATTTTAATAACATTTTATCATCAATATTATGATATATAATTCATTTATA
*
8974486 ATCTTATAAATGA-T-T--AT-----AAATCAAAAATAAATTGAAAGC
192 ATCTTATAAATGATTATAAATAAAACAAATCAAAAATAAATTAAAAGC
** * * *
8974525 TTCATTGTTCTTAGCTAAAACCTATCATAATTGGATATTTGCATTGGGAAACATGAAGTGGATGC
1 TTTGTTGTTCTTGGTTAAAACCTATCATAATTGGATGTTTGCATTGGGAAACATGAAGTGGATGC
* * * * * * * *
8974590 TATCCACTGACAAGGAAAAAACATTTTTACTTTATCTTACCTTCGAAGGCTTTAGTTTATCCTAC
66 TATCCATTGACAAGGAAAGAGCA-TTTAAGTTTATCATGCCTTC-AAAGC-TT-G---A----A-
* ** ** * *
8974655 CTTCGAAGGCTAGAAATGATTTATCAATGAATAATTCTCATTTTGATAACATTTTATCATCAACA
119 -AT-G-A-TTTATCAATGA---AT-AAT---T-A---TCATTTTAATAACATTTTATCATCAATA
* * * *
8974720 TTATGATATATAATTCATTTATAATCTTACAAATTATTATAAATAGAAA-ATGAGTAAAAAATAA
169 TTATGATATATAATTCATTTATAATCTTATAAATGATTATAAATA-AAACA--AATCAAAAATAA
*
8974784 ATGAAAAGC
231 ATTAAAAGC
* * * * * **
8974793 TTTGTTGTTCTTGGTTAAAACCTATTAGAATTGGATGTTTGAATCGGTAAATGTGACA-TGGATG
1 TTTGTTGTTCTTGGTTAAAACCTATCATAATTGGATGTTTGCATTGGGAAACATGA-AGTGGATG
* * * * *
8974857 TTTTCCATTGACAAAGAAAGAGCATATTAAGTTTAACATGCCTTTGAAAGCTTGAAATGATTTAT
65 CTATCCATTGACAAGGAAAGAGCAT-TTAAGTTTATCATGCC-TTCAAAGCTTGAAATGATTTAT
* * * * * *
8974922 TAATGAATAATTATTC-TTTTGATAACATTGTATCACCAATATTACGATATATAACTC-TTTAAT
128 CAATGAATAATTA-TCATTTTAATAACATTTTATCATCAATATTATGATATATAATTCATTT-AT
* * * * *
8974985 AATGTAATAAATTATTATAAATTAAAAATAAATAAAAAACAAATAAAAAAATTTAATCAAAAGC
191 AATCTTATAAATGATTATAAA-T-AAAACAAAT------C-AA-AAATAAA--T--T-AAAAGC
* * * ** * * * * *
8975049 TTTATTGTTCATGGATAAAATGTATCCTAATTGGATGTTTGCTTTGGGAGATATAAAGTGGATGC
1 TTTGTTGTTCTTGGTTAAAACCTATCATAATTGGATGTTTGCATTGGGAAACATGAAGTGGATGC
* * * * ** * * *
8975114 TATCCATTGACAAGAAAAGAGAATTTTCAGTTTATCATGCTTTCGAAAGCAAGCAGTAATTTATC
66 TATCCATTGACAAGGAAAGAGCA-TTTAAGTTTATCATGCCTTC-AAAGCTTGAAATGATTTATC
* * * * * *
8975179 GATGAATAATTATCA-TTTGATAACATTTTATCATCAATAATATCATACATAATTCAATTATAAT
129 AATGAATAATTATCATTTTAATAACATTTTATCATCAATATTATGATATATAATTCATTTATAAT
8975243 CTTATAAATGATTATAAAT--------TC------------AAAGC
194 CTTATAAATGATTATAAATAAAACAAATCAAAAATAAATTAAAAGC
** * * * * ** * * * *
8975269 TTCATTGTTCTTGATTAAAACTTATCATTATTGAATTATTGCATTAGAAAACGTGAAGTTGATGC
1 TTTGTTGTTCTTGGTTAAAACCTATCATAATTGGATGTTTGCATTGGGAAACATGAAGTGGATGC
* * ** *
8975334 TATTCATTGACAAGGAAACAATATTTTAA-TCTTATTATGCCTTCGAAAGCTTGAAATGATTTAT
66 TATCCATTGACAAGGAAAGAGCA-TTTAAGT-TTATCATGCCTTC-AAAGCTTGAAATGATTTAT
* * **
8975398 CAATGAATAATTACCATTTTCATAACATTTTATCATCAACCTTATGATATATAATTCATTTATAA
128 CAATGAATAATTATCATTTTAATAACATTTTATCATCAATATTATGATATATAATTCATTTATAA
* * * *
8975463 TCATATGAATGACTATAAATAAAAAATGAATCAAAAATAAATCT-AAAGC
193 TCTTATAAATGATTATAAATAAAACA--AATCAAAAATAAAT-TAAAAGC
* * ** * * * **
8975512 TTTATT-TTTTTTATTAAAA-CTATCATAATTTGATGTTTGTATTGGGACACATGAAGTGGACAC
1 TTTGTTGTTCTTGGTTAAAACCTATCATAATTGGATGTTTGCATTGGGAAACATGAAGTGGATGC
* * * * *
8975575 TATCCATTGACAACGAAAAAGCATTTTAAGTTTATCATGTCTTCGAAGCCTTGAAATGATGTATC
66 TATCCATTGACAAGGAAAGAGCA-TTTAAGTTTATCATGCCTTCAAAG-CTTGAAATGATTTATC
* ** * * * *
8975640 AATGAATAATTATCATTTTTATAACATTTTATTGTTAATATTACGATATAGAATTCATTTGTAAT
129 AATGAATAATTATCATTTTAATAACATTTTATCATCAATATTATGATATATAATTCATTTATAAT
* * * * *
8975705 CTTATAAATGATTATAAATTGAAAACATAGCCAAAATAAATTGAAGGC
194 CTTATAAATGATTATAAA-T-AAAACAAATCAAAAATAAATTAAAAGC
* * ** *
8975753 TTTGTTGTTCTTGGTTCAAACCTATCTTAATTGGATGTTTGCATTGGGAAATGTGAAATGGATGC
1 TTTGTTGTTCTTGGTTAAAACCTATCATAATTGGATGTTTGCATTGGGAAACATGAAGTGGATGC
* * * * *
8975818 TATCCACTAACAAGGAAAGAGCATATTAATTTTATCATGCCTTCAAAAGCTTGGAATGATATATC
66 TATCCATTGACAAGGAAAGAGCAT-TTAAGTTTATCATGCCTTC-AAAGCTTGAAATGATTTATC
* * * * *
8975883 AATGAATAATTATCATTTTGATAACATTTTGTCACCAATATTATGAAATATAATTCTTTTATAAT
129 AATGAATAATTATCATTTTAATAACATTTTATCATCAATATTATGATATATAATTCATTTATAAT
* * * * *
8975948 CTAATAAA-CA--AT---T---ATAAATCAAAAATAAAATGAAAGC
194 CTTATAAATGATTATAAATAAAACAAATCAAAAATAAATTAAAAGC
* * * *
8975985 TTTGTTGTTCTTAGTTAAAACTTA-AACTAATTGGATGTTTGC-TATGGGAAACATGAAGTGGAA
1 TTTGTTGTTCTTGGTTAAAACCTATCA-TAATTGGATGTTTGCAT-TGGGAAACATGAAGTGGAT
* * * * *
8976048 GCTATCTATTGACAAGGAAAGGGCACTGTAAGTTTATCTTGCCTTCAAAAGCTTCAAATGATTTA
64 GCTATCCATTGACAAGGAAAGAGCA-TTTAAGTTTATCATGCCTTC-AAAGCTTGAAATGATTTA
* * * * *
8976113 TCAATGAGTAATTCTCATTTGAATTAA-ATTTTATCATCGATATTATGATTTATAATTCATTTAT
127 TCAATGAATAATTATCATTTTAA-TAACATTTTATCATCAATATTATGATATATAATTCATTTAT
* * *
8976177 AATCTTATGAATGATTATAAATAAAAAATAAATCAAAAATAAA-TCAAAGAC
191 AATCTTATAAATGATTATAAAT--AAAACAAATCAAAAATAAATTAAAAG-C
* * *
8976228 TTTGTTGTTGTTGGTTAAAACCTATCATAATTGGCTGTTTGCATTGGGAAACATGAAGTGGATGT
1 TTTGTTGTTCTTGGTTAAAACCTATCATAATTGGATGTTTGCATTGGGAAACATGAAGTGGATGC
* * * * * * *
8976293 TATCCATTGACAAGGAAAAAGCATTTCAAGCTTATCGTGTCTTCGAAGCCTTGAAATGTTTTGTC
66 TATCCATTGACAAGGAAAGAGCATTT-AAGTTTATCATGCCTTCAAAG-CTTGAAATGATTTATC
** *
8976358 AATGAATAATTATCATTTTAATAACATTTTAAGATCAATATTATGATAAATAATTCATTTATAAT
129 AATGAATAATTATCATTTTAATAACATTTTATCATCAATATTATGATATATAATTCATTTATAAT
* * * *
8976423 CTTATAAATGATTATAAATAAAAATTAAATTAAAAATAAATCAAAAGT
194 CTTATAAATGATTATAAAT-AAAA-CAAATCAAAAATAAATTAAAAGC
* * * ** **
8976471 TTTGTTGTTCTTGGTTAAAACTTATCGTGATTGGATGTTTGCATTATGAAATGTGAAGTGGATGC
1 TTTGTTGTTCTTGGTTAAAACCTATCATAATTGGATGTTTGCATTGGGAAACATGAAGTGGATGC
* * * *
8976536 TATCTATTGACAAGGAAAGAGCATTTTAAGTTTATCATGCCTTTGAAAGCCTGGAATGATTTATC
66 TATCCATTGACAAGGAAAGAGCA-TTTAAGTTTATCATGCC-TTCAAAGCTTGAAATGATTTATC
8976601 AATGAATAATTAT
129 AATGAATAATTAT
8976614 TGTAACACCC
Statistics
Matches: 2212, Mismatches: 430, Indels: 310
0.75 0.15 0.11
Matches are distributed among these distances:
219 1 0.00
220 114 0.05
221 58 0.03
226 2 0.00
228 1 0.00
229 9 0.00
230 220 0.10
231 224 0.10
232 186 0.08
233 6 0.00
235 2 0.00
236 3 0.00
237 3 0.00
238 3 0.00
239 4 0.00
240 11 0.00
241 174 0.08
242 51 0.02
243 542 0.25
244 28 0.01
245 12 0.01
246 4 0.00
247 6 0.00
248 2 0.00
249 2 0.00
250 5 0.00
251 9 0.00
252 16 0.01
253 121 0.05
254 43 0.02
255 61 0.03
256 147 0.07
257 28 0.01
258 1 0.00
259 2 0.00
261 2 0.00
263 1 0.00
266 2 0.00
267 3 0.00
268 100 0.05
269 3 0.00
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.37
Consensus pattern (239 bp):
TTTGTTGTTCTTGGTTAAAACCTATCATAATTGGATGTTTGCATTGGGAAACATGAAGTGGATGC
TATCCATTGACAAGGAAAGAGCATTTAAGTTTATCATGCCTTCAAAGCTTGAAATGATTTATCAA
TGAATAATTATCATTTTAATAACATTTTATCATCAATATTATGATATATAATTCATTTATAATCT
TATAAATGATTATAAATAAAACAAATCAAAAATAAATTAAAAGC
Found at i:8976221 original size:11 final size:11
Alignment explanation
Indices: 8976193--8976224 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
8976183 ATGAATGATT
*
8976193 ATAAATAAAAA
1 ATAAATCAAAA
8976204 ATAAATCAAAA
1 ATAAATCAAAA
8976215 ATAAATCAAA
1 ATAAATCAAA
8976225 GACTTTGTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.75, C:0.06, G:0.00, T:0.19
Consensus pattern (11 bp):
ATAAATCAAAA
Found at i:8976233 original size:475 final size:473
Alignment explanation
Indices: 8975256--8976613 Score: 1306
Period size: 475 Copynumber: 2.8 Consensus size: 473
8975246 ATAAATGATT
** * * * * * *
8975256 ATAAATTCAAAG-CTTCATTGTTCTTGATTAAAACTTATCATTATTGAAT-TATTGCATTAGAAA
1 ATAAA-TCAAAGACTTTGTTGTTCTTGGTTAAAACCTATCATAATTGGATGT-TTGCATTGGGAA
* * * * * * * *
8975319 ACGTGAAGTTGATGCTATTCATTGACAAGGAAACAA-TATTTTAATCTTATTATGCCTTCGAAAG
64 ACATGAAATGGATGCTATCCACTAACAAGGAAA-AAGCA-TTTAATCTTATCATGCCTTC-AAAG
* * ** *
8975383 CTTGAAATGATTTATCAATGAATAATTACCATTTTCATAACATTTTATCATCAACCTTATGATAT
126 CTTGAAATGATTTATCAATGAATAATTATCATTTTAATAACATTTTATCATCAATATTATGAAAT
* * *
8975448 ATAATTCATTTATAATC-ATATGAATGACTATAAATAAAAAATGAATCAAAAAT-AAATCTAAAG
191 ATAATTCATTTATAATCTA-AT-AA--AC----AAT----TATAAATCAAAAATAAAATCAAAAG
* * * * *
8975511 CTTTATTTTTTTTA-TTAAAAC-TATCATAATTTGATGTTTG-TATTGGGACACATGAAGTGGAC
244 CTTTGTTGTTCTTAGTTAAAACTTATCATAATTGGATGTTTGCTA-TGGGAAACATGAAGTGGA-
* * * * * *
8975573 A-CTATCCATTGACAACGAAAAAGCATTTTAAGTTTATCATGTCTTCGAAGCCTTGAAATGATGT
307 AGCTATCTATTGACAAGGAAAGAGCATTTTAAGTTTATCATGCCTTCAAAG-CTTGAAATGATTT
** ** * *
8975637 ATCAATGAATAATTATCATTTTTATAACATTTTATTGTTAATATTACGATATAGAATTCATTTGT
371 ATCAATGAATAATTATCATTTGAATAACATTTTATCATCAATATTACGATATAGAATTCATTTAT
** * *
8975702 AATCTTATAAATGATTATAAATTGAAAACATAGCCAAA
436 AATCTTATAAATGATTATAAATAAAAAACAAAGCAAAA
** * * * *
8975740 ATAAATTGAAGGCTTTGTTGTTCTTGGTTCAAACCTATCTTAATTGGATGTTTGCATTGGGAAAT
1 ATAAATCAAAGACTTTGTTGTTCTTGGTTAAAACCTATCATAATTGGATGTTTGCATTGGGAAAC
* * *
8975805 GTGAAATGGATGCTATCCACTAACAAGGAAAGAGCATATTAATTTTATCATGCCTTCAAAAGCTT
66 ATGAAATGGATGCTATCCACTAACAAGGAAAAAGCAT-TTAATCTTATCATGCCTTC-AAAGCTT
* * * * *
8975870 GGAATGATATATCAATGAATAATTATCATTTTGATAACATTTTGTCACCAATATTATGAAATATA
129 GAAATGATTTATCAATGAATAATTATCATTTTAATAACATTTTATCATCAATATTATGAAATATA
* *
8975935 ATTCTTTTATAATCTAATAAACAATTATAAATCAAAAATAAAAT-GAAAGCTTTGTTGTTCTTAG
194 ATTCATTTATAATCTAATAAACAATTATAAATCAAAAATAAAATCAAAAGCTTTGTTGTTCTTAG
*
8975999 TTAAAACTTA-AACTAATTGGATGTTTGCTATGGGAAACATGAAGTGGAAGCTATCTATTGACAA
259 TTAAAACTTATCA-TAATTGGATGTTTGCTATGGGAAACATGAAGTGGAAGCTATCTATTGACAA
* * * * * * *
8976063 GGAAAGGGCACTGTAAGTTTATCTTGCCTTCAAAAGCTTCAAATGATTTATCAATGAGTAATTCT
323 GGAAAGAGCATTTTAAGTTTATCATGCCTTC-AAAGCTTGAAATGATTTATCAATGAATAATTAT
* * * * *
8976128 CATTTGAATTAA-ATTTTATCATCGATATTATGATTTATAATTCATTTATAATCTTATGAATGAT
387 CATTTGAA-TAACATTTTATCATCAATATTACGATATAGAATTCATTTATAATCTTATAAATGAT
* *
8976192 TATAAATAAAAAATAAATCAAAA
451 TATAAATAAAAAACAAAGCAAAA
* *
8976215 ATAAATCAAAGACTTTGTTGTTGTTGGTTAAAACCTATCATAATTGGCTGTTTGCATTGGGAAAC
1 ATAAATCAAAGACTTTGTTGTTCTTGGTTAAAACCTATCATAATTGGATGTTTGCATTGGGAAAC
* * * * * * * *
8976280 ATGAAGTGGATGTTATCCATTGACAAGGAAAAAGCATTTCAAGCTTATCGTGTCTTCGAAGCCTT
66 ATGAAATGGATGCTATCCACTAACAAGGAAAAAGCATTT-AATCTTATCATGCCTTCAAAG-CTT
* * **
8976345 GAAATGTTTTGTCAATGAATAATTATCATTTTAATAACATTTTAAGATCAATATTATGATAA-AT
129 GAAATGATTTATCAATGAATAATTATCATTTTAATAACATTTTATCATCAATATTATGA-AATAT
* ** * *
8976409 AATTCATTTATAATCTTATAAATGATTATAAATAAAAATTAAATTAAAAATAAATCAAAAGTTTT
193 AATTCATTTATAATCTAATAAACAATTATAAAT--CAA--AAA-T----A-AAATCAAAAGCTTT
* * * ** *
8976474 GTTGTTCTTGGTTAAAACTTATCGTGATTGGATGTTTGCATTAT--GAAATGTGAAGTGGATGCT
248 GTTGTTCTTAGTTAAAACTTATCATAATTGGATGTTTGC--TATGGGAAACATGAAGTGGAAGCT
* * *
8976537 ATCTATTGACAAGGAAAGAGCATTTTAAGTTTATCATGCCTTTGAAAGCCTGGAATGATTTATCA
311 ATCTATTGACAAGGAAAGAGCATTTTAAGTTTATCATGCC-TTCAAAGCTTGAAATGATTTATCA
8976602 ATGAATAATTAT
375 ATGAATAATTAT
8976614 TGTAACACCC
Statistics
Matches: 719, Mismatches: 124, Indels: 60
0.80 0.14 0.07
Matches are distributed among these distances:
473 27 0.04
474 18 0.03
475 345 0.48
476 10 0.01
477 5 0.01
479 3 0.00
480 1 0.00
481 2 0.00
483 8 0.01
484 168 0.23
485 6 0.01
486 121 0.17
487 2 0.00
488 3 0.00
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.37
Consensus pattern (473 bp):
ATAAATCAAAGACTTTGTTGTTCTTGGTTAAAACCTATCATAATTGGATGTTTGCATTGGGAAAC
ATGAAATGGATGCTATCCACTAACAAGGAAAAAGCATTTAATCTTATCATGCCTTCAAAGCTTGA
AATGATTTATCAATGAATAATTATCATTTTAATAACATTTTATCATCAATATTATGAAATATAAT
TCATTTATAATCTAATAAACAATTATAAATCAAAAATAAAATCAAAAGCTTTGTTGTTCTTAGTT
AAAACTTATCATAATTGGATGTTTGCTATGGGAAACATGAAGTGGAAGCTATCTATTGACAAGGA
AAGAGCATTTTAAGTTTATCATGCCTTCAAAGCTTGAAATGATTTATCAATGAATAATTATCATT
TGAATAACATTTTATCATCAATATTACGATATAGAATTCATTTATAATCTTATAAATGATTATAA
ATAAAAAACAAAGCAAAA
Found at i:8976437 original size:718 final size:704
Alignment explanation
Indices: 8974668--8976613 Score: 2044
Period size: 718 Copynumber: 2.7 Consensus size: 704
8974658 CGAAGGCTAG
8974668 AAATGATTTATCAATGAATAATTCTCATTTTGATAACATTTTATCATCAACATTATGATATATAA
1 AAATGATTTATCAATGAATAATTCTCA-TTTGATAACATTTTATCATCAACATTATGATATATAA
** * * * * *
8974733 TTCATTTATAATCTTACAAATTATTATAAATAGAAAATGAGTAAAAAATAAATGAAA-AGCTTTG
65 TTCATTTATAATCTTATGAATGATTATAAATAAAAAATGAATCAAAAATAAATCAAAGA-CTTTG
* * * * ** *
8974797 TTGTTCTTGGTTAAAACCTATTAGAATTGGATGTTTGAATCGGTAAATGTGACA-TGGATGTTTT
129 TTGTTCTTGGTTAAAACCTATCATAATTGGATGTTTGAATTGGGAAACATGA-AGTGGATGTTAT
* * * * *
8974861 CCATTGACAAAGAAAGAGCATATTAAGTTTAACATGCCTTTGAAAG-CTTGAAATGATTTATTAA
193 CCATTGACAAAGAAAAAGCAT-TTAAGTTTATCATGTCTTCG-AAGCCTTGAAATGATTTATCAA
* * * * *
8974925 TGAATAATTATTC-TTTTGATAACATTGTATCACCAATATTACGATATATAACTC-TTTAATAAT
256 TGAATAATTA-TCATTTTAATAACATTTTATGATCAATATTACGATATATAATTCATTT-ATAAT
* * * * *
8974988 GTAATAAATTATTATAAATTAAAAATAAATAAAAAACAAATAAAAAAATTTAATCAAAAGCTTTA
319 CTTATAAATGATTATAAATT-AAAA-AAAT----AAC-AA-AAATAAA--T--T-AAAAGCTTTG
* * ** * * *
8975053 TTGTTCATGGATAAAATGTATCCTAATTGGATGTTTGCTTTGGGAGATAT-AAAGTGGATGCTAT
371 TTGTTCTTGGTTAAAACCTATCCTAATTGGATGTTTGCATTGGGAAATGTGAAA-TGGATGCTAT
* * * * * * * * *
8975117 CCATTGACAAGAAAAGAGAATTTTCAGTTTATCATGCTTTCGAAAGCAAGCAGTAATTTATCGAT
435 CCATTGACAAGGAAAGAGCATTTTAAGTTTATCATGCCTTCGAAAGCATGGAATGATTTATCAAT
* * *
8975182 GAATAATTATCATTTGATAACATTTTATCATCAATAATATCATACATAATTCAATTATAATCTTA
500 GAATAATTATCATTTGATAACATTTTATCACCAATAATATCAAACATAATTCAATTATAAACTTA
* ** * * *
8975247 TAAATGATTATAAATTCAAAGCTTCATTGTTCTTGATTAAAACTTATCATTATTGAATTATTGCA
565 TAAATAAAAATAAAATCAAAGCTTCATTGTTCTTGATTAAAACTTAACATAATTGAATTATTGCA
* * * * * *
8975312 TTAGAAAACGTGAAGTTGATGCTATTCATTGACAAGGAAACAATATTTTAATCTTATTATGCCTT
630 TTAGAAAACATGAAGTGGAAGCTATTCATTGACAAGGAAACAACACTGTAATCTTATTATGCCTT
* *
8975377 CGAAAGCTTG
695 CAAAAGCTTC
* *
8975387 AAATGATTTATCAATGAATAATTAC-CATTTTCATAACATTTTATCATCAACCTTATGATATATA
1 AAATGATTTATCAATGAATAATT-CTCA-TTTGATAACATTTTATCATCAACATTATGATATATA
* *
8975451 ATTCATTTATAATCATATGAATGACTATAAATAAAAAATGAATCAAAAATAAATCTAAAG-CTTT
64 ATTCATTTATAATCTTATGAATGATTATAAATAAAAAATGAATCAAAAATAAATC-AAAGACTTT
* * ** * * * ***
8975515 ATT-TTTTTTATTAAAA-CTATCATAATTTGATGTTTGTATTGGGACACATGAAGTGGACACTAT
128 GTTGTTCTTGGTTAAAACCTATCATAATTGGATGTTTGAATTGGGAAACATGAAGTGGATGTTAT
* *
8975578 CCATTGACAACGAAAAAGCATTTTAAGTTTATCATGTCTTCGAAGCCTTGAAATGATGTATCAAT
193 CCATTGACAAAGAAAAAGCA-TTTAAGTTTATCATGTCTTCGAAGCCTTGAAATGATTTATCAAT
* * * *
8975643 GAATAATTATCATTTTTATAACATTTTATTG-TTAATATTACGATATAGAATTCATTTGTAATCT
257 GAATAATTATCATTTTAATAACATTTTA-TGATCAATATTACGATATATAATTCATTTATAATCT
* * * * * * *
8975707 TATAAATGATTATAAATTGAAAACATAGCCAAAATAAATTGAAGGCTTTGTTGTTCTTGGTTCAA
321 TATAAATGATTATAAATTAAAAAAATAACAAAAATAAATTAAAAGCTTTGTTGTTCTTGGTTAAA
* * *
8975772 ACCTATCTTAATTGGATGTTTGCATTGGGAAATGTGAAATGGATGCTATCCACTAACAAGGAAAG
386 ACCTATCCTAATTGGATGTTTGCATTGGGAAATGTGAAATGGATGCTATCCATTGACAAGGAAAG
* * * * *
8975837 AGCATATTAATTTTATCATGCCTTCAAAAGCTTGGAATGATATATCAATGAATAATTATCATTTT
451 AGCATTTTAAGTTTATCATGCCTTCGAAAGCATGGAATGATTTATCAATGAATAATTATCA-TTT
* * * *
8975902 GATAACATTTTGTCACCAATATTATGAAATATAATTCTTTTATAATCTAATAAACAATTATAAAT
515 GATAACATTTTATCACCAATAATATCAAACATAATTC------AAT-T-ATAAAC--TTATAAAT
* ** *
8975967 CAAAAATAAAATGAAAGCTTTGTTGTTCTT-AGTTAAAACTTAA-ACTAATTGGATGT-TTGC-T
570 -AAAAATAAAATCAAAGCTTCATTGTTCTTGA-TTAAAACTTAACA-TAATTGAAT-TATTGCAT
* * ***
8976028 ATGGGAAACATGAAGTGGAAGCTA-TCTATTGACAAGGAAAGGGCACTGTAAGT-TTATCT-TGC
631 -TAGAAAACATGAAGTGGAAGCTATTC-ATTGACAAGGAAACAACACTGTAA-TCTTAT-TATGC
8976090 CTTCAAAAGCTTC
692 CTTCAAAAGCTTC
* * * *
8976103 AAATGATTTATCAATGAGTAATTCTCATTTGAATTAA-ATTTTATCATCGATATTATGATTTATA
1 AAATGATTTATCAATGAATAATTCTCATTTG-A-TAACATTTTATCATCAACATTATGATATATA
*
8976167 ATTCATTTATAATCTTATGAATGATTATAAATAAAAAATAAATCAAAAATAAATCAAAGACTTTG
64 ATTCATTTATAATCTTATGAATGATTATAAATAAAAAATGAATCAAAAATAAATCAAAGACTTTG
* * *
8976232 TTGTTGTTGGTTAAAACCTATCATAATTGGCTGTTTGCATTGGGAAACATGAAGTGGATGTTATC
129 TTGTTCTTGGTTAAAACCTATCATAATTGGATGTTTGAATTGGGAAACATGAAGTGGATGTTATC
* * * * *
8976297 CATTGACAAGGAAAAAGCATTTCAAGCTTATCGTGTCTTCGAAGCCTTGAAATGTTTTGTCAATG
194 CATTGACAAAGAAAAAGCATTT-AAGTTTATCATGTCTTCGAAGCCTTGAAATGATTTATCAATG
* * *
8976362 AATAATTATCATTTTAATAACATTTTAAGATCAATATTATGATAAATAATTCATTTATAATCTTA
258 AATAATTATCATTTTAATAACATTTTATGATCAATATTACGATATATAATTCATTTATAATCTTA
** * *
8976427 TAAATGATTATAAA-TAAAAATTAA-ATTAAAAATAAATCAAAAGTTTTGTTGTTCTTGGTTAAA
323 TAAATGATTATAAATTAAAAA--AATAACAAAAATAAATTAAAAGCTTTGTTGTTCTTGGTTAAA
* * * ** * *
8976490 ACTTATCGTGATTGGATGTTTGCATTATGAAATGTGAAGTGGATGCTATCTATTGACAAGGAAAG
386 ACCTATCCTAATTGGATGTTTGCATTGGGAAATGTGAAATGGATGCTATCCATTGACAAGGAAAG
* *
8976555 AGCATTTTAAGTTTATCATGCCTTTGAAAGCCTGGAATGATTTATCAATGAATAATTAT
451 AGCATTTTAAGTTTATCATGCCTTCGAAAGCATGGAATGATTTATCAATGAATAATTAT
8976614 TGTAACACCC
Statistics
Matches: 1021, Mismatches: 167, Indels: 79
0.81 0.13 0.06
Matches are distributed among these distances:
704 119 0.12
705 38 0.04
707 1 0.00
709 6 0.01
710 1 0.00
711 5 0.00
712 1 0.00
713 5 0.00
715 24 0.02
716 212 0.21
717 171 0.17
718 321 0.31
719 113 0.11
720 4 0.00
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (704 bp):
AAATGATTTATCAATGAATAATTCTCATTTGATAACATTTTATCATCAACATTATGATATATAAT
TCATTTATAATCTTATGAATGATTATAAATAAAAAATGAATCAAAAATAAATCAAAGACTTTGTT
GTTCTTGGTTAAAACCTATCATAATTGGATGTTTGAATTGGGAAACATGAAGTGGATGTTATCCA
TTGACAAAGAAAAAGCATTTAAGTTTATCATGTCTTCGAAGCCTTGAAATGATTTATCAATGAAT
AATTATCATTTTAATAACATTTTATGATCAATATTACGATATATAATTCATTTATAATCTTATAA
ATGATTATAAATTAAAAAAATAACAAAAATAAATTAAAAGCTTTGTTGTTCTTGGTTAAAACCTA
TCCTAATTGGATGTTTGCATTGGGAAATGTGAAATGGATGCTATCCATTGACAAGGAAAGAGCAT
TTTAAGTTTATCATGCCTTCGAAAGCATGGAATGATTTATCAATGAATAATTATCATTTGATAAC
ATTTTATCACCAATAATATCAAACATAATTCAATTATAAACTTATAAATAAAAATAAAATCAAAG
CTTCATTGTTCTTGATTAAAACTTAACATAATTGAATTATTGCATTAGAAAACATGAAGTGGAAG
CTATTCATTGACAAGGAAACAACACTGTAATCTTATTATGCCTTCAAAAGCTTC
Found at i:8985706 original size:2 final size:2
Alignment explanation
Indices: 8985699--8985727 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8985689 TCCTTCTCGT
8985699 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
8985728 ACACAGTTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:8989654 original size:37 final size:37
Alignment explanation
Indices: 8989599--8989717 Score: 168
Period size: 37 Copynumber: 3.2 Consensus size: 37
8989589 AAATGTTGTG
*
8989599 TGATGATGTT-GAAATGTGCGAGTAGGGAGTGCACACA
1 TGATGATGTTAG-AGTGTGCGAGTAGGGAGTGCACACA
*
8989636 TGATGATGTTAGAGTGTGCGAGTAGGGAGTGCACATA
1 TGATGATGTTAGAGTGTGCGAGTAGGGAGTGCACACA
* * *
8989673 TGATGATGTTAAAGTGTGCGAGTAGGGAGCGCACGCA
1 TGATGATGTTAGAGTGTGCGAGTAGGGAGTGCACACA
*
8989710 TGGTGATG
1 TGATGATG
8989718 ATATTGCATT
Statistics
Matches: 74, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
37 73 0.99
38 1 0.01
ACGTcount: A:0.27, C:0.10, G:0.38, T:0.25
Consensus pattern (37 bp):
TGATGATGTTAGAGTGTGCGAGTAGGGAGTGCACACA
Found at i:8989782 original size:2 final size:2
Alignment explanation
Indices: 8989777--8989803 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8989767 TATATATATA
8989777 TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG T
8989804 TATAGAAAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:8997108 original size:17 final size:19
Alignment explanation
Indices: 8997067--8997108 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
8997057 ATGTATATAT
8997067 ATGAATATATGTTGTGCATTG
1 ATGAATATATGTTGTG-A-TG
8997088 ATGAATA-ATGTTGTG-TG
1 ATGAATATATGTTGTGATG
8997105 ATGA
1 ATGA
8997109 TGTTGAAGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
17 6 0.29
20 8 0.38
21 7 0.33
ACGTcount: A:0.31, C:0.02, G:0.26, T:0.40
Consensus pattern (19 bp):
ATGAATATATGTTGTGATG
Found at i:8997145 original size:37 final size:36
Alignment explanation
Indices: 8997103--8997211 Score: 148
Period size: 37 Copynumber: 2.9 Consensus size: 36
8997093 TAATGTTGTG
8997103 TGATGATGTTGAAGTGTGCGAGTAGGGAGTGCACACA
1 TGATGATGTT-AAGTGTGCGAGTAGGGAGTGCACACA
** *
8997140 TGATGATGTTAGAGTGTATGAGTAGGGAGTACACACA
1 TGATGATGTTA-AGTGTGCGAGTAGGGAGTGCACACA
8997177 T-ATTGATGTTAAAGTGTGCGAGTAGGGAGTGCACA
1 TGA-TGATGTT-AAGTGTGCGAGTAGGGAGTGCACA
8997212 TGTCATGGGG
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
36 2 0.03
37 60 0.95
38 1 0.02
ACGTcount: A:0.29, C:0.09, G:0.35, T:0.27
Consensus pattern (36 bp):
TGATGATGTTAAGTGTGCGAGTAGGGAGTGCACACA
Found at i:9002275 original size:38 final size:39
Alignment explanation
Indices: 9002217--9002319 Score: 118
Period size: 38 Copynumber: 2.6 Consensus size: 39
9002207 ATAGTGCCCG
* * * *
9002217 TGTGCACAATGTGGGCGGATGCACGCGATGGCACTAAC-
1 TGTGCACGATGTGGGGGGATGCACACGATGACACTAACA
* * **
9002255 TGTGCACGATATGGGGGGATGCACACGATGACTCTGGCTA
1 TGTGCACGATGTGGGGGGATGCACACGATGACACTAAC-A
9002295 TGTGCACGATGTGGGGGGATGCACA
1 TGTGCACGATGTGGGGGGATGCACA
9002320 TGAGCTTGGT
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
38 30 0.56
40 24 0.44
ACGTcount: A:0.22, C:0.20, G:0.37, T:0.20
Consensus pattern (39 bp):
TGTGCACGATGTGGGGGGATGCACACGATGACACTAACA
Found at i:9002372 original size:10 final size:10
Alignment explanation
Indices: 9002357--9002381 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
9002347 GGTGTTTATC
9002357 TATGTATATA
1 TATGTATATA
9002367 TATGTATATA
1 TATGTATATA
9002377 TATGT
1 TATGT
9002382 TTATGAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (10 bp):
TATGTATATA
Found at i:9002729 original size:21 final size:21
Alignment explanation
Indices: 9002703--9002743 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
9002693 TGGCCACTTA
9002703 AATCTCAATGTAGTGAGAAAG
1 AATCTCAATGTAGTGAGAAAG
**
9002724 AATCTCGCTGTAGTGAGAAA
1 AATCTCAATGTAGTGAGAAA
9002744 CTTTCTCCCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.39, C:0.12, G:0.24, T:0.24
Consensus pattern (21 bp):
AATCTCAATGTAGTGAGAAAG
Found at i:9004862 original size:13 final size:13
Alignment explanation
Indices: 9004844--9004868 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9004834 TTCTAGAAAA
9004844 TTTATAAAATCAT
1 TTTATAAAATCAT
9004857 TTTATAAAATCA
1 TTTATAAAATCA
9004869 CAATTTCTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTATAAAATCAT
Found at i:9009877 original size:5 final size:5
Alignment explanation
Indices: 9009869--9009901 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
9009859 ACCTAACCTG
*
9009869 ACTTA ACTTA AC-TA AGTTA ACTTA ACTTA ACTT
1 ACTTA ACTTA ACTTA ACTTA ACTTA ACTTA ACTT
9009902 GAGCCACGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
4 3 0.12
5 22 0.88
ACGTcount: A:0.39, C:0.18, G:0.03, T:0.39
Consensus pattern (5 bp):
ACTTA
Found at i:9021586 original size:11 final size:11
Alignment explanation
Indices: 9021554--9021586 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
9021544 ATAAGTGAGG
*
9021554 AAATAATAATA
1 AAATAATAATT
9021565 AAATAATAATT
1 AAATAATAATT
9021576 AAATAATAATT
1 AAATAATAATT
9021587 TTTTTATCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATT
Found at i:9023805 original size:11 final size:11
Alignment explanation
Indices: 9023785--9023830 Score: 76
Period size: 11 Copynumber: 4.3 Consensus size: 11
9023775 TATGGCCGGC
9023785 CAAAGGAAGAA
1 CAAAGGAAGAA
*
9023796 CAAAGCAAGAA
1 CAAAGGAAGAA
9023807 CAAAGGAAGAA
1 CAAAGGAAGAA
9023818 -AAAGGAAGAA
1 CAAAGGAAGAA
9023828 CAA
1 CAA
9023831 GAACCCTCGG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
10 10 0.31
11 22 0.69
ACGTcount: A:0.65, C:0.11, G:0.24, T:0.00
Consensus pattern (11 bp):
CAAAGGAAGAA
Found at i:9023813 original size:22 final size:21
Alignment explanation
Indices: 9023785--9023830 Score: 74
Period size: 21 Copynumber: 2.1 Consensus size: 21
9023775 TATGGCCGGC
9023785 CAAAGGAAGAACAAAGCAAGAA
1 CAAAGGAAGAA-AAAGCAAGAA
*
9023807 CAAAGGAAGAAAAAGGAAGAA
1 CAAAGGAAGAAAAAGCAAGAA
9023828 CAA
1 CAA
9023831 GAACCCTCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 12 0.52
22 11 0.48
ACGTcount: A:0.65, C:0.11, G:0.24, T:0.00
Consensus pattern (21 bp):
CAAAGGAAGAAAAAGCAAGAA
Found at i:9030119 original size:11 final size:13
Alignment explanation
Indices: 9030103--9030134 Score: 50
Period size: 11 Copynumber: 2.6 Consensus size: 13
9030093 TAATTGACAC
9030103 TTTTGAAAT-AG-
1 TTTTGAAATGAGT
9030114 TTTTGAAATGAGT
1 TTTTGAAATGAGT
9030127 TTTTGAAA
1 TTTTGAAA
9030135 ACCCAATGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 9 0.47
12 2 0.11
13 8 0.42
ACGTcount: A:0.34, C:0.00, G:0.19, T:0.47
Consensus pattern (13 bp):
TTTTGAAATGAGT
Found at i:9036936 original size:13 final size:13
Alignment explanation
Indices: 9036899--9036937 Score: 53
Period size: 12 Copynumber: 3.0 Consensus size: 13
9036889 CTGGCCGAGC
9036899 TTCCTTCTCTCTTT
1 TTCCTTCTCT-TTT
*
9036913 TTCTTTC-CTTTT
1 TTCCTTCTCTTTT
9036925 TTCCTTCTCTTTT
1 TTCCTTCTCTTTT
9036938 CTCTCCTTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 9 0.41
13 7 0.32
14 6 0.27
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (13 bp):
TTCCTTCTCTTTT
Found at i:9036936 original size:59 final size:60
Alignment explanation
Indices: 9036873--9036996 Score: 205
Period size: 60 Copynumber: 2.1 Consensus size: 60
9036863 TCCCTTTCTT
* *
9036873 TCTTTTCTCT-CTTGGTCTGGCCGAGCTTCCTTCTCTCTTTTTCTTTCCTTTTTTCCTTC
1 TCTTTTCTCTCCTTGGTCTGGCCGAACTCCCTTCTCTCTTTTTCTTTCCTTTTTTCCTTC
* *
9036932 TCTTTTCTCTCCTTGGTCTGGCCGAACTCCCTTCTCTCTTTTTCTTTCCTTTTTTCTTTT
1 TCTTTTCTCTCCTTGGTCTGGCCGAACTCCCTTCTCTCTTTTTCTTTCCTTTTTTCCTTC
9036992 TCTTT
1 TCTTT
9036997 CCCTCATTCT
Statistics
Matches: 60, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
59 10 0.17
60 50 0.83
ACGTcount: A:0.02, C:0.31, G:0.09, T:0.57
Consensus pattern (60 bp):
TCTTTTCTCTCCTTGGTCTGGCCGAACTCCCTTCTCTCTTTTTCTTTCCTTTTTTCCTTC
Found at i:9037006 original size:18 final size:18
Alignment explanation
Indices: 9036968--9037017 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
9036958 CTCCCTTCTC
* **
9036968 TCTTTTTCTTTCCTTTTT
1 TCTTTTTCTTTCCCTCAT
9036986 TCTTTTTCTTTCCCTCAT
1 TCTTTTTCTTTCCCTCAT
*
9037004 TCTCTTTCCTTTCC
1 TCT-TTTTCTTTCC
9037018 TTTCTCATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
18 18 0.67
19 9 0.33
ACGTcount: A:0.02, C:0.32, G:0.00, T:0.66
Consensus pattern (18 bp):
TCTTTTTCTTTCCCTCAT
Found at i:9037011 original size:24 final size:25
Alignment explanation
Indices: 9036984--9037045 Score: 69
Period size: 24 Copynumber: 2.6 Consensus size: 25
9036974 TCTTTCCTTT
9036984 TTTCTTTTTCTTTCCCTCA-TTC-TC
1 TTTC-TTTTCTTTCCCTCATTTCTTC
*
9037008 TTTCCTTTCCTTT--CTCATTTCTTC
1 TTT-CTTTTCTTTCCCTCATTTCTTC
9037032 TTTCTTTTCTTTCC
1 TTTCTTTTCTTTCC
9037046 GACTTGGTAG
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
22 4 0.13
23 11 0.35
24 15 0.48
25 1 0.03
ACGTcount: A:0.03, C:0.32, G:0.00, T:0.65
Consensus pattern (25 bp):
TTTCTTTTCTTTCCCTCATTTCTTC
Found at i:9037029 original size:23 final size:22
Alignment explanation
Indices: 9036985--9037044 Score: 58
Period size: 23 Copynumber: 2.9 Consensus size: 22
9036975 CTTTCCTTTT
9036985 TTCTT-TTTCTTTCC---CTCA
1 TTCTTCTTTCTTTCCTTTCTCA
9037003 TTC-TCTTTCCTTTCCTTTCTCA
1 TTCTTCTTT-CTTTCCTTTCTCA
*
9037025 TTTCTTCTTTCTTTTCTTTC
1 -TTCTTCTTTCTTTCCTTTC
9037045 CGACTTGGTA
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
17 1 0.03
18 6 0.18
19 6 0.18
22 4 0.12
23 12 0.35
24 5 0.15
ACGTcount: A:0.03, C:0.32, G:0.00, T:0.65
Consensus pattern (22 bp):
TTCTTCTTTCTTTCCTTTCTCA
Found at i:9057924 original size:35 final size:35
Alignment explanation
Indices: 9057850--9057926 Score: 91
Period size: 35 Copynumber: 2.2 Consensus size: 35
9057840 ACTCCGGTCG
* ** **
9057850 ATGATCTATTCTCCACCCGTTGCTTTGGCACGTTT
1 ATGATCTATTCTCCACCCGTTGCTTCGGCAAATGC
* *
9057885 ATGATCTATTGTCCACCCGTTGCTTCGGTAAATGC
1 ATGATCTATTCTCCACCCGTTGCTTCGGCAAATGC
9057920 ATGATCT
1 ATGATCT
9057927 TTTTCTTAGC
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.18, C:0.26, G:0.18, T:0.38
Consensus pattern (35 bp):
ATGATCTATTCTCCACCCGTTGCTTCGGCAAATGC
Found at i:9059240 original size:242 final size:243
Alignment explanation
Indices: 9058810--9059278 Score: 627
Period size: 242 Copynumber: 1.9 Consensus size: 243
9058800 TAAGCTTTGC
** ** * * * *
9058810 TGTTCTTTGTTAAAATGTATCATAATTGGATGTTTGTGTTGGGAAATGTGAAGTGGATGCTTTCC
1 TGTTCTTTGTTAAAATGTATCATAATTGGATGTTTGCATTGAAAAACGTGAAGTGCATCCTATCC
* * * *
9058875 ATTGACAAGGAAAGAGCATTTTAAGTTTCTCATGCCTTCAAAAGCTTGAAATTATTTACAAATGA
66 ATTGACAAAGAAAGAGCATTTTAAGTTTATCATGCCTTCAAAAGCTTGAAATGATTTACAAATAA
* * *** * ** *
9058940 ATAATGATCGTTTTGATAGTGTTTTATCATCAATATTATGATATATATTTTGTTTATAATCTTGT
131 ACAATGATCATTTTGATAACATTTTATCATCAATATTATGATATATAATTCATTTATAATCTTAT
9059005 AAATGAGTATAAATAAAAAATAAATCAAAAGTAAGTTCAAACCTTTTT
196 AAATGAGTATAAATAAAAAATAAATCAAAAGTAAGTTCAAACCTTTTT
9059053 TGTTCTTTGTTAAAACT-TATCATAATTGGATGTTTGCATTGAAAAACGTGAAGTGCA-CCTATC
1 TGTTCTTTGTTAAAA-TGTATCATAATTGGATGTTTGCATTGAAAAACGTGAAGTGCATCCTATC
* **
9059116 CATTGACAAAGAAAGAGCATTTTAAGTTTATCATGCCTTCGAAAGCTTGAAATGATTTATGAATA
65 CATTGACAAAGAAAGAGCATTTTAAGTTTATCATGCCTTCAAAAGCTTGAAATGATTTACAAATA
* * * *
9059181 AACAATTATCATTTTGATAACATTTTATCATGAATATTATGTTATATAATTCATTTATAATTTTA
130 AACAATGATCATTTTGATAACATTTTATCATCAATATTATGATATATAATTCATTTATAATCTTA
* ** *
9059246 TAAATGATTATAAATTGAAAATACATCAAAAGT
195 TAAATGAGTATAAATAAAAAATAAATCAAAAGT
9059279 TTTGCTGTTC
Statistics
Matches: 193, Mismatches: 32, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
242 143 0.74
243 49 0.25
244 1 0.01
ACGTcount: A:0.37, C:0.10, G:0.14, T:0.39
Consensus pattern (243 bp):
TGTTCTTTGTTAAAATGTATCATAATTGGATGTTTGCATTGAAAAACGTGAAGTGCATCCTATCC
ATTGACAAAGAAAGAGCATTTTAAGTTTATCATGCCTTCAAAAGCTTGAAATGATTTACAAATAA
ACAATGATCATTTTGATAACATTTTATCATCAATATTATGATATATAATTCATTTATAATCTTAT
AAATGAGTATAAATAAAAAATAAATCAAAAGTAAGTTCAAACCTTTTT
Found at i:9059700 original size:16 final size:16
Alignment explanation
Indices: 9059666--9059699 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
9059656 GAAATCAAAA
9059666 TTTGAATTTTGATTCT
1 TTTGAATTTTGATTCT
*
9059682 TTTGGATTTTGATT-T
1 TTTGAATTTTGATTCT
9059697 TTT
1 TTT
9059700 TAATATTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.15, C:0.03, G:0.15, T:0.68
Consensus pattern (16 bp):
TTTGAATTTTGATTCT
Found at i:9062296 original size:42 final size:42
Alignment explanation
Indices: 9062249--9062370 Score: 138
Period size: 42 Copynumber: 2.9 Consensus size: 42
9062239 TGTGGACCTT
* * * *
9062249 GCTATGTGCGAGTAGGAGTGTGCATAAGGCGATGATGACTCG
1 GCTATGTGCAAGTAGGAGTGCGCATAAGCCGATGATGACCCG
* * *
9062291 GCTATGTGCAAGTA-CACGTGCACATAAGCCAATGATGACCCG
1 GCTATGTGCAAGTAGGA-GTGCGCATAAGCCGATGATGACCCG
* * *
9062333 GCTATGTGTAAGTGGGAGTGCGTATAAGCCGATGATGA
1 GCTATGTGCAAGTAGGAGTGCGCATAAGCCGATGATGA
9062371 TCCAGCCATG
Statistics
Matches: 65, Mismatches: 13, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
41 1 0.02
42 63 0.97
43 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.33, T:0.23
Consensus pattern (42 bp):
GCTATGTGCAAGTAGGAGTGCGCATAAGCCGATGATGACCCG
Done.