Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26303135
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.30
Warning! 1968672 characters in sequence are not A, C, G, or T
File 31 of 66
Found at i:10669170 original size:54 final size:53
Alignment explanation
Indices: 10669105--10669268 Score: 229
Period size: 54 Copynumber: 3.0 Consensus size: 53
10669095 AAACGATGAC
* *
10669105 TCCGGCTATGTGCATGATGTAGGCGGATGCACATGAGCTGGGTGAGACGGGGTG
1 TCCGACTATGTGCACGATGTAGG-GGATGCACATGAGCTGGGTGAGACGGGGTG
* * * *
10669159 TCCGACTATGTGCACAATGTGGGGGGATGCACATGAGCTGGGTCAGACGAGGTG
1 TCCGACTATGTGCACGATGT-AGGGGATGCACATGAGCTGGGTGAGACGGGGTG
*
10669213 TCCGACTATGTGCACGATGTAAGGGGATGCACATGAGCTGGGTGAGATGGTGGTG
1 TCCGACTATGTGCACGATGT-AGGGGATGCACATGAGCTGGGTGAGACGG-GGTG
10669268 T
1 T
10669269 ATGTGCTTAT
Statistics
Matches: 96, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
54 89 0.93
55 7 0.07
ACGTcount: A:0.21, C:0.16, G:0.40, T:0.23
Consensus pattern (53 bp):
TCCGACTATGTGCACGATGTAGGGGATGCACATGAGCTGGGTGAGACGGGGTG
Found at i:10669923 original size:2 final size:2
Alignment explanation
Indices: 10669916--10669955 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
10669906 TCATTTGTTA
* *
10669916 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10669956 TATGGTTGAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10670686 original size:68 final size:68
Alignment explanation
Indices: 10670453--10670779 Score: 286
Period size: 68 Copynumber: 4.9 Consensus size: 68
10670443 GCATGTTGGT
* * * * * * * *
10670453 ATGATGAATGCCATAAGATTATGTATATGATGTAAATTTCAGACACCATATGAGATGATCAAGTA
1 ATGATTAATGCCATGAGAATATGTATATGATGTAAATTCCATATACCACATGAGATGATTAAGTA
10670518 TGC
66 TGC
* * * * * * * *
10670521 ATGATGT-ATACTAT-AGGATGGTGTATATGTTATAAATTCCATATACCATATGAGGTGATTAAG
1 ATGAT-TAATGCCATGAGAAT-ATGTATATGATGTAAATTCCATATACCACATGAGATGATTAAG
10670584 TATGC
64 TATGC
* * * * * *
10670589 ATGATTAATGCCATGAGAATATGGATATGATTTATATTCCACATACTACATGAGACGATTAAGTA
1 ATGATTAATGCCATGAGAATATGTATATGATGTAAATTCCATATACCACATGAGATGATTAAGTA
10670654 TGC
66 TGC
* * * ** * *
10670657 ATGATTAATGCCATGAGAATATGTATATGATGTATATTTCATATACTACATGAGCGGATTGAGCA
1 ATGATTAATGCCATGAGAATATGTATATGATGTAAATTCCATATACCACATGAGATGATTAAGTA
*
10670722 AGC
66 TGC
* * * **
10670725 AT-A--AATGTCATGAGATTATGTTTATGATGTAAATTCCATATACCGTATGAGATGA
1 ATGATTAATGCCATGAGAATATGTATATGATGTAAATTCCATATACCACATGAGATGA
10670780 GTGAGCATGT
Statistics
Matches: 210, Mismatches: 45, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
65 42 0.20
67 5 0.02
68 159 0.76
69 4 0.02
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (68 bp):
ATGATTAATGCCATGAGAATATGTATATGATGTAAATTCCATATACCACATGAGATGATTAAGTA
TGC
Found at i:10674631 original size:15 final size:16
Alignment explanation
Indices: 10674611--10674640 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
10674601 GAATTTGATC
10674611 AAGATTT-TAAAGGTA
1 AAGATTTCTAAAGGTA
10674626 AAGATTTCTAAAGGT
1 AAGATTTCTAAAGGT
10674641 TTATATAAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.43, C:0.03, G:0.20, T:0.33
Consensus pattern (16 bp):
AAGATTTCTAAAGGTA
Found at i:10677508 original size:24 final size:23
Alignment explanation
Indices: 10677481--10677527 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
10677471 CTTAGACATG
10677481 AAAACATGTTTGGTCTTAATTTAA
1 AAAACATGTTT-GTCTTAATTTAA
* *
10677505 AAAATATGTTTGTTTTAATTTAA
1 AAAACATGTTTGTCTTAATTTAA
10677528 GATAAGAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.38, C:0.04, G:0.11, T:0.47
Consensus pattern (23 bp):
AAAACATGTTTGTCTTAATTTAA
Found at i:10677787 original size:17 final size:17
Alignment explanation
Indices: 10677765--10677797 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
10677755 ATAATAATAA
10677765 AATAA-GAGTTATTATTC
1 AATAAGGAGTT-TTATTC
10677782 AATAAGGAGTTTTATT
1 AATAAGGAGTTTTATT
10677798 TTATCAAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.39, C:0.03, G:0.15, T:0.42
Consensus pattern (17 bp):
AATAAGGAGTTTTATTC
Found at i:10680509 original size:27 final size:25
Alignment explanation
Indices: 10680484--10680531 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
10680474 CATTATACGT
* *
10680484 GGCAAGGCCACAGGTTGTTATATAC
1 GGCAAGGCCACAAGTTGATATATAC
*
10680509 GGCTAGGCCACAAGTTGATATAT
1 GGCAAGGCCACAAGTTGATATAT
10680532 GCGGTTGTGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (25 bp):
GGCAAGGCCACAAGTTGATATATAC
Found at i:10683529 original size:23 final size:21
Alignment explanation
Indices: 10683473--10683532 Score: 59
Period size: 24 Copynumber: 2.6 Consensus size: 21
10683463 TGAAAATTCA
10683473 AGGTTTTTGCTGCTAAATTTTG
1 AGGTTTTTGCTGC-AAATTTTG
10683495 AGGTTATGTTGCTAG-AAATTTTTGG
1 AGGTT-T-TTGCT-GCAAA-TTTT-G
10683520 AGGTTTTTGCTGC
1 AGGTTTTTGCTGC
10683533 CATTGAAGGA
Statistics
Matches: 32, Mismatches: 0, Indels: 11
0.74 0.00 0.26
Matches are distributed among these distances:
22 6 0.19
23 9 0.28
24 10 0.31
25 7 0.22
ACGTcount: A:0.18, C:0.08, G:0.27, T:0.47
Consensus pattern (21 bp):
AGGTTTTTGCTGCAAATTTTG
Found at i:10691156 original size:4 final size:4
Alignment explanation
Indices: 10691147--10691196 Score: 59
Period size: 4 Copynumber: 12.5 Consensus size: 4
10691137 TTTCTCTCTT
*
10691147 TTTC TTTC TTTC TTTC TTTCC TTTC TTT- TCTC TTT- TCTTC TTTC TTTC
1 TTTC TTTC TTTC TTTC TTT-C TTTC TTTC TTTC TTTC T-TTC TTTC TTTC
10691195 TT
1 TT
10691197 CCCCTTTCTC
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
3 3 0.08
4 32 0.80
5 5 0.12
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTC
Found at i:10691204 original size:28 final size:31
Alignment explanation
Indices: 10691141--10691209 Score: 81
Period size: 32 Copynumber: 2.2 Consensus size: 31
10691131 CCCTCATTTC
*
10691141 TCTCTTTTTCTTTCTTTCTTTCTTTCCTTTCTTT
1 TCTC-TTTTCTTTCTTTCTTTCTTTCC--TCCTT
10691175 TCTCTTTTC-TTCTTTCTTTC-TTCC-CCTT
1 TCTCTTTTCTTTCTTTCTTTCTTTCCTCCTT
10691203 TCTCTTT
1 TCTCTTT
10691210 CCTCTTTGGC
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
28 10 0.29
31 4 0.12
32 11 0.32
33 5 0.15
34 4 0.12
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (31 bp):
TCTCTTTTCTTTCTTTCTTTCTTTCCTCCTT
Found at i:10691337 original size:21 final size:21
Alignment explanation
Indices: 10691311--10691350 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
10691301 CAATGTTTGC
10691311 CTTTTTCCTTAT-TTTTCTTTT
1 CTTTTTCCTT-TGTTTTCTTTT
*
10691332 CTTTTTTCTTTGTTTTCTT
1 CTTTTTCCTTTGTTTTCTT
10691351 ACCATGGGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.03, C:0.17, G:0.03, T:0.78
Consensus pattern (21 bp):
CTTTTTCCTTTGTTTTCTTTT
Found at i:10695145 original size:19 final size:18
Alignment explanation
Indices: 10695123--10695170 Score: 69
Period size: 19 Copynumber: 2.6 Consensus size: 18
10695113 TTAATATTTT
10695123 AATATTATTTTATTCATAA
1 AATATTATTTTATTC-TAA
*
10695142 AATATTATTTCATTCTAA
1 AATATTATTTTATTCTAA
*
10695160 AATATTCTTTT
1 AATATTATTTT
10695171 TGCTTGTCAC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 12 0.46
19 14 0.54
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (18 bp):
AATATTATTTTATTCTAA
Found at i:10695162 original size:18 final size:19
Alignment explanation
Indices: 10695123--10695165 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
10695113 TTAATATTTT
*
10695123 AATATTATTTTATTCATAA
1 AATATTATTTCATTCATAA
10695142 AATATTATTTCATTC-TAA
1 AATATTATTTCATTCATAA
10695160 AATATT
1 AATATT
10695166 CTTTTTGCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 9 0.39
19 14 0.61
ACGTcount: A:0.42, C:0.07, G:0.00, T:0.51
Consensus pattern (19 bp):
AATATTATTTCATTCATAA
Found at i:10698889 original size:5 final size:5
Alignment explanation
Indices: 10698881--10698910 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
10698871 TTTCTTTTGC
*
10698881 TTCTT TTCTT TTCAT TTCTT TTCTT TTCTT
1 TTCTT TTCTT TTCTT TTCTT TTCTT TTCTT
10698911 ACTTCTTTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.03, C:0.20, G:0.00, T:0.77
Consensus pattern (5 bp):
TTCTT
Found at i:10699889 original size:55 final size:52
Alignment explanation
Indices: 10699782--10699921 Score: 171
Period size: 55 Copynumber: 2.7 Consensus size: 52
10699772 TAACAACACG
* * *
10699782 TGTGCGGCGTGGGAGTGCACAT--GCTGGTGA-TGACGAGTAATTCCAGCTA
1 TGTGCGGTGTGGGAGTGCACATGAGCTGATGACCGACGAGTAATTCCAGCTA
*
10699831 TGTGCGGTGTGGGAGTGCACATGAGCTGATGACCGACGGGTGATGATTCCAAG-TA
1 TGTGCGGTGTGGGAGTGCACATGAGCTGATGACCGACGAGT-A--ATTCC-AGCTA
*
10699886 TGTGCAGTGTGGGAGTGCACATGAGCTGATGACCGA
1 TGTGCGGTGTGGGAGTGCACATGAGCTGATGACCGA
10699922 TGGTTGTATA
Statistics
Matches: 79, Mismatches: 5, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
49 21 0.27
51 7 0.09
52 6 0.08
53 1 0.01
55 42 0.53
56 2 0.03
ACGTcount: A:0.21, C:0.17, G:0.38, T:0.24
Consensus pattern (52 bp):
TGTGCGGTGTGGGAGTGCACATGAGCTGATGACCGACGAGTAATTCCAGCTA
Found at i:10700431 original size:2 final size:2
Alignment explanation
Indices: 10700424--10700477 Score: 74
Period size: 2 Copynumber: 26.0 Consensus size: 2
10700414 TTGGGAACGT
10700424 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CTA CT- TNA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA -TA T-A TA TA
10700466 TA TA TA TA TA TA
1 TA TA TA TA TA TA
10700478 CACTTGGTTC
Statistics
Matches: 49, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
1 1 0.02
2 43 0.88
3 5 0.10
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:10700798 original size:19 final size:19
Alignment explanation
Indices: 10700776--10700814 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
10700766 ACAAGTGGAA
10700776 AATTTTAAAACAAAATAAT
1 AATTTTAAAACAAAATAAT
** *
10700795 AATTTTTGAATAAAATAAT
1 AATTTTAAAACAAAATAAT
10700814 A
1 A
10700815 TTAAAATAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.36
Consensus pattern (19 bp):
AATTTTAAAACAAAATAAT
Found at i:10703503 original size:25 final size:25
Alignment explanation
Indices: 10703474--10703529 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
10703464 TCGCAACCAT
* *
10703474 GTATATCAACTCATGGCCTTGTCAC
1 GTATAACAACTCATGGCCTTGCCAC
*
10703499 GTATAACAACTCATGGCCTTGCCAT
1 GTATAACAACTCATGGCCTTGCCAC
10703524 GTATAA
1 GTATAA
10703530 TCACAGATCG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (25 bp):
GTATAACAACTCATGGCCTTGCCAC
Found at i:10703949 original size:2 final size:2
Alignment explanation
Indices: 10703937--10704080 Score: 117
Period size: 2 Copynumber: 71.0 Consensus size: 2
10703927 AGCACTTTAC
* * * *
10703937 AT AT AT GT AT AT AT AT AT AT AT AC AT AC AT AC AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* ** ** ** * *
10703979 AT AT AT AT AT ANN NN NN NN NT AT AT AT AT AT AT AT ACT AT AC AT
1 AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT
* * * *
10704023 AC AT AT AT AT AT AT AT AT AT AT AT AC AT AC AT AC AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10704065 AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT
10704081 TCTACGCAAA
Statistics
Matches: 118, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
2 116 0.98
3 2 0.02
ACGTcount: A:0.46, C:0.06, G:0.01, T:0.41
Consensus pattern (2 bp):
AT
Found at i:10706626 original size:34 final size:35
Alignment explanation
Indices: 10706587--10706833 Score: 175
Period size: 34 Copynumber: 6.9 Consensus size: 35
10706577 CAAGGCAATA
*
10706587 TATCATCAGT-GTGTGCACTCACACAGCACACCAC
1 TATCATCAGTCATGTGCACTCACACAGCACACCAC
* *
10706621 TATCAT-TGTCATGTGCACTCACATAGCACACCAC
1 TATCATCAGTCATGTGCACTCACACAGCACACCAC
* * * * * *
10706655 TATCAT-TGTCATGTACACTCTCATACCGCACATGGCATA
1 TATCATCAGTCATGTGCA--CTCACACAGCACA--CCA-C
*
10706694 TATCATCAGT-GTGTGCACTCACACAGCACACCAC
1 TATCATCAGTCATGTGCACTCACACAGCACACCAC
* * * *
10706728 TATCACCA-TCATGTGCACTCCCACACCGCAGACGACATA
1 TATCATCAGTCATGTGCACT--CACACAGCACAC--CA-C
* *
10706767 TATCATCAGT-GTGTGCACTCACACAGCACACCAT
1 TATCATCAGTCATGTGCACTCACACAGCACACCAC
* *
10706801 TATCATC-GTCATGTGTACTTCCACACCGCACAC
1 TATCATCAGTCATGTGCAC-T-CACACAGCACAC
10706834 GCACGGTTAC
Statistics
Matches: 167, Mismatches: 29, Indels: 32
0.73 0.13 0.14
Matches are distributed among these distances:
33 5 0.03
34 72 0.43
35 5 0.03
36 31 0.19
37 21 0.13
38 4 0.02
39 26 0.16
40 3 0.02
ACGTcount: A:0.29, C:0.34, G:0.13, T:0.24
Consensus pattern (35 bp):
TATCATCAGTCATGTGCACTCACACAGCACACCAC
Found at i:10706709 original size:73 final size:73
Alignment explanation
Indices: 10706632--10706834 Score: 280
Period size: 73 Copynumber: 2.8 Consensus size: 73
10706622 ATCATTGTCA
* * * * * *
10706632 TGTGCACTCACATAGCACACCACTATCATTGTCATGTACACTCTCATACCGCACATGGCATATAT
1 TGTGCACTCACACAGCACACCACTATCATCGTCATGTACACTCCCACACCGCACACGACATATAT
10706697 CATCAGTG
66 CATCAGTG
* * * *
10706705 TGTGCACTCACACAGCACACCACTATCACCATCATGTGCACTCCCACACCGCAGACGACATATAT
1 TGTGCACTCACACAGCACACCACTATCATCGTCATGTACACTCCCACACCGCACACGACATATAT
10706770 CATCAGTG
66 CATCAGTG
* ** *
10706778 TGTGCACTCACACAGCACACCATTATCATCGTCATGTGTACTTCCACACCGCACACG
1 TGTGCACTCACACAGCACACCACTATCATCGTCATGTACACTCCCACACCGCACACG
10706835 CACGGTTACA
Statistics
Matches: 114, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
73 114 1.00
ACGTcount: A:0.29, C:0.34, G:0.14, T:0.23
Consensus pattern (73 bp):
TGTGCACTCACACAGCACACCACTATCATCGTCATGTACACTCCCACACCGCACACGACATATAT
CATCAGTG
Found at i:10706805 original size:107 final size:106
Alignment explanation
Indices: 10706584--10706807 Score: 238
Period size: 107 Copynumber: 2.1 Consensus size: 106
10706574 GCTCAAGGCA
*** *
10706584 ATATATCATCAGTGTGTGCACTCACACAGCACACCACTATCATTGTCATGTGCACTCACATAGCA
1 ATATATCATCAGTGTGTGCACTCACACAGCACACCACTATCACCATCATGTGCACTCACACAGCA
** * * * *
10706649 CACCACTATCATTGTCATGTACACTCTCATACCGCACATGGC
66 CACCACTATCATCATCATGTACACACTCACACAGCACA-GCC
*
10706691 ATATATCATCAGTGTGTGCACTCACACAGCACACCACTATCACCATCATGTGCACTCCCACACCG
1 ATATATCATCAGTGTGTGCACTCACACAGCACACCACTATCACCATCATGTGCACT--CACACAG
* * ***
10706756 CAGACGACATAT-ATCATCAGTGTGTGCACTCACACAGCACA-CC
64 CACACCAC-TATCATCATCA-TGTACACACTCACACAGCACAGCC
10706799 AT-TATCATC
1 ATATATCATC
10706808 GTCATGTGTA
Statistics
Matches: 97, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
107 60 0.62
108 3 0.03
109 16 0.16
110 18 0.19
ACGTcount: A:0.30, C:0.33, G:0.13, T:0.24
Consensus pattern (106 bp):
ATATATCATCAGTGTGTGCACTCACACAGCACACCACTATCACCATCATGTGCACTCACACAGCA
CACCACTATCATCATCATGTACACACTCACACAGCACAGCC
Found at i:10707630 original size:5 final size:5
Alignment explanation
Indices: 10707620--10707661 Score: 50
Period size: 5 Copynumber: 8.4 Consensus size: 5
10707610 AGGAGGAAGT
* *
10707620 AAGAA AAGAA AAGAA AAGAA AA-CA AGGAA AAGAA AATGAA AA
1 AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA AA-GAA AA
10707662 ATCTTGATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
4 2 0.06
5 24 0.77
6 5 0.16
ACGTcount: A:0.76, C:0.02, G:0.19, T:0.02
Consensus pattern (5 bp):
AAGAA
Found at i:10709882 original size:39 final size:39
Alignment explanation
Indices: 10709828--10709914 Score: 131
Period size: 39 Copynumber: 2.2 Consensus size: 39
10709818 AATCTCGCTG
* *
10709828 CAGC-AAATTGTAACCCAGAAACAGAAAGTTTCTCACTA
1 CAGCAAAATTGCAACCCAAAAACAGAAAGTTTCTCACTA
*
10709866 CAGCAAAATTGCAACCCAAAAACAGAAAGTTTCTCACTG
1 CAGCAAAATTGCAACCCAAAAACAGAAAGTTTCTCACTA
10709905 CAGCGAAAAT
1 CAGC-AAAAT
10709915 GAATTTCGCT
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
38 4 0.09
39 35 0.80
40 5 0.11
ACGTcount: A:0.44, C:0.24, G:0.14, T:0.18
Consensus pattern (39 bp):
CAGCAAAATTGCAACCCAAAAACAGAAAGTTTCTCACTA
Found at i:10713384 original size:43 final size:43
Alignment explanation
Indices: 10713310--10713418 Score: 121
Period size: 43 Copynumber: 2.5 Consensus size: 43
10713300 CCCTCCACAC
* * * *
10713310 TCAGCTCATGTGCACTCCCTAC-TCGCACATAGCCAGGTCATCA
1 TCAGATCATGGGCACTCCC-ACACCGCTCATAGCCAGGTCATCA
* *
10713353 TCAGATCATGGGCACTCTCACACCGCTCATAGCTAGGTCATCA
1 TCAGATCATGGGCACTCCCACACCGCTCATAGCCAGGTCATCA
* * *
10713396 TTAGCTCATGTGCACTCCCACAC
1 TCAGATCATGGGCACTCCCACAC
10713419 AAAAGGAGCA
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 2 0.04
43 53 0.96
ACGTcount: A:0.24, C:0.36, G:0.17, T:0.24
Consensus pattern (43 bp):
TCAGATCATGGGCACTCCCACACCGCTCATAGCCAGGTCATCA
Found at i:10714247 original size:21 final size:21
Alignment explanation
Indices: 10714222--10714262 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
10714212 GAAGAAGAAT
*
10714222 AAGAAGCTGCTGGAAAATGAG
1 AAGAAGCTGCTGAAAAATGAG
* *
10714243 AAGAAGTTGCTTAAAAATGA
1 AAGAAGCTGCTGAAAAATGA
10714263 TATTTATAGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.46, C:0.07, G:0.27, T:0.20
Consensus pattern (21 bp):
AAGAAGCTGCTGAAAAATGAG
Found at i:10721099 original size:43 final size:43
Alignment explanation
Indices: 10721034--10721115 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 43
10721024 CACACTTAGG
* *
10721034 TCATGTGCACTCCCTACGCGCACTTAGCTAGGTCATCATCAGC
1 TCATGTGCACTCCCTACCCGCACATAGCTAGGTCATCATCAGC
*
10721077 TCATGTGCACTCCC-ACACCGCACATAGCTGGGTCATCAT
1 TCATGTGCACTCCCTAC-CCGCACATAGCTAGGTCATCAT
10721116 TATCACACAA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
42 2 0.06
43 33 0.94
ACGTcount: A:0.22, C:0.35, G:0.18, T:0.24
Consensus pattern (43 bp):
TCATGTGCACTCCCTACCCGCACATAGCTAGGTCATCATCAGC
Found at i:10726546 original size:22 final size:22
Alignment explanation
Indices: 10726521--10726562 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
10726511 TGAAAGATTT
*
10726521 TTGCTAAGCTTGGTAAAAGCCA
1 TTGCAAAGCTTGGTAAAAGCCA
*
10726543 TTGCAAAGCTTGGTGAAAGC
1 TTGCAAAGCTTGGTAAAAGC
10726563 TTGCGAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (22 bp):
TTGCAAAGCTTGGTAAAAGCCA
Found at i:10729162 original size:45 final size:45
Alignment explanation
Indices: 10729111--10729201 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
10729101 TTTAAGACTA
10729111 AGAAGATTGTAACTACATCTAGACCTCTTGAATTGCTACACATTG
1 AGAAGATTGTAACTACATCTAGACCTCTTGAATTGCTACACATTG
10729156 AGAAGATTGTAACTACATCTAGACCTCTTGAATTGCTACACATTG
1 AGAAGATTGTAACTACATCTAGACCTCTTGAATTGCTACACATTG
10729201 A
1 A
10729202 TCTATTTGGT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.31
Consensus pattern (45 bp):
AGAAGATTGTAACTACATCTAGACCTCTTGAATTGCTACACATTG
Found at i:10734577 original size:17 final size:17
Alignment explanation
Indices: 10734555--10734591 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
10734545 AACAAGATAT
10734555 GCACACACTAAGGGGGA
1 GCACACACTAAGGGGGA
* *
10734572 GCACACATTTAGGGGGA
1 GCACACACTAAGGGGGA
10734589 GCA
1 GCA
10734592 ATCCCCATTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.32, C:0.22, G:0.35, T:0.11
Consensus pattern (17 bp):
GCACACACTAAGGGGGA
Found at i:10738450 original size:42 final size:42
Alignment explanation
Indices: 10738389--10738567 Score: 268
Period size: 42 Copynumber: 4.3 Consensus size: 42
10738379 TGTTGATTTG
* *
10738389 GACCCGGCTATGTGTGAGTAGGAGCGCACATAAGCCGTTGCT
1 GACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCT
* *
10738431 GACCCAGCTATGTGCGAGTAGGAGTGCACATAAGCCATTGCT
1 GACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCT
* * *
10738473 GACTCGACTATGTGCGAGTAGGAGTGCACATAAGTCGTTGCT
1 GACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCT
* *
10738515 GACCCGGCTATGTGTGAGTGGGAGTGCACATAAGCCGTTGCT
1 GACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCT
*
10738557 GACCCGACTAT
1 GACCCGGCTAT
10738568 ATGCACATAA
Statistics
Matches: 122, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 122 1.00
ACGTcount: A:0.23, C:0.23, G:0.31, T:0.23
Consensus pattern (42 bp):
GACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCT
Found at i:10739848 original size:38 final size:38
Alignment explanation
Indices: 10739754--10739857 Score: 136
Period size: 38 Copynumber: 2.7 Consensus size: 38
10739744 CACCCTCGGC
* *
10739754 TCATGTACATCCCCCCACATCGTGCACATAGCCGGTGCCA
1 TCATGTACATCCCCCCACATCGTG--CATAACCAGTGCCA
* * * *
10739794 TCGTGTGCATCTCCCCACATCGTGCATAATCAGTGCCA
1 TCATGTACATCCCCCCACATCGTGCATAACCAGTGCCA
10739832 TCATGTACATCCCCCCACATCGTGCA
1 TCATGTACATCCCCCCACATCGTGCA
10739858 CACAAGCACT
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
38 34 0.62
40 21 0.38
ACGTcount: A:0.22, C:0.38, G:0.16, T:0.23
Consensus pattern (38 bp):
TCATGTACATCCCCCCACATCGTGCATAACCAGTGCCA
Found at i:10743213 original size:21 final size:21
Alignment explanation
Indices: 10743187--10743234 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
10743177 GACATAAGTC
10743187 TGAATCAAATATGATCATTGA
1 TGAATCAAATATGATCATTGA
*
10743208 TGAATCAAATATGATCATTGT
1 TGAATCAAATATGATCATTGA
10743229 TGAATC
1 TGAATC
10743235 TTGAGGGTCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.35
Consensus pattern (21 bp):
TGAATCAAATATGATCATTGA
Found at i:10750700 original size:26 final size:26
Alignment explanation
Indices: 10750671--10750729 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
10750661 ATTTTCTAGT
* *
10750671 TTTCCTTTGT-TTTTCTCTTTTCTTCC
1 TTTCCTTTCTATTTTCTCTCTTCTT-C
* *
10750697 TTTCCTCTCTATTTTCTCTCTTGTTC
1 TTTCCTTTCTATTTTCTCTCTTCTTC
10750723 TTTCCTT
1 TTTCCTT
10750730 ATGGCCGGCC
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
26 15 0.56
27 12 0.44
ACGTcount: A:0.02, C:0.29, G:0.03, T:0.66
Consensus pattern (26 bp):
TTTCCTTTCTATTTTCTCTCTTCTTC
Found at i:10750983 original size:30 final size:28
Alignment explanation
Indices: 10750949--10751010 Score: 70
Period size: 28 Copynumber: 2.1 Consensus size: 28
10750939 TTTTTGAAAT
* * *
10750949 TTACACTTTTGCCCCCATAAAAGTGAAAAA
1 TTACA-TTTTGACCCCA-AAAACTCAAAAA
*
10750979 TTACATTTTTACCCCAAAAACTCAAAAA
1 TTACATTTTGACCCCAAAAACTCAAAAA
10751007 TTAC
1 TTAC
10751011 CCATAGACAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 14 0.50
29 9 0.32
30 5 0.18
ACGTcount: A:0.42, C:0.24, G:0.05, T:0.29
Consensus pattern (28 bp):
TTACATTTTGACCCCAAAAACTCAAAAA
Found at i:10754095 original size:22 final size:22
Alignment explanation
Indices: 10754070--10754115 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
10754060 CACTGCAACC
10754070 AGAATACCTTTCCGCTGCAGCG
1 AGAATACCTTTCCGCTGCAGCG
* * *
10754092 AGAATGCCTTTTCGCTGTAGCG
1 AGAATACCTTTCCGCTGCAGCG
10754114 AG
1 AG
10754116 GACCGATTGC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.22, C:0.26, G:0.26, T:0.26
Consensus pattern (22 bp):
AGAATACCTTTCCGCTGCAGCG
Found at i:10754233 original size:13 final size:13
Alignment explanation
Indices: 10754215--10754239 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10754205 GTGATTTACT
10754215 CATGAGGGGTTTA
1 CATGAGGGGTTTA
10754228 CATGAGGGGTTT
1 CATGAGGGGTTT
10754240 TAATAAGAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.08, G:0.40, T:0.32
Consensus pattern (13 bp):
CATGAGGGGTTTA
Found at i:10757374 original size:28 final size:28
Alignment explanation
Indices: 10757313--10757395 Score: 103
Period size: 28 Copynumber: 2.9 Consensus size: 28
10757303 ATCAACATGG
*
10757313 ATGTCTAAATTAAGATAAAACATGTTTTC
1 ATGTCTAAATTAAGA-CAAACATGTTTTC
* **
10757342 TTGTCTAAATTAAGACAAGTATGTTTTC
1 ATGTCTAAATTAAGACAAACATGTTTTC
*
10757370 ATGTCTAAATTATGACAAAACATGTT
1 ATGTCTAAATTAAGAC-AAACATGTT
10757396 AAAGCTGTTA
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
28 24 0.53
29 21 0.47
ACGTcount: A:0.39, C:0.11, G:0.12, T:0.39
Consensus pattern (28 bp):
ATGTCTAAATTAAGACAAACATGTTTTC
Found at i:10760480 original size:68 final size:68
Alignment explanation
Indices: 10760287--10760519 Score: 243
Period size: 68 Copynumber: 3.4 Consensus size: 68
10760277 GTTGTGATGC
* * * * *
10760287 CATGTATATGATGTTATATCCACATACTATATGAGATAAGAACAAGCATAAGATAAATGCTA-AG
1 CATGTATGTGATGTTGTTTCCACATACTATATGAGATAAGAACAAGCAAAAGATATATGCTACA-
10760351 ATGA
65 ATGA
* * * * *
10760355 TAAGTATGTGATGTTGTTTCCACATACTATATGTGATAAGAACGAGCAAAAGTTATATGCTACAA
1 CATGTATGTGATGTTGTTTCCACATACTATATGAGATAAGAACAAGCAAAAGATATATGCTACAA
10760420 TGA
66 TGA
* * * * * * * * * **
10760423 CATGTATCTGATATTGTTTCCACATACTATGTGAGGTAAGGATAAGCACATGATATATGTTACGT
1 CATGTATGTGATGTTGTTTCCACATACTATATGAGATAAGAACAAGCAAAAGATATATGCTACAA
*
10760488 TGT
66 TGA
*
10760491 CATGTATGTGATTTTGTTTCCACATACTA
1 CATGTATGTGATGTTGTTTCCACATACTA
10760520 CAAGAGTATG
Statistics
Matches: 135, Mismatches: 29, Indels: 2
0.81 0.17 0.01
Matches are distributed among these distances:
68 134 0.99
69 1 0.01
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.34
Consensus pattern (68 bp):
CATGTATGTGATGTTGTTTCCACATACTATATGAGATAAGAACAAGCAAAAGATATATGCTACAA
TGA
Found at i:10761695 original size:28 final size:28
Alignment explanation
Indices: 10761639--10761696 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
10761629 ATTTTTGGAG
* *
10761639 CATAGGGGTAAAATGGTAATTTTGCCAC
1 CATAAGGGTAAAATGGTAATTTTGACAC
10761667 CATAAGGGTAAAATTGGTAATTTT-ACAC
1 CATAAGGGTAAAA-TGGTAATTTTGACAC
10761695 CA
1 CA
10761697 CCAACACTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
28 17 0.63
29 10 0.37
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (28 bp):
CATAAGGGTAAAATGGTAATTTTGACAC
Found at i:10761909 original size:31 final size:30
Alignment explanation
Indices: 10761871--10761932 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 30
10761861 AAAAATCAGC
10761871 CTATAAACCTCTCACTCCTCTCCAAATATT
1 CTATAAACCTCTCACTCCTCTCCAAATATT
*
10761901 NCTATAAACCTCTCACTTCTCTCCAAATATT
1 -CTATAAACCTCTCACTCCTCTCCAAATATT
10761932 C
1 C
10761933 GGCCAAGCAA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 1 0.03
31 29 0.97
ACGTcount: A:0.29, C:0.35, G:0.00, T:0.34
Consensus pattern (30 bp):
CTATAAACCTCTCACTCCTCTCCAAATATT
Found at i:10764732 original size:71 final size:72
Alignment explanation
Indices: 10764632--10764772 Score: 207
Period size: 71 Copynumber: 2.0 Consensus size: 72
10764622 ATTTATATGA
*
10764632 AAATGAGTAAAATGTAAAAAATGATGGCCTAAGTGCCCATATGAGCA-CGT-GGGTTGCATTACA
1 AAATGAGTAAAATGTAAAAAATGATGGCCTAAGAGCCCATATGAGCAGC-TAGGG-TGCATTACA
10764695 AAGTTGAGG
64 AAGTTGAGG
* * *
10764704 AAATGTGT-AAATGTGAAAAATGATGGCCTGAGAGCCCATATGAGCAGCTAGGGTGCATTACAAA
1 AAATGAGTAAAATGTAAAAAATGATGGCCTAAGAGCCCATATGAGCAGCTAGGGTGCATTACAAA
10764768 GTTGA
66 GTTGA
10764773 CATGAAATGT
Statistics
Matches: 63, Mismatches: 4, Indels: 5
0.88 0.06 0.07
Matches are distributed among these distances:
71 52 0.83
72 11 0.17
ACGTcount: A:0.37, C:0.13, G:0.27, T:0.23
Consensus pattern (72 bp):
AAATGAGTAAAATGTAAAAAATGATGGCCTAAGAGCCCATATGAGCAGCTAGGGTGCATTACAAA
GTTGAGG
Found at i:10766557 original size:13 final size:13
Alignment explanation
Indices: 10766539--10766584 Score: 51
Period size: 12 Copynumber: 3.6 Consensus size: 13
10766529 ATAATCAGAC
*
10766539 TGGAAAATTAAAA
1 TGGAAAATTGAAA
*
10766552 TGG-AAATGGAAA
1 TGGAAAATTGAAA
10766564 T-GAAAATTCGAAA
1 TGGAAAATT-GAAA
10766577 TGGAAAAT
1 TGGAAAAT
10766585 ATTGTTAGTG
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
11 1 0.04
12 12 0.44
13 8 0.30
14 6 0.22
ACGTcount: A:0.54, C:0.02, G:0.22, T:0.22
Consensus pattern (13 bp):
TGGAAAATTGAAA
Found at i:10766563 original size:19 final size:20
Alignment explanation
Indices: 10766539--10766584 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
10766529 ATAATCAGAC
* *
10766539 TGGAAAATTAAAA-TGGAAA
1 TGGAAAATGAAAATTCGAAA
10766558 TGG-AAATGAAAATTCGAAA
1 TGGAAAATGAAAATTCGAAA
10766577 TGGAAAAT
1 TGGAAAAT
10766585 ATTGTTAGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 8 0.35
19 11 0.48
20 4 0.17
ACGTcount: A:0.54, C:0.02, G:0.22, T:0.22
Consensus pattern (20 bp):
TGGAAAATGAAAATTCGAAA
Found at i:10772390 original size:19 final size:19
Alignment explanation
Indices: 10772366--10772403 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
10772356 AATGCAAGGA
10772366 TTAAATTCATATAAAGATT
1 TTAAATTCATATAAAGATT
10772385 TTAAATTCATATAAAGATT
1 TTAAATTCATATAAAGATT
10772404 GTAAGTTGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.05, G:0.05, T:0.42
Consensus pattern (19 bp):
TTAAATTCATATAAAGATT
Found at i:10772993 original size:28 final size:28
Alignment explanation
Indices: 10772933--10772991 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 28
10772923 TGTGCTATTT
*
10772933 TTTATTTTTAGTGCATATTAAATATTTA
1 TTTATTTTTAGTGCATATTAAATAATTA
*
10772961 TTTATTTATTATGTGCAT-TTAATTAATTA
1 TTTATTT-TTA-GTGCATATTAAATAATTA
10772990 TT
1 TT
10772992 ATAAATATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
28 7 0.26
29 14 0.52
30 6 0.22
ACGTcount: A:0.31, C:0.03, G:0.07, T:0.59
Consensus pattern (28 bp):
TTTATTTTTAGTGCATATTAAATAATTA
Found at i:10775475 original size:10 final size:10
Alignment explanation
Indices: 10775460--10775487 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
10775450 ATTATGGTAG
10775460 ACATGACACA
1 ACATGACACA
10775470 ACATGACACA
1 ACATGACACA
10775480 ACATGACA
1 ACATGACA
10775488 ACAAAAGAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.50, C:0.29, G:0.11, T:0.11
Consensus pattern (10 bp):
ACATGACACA
Found at i:10790218 original size:20 final size:20
Alignment explanation
Indices: 10790193--10790234 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
10790183 GATTTGGAGA
10790193 TAAGATACAAAATTAGGTGT
1 TAAGATACAAAATTAGGTGT
10790213 TAAGATACAAAATTAGGTGT
1 TAAGATACAAAATTAGGTGT
10790233 TA
1 TA
10790235 GACACCTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.45, C:0.05, G:0.19, T:0.31
Consensus pattern (20 bp):
TAAGATACAAAATTAGGTGT
Found at i:10790969 original size:23 final size:23
Alignment explanation
Indices: 10790942--10790992 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
10790932 ATTTAGAGTT
* *
10790942 TGTGAAACGGCATGTTAGGAATG
1 TGTGAAACGACATGGTAGGAATG
* * *
10790965 TGTGACATGACATGGTGGGAATG
1 TGTGAAACGACATGGTAGGAATG
10790988 TGTGA
1 TGTGA
10790993 CATAGCTGTG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.27, C:0.08, G:0.37, T:0.27
Consensus pattern (23 bp):
TGTGAAACGACATGGTAGGAATG
Found at i:10791038 original size:58 final size:58
Alignment explanation
Indices: 10790965--10791107 Score: 187
Period size: 58 Copynumber: 2.5 Consensus size: 58
10790955 GTTAGGAATG
* * * *
10790965 TGTGACATGACATGGTGGGAATGTGTGACATAGCTGTGACACGACAGGGTTTAGAGTT
1 TGTGACACGACATGGTGGGAATGTGTGACACAGCTATGACACGACAAGGTTTAGAGTT
* * * *
10791023 TGTGATACGACATGGTTGGAATGTGTGACACGGCTATGACACGTCAAGGTTTAGAGTT
1 TGTGACACGACATGGTGGGAATGTGTGACACAGCTATGACACGACAAGGTTTAGAGTT
* * *
10791081 TGTGACACGCCATGGAGGGAATCTGTG
1 TGTGACACGACATGGTGGGAATGTGTG
10791108 TTACGCCAGC
Statistics
Matches: 72, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
58 72 1.00
ACGTcount: A:0.25, C:0.14, G:0.34, T:0.27
Consensus pattern (58 bp):
TGTGACACGACATGGTGGGAATGTGTGACACAGCTATGACACGACAAGGTTTAGAGTT
Found at i:10791141 original size:47 final size:47
Alignment explanation
Indices: 10791071--10791426 Score: 361
Period size: 47 Copynumber: 7.6 Consensus size: 47
10791061 ACACGTCAAG
**
10791071 GTTTAGAGTTTGTGACACGCCATGGAGGGAATCTGTGTTACGCCAGC
1 GTTTAGAGTTTGTGACACGCCATGGAGGGAATCTGTGACACGCCAGC
* * * ** *
10791118 GTTTAGAGTTTGTGACACACCATGGAAGAAATCTGTGACACGTTAGA
1 GTTTAGAGTTTGTGACACGCCATGGAGGGAATCTGTGACACGCCAGC
* * * * * *
10791165 GTTGAAAGTTGGTGACACGCAATGGATGGAATCTGTGACACGCCAAC
1 GTTTAGAGTTTGTGACACGCCATGGAGGGAATCTGTGACACGCCAGC
* * * **
10791212 GTTTAGAGTTCGTGACACGCCATTGAGGGAATCTGTGACATGCTGGC
1 GTTTAGAGTTTGTGACACGCCATGGAGGGAATCTGTGACACGCCAGC
* * * * **
10791259 GTTCAGAGTTCGTCACATGTGATGGAGGGAATCTGTGACACGCCAGC
1 GTTTAGAGTTTGTGACACGCCATGGAGGGAATCTGTGACACGCCAGC
* * * * *
10791306 GTTCAGAGTTAGTGACATGCCATGGAGGGAATCTATGACACGTCAGC
1 GTTTAGAGTTTGTGACACGCCATGGAGGGAATCTGTGACACGCCAGC
* * ** *
10791353 GTTTAGAGTTTGTGACACGCCTTGGAGGAAATCTGTGACACGGTAGG
1 GTTTAGAGTTTGTGACACGCCATGGAGGGAATCTGTGACACGCCAGC
* * * *
10791400 GTTCAGAGTTTGTTAGACTCCATGGAG
1 GTTTAGAGTTTGTGACACGCCATGGAG
10791427 ATCCGTGACA
Statistics
Matches: 251, Mismatches: 58, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
47 251 1.00
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (47 bp):
GTTTAGAGTTTGTGACACGCCATGGAGGGAATCTGTGACACGCCAGC
Found at i:10791425 original size:141 final size:141
Alignment explanation
Indices: 10791056--10791426 Score: 399
Period size: 141 Copynumber: 2.6 Consensus size: 141
10791046 TGTGACACGG
* ** * *
10791056 CTATGACACGTCAAG-GTTTAGAGTTTGTGACACGCCATGGAGGGAATCTGTGTTACGCCAGCGT
1 CTATGACACGTC-AGCGTTTAGAGTTTGTGACACGCCTTGGAGGGAATCTGTGACACGCTAGGGT
* * * * ** * *
10791120 TTAGAGTTTGTGACACACCATGGAAGAAATCTGTGACACGTTAGAGTTGAAAGTTGGTGACACGC
65 TCAGAGTTTGTCACACTCCATGGAGGAAATCTGTGACACGCCAGAGTTCAAAGTTAGTGACACGC
*
10791185 AATGGATGGAAT
130 AATGGAGGGAAT
* * * * *
10791197 CTGTGACACGCCAACGTTTAGAGTTCGTGACACGCCATT-GAGGGAATCTGTGACATGCT-GGCG
1 CTATGACACGTCAGCGTTTAGAGTTTGTGACACGCC-TTGGAGGGAATCTGTGACACGCTAGG-G
* ** * * * *
10791260 TTCAGAGTTCGTCACA-TGTGATGGAGGGAATCTGTGACACGCCAGCGTTCAGAGTTAGTGACAT
64 TTCAGAGTTTGTCACACT-CCATGGAGGAAATCTGTGACACGCCAGAGTTCAAAGTTAGTGACAC
*
10791324 GCCATGGAGGGAAT
128 GCAATGGAGGGAAT
* *
10791338 CTATGACACGTCAGCGTTTAGAGTTTGTGACACGCCTTGGAGGAAATCTGTGACACGGTAGGGTT
1 CTATGACACGTCAGCGTTTAGAGTTTGTGACACGCCTTGGAGGGAATCTGTGACACGCTAGGGTT
* *
10791403 CAGAGTTTGTTAGACTCCATGGAG
66 CAGAGTTTGTCACACTCCATGGAG
10791427 ATCCGTGACA
Statistics
Matches: 184, Mismatches: 39, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
140 4 0.02
141 176 0.96
142 4 0.02
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (141 bp):
CTATGACACGTCAGCGTTTAGAGTTTGTGACACGCCTTGGAGGGAATCTGTGACACGCTAGGGTT
CAGAGTTTGTCACACTCCATGGAGGAAATCTGTGACACGCCAGAGTTCAAAGTTAGTGACACGCA
ATGGAGGGAAT
Found at i:10792108 original size:31 final size:31
Alignment explanation
Indices: 10792065--10792265 Score: 309
Period size: 31 Copynumber: 6.5 Consensus size: 31
10792055 GTGTCAGCGT
* * * *
10792065 TGGCATGTTACAACATTTGAC-TTAATACGCA
1 TGGCGTGTTACCACATTTTACGTT-ATATGCA
*
10792096 TGGCGTGTTACAACATTTTACGTTATATGCA
1 TGGCGTGTTACCACATTTTACGTTATATGCA
10792127 TGGCGTGTTACCACATTTTACG-T-TATGCA
1 TGGCGTGTTACCACATTTTACGTTATATGCA
*
10792156 TGGCGTGTTACCACATTTTACGTTATACGCA
1 TGGCGTGTTACCACATTTTACGTTATATGCA
*
10792187 TGGCGTGTTACAACATTTTACGTTATATGCA
1 TGGCGTGTTACCACATTTTACGTTATATGCA
10792218 TGGCGTGTTACCACATTTTACGTTATATGCA
1 TGGCGTGTTACCACATTTTACGTTATATGCA
10792249 TGGCGTGTTACCACATT
1 TGGCGTGTTACCACATT
10792266 ATGGGTTAAC
Statistics
Matches: 159, Mismatches: 8, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
29 28 0.18
30 2 0.01
31 127 0.80
32 2 0.01
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.37
Consensus pattern (31 bp):
TGGCGTGTTACCACATTTTACGTTATATGCA
Found at i:10792225 original size:91 final size:93
Alignment explanation
Indices: 10792065--10792265 Score: 345
Period size: 91 Copynumber: 2.2 Consensus size: 93
10792055 GTGTCAGCGT
* *
10792065 TGGCATGTTACAACATTTGACTTAATACGCATGGCGTGTTACAACATTTTACGTTATATGCATGG
1 TGGCGTGTTACCACATTTGACTTAATACGCATGGCGTGTTACAACATTTTACGTTATATGCATGG
10792130 CGTGTTACCACATTTTACG-T-TATGCA
66 CGTGTTACCACATTTTACGTTATATGCA
*
10792156 TGGCGTGTTACCACATTTTACGTT-ATACGCATGGCGTGTTACAACATTTTACGTTATATGCATG
1 TGGCGTGTTACCACATTTGAC-TTAATACGCATGGCGTGTTACAACATTTTACGTTATATGCATG
10792220 GCGTGTTACCACATTTTACGTTATATGCA
65 GCGTGTTACCACATTTTACGTTATATGCA
10792249 TGGCGTGTTACCACATT
1 TGGCGTGTTACCACATT
10792266 ATGGGTTAAC
Statistics
Matches: 104, Mismatches: 3, Indels: 4
0.94 0.03 0.04
Matches are distributed among these distances:
91 78 0.75
92 3 0.03
93 23 0.22
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.37
Consensus pattern (93 bp):
TGGCGTGTTACCACATTTGACTTAATACGCATGGCGTGTTACAACATTTTACGTTATATGCATGG
CGTGTTACCACATTTTACGTTATATGCA
Found at i:10792302 original size:34 final size:34
Alignment explanation
Indices: 10792263--10792330 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
10792253 GTGTTACCAC
10792263 ATTATGGGTTAACTCACTCGTGCATGTGTGCCAT
1 ATTATGGGTTAACTCACTCGTGCATGTGTGCCAT
10792297 ATTATGGGTTAACTCACTCGTGCATGTGTGCCAT
1 ATTATGGGTTAACTCACTCGTGCATGTGTGCCAT
10792331 GTTTTGTAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.21, C:0.21, G:0.24, T:0.35
Consensus pattern (34 bp):
ATTATGGGTTAACTCACTCGTGCATGTGTGCCAT
Found at i:10794034 original size:145 final size:144
Alignment explanation
Indices: 10793714--10794042 Score: 365
Period size: 145 Copynumber: 2.3 Consensus size: 144
10793704 ATTCTAAAGG
* * *
10793714 TTTGTGTTCAACAATTCCATATGTGATTATCAAATAATATATCTGTGTTTGTAGTTGGACCATGC
1 TTTGTGTTCAACAATTCCATATGTGATTATCGAATAACATATCTGTGTTTGCAGTTGGACCATGC
* * * *
10793779 AACGACAGCTCCACAACCACCGATAGGTCTTCTTTATACTCATAGTGCTAACGAGGAGTCGATAA
66 AACGACAGCTCCACAACCACCGAGAGGTCTTCTTTATA-GCACAGTGCTAACGAGCAGTCGATAA
* **
10793844 AGATGGTTGTAACGG
130 AGATGGTTCTAACAA
* * *
10793859 TTTGTGTTCAACAATTCTATATGTGATTATCGAATAACATATCTGTGTTTGCCGTTGGATCATGC
1 TTTGTGTTCAACAATTCCATATGTGATTATCGAATAACATATCTGTGTTTGCAGTTGGACCATGC
* * * * * * * * *
10793924 GATGACAGCTCCTCAACCACTGAGAGGTTTTCCTTTGAT-GCACAGTGTTAATGAGCCGTCGGT-
66 AACGACAGCTCCACAACCACCGAGAGGTCTT-CTTT-ATAGCACAGTGCTAACGAGCAGTCGATA
10793987 AAGATCGGTTCTAACAA
129 AAGAT-GGTTCTAACAA
* * * * *
10794004 TTTGTGTTCAACATTTCCACATATGTTTATCGAGTAACA
1 TTTGTGTTCAACAATTCCATATGTGATTATCGAATAACA
10794043 CATTAATTTC
Statistics
Matches: 153, Mismatches: 28, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
144 5 0.03
145 142 0.93
146 4 0.03
147 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.34
Consensus pattern (144 bp):
TTTGTGTTCAACAATTCCATATGTGATTATCGAATAACATATCTGTGTTTGCAGTTGGACCATGC
AACGACAGCTCCACAACCACCGAGAGGTCTTCTTTATAGCACAGTGCTAACGAGCAGTCGATAAA
GATGGTTCTAACAA
Found at i:10796308 original size:118 final size:118
Alignment explanation
Indices: 10796152--10796489 Score: 435
Period size: 118 Copynumber: 2.9 Consensus size: 118
10796142 TTGGGAGTGT
* *
10796152 CGTGTCATCCCACAATATAGCAAGAAGTCAGCGTGTCACTACAGAAATCTGCATGCACTCAGCAT
1 CGTGTCATCCCACAATATTGCAAGAAGTCAGCGTGTCACCACAGAAATCTGCATGCACTCAGCAT
* *
10796217 GTCACGCCAACTATCTACTTTCACTCAGCATGTCACCACAAGATGGGGCATAC
66 GTCACGCCAACTATCTGCTTCCACTCAGCATGTCACCACAAGATGGGGCATAC
* * * *
10796270 CGTGTCA-CCCTATAATATTGCAAGAAGTTAGTGTGTCACCACAGAAATTTGCATGCACTCAGCA
1 CGTGTCATCCC-ACAATATTGCAAGAAGTCAGCGTGTCACCACAGAAATCTGCATGCACTCAGCA
* * *** * **
10796334 TGTCACACCAACTATTTGCTTCCACTCAATGTGTCACCACAAGATGGGGCGTGT
65 TGTCACGCCAACTATCTGCTTCCACTCAGCATGTCACCACAAGATGGGGCATAC
* * * * * * * *
10796388 TGTGTTATCCCACAATATTGTAAAAAGTCAGCATGTGACCACAGAAATCTGCATGCAGTCAGCGT
1 CGTGTCATCCCACAATATTGCAAGAAGTCAGCGTGTCACCACAGAAATCTGCATGCACTCAGCAT
*
10796453 GTCACGCCAACTATCGGCTTCCACTCAGCATGTCACC
66 GTCACGCCAACTATCTGCTTCCACTCAGCATGTCACC
10796490 CCAAAATAAT
Statistics
Matches: 184, Mismatches: 34, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
117 3 0.02
118 178 0.97
119 3 0.02
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.25
Consensus pattern (118 bp):
CGTGTCATCCCACAATATTGCAAGAAGTCAGCGTGTCACCACAGAAATCTGCATGCACTCAGCAT
GTCACGCCAACTATCTGCTTCCACTCAGCATGTCACCACAAGATGGGGCATAC
Found at i:10796806 original size:3 final size:3
Alignment explanation
Indices: 10796798--10796822 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
10796788 CTTGGTGCAA
10796798 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
10796823 TTGTTAAGTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:10800393 original size:31 final size:31
Alignment explanation
Indices: 10800352--10800491 Score: 208
Period size: 31 Copynumber: 4.5 Consensus size: 31
10800342 TTTATTAGTC
* *
10800352 ATGTTGTAACACGCCTTGCATATAATGTAAA
1 ATGTTGTAACACGCCATGCATATAACGTAAA
* *
10800383 ATATTGTAACACGCCATGCATATAATGTAAA
1 ATGTTGTAACACGCCATGCATATAACGTAAA
* *
10800414 ATGTTGTAACACGCCATGCAGATAACATAAA
1 ATGTTGTAACACGCCATGCATATAACGTAAA
* *
10800445 ATGTTATAACACGCCATACATATAACGTAAA
1 ATGTTGTAACACGCCATGCATATAACGTAAA
10800476 ATGTTGTAACACGCCA
1 ATGTTGTAACACGCCA
10800492 ATGCTGACAC
Statistics
Matches: 98, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 98 1.00
ACGTcount: A:0.40, C:0.19, G:0.14, T:0.27
Consensus pattern (31 bp):
ATGTTGTAACACGCCATGCATATAACGTAAA
Found at i:10800943 original size:63 final size:63
Alignment explanation
Indices: 10800835--10800955 Score: 170
Period size: 63 Copynumber: 1.9 Consensus size: 63
10800825 ACCATAGCCC
* * *
10800835 GATGACGATGGTGCTCAATAGAGAGTTGACAGAGCTCATAAAGTTTAGAGAGCTAAGAAAGCT
1 GATGACAATGGTGCTCAATAGAGAGTTGACAGAGCTCAGAAAGTTTAAAGAGCTAAGAAAGCT
* * * * *
10800898 GATGACAATGGTGCTTAATAGAGAGTTGACAGAGTTGAGACAGTTTAAAGAGTTAAGA
1 GATGACAATGGTGCTCAATAGAGAGTTGACAGAGCTCAGAAAGTTTAAAGAGCTAAGA
10800956 GAGAAAGATG
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
63 50 1.00
ACGTcount: A:0.37, C:0.10, G:0.29, T:0.24
Consensus pattern (63 bp):
GATGACAATGGTGCTCAATAGAGAGTTGACAGAGCTCAGAAAGTTTAAAGAGCTAAGAAAGCT
Found at i:10804121 original size:68 final size:68
Alignment explanation
Indices: 10803985--10804231 Score: 234
Period size: 68 Copynumber: 3.6 Consensus size: 68
10803975 CATAAGATAC
* * * *
10803985 ATGAAAAATACATCATATACATAATCTCATGGCATTCATCATGCTTTCTTAATCATCTC-T-TGC
1 ATGAAATATACATCATATACATAATCTCATGGCTTTCATCATGCATACTTAATCATCTCATATG-
10804048 AGTAT
65 -GTAT
* * * *
10804053 ATGAAATATACATCATATACATAATATCATGGCTTTTATCATGCATACTTAAGCACCTCATATGG
1 ATGAAATATACATCATATACATAATCTCATGGCTTTCATCATGCATACTTAATCATCTCATATGG
10804118 TAT
66 TAT
* * * * * *
10804121 AT-AAAGTTTACATCATATACACT-ATCTTATAG-TATACATCATGCATACTGAATCATCTTATA
1 ATGAAA-TATACATCATATACA-TAATCTCATGGCT-TTCATCATGCATACTTAATCATCTCATA
10804183 TGGTAT
63 TGGTAT
* * * * *
10804189 ATGGAATTTACATCATATACTTAAATCTTATGGCATTCATCAT
1 ATGAAATATACATCATATACAT-AATCTCATGGCTTTCATCAT
10804232 ACCAAACATG
Statistics
Matches: 147, Mismatches: 23, Indels: 17
0.79 0.12 0.09
Matches are distributed among these distances:
67 5 0.03
68 121 0.82
69 19 0.13
70 2 0.01
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.37
Consensus pattern (68 bp):
ATGAAATATACATCATATACATAATCTCATGGCTTTCATCATGCATACTTAATCATCTCATATGG
TAT
Found at i:10805403 original size:27 final size:27
Alignment explanation
Indices: 10805373--10805424 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
10805363 TAAATACTAT
*
10805373 TTAAGTAAATGGAAAGTAAAAAGTATC
1 TTAACTAAATGGAAAGTAAAAAGTATC
* *
10805400 TTAACTAAATGGAGAGTATAAAGTA
1 TTAACTAAATGGAAAGTAAAAAGTA
10805425 AATAGGACAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.50, C:0.04, G:0.19, T:0.27
Consensus pattern (27 bp):
TTAACTAAATGGAAAGTAAAAAGTATC
Found at i:10813925 original size:36 final size:36
Alignment explanation
Indices: 10813880--10813991 Score: 118
Period size: 36 Copynumber: 3.1 Consensus size: 36
10813870 GAATGATGAT
*
10813880 ATTACCTGTGCACAATGTGGGGGAGCACA-GAATGGC
1 ATTAACTGTGCACAATGTGGGGGAGCACACG-ATGGC
* *
10813916 ATTAACTGTGCGCGATGTGGGGGAGCACACGATGGC
1 ATTAACTGTGCACAATGTGGGGGAGCACACGATGGC
* **** * *
10813952 ATTAGCTGTGTGTGATGTGGGGGTGAACACGATGGC
1 ATTAACTGTGCACAATGTGGGGGAGCACACGATGGC
10813988 ATTA
1 ATTA
10813992 GCTATGCGTG
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
36 66 0.99
37 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.37, T:0.23
Consensus pattern (36 bp):
ATTAACTGTGCACAATGTGGGGGAGCACACGATGGC
Found at i:10813992 original size:36 final size:36
Alignment explanation
Indices: 10813894--10814008 Score: 151
Period size: 36 Copynumber: 3.2 Consensus size: 36
10813884 CCTGTGCACA
* *
10813894 ATGTGGGGGAGCACA-GAATGGCATTAACTGTGCGCG
1 ATGTGGGGGAGCACACG-ATGGCATTAGCTGTGCGTG
*
10813930 ATGTGGGGGAGCACACGATGGCATTAGCTGTGTGTG
1 ATGTGGGGGAGCACACGATGGCATTAGCTGTGCGTG
* * *
10813966 ATGTGGGGGTGAACACGATGGCATTAGCTATGCGTG
1 ATGTGGGGGAGCACACGATGGCATTAGCTGTGCGTG
*
10814002 GTGTGGG
1 ATGTGGG
10814009 AGTGCAAATG
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
36 69 0.99
37 1 0.01
ACGTcount: A:0.21, C:0.14, G:0.42, T:0.23
Consensus pattern (36 bp):
ATGTGGGGGAGCACACGATGGCATTAGCTGTGCGTG
Found at i:10822196 original size:42 final size:42
Alignment explanation
Indices: 10822126--10822338 Score: 205
Period size: 42 Copynumber: 5.0 Consensus size: 42
10822116 CACGCTCCCA
* * * *
10822126 TCATCATCAGCTCATGTGCACTCCCCACTCGCACATGGCTGGG
1 TCATCATCGGCTTATGCGCAC-CCCCACTCGCACATAGCTGGG
* * * *
10822169 TCATCATAGGCTTATGCGTACCCCCACTCTCATATAGCTGGG
1 TCATCATCGGCTTATGCGCACCCCCACTCGCACATAGCTGGG
* *
10822211 TCATCATCGGCTTATGCGCACTCCCACTTGCACATAG-TCGGG
1 TCATCATCGGCTTATGCGCACCCCCACTCGCACATAGCT-GGG
** * * * **
10822253 TCATCATCGGCTTATGTACACTCCTACTCGCACATAACCAGG
1 TCATCATCGGCTTATGCGCACCCCCACTCGCACATAGCTGGG
* * *
10822295 TCATCATCGG-TGTATGCGCACTCCTACTCGCACATAGCCGGG
1 TCATCATCGGCT-TATGCGCACCCCCACTCGCACATAGCTGGG
10822337 TC
1 TC
10822339 CACATCAACA
Statistics
Matches: 142, Mismatches: 25, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
41 2 0.01
42 124 0.87
43 16 0.11
ACGTcount: A:0.21, C:0.34, G:0.20, T:0.26
Consensus pattern (42 bp):
TCATCATCGGCTTATGCGCACCCCCACTCGCACATAGCTGGG
Found at i:10822268 original size:84 final size:84
Alignment explanation
Indices: 10822126--10822338 Score: 234
Period size: 84 Copynumber: 2.5 Consensus size: 84
10822116 CACGCTCCCA
* * * * *
10822126 TCATCATCAGCTCATGTGCACTCCCCACTCGCACATGGCTGGGTCATCATAGGCTTATGCGTAC-
1 TCATCATCGGCTTATGCGCACT-CCCACTCGCACATAGCCGGGTCATCATAGGCTTAT--GTACA
* * * **
10822190 C-CCCACTCTCATATAGCTGGG
63 CTCCCACTCGCACATAACCAGG
* * *
10822211 TCATCATCGGCTTATGCGCACTCCCACTTGCACATAGTCGGGTCATCATCGGCTTATGTACACTC
1 TCATCATCGGCTTATGCGCACTCCCACTCGCACATAGCCGGGTCATCATAGGCTTATGTACACTC
*
10822276 CTACTCGCACATAACCAGG
66 CCACTCGCACATAACCAGG
*
10822295 TCATCATCGG-TGTATGCGCACTCCTACTCGCACATAGCCGGGTC
1 TCATCATCGGCT-TATGCGCACTCCCACTCGCACATAGCCGGGTC
10822339 CACATCAACA
Statistics
Matches: 108, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
82 4 0.04
83 2 0.02
84 83 0.77
85 19 0.18
ACGTcount: A:0.21, C:0.34, G:0.20, T:0.26
Consensus pattern (84 bp):
TCATCATCGGCTTATGCGCACTCCCACTCGCACATAGCCGGGTCATCATAGGCTTATGTACACTC
CCACTCGCACATAACCAGG
Found at i:10823169 original size:19 final size:19
Alignment explanation
Indices: 10823121--10823170 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
10823111 GATGGAAAGA
10823121 GGAAGAAGAAGAAGTTGCT
1 GGAAGAAGAAGAAGTTGCT
*
10823140 GGAA-ATTGAAGAAGTTGCT
1 GGAAGA-AGAAGAAGTTGCT
*
10823159 GGAAGGAGAAGA
1 GGAAGAAGAAGA
10823171 TATTTATAGC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 1 0.04
19 25 0.96
ACGTcount: A:0.42, C:0.04, G:0.38, T:0.16
Consensus pattern (19 bp):
GGAAGAAGAAGAAGTTGCT
Found at i:10825752 original size:14 final size:14
Alignment explanation
Indices: 10825729--10825762 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
10825719 CTTCTCTCTC
10825729 CTTTCTCTTTCCTT
1 CTTTCTCTTTCCTT
* *
10825743 TTTTCTCTTTTCTT
1 CTTTCTCTTTCCTT
10825757 CTTTCT
1 CTTTCT
10825763 TTTTGCTTTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (14 bp):
CTTTCTCTTTCCTT
Found at i:10825754 original size:21 final size:21
Alignment explanation
Indices: 10825713--10825766 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
10825703 CTAGCTTTTT
* *
10825713 TTCTTTCTTCTCTCTCCTTTC
1 TTCTTTCTTTTTTCTCCTTTC
*
10825734 -TCTTTCCTTTTTTCTCTTTTC
1 TTCTTT-CTTTTTTCTCCTTTC
10825755 TTCTTTCTTTTT
1 TTCTTTCTTTTT
10825767 GCTTTCAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
20 5 0.18
21 18 0.64
22 5 0.18
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (21 bp):
TTCTTTCTTTTTTCTCCTTTC
Found at i:10826822 original size:43 final size:43
Alignment explanation
Indices: 10826761--10826847 Score: 147
Period size: 43 Copynumber: 2.0 Consensus size: 43
10826751 TGAATTGACA
*
10826761 TCTATCGGTCTTAATCTTGTTCTTAAAGTCGTATTAACCACTG
1 TCTATCCGTCTTAATCTTGTTCTTAAAGTCGTATTAACCACTG
* *
10826804 TCTATCCGTCTTAATCTTGTTCTTAATGTTGTATTAACCACTG
1 TCTATCCGTCTTAATCTTGTTCTTAAAGTCGTATTAACCACTG
10826847 T
1 T
10826848 TTTAGGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.22, C:0.21, G:0.13, T:0.45
Consensus pattern (43 bp):
TCTATCCGTCTTAATCTTGTTCTTAAAGTCGTATTAACCACTG
Found at i:10833778 original size:598 final size:600
Alignment explanation
Indices: 10832692--10833820 Score: 1964
Period size: 598 Copynumber: 1.9 Consensus size: 600
10832682 CCAGCTAAAT
* * *
10832692 CAAGTCCAAAAATTATAAAATTTTAATATGGAAAGGTTCCATATGTTAGCTGACAATGGTTGAAA
1 CAAGTCCAAAAATTATAAAATTTTAATATGAAAAGGGTCCATATGTTAGCTGACAATGGTTAAAA
* *
10832757 TTTGGAAATTAAATTTCCTGATTTGATGCCGCATCAAGCCATAAAACTGTGACTGGTACACTGCT
66 TTTGGAAATTAAATTTCCTGATTTGATGCCGCATCAAGCCACAAAACTGAGACTGGTACACTGCT
** *
10832822 GCCAGAATTTTGTAAAGTCATGGTTTTTGGGATTTTAGTGTCCATATTTGCAGCCTAAATTGGTG
131 GCCAGAATTTTGTAAAGTCATGGTTTTTAAGATTTTAGTGTCCATATTTGCAACCTAAATTGGTG
*
10832887 CAATTAAAAACTCTAATTTACTAAACAATATCCTATGGAAAAGTTCCAAAAAGATAAATTTTGAT
196 CAATTAAAAACTCTAATTCACTAAACAATATCCTATGGAAAAGTTCCAAAAAGATAAATTTTGAT
10832952 ATATTTAAATTAGGGAATTTGATTCCTTAAAATAAGGATATCAGGATTTAATTAATCACATCCGT
261 ATATTTAAATTAGGGAATTTGATTCCTTAAAATAAGGATATCAGGATTTAATTAATCACATCCGT
10833017 AAATTTAGGAATTTAATTCCTACAAATATGGGAGTGTGATAAATATGGACAAGATAAATATCATG
326 AAATTTAGGAATTTAATTCCTACAAATATGGGAGTGTGATAAATATGGACAAGATAAATATCATG
10833082 AATTAATTTCCTTCTTTTAAGAAGTGAAATTCGAATAGGACACTTAAATATAATTAAAGATAATG
391 AATTAATTTCCTTCTTTTAAGAAGTGAAATTCGAATAGGACACTTAAATATAATTAAAGATAATG
10833147 TTGTCTTAAATATTATATTTAAAGTATCTAATGAGATTAGATAATTGAAGACACATAATCTTTAA
456 TTGTCTTAAATATTATATTTAAAGTATCTAATGAGATTAGATAATTGAAGACACATAATCTTTAA
10833212 TTTAAAAGGATNCAACCTAAAAATTACATCTATGTATATAATACATAGACTACGATTTTTTAGGG
521 TTTAAAAGGAT-CAACCTAAAAATTACATCTATGTATATAATACATAGACTACGATTTTTTAGGG
10833277 TTTTGGATATCTAACG
585 TTTTGGATATCTAACG
* *
10833293 CAAGTTCAAAAATTATAAAATTTTAATATGAAAAGGGTCCATATGTTAGCTGACCATGGTTAAAA
1 CAAGTCCAAAAATTATAAAATTTTAATATGAAAAGGGTCCATATGTTAGCTGACAATGGTTAAAA
* * *
10833358 TTTGGGAATTAAA-TTCCTTGATTTGGTG-C-CAT-AAGCCACAAAA-TCGAGACTGGTACAGTG
66 TTTGGAAATTAAATTTCC-TGATTTGATGCCGCATCAAGCCACAAAACT-GAGACTGGTACACTG
* * *
10833418 CTGCTAGAATTTTGTAAAGTCATGGTTTTTAAGATTTTGGTGTCTATATTTGCAACCTAAATTGG
129 CTGCCAGAATTTTGTAAAGTCATGGTTTTTAAGATTTTAGTGTCCATATTTGCAACCTAAATTGG
* * * * * *
10833483 TGTAATTAAAAA-TACTACTTCACTAAACAATATCTTATGGAAAATTTCTAGAAAGATAAATTTT
194 TGCAATTAAAAACT-CTAATTCACTAAACAATATCCTATGGAAAAGTTCCAAAAAGATAAATTTT
*
10833547 GATATATTTAAATTAGGGAATTTGATTCGTTAAAATAAGGATATCAGGATTTAATTAATCACATC
258 GATATATTTAAATTAGGGAATTTGATTCCTTAAAATAAGGATATCAGGATTTAATTAATCACATC
10833612 CGTAAATTTAGGAATTTAATTCCTACAAATATGGGAGTGTGATAAATATGGACAAGATAAATATC
323 CGTAAATTTAGGAATTTAATTCCTACAAATATGGGAGTGTGATAAATATGGACAAGATAAATATC
10833677 ATGAATTAATTTCCTTCTTTTAAGAAGTGAAATTCGAATAGGACACTTAAATATAATTAAAGATA
388 ATGAATTAATTTCCTTCTTTTAAGAAGTGAAATTCGAATAGGACACTTAAATATAATTAAAGATA
10833742 ATGTTGTCTTAAATATTATATTTAAAGTATCTAATGAGATTAGATAATTGAAGACACATAATCTT
453 ATGTTGTCTTAAATATTATATTTAAAGTATCTAATGAGATTAGATAATTGAAGACACATAATCTT
10833807 TAATTTAAAAGGAT
518 TAATTTAAAAGGAT
10833821 TAATAAAAGT
Statistics
Matches: 501, Mismatches: 24, Indels: 9
0.94 0.04 0.02
Matches are distributed among these distances:
597 2 0.00
598 410 0.82
599 3 0.01
600 5 0.01
601 81 0.16
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.35
Consensus pattern (600 bp):
CAAGTCCAAAAATTATAAAATTTTAATATGAAAAGGGTCCATATGTTAGCTGACAATGGTTAAAA
TTTGGAAATTAAATTTCCTGATTTGATGCCGCATCAAGCCACAAAACTGAGACTGGTACACTGCT
GCCAGAATTTTGTAAAGTCATGGTTTTTAAGATTTTAGTGTCCATATTTGCAACCTAAATTGGTG
CAATTAAAAACTCTAATTCACTAAACAATATCCTATGGAAAAGTTCCAAAAAGATAAATTTTGAT
ATATTTAAATTAGGGAATTTGATTCCTTAAAATAAGGATATCAGGATTTAATTAATCACATCCGT
AAATTTAGGAATTTAATTCCTACAAATATGGGAGTGTGATAAATATGGACAAGATAAATATCATG
AATTAATTTCCTTCTTTTAAGAAGTGAAATTCGAATAGGACACTTAAATATAATTAAAGATAATG
TTGTCTTAAATATTATATTTAAAGTATCTAATGAGATTAGATAATTGAAGACACATAATCTTTAA
TTTAAAAGGATCAACCTAAAAATTACATCTATGTATATAATACATAGACTACGATTTTTTAGGGT
TTTGGATATCTAACG
Found at i:10835932 original size:158 final size:158
Alignment explanation
Indices: 10835710--10836022 Score: 457
Period size: 158 Copynumber: 2.0 Consensus size: 158
10835700 AGCAAAGAAA
* * * ** *
10835710 GATGATCCAAAACTATTCTACATTTGGCATTGTAGGCTTGGACACATCAATGAGACTTGCTTAAC
1 GATGATCCAAAACTATCCTACATCTAGCATTGTAGGCTCAGACACATCAATGAGACTCGCTTAAC
* * * ** *
10835775 CAAGTTACACAAACAAGGTTTTGTTGATTTATTTAATTATGAATC-TTATGGAACTTGGGAATGT
66 CAAGTTACACAAACAAGGTTATATCGATCCATTTAATTATGAATCTTTATGGAACATGGGAATGT
* *
10835839 TGTCTCCTTGGTACGATGACTAAGTNCAT
131 TGTCTCCTTGGTAAGATGACCAAGT-CAT
10835868 GATGATCCAAAACTATCCTACATCTAGCATTGTAGGCTCAGACACATCAATGAGACTCGCTTAAC
1 GATGATCCAAAACTATCCTACATCTAGCATTGTAGGCTCAGACACATCAATGAGACTCGCTTAAC
* *
10835933 CAAGTTACACAAACAAGGTTATATCGATCCATTTAATTATGAATCTTTATGGAACATGTGAGTGT
66 CAAGTTACACAAACAAGGTTATATCGATCCATTTAATTATGAATCTTTATGGAACATGGGAATGT
*
10835998 TGTCTCTTTGGTAAGATGACCAAGT
131 TGTCTCCTTGGTAAGATGACCAAGT
10836023 TGCCTTTCAC
Statistics
Matches: 137, Mismatches: 17, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
158 99 0.72
159 38 0.28
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (158 bp):
GATGATCCAAAACTATCCTACATCTAGCATTGTAGGCTCAGACACATCAATGAGACTCGCTTAAC
CAAGTTACACAAACAAGGTTATATCGATCCATTTAATTATGAATCTTTATGGAACATGGGAATGT
TGTCTCCTTGGTAAGATGACCAAGTCAT
Found at i:10844090 original size:29 final size:29
Alignment explanation
Indices: 10844058--10844144 Score: 79
Period size: 29 Copynumber: 3.0 Consensus size: 29
10844048 TCACTTGGAG
*
10844058 GCCATCCTTATATATATTGCCAGTTTCAC
1 GCCATCCTTATATATATTGCCAGTTACAC
* * * *
10844087 GCCATGCTTATACA-AGTTGTCAGTTACAT
1 GCCATCCTTATATATA-TTGCCAGTTACAC
* *
10844116 GCCATGCC-TATATATATTGTCAATTACAC
1 GCCAT-CCTTATATATATTGCCAGTTACAC
10844145 AGCATGGCTA
Statistics
Matches: 46, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
28 1 0.02
29 43 0.93
30 2 0.04
ACGTcount: A:0.28, C:0.24, G:0.13, T:0.36
Consensus pattern (29 bp):
GCCATCCTTATATATATTGCCAGTTACAC
Found at i:10850592 original size:43 final size:41
Alignment explanation
Indices: 10850545--10850682 Score: 132
Period size: 43 Copynumber: 3.2 Consensus size: 41
10850535 TGTTGTGTGA
10850545 TAATGATGACCCAGCTATGTGCGCTGTGGTAGTGCACATAAGC
1 TAATGATGACCCAGCTATGTGCG-TGTGG-AGTGCACATAAGC
* * *
10850588 TAATGATGACCCAACTATGTGCGAGTAAGGAGTGCGCATAAGC
1 TAATGATGACCCAGCTATGTGCGTGT--GGAGTGCACATAAGC
** * * * *
10850631 CGATGATGACCTAGCTATGTGTGGTGTGAGAATGCACATGAGC
1 TAATGATGACCCAGCTATGTG-CGTGTG-GAGTGCACATAAGC
*
10850674 TGATGATGA
1 TAATGATGA
10850683 TGACTTCGAC
Statistics
Matches: 78, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
42 3 0.04
43 70 0.90
44 5 0.06
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (41 bp):
TAATGATGACCCAGCTATGTGCGTGTGGAGTGCACATAAGC
Found at i:10853385 original size:63 final size:63
Alignment explanation
Indices: 10853279--10853435 Score: 235
Period size: 63 Copynumber: 2.5 Consensus size: 63
10853269 ATCATTACCA
* * * *
10853279 GCATGTGCACTGCCCACTCCGCACATGCACAGTTGTAAGTGTCACAACATTGTCATTCGACTG
1 GCATATGCACTGCCCACTCCGCACATGCACAGCTGTAAGTGTCACAACATCGTCATTCAACTG
* * *
10853342 GCATATGCACTACCCACTCCGCATATGCACGGCTGT-AGTTGTCACAACATCGTCATTCAACTG
1 GCATATGCACTGCCCACTCCGCACATGCACAGCTGTAAG-TGTCACAACATCGTCATTCAACTG
10853405 GCATATGCACTGCCCACTCCGCACATGCACA
1 GCATATGCACTGCCCACTCCGCACATGCACA
10853436 ATTACATCAA
Statistics
Matches: 83, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
62 2 0.02
63 81 0.98
ACGTcount: A:0.25, C:0.33, G:0.18, T:0.24
Consensus pattern (63 bp):
GCATATGCACTGCCCACTCCGCACATGCACAGCTGTAAGTGTCACAACATCGTCATTCAACTG
Found at i:10872525 original size:19 final size:19
Alignment explanation
Indices: 10872501--10872598 Score: 56
Period size: 19 Copynumber: 5.1 Consensus size: 19
10872491 TGCCCGTGTG
10872501 CACGATGTGGGGGGATGTA
1 CACGATGTGGGGGGATGTA
**** *
10872520 CACGATG-GCACTGATTGTG
1 CACGATGTGGGGGGA-TGTA
*
10872539 CACGATGT-GGGGGATGCA
1 CACGATGTGGGGGGATGTA
* * ** *
10872557 CATGATGGTGCCGGCTATGTG
1 CACGAT-GTG-GGGGGATGTA
10872578 CACGATGTGGGGGGATGTA
1 CACGATGTGGGGGGATGTA
10872597 CA
1 CA
10872599 TGAGCCGGGA
Statistics
Matches: 52, Mismatches: 22, Indels: 10
0.62 0.26 0.12
Matches are distributed among these distances:
18 10 0.19
19 29 0.56
20 3 0.06
21 10 0.19
ACGTcount: A:0.20, C:0.16, G:0.41, T:0.22
Consensus pattern (19 bp):
CACGATGTGGGGGGATGTA
Found at i:10872862 original size:21 final size:21
Alignment explanation
Indices: 10872822--10872862 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
10872812 CTCTGTTTTT
**
10872822 GCTGCAGCGAAATTCATTCTC
1 GCTGCAGCGAAAAACATTCTC
*
10872843 GCTGCAGCGAAAAACTTTCT
1 GCTGCAGCGAAAAACATTCT
10872863 GTTTTATCTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (21 bp):
GCTGCAGCGAAAAACATTCTC
Found at i:10874463 original size:63 final size:63
Alignment explanation
Indices: 10874372--10874526 Score: 168
Period size: 63 Copynumber: 2.5 Consensus size: 63
10874362 ATCATTACCA
* * * *
10874372 GCATGTGCACTGCCAACTCCGCACATGCACAGTTGTAAG-TGTCACAACATCATCATTCGACCG
1 GCATATGCACTACCAACTCCGCACATGCACAGTTGT-AGTTATCACAACATCATCATTCAACCG
* * * * ** *
10874435 GCATATGCACTACCTACTCTGCATATGCACGGTTGTAGTTATCACAACATTGTCATTCAACTG
1 GCATATGCACTACCAACTCCGCACATGCACAGTTGTAGTTATCACAACATCATCATTCAACCG
* * *
10874498 GCATATGCATTGCCCACTCCGCACATGCA
1 GCATATGCACTACCAACTCCGCACATGCA
10874527 TGGTTACATC
Statistics
Matches: 75, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
62 2 0.03
63 73 0.97
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.26
Consensus pattern (63 bp):
GCATATGCACTACCAACTCCGCACATGCACAGTTGTAGTTATCACAACATCATCATTCAACCG
Found at i:10881161 original size:64 final size:64
Alignment explanation
Indices: 10881082--10881211 Score: 224
Period size: 64 Copynumber: 2.0 Consensus size: 64
10881072 AAAGAAAAGT
* * *
10881082 TAAGGTTGATTTTAGGTGGTTAGAGATGGCTAATAATTAGAATTGTGGGCTGTTATATTTTTTA
1 TAAGGTTGATTTTAGGTGGTTAGAGATAGCTAACAATTAGAATCGTGGGCTGTTATATTTTTTA
*
10881146 TAAGGTTGATTTTAGGTGGTTAGAGATAGCTAACAATTAGAGTCGTGGGCTGTTATATTTTTTA
1 TAAGGTTGATTTTAGGTGGTTAGAGATAGCTAACAATTAGAATCGTGGGCTGTTATATTTTTTA
10881210 TA
1 TA
10881212 GCTATATTGT
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 62 1.00
ACGTcount: A:0.27, C:0.05, G:0.26, T:0.42
Consensus pattern (64 bp):
TAAGGTTGATTTTAGGTGGTTAGAGATAGCTAACAATTAGAATCGTGGGCTGTTATATTTTTTA
Found at i:10881590 original size:43 final size:43
Alignment explanation
Indices: 10881542--10881678 Score: 152
Period size: 43 Copynumber: 3.2 Consensus size: 43
10881532 TTGTGTGATA
*
10881542 ATGATGACCCAGCTATGTACAATATGGTAA-TGCACATGAGCTG
1 ATGATGACCCAGCTATGTACAGTATGG-AAGTGCACATGAGCTG
** * * *
10881585 ATGATGACCTGGCTATGTACGAGTA-GGAAGTGCGCATAAGCCG
1 ATGATGACCCAGCTATGTAC-AGTATGGAAGTGCACATGAGCTG
* * * *
10881628 ATAATGACCCAGCTATGTGCTGTGTGGAAGTGCACATGAGCTG
1 ATGATGACCCAGCTATGTACAGTATGGAAGTGCACATGAGCTG
10881671 ATGATGAC
1 ATGATGAC
10881679 GACGCCGGCT
Statistics
Matches: 75, Mismatches: 16, Indels: 6
0.77 0.16 0.06
Matches are distributed among these distances:
42 4 0.05
43 68 0.91
44 3 0.04
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.24
Consensus pattern (43 bp):
ATGATGACCCAGCTATGTACAGTATGGAAGTGCACATGAGCTG
Found at i:10886041 original size:19 final size:19
Alignment explanation
Indices: 10885947--10886044 Score: 56
Period size: 19 Copynumber: 5.1 Consensus size: 19
10885937 ACCCGGCTCA
*
10885947 TGTACATCCCTCCACATCG
1 TGTACATCCCCCCACATCG
* * **
10885966 TGCACATAGCCGGCACCATCG
1 TGTACAT-CCCCCCA-CATCG
*
10885987 TGTGCAT-CCCCCACATCG
1 TGTACATCCCCCCACATCG
* ****
10886005 TGCACAATCAGTGC-CATCG
1 TGTAC-ATCCCCCCACATCG
10886024 TGTACATCCCCCCACATCG
1 TGTACATCCCCCCACATCG
10886043 TG
1 TG
10886045 CACACGGGCA
Statistics
Matches: 55, Mismatches: 19, Indels: 10
0.65 0.23 0.12
Matches are distributed among these distances:
18 12 0.22
19 28 0.51
20 5 0.09
21 10 0.18
ACGTcount: A:0.21, C:0.40, G:0.17, T:0.21
Consensus pattern (19 bp):
TGTACATCCCCCCACATCG
Found at i:10888096 original size:59 final size:57
Alignment explanation
Indices: 10887987--10888149 Score: 193
Period size: 59 Copynumber: 2.8 Consensus size: 57
10887977 TCTTGTTTTT
* * * * * *
10887987 AATTAAGACAAAAATATTTTATCTGGCCTAAATTGAGATAAATATGTTTTCTTATCTA
1 AATTAAGACAAAAATATTTT-TCTTGTCTAAATTAAGACAAACATATTTTCTTATCTA
*
10888045 AATTAAGACAAAAAATATTTTTCTTGTCTTAAATTAAGACAAACATATTTTCTTGTCTA
1 AATTAAGAC-AAAAATATTTTTCTTGTC-TAAATTAAGACAAACATATTTTCTTATCTA
* * *
10888104 AATTAAGACCAAACAT-GTTTTCTTGTCTAAATTAAGACAAGCATAT
1 AATTAAGA-CAAAAATATTTTTCTTGTCTAAATTAAGACAAACATAT
10888150 GAAAGCTACA
Statistics
Matches: 92, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
57 18 0.20
58 24 0.26
59 49 0.53
60 1 0.01
ACGTcount: A:0.40, C:0.12, G:0.09, T:0.38
Consensus pattern (57 bp):
AATTAAGACAAAAATATTTTTCTTGTCTAAATTAAGACAAACATATTTTCTTATCTA
Found at i:10888116 original size:29 final size:28
Alignment explanation
Indices: 10887987--10888149 Score: 173
Period size: 29 Copynumber: 5.6 Consensus size: 28
10887977 TCTTGTTTTT
* * *
10887987 AATTAAGACAAAAATATTTTATCTGGCCTA
1 AATTAAGACAAACATA-TTT-TCTTGTCTA
* * * * *
10888017 AATTGAGATAAATATGTTTTCTTATCTA
1 AATTAAGACAAACATATTTTCTTGTCTA
*
10888045 AATTAAGACAAAAAATATTTTTCTTGTCTTA
1 AATTAAGAC-AAACATA-TTTTCTTGTC-TA
10888076 AATTAAGACAAACATATTTTCTTGTCTA
1 AATTAAGACAAACATATTTTCTTGTCTA
*
10888104 AATTAAGACCAAACATGTTTTCTTGTCTA
1 AATTAAGA-CAAACATATTTTCTTGTCTA
*
10888133 AATTAAGACAAGCATAT
1 AATTAAGACAAACATAT
10888150 GAAAGCTACA
Statistics
Matches: 113, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
28 30 0.27
29 45 0.40
30 27 0.24
31 11 0.10
ACGTcount: A:0.40, C:0.12, G:0.09, T:0.38
Consensus pattern (28 bp):
AATTAAGACAAACATATTTTCTTGTCTA
Found at i:10892701 original size:20 final size:20
Alignment explanation
Indices: 10892651--10892703 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 20
10892641 TATAAAAACA
* *
10892651 TAAAATAAATATAAATAACG
1 TAAAATAAACATTAATAACG
* *
10892671 TAAAACT-AACATTATTAACT
1 TAAAA-TAAACATTAATAACG
10892691 TAAAATAAACATT
1 TAAAATAAACATT
10892704 TAAACATAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
19 1 0.04
20 25 0.93
21 1 0.04
ACGTcount: A:0.58, C:0.09, G:0.02, T:0.30
Consensus pattern (20 bp):
TAAAATAAACATTAATAACG
Found at i:10899142 original size:19 final size:19
Alignment explanation
Indices: 10899118--10899154 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
10899108 CCATTTGACT
10899118 TATTGGAGTATGATTTGAG
1 TATTGGAGTATGATTTGAG
10899137 TATTGGAGTATGATTTGA
1 TATTGGAGTATGATTTGA
10899155 AGTTTAGAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.27, C:0.00, G:0.30, T:0.43
Consensus pattern (19 bp):
TATTGGAGTATGATTTGAG
Found at i:10909390 original size:19 final size:19
Alignment explanation
Indices: 10909366--10909407 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
10909356 AAGTTTTCTC
* *
10909366 AATTAGTGTCTAGCTTTAA
1 AATTAGTATCAAGCTTTAA
*
10909385 AATTAGTATCAAGCTTTAT
1 AATTAGTATCAAGCTTTAA
10909404 AATT
1 AATT
10909408 GTCTCTTCTC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.36, C:0.10, G:0.12, T:0.43
Consensus pattern (19 bp):
AATTAGTATCAAGCTTTAA
Found at i:10911384 original size:32 final size:32
Alignment explanation
Indices: 10911341--10911453 Score: 111
Period size: 32 Copynumber: 3.4 Consensus size: 32
10911331 CATTGTTGTA
*
10911341 GGTTGTGGTTGAGCCTTTGAAAAACTACTTTG
1 GGTTTTGGTTGAGCCTTTGAAAAACTACTTTG
* **
10911373 GATTTTGGTTGAGCCCGTGAAAAACTA-TTGTG
1 GGTTTTGGTTGAGCCTTTGAAAAACTACTT-TG
* * * *
10911405 AAAGGTTGTGGTTAATCCTTTGAAAAACCACTTTG
1 ---GGTTTTGGTTGAGCCTTTGAAAAACTACTTTG
10911440 GGTTTTGGTTGAGC
1 GGTTTTGGTTGAGC
10911454 TCGTGAAAAA
Statistics
Matches: 62, Mismatches: 14, Indels: 10
0.72 0.16 0.12
Matches are distributed among these distances:
31 2 0.03
32 36 0.58
35 22 0.35
36 2 0.03
ACGTcount: A:0.24, C:0.12, G:0.27, T:0.36
Consensus pattern (32 bp):
GGTTTTGGTTGAGCCTTTGAAAAACTACTTTG
Found at i:10911403 original size:67 final size:68
Alignment explanation
Indices: 10911303--10911478 Score: 218
Period size: 67 Copynumber: 2.6 Consensus size: 68
10911293 AAGTTGGTTG
* * * *
10911303 TTGGGTTTTGGTTGA-TCC-TGATAAAACCCATTGTTG-TAGGTTGTGGTTGAGCCTTTGAAAAA
1 TTGGATTTTGGTTGAGCCCGTGA-AAAA-CCATTGTTGAAAGGTTGTGGTTAAGCCTTTGAAAAA
*
10911365 CTACT
64 CCACT
* *
10911370 TTGGATTTTGGTTGAGCCCGTGAAAAACTATTG-TGAAAGGTTGTGGTTAATCCTTTGAAAAACC
1 TTGGATTTTGGTTGAGCCCGTGAAAAACCATTGTTGAAAGGTTGTGGTTAAGCCTTTGAAAAACC
10911434 ACT
66 ACT
* *
10911437 TTGGGTTTTGGTTGAGCTCGTGAAAAACCATTG-TGAAAGGTT
1 TTGGATTTTGGTTGAGCCCGTGAAAAACCATTGTTGAAAGGTT
10911479 TTGGCTGAGC
Statistics
Matches: 96, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
66 2 0.02
67 85 0.89
68 6 0.06
69 3 0.03
ACGTcount: A:0.25, C:0.12, G:0.26, T:0.36
Consensus pattern (68 bp):
TTGGATTTTGGTTGAGCCCGTGAAAAACCATTGTTGAAAGGTTGTGGTTAAGCCTTTGAAAAACC
ACT
Found at i:10911461 original size:32 final size:32
Alignment explanation
Indices: 10911341--10911466 Score: 103
Period size: 32 Copynumber: 3.8 Consensus size: 32
10911331 CATTGTTGTA
* *
10911341 GGTTGTGGTTGAGCCTTTGAAAAACTACTTTG
1 GGTTGTGGTTGAGCCTGTGAAAAACCACTTTG
* * * *
10911373 GATTTTGGTTGAGCCCGTGAAAAACTA-TTGTG
1 GGTTGTGGTTGAGCCTGTGAAAAACCACTT-TG
* * *
10911405 AAAGGTTGTGGTTAATCCTTTGAAAAACCACTTTG
1 ---GGTTGTGGTTGAGCCTGTGAAAAACCACTTTG
*
10911440 GGTTTTGGTTGAG-CTCGTGAAAAACCA
1 GGTTGTGGTTGAGCCT-GTGAAAAACCA
10911467 TTGTGAAAGG
Statistics
Matches: 73, Mismatches: 15, Indels: 12
0.73 0.15 0.12
Matches are distributed among these distances:
31 4 0.05
32 45 0.62
35 22 0.30
36 2 0.03
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.34
Consensus pattern (32 bp):
GGTTGTGGTTGAGCCTGTGAAAAACCACTTTG
Found at i:10911488 original size:35 final size:34
Alignment explanation
Indices: 10911375--10911489 Score: 112
Period size: 35 Copynumber: 3.4 Consensus size: 34
10911365 CTACTTTGGA
*
10911375 TTTTGGTTGAGCCCGTGAAAAACTATTGTGAAAGG
1 TTTTGGTTGAG-CCGTGAAAAACCATTGTGAAAGG
* * * *
10911410 TTGTGGTTAATCCTTTGAAAAACCACTT-TG---GG
1 TTTTGGTTGAGCC-GTGAAAAACCA-TTGTGAAAGG
10911442 TTTTGGTTGAGCTCGTGAAAAACCATTGTGAAAGG
1 TTTTGGTTGAGC-CGTGAAAAACCATTGTGAAAGG
*
10911477 TTTTGGCTGAGCC
1 TTTTGGTTGAGCC
10911490 TTGTTAAAGT
Statistics
Matches: 63, Mismatches: 10, Indels: 15
0.72 0.11 0.17
Matches are distributed among these distances:
31 2 0.03
32 23 0.37
33 1 0.02
34 3 0.05
35 32 0.51
36 2 0.03
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.34
Consensus pattern (34 bp):
TTTTGGTTGAGCCGTGAAAAACCATTGTGAAAGG
Found at i:10912228 original size:18 final size:18
Alignment explanation
Indices: 10912205--10912239 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
10912195 GAATATATAT
*
10912205 ATAATTTTTTAAAAAAAA
1 ATAATTTATTAAAAAAAA
10912223 ATAATTTATTAAAAAAA
1 ATAATTTATTAAAAAAA
10912240 TTTTGGAAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
ATAATTTATTAAAAAAAA
Found at i:10912394 original size:19 final size:19
Alignment explanation
Indices: 10912370--10912406 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
10912360 TCTTAAATCA
*
10912370 AAAATATATATTGTAATAG
1 AAAATATATATTATAATAG
10912389 AAAATATATATTATAATA
1 AAAATATATATTATAATA
10912407 ATAGAATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (19 bp):
AAAATATATATTATAATAG
Found at i:10912478 original size:34 final size:32
Alignment explanation
Indices: 10912417--10912479 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 32
10912407 ATAGAATTTA
*
10912417 ATACAAGAAAAACTATTTTCTTTAAAAAATTG
1 ATACAAGAAAAACTATTTTCTTAAAAAAATTG
*
10912449 ATACAAGAAAAACTCCTTTTTCTTAAAAAAA
1 ATACAAGAAAAACT--ATTTTCTTAAAAAAA
10912480 AATTAATAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
32 14 0.52
34 13 0.48
ACGTcount: A:0.51, C:0.13, G:0.05, T:0.32
Consensus pattern (32 bp):
ATACAAGAAAAACTATTTTCTTAAAAAAATTG
Found at i:10924647 original size:28 final size:30
Alignment explanation
Indices: 10924588--10924647 Score: 70
Period size: 28 Copynumber: 2.1 Consensus size: 30
10924578 CAAATTTTTC
** *
10924588 AAAATTACACTTTTGCCCCCAAACTTTTAA
1 AAAATTACACTTTTGCCCCCAAAAATTGAA
*
10924618 AAAATTACA-TTTT-TCCCCAAAAATTGAA
1 AAAATTACACTTTTGCCCCCAAAAATTGAA
10924646 AA
1 AA
10924648 TTTGCCATAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 13 0.50
29 4 0.15
30 9 0.35
ACGTcount: A:0.43, C:0.22, G:0.03, T:0.32
Consensus pattern (30 bp):
AAAATTACACTTTTGCCCCCAAAAATTGAA
Found at i:10925846 original size:28 final size:29
Alignment explanation
Indices: 10925784--10925921 Score: 138
Period size: 30 Copynumber: 4.7 Consensus size: 29
10925774 TTAAGATAAC
*
10925784 TCTTGTCTTTAATTAAGACAAAAATATTTT
1 TCTTGTC-TAAATTAAGACAAAAATATTTT
* * *
10925814 ATCTTGCCTAAATTGAGACAAATATA-TTT
1 -TCTTGTCTAAATTAAGACAAAAATATTTT
* **
10925843 TCTTATCTGGATTAAGACAAAAAATATTTT
1 TCTTGTCTAAATTAAGAC-AAAAATATTTT
* *
10925873 TCTTGTCTAAATTAAGACCAAACAT-GTTT
1 TCTTGTCTAAATTAAGA-CAAAAATATTTT
10925902 T-TTGTCTAAATTAAGACAAA
1 TCTTGTCTAAATTAAGACAAA
10925922 CATGTTAAAG
Statistics
Matches: 89, Mismatches: 15, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
27 4 0.04
28 28 0.31
29 13 0.15
30 37 0.42
31 7 0.08
ACGTcount: A:0.38, C:0.12, G:0.09, T:0.40
Consensus pattern (29 bp):
TCTTGTCTAAATTAAGACAAAAATATTTT
Found at i:10925865 original size:58 final size:57
Alignment explanation
Indices: 10925794--10925921 Score: 159
Period size: 58 Copynumber: 2.2 Consensus size: 57
10925784 TCTTGTCTTT
* * *
10925794 AATTAAGACAAAAATATTTTATCTTGCCTAAATTGAGA-CAAATATATTTTCTTATCTG
1 AATTAAGACAAAAATATTTT-TCTTGCCTAAATTAAGACCAAACATATTTT-TTATCTA
* * * *
10925852 GATTAAGACAAAAAATATTTTTCTTGTCTAAATTAAGACCAAACATGTTTTTTGTCTA
1 AATTAAGAC-AAAAATATTTTTCTTGCCTAAATTAAGACCAAACATATTTTTTATCTA
10925910 AATTAAGACAAA
1 AATTAAGACAAA
10925922 CATGTTAAAG
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
57 3 0.05
58 36 0.60
59 21 0.35
ACGTcount: A:0.41, C:0.12, G:0.09, T:0.38
Consensus pattern (57 bp):
AATTAAGACAAAAATATTTTTCTTGCCTAAATTAAGACCAAACATATTTTTTATCTA
Found at i:10928289 original size:733 final size:733
Alignment explanation
Indices: 10926873--10928340 Score: 2632
Period size: 733 Copynumber: 2.0 Consensus size: 733
10926863 TCATACAAAT
*
10926873 GTATTTTAATATCTCAATAGAATCATGGTACCTTAATAACTAGATAATGAATGCTTACTAAAACA
1 GTATTTTAATATCTCAATAGAATCATAGTACCTTAATAACTAGATAATGAATGCTTACTAAAACA
10926938 AACTCTTCGTCTTATTATCAAAATGCATTTTCATTACAAATAAATTTAATGAAATTAAGCATGAG
66 AACTCTTCGTCTTATTATCAAAATGCATTTTCATTACAAATAAATTTAATGAAATTAAGCATGAG
*
10927003 AATATACTTGCTTTCCTTGGTACCATATTCTCAAAATTTCTAACACCTCCATACATATAGGCATG
131 AATATACTTGCTTTCCTTGGCACCATATTCTCAAAATTTCTAACACCTCCATACATATA-GCATG
** * *
10927068 CTCTCAAGTAACTTGGTTCACATCAAAATCAAGGGCGTTGTTGAAGAGGATTCAAATCATGCTAA
195 CTCTCAAGTAACTTGGTTCACATCAAAATCAAGGGCGTTACTCAAAAGGATTCAAATCATGCTAA
*
10927133 GGTGATCACACGTAGAGGAATATTATTAAAATTTTAATCCTAAAGCCATGGATCACTTTAATTGA
260 GGTGATCACACGCAGAGGAATATTATTAAAATTTTAATCCTAAAGCCATGGATCACTTTAATTGA
10927198 AAATAATCTAGAAAAATCACAAGAGAAAAATTTCGACATACCAGAAAGTTTGATGTCTACTTTCT
325 AAATAATCTAGAAAAATCACAAGAGAAAAATTTCGACATACCAGAAAGTTTGATGTCTACTTTCT
* *
10927263 TTGGTGGAGTCTTCCTTAGCTTTCGTTTTTTGACTTTTGTACACCACTAGCACTTATCAAACTGT
390 TTGGTGGAGTCTTCCTTAGCTTTCGTTTTTGGACTTTTGTACACCACTAGCACTTATCAAACCGT
10927328 AGCAGCACAATTGTCCTGCCTTTAATGGTGATACACATAGTTATTTGTCAAAATCTCTTCACTAA
455 AGCAGCACAATTGTCCTGCCTTTAATGGTGATACACATAGTTATTTGTCAAAATCTCTTCACTAA
* * *
10927393 GAGTGTGAATCTCTAAGCCAAAGTTTGTGCTAGCAAACTCTCAAGTTTGAGCTCTCTTGTGTTTC
520 GAGTGCGAATCTCTAAGCCAAAGTTTGTGCTAGCAAACTCTCAACTTTGAGCTCTCTTGTGTCTC
*
10927458 TCTCTTTTTGGCTGTGACCCTATCTTAACACATGAGAAAATAAAATAGGACACTTCTATACATTC
585 TCTCTTTTTGGCTGTGACCCTATCTTAACACATGAAAAAATAAAATAGGACACTTCTATACATTC
*
10927523 AAGAGGTGGCTAAAGAATTCTCTTATAGATTGAATTGACCTACTTTATATCTAACAAGGATTAGA
650 AAGAGGTGGCTAAAGAATTCTCTTATAGATTGAATTGACCTACTTCATATCTAACAAGGATTAGA
10927588 AAATGTCTTGGGTTAATTG
715 AAATGTCTTGGGTTAATTG
*
10927607 GTATTTTAATATCTTAATAGAATCATAGTACCTTAATAACTAGATAATGAATGCTTACTAAAACA
1 GTATTTTAATATCTCAATAGAATCATAGTACCTTAATAACTAGATAATGAATGCTTACTAAAACA
*
10927672 AACTCTTCGTCTTATTATCAAAATGCATTTTTATTACAAATAAATTTAATGAAATTAAGCATGAG
66 AACTCTTCGTCTTATTATCAAAATGCATTTTCATTACAAATAAATTTAATGAAATTAAGCATGAG
* *
10927737 AATATACTTGCTTTCCTTGGCACCATATTCTCAAAGTTTCTAACACCTCTATACATAT-GCATGC
131 AATATACTTGCTTTCCTTGGCACCATATTCTCAAAATTTCTAACACCTCCATACATATAGCATGC
*
10927801 TCTGAAGTAACTTGGTTCACATCAAAATCAAGGGCGTTACTCAAAAGGATTCAAATCATGCTAAG
196 TCTCAAGTAACTTGGTTCACATCAAAATCAAGGGCGTTACTCAAAAGGATTCAAATCATGCTAAG
* *
10927866 GTGATCACATGCAGAGGAATATTATTAAAATTTTAATCCTAAAGCCATGGATCACTTTATTTGAA
261 GTGATCACACGCAGAGGAATATTATTAAAATTTTAATCCTAAAGCCATGGATCACTTTAATTGAA
* * *
10927931 ATTAATCTAGAAAAATCACAAGAGAAAGATTTCGACATACCAGAAAGTTTGATGTCTGCTTTCTT
326 AATAATCTAGAAAAATCACAAGAGAAAAATTTCGACATACCAGAAAGTTTGATGTCTACTTTCTT
* * *
10927996 TGGTGGAGTCTTCCTTAGCTTTCGTTTTTGGACTTTTGTACACCAACTAGGATTTATTAAACCGT
391 TGGTGGAGTCTTCCTTAGCTTTCGTTTTTGGACTTTTGTACACC-ACTAGCACTTATCAAACCGT
* *
10928061 AGCAGCACAATTGTCCTGCCTTTAATGGTGATCCACATAGTTATTTGTCGAAATCTCTTCACTAA
455 AGCAGCACAATTGTCCTGCCTTTAATGGTGATACACATAGTTATTTGTCAAAATCTCTTCACTAA
10928126 GAGTGCGAATCTCTAAGCCAAAGTTTGTGCTAGCAAACTCTCAACTTTGAGCTCTCTTGTGTCTC
520 GAGTGCGAATCTCTAAGCCAAAGTTTGTGCTAGCAAACTCTCAACTTTGAGCTCTCTTGTGTCTC
*
10928191 TCTCTTTTTGGCTGTGATCCTATCTTAACACATGAAAAAATAAAATAGGACACTTCTATACATTC
585 TCTCTTTTTGGCTGTGACCCTATCTTAACACATGAAAAAATAAAATAGGACACTTCTATACATTC
*
10928256 AAGAGGTGGCTAAAGAATTCTCTTATAGATTGAATTGATCTACTTCATATCTAACAAGGATTAGA
650 AAGAGGTGGCTAAAGAATTCTCTTATAGATTGAATTGACCTACTTCATATCTAACAAGGATTAGA
10928321 AAATGTCTTGGGTTAATTG
715 AAATGTCTTGGGTTAATTG
10928340 G
1 G
10928341 GCCTTTGTTT
Statistics
Matches: 702, Mismatches: 31, Indels: 3
0.95 0.04 0.00
Matches are distributed among these distances:
732 233 0.33
733 287 0.41
734 182 0.26
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.34
Consensus pattern (733 bp):
GTATTTTAATATCTCAATAGAATCATAGTACCTTAATAACTAGATAATGAATGCTTACTAAAACA
AACTCTTCGTCTTATTATCAAAATGCATTTTCATTACAAATAAATTTAATGAAATTAAGCATGAG
AATATACTTGCTTTCCTTGGCACCATATTCTCAAAATTTCTAACACCTCCATACATATAGCATGC
TCTCAAGTAACTTGGTTCACATCAAAATCAAGGGCGTTACTCAAAAGGATTCAAATCATGCTAAG
GTGATCACACGCAGAGGAATATTATTAAAATTTTAATCCTAAAGCCATGGATCACTTTAATTGAA
AATAATCTAGAAAAATCACAAGAGAAAAATTTCGACATACCAGAAAGTTTGATGTCTACTTTCTT
TGGTGGAGTCTTCCTTAGCTTTCGTTTTTGGACTTTTGTACACCACTAGCACTTATCAAACCGTA
GCAGCACAATTGTCCTGCCTTTAATGGTGATACACATAGTTATTTGTCAAAATCTCTTCACTAAG
AGTGCGAATCTCTAAGCCAAAGTTTGTGCTAGCAAACTCTCAACTTTGAGCTCTCTTGTGTCTCT
CTCTTTTTGGCTGTGACCCTATCTTAACACATGAAAAAATAAAATAGGACACTTCTATACATTCA
AGAGGTGGCTAAAGAATTCTCTTATAGATTGAATTGACCTACTTCATATCTAACAAGGATTAGAA
AATGTCTTGGGTTAATTG
Found at i:10928537 original size:6 final size:6
Alignment explanation
Indices: 10928526--10928550 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
10928516 TTAACTAAGA
10928526 ATTTAT ATTTAT ATTTAT ATTTAT A
1 ATTTAT ATTTAT ATTTAT ATTTAT A
10928551 GATCTTGAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (6 bp):
ATTTAT
Found at i:10930060 original size:61 final size:62
Alignment explanation
Indices: 10929995--10930113 Score: 152
Period size: 62 Copynumber: 1.9 Consensus size: 62
10929985 GACAGAAAGT
* *
10929995 TTCTCGCTACAGCAAAATT-CAAGCAGC-AAAACAAAAAGTTTCTCACTGCAACGAGAACTCA
1 TTCTCACTACAGC-AAATTACAAGCAACTAAAACAAAAAGTTTCTCACTGCAACGAGAACTCA
* * * * *
10930056 TTCTCACTACAGCGAGTTACAAGCAACTAAAACAGAAAGTTTCTCGCTGCAGCGAGAA
1 TTCTCACTACAGCAAATTACAAGCAACTAAAACAAAAAGTTTCTCACTGCAACGAGAA
10930114 GCAAGGCACC
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
60 3 0.06
61 19 0.39
62 27 0.55
ACGTcount: A:0.39, C:0.25, G:0.16, T:0.20
Consensus pattern (62 bp):
TTCTCACTACAGCAAATTACAAGCAACTAAAACAAAAAGTTTCTCACTGCAACGAGAACTCA
Found at i:10934022 original size:29 final size:29
Alignment explanation
Indices: 10933980--10934040 Score: 113
Period size: 29 Copynumber: 2.1 Consensus size: 29
10933970 AAAATCTAAA
*
10933980 CAAGCATAACTTGTCAGATTGATCAATTG
1 CAAGCATAACTTGTCAGATTAATCAATTG
10934009 CAAGCATAACTTGTCAGATTAATCAATTG
1 CAAGCATAACTTGTCAGATTAATCAATTG
10934038 CAA
1 CAA
10934041 TAATAATGTC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.30
Consensus pattern (29 bp):
CAAGCATAACTTGTCAGATTAATCAATTG
Found at i:10938816 original size:19 final size:20
Alignment explanation
Indices: 10938776--10938819 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
10938766 GCGGAAGTGG
10938776 AAACAGTGAAAAAAAATGCA
1 AAACAGTGAAAAAAAATGCA
10938796 AAACAGT-AAAAGAAAAT-CA
1 AAACAGTGAAAA-AAAATGCA
10938815 AAACA
1 AAACA
10938820 AAGGTTAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 11 0.48
20 12 0.52
ACGTcount: A:0.68, C:0.11, G:0.11, T:0.09
Consensus pattern (20 bp):
AAACAGTGAAAAAAAATGCA
Found at i:10945291 original size:28 final size:28
Alignment explanation
Indices: 10945259--10945318 Score: 120
Period size: 28 Copynumber: 2.1 Consensus size: 28
10945249 TGAAAGTTAA
10945259 CAAAATTTACCTATTATTCACCCAACAT
1 CAAAATTTACCTATTATTCACCCAACAT
10945287 CAAAATTTACCTATTATTCACCCAACAT
1 CAAAATTTACCTATTATTCACCCAACAT
10945315 CAAA
1 CAAA
10945319 TGTGATTTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.42, C:0.28, G:0.00, T:0.30
Consensus pattern (28 bp):
CAAAATTTACCTATTATTCACCCAACAT
Found at i:10951135 original size:19 final size:18
Alignment explanation
Indices: 10951102--10951137 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
10951092 TTTAGAGTCC
10951102 TCTTCGAATGACCATTCT
1 TCTTCGAATGACCATTCT
*
10951120 TCTTCAGAATGGCCATTC
1 TCTTC-GAATGACCATTC
10951138 CATTGAACCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.22, C:0.28, G:0.14, T:0.36
Consensus pattern (18 bp):
TCTTCGAATGACCATTCT
Found at i:10952989 original size:20 final size:20
Alignment explanation
Indices: 10952964--10953009 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
10952954 TTTTGACCCC
10952964 ATTTGACTTATTGGAGTATA
1 ATTTGACTTATTGGAGTATA
*
10952984 ATTTGACTTATTGGAGTATG
1 ATTTGACTTATTGGAGTATA
10953004 ATTTGA
1 ATTTGA
10953010 GGTTTAGAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.28, C:0.04, G:0.22, T:0.46
Consensus pattern (20 bp):
ATTTGACTTATTGGAGTATA
Found at i:10960301 original size:449 final size:451
Alignment explanation
Indices: 10959431--10960338 Score: 1355
Period size: 449 Copynumber: 2.0 Consensus size: 451
10959421 TTGATTAATT
* * *
10959431 TCATGTTTGAGCGAGAGGTCAAATCCCAATAATGGTATCAAAGCCTTTTTTTGATGTTTTCGAAT
1 TCATGTTTGAGCGAGAGGTCAAATCCCAACAATGGTATCAAAGCCTTTGTTTGATATTTTCGAAT
10959496 AATATGCATACTTGATTCTTGGTGATAATCAATAAGATTGATTTGTGTGTTGATTTGGTGTATAT
66 AATATGCATACTTGATTCTTGGTGATAATCAATAAGATTGATTTGTGTGTTGATTTGGTGTATAT
* *
10959561 TAGTTTTGAAGGCTATCTTTAAAATCTATTTTTCTATTTTAATTCAAATCTGAACAACATGTAAT
131 CAGTTTTGAAGGCTATCTTTAAAATCTATTTTTCTATTTTAATTCAAATATGAACAACATGTAAT
* * *
10959626 TAATTCATTAAAACGTGTTTGAAAAGGTTTAAAATCATGCTTAGTTGAAGAATTAATAATTGGAT
196 TAATTAATTAAAACATGTTTGAAAAAGTTTAAAATCATGCTTAGTTGAAGAATTAATAATTGGAT
* ** *
10959691 TAAAAGGCTTTCAAAGCCAAGTTAAAACCAAATAGTTTTGAGGTGTTTCAAAGACTAATGTGCCA
261 TAAAAGGCTTGCAAAGCCAAGTTAAAACCAAATAGTTTTGAAATGTTTCAAAGACTAATATGCCA
*
10959756 AATATTTTTTACTAACATTGGGTAAGTGTTATGAGCAATTTTTAATTGTTAAAAATTAGTTTTAT
326 AATATTTTTTACTAACATTGGGTAAATGTTATGAGCAATTTTTAATTGTTAAAAATTAGTTTTAT
*
10959821 CAAATTAAATTACTGAATGTTTCAGCCAAACTTGATTTAGTATCAAAAAGGTTCATAACAA
391 CAAATTAAATTACTGAATGTTTCAGCCAAACTTGATTTAGTATCAAAAAGGTTCATAAAAA
* *
10959882 TCATGTTTGAGC-AGGAGGTCGAATCCCAACAATGGTATCAAAGCCTTTGTTTGATATTTT-TAT
1 TCATGTTTGAGCGA-GAGGTCAAATCCCAACAATGGTATCAAAGCCTTTGTTTGATATTTTCGA-
* * * *
10959945 GTAATATGCATGCTTGATTCTT-GTTATTAATCAAT-AGCATTGATTTGTGTTTTGATTTGGTGT
64 ATAATATGCATACTTGATTCTTGGTGA-TAATCAATAAG-ATTGATTTGTGTGTTGATTTGGTGT
* * *
10960008 ATATCAGTTTTGAAGGCTGTCTTTAAAATCTGTTTTTCTGTTTTAATTCAAATATGAACAACATG
127 ATATCAGTTTTGAAGGCTATCTTTAAAATCTATTTTTCTATTTTAATTCAAATATGAACAACATG
* * *
10960073 TAATTAATTAATT-AAACATGTTTTAAAAAG-TTAAAATTATGTTTAGTTGAAGAATTAATAATT
192 TAATTAATTAATTAAAACATGTTTGAAAAAGTTTAAAATCATGCTTAGTTGAAGAATTAATAATT
**** ***
10960136 GGATTAAAAGGCTTGCAAAGCCAAGTTAAAATTGCATAGTTTTGAAATGTTTTGGAGACTAATAT
257 GGATTAAAAGGCTTGCAAAGCCAAGTTAAAACCAAATAGTTTTGAAATGTTTCAAAGACTAATAT
* * * * *
10960201 GTCGATTATTTTTTACTAACATTGGGTAAATGTTATGAGTAGTTTTTAATTGTTAAAAATTAGTT
322 GCCAAATATTTTTTACTAACATTGGGTAAATGTTATGAGCAATTTTTAATTGTTAAAAATTAGTT
*
10960266 TTATCAAATTAAATTACT-ACATGTTTC-GACCAAACTTGATTTAGTATGAAAAAGGTTCATAAA
387 TTATCAAATTAAATTACTGA-ATGTTTCAG-CCAAACTTGATTTAGTATCAAAAAGGTTCATAAA
10960329 AA
450 AA
10960331 TCATGTTT
1 TCATGTTT
10960339 TCAAGTTCTA
Statistics
Matches: 412, Mismatches: 39, Indels: 14
0.89 0.08 0.03
Matches are distributed among these distances:
448 2 0.00
449 211 0.51
450 21 0.05
451 178 0.43
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.40
Consensus pattern (451 bp):
TCATGTTTGAGCGAGAGGTCAAATCCCAACAATGGTATCAAAGCCTTTGTTTGATATTTTCGAAT
AATATGCATACTTGATTCTTGGTGATAATCAATAAGATTGATTTGTGTGTTGATTTGGTGTATAT
CAGTTTTGAAGGCTATCTTTAAAATCTATTTTTCTATTTTAATTCAAATATGAACAACATGTAAT
TAATTAATTAAAACATGTTTGAAAAAGTTTAAAATCATGCTTAGTTGAAGAATTAATAATTGGAT
TAAAAGGCTTGCAAAGCCAAGTTAAAACCAAATAGTTTTGAAATGTTTCAAAGACTAATATGCCA
AATATTTTTTACTAACATTGGGTAAATGTTATGAGCAATTTTTAATTGTTAAAAATTAGTTTTAT
CAAATTAAATTACTGAATGTTTCAGCCAAACTTGATTTAGTATCAAAAAGGTTCATAAAAA
Found at i:10960611 original size:77 final size:77
Alignment explanation
Indices: 10960523--10960686 Score: 240
Period size: 77 Copynumber: 2.1 Consensus size: 77
10960513 AATGCCATCT
* *
10960523 ATTTTAATTTTGGGTGATTCATAAAAAATAAAAAATTGTTTCCTACTTTCAAAG-TAATTCTTAA
1 ATTTTAATTTTGGGTGATTCATAAAAAATAAAAAATTGTTTCCTACTTTAAAAGAT-ATTCCTAA
10960587 AATTAAAGATAGA
65 AATTAAAGATAGA
* * **
10960600 ATTTTATTTTTGGGTGATTCATAAAGAATAGGAAATTGTTTCCTACTTTAAAAGATATTCCTAAA
1 ATTTTAATTTTGGGTGATTCATAAAAAATAAAAAATTGTTTCCTACTTTAAAAGATATTCCTAAA
* *
10960665 ATTAAGGATAGT
66 ATTAAAGATAGA
10960677 ATTTTAATTT
1 ATTTTAATTT
10960687 GGGAAATTCA
Statistics
Matches: 77, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
77 76 0.99
78 1 0.01
ACGTcount: A:0.39, C:0.07, G:0.12, T:0.41
Consensus pattern (77 bp):
ATTTTAATTTTGGGTGATTCATAAAAAATAAAAAATTGTTTCCTACTTTAAAAGATATTCCTAAA
ATTAAAGATAGA
Found at i:10962553 original size:26 final size:26
Alignment explanation
Indices: 10962493--10962554 Score: 106
Period size: 26 Copynumber: 2.4 Consensus size: 26
10962483 ACCATATACC
*
10962493 CATCATCAACATGCACACCATCCCAT
1 CATCATCATCATGCACACCATCCCAT
*
10962519 CATCATCATCATGCACACCATTCCAT
1 CATCATCATCATGCACACCATCCCAT
10962545 CATCATCATC
1 CATCATCATC
10962555 TCATATGCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.32, C:0.40, G:0.03, T:0.24
Consensus pattern (26 bp):
CATCATCATCATGCACACCATCCCAT
Found at i:10965838 original size:10 final size:10
Alignment explanation
Indices: 10965803--10965841 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
10965793 TTGTGGCTAA
10965803 ATTTGATGAT
1 ATTTGATGAT
*
10965813 ATTTCATGAT
1 ATTTGATGAT
*
10965823 ATTTTGGTGAT
1 A-TTTGATGAT
10965834 ATTTGATG
1 ATTTGATG
10965842 TTTGGTGAGG
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
10 16 0.67
11 8 0.33
ACGTcount: A:0.26, C:0.03, G:0.21, T:0.51
Consensus pattern (10 bp):
ATTTGATGAT
Found at i:10971152 original size:18 final size:19
Alignment explanation
Indices: 10971129--10971165 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
10971119 GTGCGAAGAA
10971129 TATTTTA-GAATAAAATAT
1 TATTTTATGAATAAAATAT
10971147 TATTTTATGAATAAAATAT
1 TATTTTATGAATAAAATAT
10971166 ATTAAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (19 bp):
TATTTTATGAATAAAATAT
Found at i:10971168 original size:18 final size:17
Alignment explanation
Indices: 10971128--10971168 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 17
10971118 GGTGCGAAGA
10971128 ATATTTTAGAATAAAAT
1 ATATTTTAGAATAAAAT
10971145 ATTATTTTATGAATAAAAT
1 A-TATTTTA-GAATAAAAT
10971164 ATATT
1 ATATT
10971169 AAAATATTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 1 0.05
18 11 0.50
19 10 0.45
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (17 bp):
ATATTTTAGAATAAAAT
Found at i:10972321 original size:34 final size:34
Alignment explanation
Indices: 10972240--10972322 Score: 87
Period size: 34 Copynumber: 2.4 Consensus size: 34
10972230 GACAATCAAT
* * *
10972240 TTTTTAGAGAGAAAAGAGCAGCTTGGGTGCTAAC
1 TTTTGAGAGAGAAAAGAGCAGCTTGGCTGCCAAC
* * *
10972274 TTTTGAGAAAGAAAAGAGTAGCTTTGGCTGCCGA-
1 TTTTGAGAGAGAAAAGAGCAGC-TTGGCTGCCAAC
*
10972308 TTTTGAGGGAGAAAA
1 TTTTGAGAGAGAAAA
10972323 AGAAGAAACT
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
34 32 0.80
35 8 0.20
ACGTcount: A:0.34, C:0.10, G:0.30, T:0.27
Consensus pattern (34 bp):
TTTTGAGAGAGAAAAGAGCAGCTTGGCTGCCAAC
Found at i:10972488 original size:22 final size:22
Alignment explanation
Indices: 10972460--10972525 Score: 78
Period size: 22 Copynumber: 2.9 Consensus size: 22
10972450 GAAATAAGAA
10972460 AAAAAAATGGGCATAGCCCAAT
1 AAAAAAATGGGCATAGCCCAAT
* *
10972482 AAAAAAATAGGCATGGCCCAAT
1 AAAAAAATGGGCATAGCCCAAT
* *
10972504 AGAAAGAAATGGGAAGAGCCCA
1 A-AAA-AAATGGGCATAGCCCA
10972526 TGGAAAGGGC
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
22 21 0.58
23 3 0.08
24 12 0.33
ACGTcount: A:0.50, C:0.17, G:0.23, T:0.11
Consensus pattern (22 bp):
AAAAAAATGGGCATAGCCCAAT
Found at i:10995601 original size:28 final size:27
Alignment explanation
Indices: 10995570--10995623 Score: 81
Period size: 28 Copynumber: 2.0 Consensus size: 27
10995560 ATTTAGAGTA
*
10995570 TAGGGGTAAAATGGTAATTTTGCCACCT
1 TAGGGGCAAAATGGTAATTTT-CCACCT
*
10995598 TAGGGGCAAAATTGTAATTTTCCACC
1 TAGGGGCAAAATGGTAATTTTCCACC
10995624 ATCAGAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 5 0.21
28 19 0.79
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (27 bp):
TAGGGGCAAAATGGTAATTTTCCACCT
Found at i:11003417 original size:28 final size:30
Alignment explanation
Indices: 11003376--11003435 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 30
11003366 GTCTATGGGC
* *
11003376 AATTTTTCAGTTTT-T-TGGGCAAAAATGT
1 AATTTTTCACTTTTATAGGGGCAAAAATGT
*
11003404 AATTTTTCACTTTTATAGGGGCAAAAGTGT
1 AATTTTTCACTTTTATAGGGGCAAAAATGT
11003434 AA
1 AA
11003436 ATTTCAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 13 0.48
29 1 0.04
30 13 0.48
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (30 bp):
AATTTTTCACTTTTATAGGGGCAAAAATGT
Found at i:11007771 original size:16 final size:16
Alignment explanation
Indices: 11007752--11007785 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
11007742 TATAAATATC
*
11007752 ATTTTTATTAAAAAAT
1 ATTTTAATTAAAAAAT
*
11007768 ATTTTAATTAGAAAAT
1 ATTTTAATTAAAAAAT
11007784 AT
1 AT
11007786 AATATTTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (16 bp):
ATTTTAATTAAAAAAT
Found at i:11008990 original size:28 final size:28
Alignment explanation
Indices: 11008908--11008990 Score: 96
Period size: 28 Copynumber: 3.0 Consensus size: 28
11008898 AAAATGTTCT
* *
11008908 GGGGTTGCAAAATTACCGTTTTACCCCC
1 GGGGTGGCAAAATTACCATTTTACCCCC
* * *
11008936 GAGATGGCAAAATTA-CAGTTTTGCCCCC
1 GGGGTGGCAAAATTACCA-TTTTACCCCC
*
11008964 GGGGTGGCAAAATTACCATTTCACCCC
1 GGGGTGGCAAAATTACCATTTTACCCC
11008991 TATACTCCAA
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
27 1 0.02
28 41 0.93
29 2 0.05
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (28 bp):
GGGGTGGCAAAATTACCATTTTACCCCC
Found at i:11018305 original size:15 final size:16
Alignment explanation
Indices: 11018285--11018319 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
11018275 GGGAATTCTT
*
11018285 GAGTTTGA-AATAGGG
1 GAGTTTGACAATAGAG
11018300 GAGTTTGACAATAGAG
1 GAGTTTGACAATAGAG
11018316 GAGT
1 GAGT
11018320 ATGAGGCTCG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.34, C:0.03, G:0.37, T:0.26
Consensus pattern (16 bp):
GAGTTTGACAATAGAG
Found at i:11025292 original size:13 final size:14
Alignment explanation
Indices: 11025269--11025297 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
11025259 TATAAAAAAA
11025269 TAATATATTTTATT
1 TAATATATTTTATT
11025283 TAATAT-TTTTATT
1 TAATATATTTTATT
11025296 TA
1 TA
11025298 GTTTGATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (14 bp):
TAATATATTTTATT
Found at i:11026234 original size:36 final size:36
Alignment explanation
Indices: 11026140--11026237 Score: 142
Period size: 36 Copynumber: 2.7 Consensus size: 36
11026130 ATATTGCCTA
* * *
11026140 TGCGCAATGTGGGGGAGCACACAATGGCATTAGCTG
1 TGCGCGATGTGGGGGAGCACACGATGGCATTAACTG
* *
11026176 TGCGCGATGTGGGAGAGCACACGATGGCGTTAACTG
1 TGCGCGATGTGGGGGAGCACACGATGGCATTAACTG
*
11026212 TGCGCGATGTGGGGGTGCACACGATG
1 TGCGCGATGTGGGGGAGCACACGATG
11026238 ACTTCGGCTA
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 55 1.00
ACGTcount: A:0.21, C:0.19, G:0.40, T:0.19
Consensus pattern (36 bp):
TGCGCGATGTGGGGGAGCACACGATGGCATTAACTG
Found at i:11027321 original size:13 final size:13
Alignment explanation
Indices: 11027303--11027335 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
11027293 CCTCCATGGA
11027303 TGAGTTTTGAACT
1 TGAGTTTTGAACT
11027316 TGAGTTTTGAACT
1 TGAGTTTTGAACT
11027329 TGAGTTT
1 TGAGTTT
11027336 AATTGAATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.21, C:0.06, G:0.24, T:0.48
Consensus pattern (13 bp):
TGAGTTTTGAACT
Done.